Citrus Sinensis ID: 013717

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------
Protein Sequence
MRVRSWLATCATTTTANDSTVPFPKSQRHLVSDSSSSSDATGSSTSPSDRSYSVSLQSNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSSPLNLQKWNL
Secondary Structure (PSIPRED)
ccEEcEEcccccccccccEEEEcccccEEEEEEEccccccccccccccccEEEEEcccEEEEEEccccccEEEEcccccEEEEcccccEEEEEcccccccEEEEEEcccccEEEEccccccccccEEEEEccccccccccccccEEEEEEcccEEEEEEccccEEEEEcccccEEEEEEEcccccccEEEEEccccEEEEEccccccccccccEEEEEEEcccEEEEEEccccEEEEEcccccEEEccccccccEEEEEEccccEEEEccccccEEEEEccccccccEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEcccccccEEccccccccccEEEEEEccccEEEEEEccccEEEEEcccccEEEcccccccccccEEEEEEEccccccccEEEEEccccccEEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEccccccccEEEEEEcccccEEEEEccccEEEEEEccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEcccccEEEEEcccccccEEEEEEcccccEEEcccEEEEEEcccccccEEEEEcccccccccEEEEEEcccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEEcccccEEEEcccccEEEEcccccEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEcccccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccccHHHHHHcccccccEEEEcccccEEEEEccccEEEEEEcccccccEEEEEEccccccEEEEEEcccccccccEEEEEEccccEEEEEEcccccEEEEEcccccccc
Coil and Loop (DISEMBL)
mrvrswlatcattttandstvpfpksqrhlvsdsssssdatgsstspsdrsysvslqsnlslqtlpsvpslqklspdetinfssashlcinsvqlghklpigciaVHHNFLYAAssheinvydrtgttwtsintfndndsssgsvksvtfcdgkiftahqdckirvwqltptkhhklkttlptvnDRLLrfmlpnsyvtvRRHKKKLWIEhgdavtglavnnGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSaggtvytgsadrKIRVWAKPFNEKRHALIATLEKHKSAVNALalsddgtvlfsgacdrsilvwdredsanhMVVTGALRGHGKAILCLINVAGLlmsgsadrtvriwqrgsdgrfgclavleghtkpvkslTAVTEEGQNGVVSVFSGSLDGEIRAWQVsvscpnssplnlqkwnl
Flexible Loop (DISEMBL)
mrvrswlatcattttandstvpfpksqrhlvsdsssssdatgsstspsdrsYSVSLQSNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAASSHEINVYDRTGTTWTSINtfndndsssgsVKSVTFCDGKIFTAHQdckirvwqltptkhhklkttlptvndrllrFMLPNSYVTVRRHKKKLWIEHgdavtglavnnGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAvsaggtvytgsadrkirVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLtavteegqngVVSVFSGSLDGEIRAWQVsvscpnssplnlqkwnl
Low Complexity Region (SEG)
MRVRSWLatcattttaNDSTVPFPKSQRHLVsdsssssdatgsstspsdRSYSVSLQSNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQltptkhhklkttlptVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSSPLNLQKWNL
Disordered region (IsUnstruct)
*****WLATCA*********************************************************************NFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAASSHEINVYDRTGTTWTSINTFND*******VKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSY**********WIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC*************
Disordered Region (DISOPRED)
MRVRSWLATCATTTTAND*************SDSSSSSDATGSSTSPSDRSYSVSLQSNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSSPL*******
Disordered Region (DISEMBL)
MRVRSWLATCATTTTANDSTVPFP*******************************LQSNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSSPLNLQKWNL
Disordered Region (DISPRO)
MRVRSWLATCATTTTANDSTVPFPKSQRHLVSDSSSSSDATGSSTSPSDRSYSVSLQSNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSSPLNLQKWNL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRVRSWLATCATTTTANDSTVPFPKSQRHLVSDSSSSSDATGSSTSPSDRSYSVSLQSNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSSPLNLQKWNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	437	2.2.26 [Sep-21-2011]
P90648	732	Myosin heavy chain kinase	yes	no	0.434	0.259	0.303	3e-19
Q9VZF4	1326	F-box/WD repeat-containin	yes	no	0.446	0.147	0.347	1e-18
B0X2V9	670	WD repeat-containing prot	N/A	no	0.453	0.295	0.308	7e-18
Q16MY0	659	WD repeat-containing prot	N/A	no	0.453	0.300	0.303	1e-17
B4QB64	668	WD repeat-containing prot	N/A	no	0.450	0.294	0.300	1e-16
B4HND9	680	WD repeat-containing prot	N/A	no	0.450	0.289	0.300	1e-16
B3MET8	667	WD repeat-containing prot	N/A	no	0.450	0.295	0.300	2e-16
Q09990	665	F-box/WD repeat-containin	yes	no	0.446	0.293	0.309	3e-16
B3NSK1	680	WD repeat-containing prot	N/A	no	0.450	0.289	0.300	4e-16
B4P7H8	680	WD repeat-containing prot	N/A	no	0.450	0.289	0.300	4e-16

>sp|P90648|MHCKB_DICDI Myosin heavy chain kinase B OS=Dictyostelium discoideum GN=mhkB PE=2 SV=1

 Score = 96.7 bits (239), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 106/211 (50%), Gaps = 21/211 (9%)

Query: 211 HGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGS 270
           H   V  +  N+  ++S S D S+K+W    LRC+ +++ H+  V+ V ++    +++GS
Sbjct: 501 HEGPVESICYNDQYLFSGSSDHSIKVWDLKKLRCIFTLEGHDKPVHTVLLN-DKYLFSGS 559

Query: 271 ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSA 330
           +D+ I+VW     E ++    TLE H  AV  L +S  G  LFSG+ D++I VWD +   
Sbjct: 560 SDKTIKVWDLKTLECKY----TLESHARAVKTLCIS--GQYLFSGSNDKTIKVWDLKT-- 611

Query: 331 NHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVK 390
                   L+GH K +  +  +   L SGS D+T+R+W   S     C A L GH + V+
Sbjct: 612 --FRCNYTLKGHTKWVTTICILGTNLYSGSYDKTIRVWNLKS---LECSATLRGHDRWVE 666

Query: 391 SLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
            +    +        +F+ S D  I+ W + 
Sbjct: 667 HMVICDK-------LLFTASDDNTIKIWDLE 690

Phosphorylates threonine in the C-terminal tail region of myosin II heavy chain. This phosphorylation is critical in regulating the assembly and disassembly of myosin II filament.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 7

>sp|Q9VZF4|FBXW7_DROME F-box/WD repeat-containing protein 7 OS=Drosophila melanogaster GN=ago PE=1 SV=1

 Score = 95.1 bits (235), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 110/219 (50%), Gaps = 24/219 (10%)

Query: 204  KKKLWIEHGD-AVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA 262
            K K+   H D  +T L  +   I S S D +LK+W A + +CL ++  H   V +  +S 
Sbjct: 986  KPKVLKGHDDHVITCLQFSGNRIVSGSDDNTLKVWSAVNGKCLRTLVGHTGGVWSSQMS- 1044

Query: 263  GGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSIL 322
            G  + +GS DR ++VW    +    A + TL+ H S V  + L   G+ + SG+ D ++ 
Sbjct: 1045 GNIIISGSTDRTLKVW----DMDSGACVHTLQGHTSTVRCMHLH--GSKVVSGSRDATLR 1098

Query: 323  VWDRED-SANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAV 381
            VWD E  S  H++V     GH  A+ C+     L++SG+ D  V+IW      R  CL  
Sbjct: 1099 VWDIEQGSCLHVLV-----GHLAAVRCVQYDGKLIVSGAYDYMVKIWH---PERQECLHT 1150

Query: 382  LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
            L+GHT  V SL       Q   + V SGSLD  IR W V
Sbjct: 1151 LQGHTNRVYSL-------QFDGLHVVSGSLDTSIRVWDV 1182

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins (By similarity). Involved in the degradation of cyclin E and dm/Myc. Required for endocycles, but not mitosis in follicle cell epithelium.

Drosophila melanogaster (taxid: 7227)

>sp|B0X2V9|WDR48_CULQU WD repeat-containing protein 48 homolog OS=Culex quinquefasciatus GN=CPIJ014111 PE=3 SV=1

 Score = 92.4 bits (228), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 120/224 (53%), Gaps = 26/224 (11%)

Query: 211 HGDAVTGLAVN--NGLIYSVSWDKSLKIWRA----SDLRCLESIKAHEDAVNAVAVSAGG 264
           H + V  L ++  NG +YS   D  +++W +    S    ++S++ H D VN + +  GG
Sbjct: 14  HRNGVNALQLDPVNGRLYSAGRDAIIRVWNSTQTSSQEPYIQSMEHHNDWVNDIVLCCGG 73

Query: 265 -TVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILV 323
             + + S D  ++VW    N  +   ++TL  H+  V ALA + D   + S   D++I +
Sbjct: 74  RNLISASCDTTVKVW----NAHKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFL 129

Query: 324 WDRED-----SANHMVVTGALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRF 376
           WD        ++N+ V T ++ G   +I  L +N +G +++SGS + T+RIW   +  + 
Sbjct: 130 WDVNTLTALTASNNTVTTSSITGSKDSIYSLAMNPSGTIIVSGSTENTLRIWDPRTCNK- 188

Query: 377 GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
             +A L+GHT+ VK+L  V+E+G      V SGS DG+I+ W +
Sbjct: 189 --IAKLKGHTENVKAL-VVSEDG----TQVVSGSSDGKIKLWSI 225

Regulator of deubiquitinating complexes. Activates deubiquitination by increasing the catalytic turnover without increasing the affinity of deubiquitinating enzymes for the substrate.

Culex quinquefasciatus (taxid: 7176)

>sp|Q16MY0|WDR48_AEDAE WD repeat-containing protein 48 homolog OS=Aedes aegypti GN=AAEL012158 PE=3 SV=1

 Score = 91.7 bits (226), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 120/224 (53%), Gaps = 26/224 (11%)

Query: 211 HGDAVTGLAVN--NGLIYSVSWDKSLKIWRA----SDLRCLESIKAHEDAVNAVAVSAGG 264
           H + V  L ++  NG +YS   D  +++W +    S    ++S++ H D VN + +  GG
Sbjct: 28  HRNGVNALQLDTINGRLYSAGRDAIIRVWNSMQNNSQEPYIQSMEHHNDWVNDIVLCCGG 87

Query: 265 -TVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILV 323
             + + S D  ++VW    N  +   ++TL  H+  V ALA + D   + S   D++I +
Sbjct: 88  RNLISASCDTTVKVW----NAHKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFL 143

Query: 324 WDRED-----SANHMVVTGALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRF 376
           WD        ++N+ V T ++ G   +I  L +N +G +++ GS + T+RIW   +  + 
Sbjct: 144 WDINTLTALTASNNTVTTSSITGSKDSIYSLAMNPSGTVIVCGSTENTLRIWDPRTCNK- 202

Query: 377 GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
             +A L+GH + VK+L  V+E+GQ+    V SGS DG+I+ W +
Sbjct: 203 --IAKLKGHAENVKAL-VVSEDGQH----VISGSSDGKIKQWSI 239

Regulator of deubiquitinating complexes. Activates deubiquitination by increasing the catalytic turnover without increasing the affinity of deubiquitinating enzymes for the substrate.

Aedes aegypti (taxid: 7159)

>sp|B4QB64|WDR48_DROSI WD repeat-containing protein 48 homolog OS=Drosophila simulans GN=GD25924 PE=3 SV=1

 Score = 88.2 bits (217), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 115/226 (50%), Gaps = 29/226 (12%)

Query: 210 EHGDAVTGLAV--NNGLIYSVSWDKSLKIWRA---SDLRCLESIKAHEDAVNAVAVSAGG 264
           +H + V  L +  NNG +YS   D  +++W     S  + ++S++ H D VN + +   G
Sbjct: 26  QHRNGVNALQLDANNGKLYSAGRDAIIRVWNTRTDSSEKYIQSMEHHNDWVNDIVLCCNG 85

Query: 265 -TVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILV 323
             + + S D  ++VW    N ++   ++TL  H+  V ALA + D   + S   D++I +
Sbjct: 86  RNLISASCDTTVKVW----NAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFL 141

Query: 324 WDRE-----DSANHMVVTGALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRF 376
           WD        ++N+ V T +L G   +I  L +N +G +++SGS +  +RIW    D R 
Sbjct: 142 WDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIW----DPR- 196

Query: 377 GCLAV--LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
            C+ +  L GHT+ V+ L    +  Q     V SGS DG I+ W +
Sbjct: 197 TCMRIMKLRGHTENVRCLVVSPDGNQ-----VVSGSSDGTIKVWNL 237

Regulator of deubiquitinating complexes. Activates deubiquitination by increasing the catalytic turnover without increasing the affinity of deubiquitinating enzymes for the substrate.

Drosophila simulans (taxid: 7240)

>sp|B4HND9|WDR48_DROSE WD repeat-containing protein 48 homolog OS=Drosophila sechellia GN=GM20456 PE=3 SV=1

 Score = 87.8 bits (216), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 115/226 (50%), Gaps = 29/226 (12%)

Query: 210 EHGDAVTGLAV--NNGLIYSVSWDKSLKIWRA---SDLRCLESIKAHEDAVNAVAVSAGG 264
           +H + V  L +  NNG +YS   D  +++W     S  + ++S++ H D VN + +   G
Sbjct: 26  QHRNGVNALQLDANNGKLYSAGRDAIIRVWNTRTDSSEKYIQSMEHHNDWVNDIVLCCNG 85

Query: 265 -TVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILV 323
             + + S D  ++VW    N ++   ++TL  H+  V ALA + D   + S   D++I +
Sbjct: 86  RNLISASCDTTVKVW----NAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFL 141

Query: 324 WDRE-----DSANHMVVTGALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRF 376
           WD        ++N+ V T +L G   +I  L +N +G +++SGS +  +RIW    D R 
Sbjct: 142 WDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIW----DPR- 196

Query: 377 GCLAV--LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
            C+ +  L GHT+ V+ L    +  Q     V SGS DG I+ W +
Sbjct: 197 TCMRIMKLRGHTENVRCLVVSPDGNQ-----VVSGSSDGTIKVWNL 237

Regulator of deubiquitinating complexes. Activates deubiquitination by increasing the catalytic turnover without increasing the affinity of deubiquitinating enzymes for the substrate.

Drosophila sechellia (taxid: 7238)

>sp|B3MET8|WDR48_DROAN WD repeat-containing protein 48 homolog OS=Drosophila ananassae GN=GF12420 PE=3 SV=1

 Score = 87.4 bits (215), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 115/226 (50%), Gaps = 29/226 (12%)

Query: 210 EHGDAVTGLAV--NNGLIYSVSWDKSLKIWRA---SDLRCLESIKAHEDAVNAVAVSAGG 264
           +H + V  L +  NNG +YS   D  +++W     S+ + ++S++ H D VN + +   G
Sbjct: 26  QHRNGVNALQLDANNGKLYSAGRDAIIRVWNTRTESNEKYIQSMEHHNDWVNDIVLCCNG 85

Query: 265 -TVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILV 323
             + + S D  ++VW    N ++   ++TL  H+  V ALA + D   + S   D++I +
Sbjct: 86  RNLISASCDTTVKVW----NAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFL 141

Query: 324 WDRE-----DSANHMVVTGALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRF 376
           WD        ++N+ V T +L G   +I  L +N +G +++SGS +  +RIW    D R 
Sbjct: 142 WDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIW----DPR- 196

Query: 377 GCL--AVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
            C+    L GHT+ V+ L    +  Q     V SGS DG I+ W +
Sbjct: 197 TCMRSMKLRGHTENVRCLVVSPDGNQ-----VVSGSSDGTIKVWNL 237

Regulator of deubiquitinating complexes. Activates deubiquitination by increasing the catalytic turnover without increasing the affinity of deubiquitinating enzymes for the substrate.

Drosophila ananassae (taxid: 7217)

>sp|Q09990|LIN23_CAEEL F-box/WD repeat-containing protein lin-23 OS=Caenorhabditis elegans GN=lin-23 PE=1 SV=2

 Score = 86.7 bits (213), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 105/213 (49%), Gaps = 18/213 (8%)

Query: 211 HGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGS 270
           H  +V  L  +N +I S S D ++++W      C++++  H +AV  +   A G + T S
Sbjct: 261 HTGSVLCLQYDNRVIISGSSDATVRVWDVETGECIKTLIHHCEAVLHLRF-ANGIMVTCS 319

Query: 271 ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSA 330
            DR I VW    + +   +   L  H++AVN +   D   V  SG  DR+I VW    S 
Sbjct: 320 KDRSIAVWDM-VSPRDITIRRVLVGHRAAVNVVDFDDRYIVSASG--DRTIKVW----SM 372

Query: 331 NHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVK 390
           + +     L GH + I CL     L++SGS+D T+R+W   S     CL VLEGH + V+
Sbjct: 373 DTLEFVRTLAGHRRGIACLQYRGRLVVSGSSDNTIRLWDIHSG---VCLRVLEGHEELVR 429

Query: 391 SLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423
            +    +        + SG+ DG+I+ W +  +
Sbjct: 430 CIRFDEKR-------IVSGAYDGKIKVWDLQAA 455

Functions cell autonomously to negatively regulate cell cycle progression. Required to restrain cell proliferation in response to developmental cues. Probably recognizes and binds to some proteins and promotes their ubiquitination and degradation.

Caenorhabditis elegans (taxid: 6239)

>sp|B3NSK1|WDR48_DROER WD repeat-containing protein 48 homolog OS=Drosophila erecta GN=GG22678 PE=3 SV=1

 Score = 86.3 bits (212), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 114/226 (50%), Gaps = 29/226 (12%)

Query: 210 EHGDAVTGLAV--NNGLIYSVSWDKSLKIWRA---SDLRCLESIKAHEDAVNAVAVSAGG 264
           +H + V  L +  NNG +YS   D  +++W     S  + ++S++ H D VN + +   G
Sbjct: 26  QHRNGVNALQLDANNGKLYSAGRDAIIRVWNTRTDSSEKYIQSMEHHNDWVNDIVLCCNG 85

Query: 265 -TVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILV 323
             + + S D  ++VW    N ++   ++TL  H+  V ALA + D   + S   D++I +
Sbjct: 86  RNLISASCDTTVKVW----NAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFL 141

Query: 324 WDRE-----DSANHMVVTGALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRF 376
           WD        ++N+ V T +L G   +I  L +N +G +++SGS +  +RIW    D R 
Sbjct: 142 WDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIW----DPR- 196

Query: 377 GCL--AVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
            C+    L GHT+ V+ L    +  Q     V SGS DG I+ W +
Sbjct: 197 TCMRSMKLRGHTENVRCLVVSPDGNQ-----VVSGSSDGTIKVWNL 237

Regulator of deubiquitinating complexes. Activates deubiquitination by increasing the catalytic turnover without increasing the affinity of deubiquitinating enzymes for the substrate.

Drosophila erecta (taxid: 7220)

>sp|B4P7H8|WDR48_DROYA WD repeat-containing protein 48 homolog OS=Drosophila yakuba GN=GE13034 PE=3 SV=1

 Score = 86.3 bits (212), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 114/226 (50%), Gaps = 29/226 (12%)

Query: 210 EHGDAVTGLAV--NNGLIYSVSWDKSLKIWRA---SDLRCLESIKAHEDAVNAVAVSAGG 264
           +H + V  L +  NNG +YS   D  +++W     S  + ++S++ H D VN + +   G
Sbjct: 26  QHRNGVNALQLDANNGKLYSAGRDAIIRVWNTRTDSSEKYIQSMEHHNDWVNDIVLCCNG 85

Query: 265 -TVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILV 323
             + + S D  ++VW    N ++   ++TL  H+  V ALA + D   + S   D++I +
Sbjct: 86  RNLISASCDTTVKVW----NAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFL 141

Query: 324 WDRE-----DSANHMVVTGALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRF 376
           WD        ++N+ V T +L G   +I  L +N +G +++SGS +  +RIW    D R 
Sbjct: 142 WDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIW----DPR- 196

Query: 377 GCL--AVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
            C+    L GHT+ V+ L    +  Q     V SGS DG I+ W +
Sbjct: 197 TCMRSMKLRGHTENVRCLVVSPDGNQ-----VVSGSSDGTIKVWNL 237

Regulator of deubiquitinating complexes. Activates deubiquitination by increasing the catalytic turnover without increasing the affinity of deubiquitinating enzymes for the substrate.

Drosophila yakuba (taxid: 7245)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	437
224107729	433	predicted protein [Populus trichocarpa]	0.942	0.951	0.729	1e-160
255547986	438	F-box and wd40 domain protein, putative	0.858	0.856	0.720	1e-154
225424584	432	PREDICTED: myosin heavy chain kinase B-l	0.951	0.962	0.641	1e-149
296081392	480	unnamed protein product [Vitis vinifera]	0.951	0.866	0.641	1e-149
356528432	431	PREDICTED: myosin heavy chain kinase B-l	0.956	0.969	0.624	1e-145
449435003	445	PREDICTED: cell division control protein	0.970	0.952	0.635	1e-143
449527927	420	PREDICTED: LOW QUALITY PROTEIN: cell div	0.844	0.878	0.670	1e-138
297851126	418	transducin family protein [Arabidopsis l	0.892	0.933	0.644	1e-138
18395507	418	transducin/WD-40 repeat-containing prote	0.823	0.861	0.662	1e-135
225456830	400	PREDICTED: vegetative incompatibility pr	0.853	0.932	0.590	1e-119

>gi|224107729|ref|XP_002314580.1| predicted protein [Populus trichocarpa] gi|222863620|gb|EEF00751.1| predicted protein [Populus trichocarpa]

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 316/433 (72%), Positives = 359/433 (82%), Gaps = 21/433 (4%)

Query: 1   MRVRSWLA-TCATTTTANDSTVPFPKSQ----RHLVSDSSSSSDATGSSTSPSDRSYSVS 55
           MRVRSWLA TCAT +T  DST  F  +Q    +HL SD+SSSS++T S+TS +  + SVS
Sbjct: 1   MRVRSWLASTCATNSTL-DSTFSFSNNQSQPPKHLASDTSSSSNSTPSTTSTA--TSSVS 57

Query: 56  LQSNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSV--QLGHKLPIGCIAVHHNFLYA 113
           LQSNLSLQTLPSVPSLQK++P ET+N SS   LCINS+  Q  H LPI C+ V  N LYA
Sbjct: 58  LQSNLSLQTLPSVPSLQKITP-ETLNVSS---LCINSLKPQQNH-LPITCLVVQDNLLYA 112

Query: 114 ASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPT- 172
           ASSHEINVYDRT  +   +++FND DSS GSVKSV+FCDGKIFTAHQDCKIR W+++ T 
Sbjct: 113 ASSHEINVYDRTNLSL--VDSFNDKDSSLGSVKSVSFCDGKIFTAHQDCKIRAWKISSTT 170

Query: 173 KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN--NGLIYSVSW 230
           KHHKL T LPT+NDRL RF+LP +YV VRRHKK LWI+H DAVTGLAVN  NGLIYSVSW
Sbjct: 171 KHHKLVTVLPTLNDRLRRFVLPKNYVNVRRHKKLLWIKHADAVTGLAVNDNNGLIYSVSW 230

Query: 231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALI 290
           DKSLKIWRASDL+CLESIKAHEDAVNAVAVS  G VYTGSAD +IRVW KP NEKRH L+
Sbjct: 231 DKSLKIWRASDLQCLESIKAHEDAVNAVAVSVDGMVYTGSADCRIRVWGKPLNEKRHVLV 290

Query: 291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI 350
           ATLEKHKSAVNALAL DDG+VLFSGACDRSILVW+REDSANHMVVTGALRGH KAIL LI
Sbjct: 291 ATLEKHKSAVNALALKDDGSVLFSGACDRSILVWEREDSANHMVVTGALRGHNKAILSLI 350

Query: 351 NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGS 410
           NV+ LL+SGSADRTVRIW+ G DG++ CL+VL+GH KPVK+L AV  +  N VVSVFSG+
Sbjct: 351 NVSDLLLSGSADRTVRIWREGHDGKYICLSVLDGHRKPVKTLAAV-RDNDNDVVSVFSGT 409

Query: 411 LDGEIRAWQVSVS 423
           LDGEI+ WQ+SVS
Sbjct: 410 LDGEIKKWQLSVS 422

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547986|ref|XP_002515050.1| F-box and wd40 domain protein, putative [Ricinus communis] gi|223546101|gb|EEF47604.1| F-box and wd40 domain protein, putative [Ricinus communis]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 281/390 (72%), Positives = 319/390 (81%), Gaps = 15/390 (3%)

Query: 56  LQSNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAAS 115
           LQSNLSLQTLPSVPSLQKL+P ET+N S + H    S++L   L I C+A+H N LYAAS
Sbjct: 52  LQSNLSLQTLPSVPSLQKLTP-ETLNVSISYH-STTSLKLIPNLQITCLALHDNLLYAAS 109

Query: 116 SHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHH 175
           +H +NVYDRT  T   +++F+ N+SSSGS+KS+TFC+GKIFTAHQDCKIRVW+L     H
Sbjct: 110 THIVNVYDRT--TCHHLHSFSANNSSSGSIKSITFCNGKIFTAHQDCKIRVWKLIQNYQH 167

Query: 176 KLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLK 235
           KL T LPTV DRL + MLP +YV VRRHKK LWI+H DAVT LAVNNG IYSVSWDK LK
Sbjct: 168 KLLTVLPTVKDRLSKSMLPKNYVNVRRHKKMLWIQHADAVTSLAVNNGFIYSVSWDKCLK 227

Query: 236 IWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEK 295
           IWRASDLRCLES+KAHEDA+NAV VS  GTVYTGSAD KIRVWAKP + K+H L+ATLEK
Sbjct: 228 IWRASDLRCLESVKAHEDAINAVVVSVNGTVYTGSADCKIRVWAKPLDGKKHTLVATLEK 287

Query: 296 HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGL 355
           HKSAVNALAL+DDG+VLFSGACDRSILVW+REDSANHMVV+GALRGHGKAIL LINV+ L
Sbjct: 288 HKSAVNALALNDDGSVLFSGACDRSILVWEREDSANHMVVSGALRGHGKAILSLINVSDL 347

Query: 356 LMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEE---------GQNGVVSV 406
           L+SGSADRTVRIWQRG DG++ CLAVLEGH KPVKSL AV EE          +N VVSV
Sbjct: 348 LLSGSADRTVRIWQRGHDGKYCCLAVLEGHNKPVKSLAAVWEENDGNGNNHDNRNSVVSV 407

Query: 407 FSGSLDGEIRAWQVSVSCPNS--SPLNLQK 434
           FSGSLDGEI+AWQVSV  P+S  SP  + K
Sbjct: 408 FSGSLDGEIKAWQVSVFRPSSLVSPYQILK 437

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424584|ref|XP_002282147.1| PREDICTED: myosin heavy chain kinase B-like [Vitis vinifera]

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 275/429 (64%), Positives = 337/429 (78%), Gaps = 13/429 (3%)

Query: 1   MRVRSWLATCATTTTANDSTVPFPKSQRHL----VSDSSSSSDATGSSTSPSDRSYSVSL 56
           MRVRS L   A  +TA+DS +  P+ Q+       SD+S S +  GS ++  + S    L
Sbjct: 1   MRVRSCLP--AWISTADDSEISLPEIQKSFPKLFASDNSRSPEMLGSLSTSGETSCDSGL 58

Query: 57  QSNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAASS 116
           QS+LSLQTLPSVPSLQKLSP E +N S  SHLC+ +++    + I C+AV  + LYAAS 
Sbjct: 59  QSSLSLQTLPSVPSLQKLSP-EALNLS-VSHLCVATLK-PRPVHINCLAVSADSLYAASG 115

Query: 117 HEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHK 176
           ++I+V+D     +  ++ FN +DSSSGSVKS+ FCDGKIFT+HQ+ KIRVWQ+T +K H+
Sbjct: 116 YQIHVFDLK--NYAHLDAFNTDDSSSGSVKSLAFCDGKIFTSHQNGKIRVWQMTISKRHQ 173

Query: 177 LKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKI 236
           L  TLPTVNDRL  FMLP +YV+VRRHKK+LWI+H DAV+GL+V++G I SVSWDK  KI
Sbjct: 174 LVATLPTVNDRLRHFMLPKNYVSVRRHKKRLWIDHADAVSGLSVSDGFICSVSWDKCFKI 233

Query: 237 WRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKH 296
           WRASDLRCLES+KAH+DAVNAVA+S  G +YTGSAD +I+VWAK   EKRH ++ATLEKH
Sbjct: 234 WRASDLRCLESVKAHQDAVNAVAISGNGIIYTGSADCRIKVWAKASGEKRHTVVATLEKH 293

Query: 297 KSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLL 356
           KSAVNALAL+ DG++LFSGACDRSILVW+REDSANHMVVTGALRGH KAILCLI+V+ LL
Sbjct: 294 KSAVNALALTGDGSILFSGACDRSILVWEREDSANHMVVTGALRGHSKAILCLISVSDLL 353

Query: 357 MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT--EEGQNGVVSVFSGSLDGE 414
           +SGSADRTVRIWQ GSDGR+ CL+VLEGH KPVK+L AV+  E    G + VFSGSLDGE
Sbjct: 354 LSGSADRTVRIWQHGSDGRYCCLSVLEGHEKPVKALVAVSDGESKVAGAIRVFSGSLDGE 413

Query: 415 IRAWQVSVS 423
           I+ WQVSVS
Sbjct: 414 IKVWQVSVS 422

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081392|emb|CBI16825.3| unnamed protein product [Vitis vinifera]

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 275/429 (64%), Positives = 337/429 (78%), Gaps = 13/429 (3%)

Query: 1   MRVRSWLATCATTTTANDSTVPFPKSQRHL----VSDSSSSSDATGSSTSPSDRSYSVSL 56
           MRVRS L   A  +TA+DS +  P+ Q+       SD+S S +  GS ++  + S    L
Sbjct: 49  MRVRSCLP--AWISTADDSEISLPEIQKSFPKLFASDNSRSPEMLGSLSTSGETSCDSGL 106

Query: 57  QSNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAASS 116
           QS+LSLQTLPSVPSLQKLSP E +N S  SHLC+ +++    + I C+AV  + LYAAS 
Sbjct: 107 QSSLSLQTLPSVPSLQKLSP-EALNLS-VSHLCVATLK-PRPVHINCLAVSADSLYAASG 163

Query: 117 HEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHK 176
           ++I+V+D     +  ++ FN +DSSSGSVKS+ FCDGKIFT+HQ+ KIRVWQ+T +K H+
Sbjct: 164 YQIHVFDLK--NYAHLDAFNTDDSSSGSVKSLAFCDGKIFTSHQNGKIRVWQMTISKRHQ 221

Query: 177 LKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKI 236
           L  TLPTVNDRL  FMLP +YV+VRRHKK+LWI+H DAV+GL+V++G I SVSWDK  KI
Sbjct: 222 LVATLPTVNDRLRHFMLPKNYVSVRRHKKRLWIDHADAVSGLSVSDGFICSVSWDKCFKI 281

Query: 237 WRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKH 296
           WRASDLRCLES+KAH+DAVNAVA+S  G +YTGSAD +I+VWAK   EKRH ++ATLEKH
Sbjct: 282 WRASDLRCLESVKAHQDAVNAVAISGNGIIYTGSADCRIKVWAKASGEKRHTVVATLEKH 341

Query: 297 KSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLL 356
           KSAVNALAL+ DG++LFSGACDRSILVW+REDSANHMVVTGALRGH KAILCLI+V+ LL
Sbjct: 342 KSAVNALALTGDGSILFSGACDRSILVWEREDSANHMVVTGALRGHSKAILCLISVSDLL 401

Query: 357 MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT--EEGQNGVVSVFSGSLDGE 414
           +SGSADRTVRIWQ GSDGR+ CL+VLEGH KPVK+L AV+  E    G + VFSGSLDGE
Sbjct: 402 LSGSADRTVRIWQHGSDGRYCCLSVLEGHEKPVKALVAVSDGESKVAGAIRVFSGSLDGE 461

Query: 415 IRAWQVSVS 423
           I+ WQVSVS
Sbjct: 462 IKVWQVSVS 470

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528432|ref|XP_003532807.1| PREDICTED: myosin heavy chain kinase B-like [Glycine max]

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 271/434 (62%), Positives = 332/434 (76%), Gaps = 16/434 (3%)

Query: 1   MRVRSWLATCATT---TTANDSTVPFPKSQRHLVSDSSSSSDAT-GSSTSPSDRSYSVSL 56
           MR++ WL TC++    T  + ST+  PK + H   DS S S  +   ++S +  + + SL
Sbjct: 1   MRIQWWLNTCSSANCATATHHSTISLPKQKEHACDDSISYSSISEAPASSTTSNNSTSSL 60

Query: 57  QSNLSLQTLPSVPSLQKLSPDETINFS-SASHLCINSVQLGHKLPIGCIAVHHNFLYAAS 115
           +SNLS+QTLPSVPSLQ LSP    NF+ S SH C+ +++     P+  +AV++N LYAA+
Sbjct: 61  ESNLSIQTLPSVPSLQSLSPQ---NFTFSVSHHCVTTLEPHLSRPVTSLAVNNNLLYAAT 117

Query: 116 SHEINVYDRTGTTWTSINTFNDNDSS-SGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTK 173
            HEINVYDR   T T+I+ FN   +S S S K++ F +   + T HQDCKIRVWQ     
Sbjct: 118 DHEINVYDRH--TCTTIHAFNTQPTSTSNSTKTIAFSNNNTVITTHQDCKIRVWQNHKNI 175

Query: 174 HHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKS 233
           HH++  TLPTVNDRL RF+LP +YV +RRH+K+LWIEH DAVTGLAV+NG IYSVSWD++
Sbjct: 176 HHRMLATLPTVNDRLHRFLLPKNYVAIRRHEKRLWIEHADAVTGLAVSNGAIYSVSWDRT 235

Query: 234 LKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATL 293
           LKIWR SD RC+ES+KAHEDAVNAVAVS  GTVYTGSAD++IRVWA+P  EKRH L+ATL
Sbjct: 236 LKIWRLSDFRCVESLKAHEDAVNAVAVSNDGTVYTGSADKRIRVWARPAGEKRHVLVATL 295

Query: 294 EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA 353
           EKHKSAVNALAL+DD +VLFSGACDRSILVW+REDSANHMVV+GALRGH KAILCL+NV+
Sbjct: 296 EKHKSAVNALALNDDASVLFSGACDRSILVWEREDSANHMVVSGALRGHQKAILCLVNVS 355

Query: 354 GLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEE----GQNGVVSVFSG 409
            LL SGSADRTVRIW+R  DGR+GCLAVL+GH KPVKSL A+ EE         VSVFSG
Sbjct: 356 DLLFSGSADRTVRIWKRAYDGRYGCLAVLDGHRKPVKSLAAIPEEYDQTSPKCSVSVFSG 415

Query: 410 SLDGEIRAWQVSVS 423
           SLDGEI+ WQVS++
Sbjct: 416 SLDGEIKVWQVSIT 429

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435003|ref|XP_004135285.1| PREDICTED: cell division control protein 4-like [Cucumis sativus]

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 286/450 (63%), Positives = 343/450 (76%), Gaps = 26/450 (5%)

Query: 1   MRVRSWLATC---ATTTTANDSTVPFPKSQRHLVSDSSS---SSDATGSSTSPSDRSYSV 54
           MRVRSWL  C   A T+ A  + +  P+S   L+SD+SS   +S  + SS++PS  + S 
Sbjct: 1   MRVRSWLIPCSRAAATSAAEPNHIKPPQSSSFLMSDASSFSDTSAHSSSSSTPSSDTSSS 60

Query: 55  SLQSNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLG-HKLPIGCIAVHHNFLYA 113
           SLQ+NLSLQ+LPS+PSLQKL P  T +F    H+ ++   +   KLPI  +AVH  +LY 
Sbjct: 61  SLQTNLSLQSLPSIPSLQKL-PIPTDSF----HVTLSQFPVASFKLPISHLAVHGPYLYV 115

Query: 114 ASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTK 173
           A++HEINVYDR   T++ I  FN  DSSSGSVK + F   +I T+HQD KIRVW L   K
Sbjct: 116 ATAHEINVYDRL--TFSHITGFNAPDSSSGSVKGIAFLPRQILTSHQDGKIRVWNLLHKK 173

Query: 174 HHKLK--TTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWD 231
           +++ K   TLPTVNDRL RF+LP +YV VRRHKK LWI+H DAVTGLAVNNG IYSVSWD
Sbjct: 174 NNQFKLVNTLPTVNDRLRRFILPKNYVNVRRHKKLLWIQHADAVTGLAVNNGSIYSVSWD 233

Query: 232 KSLKIWRASDLRCLESIKA-HEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALI 290
           +SLKIWR SD RC+ES+KA HEDAVNAVAVSAGGTVYTGSADRKIRVWAKP  EKRH L+
Sbjct: 234 RSLKIWRGSDHRCVESVKAAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPEAEKRHVLV 293

Query: 291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI 350
           ATLEKHKSAVNALAL++DG++LFSGACDRS+LVW+REDSAN+M V GALRGH  AILCLI
Sbjct: 294 ATLEKHKSAVNALALNEDGSLLFSGACDRSVLVWEREDSANYMAVIGALRGHKNAILCLI 353

Query: 351 NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE-EGQ---NGVVSV 406
            V+ LL+SGSADRTVR+W+RG DG F CL VLEGH KPVKSL  V+E EG     GVVSV
Sbjct: 354 YVSDLLLSGSADRTVRVWRRGGDGSFSCLTVLEGHKKPVKSLVIVSEAEGMMRNGGVVSV 413

Query: 407 FSGSLDGEIRAWQVSVS-----CPNSSPLN 431
            SGSLDGE++AW++S+S      PNS+ +N
Sbjct: 414 CSGSLDGELKAWKISLSNLNSPLPNSNIMN 443

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527927|ref|XP_004170959.1| PREDICTED: LOW QUALITY PROTEIN: cell division control protein 4-like, partial [Cucumis sativus]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/389 (67%), Positives = 307/389 (78%), Gaps = 20/389 (5%)

Query: 56  LQSNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLG-HKLPIGCIAVHHNFLYAA 114
           LQ+NLSLQ+LPS+PSLQKL P  T +F    H+ ++   +   KLPI  +AVH  +LY A
Sbjct: 37  LQTNLSLQSLPSIPSLQKL-PIPTDSF----HVTLSQFPVASFKLPISHLAVHGPYLYVA 91

Query: 115 SSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKH 174
           ++HEINVYDR   T++ I  FN  DSSSGSVK + F   +I T+HQD KIRVW L   K+
Sbjct: 92  TAHEINVYDRL--TFSHITGFNAPDSSSGSVKGIAFLPRQILTSHQDGKIRVWNLLHKKN 149

Query: 175 HKLK--TTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDK 232
           ++ K   TLPTVNDRL RF+LP +YV VRRHKK LWI+H DAVTGLAVNNG IYSVSWD+
Sbjct: 150 NQFKLVNTLPTVNDRLRRFILPKNYVNVRRHKKLLWIQHADAVTGLAVNNGSIYSVSWDR 209

Query: 233 SLKIWRASDLRCLESIKA-HEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIA 291
           SLKIWR SD RC+ES+KA HEDAVNAVAVSAGGTVYTGSADRKIRVWAKP  EKRH L+A
Sbjct: 210 SLKIWRGSDHRCVESVKAAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPEAEKRHVLVA 269

Query: 292 TLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLIN 351
           TLEKHKSAVNALAL++DG++LFSGACDRS+LVW+REDSAN+M V GALRGH  AILCLI 
Sbjct: 270 TLEKHKSAVNALALNEDGSLLFSGACDRSVLVWEREDSANYMAVIGALRGHKNAILCLIY 329

Query: 352 VAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE-EGQ---NGVVSVF 407
           V+ LL+SGSADRTVR+W+RG DG F CL VLEGH KPVKSL  V+E EG     GVVSV 
Sbjct: 330 VSDLLLSGSADRTVRVWRRGGDGSFSCLTVLEGHKKPVKSLVIVSEAEGMMRNGGVVSVC 389

Query: 408 SGSLDGEIRAWQVSVS-----CPNSSPLN 431
           SGSLDGE++AW++S+S      PNS+ +N
Sbjct: 390 SGSLDGELKAWKISLSNLNSPLPNSNIMN 418

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851126|ref|XP_002893444.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297339286|gb|EFH69703.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 265/411 (64%), Positives = 315/411 (76%), Gaps = 21/411 (5%)

Query: 24  PKSQRHLVSD-----SSSSSDATGSSTSPSDRSYSVSLQSNLSLQTLPSVPSLQKLSPDE 78
           PKS +HL SD     SSS SD T  S+S         L S+LSLQTLPSVPSLQK+ P  
Sbjct: 16  PKSPKHLDSDESFTLSSSLSDVTTGSSS---------LHSSLSLQTLPSVPSLQKI-PST 65

Query: 79  TINFSSASHLCINSVQLGHK-LPIGCIAVHHNFLYAASSHEINVYDRTGTTWTSINTFND 137
           T+   + SH   +S +L  + LP+ C+AV+  +L+A S HE+++YDR       ++TFN 
Sbjct: 66  TV---TVSHCVTSSFKLRERSLPVTCLAVNGGYLFAVSGHEVSIYDRD--MCAHLDTFNG 120

Query: 138 NDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSY 197
            D  SG+VKS+ F   KIFTAHQD KI VW+LT    +K  TTLPT+NDRL RF LP +Y
Sbjct: 121 QDPFSGTVKSIGFSGEKIFTAHQDGKIGVWKLTAKSGYKQLTTLPTLNDRLRRFALPKNY 180

Query: 198 VTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNA 257
           V VRRHKK+LWIEH DAVT LAVNNG IYSVSWDK+LKIWRASDLRC ESIKAH+DAVNA
Sbjct: 181 VQVRRHKKRLWIEHADAVTALAVNNGFIYSVSWDKTLKIWRASDLRCKESIKAHDDAVNA 240

Query: 258 VAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC 317
           VAVS  GTVYTGSADR+IRVWAKP  EKRH L+ATLEKHKSAVNALAL+DDG+VLFSG+C
Sbjct: 241 VAVSTNGTVYTGSADRRIRVWAKPTGEKRHRLVATLEKHKSAVNALALNDDGSVLFSGSC 300

Query: 318 DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFG 377
           DRSILVW+RED++N+M V GALRGH KAIL L NV+ LL+SGSADRTVRIW+RG D  + 
Sbjct: 301 DRSILVWEREDTSNYMAVRGALRGHDKAILSLFNVSDLLLSGSADRTVRIWRRGPDSSYS 360

Query: 378 CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSS 428
           CL VL GHTKPVKSL AV E+  + VVS+ SGSLDGE++ W+VSV+ P++S
Sbjct: 361 CLEVLSGHTKPVKSLAAVREKELDDVVSIVSGSLDGEVKCWKVSVTKPDNS 411

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395507|ref|NP_564219.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|9743339|gb|AAF97963.1|AC000103_13 F21J9.19 [Arabidopsis thaliana] gi|15028341|gb|AAK76647.1| unknown protein [Arabidopsis thaliana] gi|19310649|gb|AAL85055.1| unknown protein [Arabidopsis thaliana] gi|332192423|gb|AEE30544.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 243/367 (66%), Positives = 292/367 (79%), Gaps = 7/367 (1%)

Query: 63  QTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHK-LPIGCIAVHHNFLYAASSHEINV 121
           QTLPSVPSLQK+ P  T+   + SH   +S +L  + LP+ C+AV+  +L+A S HE+++
Sbjct: 51  QTLPSVPSLQKI-PSTTV---TVSHSVTSSFKLRERSLPVTCLAVNGGYLFAVSGHEVSI 106

Query: 122 YDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTL 181
           YDR       ++TFN  D  SG+VKSV F   KIFTAHQD KI VW+LT    +K  TTL
Sbjct: 107 YDRD--MCAHLDTFNGQDPFSGTVKSVGFSGEKIFTAHQDGKIGVWKLTAKSGYKQLTTL 164

Query: 182 PTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASD 241
           PT+NDRL RF LP +YV VRRHKK+LWIEH DAVT LAV++G IYSVSWDK+LKIWRASD
Sbjct: 165 PTLNDRLRRFALPKNYVQVRRHKKRLWIEHADAVTALAVSDGFIYSVSWDKTLKIWRASD 224

Query: 242 LRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVN 301
           LRC ESIKAH+DAVNA+AVS  GTVYTGSADR+IRVWAKP  EKRH L+ATLEKHKSAVN
Sbjct: 225 LRCKESIKAHDDAVNAIAVSTNGTVYTGSADRRIRVWAKPTGEKRHTLVATLEKHKSAVN 284

Query: 302 ALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSA 361
           ALAL+DDG+VLFSG+CDRSILVW+RED++N+M V GALRGH KAIL L NV+ LL+SGSA
Sbjct: 285 ALALNDDGSVLFSGSCDRSILVWEREDTSNYMAVRGALRGHDKAILSLFNVSDLLLSGSA 344

Query: 362 DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
           DRTVRIW+RG D  + CL VL GHTKPVKSL AV E+  + VVS+ SGSLDGE++ W+VS
Sbjct: 345 DRTVRIWRRGPDSSYSCLEVLSGHTKPVKSLAAVREKELDDVVSIISGSLDGEVKCWKVS 404

Query: 422 VSCPNSS 428
           V+ P++S
Sbjct: 405 VTKPDNS 411

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456830|ref|XP_002276016.1| PREDICTED: vegetative incompatibility protein HET-E-1 [Vitis vinifera] gi|297733658|emb|CBI14905.3| unnamed protein product [Vitis vinifera]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/388 (59%), Positives = 280/388 (72%), Gaps = 15/388 (3%)

Query: 37  SSDATGSSTSPSDRSYSVSLQSNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLG 96
           +SD + +S +PS         S LS +T     SLQ  SP E+ N    SHLC++S++  
Sbjct: 21  TSDTSINSETPS--------TSTLSQETTSFTASLQSRSP-ESRNVV-VSHLCVSSLRT- 69

Query: 97  HKLP-IGCIAVHHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKI 155
              P I C+AVH  FLYAAS  +I+VYD T  T T I+TF +N  +SGSVKS+ F +GKI
Sbjct: 70  -LTPHISCLAVHEKFLYAASGEDIHVYDLT--THTHIDTFRNNKPTSGSVKSIAFHEGKI 126

Query: 156 FTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV 215
           FTAHQD KIRVW++T +K H+L +TLPTV D L R +LP +YV VRRHKK+LWIEH DAV
Sbjct: 127 FTAHQDSKIRVWRITASKRHRLISTLPTVKDFLRRSILPKNYVRVRRHKKRLWIEHNDAV 186

Query: 216 TGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKI 275
           +GLA+  G +YS SWDKS KIWR SDLRC+ES+KAH+DAVNAVAVSA GTVYT SAD  I
Sbjct: 187 SGLAMAEGFMYSASWDKSFKIWRTSDLRCVESVKAHDDAVNAVAVSASGTVYTASADGCI 246

Query: 276 RVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVV 335
           RVW +   E+ H LI TLEKHKS VNALALS DG+ LFSG C+  ILVW+RE+SANHM  
Sbjct: 247 RVWERTGEERTHTLITTLEKHKSTVNALALSGDGSSLFSGGCESWILVWEREESANHMAA 306

Query: 336 TGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAV 395
           T AL GH   +LCLI V  +++SGS+DRTVRIW+ G DGR+ C  +LEGH KPVKSL AV
Sbjct: 307 TQALVGHTGPVLCLITVNNMIISGSSDRTVRIWRPGVDGRYHCTLMLEGHVKPVKSLVAV 366

Query: 396 TEEGQNGVVSVFSGSLDGEIRAWQVSVS 423
           +      VVS+ SGSLDGEI+ W+VS +
Sbjct: 367 SSGTSYDVVSICSGSLDGEIKVWEVSAA 394

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	437
TAIR|locus:2024031	418	AT1G24530 "AT1G24530" [Arabido	0.903	0.944	0.608	2.6e-125
TAIR|locus:2032452	415	AT1G24130 "AT1G24130" [Arabido	0.835	0.879	0.464	6e-80
TAIR|locus:2170061	388	AT5G50120 "AT5G50120" [Arabido	0.636	0.716	0.456	1.1e-68
TAIR|locus:2066276	465	AT2G26490 "AT2G26490" [Arabido	0.750	0.705	0.371	7.5e-57
TAIR|locus:2085929	473	AT3G18950 "AT3G18950" [Arabido	0.668	0.617	0.399	1.4e-55
TAIR|locus:2010157	471	AT1G49450 "AT1G49450" [Arabido	0.663	0.615	0.394	1.3e-54
TAIR|locus:2015423	351	AT1G47610 "AT1G47610" [Arabido	0.748	0.931	0.382	2.1e-54
TAIR|locus:2074825	469	AT3G50390 "AT3G50390" [Arabido	0.796	0.742	0.375	4.3e-54
TAIR|locus:2083710	415	AT3G51930 "AT3G51930" [Arabido	0.736	0.775	0.360	5.6e-52
TAIR|locus:2116194	495	AT4G34380 "AT4G34380" [Arabido	0.720	0.636	0.352	3.7e-48

TAIR|locus:2024031 AT1G24530 "AT1G24530" [Arabidopsis thaliana (taxid:3702)]

 Score = 1231 (438.4 bits), Expect = 2.6e-125, P = 2.6e-125
 Identities = 247/406 (60%), Positives = 297/406 (73%)

Query:    24 PKSQRHLVXXXXXXXXXXXXXXXXXXRSYSVSLQSNLSLQTLPSVPSLQKLSPDETINFS 83
             PKS +HL                      S SL S+LSLQTLPSVPSLQK+ P  T+   
Sbjct:    16 PKSPKHLDSGESATSSSSLSDVTTG----SSSLHSSLSLQTLPSVPSLQKI-PSTTV--- 67

Query:    84 SASHLCINSVQLGHK-LPIGCIAVHHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSS 142
             + SH   +S +L  + LP+ C+AV+  +L+A S HE+++YDR       ++TFN  D  S
Sbjct:    68 TVSHSVTSSFKLRERSLPVTCLAVNGGYLFAVSGHEVSIYDRD--MCAHLDTFNGQDPFS 125

Query:   143 GSVKSVTFCDGKIFTAHQDCKIRVWQXXXXXXXXXXXXXXXVNDRLLRFMLPNSYVTVRR 202
             G+VKSV F   KIFTAHQD KI VW+               +NDRL RF LP +YV VRR
Sbjct:   126 GTVKSVGFSGEKIFTAHQDGKIGVWKLTAKSGYKQLTTLPTLNDRLRRFALPKNYVQVRR 185

Query:   203 HKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA 262
             HKK+LWIEH DAVT LAV++G IYSVSWDK+LKIWRASDLRC ESIKAH+DAVNA+AVS 
Sbjct:   186 HKKRLWIEHADAVTALAVSDGFIYSVSWDKTLKIWRASDLRCKESIKAHDDAVNAIAVST 245

Query:   263 GGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSIL 322
              GTVYTGSADR+IRVWAKP  EKRH L+ATLEKHKSAVNALAL+DDG+VLFSG+CDRSIL
Sbjct:   246 NGTVYTGSADRRIRVWAKPTGEKRHTLVATLEKHKSAVNALALNDDGSVLFSGSCDRSIL 305

Query:   323 VWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVL 382
             VW+RED++N+M V GALRGH KAIL L NV+ LL+SGSADRTVRIW+RG D  + CL VL
Sbjct:   306 VWEREDTSNYMAVRGALRGHDKAILSLFNVSDLLLSGSADRTVRIWRRGPDSSYSCLEVL 365

Query:   383 EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSS 428
              GHTKPVKSL AV E+  + VVS+ SGSLDGE++ W+VSV+ P++S
Sbjct:   366 SGHTKPVKSLAAVREKELDDVVSIISGSLDGEVKCWKVSVTKPDNS 411

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2032452 AT1G24130 "AT1G24130" [Arabidopsis thaliana (taxid:3702)]

 Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
 Identities = 184/396 (46%), Positives = 245/396 (61%)

Query:    50 RSYSVSLQSNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVHHN 109
             +S S +  S LS  +LP VPSL           SS  H C+ +++      +  +AV   
Sbjct:    27 QSESSTSSSLLSQPSLPLVPSLSFQHQS-----SSVDHHCLATLK-DKSSYVSSLAVSDK 80

Query:   110 FLYAASSH-EINVYDRTGTTWTSINTFNDND---SSSGSVKSVTFCDGKIFTAHQDCKIR 165
              LY  SS+ EI V+ R        +T +D +   + +G VKS+     K+ +AHQD KIR
Sbjct:    81 LLYTGSSNSEIRVWPREPPFSPEYSTGDDRNVVANGNGGVKSLVILGDKLISAHQDHKIR 140

Query:   166 VWQXXXXXXXXXX-----XXXXXVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV 220
             VW+                    +NDR        SYV VRRHKK  W+ H DAV+ LA+
Sbjct:   141 VWKIIDESNRRGQKYKCVATLPTMNDRFKTLFSSKSYVEVRRHKKCTWVHHVDAVSSLAL 200

Query:   221 NN--GLIYSVSWDKSLKIWRASDLRCLESI-KAHEDAVNAVAVSAGGTVYTGSADRKIRV 277
             +    L+YS SWD+S KIWR SD +CL+SI KAH+DA+NA+ VS  G VYTGSAD+KI+V
Sbjct:   201 SQDGSLLYSASWDRSFKIWRTSDFKCLDSIEKAHDDAINAIVVSKDGFVYTGSADKKIKV 260

Query:   278 WAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDR----EDSANHM 333
             W K   +K+H+L+ATL KH SAVNALA+S+DG VL+SGACDRSILVW+R    +D   HM
Sbjct:   261 WNK--KDKKHSLVATLTKHLSAVNALAISEDGKVLYSGACDRSILVWERLINGDDEELHM 318

Query:   334 VVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRG---SDGRFGCLAVLEGHTKPVK 390
              V GALRGH KAI+CL   + L++SGSAD+++R+W+RG    +G + CLAVLEGHTKPVK
Sbjct:   319 SVVGALRGHRKAIMCLAVASDLVLSGSADKSLRVWRRGLMEKEG-YSCLAVLEGHTKPVK 377

Query:   391 SLT-AVTEEGQNGVVS--VFSGSLDGEIRAWQVSVS 423
             SL  +V++   N   S  V+SGSLD  ++ W + VS
Sbjct:   378 SLAVSVSDSDSNSDYSCMVYSGSLDLSLKVWNLRVS 413

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2170061 AT5G50120 "AT5G50120" [Arabidopsis thaliana (taxid:3702)]

 Score = 673 (242.0 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
 Identities = 137/300 (45%), Positives = 197/300 (65%)

Query:   143 GSVKSVTFCDGKIFTAHQDCKIRVW-------QXXXXXXXXXXXXXXXVNDRLLRFMLPN 195
             G+VKS+     K+FTAHQD KIRVW       +               ++DR  + ++P 
Sbjct:    89 GAVKSLVILADKLFTAHQDHKIRVWKINDVVEEDVGGKKYMHLATMPTISDRFAKCLMPK 148

Query:   196 SYVTVRRHKKKLWIEHGDAVTGLAVN-NG-LIYSVSWDKSLKIWRASDLRCLESI-KAHE 252
             + V +RRHKK  W+ H DAV+GLA++ +G L+YSVSWD++LKIWR +D +CLES   AH+
Sbjct:   149 NQVEIRRHKKASWVHHVDAVSGLALSRDGTLLYSVSWDRTLKIWRTTDFKCLESFTNAHD 208

Query:   253 DAVNAVAVSAGGTVYTGSADRKIRVWAKPFNE------KRHALIATLEKHKSAVNALALS 306
             DA+NAVA+S  G +YTGS+D++I+VW K  NE      ++H+L+A L +H S +NALALS
Sbjct:   209 DAINAVALSENGDIYTGSSDQRIKVWRKNINEENVKKKRKHSLVAILSEHNSGINALALS 268

Query:   307 D-DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTV 365
               +G++L SG  D SILVW+R+D  + +VV G LRGH +++LCL  V+ +L SGSAD+TV
Sbjct:   269 GTNGSLLHSGGSDGSILVWERDDGGD-IVVVGMLRGHTESVLCLAVVSDILCSGSADKTV 327

Query:   366 RIWQRGSDGRFGCLAVLEGHTKPVKSLTAV---TEEGQNGVVSVFSGSLDGEIRAWQVSV 422
             R+W+  +   + CLA+LEGH  PVK LT     + +       ++SG LD +++ WQV V
Sbjct:   328 RLWKCSAKD-YSCLAMLEGHLGPVKCLTGAFRDSRKADEASYHIYSGGLDSQVKVWQVLV 386

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2066276 AT2G26490 "AT2G26490" [Arabidopsis thaliana (taxid:3702)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 130/350 (37%), Positives = 203/350 (58%)

Query:   101 IGCIAVHHNFLYAASSHEINVYDRTGT----TWTSINTFNDNDSSSGSVKSVTFCDGKIF 156
             IG +      +Y+ ++ +  +Y  + +     W ++  F+    +SG VK++     KIF
Sbjct:    89 IGSLVREEGHIYSLAATKDLLYTGSDSKNIRVWKNLKEFSAFKCNSGLVKAIVISGEKIF 148

Query:   157 TAHQDCKIRVWQXXXXXXXXXXXXXX--XVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA 214
             T HQD KIRVW+                 + D     + P +YV V++H+  LWI+H DA
Sbjct:   149 TGHQDGKIRVWKVSPKNQSLHKRSGTLPTLKDIFKASLKPRNYVEVKKHRTALWIKHADA 208

Query:   215 VTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSAD 272
             V+ L++N+  GL+YS SWD+++K+WR +D +CLESI AH+DAVN+V  +    V++GSAD
Sbjct:   209 VSCLSLNDEQGLLYSASWDRTIKVWRIADSKCLESIPAHDDAVNSVVSTTEAIVFSGSAD 268

Query:   273 RKIRVWAKPFNEK--RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSA 330
               ++ W +    K  +H L+ TL K +SAV ALA+S +G  ++ G+ D  +  W+RE   
Sbjct:   269 GTVKAWKRDQQGKYTKHTLMQTLTKQESAVTALAVSKNGAAVYFGSSDGLVNFWEREKQL 328

Query:   331 NHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFG-CLAVLEGHTKP 388
             N+    G L+GH  A+LCL  VAG L+ SGSAD+T+ +W+R  DG    CL+VL GHT P
Sbjct:   329 NY---GGILKGHKLAVLCL-EVAGSLVFSGSADKTICVWKR--DGNIHTCLSVLTGHTGP 382

Query:   389 VKSLTAVTE----EGQNGVVSVFSGSLDGEIRAWQVSVSCPNSSPLNLQK 434
             VK L    +    E ++    V+SGSLD  ++ W VS S  + + +++ +
Sbjct:   383 VKCLAVEADREASERRDKKWIVYSGSLDKSVKVWGVSESFIDMNQMSMMQ 432

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0006944 "cellular membrane fusion" evidence=RCA

TAIR|locus:2085929 AT3G18950 "AT3G18950" [Arabidopsis thaliana (taxid:3702)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 123/308 (39%), Positives = 179/308 (58%)

Query:   129 WTSINTFNDNDSSSGSVKSVTFC-DGKIFTAHQDCKIRVWQXXXXXXXXXXXXXX--XVN 185
             W  +       S+SG VK++    D +IFT HQD KIRVW+                 + 
Sbjct:   163 WKDLKDHTGFKSTSGLVKAIVITGDNRIFTGHQDGKIRVWRGSKRRTGGYSRIGSLPTLK 222

Query:   186 DRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR 243
             + L + + P +YV VRR K  L I H DAV+ L++N   GL+YS SWDK+LK+WR SD +
Sbjct:   223 EFLTKSVNPKNYVEVRRRKNVLKIRHYDAVSCLSLNEELGLLYSGSWDKTLKVWRLSDSK 282

Query:   244 CLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEK--RHALIATLEKHKSAVN 301
             CLESI+AH+DA+N VA      ++TGSAD  ++VW +    K  +H L+  L K ++AV 
Sbjct:   283 CLESIQAHDDAINTVAAGFDDLLFTGSADGTLKVWKRELQGKGTKHFLVNVLMKQENAVT 342

Query:   302 ALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSA 361
             ALA++    V++ G+ D ++  W+ +   +H    G LRGH  A+LCL     L++SG A
Sbjct:   343 ALAVNITAAVVYCGSSDGTVNFWEGQKYLSH---GGTLRGHRLAVLCLAAAGSLVLSGGA 399

Query:   362 DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQN----GVVS--VFSGSLDGEI 415
             D+ + +W+R  DG   CL+VL  H  PVK LTAV ++G+     G     V+SGSLD  +
Sbjct:   400 DKNICVWRRNGDGSHSCLSVLMDHVGPVKCLTAVEDDGEGHREKGDQKWIVYSGSLDKSV 459

Query:   416 RAWQVSVS 423
             + W+V+ S
Sbjct:   460 KVWRVTES 467

GO:0000166 "nucleotide binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2010157 AT1G49450 "AT1G49450" [Arabidopsis thaliana (taxid:3702)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 123/312 (39%), Positives = 177/312 (56%)

Query:   129 WTSINTFNDNDSSSGSVKSVTFC-DGKIFTAHQDCKIRVWQXXXXXXXXXXXXXX--XVN 185
             W  +  F+   S+SG VK++    D ++FT HQD KIRVW+                 + 
Sbjct:   159 WKDLKDFSGFKSTSGFVKAIVVTRDNRVFTGHQDGKIRVWRGSKKNPEKYSRVGSLPTLK 218

Query:   186 DRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR 243
             + L + + P +YV VRR K  L I H DAV+ L++N   GL+YS SWDK+LK+WR SD +
Sbjct:   219 EFLTKSVNPRNYVEVRRRKNVLKIRHFDAVSCLSLNEDLGLLYSGSWDKTLKVWRLSDSK 278

Query:   244 CLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFN--EKRHALIATLEKHKSAVN 301
             CLESI+AH+DAVN V       V+TGSAD  ++VW +     E +H L+  L K ++AV 
Sbjct:   279 CLESIEAHDDAVNTVVSGFDDLVFTGSADGTLKVWKREVQGKEMKHVLVQVLMKQENAVT 338

Query:   302 ALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSA 361
             ALA++    V++ G+ D ++  W+R+    H    G + GH  A+LCL     LL+SG A
Sbjct:   339 ALAVNLTDAVVYCGSSDGTVNFWERQKYLTHK---GTIHGHRMAVLCLATAGSLLLSGGA 395

Query:   362 DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE------EGQNGVVS------VFSG 409
             D+ + +W+R  DG   CL+VL  H  PVK L AV E      +G +G         V+SG
Sbjct:   396 DKNICVWKRNGDGSHTCLSVLMDHEGPVKCLAAVEEAEEDHNDGDDGGEKGDQRWIVYSG 455

Query:   410 SLDGEIRAWQVS 421
             SLD  ++ W+V+
Sbjct:   456 SLDNSVKVWRVT 467

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015423 AT1G47610 "AT1G47610" [Arabidopsis thaliana (taxid:3702)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 138/361 (38%), Positives = 202/361 (55%)

Query:    77 DETINFSSASHLCINSV-QLGHKLPIGCIAVHHNFLYAASSHEINVYDRTGTTWTSINTF 135
             D T  +S    L    V + GH   I  +A  ++ LY  S    N Y R    W ++N F
Sbjct:     5 DLTRGYSDGDSLVGEIVREEGH---IYSLAATNDLLYTGSD---NNYIRV---WKNLNEF 55

Query:   136 NDNDSSSGSVKSVTFC-DGKIFTAHQDCKIRVWQXXXXXXXXXXXXXX--XVNDRLLRFM 192
             +   S+SG VK++    + K+FT HQD KIRVW+                 + D L   +
Sbjct:    56 SGFKSNSGLVKAIVISREAKVFTGHQDGKIRVWKTSSKNPRVYTRAGSLPALKDVLKSSV 115

Query:   193 LPNSYVTVRRHKKKLWIEHGDAVT--GLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKA 250
              P++YV VRR +  LWI+H DAV+   LA + GL+YS SWD+++K+WR  DL+C+ESIKA
Sbjct:   116 KPSNYVEVRRCRTALWIKHSDAVSCLSLAEDQGLLYSASWDRTVKVWRIHDLKCIESIKA 175

Query:   251 HEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKR--HALIATLEKHKSAVNALALSDD 308
             H+DAVN+V  +A   V+TGSAD  ++VW +    KR  H+L  TL K +SAV AL  S  
Sbjct:   176 HDDAVNSVT-TAESLVFTGSADGTVKVWKREIRGKRTAHSLFQTLLKQESAVTALVTSH- 233

Query:   309 GTVLFSGACDRSILVWDREDSA--NHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVR 366
                ++SG+ D ++  W+  D     H  V    + H  A+LC+     LL SG+AD+ + 
Sbjct:   234 -MAVYSGSSDGAVNFWEMGDKKLLKHCEV---FKKHRLAVLCIAAAGKLLFSGAADKKIC 289

Query:   367 IWQRGSDGRFG-CLAVLEGHTKPVKSLTAVT------EEGQNGVVSVFSGSLDGEIRAWQ 419
             +W+R  +G+   C++VL GHT PVK L  V       E+G +G + ++SGSLD  ++ W+
Sbjct:   290 VWRR--EGKVHTCVSVLTGHTGPVKCLAVVEPSGGEEEDGGDGRLVLYSGSLDKSVKVWR 347

Query:   420 V 420
             V
Sbjct:   348 V 348

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2074825 AT3G50390 "AT3G50390" [Arabidopsis thaliana (taxid:3702)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 144/384 (37%), Positives = 208/384 (54%)

Query:    73 KLSPDETINFSS--ASHLCINSV--QLGHKLPIGCIAVHHNFLYAASSHEINVYDRTGTT 128
             K++ D T   S+  + ++ + S+  + GH   I  +A   + LY  S  + N+       
Sbjct:    72 KVTTDTTKEKSTNHSPNILLGSLVREEGH---IYSLATSGDLLYTGSDSK-NI-----RV 122

Query:   129 WTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQXXXXXXXXXXXXXXXVN--D 186
             W +   F+   S+SG VK++     KIFT HQD KIRVW+                N  D
Sbjct:   123 WKNHVEFSSFKSNSGLVKAIVLAGDKIFTGHQDGKIRVWKAASKESNVHRRVGTMPNLLD 182

Query:   187 RLLRFMLPNSYVT-VRRHKKK--LWIEHGDAVTGLAVNNG--LIYSVSWDKSLKIWRASD 241
              +   ++P+SY    RR++    L   H DA++ LA++    L+YS SWDK+ K+WR SD
Sbjct:   183 YIRNSIVPSSYFNFTRRNRSSAALGFRHLDAISCLALSEDKRLLYSGSWDKTFKVWRVSD 242

Query:   242 LRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEK--RHALIATLEKHKSA 299
             LRC+ES+ AHEDAVNAV     G V+TGSAD  ++VW +    K  +H    TL K   A
Sbjct:   243 LRCVESVNAHEDAVNAVVSGFDGLVFTGSADGTVKVWRREDQAKDTKHFFSETLLKQDCA 302

Query:   300 VNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSG 359
             V A+A+    T+++ G+ D ++  W+RE   N+M   G L+GH  A+LCL+    L+ SG
Sbjct:   303 VTAIAVDQSATLVYCGSSDGTVNFWERE---NNMKNGGVLKGHKLAVLCLVAAGNLMFSG 359

Query:   360 SADRTVRIWQRGSDG-RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVS-----VFSGSLDG 413
             SAD  +R+W+R   G    CL+VL GH  PVK L AV E  Q  V       V+SGSLD 
Sbjct:   360 SADLGIRVWRRPEGGGEHVCLSVLTGHAGPVKCL-AV-ERDQESVSGERRWIVYSGSLDR 417

Query:   414 EIRAWQVSVSCPNSSPLNLQKWNL 437
              ++ W+VS S P   P+  Q++ L
Sbjct:   418 SVKMWRVSESSP---PMVNQEFKL 438

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083710 AT3G51930 "AT3G51930" [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 125/347 (36%), Positives = 191/347 (55%)

Query:    92 SVQLGHKLPIGCIAVHHNFLYAASS-HEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTF 150
             +V   H   +  +A+   FL +AS   +I V+ +       +  F       GSVK++  
Sbjct:    55 AVLSAHVGSVSSLALCGEFLLSASQGKDIIVWQQP-----DLKIFAKFGQGDGSVKALVS 109

Query:   151 CDGKIFTAHQDCKIRVWQXXXXXXXXXXXXXXXV---NDRLLRFMLPNSYVTVRRHKKKL 207
                K+FTAHQD +IRVW+               +    D L +FM  ++YV  RR+ K+L
Sbjct:   110 VGSKVFTAHQDSRIRVWKVSRRNSENAFRLVDTLPTTKDYLGKFMKQSNYVQTRRNHKRL 169

Query:   208 WIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY 267
             WIEH D+++ LAV+ G+IYS SWDK+LK+WR SDL+CLESIKAH+DA+N + V+  G VY
Sbjct:   170 WIEHADSISCLAVHAGIIYSGSWDKTLKVWRLSDLKCLESIKAHDDAINGL-VAGDGRVY 228

Query:   268 TGSADRKIRVWAKPFNEK----------RHALIATLE-KHKSAVNALALSDDGTVLFSGA 316
             + SAD K+++W K   ++           H L ATLE + + +VN++ +S DG  ++ G 
Sbjct:   229 SASADGKVKIWGKEKRKQIESTSSSSSSLHVLKATLEGRAEVSVNSVVVSGDGNWVYGGG 288

Query:   317 CDRSILVWDREDSANHMVV--TG-ALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSD 373
              D  ++ W++++          G   RGH  A+LC+  V  ++ SGSAD+++ +W+R   
Sbjct:   289 SDGFVIGWEKKEKEGDFEEWRLGFETRGHNMAVLCMCVVGEMVCSGSADKSIGLWRREVT 348

Query:   374 GRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
             G      V+ GH  PVK L A       G + ++SG LD  +R W V
Sbjct:   349 GMLCKFGVIHGHEGPVKCLQASPNNVGAGFM-LYSGGLDKSLRVWWV 394

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

TAIR|locus:2116194 AT4G34380 "AT4G34380" [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 122/346 (35%), Positives = 191/346 (55%)

Query:   101 IGCIAVHHNFLYA-ASSHEINVYDRTGT----TWTSINTFNDNDSSSGSVKSVTFCDGKI 155
             IG I      +Y+ A+S ++ +Y  + +     W ++       SSSG +K++     +I
Sbjct:   118 IGSIVRKEGHIYSLAASGDL-LYTGSDSKNIRVWKNLKEHAGFKSSSGLIKAIVIFGDRI 176

Query:   156 FTAHQDCKIRVWQXXXXXXXXXXXXXXXVNDR-LLRFML-PNSYVTVRRHKKKLWIEHGD 213
             FT HQD KIR+W+                  + +++  + P  ++ VRR++  +  +H D
Sbjct:   177 FTGHQDGKIRIWKVSKRKPGKHKRVGTLPTFKSMVKSSVNPKHFMEVRRNRNSVKTKHND 236

Query:   214 AVTGLA--VNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSA 271
             AV+ L+  V  GL+YS SWD ++K+WR +D +CLESI AH+DA+N+V       V+TGSA
Sbjct:   237 AVSSLSLDVELGLLYSSSWDTTIKVWRIADSKCLESIHAHDDAINSVMSGFDDLVFTGSA 296

Query:   272 DRKIRVWAKPFNEK--RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDS 329
             D  ++VW +    K  +H L   L K ++AV ALA+    ++++ G+ D  +  W+R   
Sbjct:   297 DGTVKVWKRELQGKGTKHTLAQVLLKQENAVTALAVKSQSSIVYCGSSDGLVNYWER--- 353

Query:   330 ANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRG-SDGRFGCLAVLEGHTK 387
             +      G L+GH  A+LCL  +AG LL+SGSAD+ + +W+R  SD    CL+VL GH  
Sbjct:   354 SKRSFTGGILKGHKSAVLCL-GIAGNLLLSGSADKNICVWRRDPSDKSHQCLSVLTGHMG 412

Query:   388 PVKSLTAVTEE-----GQNGVVS-------VFSGSLDGEIRAWQVS 421
             PVK L AV EE     G    V+       ++SGSLD  ++ W+VS
Sbjct:   413 PVKCL-AVEEERACHQGAKASVAEGDRKWIIYSGSLDKSVKVWRVS 457

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	437
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-35
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-30
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-26
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-23
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-08
smart00320	40	smart00320, WD40, WD40 repeats	7e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-05
smart00320	40	smart00320, WD40, WD40 repeats	3e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  132 bits (334), Expect = 2e-35
 Identities = 90/335 (26%), Positives = 132/335 (39%), Gaps = 63/335 (18%)

Query: 96  GHKLPIGCIAVH--HNFLYAASS-HEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC- 151
           GH   + C+A       L   S    I V+D                  +G V+ V    
Sbjct: 7   GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK-----GHTGPVRDVAASA 61

Query: 152 -DGKIFTAHQDCKIRVWQL-TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI 209
               + +   D  IR+W L T      L                                
Sbjct: 62  DGTYLASGSSDKTIRLWDLETGECVRTLTG------------------------------ 91

Query: 210 EHGDAVTGLAV--NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVS-AGGTV 266
            H   V+ +A   +  ++ S S DK++K+W     +CL +++ H D VN+VA S  G  V
Sbjct: 92  -HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFV 150

Query: 267 YTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDR 326
            + S D  I++W    + +    +ATL  H   VN++A S DG  L S + D +I +WD 
Sbjct: 151 ASSSQDGTIKLW----DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL 206

Query: 327 EDSANHMVVTGALRGHGKAILCL--INVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEG 384
                       LRGH   +  +       LL SGS D T+R+W   +     C+  L G
Sbjct: 207 STGKCLGT----LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT---GECVQTLSG 259

Query: 385 HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419
           HT  V SL A + +G+     + SGS DG IR W 
Sbjct: 260 HTNSVTSL-AWSPDGK----RLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  118 bits (298), Expect = 2e-30
 Identities = 70/217 (32%), Positives = 104/217 (47%), Gaps = 23/217 (10%)

Query: 211 HGDAVTGLAVN--NGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY 267
           H   VT +A +    L+ + S D ++K+W       L ++K H   V  VA SA GT + 
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA 67

Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
           +GS+D+ IR+W     E       TL  H S V+++A S DG +L S + D++I VWD E
Sbjct: 68  SGSSDKTIRLWDLETGECVR----TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123

Query: 328 DSANHMVVTGALRGHGKAILCL--INVAGLLMSGSADRTVRIWQRGSDGRFG-CLAVLEG 384
                      LRGH   +  +        + S S D T+++W    D R G C+A L G
Sbjct: 124 TGKCLTT----LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW----DLRTGKCVATLTG 175

Query: 385 HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
           HT  V S+    +  +     + S S DG I+ W +S
Sbjct: 176 HTGEVNSVAFSPDGEK-----LLSSSSDGTIKLWDLS 207

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  107 bits (270), Expect = 2e-26
 Identities = 76/290 (26%), Positives = 116/290 (40%), Gaps = 55/290 (18%)

Query: 139 DSSSGSVKSVTFCD--GKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNS 196
              +G V  V F      + T   D  I+VW L   +   L  TL               
Sbjct: 6   KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE---LLRTL--------------- 47

Query: 197 YVTVRRHKKKLWIEHGDAVTGLAV--NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDA 254
                         H   V  +A   +   + S S DK++++W      C+ ++  H   
Sbjct: 48  ------------KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSY 95

Query: 255 VNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLF 313
           V++VA S  G  + + S D+ I+VW     +     + TL  H   VN++A S DGT + 
Sbjct: 96  VSSVAFSPDGRILSSSSRDKTIKVWDVETGK----CLTTLRGHTDWVNSVAFSPDGTFVA 151

Query: 314 SGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLLMSGSADRTVRIWQRG 371
           S + D +I +WD             L GH   +  +        L+S S+D T+++W   
Sbjct: 152 SSSQDGTIKLWD----LRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW--- 204

Query: 372 SDGRFG-CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
            D   G CL  L GH   V S+ A + +G      + SGS DG IR W +
Sbjct: 205 -DLSTGKCLGTLRGHENGVNSV-AFSPDGYL----LASGSEDGTIRVWDL 248

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 98.6 bits (246), Expect = 3e-23
 Identities = 59/181 (32%), Positives = 83/181 (45%), Gaps = 19/181 (10%)

Query: 244 CLESIKAHEDAVNAVAVSA-GGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNA 302
              ++K H   V  VA S  G  + TGS D  I+VW     E    L+ TL+ H   V  
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE----LLRTLKGHTGPVRD 56

Query: 303 LALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCL--INVAGLLMSGS 360
           +A S DGT L SG+ D++I +WD E           L GH   +  +       +L S S
Sbjct: 57  VAASADGTYLASGSSDKTIRLWDLETGE----CVRTLTGHTSYVSSVAFSPDGRILSSSS 112

Query: 361 ADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
            D+T+++W   +     CL  L GHT  V S+ A + +G      V S S DG I+ W +
Sbjct: 113 RDKTIKVWDVET---GKCLTTLRGHTDWVNSV-AFSPDGT----FVASSSQDGTIKLWDL 164

Query: 421 S 421
            
Sbjct: 165 R 165

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 78.6 bits (192), Expect = 9e-16
 Identities = 93/416 (22%), Positives = 158/416 (37%), Gaps = 40/416 (9%)

Query: 34  SSSSSDATGSSTSPSDRSYSVSLQSNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSV 93
              +S  +  + S   +   +    N              L      +   +     + +
Sbjct: 1   LVDNSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLL 60

Query: 94  QLGHKLPIGCIAVH---HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTF 150
             GH+  I  IA        L  +S   I ++D         +    +DSS   +   + 
Sbjct: 61  LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120

Query: 151 CDGKIFTA--HQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFM-LPNSYVTVRRHKKKL 207
               I  A    D  +++W L+            + +   L F        +       +
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180

Query: 208 WI-------------EHGDAVTGLAV---NNGLIYSVSWDKSLKIWRASDLRCLES-IKA 250
            +              H D V+ LA       LI S S D ++++W  S  + L S +  
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG 240

Query: 251 HEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGT 310
           H D+V +     G  + +GS+D  IR+W    +     L+ TL  H S+V ++A S DG 
Sbjct: 241 HSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSS---LLRTLSGHSSSVLSVAFSPDGK 297

Query: 311 VLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI---NVAGLLMSGSADRTVRI 367
           +L SG+ D ++ +WD E       +T  L+GH   +  L    + + L+  GS D T+R+
Sbjct: 298 LLASGSSDGTVRLWDLETGKLLSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355

Query: 368 WQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423
           W   +      L  LEGH+    ++ +V+      VVS  SGS DG +R W +S  
Sbjct: 356 WDLRTG---KPLKTLEGHS----NVLSVSFSPDGRVVS--SGSTDGTVRLWDLSTG 402

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 75.5 bits (184), Expect = 9e-15
 Identities = 103/444 (23%), Positives = 165/444 (37%), Gaps = 42/444 (9%)

Query: 12  TTTTANDSTVPFPKSQRHLVSDSSSSSDATGSSTSPSDRSYSVSLQSNLSLQTLPSVPSL 71
              + N  ++    S    +   +  SD+  S    S         S  S+   P    L
Sbjct: 21  LGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELL 80

Query: 72  QKLSPDETINF--SSASHLCINSVQLGHKLPIGCIAVHH----NFLYAASSHEINVYDR- 124
              S D TI           I S++  H   +  +A+      + L A+SS +  V    
Sbjct: 81  LSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWD 140

Query: 125 TGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKH-HKLKTTLPT 183
             T    I T   +  S  S+            +  D  I++W L   K    L      
Sbjct: 141 LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP 200

Query: 184 VN------DRLLRFMLPNSYVTVR--------RHKKKLWIEHGDAVTGLAVNNGLIYSVS 229
           V+      D  L     +S  T+R          +  L       V+  + +  L+ S S
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGS 260

Query: 230 WDKSLKIWRA-SDLRCLESIKAHEDAVNAVAVS-AGGTVYTGSADRKIRVWAKPFNEKRH 287
            D ++++W   S    L ++  H  +V +VA S  G  + +GS+D  +R+W       + 
Sbjct: 261 SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW--DLETGKL 318

Query: 288 ALIATLEKHKSAVNALALSDDGTVLFSGAC-DRSILVWDREDSANHMVVTGALRGHGKAI 346
               TL+ H+  V++L+ S DG++L SG   D +I +WD                    +
Sbjct: 319 LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT-----LEGHSNV 373

Query: 347 LCLINVAGLLM--SGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVV 404
           L +       +  SGS D TVR+W          L  L+GHT  V SL   + +G+    
Sbjct: 374 LSVSFSPDGRVVSSGSTDGTVRLW---DLSTGSLLRNLDGHTSRVTSL-DFSPDGK---- 425

Query: 405 SVFSGSLDGEIRAWQVSVSCPNSS 428
           S+ SGS D  IR W +  S  + S
Sbjct: 426 SLASGSSDNTIRLWDLKTSLKSVS 449

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 56.3 bits (134), Expect = 2e-08
 Identities = 59/282 (20%), Positives = 107/282 (37%), Gaps = 31/282 (10%)

Query: 77  DETINFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAASSHEINVYDRTGTTWT----SI 132
           D TI           S   GH  P+  +A   +     +S      D T   W      +
Sbjct: 177 DGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG---SSDGTIRLWDLSTGKL 233

Query: 133 NTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTV-------- 184
                +  S   V S +     + +   D  IR+W L  +       +  +         
Sbjct: 234 LRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS 293

Query: 185 -NDRLLRFMLPNSYVTVRRHKKKLWIE------HGDAVTGLAVN---NGLIYSVSWDKSL 234
            + +LL     +  V +   +    +       H   V+ L+ +   + L+   S D ++
Sbjct: 294 PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI 353

Query: 235 KIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY-TGSADRKIRVWAKPFNEKRHALIATL 293
           ++W     + L++++ H   V +V+ S  G V  +GS D  +R+W    +    +L+  L
Sbjct: 354 RLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLW----DLSTGSLLRNL 408

Query: 294 EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVV 335
           + H S V +L  S DG  L SG+ D +I +WD + S   +  
Sbjct: 409 DGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.1 bits (131), Expect = 3e-08
 Identities = 58/251 (23%), Positives = 107/251 (42%), Gaps = 19/251 (7%)

Query: 188 LLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLES 247
           L+     +S    +  KK       ++++ L++ +     +          +        
Sbjct: 1   LVDNSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLL 60

Query: 248 IKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALS 306
           ++ HED++ ++A S  G  + +GS+D  I++W    +     + +    H S+V+ LALS
Sbjct: 61  LRGHEDSITSIAFSPDGELLLSGSSDGTIKLW--DLDNGEKLIKSLEGLHDSSVSKLALS 118

Query: 307 D---DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI---NVAGLLMSGS 360
               +  +L S + D ++ +WD       +     L GH +++  L    +   L    S
Sbjct: 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRT---LEGHSESVTSLAFSPDGKLLASGSS 175

Query: 361 ADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
            D T+++W   +      L+ L GHT PV SL        +G + + SGS DG IR W +
Sbjct: 176 LDGTIKLWDLRTGK---PLSTLAGHTDPVSSLAFS----PDGGLLIASGSSDGTIRLWDL 228

Query: 421 SVSCPNSSPLN 431
           S      S L+
Sbjct: 229 STGKLLRSTLS 239

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.3 bits (100), Expect = 7e-06
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 289 LIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD 325
           L+ TL+ H   V ++A S DG  L SG+ D +I +WD
Sbjct: 4   LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query: 289 LIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD 325
           L+ TL+ H   V ++A S DG +L SG+ D ++ VWD
Sbjct: 3   LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 241 DLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVW 278
               L+++K H   V +VA S  G  + +GS D  I++W
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 243 RCLESIKAHEDAVNAVAVSA-GGTVYTGSADRKIRVW 278
           + L ++K H   V +VA S  G  + +GS D  +RVW
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	437
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0301	745	consensus Phospholipase A2-activating protein (con	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.98
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.98
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.98
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.98
KOG0289	506	consensus mRNA splicing factor [General function p	99.98
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.98
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
PTZ00420	568	coronin; Provisional	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.94
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.94
KOG2048	691	consensus WD40 repeat protein [General function pr	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG4328	498	consensus WD40 protein [Function unknown]	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.9
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.9
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.9
KOG1188	376	consensus WD40 repeat protein [General function pr	99.9
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.9
KOG4227	609	consensus WD40 repeat protein [General function pr	99.9
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.89
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.88
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.88
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.87
KOG1334	559	consensus WD40 repeat protein [General function pr	99.87
KOG1273	405	consensus WD40 repeat protein [General function pr	99.87
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.87
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG2096	420	consensus WD40 repeat protein [General function pr	99.86
KOG1310	758	consensus WD40 repeat protein [General function pr	99.86
KOG0649	325	consensus WD40 repeat protein [General function pr	99.86
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.86
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.85
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.85
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.85
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.85
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.83
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.83
KOG0649	325	consensus WD40 repeat protein [General function pr	99.83
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.82
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.82
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.82
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.82
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.82
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.82
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.81
KOG1963	792	consensus WD40 repeat protein [General function pr	99.81
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.81
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.8
COG2319	466	FOG: WD40 repeat [General function prediction only	99.8
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.8
PRK11028	330	6-phosphogluconolactonase; Provisional	99.79
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.79
KOG1188	376	consensus WD40 repeat protein [General function pr	99.78
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.78
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.78
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.77
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.77
PRK11028	330	6-phosphogluconolactonase; Provisional	99.76
KOG1963	792	consensus WD40 repeat protein [General function pr	99.74
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.73
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.72
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.72
KOG4227	609	consensus WD40 repeat protein [General function pr	99.72
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.72
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.7
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.7
KOG1334	559	consensus WD40 repeat protein [General function pr	99.69
KOG2321	703	consensus WD40 repeat protein [General function pr	99.68
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.67
PRK01742	429	tolB translocation protein TolB; Provisional	99.65
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.65
KOG2139	445	consensus WD40 repeat protein [General function pr	99.65
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.64
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.64
KOG1310	758	consensus WD40 repeat protein [General function pr	99.63
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.61
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.61
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.61
KOG2139	445	consensus WD40 repeat protein [General function pr	99.61
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.61
PRK01742	429	tolB translocation protein TolB; Provisional	99.6
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.59
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.54
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.53
PRK03629	429	tolB translocation protein TolB; Provisional	99.53
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.5
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.48
PRK04922	433	tolB translocation protein TolB; Provisional	99.47
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.47
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.45
KOG2321	703	consensus WD40 repeat protein [General function pr	99.44
PRK02889	427	tolB translocation protein TolB; Provisional	99.42
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.42
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.41
KOG4547	541	consensus WD40 repeat-containing protein [General	99.4
PRK05137	435	tolB translocation protein TolB; Provisional	99.4
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.4
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.39
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.39
KOG4547	541	consensus WD40 repeat-containing protein [General	99.38
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.38
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.37
PRK03629	429	tolB translocation protein TolB; Provisional	99.36
PRK04922	433	tolB translocation protein TolB; Provisional	99.35
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.35
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.34
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.33
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.33
PRK05137	435	tolB translocation protein TolB; Provisional	99.32
PRK02889	427	tolB translocation protein TolB; Provisional	99.32
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.31
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.31
KOG2315	566	consensus Predicted translation initiation factor	99.3
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.26
KOG2315	566	consensus Predicted translation initiation factor	99.26
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.24
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.23
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.22
PRK00178	430	tolB translocation protein TolB; Provisional	99.21
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.19
COG4946	668	Uncharacterized protein related to the periplasmic	99.18
PRK04792	448	tolB translocation protein TolB; Provisional	99.17
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.16
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.16
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.16
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.16
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.15
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.14
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.13
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.13
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.12
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.12
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.1
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.1
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.1
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.09
PRK00178	430	tolB translocation protein TolB; Provisional	99.09
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.05
PRK04792	448	tolB translocation protein TolB; Provisional	99.02
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.0
KOG2695	425	consensus WD40 repeat protein [General function pr	98.97
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.97
PRK01029	428	tolB translocation protein TolB; Provisional	98.97
KOG2314	698	consensus Translation initiation factor 3, subunit	98.96
KOG2695	425	consensus WD40 repeat protein [General function pr	98.92
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.91
PRK01029	428	tolB translocation protein TolB; Provisional	98.9
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.89
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.89
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.88
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.87
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.87
COG4946	668	Uncharacterized protein related to the periplasmic	98.87
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.87
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.85
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.85
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.83
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.82
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.82
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.81
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.79
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.78
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.76
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.75
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.71
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.67
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.65
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.65
KOG2314	698	consensus Translation initiation factor 3, subunit	98.62
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.61
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.6
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.55
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.54
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.54
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.52
PRK04043	419	tolB translocation protein TolB; Provisional	98.51
KOG3621	726	consensus WD40 repeat-containing protein [General	98.48
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.45
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.34
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.33
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.3
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.28
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.26
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.26
PRK04043	419	tolB translocation protein TolB; Provisional	98.24
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.24
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.19
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.16
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.15
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.13
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.12
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.12
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.11
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.11
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.11
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.09
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.08
KOG3621	726	consensus WD40 repeat-containing protein [General	98.05
PRK02888	635	nitrous-oxide reductase; Validated	97.93
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.92
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.89
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.88
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.87
PHA02713	557	hypothetical protein; Provisional	97.85
PHA02713	557	hypothetical protein; Provisional	97.8
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.79
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.79
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.77
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.71
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.67
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.66
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.6
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.59
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.56
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.56
KOG2444	238	consensus WD40 repeat protein [General function pr	97.55
COG5276	370	Uncharacterized conserved protein [Function unknow	97.53
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.53
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.52
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.49
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.47
COG3391	381	Uncharacterized conserved protein [Function unknow	97.41
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.33
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.17
PRK02888	635	nitrous-oxide reductase; Validated	97.16
COG5276	370	Uncharacterized conserved protein [Function unknow	97.08
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.07
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.06
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.01
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.0
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.98
KOG2395	644	consensus Protein involved in vacuole import and d	96.98
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.97
PHA03098	534	kelch-like protein; Provisional	96.94
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.88
PRK13616	591	lipoprotein LpqB; Provisional	96.83
PHA03098	534	kelch-like protein; Provisional	96.78
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.66
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.63
PRK13684	334	Ycf48-like protein; Provisional	96.6
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.53
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.5
KOG2395	644	consensus Protein involved in vacuole import and d	96.46
COG3391	381	Uncharacterized conserved protein [Function unknow	96.45
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.41
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.41
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.33
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.3
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.26
PRK13616	591	lipoprotein LpqB; Provisional	96.26
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.25
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.24
PHA02790	480	Kelch-like protein; Provisional	96.24
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.11
KOG2444	238	consensus WD40 repeat protein [General function pr	96.07
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.02
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.99
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.89
PHA02790	480	Kelch-like protein; Provisional	95.82
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.69
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.65
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.63
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.56
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.49
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.42
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.4
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	95.18
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	95.14
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.11
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.09
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.05
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.9
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.89
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.82
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.78
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.74
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.62
COG3292	671	Predicted periplasmic ligand-binding sensor domain	94.58
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.56
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.42
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.24
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	94.21
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.11
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.04
PF14727	418	PHTB1_N: PTHB1 N-terminus	93.98
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.96
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	93.85
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.85
KOG2247	615	consensus WD40 repeat-containing protein [General	93.69
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.36
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.29
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.24
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.82
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	92.72
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.71
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	92.62
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	92.43
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	92.37
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.63
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	91.47
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	90.87
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.09
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	89.84
KOG2247	615	consensus WD40 repeat-containing protein [General	89.71
PLN02153	341	epithiospecifier protein	89.39
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	89.39
PLN02153	341	epithiospecifier protein	89.38
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	89.27
COG5167	776	VID27 Protein involved in vacuole import and degra	89.11
PLN02193	470	nitrile-specifier protein	88.25
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	88.05
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	87.97
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	87.81
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	87.76
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	87.75
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	87.72
COG5167	776	VID27 Protein involved in vacuole import and degra	87.65
COG4590	733	ABC-type uncharacterized transport system, permeas	87.64
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	87.55
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	87.46
PLN00033	398	photosystem II stability/assembly factor; Provisio	87.45
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	87.02
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	86.7
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	86.66
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	86.62
COG1520	370	FOG: WD40-like repeat [Function unknown]	86.57
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	86.24
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.16
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	86.03
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	85.71
PF12768	281	Rax2: Cortical protein marker for cell polarity	85.61
PLN02193	470	nitrile-specifier protein	85.17
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	84.73
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	84.05
PRK13684	334	Ycf48-like protein; Provisional	83.35
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	82.95
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	82.8
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	82.76
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	82.58
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	82.49
PF12768	281	Rax2: Cortical protein marker for cell polarity	82.34
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	82.06
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	81.74
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	81.69
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	81.24
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	80.98
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	80.69
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	80.42
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	80.31

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.9e-52  Score=343.78  Aligned_cols=313  Identities=26%  Similarity=0.380  Sum_probs=279.0

Q ss_pred             cccceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeec
Q 013717           58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINT  134 (437)
Q Consensus        58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~  134 (437)
                      ...+++|.|....+++++.|.++++||.....+.....+|...|.|++|+  |..||+|+.| .|++||.++++ .....
T Consensus       117 ~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~-~~g~~  195 (480)
T KOG0271|consen  117 AVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ-QIGRA  195 (480)
T ss_pred             cEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC-ccccc
Confidence            44688999999999999999999999998855554444999999999999  9999999999 99999999873 33444


Q ss_pred             cccCCCCcccEEEEEEeCC-------eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeecccee
Q 013717          135 FNDNDSSSGSVKSVTFCDG-------KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKL  207 (437)
Q Consensus       135 ~~~~~~h~~~v~~l~~~~~-------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (437)
                      +   .+|...|++++|.|-       .|++++.||.|+|||+..+.....+                             
T Consensus       196 l---~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l-----------------------------  243 (480)
T KOG0271|consen  196 L---RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL-----------------------------  243 (480)
T ss_pred             c---cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe-----------------------------
Confidence            4   789999999999743       2999999999999999987655444                             


Q ss_pred             eecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecC-----------------------
Q 013717          208 WIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAG-----------------------  263 (437)
Q Consensus       208 ~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-----------------------  263 (437)
                       .+|..+|+|+.|.. +++++|+.|++|++|+...|++...+++|...|+.++.+-+                       
T Consensus       244 -sgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~  322 (480)
T KOG0271|consen  244 -SGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK  322 (480)
T ss_pred             -ccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence             37999999999997 99999999999999999999999999999999999998721                       


Q ss_pred             -------------C-eEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 013717          264 -------------G-TVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDS  329 (437)
Q Consensus       264 -------------~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (437)
                                   + ++++|+.|.++.+|+-.   ...+++..+.+|..-|+.+.|+||++++++++.|..|++||.+++
T Consensus       323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~---~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG  399 (480)
T KOG0271|consen  323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPF---KSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG  399 (480)
T ss_pred             HHHHHHHHhhccCcceeEEecCCceEEEeccc---ccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc
Confidence                         1 29999999999999743   334577788899999999999999999999999999999999999


Q ss_pred             ccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEE
Q 013717          330 ANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVF  407 (437)
Q Consensus       330 ~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~  407 (437)
                      +    +...+++|-..|..++|+.+  +|++|+.|.++++|++++.+   +...+.+|.+.|.++.|+|++.     .++
T Consensus       400 k----~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK---l~~DLpGh~DEVf~vDwspDG~-----rV~  467 (480)
T KOG0271|consen  400 K----FLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK---LKQDLPGHADEVFAVDWSPDGQ-----RVA  467 (480)
T ss_pred             c----hhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee---ecccCCCCCceEEEEEecCCCc-----eee
Confidence            8    77778999999999999877  99999999999999999876   8889999999999999999995     799


Q ss_pred             EecCCCcEEEEe
Q 013717          408 SGSLDGEIRAWQ  419 (437)
Q Consensus       408 s~~~dg~i~iw~  419 (437)
                      +|+.|..+++|.
T Consensus       468 sggkdkv~~lw~  479 (480)
T KOG0271|consen  468 SGGKDKVLRLWR  479 (480)
T ss_pred             cCCCceEEEeec
Confidence            999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.6e-49  Score=325.29  Aligned_cols=293  Identities=25%  Similarity=0.379  Sum_probs=258.0

Q ss_pred             CCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEe
Q 013717           86 SHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAH  159 (437)
Q Consensus        86 ~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~  159 (437)
                      ..-..|...+ ||.++|.|++|+  |..||+|+.| ++|+||+.+.  ....++   ++|...|.|++|+||+  |++|+
T Consensus       102 rpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te--Tp~~t~---KgH~~WVlcvawsPDgk~iASG~  176 (480)
T KOG0271|consen  102 RPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE--TPLFTC---KGHKNWVLCVAWSPDGKKIASGS  176 (480)
T ss_pred             cccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC--Ccceee---cCCccEEEEEEECCCcchhhccc
Confidence            4456677788 999999999999  8999999999 9999999993  455555   7899999999999887  99999


Q ss_pred             cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-------CeEEEEECCC
Q 013717          160 QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-------GLIYSVSWDK  232 (437)
Q Consensus       160 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~l~~~~~dg  232 (437)
                      .||.|++||..+++...                             +.+.+|...|++++|.|       ++|++++.||
T Consensus       177 ~dg~I~lwdpktg~~~g-----------------------------~~l~gH~K~It~Lawep~hl~p~~r~las~skDg  227 (480)
T KOG0271|consen  177 KDGSIRLWDPKTGQQIG-----------------------------RALRGHKKWITALAWEPLHLVPPCRRLASSSKDG  227 (480)
T ss_pred             cCCeEEEecCCCCCccc-----------------------------ccccCcccceeEEeecccccCCCccceecccCCC
Confidence            99999999999887432                             22357999999999977       7899999999


Q ss_pred             cEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEc------
Q 013717          233 SLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALS------  306 (437)
Q Consensus       233 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~------  306 (437)
                      .|+|||+..++++..+.+|..+|+|+.|--+|.+++|+.|++|++|+...    +.+.+.+++|...|+.++.+      
T Consensus       228 ~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~d----G~~~r~lkGHahwvN~lalsTdy~LR  303 (480)
T KOG0271|consen  228 SVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALD----GKLCRELKGHAHWVNHLALSTDYVLR  303 (480)
T ss_pred             CEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccc----hhHHHhhcccchheeeeeccchhhhh
Confidence            99999999999999999999999999999888899999999999997653    45788899999999999877      


Q ss_pred             -----cCCC-------------------------EEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--
Q 013717          307 -----DDGT-------------------------VLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--  354 (437)
Q Consensus       307 -----~~~~-------------------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--  354 (437)
                           |.++                         .|++|+.|.++.+|+....+.   .+....+|...|..+.|+|+  
T Consensus       304 tgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk---pi~rmtgHq~lVn~V~fSPd~r  380 (480)
T KOG0271|consen  304 TGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK---PITRMTGHQALVNHVSFSPDGR  380 (480)
T ss_pred             ccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc---chhhhhchhhheeeEEECCCcc
Confidence                 2233                         499999999999999865432   44457889999999988877  


Q ss_pred             EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCC
Q 013717          355 LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNS  427 (437)
Q Consensus       355 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  427 (437)
                      ++|+++.|..|++||-++++   .+..+++|-++|..++|+.|.     ++|++|+.|.++++|++++.+...
T Consensus       381 ~IASaSFDkSVkLW~g~tGk---~lasfRGHv~~VYqvawsaDs-----RLlVS~SkDsTLKvw~V~tkKl~~  445 (480)
T KOG0271|consen  381 YIASASFDKSVKLWDGRTGK---FLASFRGHVAAVYQVAWSADS-----RLLVSGSKDSTLKVWDVRTKKLKQ  445 (480)
T ss_pred             EEEEeecccceeeeeCCCcc---hhhhhhhccceeEEEEeccCc-----cEEEEcCCCceEEEEEeeeeeecc
Confidence            99999999999999999988   899999999999999999988     599999999999999999987543

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.1e-45  Score=305.96  Aligned_cols=273  Identities=23%  Similarity=0.348  Sum_probs=248.4

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC----eEEEEecCCeEEEEe
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG----KIFTAHQDCKIRVWQ  168 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~l~s~~~dg~i~iwd  168 (437)
                      |-+.+|..+.|+  ++.||||+-+ .++||+...  ...+.++   .+|...|.++.|+|.    .+++|+.||++++|+
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~--~~~~~~l---~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~  247 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ--CNLLQTL---RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWK  247 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCC--cceeEEE---eccccceeeEEEccCCCccceeeeccCCceeeec
Confidence            778999999999  9999999999 999999998  4556666   789999999999976    299999999999999


Q ss_pred             CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEE
Q 013717          169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLE  246 (437)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~  246 (437)
                      +++...+..+.                              +|...|..++|+|  ++|++++.|.+-++||++++..+.
T Consensus       248 ~~~e~~l~~l~------------------------------gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL  297 (459)
T KOG0272|consen  248 LSQETPLQDLE------------------------------GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL  297 (459)
T ss_pred             cCCCcchhhhh------------------------------cchhhheeeeecCCCceeeecccccchhhcccccchhhH
Confidence            99875554443                              7999999999999  999999999999999999999988


Q ss_pred             EeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717          247 SIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD  325 (437)
Q Consensus       247 ~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (437)
                      ...+|...|.+++|.+||. +++|+.|..-+|||++++.    .+..+.+|..+|.+|+|+|+|..|++|+.|++++|||
T Consensus       298 ~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr----~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWD  373 (459)
T KOG0272|consen  298 LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR----CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWD  373 (459)
T ss_pred             hhcccccccceeEecCCCceeeccCccchhheeecccCc----EEEEecccccceeeEeECCCceEEeecCCCCcEEEee
Confidence            8899999999999999999 8999999999999998765    7788899999999999999999999999999999999


Q ss_pred             CCCCccceEEeeeecccccceEEEEeeC---CEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCc
Q 013717          326 REDSANHMVVTGALRGHGKAILCLINVA---GLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNG  402 (437)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~  402 (437)
                      ++..+.    ...+.+|...|..+.+.+   .+|++++.|++++||..++..   +++.+.||.+.|.+++.++++.   
T Consensus       374 LR~r~~----ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~---~~ksLaGHe~kV~s~Dis~d~~---  443 (459)
T KOG0272|consen  374 LRMRSE----LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS---PLKSLAGHEGKVISLDISPDSQ---  443 (459)
T ss_pred             eccccc----ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc---cchhhcCCccceEEEEeccCCc---
Confidence            987653    556788999998888875   399999999999999988755   9999999999999999999984   


Q ss_pred             eEEEEEecCCCcEEEEe
Q 013717          403 VVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       403 ~~~l~s~~~dg~i~iw~  419 (437)
                        +++|++.|.++++|.
T Consensus       444 --~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  444 --AIATSSFDRTIKLWR  458 (459)
T ss_pred             --eEEEeccCceeeecc
Confidence              899999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.8e-42  Score=273.01  Aligned_cols=285  Identities=19%  Similarity=0.276  Sum_probs=246.4

Q ss_pred             eeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEE
Q 013717           92 SVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIR  165 (437)
Q Consensus        92 ~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~  165 (437)
                      .++| ||...|.++.|+  .++|++++.| .+.|||.-+.......++     ....|..++|+|..  +++|+.|+...
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-----~s~WVMtCA~sPSg~~VAcGGLdN~Cs  122 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-----PSSWVMTCAYSPSGNFVACGGLDNKCS  122 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec-----CceeEEEEEECCCCCeEEecCcCceeE
Confidence            3667 999999999999  8999999999 999999988544444443     67899999999876  88999999999


Q ss_pred             EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcce
Q 013717          166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRC  244 (437)
Q Consensus       166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~  244 (437)
                      ||++.+.+.....                        ...+.+.+|.+.+.|+.|-+ ..|++++.|.+..+||+++++.
T Consensus       123 iy~ls~~d~~g~~------------------------~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~  178 (343)
T KOG0286|consen  123 IYPLSTRDAEGNV------------------------RVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQ  178 (343)
T ss_pred             EEecccccccccc------------------------eeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceE
Confidence            9999865321111                        12244568999999999988 9999999999999999999999


Q ss_pred             EEEeecccccEEEEEEec-CCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEE
Q 013717          245 LESIKAHEDAVNAVAVSA-GGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSIL  322 (437)
Q Consensus       245 ~~~~~~~~~~v~~~~~~~-~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  322 (437)
                      +..+.+|.+.|.++.++| +++ +++|+.|+..++||++..    ...+.|.+|++.|+++.|.|+|.-|++|+.|++.+
T Consensus       179 ~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~----~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcR  254 (343)
T KOG0286|consen  179 TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG----QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCR  254 (343)
T ss_pred             EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc----ceeEeecccccccceEEEccCCCeeeecCCCceeE
Confidence            999999999999999999 777 999999999999999865    47899999999999999999999999999999999


Q ss_pred             EEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCC
Q 013717          323 VWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ  400 (437)
Q Consensus       323 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  400 (437)
                      +||++.......+..  ......|++++|+  |.+|++|..|.++.+||.-.++   .+..+.+|.+.|.++..+|++- 
T Consensus       255 lyDlRaD~~~a~ys~--~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e---~vg~L~GHeNRvScl~~s~DG~-  328 (343)
T KOG0286|consen  255 LYDLRADQELAVYSH--DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE---RVGVLAGHENRVSCLGVSPDGM-  328 (343)
T ss_pred             EEeecCCcEEeeecc--CcccCCceeEEEcccccEEEeeecCCceeEeeccccc---eEEEeeccCCeeEEEEECCCCc-
Confidence            999998765554432  3344566777765  7799999999999999998776   7889999999999999999994 


Q ss_pred             CceEEEEEecCCCcEEEEe
Q 013717          401 NGVVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       401 ~~~~~l~s~~~dg~i~iw~  419 (437)
                          .++||+.|.++|||.
T Consensus       329 ----av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  329 ----AVATGSWDSTLRIWA  343 (343)
T ss_pred             ----EEEecchhHheeecC
Confidence                799999999999994

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=4e-41  Score=261.81  Aligned_cols=286  Identities=18%  Similarity=0.333  Sum_probs=246.6

Q ss_pred             ccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccE
Q 013717           69 PSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSV  145 (437)
Q Consensus        69 ~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v  145 (437)
                      -.+++.++|.+|++|.... +.|..++ .....|+.|...  +++||+|+...||+||++++....+.++   ++|...|
T Consensus        11 viLvsA~YDhTIRfWqa~t-G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~---e~h~kNV   86 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALT-GICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATF---EGHTKNV   86 (311)
T ss_pred             eEEEeccCcceeeeeehhc-CeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEE---eccCCce
Confidence            4688999999999999876 7888888 556789999998  7888888877999999999877677777   7899999


Q ss_pred             EEEEEeCC-e-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-
Q 013717          146 KSVTFCDG-K-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-  222 (437)
Q Consensus       146 ~~l~~~~~-~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  222 (437)
                      +++.|.-+ + +++|+.||+++|||++.....+.+.                               |..+|+++..+| 
T Consensus        87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-------------------------------~~spVn~vvlhpn  135 (311)
T KOG0315|consen   87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-------------------------------HNSPVNTVVLHPN  135 (311)
T ss_pred             EEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-------------------------------CCCCcceEEecCC
Confidence            99999844 4 9999999999999999865444443                               889999999999 


Q ss_pred             -CeEEEEECCCcEEEEECCCcceEEEee-cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCc--ccceeeEEeeCcc
Q 013717          223 -GLIYSVSWDKSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNE--KRHALIATLEKHK  297 (437)
Q Consensus       223 -~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~  297 (437)
                       ..|++|..+|.|++||+.+..+...+. .....|.++.+.|||. ++.+...|...+|++....  ...+++.+++.|.
T Consensus       136 QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~  215 (311)
T KOG0315|consen  136 QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN  215 (311)
T ss_pred             cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheeccc
Confidence             899999999999999999887766654 4557899999999999 8888889999999986533  2345677889999


Q ss_pred             ccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCC
Q 013717          298 SAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGR  375 (437)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~  375 (437)
                      +.+....+|||+++|++++.|.+++||+.++.   +.....+.+|...+...+|+.+  ||++|+.|+.+++|++..++ 
T Consensus       216 ~~il~C~lSPd~k~lat~ssdktv~iwn~~~~---~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k-  291 (311)
T KOG0315|consen  216 GHILRCLLSPDVKYLATCSSDKTVKIWNTDDF---FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK-  291 (311)
T ss_pred             ceEEEEEECCCCcEEEeecCCceEEEEecCCc---eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc-
Confidence            99999999999999999999999999999865   4466678899999988888755  99999999999999999987 


Q ss_pred             eeeeeeecCCCCCeeEEEEE
Q 013717          376 FGCLAVLEGHTKPVKSLTAV  395 (437)
Q Consensus       376 ~~~~~~~~~h~~~v~~l~~~  395 (437)
                        .++...+|..+..|++..
T Consensus       292 --~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  292 --EVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             --eeeecCCcccccEEEEee
Confidence              788999999888887754

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.3e-42  Score=287.93  Aligned_cols=267  Identities=22%  Similarity=0.334  Sum_probs=240.0

Q ss_pred             ccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee----CCEEEEEecC-eEEEEeCCCCceeee
Q 013717           59 NLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH----HNFLYAASSH-EINVYDRTGTTWTSI  132 (437)
Q Consensus        59 ~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~----~~~l~s~~~d-~v~vwd~~~~~~~~~  132 (437)
                      .....|++....+++.|-+|.+.+|+.... ..+++| ||...|.++.|+    +..||||+.| ++++|++.+.  ..+
T Consensus       178 is~~~fS~ds~~laT~swsG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e--~~l  254 (459)
T KOG0272|consen  178 ISGCSFSRDSKHLATGSWSGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE--TPL  254 (459)
T ss_pred             ceeeEeecCCCeEEEeecCCceeEeecCCc-ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC--cch
Confidence            345688899999999999999999999886 777777 999999999999    3489999999 9999999883  445


Q ss_pred             eccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeec
Q 013717          133 NTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIE  210 (437)
Q Consensus       133 ~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (437)
                      ..+   .+|...|..++|+|++  |+|++.|.+-++||+.++......                              .|
T Consensus       255 ~~l---~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q------------------------------EG  301 (459)
T KOG0272|consen  255 QDL---EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ------------------------------EG  301 (459)
T ss_pred             hhh---hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh------------------------------cc
Confidence            555   7899999999999876  999999999999999998755443                              37


Q ss_pred             CCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc
Q 013717          211 HGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH  287 (437)
Q Consensus       211 ~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~  287 (437)
                      |...|.+++|++  .++++|+.|..-+|||+++++++..+.+|..+|.+++|+|+|. +|+|+.|++++|||++...   
T Consensus       302 Hs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~---  378 (459)
T KOG0272|consen  302 HSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS---  378 (459)
T ss_pred             cccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccc---
Confidence            999999999998  8999999999999999999999999999999999999999999 9999999999999998654   


Q ss_pred             eeeEEeeCccccEEEEEEcc-CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCc
Q 013717          288 ALIATLEKHKSAVNALALSD-DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRT  364 (437)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~  364 (437)
                       .+..+.+|.+-|+.|.|+| .|.+|++++.|++++||..++..    +.+.+.||.+.|.+++.+++  ++++++.|.+
T Consensus       379 -~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~----~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT  453 (459)
T KOG0272|consen  379 -ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS----PLKSLAGHEGKVISLDISPDSQAIATSSFDRT  453 (459)
T ss_pred             -cceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc----cchhhcCCccceEEEEeccCCceEEEeccCce
Confidence             4778889999999999999 78899999999999999997765    66678899999999887655  8999999999


Q ss_pred             EEEee
Q 013717          365 VRIWQ  369 (437)
Q Consensus       365 i~iwd  369 (437)
                      +++|.
T Consensus       454 ~KLW~  458 (459)
T KOG0272|consen  454 IKLWR  458 (459)
T ss_pred             eeecc
Confidence            99995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.8e-40  Score=258.83  Aligned_cols=285  Identities=23%  Similarity=0.349  Sum_probs=232.5

Q ss_pred             eeeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCC
Q 013717           90 INSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDC  162 (437)
Q Consensus        90 ~~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg  162 (437)
                      .+..++ +|++.|+.++..   .+.+++++.| .+.+|++.....+.-...+.+.+|+..|..+..+++.  .++++.|+
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~   85 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG   85 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence            344566 999999999998   7899999999 9999999876554433334447899999999999665  89999999


Q ss_pred             eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECC
Q 013717          163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRAS  240 (437)
Q Consensus       163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~  240 (437)
                      ++++||+.+++..+                              .|.+|...|.+++|++  ..+++|+.|.+|++||+.
T Consensus        86 ~lrlWDl~~g~~t~------------------------------~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~  135 (315)
T KOG0279|consen   86 TLRLWDLATGESTR------------------------------RFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL  135 (315)
T ss_pred             eEEEEEecCCcEEE------------------------------EEEecCCceEEEEecCCCceeecCCCcceeeeeeec
Confidence            99999999886433                              3458999999999998  899999999999999986


Q ss_pred             CcceEEEeecc--cccEEEEEEecCC--e-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE
Q 013717          241 DLRCLESIKAH--EDAVNAVAVSAGG--T-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG  315 (437)
Q Consensus       241 ~~~~~~~~~~~--~~~v~~~~~~~~~--~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  315 (437)
                      .. +..++..+  .+.|+|+.|+|+.  . |++++.|++|++||+++-    +....+.+|.+.++.++++|||.+.++|
T Consensus       136 g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~----~l~~~~~gh~~~v~t~~vSpDGslcasG  210 (315)
T KOG0279|consen  136 GV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC----QLRTTFIGHSGYVNTVTVSPDGSLCASG  210 (315)
T ss_pred             cc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc----chhhccccccccEEEEEECCCCCEEecC
Confidence            54 44555433  7899999999985  3 999999999999988653    4667788999999999999999999999


Q ss_pred             eCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecC---------C
Q 013717          316 ACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEG---------H  385 (437)
Q Consensus       316 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------h  385 (437)
                      +.||.+.+||++.++....     ..|...|.+++|.|+ +.++...+..|+|||+.+..   ++..+..         .
T Consensus       211 gkdg~~~LwdL~~~k~lys-----l~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~---~v~~l~~d~~g~s~~~~  282 (315)
T KOG0279|consen  211 GKDGEAMLWDLNEGKNLYS-----LEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKA---VVEELKLDGIGPSSKAG  282 (315)
T ss_pred             CCCceEEEEEccCCceeEe-----ccCCCeEeeEEecCCceeEeeccCCceEEEeccchh---hhhhccccccccccccC
Confidence            9999999999998875332     357889999999998 55555556669999999876   3333321         1


Q ss_pred             CCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717          386 TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       386 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                      .-.-.+++|++++.     .|++|-.|+.|++|.+..
T Consensus       283 ~~~clslaws~dG~-----tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  283 DPICLSLAWSADGQ-----TLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             CcEEEEEEEcCCCc-----EEEeeecCCcEEEEEeec
Confidence            22356788999884     799999999999999853

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.2e-40  Score=294.32  Aligned_cols=352  Identities=22%  Similarity=0.378  Sum_probs=275.8

Q ss_pred             ccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee----CCEEEEEecC-eEEEEeCCCCceeee
Q 013717           59 NLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH----HNFLYAASSH-EINVYDRTGTTWTSI  132 (437)
Q Consensus        59 ~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~----~~~l~s~~~d-~v~vwd~~~~~~~~~  132 (437)
                      ...+.|.|..-.+++++.||.+.+||... ..+.+.| ||.+.|.++.|+    ...|++|..| .|++||+.+... ++
T Consensus       108 vi~ma~~~~g~LlAtggaD~~v~VWdi~~-~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t-cl  185 (775)
T KOG0319|consen  108 VITMAFDPTGTLLATGGADGRVKVWDIKN-GYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT-CL  185 (775)
T ss_pred             eEEEEEcCCCceEEeccccceEEEEEeeC-CEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch-HH
Confidence            34678999999999999999999999987 5677777 999999999999    4568899999 999999997422 34


Q ss_pred             eccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccc-------------------------
Q 013717          133 NTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVN-------------------------  185 (437)
Q Consensus       133 ~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------------------  185 (437)
                      ..+   ..|...|++++|.++.  +++++.|..+.+||+.+.+............                         
T Consensus       186 ~~~---~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~  262 (775)
T KOG0319|consen  186 HTM---ILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVV  262 (775)
T ss_pred             HHH---HhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceE
Confidence            444   6799999999999665  9999999999999986543222211000000                         


Q ss_pred             -------------------------------cceeeecCCCCeeEE---------------------------------e
Q 013717          186 -------------------------------DRLLRFMLPNSYVTV---------------------------------R  201 (437)
Q Consensus       186 -------------------------------~~~~~~~~~~~~~~~---------------------------------~  201 (437)
                                                     .........+..+.+                                 .
T Consensus       263 ~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVA  342 (775)
T KOG0319|consen  263 QYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVA  342 (775)
T ss_pred             EEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEE
Confidence                                           000000000110000                                 0


Q ss_pred             ------------eccceeeecCCCcEEEEE-eCC-CeEEEEECCCcEEEEECCCcc----eEEEeecccccEEEEEEecC
Q 013717          202 ------------RHKKKLWIEHGDAVTGLA-VNN-GLIYSVSWDKSLKIWRASDLR----CLESIKAHEDAVNAVAVSAG  263 (437)
Q Consensus       202 ------------~~~~~~~~~~~~~v~~~~-~~~-~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~  263 (437)
                                  .....++.+|...|.++. +.. .+|++|+.|.++++|.++++.    ++....+|...|.+++++..
T Consensus       343 TNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~  422 (775)
T KOG0319|consen  343 TNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKL  422 (775)
T ss_pred             eCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeeccc
Confidence                        001145578999999998 444 599999999999999884432    34455689999999999877


Q ss_pred             Ce--EEEEeCCCeEEEecCCCCccccee-eE----EeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEe
Q 013717          264 GT--VYTGSADRKIRVWAKPFNEKRHAL-IA----TLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVT  336 (437)
Q Consensus       264 ~~--l~~~~~dg~v~iwd~~~~~~~~~~-~~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  336 (437)
                      +.  |++++.|+++++|++........+ ..    ....|...|++++++|+.+++++|+.|.+.+||+++...    +.
T Consensus       423 ~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~----l~  498 (775)
T KOG0319|consen  423 GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR----LL  498 (775)
T ss_pred             CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce----EE
Confidence            76  999999999999999763322221 11    335699999999999999999999999999999997443    77


Q ss_pred             eeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCc
Q 013717          337 GALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGE  414 (437)
Q Consensus       337 ~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  414 (437)
                      +.+.||...+.++.|.+.  .+++++.|++|+||.+.+..   |++++.||...|..+.|..++.     .|++++.||-
T Consensus       499 ~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS---ClkT~eGH~~aVlra~F~~~~~-----qliS~~adGl  570 (775)
T KOG0319|consen  499 GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS---CLKTFEGHTSAVLRASFIRNGK-----QLISAGADGL  570 (775)
T ss_pred             EEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce---eeeeecCccceeEeeeeeeCCc-----EEEeccCCCc
Confidence            889999999999999977  99999999999999999866   9999999999999999999885     5999999999


Q ss_pred             EEEEeeccCCCCC
Q 013717          415 IRAWQVSVSCPNS  427 (437)
Q Consensus       415 i~iw~~~~~~~~~  427 (437)
                      |++|++++++-..
T Consensus       571 iKlWnikt~eC~~  583 (775)
T KOG0319|consen  571 IKLWNIKTNECEM  583 (775)
T ss_pred             EEEEeccchhhhh
Confidence            9999999886543

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.4e-39  Score=251.94  Aligned_cols=276  Identities=22%  Similarity=0.354  Sum_probs=230.2

Q ss_pred             CEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCcccc
Q 013717          109 NFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVND  186 (437)
Q Consensus       109 ~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  186 (437)
                      -+|++++.| +||+|...+|  .+.+++   ....+.|+.+...|++ .++++..-.||+||++++....          
T Consensus        11 viLvsA~YDhTIRfWqa~tG--~C~rTi---qh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~P----------   75 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTG--ICSRTI---QHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNP----------   75 (311)
T ss_pred             eEEEeccCcceeeeeehhcC--eEEEEE---ecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCc----------
Confidence            479999999 9999999995  566666   2345789999999887 4444456789999999876422          


Q ss_pred             ceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCC
Q 013717          187 RLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG  264 (437)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  264 (437)
                                        ...+.+|...|+++.|..  +.+++|++||+++|||++...+.+.++ +..+|+++..+|+.
T Consensus        76 ------------------v~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ  136 (311)
T KOG0315|consen   76 ------------------VATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ  136 (311)
T ss_pred             ------------------eeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc
Confidence                              234467999999999976  999999999999999999977766665 77999999999988


Q ss_pred             e-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCc--cceEEeeeecc
Q 013717          265 T-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSA--NHMVVTGALRG  341 (437)
Q Consensus       265 ~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~  341 (437)
                      . |++|..+|.|++||+..+....+++   ......|.++...|||.+++++...|..++|++-...  ........++.
T Consensus       137 teLis~dqsg~irvWDl~~~~c~~~li---Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a  213 (311)
T KOG0315|consen  137 TELISGDQSGNIRVWDLGENSCTHELI---PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA  213 (311)
T ss_pred             ceEEeecCCCcEEEEEccCCccccccC---CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec
Confidence            7 9999999999999998765333332   2345789999999999999999999999999986532  33445566888


Q ss_pred             cccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717          342 HGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       342 ~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~  419 (437)
                      |.+.++.+.++++  +|++++.|.+++||+.++.  ++.-..+.+|...+.+.+|+.++     +||+||+.|+.+|+|+
T Consensus       214 h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg-----~YlvTassd~~~rlW~  286 (311)
T KOG0315|consen  214 HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADG-----EYLVTASSDHTARLWD  286 (311)
T ss_pred             ccceEEEEEECCCCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCc-----cEEEecCCCCceeecc
Confidence            9999988877766  9999999999999999975  45778889999999999999998     4999999999999999


Q ss_pred             eccCCCCCC
Q 013717          420 VSVSCPNSS  428 (437)
Q Consensus       420 ~~~~~~~~~  428 (437)
                      +..++...+
T Consensus       287 ~~~~k~v~q  295 (311)
T KOG0315|consen  287 LSAGKEVRQ  295 (311)
T ss_pred             cccCceeee
Confidence            999985443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=4.6e-38  Score=269.28  Aligned_cols=349  Identities=24%  Similarity=0.356  Sum_probs=275.1

Q ss_pred             ccccceeeccccc-cccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceee
Q 013717           57 QSNLSLQTLPSVP-SLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTS  131 (437)
Q Consensus        57 ~~~~~~~~~~~~~-~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~  131 (437)
                      +...+..|-|+.| .+++++.|+++.+++-.+ .+...++ .|..-|.|+.|+  |.++|+++.| .|.+||-.++  +.
T Consensus       148 r~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP-FKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg--e~  224 (603)
T KOG0318|consen  148 RRINSVDFKPSRPFRIATGSDDNTVAFFEGPP-FKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG--EK  224 (603)
T ss_pred             eeEeeeeccCCCceEEEeccCCCeEEEeeCCC-eeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc--cE
Confidence            3445677878777 588999999999997544 5666677 999999999999  9999999999 9999999995  55


Q ss_pred             eeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecC-CCCeeEEe-------
Q 013717          132 INTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFML-PNSYVTVR-------  201 (437)
Q Consensus       132 ~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------  201 (437)
                      +..+....+|.+.|.+|.|+||.  +++++.|.+++|||+.+.+....+..-....+....... .+..+.+.       
T Consensus       225 vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~  304 (603)
T KOG0318|consen  225 VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINY  304 (603)
T ss_pred             EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEE
Confidence            66665567899999999999876  999999999999999998766655443333333332222 22222221       


Q ss_pred             -----eccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceE-----------EE----------------
Q 013717          202 -----RHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCL-----------ES----------------  247 (437)
Q Consensus       202 -----~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~-----------~~----------------  247 (437)
                           ....+++.+|...|+++..++  .+|++|+.||.|.-||..++..-           ..                
T Consensus       305 ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd  384 (603)
T KOG0318|consen  305 LNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDD  384 (603)
T ss_pred             ecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCC
Confidence                 113356789999999999998  89999999999999998642110           00                


Q ss_pred             ----------------------------------------------eec--------ccccEEEEEEecCCe-EEEEeCC
Q 013717          248 ----------------------------------------------IKA--------HEDAVNAVAVSAGGT-VYTGSAD  272 (437)
Q Consensus       248 ----------------------------------------------~~~--------~~~~v~~~~~~~~~~-l~~~~~d  272 (437)
                                                                    ++.        ..-...+++++|++. +++|+.|
T Consensus       385 ~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~D  464 (603)
T KOG0318|consen  385 TLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQD  464 (603)
T ss_pred             eEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEeccc
Confidence                                                          000        011345788899998 9999999


Q ss_pred             CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee
Q 013717          273 RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV  352 (437)
Q Consensus       273 g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~  352 (437)
                      |.|++|.+.....  ........|.++|++++|+||+.+|+++...+.+.+||+.+.+.   ....+.-|...|.|++|+
T Consensus       465 gkvhvysl~g~~l--~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~---~~~~w~FHtakI~~~aWs  539 (603)
T KOG0318|consen  465 GKVHVYSLSGDEL--KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV---KTNRWAFHTAKINCVAWS  539 (603)
T ss_pred             ceEEEEEecCCcc--cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce---ecceeeeeeeeEEEEEeC
Confidence            9999999875442  23334567999999999999999999999999999999987654   333455699999999999


Q ss_pred             CC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          353 AG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       353 ~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      ++  ++|+|+.|..|.||+++...  +.+....+|...|+.+.|..+.      .|++.|.|..|++|++.
T Consensus       540 P~n~~vATGSlDt~Viiysv~kP~--~~i~iknAH~~gVn~v~wlde~------tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  540 PNNKLVATGSLDTNVIIYSVKKPA--KHIIIKNAHLGGVNSVAWLDES------TVVSSGQDANIKVWNVT  602 (603)
T ss_pred             CCceEEEeccccceEEEEEccChh--hheEeccccccCceeEEEecCc------eEEeccCcceeEEeccc
Confidence            88  99999999999999999866  3477778899999999999876      69999999999999875

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3.5e-39  Score=263.60  Aligned_cols=294  Identities=19%  Similarity=0.323  Sum_probs=252.8

Q ss_pred             Ccceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEec
Q 013717           87 HLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQ  160 (437)
Q Consensus        87 ~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~  160 (437)
                      ..+++.+.+ ||.+.|.|+++.  ++++++|+.| +|+|||+.++.++.  ++   .+|...|..+++++-.  +++++.
T Consensus       139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl--tl---tGhi~~vr~vavS~rHpYlFs~ge  213 (460)
T KOG0285|consen  139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL--TL---TGHIETVRGVAVSKRHPYLFSAGE  213 (460)
T ss_pred             CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE--ee---cchhheeeeeeecccCceEEEecC
Confidence            356777778 999999999999  8999999999 99999999975444  44   4799999999999765  999999


Q ss_pred             CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEE
Q 013717          161 DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWR  238 (437)
Q Consensus       161 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd  238 (437)
                      |+.|+.||++..+.++.+.                              +|-..|.|++.+|  +.|++|+.|.++++||
T Consensus       214 dk~VKCwDLe~nkvIR~Yh------------------------------GHlS~V~~L~lhPTldvl~t~grDst~RvWD  263 (460)
T KOG0285|consen  214 DKQVKCWDLEYNKVIRHYH------------------------------GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWD  263 (460)
T ss_pred             CCeeEEEechhhhhHHHhc------------------------------cccceeEEEeccccceeEEecCCcceEEEee
Confidence            9999999999887666554                              7999999999999  9999999999999999


Q ss_pred             CCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC
Q 013717          239 ASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC  317 (437)
Q Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  317 (437)
                      +++...+..+.+|..+|..+.+.|-+- +++|+.|++|++||++.+.    ....+..|...+.+++.+|....+++++.
T Consensus       264 iRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk----t~~tlt~hkksvral~lhP~e~~fASas~  339 (460)
T KOG0285|consen  264 IRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK----TMITLTHHKKSVRALCLHPKENLFASASP  339 (460)
T ss_pred             ecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc----eeEeeecccceeeEEecCCchhhhhccCC
Confidence            999999999999999999999988554 9999999999999998664    56677789999999999999999999988


Q ss_pred             CCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecC-----CCCCeeE
Q 013717          318 DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEG-----HTKPVKS  391 (437)
Q Consensus       318 dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----h~~~v~~  391 (437)
                      |. |+-|++..+.    +...+.+|..-+.+++.+.+ ++++|++.|.+.+||.+++..++...+...     ....|.+
T Consensus       340 dn-ik~w~~p~g~----f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~a  414 (460)
T KOG0285|consen  340 DN-IKQWKLPEGE----FLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFA  414 (460)
T ss_pred             cc-ceeccCCccc----hhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeE
Confidence            75 9999997765    66668899999999998766 999999999999999999886665544432     2457888


Q ss_pred             EEEEccCCCCceEEEEEecCCCcEEEEeeccCC-CCCCC
Q 013717          392 LTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC-PNSSP  429 (437)
Q Consensus       392 l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~-~~~~~  429 (437)
                      .+|...+.     .|++|..|.+|++|+-+... +...|
T Consensus       415 s~fDktg~-----rlit~eadKtIk~~keDe~aT~EthP  448 (460)
T KOG0285|consen  415 SCFDKTGS-----RLITGEADKTIKMYKEDEHATEETHP  448 (460)
T ss_pred             EeecccCc-----eEEeccCCcceEEEecccccCcccCC
Confidence            88888775     69999999999999876543 34444

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.1e-38  Score=248.74  Aligned_cols=288  Identities=22%  Similarity=0.372  Sum_probs=240.2

Q ss_pred             eeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCC-CceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCC
Q 013717           91 NSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTG-TTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDC  162 (437)
Q Consensus        91 ~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg  162 (437)
                      ..+.+ +|.+.|..++|+   |..||+++.| .|++|+... ..+.+...+.  .+|+..|++++|+|.+  |++++.|.
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld--~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD--DGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc--ccchheeeeeeecCCCcEEEEeeccc
Confidence            44556 999999999999   4489999999 999999984 3455555443  5799999999999765  99999999


Q ss_pred             eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECC
Q 013717          163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRAS  240 (437)
Q Consensus       163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~  240 (437)
                      ++.||.-..++...                            ...+.+|+.+|.|++|++  ++||+++.|+.|-||.+.
T Consensus        84 t~~Iw~k~~~efec----------------------------v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d  135 (312)
T KOG0645|consen   84 TVVIWKKEDGEFEC----------------------------VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID  135 (312)
T ss_pred             eEEEeecCCCceeE----------------------------EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence            99999877554221                            233468999999999998  999999999999999987


Q ss_pred             C---cceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe
Q 013717          241 D---LRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA  316 (437)
Q Consensus       241 ~---~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (437)
                      .   .++...++.|...|..+.|+|... |++++.|++|++|+-.. ...+.+..++.+|...|.+++|++.|..|++++
T Consensus       136 eddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s  214 (312)
T KOG0645|consen  136 EDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS  214 (312)
T ss_pred             CCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEec
Confidence            4   367788889999999999999877 99999999999998653 567889999999999999999999999999999


Q ss_pred             CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCC---CCeeeee-eecCCCCCeeEE
Q 013717          317 CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSD---GRFGCLA-VLEGHTKPVKSL  392 (437)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~-~~~~h~~~v~~l  392 (437)
                      .|++++||-....     +   ...|...+..+.+....|++++.|+.|++|.....   ..+..+. .-..|...|+++
T Consensus       215 dD~tv~Iw~~~~~-----~---~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV  286 (312)
T KOG0645|consen  215 DDGTVSIWRLYTD-----L---SGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSV  286 (312)
T ss_pred             CCcceEeeeeccC-----c---chhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceE
Confidence            9999999986522     1   23377888889999779999999999999987643   1223333 445799999999


Q ss_pred             EEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          393 TAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       393 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      .|.|....    +|++|++||.|++|.+.
T Consensus       287 ~w~p~~~~----~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  287 QWNPKVSN----RLASGGDDGIVNFWELE  311 (312)
T ss_pred             EEcCCCCC----ceeecCCCceEEEEEec
Confidence            99995443    79999999999999985

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.3e-38  Score=269.06  Aligned_cols=298  Identities=22%  Similarity=0.273  Sum_probs=249.3

Q ss_pred             eeecCccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeeee--ccc-------cCCCCcccEEEEEEeCCe--EE
Q 013717           92 SVQLGHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSIN--TFN-------DNDSSSGSVKSVTFCDGK--IF  156 (437)
Q Consensus        92 ~~~~~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~--~~~-------~~~~h~~~v~~l~~~~~~--l~  156 (437)
                      ...+.|..+|.+.+|+   ...|++|+.+ ..++|++.........  .++       ........|++++|+.++  |+
T Consensus       172 ~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La  251 (524)
T KOG0273|consen  172 AKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA  251 (524)
T ss_pred             eeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence            3444899999999999   4489999999 9999999752111111  111       001234689999999554  99


Q ss_pred             EEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcE
Q 013717          157 TAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSL  234 (437)
Q Consensus       157 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i  234 (437)
                      +|+.||.+++|+....... .+                              ..|.++|.++.|+.  .+|++++.||++
T Consensus       252 tG~~~G~~riw~~~G~l~~-tl------------------------------~~HkgPI~slKWnk~G~yilS~~vD~tt  300 (524)
T KOG0273|consen  252 TGSEDGEARIWNKDGNLIS-TL------------------------------GQHKGPIFSLKWNKKGTYILSGGVDGTT  300 (524)
T ss_pred             EeecCcEEEEEecCchhhh-hh------------------------------hccCCceEEEEEcCCCCEEEeccCCccE
Confidence            9999999999998755322 22                              24999999999998  899999999999


Q ss_pred             EEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEE
Q 013717          235 KIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFS  314 (437)
Q Consensus       235 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  314 (437)
                      .+||..++...+.+..|..+-..+.|-.+..+++.+.||.|+++.+..+    .++.++.+|.+.|.++.|+|.|.+|++
T Consensus       301 ilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~----~P~~t~~GH~g~V~alk~n~tg~LLaS  376 (524)
T KOG0273|consen  301 ILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGED----RPVKTFIGHHGEVNALKWNPTGSLLAS  376 (524)
T ss_pred             EEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCC----CcceeeecccCceEEEEECCCCceEEE
Confidence            9999999999999998888878899988888999999999999987654    377888899999999999999999999


Q ss_pred             EeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-----------EEEEEeCCCcEEEeeCCCCCCeeeeeeec
Q 013717          315 GACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-----------LLMSGSADRTVRIWQRGSDGRFGCLAVLE  383 (437)
Q Consensus       315 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  383 (437)
                      ++.|++++||......    ....+.+|...|..+.|+|.           .+++++.|++|++||+..+.   ++..+.
T Consensus       377 ~SdD~TlkiWs~~~~~----~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv---~i~~f~  449 (524)
T KOG0273|consen  377 CSDDGTLKIWSMGQSN----SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV---PIHTLM  449 (524)
T ss_pred             ecCCCeeEeeecCCCc----chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc---eeEeec
Confidence            9999999999986654    55667889999988888743           89999999999999999987   899999


Q ss_pred             CCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCCC-----CeeccccC
Q 013717          384 GHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSS-----PLNLQKWN  436 (437)
Q Consensus       384 ~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~-----~~~~~~w~  436 (437)
                      .|..+|.+++|+|++     +|+++|+.||.|.+|++++++....     .+..++||
T Consensus       450 kH~~pVysvafS~~g-----~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn  502 (524)
T KOG0273|consen  450 KHQEPVYSVAFSPNG-----RYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWN  502 (524)
T ss_pred             cCCCceEEEEecCCC-----cEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEc
Confidence            999999999999998     4899999999999999999986443     33556666

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.6e-40  Score=270.52  Aligned_cols=278  Identities=24%  Similarity=0.422  Sum_probs=242.2

Q ss_pred             CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcc
Q 013717           96 GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKH  174 (437)
Q Consensus        96 ~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~  174 (437)
                      ...+.|+|+.+..+.+++|..| +|+|||.++  ..+...+   .+|++.|.|+.|...-+++|+.|.+|++||+++++.
T Consensus       195 e~skgVYClQYDD~kiVSGlrDnTikiWD~n~--~~c~~~L---~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~  269 (499)
T KOG0281|consen  195 ENSKGVYCLQYDDEKIVSGLRDNTIKIWDKNS--LECLKIL---TGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEP  269 (499)
T ss_pred             ccCCceEEEEecchhhhcccccCceEEecccc--HHHHHhh---hcCCCcEEeeeccceEEEecCCCceEEEEeccCCch
Confidence            3568899999999999999999 999999998  5556555   789999999999988899999999999999999986


Q ss_pred             cccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcc---eEEEeecc
Q 013717          175 HKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLR---CLESIKAH  251 (437)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~  251 (437)
                      +..+                              .+|...|..+.|+++++++++.|.++.+||+....   +...+.+|
T Consensus       270 l~tl------------------------------ihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGH  319 (499)
T KOG0281|consen  270 LNTL------------------------------IHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGH  319 (499)
T ss_pred             hhHH------------------------------hhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhh
Confidence            6554                              36999999999999999999999999999997654   23445689


Q ss_pred             cccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCcc
Q 013717          252 EDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSAN  331 (437)
Q Consensus       252 ~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (437)
                      ...|+.+.|+. ..+++++.|.+|++|++.+.    +.++++.+|...|.|+.+.  |+++++|+.|.+|++||+..+. 
T Consensus       320 rAaVNvVdfd~-kyIVsASgDRTikvW~~st~----efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~-  391 (499)
T KOG0281|consen  320 RAAVNVVDFDD-KYIVSASGDRTIKVWSTSTC----EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGA-  391 (499)
T ss_pred             hhheeeecccc-ceEEEecCCceEEEEeccce----eeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccH-
Confidence            99999999962 25999999999999976544    5899999999999999885  8899999999999999999887 


Q ss_pred             ceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCe------eeeeeecCCCCCeeEEEEEccCCCCceEE
Q 013717          332 HMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRF------GCLAVLEGHTKPVKSLTAVTEEGQNGVVS  405 (437)
Q Consensus       332 ~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  405 (437)
                         +...+.||..-|.|+.|+...+++|+.||+|+|||+..+...      .|+..+..|.+.|..+.|..-       .
T Consensus       392 ---cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f-------q  461 (499)
T KOG0281|consen  392 ---CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF-------Q  461 (499)
T ss_pred             ---HHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce-------E
Confidence               445578999999999999999999999999999999876532      266778889999999999764       5


Q ss_pred             EEEecCCCcEEEEeeccCCCC
Q 013717          406 VFSGSLDGEIRAWQVSVSCPN  426 (437)
Q Consensus       406 l~s~~~dg~i~iw~~~~~~~~  426 (437)
                      +++++-|.+|.|||+..+.+.
T Consensus       462 IvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  462 IISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             EEeccCCCeEEEEEcCCCCcc
Confidence            999999999999999877653

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.4e-38  Score=250.49  Aligned_cols=274  Identities=21%  Similarity=0.316  Sum_probs=233.7

Q ss_pred             cccceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCcee-eee
Q 013717           58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWT-SIN  133 (437)
Q Consensus        58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~-~~~  133 (437)
                      ....+...+..+.+++.|.||.+.+||.-...+....---...|..+||+  |+++|.|+-| ...||++.+.+.+ ...
T Consensus        57 Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~  136 (343)
T KOG0286|consen   57 KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVR  136 (343)
T ss_pred             ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccce
Confidence            44577888999999999999999999986654444433667899999999  9999999999 9999999864111 112


Q ss_pred             ccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717          134 TFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG  212 (437)
Q Consensus       134 ~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (437)
                      .-..+.+|.+.+.|+.|.++. |+|++.|.+..+||+++++....+                              .+|.
T Consensus       137 v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f------------------------------~GH~  186 (343)
T KOG0286|consen  137 VSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVF------------------------------HGHT  186 (343)
T ss_pred             eeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEe------------------------------cCCc
Confidence            222237899999999999776 999999999999999999865544                              4799


Q ss_pred             CcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccce
Q 013717          213 DAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHA  288 (437)
Q Consensus       213 ~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~  288 (437)
                      +.|.++.+.|   +.+++|+-|+..++||++.+.+.++|.+|+..|+++.|.|+|. |++|+.|++.++||++.+.    
T Consensus       187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~----  262 (343)
T KOG0286|consen  187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ----  262 (343)
T ss_pred             ccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCc----
Confidence            9999999988   9999999999999999999999999999999999999999999 9999999999999998765    


Q ss_pred             eeEEee--CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCc
Q 013717          289 LIATLE--KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRT  364 (437)
Q Consensus       289 ~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~  364 (437)
                      .+..+.  .-..+|++++|+..|++|++|..|.++.+||.-.++    ....+.+|...|.|+...++  .+++|+.|..
T Consensus       263 ~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e----~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~  338 (343)
T KOG0286|consen  263 ELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE----RVGVLAGHENRVSCLGVSPDGMAVATGSWDST  338 (343)
T ss_pred             EEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccc----eEEEeeccCCeeEEEEECCCCcEEEecchhHh
Confidence            233333  344689999999999999999999999999996655    55667899999999887766  9999999999


Q ss_pred             EEEee
Q 013717          365 VRIWQ  369 (437)
Q Consensus       365 i~iwd  369 (437)
                      +|||.
T Consensus       339 lriW~  343 (343)
T KOG0286|consen  339 LRIWA  343 (343)
T ss_pred             eeecC
Confidence            99994

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=4.4e-38  Score=251.40  Aligned_cols=284  Identities=26%  Similarity=0.351  Sum_probs=237.5

Q ss_pred             eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCe
Q 013717           90 INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCK  163 (437)
Q Consensus        90 ~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~  163 (437)
                      .++..+ ||.+.|+.+.|+  |.+||+|+.| .|.+|+.... .+....+   .+|+++|..+.|..+.  +++++.|.+
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~l---kgHsgAVM~l~~~~d~s~i~S~gtDk~  113 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD-CENFWVL---KGHSGAVMELHGMRDGSHILSCGTDKT  113 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc-ccceeee---ccccceeEeeeeccCCCEEEEecCCce
Confidence            344455 999999999999  9999999999 9999997653 3333333   6899999999999655  999999999


Q ss_pred             EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECC
Q 013717          164 IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRAS  240 (437)
Q Consensus       164 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~  240 (437)
                      |+.||.++++.....+                              +|..-|+.+....   .++.+|+.||++++||++
T Consensus       114 v~~wD~~tG~~~rk~k------------------------------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R  163 (338)
T KOG0265|consen  114 VRGWDAETGKRIRKHK------------------------------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR  163 (338)
T ss_pred             EEEEecccceeeehhc------------------------------cccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence            9999999998666554                              6888888887543   788999999999999999


Q ss_pred             CcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC
Q 013717          241 DLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR  319 (437)
Q Consensus       241 ~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  319 (437)
                      +.+.++++. .+-+++++.|..++. +++|+-|+.|++||++.+.    ....+.+|..+|+.+..+|+|.++.+-+.|.
T Consensus       164 ~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d----~~~~lsGh~DtIt~lsls~~gs~llsnsMd~  238 (338)
T KOG0265|consen  164 KKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND----GLYTLSGHADTITGLSLSRYGSFLLSNSMDN  238 (338)
T ss_pred             ccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCc----ceEEeecccCceeeEEeccCCCccccccccc
Confidence            998888875 566799999998887 9999999999999997664    6788899999999999999999999999999


Q ss_pred             cEEEEECCCCccceEEeeeecccc----cceEEEEeeC--CEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEE
Q 013717          320 SILVWDREDSANHMVVTGALRGHG----KAILCLINVA--GLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLT  393 (437)
Q Consensus       320 ~i~i~d~~~~~~~~~~~~~~~~~~----~~i~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~  393 (437)
                      ++++||++...........+.+|.    ...+..+|++  ..+.+|+.|..+++||.....   .+..+.||.+.|++++
T Consensus       239 tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~---~lyklpGh~gsvn~~~  315 (338)
T KOG0265|consen  239 TVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR---ILYKLPGHYGSVNEVD  315 (338)
T ss_pred             eEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccccc---EEEEcCCcceeEEEee
Confidence            999999986443333333344432    2334555554  499999999999999998766   8999999999999999


Q ss_pred             EEccCCCCceEEEEEecCCCcEEEEee
Q 013717          394 AVTEEGQNGVVSVFSGSLDGEIRAWQV  420 (437)
Q Consensus       394 ~~~~~~~~~~~~l~s~~~dg~i~iw~~  420 (437)
                      |+|..+     +|.+++.|.+|++=++
T Consensus       316 Fhp~e~-----iils~~sdk~i~lgei  337 (338)
T KOG0265|consen  316 FHPTEP-----IILSCSSDKTIYLGEI  337 (338)
T ss_pred             ecCCCc-----EEEEeccCceeEeecc
Confidence            999986     8999999999987543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.7e-39  Score=263.39  Aligned_cols=267  Identities=23%  Similarity=0.372  Sum_probs=234.0

Q ss_pred             ccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCccc
Q 013717           67 SVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGS  144 (437)
Q Consensus        67 ~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~  144 (437)
                      ....++++..|.+|.+||.+. ..+...+ ||++.|.|+.|..+.+++|+.| +|+|||++++  +.+.++   -+|...
T Consensus       206 DD~kiVSGlrDnTikiWD~n~-~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tg--e~l~tl---ihHcea  279 (499)
T KOG0281|consen  206 DDEKIVSGLRDNTIKIWDKNS-LECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTG--EPLNTL---IHHCEA  279 (499)
T ss_pred             cchhhhcccccCceEEecccc-HHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCC--chhhHH---hhhcce
Confidence            556789999999999999876 5666677 9999999999999999999999 9999999995  455555   579999


Q ss_pred             EEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCe
Q 013717          145 VKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGL  224 (437)
Q Consensus       145 v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  224 (437)
                      |..+.|+++.+++++.|.+|.+||+..........                           ++.||...|+.+.|+.++
T Consensus       280 VLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rr---------------------------VLvGHrAaVNvVdfd~ky  332 (499)
T KOG0281|consen  280 VLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRR---------------------------VLVGHRAAVNVVDFDDKY  332 (499)
T ss_pred             eEEEEEeCCEEEEecCCceeEEEeccCchHHHHHH---------------------------HHhhhhhheeeeccccce
Confidence            99999999999999999999999998775443333                           335899999999999999


Q ss_pred             EEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEE
Q 013717          225 IYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNAL  303 (437)
Q Consensus       225 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~  303 (437)
                      +++++.|.+|++|++.+++++.++.+|...|-|+.+  .++ +++|+.|.+|++||+..+    .+++.+++|+.-|.++
T Consensus       333 IVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G----~cLRvLeGHEeLvRci  406 (499)
T KOG0281|consen  333 IVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG----ACLRVLEGHEELVRCI  406 (499)
T ss_pred             EEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc----HHHHHHhchHHhhhhe
Confidence            999999999999999999999999999999999987  466 899999999999988765    4888999999999999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCccceEE-----eeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717          304 ALSDDGTVLFSGACDRSILVWDREDSANHMVV-----TGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       304 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~  374 (437)
                      .|.  .+.+++|..||+|+|||+..+..+...     ...+..|.+.|..+.|+.-.+++++.|.+|.|||...+.
T Consensus       407 RFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~  480 (499)
T KOG0281|consen  407 RFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGP  480 (499)
T ss_pred             eec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCC
Confidence            996  669999999999999999876544322     223457899999999999999999999999999998755

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-37  Score=277.22  Aligned_cols=314  Identities=21%  Similarity=0.353  Sum_probs=263.7

Q ss_pred             ceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEeeC---CEEEEEecC-eEEEEeCCCCceeeeeccc
Q 013717           61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVHH---NFLYAASSH-EINVYDRTGTTWTSINTFN  136 (437)
Q Consensus        61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~~---~~l~s~~~d-~v~vwd~~~~~~~~~~~~~  136 (437)
                      .+...++...++.++.+.++.+++.+......+..|.++.|..+.|-|   ++||.++.. .+|+|+..+...+   .  
T Consensus       286 ~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---i--  360 (775)
T KOG0319|consen  286 HLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---I--  360 (775)
T ss_pred             cceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE---E--
Confidence            445566777888889999999998877554444449999999999985   999999999 9999999885444   1  


Q ss_pred             cCCCCcccEEEEE-EeCC-eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCc
Q 013717          137 DNDSSSGSVKSVT-FCDG-KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA  214 (437)
Q Consensus       137 ~~~~h~~~v~~l~-~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (437)
                       ..+|...|.++. |+.+ .|++|+.|.++++|.++.+.......                          ....+|...
T Consensus       361 -i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~--------------------------a~~~gH~~s  413 (775)
T KOG0319|consen  361 -IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCV--------------------------AQANGHTNS  413 (775)
T ss_pred             -EeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhh--------------------------hhhcccccc
Confidence             258999999999 4444 59999999999999995443221111                          111479999


Q ss_pred             EEEEEeCC---CeEEEEECCCcEEEEECCCcce-----E----EEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCC
Q 013717          215 VTGLAVNN---GLIYSVSWDKSLKIWRASDLRC-----L----ESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKP  281 (437)
Q Consensus       215 v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~-----~----~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~  281 (437)
                      |.+++++.   .+|++++.|+++++|++...+.     +    .+...|...|++++++|+.+ +++|+.|.+.+||++.
T Consensus       414 vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le  493 (775)
T KOG0319|consen  414 VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE  493 (775)
T ss_pred             cceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc
Confidence            99999976   8999999999999999976221     1    12237999999999999999 9999999999999886


Q ss_pred             CCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEE
Q 013717          282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSG  359 (437)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~  359 (437)
                          .......+.+|...|.++.|+|..+.+++++.|++|+||.+.+..    ..+.+.||...|....|-  +..|+++
T Consensus       494 ----~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS----ClkT~eGH~~aVlra~F~~~~~qliS~  565 (775)
T KOG0319|consen  494 ----QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS----CLKTFEGHTSAVLRASFIRNGKQLISA  565 (775)
T ss_pred             ----CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce----eeeeecCccceeEeeeeeeCCcEEEec
Confidence                336888999999999999999999999999999999999998776    677789999999888775  5599999


Q ss_pred             eCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717          360 SADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       360 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                      +.||-|++|+++++.   |+.++.+|.+.|.+++.++...     +++||+.||.|.+|.=.+
T Consensus       566 ~adGliKlWnikt~e---C~~tlD~H~DrvWaL~~~~~~~-----~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  566 GADGLIKLWNIKTNE---CEMTLDAHNDRVWALSVSPLLD-----MFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             cCCCcEEEEeccchh---hhhhhhhccceeEEEeecCccc-----eeEecCCCeEEEEeecCc
Confidence            999999999999987   9999999999999999999885     799999999999997433

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.1e-36  Score=267.82  Aligned_cols=352  Identities=19%  Similarity=0.287  Sum_probs=261.4

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcc-------eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCc
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLC-------INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTT  128 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~-------~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~  128 (437)
                      .++.|+|+...++ ++....+.+|......       .+.+++ ||.+.|.++.|+  .++|++|+.| .+++|+++..+
T Consensus       100 ~~i~fSPng~~fa-v~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k  178 (893)
T KOG0291|consen  100 GAIKFSPNGKFFA-VGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNK  178 (893)
T ss_pred             ceEEECCCCcEEE-EEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccc
Confidence            5788888888777 4555678888773322       344555 999999999999  8999999999 99999999843


Q ss_pred             eeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCC--ccccc---------ccc---------------
Q 013717          129 WTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPT--KHHKL---------KTT---------------  180 (437)
Q Consensus       129 ~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~--~~~~~---------~~~---------------  180 (437)
                      ......+   .+|...|.+.-|..+.  +++.+.||.+.+|.....  .....         ...               
T Consensus       179 ~~~~~~l---~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k  255 (893)
T KOG0291|consen  179 NLFTYAL---NGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYK  255 (893)
T ss_pred             ccceEec---cCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEE
Confidence            3223333   7899999999998554  999999999999987621  00000         000               


Q ss_pred             -----cCcc-ccceeeecCCCC-eeEEeeccc-------------eeeecCCCcEEEEEeCC--CeEEEEECC-CcEEEE
Q 013717          181 -----LPTV-NDRLLRFMLPNS-YVTVRRHKK-------------KLWIEHGDAVTGLAVNN--GLIYSVSWD-KSLKIW  237 (437)
Q Consensus       181 -----~~~~-~~~~~~~~~~~~-~~~~~~~~~-------------~~~~~~~~~v~~~~~~~--~~l~~~~~d-g~i~iw  237 (437)
                           +... .......+.... .+.+.....             +.+.-...+|..++|+.  +.++.|+.. |++-||
T Consensus       256 ~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVw  335 (893)
T KOG0291|consen  256 TKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVW  335 (893)
T ss_pred             EEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEE
Confidence                 0000 000001111111 111111111             11112335677788874  888887765 889999


Q ss_pred             ECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe
Q 013717          238 RASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA  316 (437)
Q Consensus       238 d~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (437)
                      +.+....+...++|...+++++++|||. +++|+.||+|+|||...+    .++.++..|.+.|+.+.|+..|+.+++.+
T Consensus       336 eWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg----fC~vTFteHts~Vt~v~f~~~g~~llssS  411 (893)
T KOG0291|consen  336 EWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG----FCFVTFTEHTSGVTAVQFTARGNVLLSSS  411 (893)
T ss_pred             EeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc----eEEEEeccCCCceEEEEEEecCCEEEEee
Confidence            9998888888889999999999999999 999999999999976544    58999999999999999999999999999


Q ss_pred             CCCcEEEEECCCCccceEEeeeecccccceEEEE--eeCCEEEEEeCCC-cEEEeeCCCCCCeeeeeeecCCCCCeeEEE
Q 013717          317 CDRSILVWDREDSANHMVVTGALRGHGKAILCLI--NVAGLLMSGSADR-TVRIWQRGSDGRFGCLAVLEGHTKPVKSLT  393 (437)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~  393 (437)
                      .||+|+.||+...++-..+...   ......|++  ++|.++.+|+.|. .|++|++.+++   ++..+.||.+||.+++
T Consensus       412 LDGtVRAwDlkRYrNfRTft~P---~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq---llDiLsGHEgPVs~l~  485 (893)
T KOG0291|consen  412 LDGTVRAWDLKRYRNFRTFTSP---EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ---LLDILSGHEGPVSGLS  485 (893)
T ss_pred             cCCeEEeeeecccceeeeecCC---CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe---eeehhcCCCCcceeeE
Confidence            9999999999876654444322   222334555  4477888888886 59999999998   8999999999999999


Q ss_pred             EEccCCCCceEEEEEecCCCcEEEEeeccCCCCCCCe
Q 013717          394 AVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSSPL  430 (437)
Q Consensus       394 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  430 (437)
                      |+|.++     .|+++|.|.+||+|++-......+++
T Consensus       486 f~~~~~-----~LaS~SWDkTVRiW~if~s~~~vEtl  517 (893)
T KOG0291|consen  486 FSPDGS-----LLASGSWDKTVRIWDIFSSSGTVETL  517 (893)
T ss_pred             EccccC-----eEEeccccceEEEEEeeccCceeeeE
Confidence            999986     79999999999999997764443333

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-37  Score=254.32  Aligned_cols=302  Identities=24%  Similarity=0.390  Sum_probs=252.5

Q ss_pred             ccccccCCCceeEEecCCCcc-eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcc
Q 013717           69 PSLQKLSPDETINFSSASHLC-INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSG  143 (437)
Q Consensus        69 ~~~~s~s~dg~i~~~~~~~~~-~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~  143 (437)
                      +.+..+.+.+..+....-.+. .+.+.+ ||..+|+.+-|+  --.++++++| +|++||..+++.  ...+   .+|..
T Consensus        77 ~el~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~L---rGHt~  151 (406)
T KOG0295|consen   77 DELIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--ERSL---RGHTD  151 (406)
T ss_pred             cccccCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh--hhhh---hcccc
Confidence            445555555555444432222 444555 999999999999  5667777789 999999999644  5555   78999


Q ss_pred             cEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717          144 SVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN  221 (437)
Q Consensus       144 ~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  221 (437)
                      .|..|.|+..+  +++++.|-.+++||.++..  ..++.                           +.+|+..|.+++|-
T Consensus       152 sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~--~c~ks---------------------------~~gh~h~vS~V~f~  202 (406)
T KOG0295|consen  152 SVFDISFDASGKYLATCSSDLSAKLWDFDTFF--RCIKS---------------------------LIGHEHGVSSVFFL  202 (406)
T ss_pred             ceeEEEEecCccEEEecCCccchhheeHHHHH--HHHHH---------------------------hcCcccceeeEEEE
Confidence            99999999443  9999999999999998631  22221                           23699999999998


Q ss_pred             C--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccc
Q 013717          222 N--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKS  298 (437)
Q Consensus       222 ~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  298 (437)
                      |  +++++++.|.+|+.|++.++.++.++.+|...|..++.+.||. +++++.|.+|++|-+.+.    .+...++.|+-
T Consensus       203 P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~----~~k~~lR~hEh  278 (406)
T KOG0295|consen  203 PLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK----QCKAELREHEH  278 (406)
T ss_pred             ecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccc----hhhhhhhcccc
Confidence            8  9999999999999999999999999999999999999999999 999999999999966543    35567788999


Q ss_pred             cEEEEEEccC---------------CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeC
Q 013717          299 AVNALALSDD---------------GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSA  361 (437)
Q Consensus       299 ~i~~~~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~  361 (437)
                      +|.+++|.|.               +.++.+++.|++|++||+.++.    +...+.+|...|..++++  |.||+++.+
T Consensus       279 ~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~----cL~tL~ghdnwVr~~af~p~Gkyi~ScaD  354 (406)
T KOG0295|consen  279 PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM----CLFTLVGHDNWVRGVAFSPGGKYILSCAD  354 (406)
T ss_pred             ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe----EEEEEecccceeeeeEEcCCCeEEEEEec
Confidence            9999999772               2589999999999999999886    455578899999999988  669999999


Q ss_pred             CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEee
Q 013717          362 DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV  420 (437)
Q Consensus       362 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~  420 (437)
                      |+++++||+++.+   +...+.+|..-|++++|..+.+     +++||+-|.++++|..
T Consensus       355 Dktlrvwdl~~~~---cmk~~~ah~hfvt~lDfh~~~p-----~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  355 DKTLRVWDLKNLQ---CMKTLEAHEHFVTSLDFHKTAP-----YVVTGSVDQTVKVWEC  405 (406)
T ss_pred             CCcEEEEEeccce---eeeccCCCcceeEEEecCCCCc-----eEEeccccceeeeeec
Confidence            9999999999877   9999999999999999998885     8999999999999974

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-36  Score=240.21  Aligned_cols=265  Identities=24%  Similarity=0.349  Sum_probs=218.3

Q ss_pred             ccccccccCCCceeEEecCCC----cceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccC
Q 013717           67 SVPSLQKLSPDETINFSSASH----LCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDN  138 (437)
Q Consensus        67 ~~~~~~s~s~dg~i~~~~~~~----~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~  138 (437)
                      ....+.+.+.|..+.+|++..    .+..++.+ ||...|..++.+  |++.++++.| .+++||+.++  +....|   
T Consensus        27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g--~~t~~f---  101 (315)
T KOG0279|consen   27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG--ESTRRF---  101 (315)
T ss_pred             CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC--cEEEEE---
Confidence            356788999999999999943    34557777 999999999998  9999999999 9999999996  444445   


Q ss_pred             CCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717          139 DSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT  216 (437)
Q Consensus       139 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  216 (437)
                      .+|...|.+++|+++.  +++|+.|.+|++|++..........                             ..+.+.|.
T Consensus       102 ~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~-----------------------------~~~~~WVs  152 (315)
T KOG0279|consen  102 VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHE-----------------------------DSHREWVS  152 (315)
T ss_pred             EecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEec-----------------------------CCCcCcEE
Confidence            5899999999999664  9999999999999998654332222                             12478999


Q ss_pred             EEEeCC----CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeE
Q 013717          217 GLAVNN----GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIA  291 (437)
Q Consensus       217 ~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~  291 (437)
                      |+.|+|    .+|++++.|++|++||+++.+....+.+|.+.++.++++|||. +++|+.||.+.+||++...    .+.
T Consensus       153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k----~ly  228 (315)
T KOG0279|consen  153 CVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK----NLY  228 (315)
T ss_pred             EEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc----eeE
Confidence            999999    5899999999999999999999999999999999999999999 9999999999999997654    344


Q ss_pred             EeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccc-----ccceEEEEee--CCEEEEEeCCCc
Q 013717          292 TLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH-----GKAILCLINV--AGLLMSGSADRT  364 (437)
Q Consensus       292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~i~~~~~~--~~~l~~~~~dg~  364 (437)
                      .+ .+...|.+++|+|+...|+.+. +..|+|||+++......+.....+.     .....+++|+  |..|++|-.|+.
T Consensus       229 sl-~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~  306 (315)
T KOG0279|consen  229 SL-EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV  306 (315)
T ss_pred             ec-cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence            44 4788999999999986666664 5569999999877655554433333     3334666776  669999999999


Q ss_pred             EEEeeCC
Q 013717          365 VRIWQRG  371 (437)
Q Consensus       365 i~iwd~~  371 (437)
                      |++|.+.
T Consensus       307 irv~qv~  313 (315)
T KOG0279|consen  307 IRVWQVA  313 (315)
T ss_pred             EEEEEee
Confidence            9999875

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=5.5e-38  Score=260.74  Aligned_cols=275  Identities=22%  Similarity=0.338  Sum_probs=233.7

Q ss_pred             ccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCC
Q 013717           97 HKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTP  171 (437)
Q Consensus        97 h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~  171 (437)
                      -..+|..+.|.  |+.|++|+.. .+.+|+..+-..+  ..+   ..|..+|.++.|+.+.  +++|+.+|.|++|+.+-
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE--til---QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm  169 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE--TIL---QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM  169 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHH--HHh---hhhcccceeEEEccCCCEEEEcCCCceEEecccch
Confidence            34578889998  8999999999 9999998763222  222   5799999999999665  99999999999999874


Q ss_pred             CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee
Q 013717          172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK  249 (437)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~  249 (437)
                      ... +.+.                             ..|...|++++|+|  ..+++++.||+|+|||....+....+.
T Consensus       170 nnV-k~~~-----------------------------ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~  219 (464)
T KOG0284|consen  170 NNV-KIIQ-----------------------------AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR  219 (464)
T ss_pred             hhh-HHhh-----------------------------HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec
Confidence            422 1111                             13558999999999  899999999999999999998888899


Q ss_pred             cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 013717          250 AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRED  328 (437)
Q Consensus       250 ~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (437)
                      +|.-.|.+++|+|..- +++|+.|..|++||.+++    .++.++.+|+..|..+.|+|++++|++++.|..+++||+++
T Consensus       220 GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg----~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~  295 (464)
T KOG0284|consen  220 GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG----SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT  295 (464)
T ss_pred             cCCCCcceeccCCccceeEEccCCceeEeecCCCc----chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH
Confidence            9999999999999766 999999999999987765    47888899999999999999999999999999999999985


Q ss_pred             CccceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEE
Q 013717          329 SANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVS  405 (437)
Q Consensus       329 ~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  405 (437)
                      .+.    ...+++|...+.++.|++-   +|.+|+.||.|..|.+...+  .....-.+|...|.+++|+|-+     .+
T Consensus       296 mkE----l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlG-----hi  364 (464)
T KOG0284|consen  296 MKE----LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLG-----HI  364 (464)
T ss_pred             hHH----HHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc--cccCCCcccccceeeeeccccc-----ee
Confidence            543    3446889999999998854   99999999999999998544  2344456899999999999998     58


Q ss_pred             EEEecCCCcEEEEeec
Q 013717          406 VFSGSLDGEIRAWQVS  421 (437)
Q Consensus       406 l~s~~~dg~i~iw~~~  421 (437)
                      |++|+.|.++++|.-.
T Consensus       365 l~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  365 LATGSNDRTVRFWTRN  380 (464)
T ss_pred             EeecCCCcceeeeccC
Confidence            9999999999999744

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=3.4e-38  Score=267.53  Aligned_cols=286  Identities=16%  Similarity=0.269  Sum_probs=239.4

Q ss_pred             cceeeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEec
Q 013717           88 LCINSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQ  160 (437)
Q Consensus        88 ~~~~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~  160 (437)
                      +...++.+ ||+..|+++.|.   +.+|++++.| .|+||++-. ...+++++   .+|..+|..++|++.+  +++++.
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf---~gH~k~Vrd~~~s~~g~~fLS~sf  278 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTF---KGHRKPVRDASFNNCGTSFLSASF  278 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec-Ccceehhh---hcchhhhhhhhccccCCeeeeeec
Confidence            45667778 999999999997   8999999999 999999987 35677777   7999999999999655  999999


Q ss_pred             CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEE
Q 013717          161 DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIW  237 (437)
Q Consensus       161 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iw  237 (437)
                      |+.|++||+++|+....+.                               ....++|+.|+|   +.+++|+.|+.|+.|
T Consensus       279 D~~lKlwDtETG~~~~~f~-------------------------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~w  327 (503)
T KOG0282|consen  279 DRFLKLWDTETGQVLSRFH-------------------------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQW  327 (503)
T ss_pred             ceeeeeeccccceEEEEEe-------------------------------cCCCceeeecCCCCCcEEEEecCCCcEEEE
Confidence            9999999999998766554                               455778999988   799999999999999


Q ss_pred             ECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe
Q 013717          238 RASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA  316 (437)
Q Consensus       238 d~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (437)
                      |+++++.++++..|-+.|..+.|-++|+ +++.+.|+.++||+.+....   .......+.-...++..+|+++++++-+
T Consensus       328 DiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~---ik~i~~~~~hsmP~~~~~P~~~~~~aQs  404 (503)
T KOG0282|consen  328 DIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP---IKNIADPEMHTMPCLTLHPNGKWFAAQS  404 (503)
T ss_pred             eccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc---chhhcchhhccCcceecCCCCCeehhhc
Confidence            9999999999999999999999999999 99999999999998765431   1111222344567899999999999999


Q ss_pred             CCCcEEEEECCCCccceEEeeeecccccce--EEEE--eeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEE
Q 013717          317 CDRSILVWDREDSANHMVVTGALRGHGKAI--LCLI--NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSL  392 (437)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i--~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l  392 (437)
                      .|+.|.+|.+... -.......+.+|...=  +.+.  +++.+|++|..||.+.+||.++-+   ++..+.+|.+++..+
T Consensus       405 ~dN~i~ifs~~~~-~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k---l~~~lkah~~~ci~v  480 (503)
T KOG0282|consen  405 MDNYIAIFSTVPP-FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK---LVSKLKAHDQPCIGV  480 (503)
T ss_pred             cCceEEEEecccc-cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh---hhhccccCCcceEEE
Confidence            9999999997543 2222334456665432  3334  445699999999999999999866   889999999999999


Q ss_pred             EEEccCCCCceEEEEEecCCCcEEEEe
Q 013717          393 TAVTEEGQNGVVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       393 ~~~~~~~~~~~~~l~s~~~dg~i~iw~  419 (437)
                      .|+|....    .++|||.||.|++|+
T Consensus       481 ~wHP~e~S----kvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  481 DWHPVEPS----KVATCGWDGLIKIWD  503 (503)
T ss_pred             EecCCCcc----eeEecccCceeEecC
Confidence            99998876    799999999999996

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5.5e-37  Score=275.35  Aligned_cols=279  Identities=21%  Similarity=0.365  Sum_probs=231.1

Q ss_pred             CCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecC
Q 013717           86 SHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQD  161 (437)
Q Consensus        86 ~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~d  161 (437)
                      .....+..++ .-...++|..|+  +..||.|-.| .|++|.+...+++.++.       ...+.       .+=+.+.|
T Consensus       365 ~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~-------~~~l~-------~~d~~sad  430 (707)
T KOG0263|consen  365 SLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKD-------ASDLS-------NIDTESAD  430 (707)
T ss_pred             CCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccc-------hhhhc-------cccccccc
Confidence            3345566666 667889999999  7889999999 99999998743333222       11111       12233334


Q ss_pred             CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEEC
Q 013717          162 CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRA  239 (437)
Q Consensus       162 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~  239 (437)
                      -.+.+-|-+....                              .+.+.+|.++|..+.|+|  ++|+++++|+++|+|.+
T Consensus       431 ~~~~~~D~~~~~~------------------------------~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl  480 (707)
T KOG0263|consen  431 VDVDMLDDDSSGT------------------------------SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSL  480 (707)
T ss_pred             hhhhhccccCCce------------------------------eEEeecCCCceeeeeecccccceeeccCCcceeeeec
Confidence            3344555443321                              123468999999999999  99999999999999999


Q ss_pred             CCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC
Q 013717          240 SDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD  318 (437)
Q Consensus       240 ~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  318 (437)
                      .+..++..+++|..+|+.+.|+|.|. ||+++.|++-++|.....    .+++.+.+|.+.|.|+.|+|+..|+++|+.|
T Consensus       481 ~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~----~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD  556 (707)
T KOG0263|consen  481 DTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN----KPLRIFAGHLSDVDCVSFHPNSNYVATGSSD  556 (707)
T ss_pred             ccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC----CchhhhcccccccceEEECCcccccccCCCC
Confidence            99999999999999999999999999 999999999999976653    5788899999999999999999999999999


Q ss_pred             CcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717          319 RSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT  396 (437)
Q Consensus       319 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~  396 (437)
                      .+|++||+.++..    .+.+.||.++|.++++++.  +|++|+.||.|.+||+.++.   ++..+.+|.+.|.+|.|+.
T Consensus       557 ~tVRlWDv~~G~~----VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~---~v~~l~~Ht~ti~SlsFS~  629 (707)
T KOG0263|consen  557 RTVRLWDVSTGNS----VRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS---LVKQLKGHTGTIYSLSFSR  629 (707)
T ss_pred             ceEEEEEcCCCcE----EEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc---chhhhhcccCceeEEEEec
Confidence            9999999998874    4556889999999888755  99999999999999999987   8999999999999999999


Q ss_pred             cCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          397 EEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       397 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      ++.     .|++||.|.+|++||+....
T Consensus       630 dg~-----vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  630 DGN-----VLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             CCC-----EEEecCCCCeEEEEEchhhc
Confidence            996     79999999999999987543

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.9e-35  Score=249.99  Aligned_cols=305  Identities=18%  Similarity=0.267  Sum_probs=254.6

Q ss_pred             eccccc-cccccCCCceeEEecCCC-cceeeee------c-------CccCCeEEEEee--CCEEEEEecC-eEEEEeCC
Q 013717           64 TLPSVP-SLQKLSPDETINFSSASH-LCINSVQ------L-------GHKLPIGCIAVH--HNFLYAASSH-EINVYDRT  125 (437)
Q Consensus        64 ~~~~~~-~~~s~s~dg~i~~~~~~~-~~~~~~~------~-------~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~  125 (437)
                      -.|... .+++.+.|...++|++.. ...+...      +       .-+..|++|+|+  |.+||+|+.| .+++|+..
T Consensus       186 WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~  265 (524)
T KOG0273|consen  186 WNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKD  265 (524)
T ss_pred             cCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecC
Confidence            345555 788888999999999853 2222221      1       224689999999  9999999999 99999998


Q ss_pred             CCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeec
Q 013717          126 GTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRH  203 (437)
Q Consensus       126 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (437)
                      ..   .+.++   ..|.++|.+|.|+..+  |++++.|+++.+||..++...+.+.                        
T Consensus       266 G~---l~~tl---~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~------------------------  315 (524)
T KOG0273|consen  266 GN---LISTL---GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE------------------------  315 (524)
T ss_pred             ch---hhhhh---hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee------------------------
Confidence            73   45555   5699999999999544  9999999999999998886544433                        


Q ss_pred             cceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCC
Q 013717          204 KKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKP  281 (437)
Q Consensus       204 ~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~  281 (437)
                            -|..+-.++.|-. ..+++.+.|+.|+++.+...+++.++.+|.++|.+|.|+|.+. |++++.|++++||.+.
T Consensus       316 ------~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~  389 (524)
T KOG0273|consen  316 ------FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG  389 (524)
T ss_pred             ------eccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecC
Confidence                  3777767888876 8999999999999999999999999999999999999999999 9999999999999765


Q ss_pred             CCcccceeeEEeeCccccEEEEEEccCC---------CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee
Q 013717          282 FNEKRHALIATLEKHKSAVNALALSDDG---------TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV  352 (437)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~  352 (437)
                      ..    .....+.+|...|..+.|+|+|         ..+++++.|++|++||+..+.    ....+..|..+|.+++++
T Consensus       390 ~~----~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv----~i~~f~kH~~pVysvafS  461 (524)
T KOG0273|consen  390 QS----NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV----PIHTLMKHQEPVYSVAFS  461 (524)
T ss_pred             CC----cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc----eeEeeccCCCceEEEEec
Confidence            33    3677788999999999999954         479999999999999998887    445567799999999998


Q ss_pred             CC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          353 AG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       353 ~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      ++  ++|+|+.||.|.+|+.++++   .++.+.+ .+.|..++|+.+++     +|..+-.||.+++-|+.
T Consensus       462 ~~g~ylAsGs~dg~V~iws~~~~~---l~~s~~~-~~~Ifel~Wn~~G~-----kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  462 PNGRYLASGSLDGCVHIWSTKTGK---LVKSYQG-TGGIFELCWNAAGD-----KLGACASDGSVCVLDLR  523 (524)
T ss_pred             CCCcEEEecCCCCeeEeccccchh---eeEeecC-CCeEEEEEEcCCCC-----EEEEEecCCCceEEEec
Confidence            54  99999999999999999977   6666664 55699999999986     58888889999999875

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.6e-35  Score=243.97  Aligned_cols=295  Identities=25%  Similarity=0.384  Sum_probs=244.6

Q ss_pred             EEecCCCcceeeeecCccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe--CCe---
Q 013717           81 NFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC--DGK---  154 (437)
Q Consensus        81 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~---  154 (437)
                      .|-..-...+....+-|.+.|.++...++++++|+.| .+++||....   ....+   .+|.++|.+++|.  +..   
T Consensus        88 EYv~~~~aP~pl~~~~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk---~~~~~---~Ght~~ik~v~~v~~n~~~~~  161 (423)
T KOG0313|consen   88 EYVEAITAPKPLQCFLHDDWVSSVKGASKWILTGSYDGTSRIWDLKGK---SIKTI---VGHTGPIKSVAWVIKNSSSCL  161 (423)
T ss_pred             EEEEecCCCCccccccchhhhhhhcccCceEEEeecCCeeEEEecCCc---eEEEE---ecCCcceeeeEEEecCCccce
Confidence            3333344456666678999999999999999999999 9999999873   34444   5899999999986  222   


Q ss_pred             EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCC
Q 013717          155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDK  232 (437)
Q Consensus       155 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg  232 (437)
                      |++++.|.++++|.++.++........                          -.||...|.++...+  ..+++|+.|.
T Consensus       162 fvsas~Dqtl~Lw~~~~~~~~~~~~~~--------------------------~~GHk~~V~sVsv~~sgtr~~SgS~D~  215 (423)
T KOG0313|consen  162 FVSASMDQTLRLWKWNVGENKVKALKV--------------------------CRGHKRSVDSVSVDSSGTRFCSGSWDT  215 (423)
T ss_pred             EEEecCCceEEEEEecCchhhhhHHhH--------------------------hcccccceeEEEecCCCCeEEeecccc
Confidence            999999999999999877644332211                          137999999999877  8999999999


Q ss_pred             cEEEEECCC-------------------------cceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccc
Q 013717          233 SLKIWRASD-------------------------LRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRH  287 (437)
Q Consensus       233 ~i~iwd~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~  287 (437)
                      .|+||+..+                         +.++..+.+|.++|.++.|++.+.+.+++.|.+|+.||+..+.   
T Consensus       216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~---  292 (423)
T KOG0313|consen  216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGG---  292 (423)
T ss_pred             eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeeccc---
Confidence            999999321                         2345677899999999999986669999999999999998765   


Q ss_pred             eeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCCCc
Q 013717          288 ALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRT  364 (437)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~  364 (437)
                       ....+. ....++++..+|..++|++|+.|..|++||.+++.. ......+.+|...|.++.+++.   .|++|+.|++
T Consensus       293 -~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g-s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t  369 (423)
T KOG0313|consen  293 -LKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG-SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT  369 (423)
T ss_pred             -ceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCC-ceeEEeeecchhhhhheecCCCCceEEEEEecCCe
Confidence             233333 467899999999999999999999999999998843 3466778999999999999876   8999999999


Q ss_pred             EEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          365 VRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       365 i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      +++||+++..  .++..+.+|.+.|.++.|....      ++++||.|.+|+++.-.
T Consensus       370 ~klWDvRS~k--~plydI~~h~DKvl~vdW~~~~------~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  370 VKLWDVRSTK--APLYDIAGHNDKVLSVDWNEGG------LIVSGGADNKLRIFKGS  418 (423)
T ss_pred             EEEEEeccCC--CcceeeccCCceEEEEeccCCc------eEEeccCcceEEEeccc
Confidence            9999999866  5889999999999999999876      79999999999998643

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=9.1e-35  Score=249.18  Aligned_cols=321  Identities=20%  Similarity=0.261  Sum_probs=261.0

Q ss_pred             ceeeccccccccccCCCceeEEecCCC-cceeeeec-CccCCeEEEEee--CCEEEEEecC-----eEEEEeCCCCceee
Q 013717           61 SLQTLPSVPSLQKLSPDETINFSSASH-LCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-----EINVYDRTGTTWTS  131 (437)
Q Consensus        61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~-~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-----~v~vwd~~~~~~~~  131 (437)
                      -..++|+...++++...|.+++|+... ...+...+ .-.++|..++|+  ++.+++.+++     .+.+||..+    .
T Consensus        64 VAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~----S  139 (603)
T KOG0318|consen   64 VAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGN----S  139 (603)
T ss_pred             EEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCC----c
Confidence            458899999999999999999999976 55555566 788999999999  7777777654     455666544    2


Q ss_pred             eeccccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceee
Q 013717          132 INTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLW  208 (437)
Q Consensus       132 ~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (437)
                      ...+   .+|...|+++.|-|.+   +++|+.|++|.+|+-...+....                              +
T Consensus       140 vGei---~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s------------------------------~  186 (603)
T KOG0318|consen  140 VGEI---TGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSS------------------------------F  186 (603)
T ss_pred             ccee---eccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeec------------------------------c
Confidence            3333   6899999999999776   99999999999998654432222                              2


Q ss_pred             ecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee---cccccEEEEEEecCCe-EEEEeCCCeEEEecCCC
Q 013717          209 IEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK---AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPF  282 (437)
Q Consensus       209 ~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~  282 (437)
                      ..|..-|+|+.|+|  .++++++.||+|.+||-.+++.+..+.   +|++.|.+++|+||+. +++++.|.+++|||+..
T Consensus       187 r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~  266 (603)
T KOG0318|consen  187 REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST  266 (603)
T ss_pred             cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec
Confidence            36999999999999  999999999999999999999999998   8999999999999999 99999999999999875


Q ss_pred             Ccc---------------------------------------cceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEE
Q 013717          283 NEK---------------------------------------RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILV  323 (437)
Q Consensus       283 ~~~---------------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  323 (437)
                      +..                                       ....+..+.+|...|+++..+||+++|++|+.||.|.-
T Consensus       267 ~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~  346 (603)
T KOG0318|consen  267 NSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINS  346 (603)
T ss_pred             cceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEE
Confidence            431                                       11234456789999999999999999999999999999


Q ss_pred             EECCCCccc-----------------------------------------------------------------------
Q 013717          324 WDREDSANH-----------------------------------------------------------------------  332 (437)
Q Consensus       324 ~d~~~~~~~-----------------------------------------------------------------------  332 (437)
                      |+..++...                                                                       
T Consensus       347 W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~  426 (603)
T KOG0318|consen  347 WDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACIS  426 (603)
T ss_pred             EecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecC
Confidence            998611000                                                                       


Q ss_pred             ---------------------------------------e-----------EEeeeecccccceEEEEeeCC--EEEEEe
Q 013717          333 ---------------------------------------M-----------VVTGALRGHGKAILCLINVAG--LLMSGS  360 (437)
Q Consensus       333 ---------------------------------------~-----------~~~~~~~~~~~~i~~~~~~~~--~l~~~~  360 (437)
                                                             .           ........|.+.+++++++++  +||+|.
T Consensus       427 ~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~D  506 (603)
T KOG0318|consen  427 DIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGD  506 (603)
T ss_pred             cEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEec
Confidence                                                   0           000012347778888888876  999999


Q ss_pred             CCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          361 ADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       361 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      ..+.+.+||+.+.+.  ....+.-|...|.+|+|+|+.     ++++||+-|-+|.||+++.+..
T Consensus       507 a~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~n-----~~vATGSlDt~Viiysv~kP~~  564 (603)
T KOG0318|consen  507 ASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPNN-----KLVATGSLDTNVIIYSVKKPAK  564 (603)
T ss_pred             cCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCCc-----eEEEeccccceEEEEEccChhh
Confidence            999999999998762  445556699999999999998     4899999999999999987653

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-36  Score=252.94  Aligned_cols=287  Identities=22%  Similarity=0.322  Sum_probs=233.3

Q ss_pred             cceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCC-ceeeeeccccCCCCcccEEEEEEeCCe--EEEEec
Q 013717           88 LCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGT-TWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQ  160 (437)
Q Consensus        88 ~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~  160 (437)
                      +.+..+++ .|.+.|.-+.|+  |+|||+++.| +..+|++... ..+...++   .+|..+|..|.|+||-  |++|+.
T Consensus       213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl---vgh~~~V~yi~wSPDdryLlaCg~  289 (519)
T KOG0293|consen  213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL---VGHSQPVSYIMWSPDDRYLLACGF  289 (519)
T ss_pred             CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee---ecccCceEEEEECCCCCeEEecCc
Confidence            34555667 999999999999  9999999999 9999998652 33444555   7899999999999764  999999


Q ss_pred             CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEE
Q 013717          161 DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWR  238 (437)
Q Consensus       161 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd  238 (437)
                      |..+.+||+.++.......                             .++...+.+++|.|  ..+++|+.|+.+..||
T Consensus       290 ~e~~~lwDv~tgd~~~~y~-----------------------------~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wd  340 (519)
T KOG0293|consen  290 DEVLSLWDVDTGDLRHLYP-----------------------------SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWD  340 (519)
T ss_pred             hHheeeccCCcchhhhhcc-----------------------------cCcCCCcceeEEccCCceeEecCCCCcEEEec
Confidence            9999999999998665544                             23567899999999  7899999999999999


Q ss_pred             CCCcceEEEeecc-cccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe
Q 013717          239 ASDLRCLESIKAH-EDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA  316 (437)
Q Consensus       239 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (437)
                      +.. +.+..+++. ...|.++++.+||+ +++.+.|..|++|+.......    . +.....+|+++..+.||+++++.-
T Consensus       341 lDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr----~-lise~~~its~~iS~d~k~~LvnL  414 (519)
T KOG0293|consen  341 LDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR----G-LISEEQPITSFSISKDGKLALVNL  414 (519)
T ss_pred             CCc-chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh----c-cccccCceeEEEEcCCCcEEEEEc
Confidence            854 455555533 35699999999999 888889999999987543221    1 223567899999999999999999


Q ss_pred             CCCcEEEEECCCCccceEEeeeecccccce----EEEEeeC-CEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeE
Q 013717          317 CDRSILVWDREDSANHMVVTGALRGHGKAI----LCLINVA-GLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKS  391 (437)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i----~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~  391 (437)
                      .+..+++||++...    +...+.||...-    .|+.... .++++|++|+.|+||+..+++   ++.++.||...|++
T Consensus       415 ~~qei~LWDl~e~~----lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk---ll~~LsGHs~~vNc  487 (519)
T KOG0293|consen  415 QDQEIHLWDLEENK----LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK---LLAVLSGHSKTVNC  487 (519)
T ss_pred             ccCeeEEeecchhh----HHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc---eeEeecCCcceeeE
Confidence            99999999998655    333445554432    2333222 399999999999999999988   99999999999999


Q ss_pred             EEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          392 LTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       392 l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      ++|+|..+.    ++++||+||+||||.....
T Consensus       488 VswNP~~p~----m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  488 VSWNPADPE----MFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             EecCCCCHH----HhhccCCCCeEEEecCCcc
Confidence            999999886    9999999999999987643

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.7e-36  Score=245.84  Aligned_cols=268  Identities=25%  Similarity=0.372  Sum_probs=235.5

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTF  135 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~  135 (437)
                      ..+-++|+...+++.+.|++|.+|+..... +...+ ||.+.|..++|+  |.+||+++.| .+++||.+.. .++++.+
T Consensus       112 t~v~~hp~~~~v~~as~d~tikv~D~~tg~-~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-~~c~ks~  189 (406)
T KOG0295|consen  112 TRVIFHPSEALVVSASEDATIKVFDTETGE-LERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-FRCIKSL  189 (406)
T ss_pred             eeeeeccCceEEEEecCCceEEEEEccchh-hhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH-HHHHHHh
Confidence            466789999999999999999999997744 47777 999999999999  9999999999 8999999874 3344443


Q ss_pred             ccCCCCcccEEEEEEeCC--eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717          136 NDNDSSSGSVKSVTFCDG--KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD  213 (437)
Q Consensus       136 ~~~~~h~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (437)
                         .+|.-.|.+++|-|.  .+++++.|.+|+.|++.++-....+                              .+|..
T Consensus       190 ---~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~------------------------------~~h~e  236 (406)
T KOG0295|consen  190 ---IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTF------------------------------PGHSE  236 (406)
T ss_pred             ---cCcccceeeEEEEecCCeeeecccccceeEEecccceeEEec------------------------------cCchH
Confidence               789999999999854  4999999999999999998655443                              46889


Q ss_pred             cEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecC---------------Ce-EEEEeCCCeE
Q 013717          214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAG---------------GT-VYTGSADRKI  275 (437)
Q Consensus       214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~-l~~~~~dg~v  275 (437)
                      .|..+..+.  .++++++.|.+|++|-+.++++...++.|+.+|.+++|-|.               +. +.+++.|++|
T Consensus       237 wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI  316 (406)
T KOG0295|consen  237 WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI  316 (406)
T ss_pred             hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence            999999987  88999999999999999999999999999999999999753               13 8899999999


Q ss_pred             EEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-
Q 013717          276 RVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-  354 (437)
Q Consensus       276 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  354 (437)
                      ++||+.++    .++.++.+|.+.|..++|+|.|+||+++..|+++++||+++.+    ....+..|..-+++++++.+ 
T Consensus       317 k~wdv~tg----~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~----cmk~~~ah~hfvt~lDfh~~~  388 (406)
T KOG0295|consen  317 KIWDVSTG----MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ----CMKTLEAHEHFVTSLDFHKTA  388 (406)
T ss_pred             EEEeccCC----eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce----eeeccCCCcceeEEEecCCCC
Confidence            99988765    5889999999999999999999999999999999999998776    44556689999999999866 


Q ss_pred             -EEEEEeCCCcEEEeeC
Q 013717          355 -LLMSGSADRTVRIWQR  370 (437)
Q Consensus       355 -~l~~~~~dg~i~iwd~  370 (437)
                       ++++|+-|.++++|.-
T Consensus       389 p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  389 PYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             ceEEeccccceeeeeec
Confidence             9999999999999964

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=3.9e-35  Score=240.61  Aligned_cols=317  Identities=14%  Similarity=0.171  Sum_probs=258.0

Q ss_pred             ceEEeccccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCC
Q 013717           52 YSVSLQSNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGT  127 (437)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~  127 (437)
                      |.....+.++++.+|+.+++++++.|..-.+|+..... ....+ ||.+.|+|+.|+  |.+||||+-+ .|+||+..++
T Consensus        60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg  138 (399)
T KOG0296|consen   60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG  138 (399)
T ss_pred             hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC
Confidence            34444566889999999999999999999999998766 45555 999999999999  9999999999 9999999996


Q ss_pred             ceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccc
Q 013717          128 TWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKK  205 (437)
Q Consensus       128 ~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (437)
                      ..+.  .+   ......|.-+.|+|..  |++|+.||.+-+|.+.++..                              .
T Consensus       139 ~~~~--~~---~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~------------------------------~  183 (399)
T KOG0296|consen  139 GEQW--KL---DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL------------------------------C  183 (399)
T ss_pred             ceEE--Ee---ecccCceEEEEecccccEEEeecCCCcEEEEECCCcce------------------------------e
Confidence            4332  22   1345678888888865  99999999999999987532                              2


Q ss_pred             eeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeec-ccccEEEEEEecCCe-EEEEeCCCeEEEecCC
Q 013717          206 KLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKA-HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKP  281 (437)
Q Consensus       206 ~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~  281 (437)
                      +++.+|..++++=.|.|  +.++++..||+|++||..+++++..+.. ......++.++..+. ++.|..++.+++-+..
T Consensus       184 kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~  263 (399)
T KOG0296|consen  184 KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNG  263 (399)
T ss_pred             eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccc
Confidence            34468999999999988  9999999999999999999999988862 345677888888887 8888888888887443


Q ss_pred             CCcccceeeEEee--------CccccEEEEEEcc---CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEE
Q 013717          282 FNEKRHALIATLE--------KHKSAVNALALSD---DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI  350 (437)
Q Consensus       282 ~~~~~~~~~~~~~--------~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~  350 (437)
                      +    .+.+....        .+...+.++.+.|   .=.+.|+|+.||+|.|||+...+....     -.|...|..+.
T Consensus       264 s----gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~-----c~he~~V~~l~  334 (399)
T KOG0296|consen  264 S----GKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI-----CEHEDGVTKLK  334 (399)
T ss_pred             c----ceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee-----ccCCCceEEEE
Confidence            3    23333332        2444455555554   556889999999999999987653332     34788899999


Q ss_pred             eeC-CEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          351 NVA-GLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       351 ~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      |.+ .+|++++.+|.|+.||.++++   ++.++.||..+|.+++.+|+.+     +++|+|.|++.+|+++.
T Consensus       335 w~~t~~l~t~c~~g~v~~wDaRtG~---l~~~y~GH~~~Il~f~ls~~~~-----~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  335 WLNTDYLLTACANGKVRQWDARTGQ---LKFTYTGHQMGILDFALSPQKR-----LVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EcCcchheeeccCceEEeeeccccc---eEEEEecCchheeEEEEcCCCc-----EEEEecCCCeEEEEecC
Confidence            998 599999999999999999998   9999999999999999999884     89999999999999875

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.7e-35  Score=269.68  Aligned_cols=283  Identities=28%  Similarity=0.499  Sum_probs=234.3

Q ss_pred             eeec-C-ccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeE
Q 013717           92 SVQL-G-HKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKI  164 (437)
Q Consensus        92 ~~~~-~-h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i  164 (437)
                      ...+ + |...|.|+.|+  |++|++++.+ .+++|+...........+   .+|...|..++|+++.  +++++.|++|
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l---~~h~~~v~~~~fs~d~~~l~s~s~D~ti  227 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL---SGHTRGVSDVAFSPDGSYLLSGSDDKTL  227 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc---cccccceeeeEECCCCcEEEEecCCceE
Confidence            4445 4 48999999999  9999999999 999999966432123333   6899999999999776  9999999999


Q ss_pred             EEEeCCCC-cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCC
Q 013717          165 RVWQLTPT-KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASD  241 (437)
Q Consensus       165 ~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~  241 (437)
                      ++||+... ...+                              .+.+|...|++++|++  +++++|+.|++|+|||+++
T Consensus       228 riwd~~~~~~~~~------------------------------~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~  277 (456)
T KOG0266|consen  228 RIWDLKDDGRNLK------------------------------TLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT  277 (456)
T ss_pred             EEeeccCCCeEEE------------------------------EecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC
Confidence            99999433 3332                              3347999999999999  7999999999999999999


Q ss_pred             cceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccc--cEEEEEEccCCCEEEEEeCC
Q 013717          242 LRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKS--AVNALALSDDGTVLFSGACD  318 (437)
Q Consensus       242 ~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d  318 (437)
                      ++++..+.+|.+.|++++|++++. |++++.|+.|++||+......  +...+..+..  +++++.|+|++.++++++.|
T Consensus       278 ~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d  355 (456)
T KOG0266|consen  278 GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNGKYLLSASLD  355 (456)
T ss_pred             CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee--eeecccCCCCCCceeEEEECCCCcEEEEecCC
Confidence            999999999999999999999999 999999999999998765422  3445555544  49999999999999999999


Q ss_pred             CcEEEEECCCCccceEEeeeecccccceEEE---E--eeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCC-CCCeeEE
Q 013717          319 RSILVWDREDSANHMVVTGALRGHGKAILCL---I--NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGH-TKPVKSL  392 (437)
Q Consensus       319 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~---~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l  392 (437)
                      +.+++||+..+...    ..+.+|...+.|+   .  ..+.++++|+.|+.|++||..++.   .+..+.+| ...+..+
T Consensus       356 ~~~~~w~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~---~~~~l~~h~~~~~~~~  428 (456)
T KOG0266|consen  356 RTLKLWDLRSGKSV----GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG---ILQRLEGHSKAAVSDL  428 (456)
T ss_pred             CeEEEEEccCCcce----eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc---hhhhhcCCCCCceecc
Confidence            99999999877643    3345555543333   2  235599999999999999999866   78899999 8999999


Q ss_pred             EEEccCCCCceEEEEEec--CCCcEEEEeec
Q 013717          393 TAVTEEGQNGVVSVFSGS--LDGEIRAWQVS  421 (437)
Q Consensus       393 ~~~~~~~~~~~~~l~s~~--~dg~i~iw~~~  421 (437)
                      ++++..+     ++++++  .|+.+++|..+
T Consensus       429 ~~~~~~~-----~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  429 SSHPTEN-----LIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             ccCCCcC-----eeeecCcCCCceEEEecCC
Confidence            9999885     788888  79999999865

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.3e-34  Score=258.07  Aligned_cols=343  Identities=21%  Similarity=0.361  Sum_probs=257.2

Q ss_pred             ceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccc
Q 013717           61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFN  136 (437)
Q Consensus        61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~  136 (437)
                      .+...|....++.+-.||.|++|+..+. .....+ ||...|+++.|+  |..|++||.| .|.+||+-....  ...+ 
T Consensus        70 ~l~~~~d~l~lAVGYaDGsVqif~~~s~-~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G--l~rL-  145 (888)
T KOG0306|consen   70 CLRSSDDILLLAVGYADGSVQIFSLESE-EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG--LFRL-  145 (888)
T ss_pred             EeeccCCcceEEEEecCceEEeeccCCC-ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEecccee--eEEe-
Confidence            4455567777788888999999999876 555556 999999999999  9999999999 999999987432  3333 


Q ss_pred             cCCCCcccEEEEEEeC-Ce-EEEEecCCeEEEEeCCCCcccccccccCc------------------cc-----------
Q 013717          137 DNDSSSGSVKSVTFCD-GK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPT------------------VN-----------  185 (437)
Q Consensus       137 ~~~~h~~~v~~l~~~~-~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------------~~-----------  185 (437)
                        .+|...|+..-|.. +. +++.+.|+.|++||+++..+......-..                  ..           
T Consensus       146 --~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D  223 (888)
T KOG0306|consen  146 --RGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDD  223 (888)
T ss_pred             --ecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccc
Confidence              68999999999985 44 99999999999999987543221110000                  00           


Q ss_pred             ---------------------cceee--ecCCCCeeEEeeccc-------------------------------------
Q 013717          186 ---------------------DRLLR--FMLPNSYVTVRRHKK-------------------------------------  205 (437)
Q Consensus       186 ---------------------~~~~~--~~~~~~~~~~~~~~~-------------------------------------  205 (437)
                                           ++...  ....+.++.+.+..+                                     
T Consensus       224 ~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v  303 (888)
T KOG0306|consen  224 EKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDV  303 (888)
T ss_pred             cccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccch
Confidence                                 00000  000000111100000                                     


Q ss_pred             ---------------------------------------------------------------eeeecCCCcEEEEEeCC
Q 013717          206 ---------------------------------------------------------------KLWIEHGDAVTGLAVNN  222 (437)
Q Consensus       206 ---------------------------------------------------------------~~~~~~~~~v~~~~~~~  222 (437)
                                                                                     -.+.+|...|.+++++.
T Consensus       304 ~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~  383 (888)
T KOG0306|consen  304 EKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS  383 (888)
T ss_pred             hhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec
Confidence                                                                           11257888899999988


Q ss_pred             -CeEEEEECCCcEEEEECCCcceEEE----------------------------------------eecccccEEEEEEe
Q 013717          223 -GLIYSVSWDKSLKIWRASDLRCLES----------------------------------------IKAHEDAVNAVAVS  261 (437)
Q Consensus       223 -~~l~~~~~dg~i~iwd~~~~~~~~~----------------------------------------~~~~~~~v~~~~~~  261 (437)
                       +.++..+..+.+++|+..+.+++++                                        +++|.+.|++++.+
T Consensus       384 d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~  463 (888)
T KOG0306|consen  384 DSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLS  463 (888)
T ss_pred             CceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeec
Confidence             5555555678899999887665543                                        23678899999999


Q ss_pred             cCCe-EEEEeCCCeEEEecCCCCcc----cceee-----EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCcc
Q 013717          262 AGGT-VYTGSADRKIRVWAKPFNEK----RHALI-----ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSAN  331 (437)
Q Consensus       262 ~~~~-l~~~~~dg~v~iwd~~~~~~----~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (437)
                      ||++ +++|+.|.+|++||...-..    +.+.+     +.+ .-...|.|+.+||||++|+++-.|.+|+||-+++.+ 
T Consensus       464 pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK-  541 (888)
T KOG0306|consen  464 PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK-  541 (888)
T ss_pred             CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee-
Confidence            9999 99999999999998642211    10111     112 245789999999999999999999999999997755 


Q ss_pred             ceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEe
Q 013717          332 HMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSG  409 (437)
Q Consensus       332 ~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~  409 (437)
                         +.-.+.||.-+|.|+..+++  +++||+.|..|+||-+.-|.   |.+.+-+|.+.|.++.|.|..     .+++++
T Consensus       542 ---FflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD---CHKS~fAHdDSvm~V~F~P~~-----~~FFt~  610 (888)
T KOG0306|consen  542 ---FFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD---CHKSFFAHDDSVMSVQFLPKT-----HLFFTC  610 (888)
T ss_pred             ---eeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccch---hhhhhhcccCceeEEEEcccc-----eeEEEe
Confidence               66678899999998876654  99999999999999999888   999999999999999999966     489999


Q ss_pred             cCCCcEEEEeecc
Q 013717          410 SLDGEIRAWQVSV  422 (437)
Q Consensus       410 ~~dg~i~iw~~~~  422 (437)
                      |.||.|+-||-+.
T Consensus       611 gKD~kvKqWDg~k  623 (888)
T KOG0306|consen  611 GKDGKVKQWDGEK  623 (888)
T ss_pred             cCcceEEeechhh
Confidence            9999999998554

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=8.9e-35  Score=232.55  Aligned_cols=269  Identities=17%  Similarity=0.282  Sum_probs=236.3

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTF  135 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~  135 (437)
                      ..+.|.|....+++.+.|..|.+|++....+....+ +|.++|..+.|.  ++.+++++.| +|+.||.++|  +..+.+
T Consensus        51 ~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG--~~~rk~  128 (338)
T KOG0265|consen   51 YTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG--KRIRKH  128 (338)
T ss_pred             EEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccc--eeeehh
Confidence            577999999999999999999999998888888888 999999999998  9999999999 9999999995  555555


Q ss_pred             ccCCCCcccEEEEEEeC---CeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717          136 NDNDSSSGSVKSVTFCD---GKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG  212 (437)
Q Consensus       136 ~~~~~h~~~v~~l~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (437)
                         ++|..-|+.+.-..   ..+.+++.||++++||+++....+.+.                               ..
T Consensus       129 ---k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-------------------------------~k  174 (338)
T KOG0265|consen  129 ---KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-------------------------------NK  174 (338)
T ss_pred             ---ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-------------------------------cc
Confidence               67999999998552   228899999999999999876555443                               45


Q ss_pred             CcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCccccee
Q 013717          213 DAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHAL  289 (437)
Q Consensus       213 ~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~  289 (437)
                      .+++++.|..  ..+.+|+-|+.|++||++.......+.+|.+.|+.+..+++|. +.+-+.|.++++||++.-.....+
T Consensus       175 yqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~  254 (338)
T KOG0265|consen  175 YQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRC  254 (338)
T ss_pred             eeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCce
Confidence            6899999987  8999999999999999999999999999999999999999999 999999999999999876666667


Q ss_pred             eEEeeCccc----cEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCC
Q 013717          290 IATLEKHKS----AVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADR  363 (437)
Q Consensus       290 ~~~~~~~~~----~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg  363 (437)
                      +..+.+|..    .....+|+|+++.+-+|+.|..+++||.....    +...+.||.+.|.++.|++.  +|.+++.|.
T Consensus       255 v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~----~lyklpGh~gsvn~~~Fhp~e~iils~~sdk  330 (338)
T KOG0265|consen  255 VKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR----ILYKLPGHYGSVNEVDFHPTEPIILSCSSDK  330 (338)
T ss_pred             EEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccccc----EEEEcCCcceeEEEeeecCCCcEEEEeccCc
Confidence            777776543    45678999999999999999999999986543    66678999999999999987  999999999


Q ss_pred             cEEEe
Q 013717          364 TVRIW  368 (437)
Q Consensus       364 ~i~iw  368 (437)
                      +|++=
T Consensus       331 ~i~lg  335 (338)
T KOG0265|consen  331 TIYLG  335 (338)
T ss_pred             eeEee
Confidence            98864

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.1e-35  Score=225.28  Aligned_cols=276  Identities=17%  Similarity=0.297  Sum_probs=227.3

Q ss_pred             eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCe
Q 013717           90 INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCK  163 (437)
Q Consensus        90 ~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~  163 (437)
                      +...++ .|.++|.++.|+  |+|.++++.| +|++|+...+  ..++++   .+|...|..++.+.+.  +++|+.|..
T Consensus         8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg--~liktY---sghG~EVlD~~~s~Dnskf~s~GgDk~   82 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG--ALIKTY---SGHGHEVLDAALSSDNSKFASCGGDKA   82 (307)
T ss_pred             hhceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc--ceeeee---cCCCceeeeccccccccccccCCCCce
Confidence            345566 999999999999  9999999999 9999999884  556665   6899999999987443  999999999


Q ss_pred             EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCC
Q 013717          164 IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASD  241 (437)
Q Consensus       164 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~  241 (437)
                      +.+||+++++..+.+                              .+|.+.|+.+.|+.  ..+++|+.|.++++||.+.
T Consensus        83 v~vwDV~TGkv~Rr~------------------------------rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS  132 (307)
T KOG0316|consen   83 VQVWDVNTGKVDRRF------------------------------RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS  132 (307)
T ss_pred             EEEEEcccCeeeeec------------------------------ccccceeeEEEecCcceEEEeccccceeEEEEccc
Confidence            999999999866554                              47999999999998  8999999999999999976


Q ss_pred             c--ceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC
Q 013717          242 L--RCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR  319 (437)
Q Consensus       242 ~--~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  319 (437)
                      .  ++++.+....+.|.++... +-.|++|+.||+++.||++.+.    +..  .-...+|+++.|++|++..++++.|+
T Consensus       133 ~s~ePiQildea~D~V~Si~v~-~heIvaGS~DGtvRtydiR~G~----l~s--Dy~g~pit~vs~s~d~nc~La~~l~s  205 (307)
T KOG0316|consen  133 RSFEPIQILDEAKDGVSSIDVA-EHEIVAGSVDGTVRTYDIRKGT----LSS--DYFGHPITSVSFSKDGNCSLASSLDS  205 (307)
T ss_pred             CCCCccchhhhhcCceeEEEec-ccEEEeeccCCcEEEEEeecce----eeh--hhcCCcceeEEecCCCCEEEEeeccc
Confidence            4  6788888888899999885 3349999999999999998654    222  22457899999999999999999999


Q ss_pred             cEEEEECCCCccceEEeeeecccccce----EEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCC-eeEEEE
Q 013717          320 SILVWDREDSANHMVVTGALRGHGKAI----LCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKP-VKSLTA  394 (437)
Q Consensus       320 ~i~i~d~~~~~~~~~~~~~~~~~~~~i----~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~-v~~l~~  394 (437)
                      ++++.|-.+++    +...+.+|...-    .|+.-+...+++|++||.|++||+....   .+..+..|... |+++++
T Consensus       206 tlrLlDk~tGk----lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~---~~sk~~~~~~v~v~dl~~  278 (307)
T KOG0316|consen  206 TLRLLDKETGK----LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET---QISKLSVVSTVIVTDLSC  278 (307)
T ss_pred             eeeecccchhH----HHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce---eeeeeccCCceeEEeeec
Confidence            99999999887    555566665543    3333445599999999999999999876   77788878777 899999


Q ss_pred             EccCCCCceEEEEEecCCCcEEEEee
Q 013717          395 VTEEGQNGVVSVFSGSLDGEIRAWQV  420 (437)
Q Consensus       395 ~~~~~~~~~~~l~s~~~dg~i~iw~~  420 (437)
                      +|....     |+++. ++.+.+|.-
T Consensus       279 hp~~~~-----f~~A~-~~~~~~~~~  298 (307)
T KOG0316|consen  279 HPTMDD-----FITAT-GHGDLFWYQ  298 (307)
T ss_pred             ccCccc-----eeEec-CCceeceee
Confidence            998864     55554 345666643

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=9.6e-34  Score=249.23  Aligned_cols=275  Identities=33%  Similarity=0.563  Sum_probs=229.1

Q ss_pred             ec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEE
Q 013717           94 QL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVW  167 (437)
Q Consensus        94 ~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw  167 (437)
                      .+ +|.++|.+++|+  +++|++++.+ .|++|++.++.  ....+   ..|...+..+.|.++.  +++++.||.|++|
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~--~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~   78 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE--LLRTL---KGHTGPVRDVAASADGTYLASGSSDKTIRLW   78 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC--cEEEE---ecCCcceeEEEECCCCCEEEEEcCCCeEEEE
Confidence            45 899999999999  6999999988 99999998853  22232   4688899999999664  9999999999999


Q ss_pred             eCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceE
Q 013717          168 QLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCL  245 (437)
Q Consensus       168 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~  245 (437)
                      ++.+++....+                              ..|...+.++.+.+  .++++++.||.|++||+.+++..
T Consensus        79 ~~~~~~~~~~~------------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  128 (289)
T cd00200          79 DLETGECVRTL------------------------------TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL  128 (289)
T ss_pred             EcCcccceEEE------------------------------eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEE
Confidence            99876432222                              35778999999998  67777777999999999989888


Q ss_pred             EEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 013717          246 ESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVW  324 (437)
Q Consensus       246 ~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  324 (437)
                      ..+..|...+.+++|+|++. +++++.+|.|++||++..    +....+..|...+.++.|+|+++.+++++.|+.|++|
T Consensus       129 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~  204 (289)
T cd00200         129 TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG----KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW  204 (289)
T ss_pred             EEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc----ccceeEecCccccceEEECCCcCEEEEecCCCcEEEE
Confidence            88888999999999999887 666666999999998643    3456666788899999999999999999999999999


Q ss_pred             ECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCc
Q 013717          325 DREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNG  402 (437)
Q Consensus       325 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~  402 (437)
                      |++.++    ....+..|...+.++.++++  ++++++.||.|++||+..++   ....+..|...|.+++|++++.   
T Consensus       205 d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~---  274 (289)
T cd00200         205 DLSTGK----CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE---CVQTLSGHTNSVTSLAWSPDGK---  274 (289)
T ss_pred             ECCCCc----eecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce---eEEEccccCCcEEEEEECCCCC---
Confidence            998754    33344567778988888873  77777779999999998755   6777778999999999999864   


Q ss_pred             eEEEEEecCCCcEEEEe
Q 013717          403 VVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       403 ~~~l~s~~~dg~i~iw~  419 (437)
                        +|++++.||.|++|+
T Consensus       275 --~l~~~~~d~~i~iw~  289 (289)
T cd00200         275 --RLASGSADGTIRIWD  289 (289)
T ss_pred             --EEEEecCCCeEEecC
Confidence              799999999999996

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.5e-35  Score=242.46  Aligned_cols=239  Identities=23%  Similarity=0.398  Sum_probs=214.8

Q ss_pred             CCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717          139 DSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT  216 (437)
Q Consensus       139 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  216 (437)
                      .+|.+.|.|+++.|..  |++|+.|++|+|||+.+++....+.                              +|...|.
T Consensus       148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt------------------------------Ghi~~vr  197 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT------------------------------GHIETVR  197 (460)
T ss_pred             hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec------------------------------chhheee
Confidence            7899999999999765  9999999999999999998655443                              7999999


Q ss_pred             EEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEe
Q 013717          217 GLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATL  293 (437)
Q Consensus       217 ~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~  293 (437)
                      .+++++  .|+++++.|+.|+.||++..+.++.+.+|-..|.|++.+|.-. |++|+.|..+++||+++..    .+..+
T Consensus       198 ~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~----~V~~l  273 (460)
T KOG0285|consen  198 GVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA----SVHVL  273 (460)
T ss_pred             eeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc----eEEEe
Confidence            999998  9999999999999999999999999999999999999999887 9999999999999998764    67889


Q ss_pred             eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCC
Q 013717          294 EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRG  371 (437)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~  371 (437)
                      .+|..+|..+.+.|-...+++|+.|++|++||++.++...    .+..|...+.+++.++.  .+|+++.|. |+-|++.
T Consensus       274 ~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~----tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p  348 (460)
T KOG0285|consen  274 SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMI----TLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLP  348 (460)
T ss_pred             cCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeE----eeecccceeeEEecCCchhhhhccCCcc-ceeccCC
Confidence            9999999999999988899999999999999999887443    34568889999888876  677777774 9999999


Q ss_pred             CCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          372 SDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       372 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      .+.   .+..+.+|..-|++++...++      ++++|+++|.+.+||-+++-.
T Consensus       349 ~g~---f~~nlsgh~~iintl~~nsD~------v~~~G~dng~~~fwdwksg~n  393 (460)
T KOG0285|consen  349 EGE---FLQNLSGHNAIINTLSVNSDG------VLVSGGDNGSIMFWDWKSGHN  393 (460)
T ss_pred             ccc---hhhccccccceeeeeeeccCc------eEEEcCCceEEEEEecCcCcc
Confidence            877   667799999999999999888      899999999999999988754

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.4e-34  Score=226.86  Aligned_cols=272  Identities=21%  Similarity=0.350  Sum_probs=228.0

Q ss_pred             cceeeccc-cccccccCCCceeEEecCCC--cceeeeec--CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceee
Q 013717           60 LSLQTLPS-VPSLQKLSPDETINFSSASH--LCINSVQL--GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTS  131 (437)
Q Consensus        60 ~~~~~~~~-~~~~~s~s~dg~i~~~~~~~--~~~~~~~~--~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~  131 (437)
                      .++..+|. ...+++.+.|..|++|+...  ...+...+  +|+..|.++||+  |++||+|+-| ++.||.-..+++++
T Consensus        18 W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efec   97 (312)
T KOG0645|consen   18 WSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFEC   97 (312)
T ss_pred             EEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeE
Confidence            45677777 67899999999999999973  46777777  999999999998  9999999999 99999999988888


Q ss_pred             eeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717          132 INTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI  209 (437)
Q Consensus       132 ~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (437)
                      +..+   ++|...|.|++|+.++  |++++.|..|-||.+..+.......                           ++.
T Consensus        98 v~~l---EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~a---------------------------VL~  147 (312)
T KOG0645|consen   98 VATL---EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIA---------------------------VLQ  147 (312)
T ss_pred             Eeee---eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEe---------------------------eec
Confidence            8887   8999999999999554  9999999999999998665444433                           335


Q ss_pred             cCCCcEEEEEeCC--CeEEEEECCCcEEEEECC---CcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCC
Q 013717          210 EHGDAVTGLAVNN--GLIYSVSWDKSLKIWRAS---DLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFN  283 (437)
Q Consensus       210 ~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~  283 (437)
                      +|...|..+.|+|  .+|++++.|++|++|+-.   ..++++++.+|...|.+++|++.|. +++++.|++++||.....
T Consensus       148 ~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~  227 (312)
T KOG0645|consen  148 EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD  227 (312)
T ss_pred             cccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC
Confidence            7999999999999  999999999999999866   3478999999999999999999996 999999999999954321


Q ss_pred             cccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCc--cc-eEEeeeecccccceEEEEeeCC---EEE
Q 013717          284 EKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSA--NH-MVVTGALRGHGKAILCLINVAG---LLM  357 (437)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~-~~~~~~~~~~~~~i~~~~~~~~---~l~  357 (437)
                      -        -..|..+++.+.|.  ...|++++.|+.|++|.-....  .. ..+......|...|+++.+++.   +|+
T Consensus       228 ~--------~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~  297 (312)
T KOG0645|consen  228 L--------SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLA  297 (312)
T ss_pred             c--------chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCcee
Confidence            1        12367889999998  4489999999999999876421  11 1122244678899999999973   999


Q ss_pred             EEeCCCcEEEeeCC
Q 013717          358 SGSADRTVRIWQRG  371 (437)
Q Consensus       358 ~~~~dg~i~iwd~~  371 (437)
                      +|+.||.|++|.+.
T Consensus       298 s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  298 SGGDDGIVNFWELE  311 (312)
T ss_pred             ecCCCceEEEEEec
Confidence            99999999999875

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.5e-36  Score=250.92  Aligned_cols=271  Identities=21%  Similarity=0.360  Sum_probs=229.8

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccc
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFN  136 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~  136 (437)
                      ..+.-.|....+.+++..|.+.+|+.....-......|..+|+++.|+  +.++++|+.+ .|++|+.+-..   ++.+.
T Consensus       100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn---Vk~~~  176 (464)
T KOG0284|consen  100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN---VKIIQ  176 (464)
T ss_pred             eeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh---hHHhh
Confidence            567889999999999999999999985432222222999999999999  9999999999 99999987632   33321


Q ss_pred             cCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCc
Q 013717          137 DNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA  214 (437)
Q Consensus       137 ~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (437)
                        ..|...|++++|+|+-  +++++.||+|+|||....+....+                              .+|.-.
T Consensus       177 --ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL------------------------------~GHgwd  224 (464)
T KOG0284|consen  177 --AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL------------------------------RGHGWD  224 (464)
T ss_pred             --HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee------------------------------ccCCCC
Confidence              2366999999999643  999999999999998866543333                              479999


Q ss_pred             EEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeE
Q 013717          215 VTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIA  291 (437)
Q Consensus       215 v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~  291 (437)
                      |.++.|+|  .++++|+.|..|++||.++++++.++..|+..|..+.|++++. |++++.|..+++||++.-    +.+.
T Consensus       225 VksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m----kEl~  300 (464)
T KOG0284|consen  225 VKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM----KELF  300 (464)
T ss_pred             cceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh----HHHH
Confidence            99999999  9999999999999999999999999999999999999999999 999999999999998733    4677


Q ss_pred             EeeCccccEEEEEEcc-CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEe
Q 013717          292 TLEKHKSAVNALALSD-DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIW  368 (437)
Q Consensus       292 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iw  368 (437)
                      .+++|...++++.|+| ...+|.+|+.||.|..|.+...+.   +.....+|...|.++++++-  +|++|+.|.++++|
T Consensus       301 ~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p---~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw  377 (464)
T KOG0284|consen  301 TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP---LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFW  377 (464)
T ss_pred             HhhcchhhheeeccccccccceeeccCCCceEEEecccccc---ccCCCcccccceeeeeccccceeEeecCCCcceeee
Confidence            8889999999999999 556899999999999999874332   22334679999999999864  99999999999999


Q ss_pred             eCCC
Q 013717          369 QRGS  372 (437)
Q Consensus       369 d~~~  372 (437)
                      .-..
T Consensus       378 ~r~r  381 (464)
T KOG0284|consen  378 TRNR  381 (464)
T ss_pred             ccCC
Confidence            7554

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.3e-33  Score=251.93  Aligned_cols=318  Identities=18%  Similarity=0.254  Sum_probs=255.9

Q ss_pred             ceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC--eEEEEeCCCCceeeeecc
Q 013717           61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH--EINVYDRTGTTWTSINTF  135 (437)
Q Consensus        61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d--~v~vwd~~~~~~~~~~~~  135 (437)
                      ...|++....+++.-.+|...++.+.. ..+++.+ --..+|..++|+  |++||.|+..  .+.||++++..  .+...
T Consensus       270 aa~fH~~t~~lvvgFssG~f~LyelP~-f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs--YVlKQ  346 (893)
T KOG0291|consen  270 AAAFHKGTNLLVVGFSSGEFGLYELPD-FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES--YVLKQ  346 (893)
T ss_pred             eeeccCCceEEEEEecCCeeEEEecCC-ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc--eeeec
Confidence            558899999999999999999988865 5666777 566889999999  9999999988  99999998842  22222


Q ss_pred             ccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717          136 NDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD  213 (437)
Q Consensus       136 ~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (437)
                         ++|...+++++++||+  +++|+.||+|++||..++-+...+                              ..|..
T Consensus       347 ---QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF------------------------------teHts  393 (893)
T KOG0291|consen  347 ---QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF------------------------------TEHTS  393 (893)
T ss_pred             ---cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe------------------------------ccCCC
Confidence               6899999999999885  999999999999999987544333                              36999


Q ss_pred             cEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeec-ccccEEEEEEecCCe-EEEEeCC-CeEEEecCCCCcccce
Q 013717          214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKA-HEDAVNAVAVSAGGT-VYTGSAD-RKIRVWAKPFNEKRHA  288 (437)
Q Consensus       214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~-l~~~~~d-g~v~iwd~~~~~~~~~  288 (437)
                      .|+.+.|..  +.+++.+-||+|+.||+...+..+++.. ..-...|++..|.|. +.+|+.| -.|.+|++.++    +
T Consensus       394 ~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG----q  469 (893)
T KOG0291|consen  394 GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG----Q  469 (893)
T ss_pred             ceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC----e
Confidence            999999987  8999999999999999999999888873 345678899999999 5555555 35999977655    5


Q ss_pred             eeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeCCCcEE
Q 013717          289 LIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVR  366 (437)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~  366 (437)
                      ++..+.+|+++|.+++|+|+|..|++++.|.+|++||+-.........    .+...++.+++.  |..|++++-||.|.
T Consensus       470 llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl----~i~sdvl~vsfrPdG~elaVaTldgqIt  545 (893)
T KOG0291|consen  470 LLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL----EIRSDVLAVSFRPDGKELAVATLDGQIT  545 (893)
T ss_pred             eeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE----eeccceeEEEEcCCCCeEEEEEecceEE
Confidence            888999999999999999999999999999999999996543222221    234555666655  66999999999999


Q ss_pred             EeeCCCCCCeee-----------------eeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCC
Q 013717          367 IWQRGSDGRFGC-----------------LAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNS  427 (437)
Q Consensus       367 iwd~~~~~~~~~-----------------~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  427 (437)
                      +||.+.+.+...                 ...-.+.....+.|++++|+.     ++++||....|++|++.++-...
T Consensus       546 f~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~-----~IlAgG~sn~iCiY~v~~~vllk  618 (893)
T KOG0291|consen  546 FFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGK-----CILAGGESNSICIYDVPEGVLLK  618 (893)
T ss_pred             EEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCC-----EEEecCCcccEEEEECchhheee
Confidence            999876542110                 011112345799999999995     89999999999999999876543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=5.8e-34  Score=261.24  Aligned_cols=278  Identities=26%  Similarity=0.457  Sum_probs=246.6

Q ss_pred             CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeec-cccCCCCcccEEEEEEe--CCeEEEEecCCeEEEEeCCC
Q 013717           96 GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINT-FNDNDSSSGSVKSVTFC--DGKIFTAHQDCKIRVWQLTP  171 (437)
Q Consensus        96 ~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~-~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~  171 (437)
                      .|...+.|..+.++++++++.+ +|++||...+  ..+.. +   .+|.+.|.++++.  .+.+++|+.|.++++||..+
T Consensus       206 ~~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~--~~i~~~l---~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s  280 (537)
T KOG0274|consen  206 TDDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNG--YLILTRL---VGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST  280 (537)
T ss_pred             cCcchhhhheeecCeEEecCCCceeEEeecccc--eEEEeec---cCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence            3678899999999999999999 9999999985  33333 4   7899999999999  66799999999999999999


Q ss_pred             CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEeecc
Q 013717          172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAH  251 (437)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  251 (437)
                      +++...+                              .+|...|.++...+..+++|+.|.+|++|+++++.++..+.+|
T Consensus       281 g~C~~~l------------------------------~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h  330 (537)
T KOG0274|consen  281 GECTHSL------------------------------QGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGH  330 (537)
T ss_pred             CcEEEEe------------------------------cCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccc
Confidence            9865544                              4799999999999999999999999999999999999999999


Q ss_pred             cccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCcc
Q 013717          252 EDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSAN  331 (437)
Q Consensus       252 ~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (437)
                      .++|.++.++ .+.+++|+.|+.|++||+.    ..+++..+.+|...|.++.+.+. .++++|+.|++|++||+++.. 
T Consensus       331 ~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~----~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~-  403 (537)
T KOG0274|consen  331 TGPVNCVQLD-EPLLVSGSYDGTVKVWDPR----TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR-  403 (537)
T ss_pred             cccEEEEEec-CCEEEEEecCceEEEEEhh----hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh-
Confidence            9999999998 5559999999999999876    44699999999999999988765 799999999999999998872 


Q ss_pred             ceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecC-CCCCeeEEEEEccCCCCceEEEEEec
Q 013717          332 HMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEG-HTKPVKSLTAVTEEGQNGVVSVFSGS  410 (437)
Q Consensus       332 ~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~l~s~~  410 (437)
                        .....+.+|...+..+...+++|++++.|++|++||..+++   ++.++.+ |.+.|..+++...       .+++++
T Consensus       404 --~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~---~~~~~~~~~~~~v~~l~~~~~-------~il~s~  471 (537)
T KOG0274|consen  404 --KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGE---CLRTLEGRHVGGVSALALGKE-------EILCSS  471 (537)
T ss_pred             --hhhhhhcCCcccccccccccceeEeccccccEEEeecccCc---eeeeeccCCcccEEEeecCcc-------eEEEEe
Confidence              25556788999999999999999999999999999999887   8888888 7789999888721       699999


Q ss_pred             CCCcEEEEeeccCCCCC
Q 013717          411 LDGEIRAWQVSVSCPNS  427 (437)
Q Consensus       411 ~dg~i~iw~~~~~~~~~  427 (437)
                      .||.+++||+++++...
T Consensus       472 ~~~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  472 DDGSVKLWDLRSGTLIR  488 (537)
T ss_pred             cCCeeEEEecccCchhh
Confidence            99999999999988755

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3e-34  Score=257.84  Aligned_cols=231  Identities=23%  Similarity=0.377  Sum_probs=204.6

Q ss_pred             cceeeccccccccccCCCceeEEecCCCc------------------------------ceeeeec-CccCCeEEEEee-
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHL------------------------------CINSVQL-GHKLPIGCIAVH-  107 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~------------------------------~~~~~~~-~h~~~V~~l~~~-  107 (437)
                      ....|.+....++.+-.|..|++|++.+.                              .....++ ||.++|..+.|+ 
T Consensus       382 ~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP  461 (707)
T KOG0263|consen  382 TCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP  461 (707)
T ss_pred             eeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecc
Confidence            35677788888888888999999998731                              1233446 999999999999 


Q ss_pred             -CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCc
Q 013717          108 -HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPT  183 (437)
Q Consensus       108 -~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  183 (437)
                       .++|+++++| +||+|.+.+  +..+-.+   .+|..+|..+.|+|.+  ++|++.|++-++|.....+..+       
T Consensus       462 d~rfLlScSED~svRLWsl~t--~s~~V~y---~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlR-------  529 (707)
T KOG0263|consen  462 DRRFLLSCSEDSSVRLWSLDT--WSCLVIY---KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLR-------  529 (707)
T ss_pred             cccceeeccCCcceeeeeccc--ceeEEEe---cCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchh-------
Confidence             8999999999 999999999  5555555   6899999999999876  9999999999999988755433       


Q ss_pred             cccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEe
Q 013717          184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVS  261 (437)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  261 (437)
                                             ++.+|-..|.|+.|+|  +++++|+.|.+|++||+.+|..++.+.+|.++|.+++|+
T Consensus       530 -----------------------ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~S  586 (707)
T KOG0263|consen  530 -----------------------IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFS  586 (707)
T ss_pred             -----------------------hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEc
Confidence                                   4458999999999999  999999999999999999999999999999999999999


Q ss_pred             cCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 013717          262 AGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDS  329 (437)
Q Consensus       262 ~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (437)
                      |+|+ |++|+.||.|.+||+..+.    .+..+.+|.+.|.++.|+.||..|++|+.|.+|++||+...
T Consensus       587 p~Gr~LaSg~ed~~I~iWDl~~~~----~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  587 PCGRYLASGDEDGLIKIWDLANGS----LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             CCCceEeecccCCcEEEEEcCCCc----chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            9999 9999999999999998654    67788899999999999999999999999999999999754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=6.1e-33  Score=274.72  Aligned_cols=300  Identities=16%  Similarity=0.254  Sum_probs=228.1

Q ss_pred             CceeEEecCCCcceee----eec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCce--e----eeeccccCCCCc
Q 013717           77 DETINFSSASHLCINS----VQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTW--T----SINTFNDNDSSS  142 (437)
Q Consensus        77 dg~i~~~~~~~~~~~~----~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~--~----~~~~~~~~~~h~  142 (437)
                      +|...+|+........    ..+ +|...|.+++|+  +++||+|+.| .|+|||......  .    ....+    .+.
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~----~~~  532 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL----ASR  532 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe----ccc
Confidence            4455556554322211    112 699999999999  8999999999 999999864210  0    11111    245


Q ss_pred             ccEEEEEEeCC---eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEE
Q 013717          143 GSVKSVTFCDG---KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA  219 (437)
Q Consensus       143 ~~v~~l~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  219 (437)
                      ..|.+++|++.   .|++++.||+|++||+.+++....+                              .+|...|++++
T Consensus       533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~------------------------------~~H~~~V~~l~  582 (793)
T PLN00181        533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM------------------------------KEHEKRVWSID  582 (793)
T ss_pred             CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe------------------------------cCCCCCEEEEE
Confidence            68999999842   3999999999999999877543322                              36999999999


Q ss_pred             eCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEec-CCe-EEEEeCCCeEEEecCCCCcccceeeEEee
Q 013717          220 VNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA-GGT-VYTGSADRKIRVWAKPFNEKRHALIATLE  294 (437)
Q Consensus       220 ~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  294 (437)
                      |++   .+|++|+.||.|++||+.+++.+..+.. ...|.++.|++ ++. +++|+.||.|++||++...   ..+..+.
T Consensus       583 ~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~---~~~~~~~  658 (793)
T PLN00181        583 YSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK---LPLCTMI  658 (793)
T ss_pred             EcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC---ccceEec
Confidence            985   6899999999999999999998888874 46799999964 566 9999999999999987543   2345667


Q ss_pred             CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCcc--ceEEeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeC
Q 013717          295 KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSAN--HMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQR  370 (437)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~  370 (437)
                      +|...|.++.|. ++.+|++++.|++|++||++....  .......+.+|...+.++.++  +.+|++|+.|+.|++|+.
T Consensus       659 ~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~  737 (793)
T PLN00181        659 GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHK  737 (793)
T ss_pred             CCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence            899999999997 788999999999999999975321  112344577888877776665  559999999999999998


Q ss_pred             CCCCCee--------ee--eeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEee
Q 013717          371 GSDGRFG--------CL--AVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV  420 (437)
Q Consensus       371 ~~~~~~~--------~~--~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~  420 (437)
                      .......        .+  .....|...|.+++|++++.     +|++|+.||.|++|++
T Consensus       738 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~-----~lva~~~dG~I~i~~~  792 (793)
T PLN00181        738 AFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS-----TLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCC-----eEEEecCCCcEEEEec
Confidence            6543110        00  11234566799999999885     7999999999999996

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.2e-33  Score=249.37  Aligned_cols=294  Identities=20%  Similarity=0.362  Sum_probs=243.1

Q ss_pred             CCCceeEEecCCCccee--------eeec-CccCCeEEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcc
Q 013717           75 SPDETINFSSASHLCIN--------SVQL-GHKLPIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSG  143 (437)
Q Consensus        75 s~dg~i~~~~~~~~~~~--------~~~~-~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~  143 (437)
                      -.+.++.++.++.....        ...+ ||...|.+++++  ...+++|+.+.+++|+..+  .++++++     ..+
T Consensus       341 l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t--~kciRTi-----~~~  413 (888)
T KOG0306|consen  341 LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDT--LKCIRTI-----TCG  413 (888)
T ss_pred             eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccC--cceeEEe-----ccc
Confidence            44566776666442222        1233 999999999999  4455555556999999998  6788887     345


Q ss_pred             cEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717          144 SVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN  221 (437)
Q Consensus       144 ~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  221 (437)
                      .+.+..|.|+.  ++.|...|.+.++|+.+......+.                              .|.+.|+.++..
T Consensus       414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~------------------------------AHdgaIWsi~~~  463 (888)
T KOG0306|consen  414 YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR------------------------------AHDGAIWSISLS  463 (888)
T ss_pred             cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh------------------------------ccccceeeeeec
Confidence            88888898654  9999999999999999887655544                              499999999998


Q ss_pred             C--CeEEEEECCCcEEEEECCC-----cc--e-E-----EEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcc
Q 013717          222 N--GLIYSVSWDKSLKIWRASD-----LR--C-L-----ESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEK  285 (437)
Q Consensus       222 ~--~~l~~~~~dg~i~iwd~~~-----~~--~-~-----~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~  285 (437)
                      |  ..+++|+.|.+|++||..-     +.  . +     .++ .....|.|+.++||++ ++++--|.+|++|-+++   
T Consensus       464 pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt---  539 (888)
T KOG0306|consen  464 PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT---  539 (888)
T ss_pred             CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecc---
Confidence            8  8999999999999999731     11  1 1     122 3467899999999999 88899999999996643   


Q ss_pred             cceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCC
Q 013717          286 RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADR  363 (437)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg  363 (437)
                       .+....+.+|.-+|.||..+||++++++|+.|.+|+||-+.-|.    +...+.+|...|+++.|-|+  .+++++.|+
T Consensus       540 -lKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD----CHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~  614 (888)
T KOG0306|consen  540 -LKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD----CHKSFFAHDDSVMSVQFLPKTHLFFTCGKDG  614 (888)
T ss_pred             -eeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccch----hhhhhhcccCceeEEEEcccceeEEEecCcc
Confidence             35777889999999999999999999999999999999998877    44556789999999999887  899999999


Q ss_pred             cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717          364 TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       364 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                      .|+-||-..   +.++..+.+|...|++++.+|+|+     +++++|.|.+||+|.-..
T Consensus       615 kvKqWDg~k---Fe~iq~L~~H~~ev~cLav~~~G~-----~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  615 KVKQWDGEK---FEEIQKLDGHHSEVWCLAVSPNGS-----FVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             eEEeechhh---hhhheeeccchheeeeeEEcCCCC-----eEEeccCCceeEeeeccC
Confidence            999999775   459999999999999999999985     899999999999998665

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-33  Score=254.13  Aligned_cols=319  Identities=21%  Similarity=0.306  Sum_probs=245.0

Q ss_pred             cccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeee
Q 013717           58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSIN  133 (437)
Q Consensus        58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~  133 (437)
                      ...+++|+|+.+.+.+.-.+|.|.+||..- ..++..| +|.++|..++|+  +.++++|++| .|+||+.+.  .+++.
T Consensus        11 RvKglsFHP~rPwILtslHsG~IQlWDYRM-~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~--rrclf   87 (1202)
T KOG0292|consen   11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRM-GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT--RRCLF   87 (1202)
T ss_pred             cccceecCCCCCEEEEeecCceeeeehhhh-hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc--ceehh
Confidence            346789999999999999999999999876 4556666 999999999999  8999999999 999999998  56666


Q ss_pred             ccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717          134 TFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH  211 (437)
Q Consensus       134 ~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (437)
                      ++   .+|-..|..+.|++..  +++++.|.+|+||+..+++++..+.                              ||
T Consensus        88 tL---~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt------------------------------GH  134 (1202)
T KOG0292|consen   88 TL---LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT------------------------------GH  134 (1202)
T ss_pred             hh---ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe------------------------------cC
Confidence            66   7999999999999887  9999999999999999987665554                              89


Q ss_pred             CCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc-----------------------------eEEEeecccccEEEEEE
Q 013717          212 GDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR-----------------------------CLESIKAHEDAVNAVAV  260 (437)
Q Consensus       212 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~v~~~~~  260 (437)
                      ...|.|..|+|  ..+++++-|.+||+||+...+                             ..+.+.+|...|+-++|
T Consensus       135 nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf  214 (1202)
T KOG0292|consen  135 NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF  214 (1202)
T ss_pred             ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe
Confidence            99999999999  999999999999999985311                             12345689999999999


Q ss_pred             ecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeee
Q 013717          261 SAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGAL  339 (437)
Q Consensus       261 ~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  339 (437)
                      +|.-. +++|+.|..|++|.+..  ...-.+.+.++|.+.|.++-|+|...++++.++|++|+|||+...+....+    
T Consensus       215 hpTlpliVSG~DDRqVKlWrmne--tKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf----  288 (1202)
T KOG0292|consen  215 HPTLPLIVSGADDRQVKLWRMNE--TKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF----  288 (1202)
T ss_pred             cCCcceEEecCCcceeeEEEecc--ccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee----
Confidence            99888 99999999999998752  222345677899999999999999999999999999999999765544333    


Q ss_pred             cccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCC--------------------------eeeeeeecCC---CCC
Q 013717          340 RGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGR--------------------------FGCLAVLEGH---TKP  388 (437)
Q Consensus       340 ~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~--------------------------~~~~~~~~~h---~~~  388 (437)
                      +......+.++.+|.  ++++|. |+-+.+|.++...+                          -..+..++.-   ..+
T Consensus       289 rrendRFW~laahP~lNLfAAgH-DsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~  367 (1202)
T KOG0292|consen  289 RRENDRFWILAAHPELNLFAAGH-DSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQP  367 (1202)
T ss_pred             eccCCeEEEEEecCCcceeeeec-CCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCC
Confidence            223344445554433  444443 33344554442211                          0122222222   367


Q ss_pred             eeEEEEEccCCCCceEEEEEecCC-CcEEEEeeccC
Q 013717          389 VKSLTAVTEEGQNGVVSVFSGSLD-GEIRAWQVSVS  423 (437)
Q Consensus       389 v~~l~~~~~~~~~~~~~l~s~~~d-g~i~iw~~~~~  423 (437)
                      +.++.++|..+-    .+++...| |.--++.+...
T Consensus       368 ~~smsYNpae~~----vlics~~~n~~y~L~~ipk~  399 (1202)
T KOG0292|consen  368 PRSLSYNPAENA----VLICSNLDNGEYELVQIPKD  399 (1202)
T ss_pred             cceeeeccccCe----EEEEeccCCCeEEEEEecCc
Confidence            888999998764    55554444 45556665543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2.5e-33  Score=231.15  Aligned_cols=291  Identities=20%  Similarity=0.302  Sum_probs=226.3

Q ss_pred             cccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--C---CEEEEEecC-eEEEEeCCCCceeeeeccccCCC
Q 013717           68 VPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--H---NFLYAASSH-EINVYDRTGTTWTSINTFNDNDS  140 (437)
Q Consensus        68 ~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~---~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~  140 (437)
                      ...+++.++||.+++|+...  ++..++ ||.++|.++++.  .   ..+++++.| ++++|.++.++.. ........|
T Consensus       115 ~~~IltgsYDg~~riWd~~G--k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~-~~~~~~~~G  191 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDLKG--KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK-VKALKVCRG  191 (423)
T ss_pred             CceEEEeecCCeeEEEecCC--ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh-hhHHhHhcc
Confidence            67899999999999999864  455666 999999999986  3   459999999 9999999876432 222222358


Q ss_pred             CcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717          141 SSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL  218 (437)
Q Consensus       141 h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  218 (437)
                      |...|.++...++.  +++|+.|.+|++|+...... ..+........    -........-.+.....+.+|..+|.++
T Consensus       192 Hk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~-~~~E~~s~~rr----k~~~~~~~~~~r~P~vtl~GHt~~Vs~V  266 (423)
T KOG0313|consen  192 HKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEE-DELESSSNRRR----KKQKREKEGGTRTPLVTLEGHTEPVSSV  266 (423)
T ss_pred             cccceeEEEecCCCCeEEeecccceeeecccCCCcc-ccccccchhhh----hhhhhhhcccccCceEEecccccceeeE
Confidence            99999999988554  99999999999999432211 11110000000    0000001111223345668999999999


Q ss_pred             EeCC-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCc
Q 013717          219 AVNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKH  296 (437)
Q Consensus       219 ~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  296 (437)
                      .|.+ ..+++++.|.+|+.||+.++..+.++. ....++++.++|... |++|+.|..+++||.+.+ ........+.+|
T Consensus       267 ~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~-~gs~v~~s~~gH  344 (423)
T KOG0313|consen  267 VWSDATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG-DGSVVSQSLIGH  344 (423)
T ss_pred             EEcCCCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCC-CCceeEEeeecc
Confidence            9998 999999999999999999999998887 456799999999888 999999999999999866 334456788899


Q ss_pred             cccEEEEEEccC-CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCC
Q 013717          297 KSAVNALALSDD-GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRG  371 (437)
Q Consensus       297 ~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~  371 (437)
                      .+.|.++.|+|. ..+|++|+.|+++++||+++.+.   ....+.+|...|.++.|... +|++|+.|.+|+|+.-.
T Consensus       345 ~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~---plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  345 KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA---PLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC---cceeeccCCceEEEEeccCCceEEeccCcceEEEeccc
Confidence            999999999995 45788999999999999997653   23346789999999999876 99999999999999754

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3e-33  Score=244.62  Aligned_cols=266  Identities=19%  Similarity=0.342  Sum_probs=229.2

Q ss_pred             ccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeec
Q 013717           59 NLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINT  134 (437)
Q Consensus        59 ~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~  134 (437)
                      ..++.++|..+.+...-++|++.+|+.+. ...+..+ -..-+|.+..|-  .+++++|++| .|+||+.++  .+.+..
T Consensus        16 VKsVd~HPtePw~la~LynG~V~IWnyet-qtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt--~ekV~~   92 (794)
T KOG0276|consen   16 VKSVDFHPTEPWILAALYNGDVQIWNYET-QTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT--GEKVKT   92 (794)
T ss_pred             eeeeecCCCCceEEEeeecCeeEEEeccc-ceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc--ceeeEE
Confidence            35789999999999999999999999877 4556666 778899999998  8999999999 999999999  577777


Q ss_pred             cccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717          135 FNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG  212 (437)
Q Consensus       135 ~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (437)
                      |   +.|...|++|+.+|..  +++++.|-+|++||.+..-                             ...++|.+|+
T Consensus        93 F---eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w-----------------------------a~~qtfeGH~  140 (794)
T KOG0276|consen   93 F---EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW-----------------------------ACEQTFEGHE  140 (794)
T ss_pred             e---eccccceeeeeecCCCCeEEecCCccEEEEeeccCce-----------------------------eeeeEEcCcc
Confidence            7   7899999999999987  9999999999999998652                             1124556899


Q ss_pred             CcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe---EEEEeCCCeEEEecCCCCccc
Q 013717          213 DAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT---VYTGSADRKIRVWAKPFNEKR  286 (437)
Q Consensus       213 ~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---l~~~~~dg~v~iwd~~~~~~~  286 (437)
                      ..|.+++|+|   +.+++++-|++|++|.+....+..++++|...|+|+.+-+.|.   +++|+.|..|+|||..+.   
T Consensus       141 HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---  217 (794)
T KOG0276|consen  141 HYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---  217 (794)
T ss_pred             eEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---
Confidence            9999999999   8999999999999999999999999999999999999998773   999999999999987654   


Q ss_pred             ceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeCCCc
Q 013717          287 HALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRT  364 (437)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~  364 (437)
                       .+++++++|...|..+.|+|.-..+++|++||+++||+..+-+    +...+.-....+.|++..  .+.++.|..+|.
T Consensus       218 -~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~----lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~  292 (794)
T KOG0276|consen  218 -SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK----LEKTLNYGLERVWCIAAHKGDGKIAVGFDEGS  292 (794)
T ss_pred             -HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCccee----hhhhhhcCCceEEEEeecCCCCeEEEeccCCc
Confidence             4889999999999999999999999999999999999987654    333344456778888754  337777777775


Q ss_pred             EEE
Q 013717          365 VRI  367 (437)
Q Consensus       365 i~i  367 (437)
                      |.+
T Consensus       293 i~v  295 (794)
T KOG0276|consen  293 VTV  295 (794)
T ss_pred             EEE
Confidence            543

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-33  Score=219.75  Aligned_cols=273  Identities=22%  Similarity=0.346  Sum_probs=223.6

Q ss_pred             EEEEee---CCEEEEEe-------cC-eEEEEeCCC-CceeeeeccccCCCCcccEEEEEEeCCe---EEEEecCCeEEE
Q 013717          102 GCIAVH---HNFLYAAS-------SH-EINVYDRTG-TTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRV  166 (437)
Q Consensus       102 ~~l~~~---~~~l~s~~-------~d-~v~vwd~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~i  166 (437)
                      .++.|+   .++||.+.       .+ .+.|.++.. +.......+    .-...+..++|+++.   +++++.||.+++
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~----d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl   87 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY----DTEDGLFDVAWSENHENQVIAASGDGSLRL   87 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee----ecccceeEeeecCCCcceEEEEecCceEEE
Confidence            466777   55555443       23 889999863 333444443    356889999999554   999999999999


Q ss_pred             EeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcc
Q 013717          167 WQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLR  243 (437)
Q Consensus       167 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~  243 (437)
                      ||+.....                             +...++.|..+|.++.+++   ..+++++.|++|++|+....+
T Consensus        88 ~d~~~~s~-----------------------------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   88 FDLTMPSK-----------------------------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN  138 (311)
T ss_pred             eccCCCCc-----------------------------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence            99543321                             1233457999999999998   778888999999999999999


Q ss_pred             eEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEcc-CCCEEEEEeCCCc
Q 013717          244 CLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD-DGTVLFSGACDRS  320 (437)
Q Consensus       244 ~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~  320 (437)
                      .+.++.+|..-|...+|+|.-.  +++++.|+.+++||++...   +.+. +..|...|.++.|+. +.+.+++|+.|+.
T Consensus       139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g---k~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~  214 (311)
T KOG0277|consen  139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG---KFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNL  214 (311)
T ss_pred             ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC---ceeE-EEeccceeEeecccccCCcEEEecCCCce
Confidence            9999999999999999999654  9999999999999987654   3333 778999999999998 6679999999999


Q ss_pred             EEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc
Q 013717          321 ILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE  397 (437)
Q Consensus       321 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~  397 (437)
                      |++||++..+.   ....+.+|.-.|..+.+++.   +|++++.|-++||||...+.  .++.+...|..-|..+.|++-
T Consensus       215 vr~wDir~~r~---pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~g~Dws~~  289 (311)
T KOG0277|consen  215 VRGWDIRNLRT---PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVCGLDWSLF  289 (311)
T ss_pred             EEEEehhhccc---cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhccceEEeccccccc
Confidence            99999987653   34556899999999999876   99999999999999998655  477778889999999999998


Q ss_pred             CCCCceEEEEEecCCCcEEEEee
Q 013717          398 EGQNGVVSVFSGSLDGEIRAWQV  420 (437)
Q Consensus       398 ~~~~~~~~l~s~~~dg~i~iw~~  420 (437)
                      .+.    ++++++.|+.++||+.
T Consensus       290 ~~~----~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  290 DPG----QVASTGWDELLYVWNP  308 (311)
T ss_pred             cCc----eeeecccccceeeecc
Confidence            765    8999999999999984

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.2e-34  Score=247.85  Aligned_cols=241  Identities=27%  Similarity=0.408  Sum_probs=214.2

Q ss_pred             CCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717          139 DSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT  216 (437)
Q Consensus       139 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  216 (437)
                      ..++..|.++.++|..  ++++-.+|.|.|||.++....+.+.                              -...+|.
T Consensus        10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfe------------------------------V~~~PvR   59 (794)
T KOG0276|consen   10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFE------------------------------VSEVPVR   59 (794)
T ss_pred             hccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeee------------------------------ecccchh
Confidence            3588999999999987  8899999999999999876554443                              2456788


Q ss_pred             EEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEe
Q 013717          217 GLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATL  293 (437)
Q Consensus       217 ~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~  293 (437)
                      +..|-.  +.+++|+.|..|+||+..+++.+..+..|.+.|.+++.+|... +++++.|-.|++||.+   ..+.+.+.+
T Consensus        60 a~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we---~~wa~~qtf  136 (794)
T KOG0276|consen   60 AAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE---NEWACEQTF  136 (794)
T ss_pred             hheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeecc---CceeeeeEE
Confidence            888876  9999999999999999999999999999999999999999888 9999999999999965   455788999


Q ss_pred             eCccccEEEEEEcc-CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC----EEEEEeCCCcEEEe
Q 013717          294 EKHKSAVNALALSD-DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG----LLMSGSADRTVRIW  368 (437)
Q Consensus       294 ~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~l~~~~~dg~i~iw  368 (437)
                      ++|...|.+++|.| |.+.+++++.|++|+||.+.+....    .++.+|...|.|+.+-+.    +|++|+.|.+|+||
T Consensus       137 eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n----fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvW  212 (794)
T KOG0276|consen  137 EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN----FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVW  212 (794)
T ss_pred             cCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc----eeeeccccCcceEEeccCCCcceEEecCCCceEEEe
Confidence            99999999999999 6679999999999999999876644    346789999999998633    99999999999999


Q ss_pred             eCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          369 QRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       369 d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      |..+..   |++++.||...|..+.|+|.-+     +++|||+||++|||+-.+-+
T Consensus       213 DyQtk~---CV~TLeGHt~Nvs~v~fhp~lp-----iiisgsEDGTvriWhs~Ty~  260 (794)
T KOG0276|consen  213 DYQTKS---CVQTLEGHTNNVSFVFFHPELP-----IIISGSEDGTVRIWNSKTYK  260 (794)
T ss_pred             ecchHH---HHHHhhcccccceEEEecCCCc-----EEEEecCCccEEEecCccee
Confidence            999876   9999999999999999999986     89999999999999876644

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-32  Score=250.28  Aligned_cols=284  Identities=21%  Similarity=0.374  Sum_probs=242.3

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCC
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLT  170 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~  170 (437)
                      ..+..|..++|+  ..+++++-.. .|++||..-  ...+..|   ..|.++|..++|++.+  +++|+.|-+|++|+..
T Consensus         7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM--~tli~rF---deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk   81 (1202)
T KOG0292|consen    7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM--GTLIDRF---DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK   81 (1202)
T ss_pred             cccccccceecCCCCCEEEEeecCceeeeehhhh--hhHHhhh---hccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence            456788999999  6778888777 999999987  3556666   7899999999999887  9999999999999999


Q ss_pred             CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEe
Q 013717          171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESI  248 (437)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~  248 (437)
                      +.++...+                              .+|-+.|..+.|++  ..+++++.|.+|+||+.++++++..+
T Consensus        82 ~rrclftL------------------------------~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl  131 (1202)
T KOG0292|consen   82 TRRCLFTL------------------------------LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL  131 (1202)
T ss_pred             cceehhhh------------------------------ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE
Confidence            87655443                              37999999999998  99999999999999999999999999


Q ss_pred             ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcc-------------------------cceeeEEeeCccccEEE
Q 013717          249 KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEK-------------------------RHALIATLEKHKSAVNA  302 (437)
Q Consensus       249 ~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~-------------------------~~~~~~~~~~~~~~i~~  302 (437)
                      .+|...|.|..|+|... +++++.|.+|++||+..-..                         .......+++|...|+-
T Consensus       132 tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNw  211 (1202)
T KOG0292|consen  132 TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNW  211 (1202)
T ss_pred             ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccce
Confidence            99999999999999666 99999999999999852110                         11223457899999999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC--CEEEEEeCCCcEEEeeCCCCCCeeeee
Q 013717          303 LALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLLMSGSADRTVRIWQRGSDGRFGCLA  380 (437)
Q Consensus       303 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~  380 (437)
                      ++|+|.-.+|++|+.|..|++|.+...+- + -.....+|...|.++-|++  +++++.++|+.|+|||+....   .+.
T Consensus       212 aAfhpTlpliVSG~DDRqVKlWrmnetKa-W-EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt---~v~  286 (1202)
T KOG0292|consen  212 AAFHPTLPLIVSGADDRQVKLWRMNETKA-W-EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT---SVQ  286 (1202)
T ss_pred             EEecCCcceEEecCCcceeeEEEeccccc-e-eehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc---cee
Confidence            99999999999999999999999875432 2 3345689999999999998  599999999999999999766   788


Q ss_pred             eecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          381 VLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       381 ~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      +++...+.-+.++.+|..+      |++++-|+-+.+|.++-..|
T Consensus       287 tfrrendRFW~laahP~lN------LfAAgHDsGm~VFkleRErp  325 (1202)
T KOG0292|consen  287 TFRRENDRFWILAAHPELN------LFAAGHDSGMIVFKLERERP  325 (1202)
T ss_pred             eeeccCCeEEEEEecCCcc------eeeeecCCceEEEEEcccCc
Confidence            8887788999999999885      77777888888999886654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-33  Score=219.65  Aligned_cols=276  Identities=17%  Similarity=0.264  Sum_probs=219.5

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC--eEEEEecCCeEEEEeCC
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG--KIFTAHQDCKIRVWQLT  170 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~  170 (437)
                      ||..+++.+.|+  |++|++++.| ++.||-...|  +.+.++   .+|++.|.|+..+.+  .+++|+.|.++++||++
T Consensus         8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG--erlGty---~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen    8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG--ERLGTY---DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE   82 (327)
T ss_pred             cCccccceEEecCCCcEEEEecCCCCceEEEecCC--ceeeee---cCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence            999999999999  9999999999 9999988664  456665   799999999999843  49999999999999999


Q ss_pred             CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE-----CCCcEEEEECC---
Q 013717          171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS-----WDKSLKIWRAS---  240 (437)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-----~dg~i~iwd~~---  240 (437)
                      +++.+....                               ...+|..+.|+.  ++++...     ..+.|.++|++   
T Consensus        83 tGk~la~~k-------------------------------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~  131 (327)
T KOG0643|consen   83 TGKQLATWK-------------------------------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS  131 (327)
T ss_pred             CCcEEEEee-------------------------------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence            998766554                               567889999987  4444443     24679999998   


Q ss_pred             ----CcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE
Q 013717          241 ----DLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG  315 (437)
Q Consensus       241 ----~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  315 (437)
                          ..++...+..+...++.+-|.|-++ |++|..||.|..||++++.   +.+...+.|...|+.|++++|..+++++
T Consensus       132 ~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~---~~v~s~~~h~~~Ind~q~s~d~T~FiT~  208 (327)
T KOG0643|consen  132 SDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK---ELVDSDEEHSSKINDLQFSRDRTYFITG  208 (327)
T ss_pred             hhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc---eeeechhhhccccccccccCCcceEEec
Confidence                4456777777889999999999998 9999999999999998765   4666667899999999999999999999


Q ss_pred             eCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCc--------------EEEeeCCCCCCeeee
Q 013717          316 ACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRT--------------VRIWQRGSDGRFGCL  379 (437)
Q Consensus       316 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~--------------i~iwd~~~~~~~~~~  379 (437)
                      +.|.+-++||+++.+....+.     ...++.+.+..+.  .++.|+....              .++|++-..   +.+
T Consensus       209 s~Dttakl~D~~tl~v~Kty~-----te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~e---EEi  280 (327)
T KOG0643|consen  209 SKDTTAKLVDVRTLEVLKTYT-----TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFE---EEI  280 (327)
T ss_pred             ccCccceeeeccceeeEEEee-----ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHH---HHh
Confidence            999999999998765333322     2456666666553  4544443221              122222221   256


Q ss_pred             eeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          380 AVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       380 ~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      ...++|.++|++++|+|++.     ..++|++||.||+.-++..
T Consensus       281 grvkGHFGPINsvAfhPdGk-----sYsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  281 GRVKGHFGPINSVAFHPDGK-----SYSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             ccccccccCcceeEECCCCc-----ccccCCCCceEEEEEeccc
Confidence            78899999999999999995     6999999999999877653

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=1.3e-32  Score=252.33  Aligned_cols=269  Identities=23%  Similarity=0.365  Sum_probs=235.2

Q ss_pred             cccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcc
Q 013717           68 VPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSG  143 (437)
Q Consensus        68 ~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~  143 (437)
                      ...+.+.+.+.+|.+|+......+...+ ||.+.|.++++.  +++|++|+.| +++|||..++  .+...+   .+|..
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg--~C~~~l---~gh~s  292 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG--ECTHSL---QGHTS  292 (537)
T ss_pred             cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC--cEEEEe---cCCCc
Confidence            6678889999999999998877777767 999999999999  9999999999 9999999995  555565   58999


Q ss_pred             cEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCC
Q 013717          144 SVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNG  223 (437)
Q Consensus       144 ~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  223 (437)
                      .|.++...+..+++|+.|.+|++|+++++.....+.                              +|..+|.++..+..
T Consensus       293 tv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~------------------------------~h~~~V~~v~~~~~  342 (537)
T KOG0274|consen  293 SVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLR------------------------------GHTGPVNCVQLDEP  342 (537)
T ss_pred             eEEEEEccCceEeeccCCceEEEEeccCcceEEEec------------------------------cccccEEEEEecCC
Confidence            999999999999999999999999999876554443                              59999999999999


Q ss_pred             eEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEE
Q 013717          224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNAL  303 (437)
Q Consensus       224 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~  303 (437)
                      ++++|+.||+|++||+.+++++..+.+|...|.++.+.+...+++|+.|+.|++||++...   +++..+.+|.+-+..+
T Consensus       343 ~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~---~c~~tl~~h~~~v~~l  419 (537)
T KOG0274|consen  343 LLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKR---KCIHTLQGHTSLVSSL  419 (537)
T ss_pred             EEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchh---hhhhhhcCCccccccc
Confidence            9999999999999999999999999999999999988766559999999999999987653   5788888899888776


Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeee
Q 013717          304 ALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVL  382 (437)
Q Consensus       304 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  382 (437)
                      .+.  +++|++++.|++|++||...+++...+...   |...+.++......+++++.||.+++||++++.   +...+
T Consensus       420 ~~~--~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~---~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~---~~~~l  490 (537)
T KOG0274|consen  420 LLR--DNFLVSSSADGTIKLWDAEEGECLRTLEGR---HVGGVSALALGKEEILCSSDDGSVKLWDLRSGT---LIRTL  490 (537)
T ss_pred             ccc--cceeEeccccccEEEeecccCceeeeeccC---CcccEEEeecCcceEEEEecCCeeEEEecccCc---hhhhh
Confidence            664  779999999999999999988755544332   678888888877799999999999999999987   44444

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4.1e-32  Score=222.89  Aligned_cols=285  Identities=15%  Similarity=0.228  Sum_probs=229.4

Q ss_pred             eeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEE
Q 013717           92 SVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIR  165 (437)
Q Consensus        92 ~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~  165 (437)
                      ...| .|+++|.+++.+  .++++||+.| .-.+|++.++.+...  +   .+|+..|+++.|+.++  |+||+.+|.|+
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e--l---tgHKDSVt~~~FshdgtlLATGdmsG~v~  131 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE--L---TGHKDSVTCCSFSHDGTLLATGDMSGKVL  131 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeE--e---cCCCCceEEEEEccCceEEEecCCCccEE
Confidence            4566 999999999999  7899999999 999999999764333  3   5799999999999554  99999999999


Q ss_pred             EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc
Q 013717          166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR  243 (437)
Q Consensus       166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~  243 (437)
                      ||+..++.....+.                              ..-..|.=+.|+|  ..|++|+.||.+-+|.+.+..
T Consensus       132 v~~~stg~~~~~~~------------------------------~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~  181 (399)
T KOG0296|consen  132 VFKVSTGGEQWKLD------------------------------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA  181 (399)
T ss_pred             EEEcccCceEEEee------------------------------cccCceEEEEecccccEEEeecCCCcEEEEECCCcc
Confidence            99999886443332                              2445667788898  899999999999999999988


Q ss_pred             eEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEee-CccccEEEEEEccCCCEEEEEeCCCcE
Q 013717          244 CLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLE-KHKSAVNALALSDDGTVLFSGACDRSI  321 (437)
Q Consensus       244 ~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i  321 (437)
                      ..+.+.+|..++++-.|.|+|+ ++++..||+|++||..+..    ++..+. .......++.++..+..++.|+.++.+
T Consensus       182 ~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~----p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~  257 (399)
T KOG0296|consen  182 LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ----PLHKITQAEGLELPCISLNLAGSTLTKGNSEGVA  257 (399)
T ss_pred             eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCc----eeEEecccccCcCCccccccccceeEeccCCccE
Confidence            8899999999999999999999 9999999999999887654    444433 234567788999999999999999999


Q ss_pred             EEEECCCCccceEEee----eecccccceEEEE---eeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEE
Q 013717          322 LVWDREDSANHMVVTG----ALRGHGKAILCLI---NVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSL  392 (437)
Q Consensus       322 ~i~d~~~~~~~~~~~~----~~~~~~~~i~~~~---~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l  392 (437)
                      ++-+..+++.......    ....+...+-++.   ++..  +.|+|+-||+|.|||+....    ++..-.|..+|+.+
T Consensus       258 ~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~----~R~~c~he~~V~~l  333 (399)
T KOG0296|consen  258 CGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST----LRHICEHEDGVTKL  333 (399)
T ss_pred             EEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch----hheeccCCCceEEE
Confidence            9998887764433321    0112333333333   3333  88999999999999998744    45556699999999


Q ss_pred             EEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          393 TAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       393 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      .|.++.      +|++++.||.|+.||.+++..
T Consensus       334 ~w~~t~------~l~t~c~~g~v~~wDaRtG~l  360 (399)
T KOG0296|consen  334 KWLNTD------YLLTACANGKVRQWDARTGQL  360 (399)
T ss_pred             EEcCcc------hheeeccCceEEeeeccccce
Confidence            999943      899999999999999999865

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.5e-33  Score=239.49  Aligned_cols=269  Identities=19%  Similarity=0.248  Sum_probs=226.7

Q ss_pred             cceeecc-ccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeec
Q 013717           60 LSLQTLP-SVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINT  134 (437)
Q Consensus        60 ~~~~~~~-~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~  134 (437)
                      .++.+.| ...++++.+.|+.|.+|++.....+++++ ||..+|.+++|+  |..+.+++.| .|++||.++|  ++...
T Consensus       218 sai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG--~~~~~  295 (503)
T KOG0282|consen  218 SAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETG--QVLSR  295 (503)
T ss_pred             chhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccc--eEEEE
Confidence            4667778 88899999999999999998899999999 999999999999  9999999999 9999999996  45555


Q ss_pred             cccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717          135 FNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH  211 (437)
Q Consensus       135 ~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (437)
                      +    .-...+.|+.|.|+.   +++|+.|+.|+.||+++++..+.+.                              .|
T Consensus       296 f----~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd------------------------------~h  341 (503)
T KOG0282|consen  296 F----HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD------------------------------RH  341 (503)
T ss_pred             E----ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH------------------------------hh
Confidence            4    134577899998654   9999999999999999998666554                              48


Q ss_pred             CCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee-cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc
Q 013717          212 GDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH  287 (437)
Q Consensus       212 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~  287 (437)
                      -+.|..+.|-+  ..+++.+.|++++||+.+..-.+..+. .......++..+|++. +++-+.|+.|.+|.+.. .-..
T Consensus       342 Lg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~-~~r~  420 (503)
T KOG0282|consen  342 LGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP-PFRL  420 (503)
T ss_pred             hhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccc-cccc
Confidence            89999999987  899999999999999998876665443 3344677899999999 88899999999997542 2222


Q ss_pred             eeeEEeeCcc--ccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCC
Q 013717          288 ALIATLEKHK--SAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSAD  362 (437)
Q Consensus       288 ~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~d  362 (437)
                      ...+.+++|.  +.-..+.|||||.+|++|+.||.+.+||.++.+    +...+.+|...+..+.|++.   .+|+++.|
T Consensus       421 nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k----l~~~lkah~~~ci~v~wHP~e~Skvat~~w~  496 (503)
T KOG0282|consen  421 NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK----LVSKLKAHDQPCIGVDWHPVEPSKVATCGWD  496 (503)
T ss_pred             CHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh----hhhccccCCcceEEEEecCCCcceeEecccC
Confidence            3344566665  456788999999999999999999999998765    55667889999999999876   99999999


Q ss_pred             CcEEEee
Q 013717          363 RTVRIWQ  369 (437)
Q Consensus       363 g~i~iwd  369 (437)
                      |.|++||
T Consensus       497 G~Ikiwd  503 (503)
T KOG0282|consen  497 GLIKIWD  503 (503)
T ss_pred             ceeEecC
Confidence            9999996

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.9e-32  Score=210.15  Aligned_cols=243  Identities=21%  Similarity=0.365  Sum_probs=204.2

Q ss_pred             CCCcccEEEEEEeCC--eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717          139 DSSSGSVKSVTFCDG--KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT  216 (437)
Q Consensus       139 ~~h~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  216 (437)
                      ..++++|.++.|+-+  ..++++.|.+|++|+...+..++..                              .+|..+|.
T Consensus        14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY------------------------------sghG~EVl   63 (307)
T KOG0316|consen   14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY------------------------------SGHGHEVL   63 (307)
T ss_pred             cccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee------------------------------cCCCceee
Confidence            679999999999943  4999999999999999888655544                              37999999


Q ss_pred             EEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEe
Q 013717          217 GLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATL  293 (437)
Q Consensus       217 ~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~  293 (437)
                      .++...  ..+++|+.|..+.+||+.+|+.++.+.+|.+.|+.++|+.+.. +++|+.|..+++||.+..  ..++++.+
T Consensus        64 D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~--s~ePiQil  141 (307)
T KOG0316|consen   64 DAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR--SFEPIQIL  141 (307)
T ss_pred             eccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccC--CCCccchh
Confidence            887755  8999999999999999999999999999999999999998888 999999999999999754  34677788


Q ss_pred             eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCC
Q 013717          294 EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSD  373 (437)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~  373 (437)
                      ......|.++...  +..|++|+.||+++.||++.+.    +...+.+|.....+++.+++..++++.|+++++.|-.++
T Consensus       142 dea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~----l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG  215 (307)
T KOG0316|consen  142 DEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGT----LSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG  215 (307)
T ss_pred             hhhcCceeEEEec--ccEEEeeccCCcEEEEEeecce----eehhhcCCcceeEEecCCCCEEEEeeccceeeecccchh
Confidence            8788899999987  6689999999999999998876    444445555444445555679999999999999999998


Q ss_pred             CCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          374 GRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       374 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      +   ++..+++|.+.-..+..+-....   ..+++|++||.|++||+..+..
T Consensus       216 k---lL~sYkGhkn~eykldc~l~qsd---thV~sgSEDG~Vy~wdLvd~~~  261 (307)
T KOG0316|consen  216 K---LLKSYKGHKNMEYKLDCCLNQSD---THVFSGSEDGKVYFWDLVDETQ  261 (307)
T ss_pred             H---HHHHhcccccceeeeeeeecccc---eeEEeccCCceEEEEEecccee
Confidence            8   89999999887666655543322   3799999999999999987653

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=8.4e-33  Score=215.72  Aligned_cols=276  Identities=21%  Similarity=0.331  Sum_probs=227.5

Q ss_pred             CccCCeEEEEee-----CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEE
Q 013717           96 GHKLPIGCIAVH-----HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVW  167 (437)
Q Consensus        96 ~h~~~V~~l~~~-----~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw  167 (437)
                      ||+.+|..++|+     |-+|++++.| .-.+-+-+++.|  +.+|   ++|.+.|...+.+.+.  -++++.|-+-++|
T Consensus        12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw--igtf---eghkgavw~~~l~~na~~aasaaadftakvw   86 (334)
T KOG0278|consen   12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW--IGTF---EGHKGAVWSATLNKNATRAASAAADFTAKVW   86 (334)
T ss_pred             CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc--EEee---eccCcceeeeecCchhhhhhhhcccchhhhh
Confidence            999999999999     7899999999 777777777655  4555   7899999999998765  7788999999999


Q ss_pred             eCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc-e
Q 013717          168 QLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR-C  244 (437)
Q Consensus       168 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-~  244 (437)
                      |.-++..+..+.                               |..-|.+++|+.  ++|++|+.+..+||||++..+ +
T Consensus        87 ~a~tgdelhsf~-------------------------------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap  135 (334)
T KOG0278|consen   87 DAVTGDELHSFE-------------------------------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP  135 (334)
T ss_pred             hhhhhhhhhhhh-------------------------------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCC
Confidence            999987665554                               888999999998  999999999999999997654 5


Q ss_pred             EEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEE
Q 013717          245 LESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILV  323 (437)
Q Consensus       245 ~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  323 (437)
                      ...+.+|.+.|..+.|....+ |++.+.|++||+||.+++.    .++.+. ...+|+++..+++|++|.++ ..+.|.+
T Consensus       136 p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt----~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~F  209 (334)
T KOG0278|consen  136 PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT----EVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKF  209 (334)
T ss_pred             chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc----EEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEE
Confidence            667789999999999987777 9999999999999988775    455554 56789999999999887766 4567999


Q ss_pred             EECCCCccceEEeeeecccccceEEEEe--eCCEEEEEeCCCcEEEeeCCCCCCeeeeee-ecCCCCCeeEEEEEccCCC
Q 013717          324 WDREDSANHMVVTGALRGHGKAILCLIN--VAGLLMSGSADRTVRIWQRGSDGRFGCLAV-LEGHTKPVKSLTAVTEEGQ  400 (437)
Q Consensus       324 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~  400 (437)
                      ||..+........     ....|.+.+.  ....+++|++|..++.||..++.   .+.. -++|.++|.|+.|+|++. 
T Consensus       210 wdaksf~~lKs~k-----~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge---Ei~~~nkgh~gpVhcVrFSPdGE-  280 (334)
T KOG0278|consen  210 WDAKSFGLLKSYK-----MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE---EIGSYNKGHFGPVHCVRFSPDGE-  280 (334)
T ss_pred             eccccccceeecc-----CccccccccccCCCceEEecCcceEEEEEeccCCc---eeeecccCCCCceEEEEECCCCc-
Confidence            9998755322221     2334444444  44599999999999999999988   4444 489999999999999995 


Q ss_pred             CceEEEEEecCCCcEEEEeeccCCCC
Q 013717          401 NGVVSVFSGSLDGEIRAWQVSVSCPN  426 (437)
Q Consensus       401 ~~~~~l~s~~~dg~i~iw~~~~~~~~  426 (437)
                          ..++||.||+||+|....++..
T Consensus       281 ----~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  281 ----LYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             ----eeeccCCCceEEEEEecCCCch
Confidence                7999999999999999877654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2e-31  Score=245.66  Aligned_cols=270  Identities=24%  Similarity=0.447  Sum_probs=223.9

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcc-eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeec
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLC-INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINT  134 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~-~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~  134 (437)
                      ..+.|++....+++.+.++.+.+|...... ...+.+ +|...|.+++|+  ++++++++.| +|+|||+... ...+++
T Consensus       163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-~~~~~~  241 (456)
T KOG0266|consen  163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-GRNLKT  241 (456)
T ss_pred             EEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC-CeEEEE
Confidence            456889999999999999999999995544 356666 999999999999  8899999999 9999999432 355666


Q ss_pred             cccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717          135 FNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG  212 (437)
Q Consensus       135 ~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (437)
                      +   .+|...|++++|++..  +++|+.|++|++||+++++....+                              .+|.
T Consensus       242 l---~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l------------------------------~~hs  288 (456)
T KOG0266|consen  242 L---KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL------------------------------KGHS  288 (456)
T ss_pred             e---cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee------------------------------eccC
Confidence            6   6899999999999665  999999999999999987654444                              4799


Q ss_pred             CcEEEEEeCC--CeEEEEECCCcEEEEECCCcc--eEEEeeccccc--EEEEEEecCCe-EEEEeCCCeEEEecCCCCcc
Q 013717          213 DAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR--CLESIKAHEDA--VNAVAVSAGGT-VYTGSADRKIRVWAKPFNEK  285 (437)
Q Consensus       213 ~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~--v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~  285 (437)
                      +.|++++|++  ++|++++.|+.|++||+.++.  +...+..+...  ++++.|+|++. +++++.|+.+++||+.... 
T Consensus       289 ~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~-  367 (456)
T KOG0266|consen  289 DGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK-  367 (456)
T ss_pred             CceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc-
Confidence            9999999998  999999999999999999998  56677655554  99999999999 9999999999999987543 


Q ss_pred             cceeeEEeeCccc---cEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccc-ccceEEEEeeC--CEEEEE
Q 013717          286 RHALIATLEKHKS---AVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH-GKAILCLINVA--GLLMSG  359 (437)
Q Consensus       286 ~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~i~~~~~~~--~~l~~~  359 (437)
                         ....+.+|..   .+.+..+++.+.++++|+.|+.|++||+.++.    ....+.+| ...+..+.+++  ++++++
T Consensus       368 ---~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~----~~~~l~~h~~~~~~~~~~~~~~~~~~s~  440 (456)
T KOG0266|consen  368 ---SVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG----ILQRLEGHSKAAVSDLSSHPTENLIASS  440 (456)
T ss_pred             ---ceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc----hhhhhcCCCCCceeccccCCCcCeeeec
Confidence               4555666665   45555667899999999999999999998755    34445677 77777777664  488888


Q ss_pred             e--CCCcEEEeeCC
Q 013717          360 S--ADRTVRIWQRG  371 (437)
Q Consensus       360 ~--~dg~i~iwd~~  371 (437)
                      +  .|+.+++|...
T Consensus       441 s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  441 SFEGDGLIRLWKYD  454 (456)
T ss_pred             CcCCCceEEEecCC
Confidence            8  68999999754

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-30  Score=210.06  Aligned_cols=268  Identities=18%  Similarity=0.315  Sum_probs=211.3

Q ss_pred             EEEEecC-eEEEEeCCCCc------e-eeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccC
Q 013717          111 LYAASSH-EINVYDRTGTT------W-TSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLP  182 (437)
Q Consensus       111 l~s~~~d-~v~vwd~~~~~------~-~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  182 (437)
                      +++|+.. .|.-+++.-..      . -.+..+..+..|.+.|++++.+.-.+++|+.|.+|+|||+........+.   
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll---   80 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILL---   80 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhccee---
Confidence            5667777 66667665321      0 11122334478999999999999999999999999999999876544432   


Q ss_pred             ccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEEEECCCcEEEEECCCcceEEEeecccccEEEE
Q 013717          183 TVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAV  258 (437)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  258 (437)
                                                 .|.+.|+++.|.+    ..|++|+.||.|.+|+....+++..+++|.+.|+.+
T Consensus        81 ---------------------------~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~l  133 (362)
T KOG0294|consen   81 ---------------------------SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDL  133 (362)
T ss_pred             ---------------------------ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccccccee
Confidence                                       5999999999987    489999999999999999999999999999999999


Q ss_pred             EEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEee
Q 013717          259 AVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTG  337 (437)
Q Consensus       259 ~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  337 (437)
                      +++|.++ -++.+.|+.+++||+-.+....  +..+   ....+.+.|+|.|.+++.+..++ |-||.+.+.......  
T Consensus       134 siHPS~KLALsVg~D~~lr~WNLV~Gr~a~--v~~L---~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i--  205 (362)
T KOG0294|consen  134 SIHPSGKLALSVGGDQVLRTWNLVRGRVAF--VLNL---KNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREI--  205 (362)
T ss_pred             EecCCCceEEEEcCCceeeeehhhcCccce--eecc---CCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhh--
Confidence            9999999 6788999999999986554221  1122   22334499999999999988765 999999865422222  


Q ss_pred             eecccccceEEEEee-CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEE
Q 013717          338 ALRGHGKAILCLINV-AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIR  416 (437)
Q Consensus       338 ~~~~~~~~i~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  416 (437)
                        . ....+.|+.|. +..|++|++|+.|++||..+..   ++..+.+|...|.++.+..+...   .||+|+|.||.|+
T Consensus       206 --~-~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~---~~~~~~AH~~RVK~i~~~~~~~~---~~lvTaSSDG~I~  276 (362)
T KOG0294|consen  206 --E-NPKRILCATFLDGSELLVGGDNEWISLKDTDSDT---PLTEFLAHENRVKDIASYTNPEH---EYLVTASSDGFIK  276 (362)
T ss_pred             --h-ccccceeeeecCCceEEEecCCceEEEeccCCCc---cceeeecchhheeeeEEEecCCc---eEEEEeccCceEE
Confidence              1 22556777776 4599999999999999999855   88999999999999997655332   5999999999999


Q ss_pred             EEeeccCCC
Q 013717          417 AWQVSVSCP  425 (437)
Q Consensus       417 iw~~~~~~~  425 (437)
                      +||++....
T Consensus       277 vWd~~~~~k  285 (362)
T KOG0294|consen  277 VWDIDMETK  285 (362)
T ss_pred             EEEcccccc
Confidence            999998743

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-29  Score=205.48  Aligned_cols=284  Identities=18%  Similarity=0.258  Sum_probs=219.3

Q ss_pred             eec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe--CCeEEEEec--CCeE
Q 013717           93 VQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC--DGKIFTAHQ--DCKI  164 (437)
Q Consensus        93 ~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~--dg~i  164 (437)
                      +.+ .....|.++.|+  |++|++++.| .+++||..++  +...++   ..+.-.|..++|.  ++.++.++.  |.+|
T Consensus         8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g--~~~~ti---~skkyG~~~~~Fth~~~~~i~sStk~d~tI   82 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG--KQVKTI---NSKKYGVDLACFTHHSNTVIHSSTKEDDTI   82 (311)
T ss_pred             cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC--ceeeEe---ecccccccEEEEecCCceEEEccCCCCCce
Confidence            344 457899999999  9999999999 9999999995  444444   3466688888887  444666665  8899


Q ss_pred             EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc
Q 013717          165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL  242 (437)
Q Consensus       165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~  242 (437)
                      +.-++.+.+.++                              .|.||...|++++.+|  +.+++++.|++|++||++..
T Consensus        83 ryLsl~dNkylR------------------------------YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~  132 (311)
T KOG1446|consen   83 RYLSLHDNKYLR------------------------------YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK  132 (311)
T ss_pred             EEEEeecCceEE------------------------------EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC
Confidence            999999886544                              3458999999999999  99999999999999999988


Q ss_pred             ceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEee-CccccEEEEEEccCCCEEEEEeCCCc
Q 013717          243 RCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLE-KHKSAVNALALSDDGTVLFSGACDRS  320 (437)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~  320 (437)
                      ++...+.....+  ..+|.|+|. +|++...+.|++||++.-.........+. +.....+.|.|+|||++|+.++..+.
T Consensus       133 ~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~  210 (311)
T KOG1446|consen  133 KCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF  210 (311)
T ss_pred             CCceEEecCCCc--ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc
Confidence            888777644443  478999999 77777777999999986543332222232 45678999999999999999999999


Q ss_pred             EEEEECCCCccceEEeeeecccccce-EEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecC-CCCCeeEEEEEccC
Q 013717          321 ILVWDREDSANHMVVTGALRGHGKAI-LCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEG-HTKPVKSLTAVTEE  398 (437)
Q Consensus       321 i~i~d~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~  398 (437)
                      +++.|.-+|.....+.........++ .++.++++++++|+.||+|.+|+++++.   .+..+.+ +.+++.++.|.|..
T Consensus       211 ~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~---~v~~~~~~~~~~~~~~~fnP~~  287 (311)
T KOG1446|consen  211 IYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK---KVAVLRGPNGGPVSCVRFNPRY  287 (311)
T ss_pred             EEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCc---EeeEecCCCCCCccccccCCce
Confidence            99999988874444333222221222 4445667799999999999999999987   6777777 78999999999964


Q ss_pred             CCCceEEEEEecCCCcEEEEeeccC
Q 013717          399 GQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       399 ~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                             ..-++.+..+-+|=....
T Consensus       288 -------~mf~sa~s~l~fw~p~~~  305 (311)
T KOG1446|consen  288 -------AMFVSASSNLVFWLPDED  305 (311)
T ss_pred             -------eeeeecCceEEEEecccc
Confidence                   444445668999976644

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=3.6e-30  Score=255.04  Aligned_cols=275  Identities=11%  Similarity=0.161  Sum_probs=217.6

Q ss_pred             cceeeccccccccccCCCceeEEecCCCc-------ceeeeecCccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCc
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHL-------CINSVQLGHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTT  128 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~-------~~~~~~~~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~  128 (437)
                      .++.|.|....+++++.|+.|++|+....       ......+.+...|.+++|+   +.+|++++.| .|++||+.++ 
T Consensus       487 ~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~-  565 (793)
T PLN00181        487 CAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS-  565 (793)
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC-
Confidence            46789999999999999999999997431       1123334556789999997   6899999999 9999999884 


Q ss_pred             eeeeeccccCCCCcccEEEEEEeC-C--eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccc
Q 013717          129 WTSINTFNDNDSSSGSVKSVTFCD-G--KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKK  205 (437)
Q Consensus       129 ~~~~~~~~~~~~h~~~v~~l~~~~-~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (437)
                       +.+..+   .+|.+.|.+++|++ +  .|++|+.||+|++||+.++.....+.                          
T Consensus       566 -~~~~~~---~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~--------------------------  615 (793)
T PLN00181        566 -QLVTEM---KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK--------------------------  615 (793)
T ss_pred             -eEEEEe---cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe--------------------------
Confidence             444444   57999999999984 3  39999999999999998765433221                          


Q ss_pred             eeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcc-eEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCC
Q 013717          206 KLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLR-CLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKP  281 (437)
Q Consensus       206 ~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~  281 (437)
                           +...|.++.|.+   .++++|+.||.|++||+++.+ .+..+.+|...|.++.|.+...+++++.|+.|++||++
T Consensus       616 -----~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~  690 (793)
T PLN00181        616 -----TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLS  690 (793)
T ss_pred             -----cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCC
Confidence                 335788998853   799999999999999998765 46677789999999999854459999999999999987


Q ss_pred             CCc--ccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEee---------eecccccceEEEE
Q 013717          282 FNE--KRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTG---------ALRGHGKAILCLI  350 (437)
Q Consensus       282 ~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~~~~i~~~~  350 (437)
                      ...  .....+..+.+|...+..++|+|++.+|++|+.|+.|++|+............         ....+...|.+++
T Consensus       691 ~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~  770 (793)
T PLN00181        691 MSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC  770 (793)
T ss_pred             CCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence            432  12346778889999999999999999999999999999999865432221110         1123456688888


Q ss_pred             eeCC--EEEEEeCCCcEEEeeC
Q 013717          351 NVAG--LLMSGSADRTVRIWQR  370 (437)
Q Consensus       351 ~~~~--~l~~~~~dg~i~iwd~  370 (437)
                      |+++  .|++|+.||.|+||++
T Consensus       771 ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        771 WRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EcCCCCeEEEecCCCcEEEEec
Confidence            8755  9999999999999986

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=9.2e-31  Score=224.22  Aligned_cols=298  Identities=18%  Similarity=0.277  Sum_probs=219.1

Q ss_pred             eec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCce--eeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeE
Q 013717           93 VQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTW--TSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKI  164 (437)
Q Consensus        93 ~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~--~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i  164 (437)
                      ..+ +|+..|.++++.  |-.|++|+.| +|++||+.....  +..+.+..  .....|+++.|++.+  |++.+.....
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP--CETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCc--ccccccceeeecCCCCeEEEEecCcce
Confidence            344 999999999998  9999999999 999999987422  22222221  234578999999544  7777778899


Q ss_pred             EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCC
Q 013717          165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASD  241 (437)
Q Consensus       165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~  241 (437)
                      +++|-+..+.....+.              +.++.    ......+|...++|.+|+|   ..+++++.||+++|||+..
T Consensus       239 kl~DRdG~~~~e~~KG--------------DQYI~----Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~  300 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKG--------------DQYIR----DMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN  300 (641)
T ss_pred             eEEccCCceeeeeecc--------------chhhh----hhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCC
Confidence            9999876554333221              11110    0112258999999999999   8999999999999999976


Q ss_pred             cc-eEEEee-----cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccc--cEEEEEEccCCCEE
Q 013717          242 LR-CLESIK-----AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKS--AVNALALSDDGTVL  312 (437)
Q Consensus       242 ~~-~~~~~~-----~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l  312 (437)
                      .+ .++.++     +..-.++.++|++++. ||+|+.||.|.+|+..... ....+..-.+|..  .|++|.|++||++|
T Consensus       301 ~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~AH~~g~~Itsi~FS~dg~~L  379 (641)
T KOG0772|consen  301 TKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT-VRPVMKVKDAHLPGQDITSISFSYDGNYL  379 (641)
T ss_pred             chhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcc-cccceEeeeccCCCCceeEEEeccccchh
Confidence            54 333333     3345789999999999 9999999999999975322 2223333445665  89999999999999


Q ss_pred             EEEeCCCcEEEEECCCCccceEEe-eeecccccceEEEEeeCCEEEEEeC------CCcEEEeeCCCCCCeeeeeeecCC
Q 013717          313 FSGACDRSILVWDREDSANHMVVT-GALRGHGKAILCLINVAGLLMSGSA------DRTVRIWQRGSDGRFGCLAVLEGH  385 (437)
Q Consensus       313 ~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~h  385 (437)
                      ++-+.|+++++||++..+...... .........-.|++++..+|++|+.      .|.+.+||..+-+   .+.++.-.
T Consensus       380 lSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d---~v~ki~i~  456 (641)
T KOG0772|consen  380 LSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD---TVYKIDIS  456 (641)
T ss_pred             hhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee---eEEEecCC
Confidence            999999999999999765443222 2222223334566666668888864      5689999988755   67777666


Q ss_pred             CCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717          386 TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       386 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~  419 (437)
                      ...|..+.|+|.-++     |+.|+.||.+++|-
T Consensus       457 ~aSvv~~~WhpkLNQ-----i~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  457 TASVVRCLWHPKLNQ-----IFAGSGDGTAHVYY  485 (641)
T ss_pred             CceEEEEeecchhhh-----eeeecCCCceEEEE
Confidence            788999999998875     77788899998874

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.6e-31  Score=239.42  Aligned_cols=270  Identities=20%  Similarity=0.304  Sum_probs=203.7

Q ss_pred             CCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccc-----------------c--------------Ccccc
Q 013717          140 SSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTT-----------------L--------------PTVND  186 (437)
Q Consensus       140 ~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~-----------------~--------------~~~~~  186 (437)
                      +|.+.|.++.|++++  ||+||.||.|+||.+...+....-..                 .              .....
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            799999999999766  99999999999999876221100000                 0              00000


Q ss_pred             ceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe
Q 013717          187 RLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT  265 (437)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  265 (437)
                      ... ...+.....+...+.+.|.||.+.|.++.|+. ++|++++.|.+|++|++...+++..|. |.+.|+|++|+|-..
T Consensus       345 s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD  422 (712)
T KOG0283|consen  345 SPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD  422 (712)
T ss_pred             Ccc-ccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence            000 12222223344555677899999999999999 999999999999999999999999997 999999999999443


Q ss_pred             --EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeec---
Q 013717          266 --VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALR---  340 (437)
Q Consensus       266 --l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---  340 (437)
                        |++|+.||.|+||++...     .+..+.....-|++++|.|||++.+.|+.+|.+++|+....+......-...   
T Consensus       423 ryFiSGSLD~KvRiWsI~d~-----~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K  497 (712)
T KOG0283|consen  423 RYFISGSLDGKVRLWSISDK-----KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK  497 (712)
T ss_pred             CcEeecccccceEEeecCcC-----eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence              999999999999988643     2444555668899999999999999999999999999987543332221111   


Q ss_pred             -ccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCC--CeeEEEEEccCCCCceEEEEEecCCCc
Q 013717          341 -GHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTK--PVKSLTAVTEEGQNGVVSVFSGSLDGE  414 (437)
Q Consensus       341 -~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~l~s~~~dg~  414 (437)
                       .....|+.+.+.+.   .+++.+.|..|||||.+...   ++..++|+..  .-....|+.++     ++|+++++|..
T Consensus       498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~---lv~KfKG~~n~~SQ~~Asfs~Dg-----k~IVs~seDs~  569 (712)
T KOG0283|consen  498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD---LVHKFKGFRNTSSQISASFSSDG-----KHIVSASEDSW  569 (712)
T ss_pred             cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh---hhhhhcccccCCcceeeeEccCC-----CEEEEeecCce
Confidence             11237999988743   68889999999999997655   7777777543  23455678877     48999999999


Q ss_pred             EEEEeeccCC
Q 013717          415 IRAWQVSVSC  424 (437)
Q Consensus       415 i~iw~~~~~~  424 (437)
                      |++|+++...
T Consensus       570 VYiW~~~~~~  579 (712)
T KOG0283|consen  570 VYIWKNDSFN  579 (712)
T ss_pred             EEEEeCCCCc
Confidence            9999986543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=3.6e-31  Score=212.99  Aligned_cols=289  Identities=18%  Similarity=0.298  Sum_probs=222.9

Q ss_pred             eeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCC------------c----eeeeeccccCCCCcccEEEEEE
Q 013717           91 NSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGT------------T----WTSINTFNDNDSSSGSVKSVTF  150 (437)
Q Consensus        91 ~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~------------~----~~~~~~~~~~~~h~~~v~~l~~  150 (437)
                      ....+ .|..++.+.+|+  |.++|+|+.| .|+|.|++..            .    -..++++   ..|...|+++.|
T Consensus       104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl---YDH~devn~l~F  180 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL---YDHVDEVNDLDF  180 (430)
T ss_pred             ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh---hhccCcccceee
Confidence            33445 999999999999  9999999999 9999999721            0    1123333   679999999999


Q ss_pred             eCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEE
Q 013717          151 CDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIY  226 (437)
Q Consensus       151 ~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~  226 (437)
                      .|..  |++++.|++|+++|+......+..+.+                            ....+|.++.|+|  .+++
T Consensus       181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~----------------------------qd~~~vrsiSfHPsGefll  232 (430)
T KOG0640|consen  181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVF----------------------------QDTEPVRSISFHPSGEFLL  232 (430)
T ss_pred             cchhheEEeccCCCeEEEEecccHHHHHHHHHh----------------------------hccceeeeEeecCCCceEE
Confidence            9875  999999999999999876544444433                            2567899999999  8999


Q ss_pred             EEECCCcEEEEECCCcceEEEee---cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEee-Cc-cccE
Q 013717          227 SVSWDKSLKIWRASDLRCLESIK---AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLE-KH-KSAV  300 (437)
Q Consensus       227 ~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~-~~~i  300 (437)
                      .|..-..+++||+.+.++...-.   .|.+.|+++.+++.+. .++|+.||.|++||=-.    .+++.++. .| ...|
T Consensus       233 vgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS----~rCv~t~~~AH~gsev  308 (430)
T KOG0640|consen  233 VGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVS----NRCVRTIGNAHGGSEV  308 (430)
T ss_pred             EecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeecccc----HHHHHHHHhhcCCcee
Confidence            99999999999999988765543   6889999999999999 89999999999997433    33555543 34 4579


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeee-cccccceEEEEee--CCEEEEEeC-CCcEEEeeCCCCCCe
Q 013717          301 NALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGAL-RGHGKAILCLINV--AGLLMSGSA-DRTVRIWQRGSDGRF  376 (437)
Q Consensus       301 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~~l~~~~~-dg~i~iwd~~~~~~~  376 (437)
                      .+..|..+|+++++.+.|..+++|.+.+++......+.- .+....-+...|+  .++++.-.+ .+.+.-||.++..+ 
T Consensus       309 cSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr-  387 (430)
T KOG0640|consen  309 CSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR-  387 (430)
T ss_pred             eeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh-
Confidence            999999999999999999999999999987655543320 0111111222233  445555444 57899999998773 


Q ss_pred             eeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          377 GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       377 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                       ....-.+|.+.+..+.-+|.++     -+++|+.|-.+|+|--+
T Consensus       388 -~~l~slgHn~a~R~i~HSP~~p-----~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  388 -VALLSLGHNGAVRWIVHSPVEP-----AFMTCSDDFRARFWYRR  426 (430)
T ss_pred             -hhhcccCCCCCceEEEeCCCCC-----ceeeecccceeeeeeec
Confidence             2223357999999999999987     59999999999999643

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.3e-32  Score=224.12  Aligned_cols=283  Identities=18%  Similarity=0.286  Sum_probs=225.9

Q ss_pred             ceeeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCe
Q 013717           89 CINSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCK  163 (437)
Q Consensus        89 ~~~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~  163 (437)
                      .+.+..| ||.+.|.|++-+   -..+++|+.| .|+|||+..  ..+..++   ..|.+.|..|++..+.+++++.|.+
T Consensus        56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq--R~~~~~f---~AH~G~V~Gi~v~~~~~~tvgdDKt  130 (433)
T KOG0268|consen   56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ--RECIRTF---KAHEGLVRGICVTQTSFFTVGDDKT  130 (433)
T ss_pred             ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhh--hhhhhee---ecccCceeeEEecccceEEecCCcc
Confidence            3445566 999999999999   2579999999 999999988  4455555   6899999999999988999999999


Q ss_pred             EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCC
Q 013717          164 IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASD  241 (437)
Q Consensus       164 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~  241 (437)
                      |+.|.++..    ....+                            .-...+..+.-+.  +.++++++  .|.|||.+.
T Consensus       131 vK~wk~~~~----p~~ti----------------------------lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R  176 (433)
T KOG0268|consen  131 VKQWKIDGP----PLHTI----------------------------LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQR  176 (433)
T ss_pred             eeeeeccCC----cceee----------------------------eccccccccccccccccccccCc--eeeeccccc
Confidence            999998752    11110                            1233455555544  67777776  499999999


Q ss_pred             cceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC
Q 013717          242 LRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR  319 (437)
Q Consensus       242 ~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  319 (437)
                      ..++..+.-..+.|.++.|+|-..  |+++..|+.|.+||++.+....+.+..+     .-+.|+|+|.+--+++|++|.
T Consensus       177 ~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m-----RTN~IswnPeafnF~~a~ED~  251 (433)
T KOG0268|consen  177 DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM-----RTNTICWNPEAFNFVAANEDH  251 (433)
T ss_pred             CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec-----cccceecCccccceeeccccc
Confidence            999999988888999999999887  7888899999999999877555554443     356799999888999999999


Q ss_pred             cEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc
Q 013717          320 SILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE  397 (437)
Q Consensus       320 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~  397 (437)
                      .++.||++....   ....+.+|...|+.++|++.  -+++|+.|.+|+||.++.+.......+-  --..|.++.|+.|
T Consensus       252 nlY~~DmR~l~~---p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk--RMq~V~~Vk~S~D  326 (433)
T KOG0268|consen  252 NLYTYDMRNLSR---PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK--RMQHVFCVKYSMD  326 (433)
T ss_pred             cceehhhhhhcc---cchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh--hhheeeEEEEecc
Confidence            999999986543   44557889999999998854  9999999999999999876632222221  2347999999998


Q ss_pred             CCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          398 EGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       398 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      .     +|+++||+|+.||+|.-...+.
T Consensus       327 s-----kyi~SGSdd~nvRlWka~Asek  349 (433)
T KOG0268|consen  327 S-----KYIISGSDDGNVRLWKAKASEK  349 (433)
T ss_pred             c-----cEEEecCCCcceeeeecchhhh
Confidence            8     5999999999999999876554

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=100.00  E-value=1.1e-30  Score=231.36  Aligned_cols=277  Identities=28%  Similarity=0.498  Sum_probs=232.9

Q ss_pred             ceeeeec-CccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEE-EEEeC---CeEEEEecC
Q 013717           89 CINSVQL-GHKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKS-VTFCD---GKIFTAHQD  161 (437)
Q Consensus        89 ~~~~~~~-~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~---~~l~s~~~d  161 (437)
                      .++.+.+ ||...|..+++. +..++++|.| ++++|+-..+.+.....+   .+|.+-|.. +++.+   .++++|+.|
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~---~~~~g~i~~~i~y~e~~~~~l~~g~~D   80 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAF---EGPKGFIANSICYAESDKGRLVVGGMD   80 (745)
T ss_pred             ceeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceec---ccCcceeeccceeccccCcceEeeccc
Confidence            4556677 999999999988 7789999999 999999987655555555   567787777 88773   339999999


Q ss_pred             CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECC
Q 013717          162 CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRAS  240 (437)
Q Consensus       162 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~  240 (437)
                      ++|.+|...+......+                              .+|...|.++.... ..+++|+.|.++++|.. 
T Consensus        81 ~~i~v~~~~~~~P~~~L------------------------------kgH~snVC~ls~~~~~~~iSgSWD~TakvW~~-  129 (745)
T KOG0301|consen   81 TTIIVFKLSQAEPLYTL------------------------------KGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI-  129 (745)
T ss_pred             ceEEEEecCCCCchhhh------------------------------hccccceeeeecCCcCceEecccccceEEecc-
Confidence            99999999877654444                              48999999999776 66899999999999975 


Q ss_pred             CcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCc
Q 013717          241 DLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRS  320 (437)
Q Consensus       241 ~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  320 (437)
                       +++...+++|...|++++.-|++.+++|+.|..|++|.-      .+.++++.+|...|+.+++-+++ .|++++.||.
T Consensus       130 -~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~------~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~  201 (745)
T KOG0301|consen  130 -GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG------GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGS  201 (745)
T ss_pred             -hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccC------CchhhhhccchhheeeeEEecCC-CeEeecCCce
Confidence             556677999999999999999999999999999999953      25788999999999999999775 6788999999


Q ss_pred             EEEEECCCCccceEEeeeecccccceEEEEe--eCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccC
Q 013717          321 ILVWDREDSANHMVVTGALRGHGKAILCLIN--VAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEE  398 (437)
Q Consensus       321 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  398 (437)
                      |+.|++. ++    ....+.+|..-+.+++.  ++..++++++|++++||+...     +.+.+.-....|+++.+-+++
T Consensus       202 Ir~w~~~-ge----~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e-----~~q~I~lPttsiWsa~~L~Ng  271 (745)
T KOG0301|consen  202 IRLWDLD-GE----VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE-----CVQVITLPTTSIWSAKVLLNG  271 (745)
T ss_pred             EEEEecc-Cc----eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCc-----eEEEEecCccceEEEEEeeCC
Confidence            9999994 44    44557889999988883  344999999999999999883     777777556689999999888


Q ss_pred             CCCceEEEEEecCCCcEEEEeeccC
Q 013717          399 GQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       399 ~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      +      +++|+.||.||||..+..
T Consensus       272 D------Ivvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  272 D------IVVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             C------EEEeccCceEEEEEeccc
Confidence            4      999999999999988744

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-30  Score=229.13  Aligned_cols=271  Identities=23%  Similarity=0.352  Sum_probs=226.2

Q ss_pred             EEee-CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccc
Q 013717          104 IAVH-HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTT  180 (437)
Q Consensus       104 l~~~-~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~  180 (437)
                      +.|+ .+.||.|....|.+|+..++....+..+     +...|+++.|++++  |+.|..+|.|.|||..+.+....+. 
T Consensus       183 ldWss~n~laValg~~vylW~~~s~~v~~l~~~-----~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~-  256 (484)
T KOG0305|consen  183 LDWSSANVLAVALGQSVYLWSASSGSVTELCSF-----GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR-  256 (484)
T ss_pred             hhcccCCeEEEEecceEEEEecCCCceEEeEec-----CCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc-
Confidence            3445 6788888887999999999876666554     48999999999655  9999999999999998776555443 


Q ss_pred             cCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEE-eecccccEEEEE
Q 013717          181 LPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLES-IKAHEDAVNAVA  259 (437)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~  259 (437)
                                                  ..|...|-+++|+...+.+|+.|+.|.++|++..+.... +.+|...|..++
T Consensus       257 ----------------------------~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLk  308 (484)
T KOG0305|consen  257 ----------------------------GSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLK  308 (484)
T ss_pred             ----------------------------CCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeE
Confidence                                        128999999999999999999999999999998876655 778999999999


Q ss_pred             EecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEcc-CCCEEEEEe--CCCcEEEEECCCCccceEE
Q 013717          260 VSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD-DGTVLFSGA--CDRSILVWDREDSANHMVV  335 (437)
Q Consensus       260 ~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--~dg~i~i~d~~~~~~~~~~  335 (437)
                      |++|+. +|+|+.|+.+.|||....    .+...+..|.+.|.+++|+| ...+||+|+  .|+.|++||..++.....+
T Consensus       309 ws~d~~~lASGgnDN~~~Iwd~~~~----~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v  384 (484)
T KOG0305|consen  309 WSPDGNQLASGGNDNVVFIWDGLSP----EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV  384 (484)
T ss_pred             ECCCCCeeccCCCccceEeccCCCc----cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc
Confidence            999999 999999999999987432    46777888999999999999 556888864  5999999999987643322


Q ss_pred             eeeecccccceEEEEeeCCE--EEE--EeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecC
Q 013717          336 TGALRGHGKAILCLINVAGL--LMS--GSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSL  411 (437)
Q Consensus       336 ~~~~~~~~~~i~~~~~~~~~--l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~  411 (437)
                           .....|..+.|...+  |++  |..++.|.||+..+.+   .+..+.+|...|..++++|++.     .+++|+.
T Consensus       385 -----dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~---~~~~l~gH~~RVl~la~SPdg~-----~i~t~a~  451 (484)
T KOG0305|consen  385 -----DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK---LVAELLGHTSRVLYLALSPDGE-----TIVTGAA  451 (484)
T ss_pred             -----ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc---eeeeecCCcceeEEEEECCCCC-----EEEEecc
Confidence                 246778999998762  443  4457899999999855   8899999999999999999985     7999999


Q ss_pred             CCcEEEEeeccCCC
Q 013717          412 DGEIRAWQVSVSCP  425 (437)
Q Consensus       412 dg~i~iw~~~~~~~  425 (437)
                      |.++++|++-...+
T Consensus       452 DETlrfw~~f~~~~  465 (484)
T KOG0305|consen  452 DETLRFWNLFDERP  465 (484)
T ss_pred             cCcEEeccccCCCC
Confidence            99999999987533

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.1e-32  Score=219.80  Aligned_cols=282  Identities=20%  Similarity=0.294  Sum_probs=232.0

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccC---CCCcccEEEEEEeCCe--EEEEecCCeEEEE
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDN---DSSSGSVKSVTFCDGK--IFTAHQDCKIRVW  167 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~---~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw  167 (437)
                      |...-+-|..|+  |+||++|+.| .|.+||..+|+.+.-..+...   .-+..+|.|+.|+.+.  +++|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            778889999999  9999999999 999999999755444333221   3378899999999665  9999999999999


Q ss_pred             eCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceE
Q 013717          168 QLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCL  245 (437)
Q Consensus       168 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~  245 (437)
                      .+.++++++.+.                             ..|...|+|+.|+.  ..+++++.|.++++.-+..|+++
T Consensus       291 ri~tG~ClRrFd-----------------------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~L  341 (508)
T KOG0275|consen  291 RIETGQCLRRFD-----------------------------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCL  341 (508)
T ss_pred             EEecchHHHHhh-----------------------------hhhccCeeEEEEccCcchhhcccccceEEEeccccchhH
Confidence            999998877665                             35999999999987  89999999999999999999999


Q ss_pred             EEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC--ccccEEEEEEccC-CCEEEEEeCCCcE
Q 013717          246 ESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK--HKSAVNALALSDD-GTVLFSGACDRSI  321 (437)
Q Consensus       246 ~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~-~~~l~~~~~dg~i  321 (437)
                      ..+++|...|+...|.++|. +++++.||+|++|+..+.    +++.+++.  ...+|+++-..|. -..++++...++|
T Consensus       342 KEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt----eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv  417 (508)
T KOG0275|consen  342 KEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTT----ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTV  417 (508)
T ss_pred             HHhcCccccccceEEcCCCCeEEEecCCccEEEecCcch----hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeE
Confidence            99999999999999999999 999999999999976544    35555553  4567888888884 4588889999999


Q ss_pred             EEEECCCCccceEEeeeecccccce-EEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCC
Q 013717          322 LVWDREDSANHMVVTGALRGHGKAI-LCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ  400 (437)
Q Consensus       322 ~i~d~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  400 (437)
                      +|.++... ....+...-+....-| .++++.|+++.+.++|+.++.|.+.+++   +-.++.-|...|..++-+|..+ 
T Consensus       418 ~imn~qGQ-vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~---LE~tl~VhEkdvIGl~HHPHqN-  492 (508)
T KOG0275|consen  418 YIMNMQGQ-VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK---LERTLPVHEKDVIGLTHHPHQN-  492 (508)
T ss_pred             EEEeccce-EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc---eeeeeecccccccccccCcccc-
Confidence            99998642 1111111111112223 4456667899999999999999999988   7788888999999999999875 


Q ss_pred             CceEEEEEecCCCcEEEEe
Q 013717          401 NGVVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       401 ~~~~~l~s~~~dg~i~iw~  419 (437)
                          +|++-+.||.+++|.
T Consensus       493 ----llAsYsEDgllKLWk  507 (508)
T KOG0275|consen  493 ----LLASYSEDGLLKLWK  507 (508)
T ss_pred             ----hhhhhcccchhhhcC
Confidence                799999999999995

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.3e-31  Score=205.77  Aligned_cols=270  Identities=20%  Similarity=0.263  Sum_probs=215.0

Q ss_pred             ceeeccccc---ccccc-----CCCceeEEecCC-C-cceeeeecCccCCeEEEEee---CCEEEEEecC-eEEEEeCCC
Q 013717           61 SLQTLPSVP---SLQKL-----SPDETINFSSAS-H-LCINSVQLGHKLPIGCIAVH---HNFLYAASSH-EINVYDRTG  126 (437)
Q Consensus        61 ~~~~~~~~~---~~~s~-----s~dg~i~~~~~~-~-~~~~~~~~~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~  126 (437)
                      +++|+|-.+   ++++.     ..+|.+.+.+.+ . .-...+.+.-.+.+..++|+   .+.+++++.| .+++||...
T Consensus        13 svqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~   92 (311)
T KOG0277|consen   13 SVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM   92 (311)
T ss_pred             eeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCC
Confidence            566666443   23332     468899999985 2 23334444778999999999   7888888888 999999554


Q ss_pred             CceeeeeccccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeec
Q 013717          127 TTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRH  203 (437)
Q Consensus       127 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (437)
                      . ...+..+   +.|...|.++.|+...   +++++.|++|++|+....+.+.                           
T Consensus        93 ~-s~Pi~~~---kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---------------------------  141 (311)
T KOG0277|consen   93 P-SKPIHKF---KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ---------------------------  141 (311)
T ss_pred             C-CcchhHH---HhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE---------------------------
Confidence            2 2344444   7899999999999432   8889999999999988665333                           


Q ss_pred             cceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEe
Q 013717          204 KKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVW  278 (437)
Q Consensus       204 ~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iw  278 (437)
                         .+.+|...|...+|+|   +.+++++.|+++++||++..-....+..|...|.++.|+..+.  +++|+.|+.|+.|
T Consensus       142 ---Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w  218 (311)
T KOG0277|consen  142 ---TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW  218 (311)
T ss_pred             ---eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence               3458999999999998   9999999999999999986544455888999999999998665  9999999999999


Q ss_pred             cCCCCcccceeeEEeeCccccEEEEEEccC-CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee---CC
Q 013717          279 AKPFNEKRHALIATLEKHKSAVNALALSDD-GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV---AG  354 (437)
Q Consensus       279 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~  354 (437)
                      |++.-.   .++..+.+|.-.|+.+.|+|. ...|++++.|-+++|||...+..   .+.....|..-+..+.|+   +.
T Consensus       219 Dir~~r---~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds---~~e~~~~HtEFv~g~Dws~~~~~  292 (311)
T KOG0277|consen  219 DIRNLR---TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS---AIETVDHHTEFVCGLDWSLFDPG  292 (311)
T ss_pred             ehhhcc---ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh---hhhhhhccceEEeccccccccCc
Confidence            998544   467788999999999999995 45899999999999999975433   333455688888888776   55


Q ss_pred             EEEEEeCCCcEEEeeC
Q 013717          355 LLMSGSADRTVRIWQR  370 (437)
Q Consensus       355 ~l~~~~~dg~i~iwd~  370 (437)
                      ++|+.+.|+.++||+-
T Consensus       293 ~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  293 QVASTGWDELLYVWNP  308 (311)
T ss_pred             eeeecccccceeeecc
Confidence            9999999999999983

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.98  E-value=1.8e-29  Score=221.96  Aligned_cols=268  Identities=29%  Similarity=0.431  Sum_probs=219.9

Q ss_pred             ccceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717           59 NLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTF  135 (437)
Q Consensus        59 ~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~  135 (437)
                      ..++.+.|....+++++.||.+.+|+...........+|...+.++.|.  +++|++++.+ .|++||+..+  +....+
T Consensus        12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~--~~~~~~   89 (289)
T cd00200          12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG--ECVRTL   89 (289)
T ss_pred             EEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--cceEEE
Confidence            3467888888899999999999999997655333333999999999998  6699999988 9999999884  233333


Q ss_pred             ccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717          136 NDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD  213 (437)
Q Consensus       136 ~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (437)
                         ..|...|.++.|+++.  +++++.||.|++||+.+++....+                              ..|..
T Consensus        90 ---~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------------------------------~~~~~  136 (289)
T cd00200          90 ---TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL------------------------------RGHTD  136 (289)
T ss_pred             ---eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe------------------------------ccCCC
Confidence               4688899999999754  666666999999999865533322                              24888


Q ss_pred             cEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceee
Q 013717          214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALI  290 (437)
Q Consensus       214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~  290 (437)
                      .+.++.+++  .++++++.||.|++||+++++.+..+..+...+.++.|+|++. +++++.+|.|++||++..    ..+
T Consensus       137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~----~~~  212 (289)
T cd00200         137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG----KCL  212 (289)
T ss_pred             cEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC----cee
Confidence            999999999  6666666699999999999998888888888999999999996 889999999999998653    355


Q ss_pred             EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC--CEEEEEeCCCcEEEe
Q 013717          291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLLMSGSADRTVRIW  368 (437)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~i~iw  368 (437)
                      ..+..|...+.++.|+|++.++++++.||.|++||+.+++    ....+..|...+.++.+++  .+|++++.||.|++|
T Consensus       213 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw  288 (289)
T cd00200         213 GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE----CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW  288 (289)
T ss_pred             cchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce----eEEEccccCCcEEEEEECCCCCEEEEecCCCeEEec
Confidence            6666788899999999998899988889999999998754    3334457888898988886  599999999999999


Q ss_pred             e
Q 013717          369 Q  369 (437)
Q Consensus       369 d  369 (437)
                      +
T Consensus       289 ~  289 (289)
T cd00200         289 D  289 (289)
T ss_pred             C
Confidence            6

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.1e-30  Score=217.84  Aligned_cols=272  Identities=21%  Similarity=0.307  Sum_probs=220.9

Q ss_pred             cccceeeccccccccccCCCceeEEecCC--Ccceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceee
Q 013717           58 SNLSLQTLPSVPSLQKLSPDETINFSSAS--HLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTS  131 (437)
Q Consensus        58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~--~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~  131 (437)
                      ...-++|+++...+++++.|.+..+|...  ...++..++ ||..+|.-+.|+  .++|++++.+ .+.+||+.+|....
T Consensus       226 EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~  305 (519)
T KOG0293|consen  226 EVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRH  305 (519)
T ss_pred             cEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhh
Confidence            44578999999999999999999999983  345667777 999999999999  8999999999 99999999975443


Q ss_pred             eeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717          132 INTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI  209 (437)
Q Consensus       132 ~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (437)
                      ...    .+|...+.+++|.||+  +++|+.|++|..||++...... -..                             
T Consensus       306 ~y~----~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~-W~g-----------------------------  351 (519)
T KOG0293|consen  306 LYP----SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGN-WEG-----------------------------  351 (519)
T ss_pred             hcc----cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhc-ccc-----------------------------
Confidence            333    3467899999999887  9999999999999998653211 110                             


Q ss_pred             cCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCccc
Q 013717          210 EHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKR  286 (437)
Q Consensus       210 ~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~  286 (437)
                      -....|.+++..+  +++++.+.|..|++++.++......+. ...+|+++.++.+++ +++.-.+..+++||+..+   
T Consensus       352 vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---  427 (519)
T KOG0293|consen  352 VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---  427 (519)
T ss_pred             cccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---
Confidence            1234688888876  899999999999999998766554443 567899999999999 677778999999998743   


Q ss_pred             ceeeEEeeCcccc--EEEEEEcc-CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEe
Q 013717          287 HALIATLEKHKSA--VNALALSD-DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGS  360 (437)
Q Consensus       287 ~~~~~~~~~~~~~--i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~  360 (437)
                       ..++.+.+|...  +..-+|.- +..++++|++|+.|+||+..+++    +...+.||...|.|++|+|.   .+|+++
T Consensus       428 -~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk----ll~~LsGHs~~vNcVswNP~~p~m~ASas  502 (519)
T KOG0293|consen  428 -KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK----LLAVLSGHSKTVNCVSWNPADPEMFASAS  502 (519)
T ss_pred             -hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc----eeEeecCCcceeeEEecCCCCHHHhhccC
Confidence             466667777654  33344543 55799999999999999998887    66678999999999999976   999999


Q ss_pred             CCCcEEEeeCCC
Q 013717          361 ADRTVRIWQRGS  372 (437)
Q Consensus       361 ~dg~i~iwd~~~  372 (437)
                      .||+||||....
T Consensus       503 DDgtIRIWg~~~  514 (519)
T KOG0293|consen  503 DDGTIRIWGPSD  514 (519)
T ss_pred             CCCeEEEecCCc
Confidence            999999998764

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.98  E-value=4.1e-30  Score=228.51  Aligned_cols=323  Identities=18%  Similarity=0.235  Sum_probs=251.2

Q ss_pred             cceeeccccccccccCCCceeEEecCCCc---ceeeeecCccCCeEEEEee-------------CCEEEEEecC-eEEEE
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHL---CINSVQLGHKLPIGCIAVH-------------HNFLYAASSH-EINVY  122 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~---~~~~~~~~h~~~V~~l~~~-------------~~~l~s~~~d-~v~vw  122 (437)
                      -.++|.+....+.-+-.|+.+++||+...   .++...+.|...|..+.--             ...+++++.| +||+|
T Consensus       328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW  407 (1080)
T KOG1408|consen  328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW  407 (1080)
T ss_pred             eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence            45789999999999999999999999543   4444445999999887642             3568899999 99999


Q ss_pred             eCCCCceeeeeccc--------------------------------cCCCCcccEEEEEEeCCe--EEEEecCCeEEEEe
Q 013717          123 DRTGTTWTSINTFN--------------------------------DNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQ  168 (437)
Q Consensus       123 d~~~~~~~~~~~~~--------------------------------~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd  168 (437)
                      |+.......+..-.                                ...+....+.+++.+|++  |++|..-|++++|+
T Consensus       408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~  487 (1080)
T KOG1408|consen  408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD  487 (1080)
T ss_pred             ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence            99863111110000                                002234579999999876  99999999999999


Q ss_pred             CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-----CeEEEEECCCcEEEEECCC-c
Q 013717          169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-----GLIYSVSWDKSLKIWRASD-L  242 (437)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~dg~i~iwd~~~-~  242 (437)
                      +..-+....+                              ..|+.+|.|+.++.     ++|++++.|..|+|||+.. .
T Consensus       488 Lq~l~~~~~~------------------------------eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny  537 (1080)
T KOG1408|consen  488 LQELEYTCFM------------------------------EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY  537 (1080)
T ss_pred             ehhhhhhhhe------------------------------ecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence            9876544333                              35999999999976     8999999999999999864 4


Q ss_pred             ceEEEeecccccEEEEEEecCC--e-EEEEeCCCeEEEecCCCCcccceee--EEeeCccccEEEEEEccCCCEEEEEeC
Q 013717          243 RCLESIKAHEDAVNAVAVSAGG--T-VYTGSADRKIRVWAKPFNEKRHALI--ATLEKHKSAVNALALSDDGTVLFSGAC  317 (437)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~--~-l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~  317 (437)
                      .+++++.+|...|+++.|--.|  . +++++.|..|.+ +...........  ..-......++.|+..|..+++++++.
T Consensus       538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ  616 (1080)
T KOG1408|consen  538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ  616 (1080)
T ss_pred             chhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence            5678888999999999998766  3 899999987754 332111111111  111123467899999999999999999


Q ss_pred             CCcEEEEECCCCccceEEeeeecccccceEEEE--eeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEE
Q 013717          318 DRSILVWDREDSANHMVVTGALRGHGKAILCLI--NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAV  395 (437)
Q Consensus       318 dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~  395 (437)
                      |..|+|||+.+++....+.+. .+|.+....+.  +++.||++...|.++.++|..+++   ++.++.||...|+.+.|.
T Consensus       617 Drnirif~i~sgKq~k~FKgs-~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgE---cvA~m~GHsE~VTG~kF~  692 (1080)
T KOG1408|consen  617 DRNIRIFDIESGKQVKSFKGS-RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGE---CVAQMTGHSEAVTGVKFL  692 (1080)
T ss_pred             ccceEEEeccccceeeeeccc-ccCCCceEEEEECCCccEEEEeecCCceEEEEeccch---hhhhhcCcchheeeeeec
Confidence            999999999999877666554 45656555554  556699999999999999999988   999999999999999999


Q ss_pred             ccCCCCceEEEEEecCCCcEEEEeecc
Q 013717          396 TEEGQNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       396 ~~~~~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                      +|-.     .|++.+.||.|.||.+..
T Consensus       693 nDCk-----HlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  693 NDCK-----HLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             ccch-----hheeecCCceEEEEECch
Confidence            9985     599999999999999765

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.98  E-value=6.4e-30  Score=200.93  Aligned_cols=274  Identities=14%  Similarity=0.179  Sum_probs=219.3

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC---CeEEEEecCCeEEEEeC
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD---GKIFTAHQDCKIRVWQL  169 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~~~dg~i~iwd~  169 (437)
                      +|...|.+++|+  |..|++|+.| ++.+|+++..+.  ... ....+|.+.|..++|.+   +.+++++.|.+|++||+
T Consensus        18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~--~~~-~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~   94 (313)
T KOG1407|consen   18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF--RKE-LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI   94 (313)
T ss_pred             hhhhcceEEEEcccCceeeecccCCceEEEEecchhh--hhh-hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence            999999999999  9999999999 999999998522  222 23368999999999984   45999999999999999


Q ss_pred             CCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEE
Q 013717          170 TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLES  247 (437)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~  247 (437)
                      +.++......                               ....=.-+.|+|  .+++.++.|..|.+.|.++.+....
T Consensus        95 r~~k~~~~i~-------------------------------~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~  143 (313)
T KOG1407|consen   95 RSGKCTARIE-------------------------------TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE  143 (313)
T ss_pred             ccCcEEEEee-------------------------------ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeeh
Confidence            9987655443                               222223456777  9999999999999999999887776


Q ss_pred             eecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEEC
Q 013717          248 IKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDR  326 (437)
Q Consensus       248 ~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (437)
                      .+ ....+..+.|+.++. ++.....|.|.|...    ...+++..+++|.....||.|+|+|++||+|+.|..+.+||+
T Consensus       144 ~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsy----psLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~  218 (313)
T KOG1407|consen  144 EQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSY----PSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDV  218 (313)
T ss_pred             hc-ccceeeeeeecCCCCEEEEecCCceEEEEec----cccccccccccCCcceEEEEECCCCceEeeccccceeeccCh
Confidence            65 556788899987776 555556699999854    355688899999999999999999999999999999999999


Q ss_pred             CCCccceEEeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceE
Q 013717          327 EDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVV  404 (437)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~  404 (437)
                      ...-    ....+..+.-+|..++|+  +++||+|++|..|-|=+++++.   .+..++ +.++...++|+|...     
T Consensus       219 ~ELi----C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd---~~~eI~-~~~~t~tVAWHPk~~-----  285 (313)
T KOG1407|consen  219 DELI----CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGD---RVWEIP-CEGPTFTVAWHPKRP-----  285 (313)
T ss_pred             hHhh----hheeeccccCceEEEEeccCcceeeccCccceEEeEecccCC---eEEEee-ccCCceeEEecCCCc-----
Confidence            6543    444455677778666665  6699999999999999999988   455554 788999999999885     


Q ss_pred             EEEEecCC---------CcEEEEeec
Q 013717          405 SVFSGSLD---------GEIRAWQVS  421 (437)
Q Consensus       405 ~l~s~~~d---------g~i~iw~~~  421 (437)
                      +|+-+++|         |.|+++-+.
T Consensus       286 LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  286 LLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             eeeEEecCCCCccccccceeEEecCC
Confidence            56655543         567776554

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.98  E-value=1.1e-29  Score=213.28  Aligned_cols=274  Identities=20%  Similarity=0.279  Sum_probs=227.2

Q ss_pred             CCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCc
Q 013717           99 LPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTK  173 (437)
Q Consensus        99 ~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~  173 (437)
                      ..|.++...  .+.+.+|+.| .+.++|...+  +.+..+   .||...|+.+.++++.  +++++.|..|++|......
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~--q~l~~~---~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s  294 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSN--QILATL---KGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS  294 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchh--hhhhhc---cCcceEEEEEEeccchhheeecCCcceEEeecccccc
Confidence            567888877  4899999999 9999999883  455555   7999999999999876  9999999999999987665


Q ss_pred             ccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeec-
Q 013717          174 HHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKA-  250 (437)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-  250 (437)
                      .....                              ..|..+|+.+..++  .||++++.||+..+.|++++..+..... 
T Consensus       295 ~~~~~------------------------------~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~  344 (506)
T KOG0289|consen  295 EPTSS------------------------------RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE  344 (506)
T ss_pred             Ccccc------------------------------ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec
Confidence            33332                              35999999999998  9999999999999999999998877653 


Q ss_pred             -ccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 013717          251 -HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRED  328 (437)
Q Consensus       251 -~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (437)
                       ..-.+++.+|+|||. |.+|..||.|++||+....    ....|.+|.++|..++|+.+|.+|++++.|+.|++||++.
T Consensus       345 ~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~----~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRK  420 (506)
T KOG0289|consen  345 TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT----NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRK  420 (506)
T ss_pred             cccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc----ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehh
Confidence             234599999999999 9999999999999987543    6778899999999999999999999999999999999997


Q ss_pred             CccceEEeeeecccccceEEEEe--eCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEE
Q 013717          329 SANHMVVTGALRGHGKAILCLIN--VAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSV  406 (437)
Q Consensus       329 ~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l  406 (437)
                      .+....+..   .....+.++.+  +|.+|+.++.|=+|++++-.+. .|.++..+..|.+..+++.|....     +++
T Consensus       421 l~n~kt~~l---~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k-~W~~~~~~~~~sg~st~v~Fg~~a-----q~l  491 (506)
T KOG0289|consen  421 LKNFKTIQL---DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTK-SWTEIKELADHSGLSTGVRFGEHA-----QYL  491 (506)
T ss_pred             hcccceeec---cccccceeEEEcCCCCeEEeecceeEEEEEecccc-cceeeehhhhcccccceeeecccc-----eEE
Confidence            664333321   12224555555  4679999988877777775543 478899999999999999998776     599


Q ss_pred             EEecCCCcEEEEee
Q 013717          407 FSGSLDGEIRAWQV  420 (437)
Q Consensus       407 ~s~~~dg~i~iw~~  420 (437)
                      +++|.|..++++.+
T Consensus       492 ~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  492 ASTSMDAILRLYAL  505 (506)
T ss_pred             eeccchhheEEeec
Confidence            99999999998865

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=2.2e-30  Score=209.23  Aligned_cols=320  Identities=17%  Similarity=0.272  Sum_probs=239.2

Q ss_pred             ceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCC
Q 013717           89 CINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDC  162 (437)
Q Consensus        89 ~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg  162 (437)
                      ..+++.+ ||.+.|..++..  ...+.+++.| +.+||.++++  .++.++   .+|.+.|++|.|++.+  +++++.|+
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg--~CL~~Y---~GH~GSVNsikfh~s~~L~lTaSGD~  212 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG--ACLATY---TGHTGSVNSIKFHNSGLLLLTASGDE  212 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccc--cceeee---cccccceeeEEeccccceEEEccCCc
Confidence            5566677 999999999988  6788999999 9999999995  555555   6899999999999766  88999999


Q ss_pred             eEEEEeCCCCcccccccc---cCcc-----ccceeeecCCCCee--EEeeccceeeecCCCcEEEEEeCC--CeEEEEEC
Q 013717          163 KIRVWQLTPTKHHKLKTT---LPTV-----NDRLLRFMLPNSYV--TVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW  230 (437)
Q Consensus       163 ~i~iwd~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~  230 (437)
                      +-.||...-.-.......   ....     .+.-......+...  -...-+...+.+|...|.+..|-.  +.+++++.
T Consensus       213 taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSW  292 (481)
T KOG0300|consen  213 TAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASW  292 (481)
T ss_pred             chHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeec
Confidence            999997321110000000   0000     00000000000000  011122345678999999998865  89999999


Q ss_pred             CCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC
Q 013717          231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG  309 (437)
Q Consensus       231 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  309 (437)
                      |.+..+||+++++.+..+.+|....+.+.-+|..+ +++.+.|-+.++||++..   ...+..|++|...|+++.|..+.
T Consensus       293 DRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea---I~sV~VFQGHtdtVTS~vF~~dd  369 (481)
T KOG0300|consen  293 DRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA---IQSVAVFQGHTDTVTSVVFNTDD  369 (481)
T ss_pred             cccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh---cceeeeecccccceeEEEEecCC
Confidence            99999999999999999999999999999999998 889999999999998733   35677899999999999998754


Q ss_pred             CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCCCCCCee-eeeeecCCC
Q 013717          310 TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFG-CLAVLEGHT  386 (437)
Q Consensus       310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~h~  386 (437)
                       .+++|+.|.+|+|||+++.+....-+.    ...++..++.+  ...|+.-..+..|++||+....... +...-++|.
T Consensus       370 -~vVSgSDDrTvKvWdLrNMRsplATIR----tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHr  444 (481)
T KOG0300|consen  370 -RVVSGSDDRTVKVWDLRNMRSPLATIR----TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHR  444 (481)
T ss_pred             -ceeecCCCceEEEeeeccccCcceeee----cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccc
Confidence             688999999999999997665443332    23445555544  4488888888999999998644211 222456899


Q ss_pred             CCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          387 KPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       387 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      ..|.|++|..+.+-   .-|+++|.|..+.-|++..+.
T Consensus       445 RMV~c~AW~eehp~---cnLftcGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  445 RMVTCCAWLEEHPA---CNLFTCGFDRMVAGWKINTPT  479 (481)
T ss_pred             eeeeeeeccccCcc---cccccccccceeeeeEecccC
Confidence            99999999876532   249999999999999998764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=4.2e-31  Score=220.31  Aligned_cols=281  Identities=21%  Similarity=0.302  Sum_probs=224.8

Q ss_pred             eeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeE
Q 013717           91 NSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKI  164 (437)
Q Consensus        91 ~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i  164 (437)
                      ....+ .|.+.|..+.|-  ...|++|+.| .|++|+...++.....++   .+..++|+.+.|.+++  +++++.|+.+
T Consensus       167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tL---aGs~g~it~~d~d~~~~~~iAas~d~~~  243 (459)
T KOG0288|consen  167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTL---AGSLGNITSIDFDSDNKHVIAASNDKNL  243 (459)
T ss_pred             hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhh---hccCCCcceeeecCCCceEEeecCCCce
Confidence            33445 899999999998  4899999999 999999998765566666   6778899999998544  9999999999


Q ss_pred             EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc
Q 013717          165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL  242 (437)
Q Consensus       165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~  242 (437)
                      ++|+++..+....+.                              +|.+.|+++.|..  ..+++|+.|.+|++||+...
T Consensus       244 r~Wnvd~~r~~~TLs------------------------------GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~  293 (459)
T KOG0288|consen  244 RLWNVDSLRLRHTLS------------------------------GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA  293 (459)
T ss_pred             eeeeccchhhhhhhc------------------------------ccccceeeehhhccccceeeccccchhhhhhhhhh
Confidence            999999887555443                              7999999999977  44999999999999999998


Q ss_pred             ceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEE
Q 013717          243 RCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSIL  322 (437)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  322 (437)
                      .+..++- ....+..|..+ ...+++|..|++|++||++...    ....... .+.|+++..+++|..|.+++.|.++.
T Consensus       294 ~C~kt~l-~~S~cnDI~~~-~~~~~SgH~DkkvRfwD~Rs~~----~~~sv~~-gg~vtSl~ls~~g~~lLsssRDdtl~  366 (459)
T KOG0288|consen  294 YCSKTVL-PGSQCNDIVCS-ISDVISGHFDKKVRFWDIRSAD----KTRSVPL-GGRVTSLDLSMDGLELLSSSRDDTLK  366 (459)
T ss_pred             heecccc-ccccccceEec-ceeeeecccccceEEEeccCCc----eeeEeec-CcceeeEeeccCCeEEeeecCCCcee
Confidence            8887765 34456667665 2338999999999999987654    4445544 45999999999999999999999999


Q ss_pred             EEECCCCccceEEee--eecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCC--CeeEEEEEccC
Q 013717          323 VWDREDSANHMVVTG--ALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTK--PVKSLTAVTEE  398 (437)
Q Consensus       323 i~d~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~  398 (437)
                      +.|+++.+....+..  ...++...-.++++++.|+++|+.||.|+||++.+++   +...+.....  .|++++|+|.+
T Consensus       367 viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgK---lE~~l~~s~s~~aI~s~~W~~sG  443 (459)
T KOG0288|consen  367 VIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGK---LEKVLSLSTSNAAITSLSWNPSG  443 (459)
T ss_pred             eeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCce---EEEEeccCCCCcceEEEEEcCCC
Confidence            999988653333221  1223443345556666699999999999999999987   5555554433  59999999988


Q ss_pred             CCCceEEEEEecCCCcEEEEe
Q 013717          399 GQNGVVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       399 ~~~~~~~l~s~~~dg~i~iw~  419 (437)
                      .     .|++++.++.+.+|.
T Consensus       444 ~-----~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  444 S-----GLLSADKQKAVTLWT  459 (459)
T ss_pred             c-----hhhcccCCcceEecC
Confidence            5     699999999999994

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.97  E-value=1.5e-27  Score=204.12  Aligned_cols=339  Identities=18%  Similarity=0.243  Sum_probs=252.2

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcce--eeeec-C-ccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeee
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCI--NSVQL-G-HKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSIN  133 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~--~~~~~-~-h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~  133 (437)
                      +...|+|..+.+.-....|.+.+|.......  ..-.+ + ...-|.|++|. +.-+++|..+ .|.||+..+  .+..+
T Consensus       204 ~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~--~~~~k  281 (626)
T KOG2106|consen  204 FLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGT--NRISK  281 (626)
T ss_pred             EEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCC--ceEEe
Confidence            5679999999999999999999999865443  33344 3 34789999999 7888899999 999999977  34444


Q ss_pred             ccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeec---------
Q 013717          134 TFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRH---------  203 (437)
Q Consensus       134 ~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  203 (437)
                      ..   ..|.+.|.+++...++ |++|+.|..|..||-+ -+.. ....+|.....+..+......+.+...         
T Consensus       282 ~~---~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~-y~k~-r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~  356 (626)
T KOG2106|consen  282 QV---HAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDN-YRKL-RETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTL  356 (626)
T ss_pred             Ee---eecCCceEEEEEecCccEeecCccceEEecccc-cccc-ccccCchhcCCeeEEecCCCcEEEeeccceEEEeee
Confidence            43   3699999999999665 9999999999999922 2222 222333333333333333333333222         


Q ss_pred             ---cceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEe
Q 013717          204 ---KKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVW  278 (437)
Q Consensus       204 ---~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iw  278 (437)
                         ...+..+|......++.+|  +++++++.|+.+++|+  ..+++.+.. ...++.|+.|+|.|.++.|+..|...+.
T Consensus       357 ~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~  433 (626)
T KOG2106|consen  357 ENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSGVVAVGTATGRWFVL  433 (626)
T ss_pred             cCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcceEEEeeccceEEEE
Confidence               2234578999999999999  9999999999999999  555555543 5678999999999999999999999999


Q ss_pred             cCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EE
Q 013717          279 AKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LL  356 (437)
Q Consensus       279 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l  356 (437)
                      |.++.    ..+..-. ...++++++|+|+|.+||.|+.|+.|+||-+..............+  ..|+.+.|+.+  +|
T Consensus       434 d~e~~----~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLDwS~Ds~~~  506 (626)
T KOG2106|consen  434 DTETQ----DLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG--SPITHLDWSSDSQFL  506 (626)
T ss_pred             ecccc----eeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC--ceeEEeeecCCCceE
Confidence            87652    2343333 3889999999999999999999999999999887766666555544  66666666543  66


Q ss_pred             EEEeCCCcEEEee------------------------------------------------------------CCCCCCe
Q 013717          357 MSGSADRTVRIWQ------------------------------------------------------------RGSDGRF  376 (437)
Q Consensus       357 ~~~~~dg~i~iwd------------------------------------------------------------~~~~~~~  376 (437)
                      .+-+.|-.|..|.                                                            ..-.+..
T Consensus       507 ~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r  586 (626)
T KOG2106|consen  507 VSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPR  586 (626)
T ss_pred             EeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCc
Confidence            6666666666663                                                            2222222


Q ss_pred             eeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEee
Q 013717          377 GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV  420 (437)
Q Consensus       377 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~  420 (437)
                      .....+.+|.+.|++++|.-...     .+++.+.|..|..|++
T Consensus       587 A~~he~~ghs~~vt~V~Fl~~d~-----~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  587 APSHEYGGHSSHVTNVAFLCKDS-----HLISTGKDTSIMQWRL  625 (626)
T ss_pred             ccceeeccccceeEEEEEeeCCc-----eEEecCCCceEEEEEe
Confidence            34456778999999999998775     5777779999999987

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=5.6e-28  Score=186.25  Aligned_cols=299  Identities=19%  Similarity=0.226  Sum_probs=230.6

Q ss_pred             ceeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCC----------ceeeeeccccCCCCcccEEEEEEeCCe-
Q 013717           89 CINSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGT----------TWTSINTFNDNDSSSGSVKSVTFCDGK-  154 (437)
Q Consensus        89 ~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~----------~~~~~~~~~~~~~h~~~v~~l~~~~~~-  154 (437)
                      ..++.++.....|.+++|+  |.+.+.|+.. +.+|.-...-          .......++..+.|.+.|.|.+|++.+ 
T Consensus        23 f~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge  102 (350)
T KOG0641|consen   23 FEAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE  102 (350)
T ss_pred             eEEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC
Confidence            4555666888999999999  8999999988 8888765431          001111122235699999999999776 


Q ss_pred             -EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC------CeEEE
Q 013717          155 -IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN------GLIYS  227 (437)
Q Consensus       155 -l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~l~~  227 (437)
                       +++|+.|.+|++...+.......-.                         ...+.-|.+.|..++|-.      ..|++
T Consensus       103 liatgsndk~ik~l~fn~dt~~~~g~-------------------------dle~nmhdgtirdl~fld~~~s~~~il~s  157 (350)
T KOG0641|consen  103 LIATGSNDKTIKVLPFNADTCNATGH-------------------------DLEFNMHDGTIRDLAFLDDPESGGAILAS  157 (350)
T ss_pred             eEEecCCCceEEEEecccccccccCc-------------------------ceeeeecCCceeeeEEecCCCcCceEEEe
Confidence             9999999999998776543222111                         112345999999999943      56666


Q ss_pred             EE-CCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCc---cccEEEE
Q 013717          228 VS-WDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKH---KSAVNAL  303 (437)
Q Consensus       228 ~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~---~~~i~~~  303 (437)
                      ++ .|..|++-|..+++..+.+.+|.+.|.++---..-.+++|+.|.+|++||++.+.....+-..+.+.   .+.|.++
T Consensus       158 ~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav  237 (350)
T KOG0641|consen  158 AGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV  237 (350)
T ss_pred             cCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence            54 5788899999999999999999999998854434449999999999999998765332222223322   3679999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCC-eeeee
Q 013717          304 ALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGR-FGCLA  380 (437)
Q Consensus       304 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~-~~~~~  380 (437)
                      +..|.|++|++|-.|....+||++.++    .++.+..|...|.|+.|++.  ++++++.|..|++=|+...-. ..++.
T Consensus       238 ~vdpsgrll~sg~~dssc~lydirg~r----~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~  313 (350)
T KOG0641|consen  238 AVDPSGRLLASGHADSSCMLYDIRGGR----MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIM  313 (350)
T ss_pred             EECCCcceeeeccCCCceEEEEeeCCc----eeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceE
Confidence            999999999999999999999999887    56667889999999999987  999999999999999875321 12455


Q ss_pred             eecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          381 VLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       381 ~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      ....|++.+..+.|+|.+-     -+++.+.|.++.+|-+.
T Consensus       314 vv~ehkdk~i~~rwh~~d~-----sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  314 VVAEHKDKAIQCRWHPQDF-----SFISSSADKTATLWALN  349 (350)
T ss_pred             EEEeccCceEEEEecCccc-----eeeeccCcceEEEeccC
Confidence            6677999999999999873     69999999999999764

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.8e-30  Score=231.86  Aligned_cols=245  Identities=19%  Similarity=0.267  Sum_probs=190.6

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCc----------------------------e---------------
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTT----------------------------W---------------  129 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~----------------------------~---------------  129 (437)
                      .|.+.|.++.|+  |+|||+|+.| .|+||.+...+                            .               
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            799999999999  9999999999 99999986500                            0               


Q ss_pred             ------------eeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCC
Q 013717          130 ------------TSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNS  196 (437)
Q Consensus       130 ------------~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (437)
                                  -....+..+.+|.+.|..|.|+.++ |++++.|.+||+|++...+++..+.                 
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-----------------  407 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-----------------  407 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-----------------
Confidence                        0001112237899999999999665 9999999999999999887766654                 


Q ss_pred             eeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCC
Q 013717          197 YVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSAD  272 (437)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d  272 (437)
                                    |.+.|+|++|+|   +++++|+-||.||||++...+.+.- ..-..-|++++|.|||+ .++|+.+
T Consensus       408 --------------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITAvcy~PdGk~avIGt~~  472 (712)
T KOG0283|consen  408 --------------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITAVCYSPDGKGAVIGTFN  472 (712)
T ss_pred             --------------cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee-hhhhhhheeEEeccCCceEEEEEec
Confidence                          999999999999   9999999999999999988765543 34558899999999999 9999999


Q ss_pred             CeEEEecCCCCcccceeeEEee----CccccEEEEEEccC-CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceE
Q 013717          273 RKIRVWAKPFNEKRHALIATLE----KHKSAVNALALSDD-GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAIL  347 (437)
Q Consensus       273 g~v~iwd~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~  347 (437)
                      |.+++|+...............    .....|+.+.|.|. -..+++.+.|..|+|||.++.....++.+....+...-.
T Consensus       473 G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~A  552 (712)
T KOG0283|consen  473 GYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISA  552 (712)
T ss_pred             cEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceee
Confidence            9999998765432111111111    11237999999984 346777889999999999776655555544334343345


Q ss_pred             EEEeeCCEEEEEeCCCcEEEeeCCC
Q 013717          348 CLINVAGLLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       348 ~~~~~~~~l~~~~~dg~i~iwd~~~  372 (437)
                      .+..+|.+|+++++|..|+||+...
T Consensus       553 sfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  553 SFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             eEccCCCEEEEeecCceEEEEeCCC
Confidence            6666888999999999999999743

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.97  E-value=3.1e-29  Score=200.48  Aligned_cols=286  Identities=20%  Similarity=0.292  Sum_probs=222.1

Q ss_pred             CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCc----------eeeeeccccCCCCcccEEEEEEeC--Ce-EEEE
Q 013717           96 GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTT----------WTSINTFNDNDSSSGSVKSVTFCD--GK-IFTA  158 (437)
Q Consensus        96 ~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~----------~~~~~~~~~~~~h~~~v~~l~~~~--~~-l~s~  158 (437)
                      .|.+.|+++.+.   |+|+++|+.| .|.+||++...          -.++.......+|.-.|..+.|.|  .+ +.++
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss  120 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS  120 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence            788999999998   9999999999 99999998632          112212223367899999999984  33 8899


Q ss_pred             ecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-----CeEEEEECCCc
Q 013717          159 HQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-----GLIYSVSWDKS  233 (437)
Q Consensus       159 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~dg~  233 (437)
                      +.|.++++||.++.+....++                               .++.|.+-+++|     .++++|..|-+
T Consensus       121 SFDhtlKVWDtnTlQ~a~~F~-------------------------------me~~VYshamSp~a~sHcLiA~gtr~~~  169 (397)
T KOG4283|consen  121 SFDHTLKVWDTNTLQEAVDFK-------------------------------MEGKVYSHAMSPMAMSHCLIAAGTRDVQ  169 (397)
T ss_pred             cccceEEEeecccceeeEEee-------------------------------cCceeehhhcChhhhcceEEEEecCCCc
Confidence            999999999999876443332                               556677777766     67888899999


Q ss_pred             EEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcc-----------cceeeEEeeCccccE
Q 013717          234 LKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEK-----------RHALIATLEKHKSAV  300 (437)
Q Consensus       234 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~-----------~~~~~~~~~~~~~~i  300 (437)
                      |++-|+..|.+.+.+.+|.+.|.++.|+|...  |++|+.||.|++||++....           ....++.-..|.+.+
T Consensus       170 VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkv  249 (397)
T KOG4283|consen  170 VRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKV  249 (397)
T ss_pred             EEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccccee
Confidence            99999999999999999999999999999887  89999999999999975321           112222334678899


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccce-EE--E-EeeCCEEEEEeCCCcEEEeeCCCCCCe
Q 013717          301 NALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI-LC--L-INVAGLLMSGSADRTVRIWQRGSDGRF  376 (437)
Q Consensus       301 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i-~~--~-~~~~~~l~~~~~dg~i~iwd~~~~~~~  376 (437)
                      ..++|..+|.++++.+.|..+++|+..+++.......... |...+ ..  + .-+...++---.++.+.++++-.+.  
T Consensus       250 ngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~-~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs--  326 (397)
T KOG4283|consen  250 NGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPII-HNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGS--  326 (397)
T ss_pred             eeeeecccchhhhhccCccceEEeecccCccccccccccc-ccccccceEEEeecccceEEEEecCCeEEEEEccCce--
Confidence            9999999999999999999999999998865543332221 11110 11  1 1222344444455889999999877  


Q ss_pred             eeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          377 GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       377 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                       .+..+..|-..|.+.++-|+-.     ...+|+.|+.|..|-..
T Consensus       327 -~ir~l~~h~k~i~c~~~~~~fq-----~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  327 -FVRRLSTHLKRINCAAYRPDFE-----QCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             -EEEeeecccceeeEEeecCchh-----hhhccccCCcccccccc
Confidence             8889999988999999988875     48999999999999873

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=4.4e-30  Score=214.26  Aligned_cols=270  Identities=19%  Similarity=0.259  Sum_probs=220.0

Q ss_pred             cceeeccccccccccCCCceeEEecCCCc-ceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeec
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHL-CINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINT  134 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~-~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~  134 (437)
                      ..+.|.+....+++.+.|..|.+|+.... ...+.++ |-.++|+++.|.  +.++++++.| .+++|++..  .+...+
T Consensus       179 ~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~--~r~~~T  256 (459)
T KOG0288|consen  179 HDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS--LRLRHT  256 (459)
T ss_pred             ceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc--hhhhhh
Confidence            46788899999999999999999999543 4577777 999999999998  8888899999 999999998  455666


Q ss_pred             cccCCCCcccEEEEEEeCC--eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717          135 FNDNDSSSGSVKSVTFCDG--KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG  212 (437)
Q Consensus       135 ~~~~~~h~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (437)
                      +   .+|+..|+++.|.-.  .+++|+.|.+|++||+....+.+.+.                               ..
T Consensus       257 L---sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-------------------------------~~  302 (459)
T KOG0288|consen  257 L---SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-------------------------------PG  302 (459)
T ss_pred             h---cccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-------------------------------cc
Confidence            6   689999999999843  39999999999999999865444333                               34


Q ss_pred             CcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeE
Q 013717          213 DAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIA  291 (437)
Q Consensus       213 ~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~  291 (437)
                      ..+.+|...+..+++|-.|++|++||.+...+......+. .|+++..++++. +++.+.|..+.+.|+++.........
T Consensus       303 S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA  381 (459)
T KOG0288|consen  303 SQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA  381 (459)
T ss_pred             ccccceEecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec
Confidence            5667777778889999999999999999999999987554 899999999999 99999999999999986542222211


Q ss_pred             EeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC--CEEEEEeCCCcEEEe
Q 013717          292 TLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLLMSGSADRTVRIW  368 (437)
Q Consensus       292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~i~iw  368 (437)
                      .-.......+.+.|||++.|+++|+.||.|+||++.+++....+..  ......|+++.|++  ..+++++.++.+.+|
T Consensus       382 ~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~--s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  382 EGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL--STSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             cccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc--CCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            1112334589999999999999999999999999998875544332  22223688888875  499999999999999

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=9.4e-28  Score=220.32  Aligned_cols=261  Identities=18%  Similarity=0.240  Sum_probs=189.1

Q ss_pred             eeCCEEEEEecC-eEEEEeCCCCceee--------eeccccCCCCcccEEEEEEeC-C--eEEEEecCCeEEEEeCCCCc
Q 013717          106 VHHNFLYAASSH-EINVYDRTGTTWTS--------INTFNDNDSSSGSVKSVTFCD-G--KIFTAHQDCKIRVWQLTPTK  173 (437)
Q Consensus       106 ~~~~~l~s~~~d-~v~vwd~~~~~~~~--------~~~~~~~~~h~~~v~~l~~~~-~--~l~s~~~dg~i~iwd~~~~~  173 (437)
                      +.+..+++++.+ ....|+...+....        ......+.+|.+.|.+++|+| +  .|++|+.|++|++||+.++.
T Consensus        30 ~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~  109 (493)
T PTZ00421         30 WDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEG  109 (493)
T ss_pred             CCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCc
Confidence            335667777777 77788766542110        011112368999999999997 3  39999999999999997653


Q ss_pred             ccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeec
Q 013717          174 HHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKA  250 (437)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~  250 (437)
                      ......                       .....+.+|...|.+++|+|   ++|++++.|++|+|||+.+++.+..+..
T Consensus       110 ~~~~~~-----------------------~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~  166 (493)
T PTZ00421        110 LTQNIS-----------------------DPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC  166 (493)
T ss_pred             cccccC-----------------------cceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence            211100                       11223457999999999998   5899999999999999999999999989


Q ss_pred             ccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCcccc-EEEEEEccCCCEEEEEe----CCCcEEEE
Q 013717          251 HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSA-VNALALSDDGTVLFSGA----CDRSILVW  324 (437)
Q Consensus       251 ~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~----~dg~i~i~  324 (437)
                      |...|.+++|+|++. |++++.|+.|++||++...    .+..+.+|.+. +..+.|.+++..+++++    .|+.|++|
T Consensus       167 h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~----~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklW  242 (493)
T PTZ00421        167 HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT----IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLW  242 (493)
T ss_pred             CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc----EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEE
Confidence            999999999999998 9999999999999987643    56667777654 45678899888777654    47899999


Q ss_pred             ECCCCccceEEeeeecccccceEEEEe--eCCEEEEEe-CCCcEEEeeCCCCCCeeeeeeec-CCCCCeeEEEEEccC
Q 013717          325 DREDSANHMVVTGALRGHGKAILCLIN--VAGLLMSGS-ADRTVRIWQRGSDGRFGCLAVLE-GHTKPVKSLTAVTEE  398 (437)
Q Consensus       325 d~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~  398 (437)
                      |+++.........  ..+...+....+  ++++|++++ .|+.|++||+..+.   ++.... .+..++.+++|.|..
T Consensus       243 Dlr~~~~p~~~~~--~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~---~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        243 DTRKMASPYSTVD--LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER---LTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             eCCCCCCceeEec--cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc---eEEEeeccCCCCCcceEecccc
Confidence            9987654332211  112223333334  455777776 59999999999876   333332 355678999999864

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=4.3e-29  Score=211.12  Aligned_cols=255  Identities=20%  Similarity=0.300  Sum_probs=209.6

Q ss_pred             CCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717          140 SSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT  216 (437)
Q Consensus       140 ~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  216 (437)
                      .|.+.|+.+.+.|..   +++.+..+.|.|||............                    .......+.+|...-+
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~--------------------~~~Pdl~L~gH~~eg~  181 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG--------------------ECRPDLRLKGHEKEGY  181 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc--------------------cCCCceEEEeeccccc
Confidence            488999999998654   77788999999999876432221110                    0112234567888888


Q ss_pred             EEEeCC---CeEEEEECCCcEEEEECCCcc-------eEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCc
Q 013717          217 GLAVNN---GLIYSVSWDKSLKIWRASDLR-------CLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNE  284 (437)
Q Consensus       217 ~~~~~~---~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~  284 (437)
                      +++|++   ..+++++.|++|++||+....       ....+.+|...|..++|++-..  |++++.|+.+.|||++.+ 
T Consensus       182 glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-  260 (422)
T KOG0264|consen  182 GLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-  260 (422)
T ss_pred             ccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-
Confidence            899988   899999999999999997543       3455678999999999998665  899999999999999963 


Q ss_pred             ccceeeEEeeCccccEEEEEEcc-CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEe
Q 013717          285 KRHALIATLEKHKSAVNALALSD-DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGS  360 (437)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~  360 (437)
                       ..+......+|.+.|.|++|+| ++..||+|+.|++|.+||+++...   ....+.+|...|.++.|++.   .||+++
T Consensus       261 -~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~---~lh~~e~H~dev~~V~WSPh~etvLASSg  336 (422)
T KOG0264|consen  261 -TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK---PLHTFEGHEDEVFQVEWSPHNETVLASSG  336 (422)
T ss_pred             -CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc---CceeccCCCcceEEEEeCCCCCceeEecc
Confidence             4456677788999999999999 567889999999999999997544   55668899999999999976   999999


Q ss_pred             CCCcEEEeeCCCCC-----------CeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          361 ADRTVRIWQRGSDG-----------RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       361 ~dg~i~iwd~~~~~-----------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      .|+.+.|||+..-.           +.+++..-.||...|..+.|+|..+.    .|+|+++|+.+.||++...
T Consensus       337 ~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW----~I~SvaeDN~LqIW~~s~~  406 (422)
T KOG0264|consen  337 TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW----TIASVAEDNILQIWQMAEN  406 (422)
T ss_pred             cCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCe----EEEEecCCceEEEeecccc
Confidence            99999999986532           24567778899999999999999986    9999999999999998744

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.6e-29  Score=221.09  Aligned_cols=323  Identities=20%  Similarity=0.272  Sum_probs=241.6

Q ss_pred             cccccccccCCCceeEEecCCCcce-----eeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccc
Q 013717           66 PSVPSLQKLSPDETINFSSASHLCI-----NSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFN  136 (437)
Q Consensus        66 ~~~~~~~s~s~dg~i~~~~~~~~~~-----~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~  136 (437)
                      |..+.+.+++.||.|+.|+......     ....+ .|.+.|..++..  ++.|+++|.| +|++|+...+.--+..++ 
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti-  113 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI-  113 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh-
Confidence            4555699999999999999954433     46667 899999999987  8899999999 999999988533445555 


Q ss_pred             cCCCCcccEEEEEE-eCCe--EEEEecCCeEEEEeCCCCcc--cccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717          137 DNDSSSGSVKSVTF-CDGK--IFTAHQDCKIRVWQLTPTKH--HKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH  211 (437)
Q Consensus       137 ~~~~h~~~v~~l~~-~~~~--l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (437)
                        ..|...|.|+++ ..+.  +++||.|+.|.+||++++..  ......++..                     ..-.++
T Consensus       114 --r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~---------------------sl~sG~  170 (735)
T KOG0308|consen  114 --RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVN---------------------SLGSGP  170 (735)
T ss_pred             --hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccc---------------------cCCCCC
Confidence              679999999999 4443  99999999999999998742  1111111100                     001268


Q ss_pred             CCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccce
Q 013717          212 GDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHA  288 (437)
Q Consensus       212 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~  288 (437)
                      ...|++++.++  ..+++|+..+.|++||.++++.+..+++|...|.++..++||. +++++.||+|++||+...    .
T Consensus       171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ----r  246 (735)
T KOG0308|consen  171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ----R  246 (735)
T ss_pred             ccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc----c
Confidence            89999999999  5899999999999999999999999999999999999999998 999999999999988643    4


Q ss_pred             eeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeCCCcEE
Q 013717          289 LIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVR  366 (437)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~  366 (437)
                      ++.++..|...|.++..+|+=.++++|+.||.|+.=|+++..... ++.   ....+|..+..+  .+-+-+++.|+.|+
T Consensus       247 Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~t-lic---k~daPv~~l~~~~~~~~~WvtTtds~I~  322 (735)
T KOG0308|consen  247 CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKST-LIC---KEDAPVLKLHLHEHDNSVWVTTTDSSIK  322 (735)
T ss_pred             eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhhe-Eee---cCCCchhhhhhccccCCceeeeccccce
Confidence            788888999999999999999999999999999999998853222 211   123334444333  34457788899999


Q ss_pred             EeeCCCCCCeeeeeeecCC---------------------CCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          367 IWQRGSDGRFGCLAVLEGH---------------------TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       367 iwd~~~~~~~~~~~~~~~h---------------------~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      -|..+-.-....-..+..|                     ..+|..-+...+.     +.++|=..+|.+.+||+-....
T Consensus       323 rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dk-----RhVlTkDa~gnv~lwDIl~~~~  397 (735)
T KOG0308|consen  323 RWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDK-----RHVLTKDAKGNVALWDILACVK  397 (735)
T ss_pred             ecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCc-----ceEeeecCCCCEEEEEeeeeee
Confidence            9976532110000000000                     0122222233333     5899999999999999876654

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.5e-28  Score=209.52  Aligned_cols=276  Identities=21%  Similarity=0.316  Sum_probs=221.4

Q ss_pred             CccCCeEEEEee---CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCC
Q 013717           96 GHKLPIGCIAVH---HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLT  170 (437)
Q Consensus        96 ~h~~~V~~l~~~---~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~  170 (437)
                      .....|.+++|+   +.-+|+.+.-.+.||+..+  ....+++   ......|.+++|-.|+  +++|...|.|+++|..
T Consensus        24 ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~--~~~~k~~---srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k   98 (487)
T KOG0310|consen   24 KEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVT--RSVRKTF---SRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK   98 (487)
T ss_pred             cccCcceeEecCCCCCCceEEecccEEEEEecch--hhhhhhH---HhhccceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence            445789999999   4556666655899999888  3444444   3467889999998554  7788889999999966


Q ss_pred             CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEE
Q 013717          171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLES  247 (437)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~  247 (437)
                      +....+.+                              .+|+.+|..+.|++   ..+++|+.|+.+++||+.+......
T Consensus        99 ~r~iLR~~------------------------------~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~  148 (487)
T KOG0310|consen   99 SRVILRQL------------------------------YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAE  148 (487)
T ss_pred             cHHHHHHH------------------------------hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEE
Confidence            53333322                              36999999999998   7889999999999999999887668


Q ss_pred             eecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717          248 IKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD  325 (437)
Q Consensus       248 ~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (437)
                      +.+|++.|.|.+|+|...  +++|+.||.|++||++...   ..+.++ .|..+|..+.+-|.|..|++++. ..|+|||
T Consensus       149 l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWD  223 (487)
T KOG0310|consen  149 LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWD  223 (487)
T ss_pred             ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC---ceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEE
Confidence            889999999999999765  9999999999999988654   344455 48999999999999999999875 5699999


Q ss_pred             CCCCccceEEeeeecccccceEEEEeeC--CEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCce
Q 013717          326 REDSANHMVVTGALRGHGKAILCLINVA--GLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGV  403 (437)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~  403 (437)
                      +-++...   ......|...|+|+.+..  ..|++|+-|+.+++||+.+   ++.+..+. ..++|.+|+.+|++.    
T Consensus       224 l~~G~ql---l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~---~Kvv~s~~-~~~pvLsiavs~dd~----  292 (487)
T KOG0310|consen  224 LTTGGQL---LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN---YKVVHSWK-YPGPVLSIAVSPDDQ----  292 (487)
T ss_pred             ecCCcee---hhhhhcccceEEEEEeecCCceEeecccccceEEEEccc---eEEEEeee-cccceeeEEecCCCc----
Confidence            9866543   333445999999999876  5999999999999999775   33666555 678999999999874    


Q ss_pred             EEEEEecCCCcEEEEeeccC
Q 013717          404 VSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       404 ~~l~s~~~dg~i~iw~~~~~  423 (437)
                       .++.|-.||.+.+=+....
T Consensus       293 -t~viGmsnGlv~~rr~~~k  311 (487)
T KOG0310|consen  293 -TVVIGMSNGLVSIRRREVK  311 (487)
T ss_pred             -eEEEecccceeeeehhhcc
Confidence             6999999999888765443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.9e-28  Score=196.71  Aligned_cols=257  Identities=19%  Similarity=0.296  Sum_probs=196.0

Q ss_pred             eeec-CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe----EEEEecCCeEE
Q 013717           92 SVQL-GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK----IFTAHQDCKIR  165 (437)
Q Consensus        92 ~~~~-~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----l~s~~~dg~i~  165 (437)
                      ...+ .|.++|+|+|.++.++|+|+.| +|+|||+...  ..+..+   ..|.+.|+++.|.+..    |++|+.||.|.
T Consensus        36 lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~--~qlg~l---l~HagsitaL~F~~~~S~shLlS~sdDG~i~  110 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKR--KQLGIL---LSHAGSITALKFYPPLSKSHLLSGSDDGHII  110 (362)
T ss_pred             cccccccccceeEEEecceeEeccCCCCcEEEEeccch--hhhcce---eccccceEEEEecCCcchhheeeecCCCcEE
Confidence            3445 8999999999999999999999 9999999883  333333   5699999999999543    99999999999


Q ss_pred             EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc
Q 013717          166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR  243 (437)
Q Consensus       166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~  243 (437)
                      +|+...-.....+                              .+|.+.|+.++++|  ++.++.+.|+.++.||+-+|+
T Consensus       111 iw~~~~W~~~~sl------------------------------K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen  111 IWRVGSWELLKSL------------------------------KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR  160 (362)
T ss_pred             EEEcCCeEEeeee------------------------------cccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence            9999876544433                              36999999999999  788889999999999999998


Q ss_pred             eEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEE
Q 013717          244 CLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSIL  322 (437)
Q Consensus       244 ~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  322 (437)
                      .-..++ -....+.+.|+|.|. ++.+.. ..|-+|.+....    ....+. ....+.++.|. ++..|++|..|+.|.
T Consensus       161 ~a~v~~-L~~~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~----v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~  232 (362)
T KOG0294|consen  161 VAFVLN-LKNKATLVSWSPQGDHFVVSGR-NKIDIYQLDNAS----VFREIE-NPKRILCATFL-DGSELLVGGDNEWIS  232 (362)
T ss_pred             cceeec-cCCcceeeEEcCCCCEEEEEec-cEEEEEecccHh----Hhhhhh-ccccceeeeec-CCceEEEecCCceEE
Confidence            766665 233345599999999 666655 468899765432    222222 22457777776 566899999999999


Q ss_pred             EEECCCCccceEEeeeecccccceEEEEeeCC----EEEEEeCCCcEEEeeCCCCC--CeeeeeeecCCCCCeeEEEEEc
Q 013717          323 VWDREDSANHMVVTGALRGHGKAILCLINVAG----LLMSGSADRTVRIWQRGSDG--RFGCLAVLEGHTKPVKSLTAVT  396 (437)
Q Consensus       323 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~h~~~v~~l~~~~  396 (437)
                      +||..+..    ....+.+|...|-.+.+..+    +|++++.||.|+|||++...  +..++..+.- ...++|+...-
T Consensus       233 ~~D~ds~~----~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~~~  307 (362)
T KOG0294|consen  233 LKDTDSDT----PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRVKL  307 (362)
T ss_pred             EeccCCCc----cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeeehh
Confidence            99998754    44557789999999885433    99999999999999998753  2234444443 45666666543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=3e-28  Score=195.46  Aligned_cols=269  Identities=18%  Similarity=0.264  Sum_probs=209.5

Q ss_pred             CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCC-ceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEe
Q 013717           96 GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGT-TWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQ  168 (437)
Q Consensus        96 ~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd  168 (437)
                      .-.+.|.+|+|+   ..+++.+|-| +||+|+++.. ....    .....|.++|.+++|++++  +++|+.|+.+++||
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~----ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD  100 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP----KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD  100 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc----hhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence            567889999999   5777788889 9999999873 2222    2235799999999999765  99999999999999


Q ss_pred             CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEEEECCCcEEEEECCCcce
Q 013717          169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYSVSWDKSLKIWRASDLRC  244 (437)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~  244 (437)
                      +.+++....-                               .|..+|..+.|-+    ..|++|+.|++|+.||.+...+
T Consensus       101 L~S~Q~~~v~-------------------------------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p  149 (347)
T KOG0647|consen  101 LASGQVSQVA-------------------------------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP  149 (347)
T ss_pred             ccCCCeeeee-------------------------------ecccceeEEEEecCCCcceeEecccccceeecccCCCCe
Confidence            9998654433                               4999999999976    5789999999999999999988


Q ss_pred             EEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 013717          245 LESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVW  324 (437)
Q Consensus       245 ~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  324 (437)
                      +.++. ..+.+.++..- ...++++..++.|.+|+++....+.+.+..  ..+-.+++|+..+|....+.|+-+|.+.|.
T Consensus       150 v~t~~-LPeRvYa~Dv~-~pm~vVata~r~i~vynL~n~~te~k~~~S--pLk~Q~R~va~f~d~~~~alGsiEGrv~iq  225 (347)
T KOG0647|consen  150 VATLQ-LPERVYAADVL-YPMAVVATAERHIAVYNLENPPTEFKRIES--PLKWQTRCVACFQDKDGFALGSIEGRVAIQ  225 (347)
T ss_pred             eeeee-ccceeeehhcc-CceeEEEecCCcEEEEEcCCCcchhhhhcC--cccceeeEEEEEecCCceEeeeecceEEEE
Confidence            88886 55667777653 223788889999999999765543333221  244568999999998888999999999999


Q ss_pred             ECCCCccceEEeeeecccc---------cceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEE
Q 013717          325 DREDSANHMVVTGALRGHG---------KAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLT  393 (437)
Q Consensus       325 d~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~  393 (437)
                      .+..+.....+  .++.|.         -.|.+++|++.  .|+|++.||++.+||-....   .+.....|..+|++..
T Consensus       226 ~id~~~~~~nF--tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~---kLk~s~~~~qpItcc~  300 (347)
T KOG0647|consen  226 YIDDPNPKDNF--TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART---KLKTSETHPQPITCCS  300 (347)
T ss_pred             ecCCCCccCce--eEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh---hhhccCcCCCccceeE
Confidence            99876322111  122222         34677888876  99999999999999987655   6777788999999999


Q ss_pred             EEccCCCCceEEEEEecCC
Q 013717          394 AVTEEGQNGVVSVFSGSLD  412 (437)
Q Consensus       394 ~~~~~~~~~~~~l~s~~~d  412 (437)
                      |+.+|.-    +..+.|.|
T Consensus       301 fn~~G~i----faYA~gYD  315 (347)
T KOG0647|consen  301 FNRNGSI----FAYALGYD  315 (347)
T ss_pred             ecCCCCE----EEEEeecc
Confidence            9999863    55566655

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=1.9e-28  Score=210.12  Aligned_cols=278  Identities=18%  Similarity=0.227  Sum_probs=210.5

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceee---eec--CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCce--
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINS---VQL--GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTW--  129 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~---~~~--~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~--  129 (437)
                      .++.+.|+...+++++.|-++.+||.+.-....   +.+  .....|.++.|+  |+.|++.+.. ..+|+|.....+  
T Consensus       171 sal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e  250 (641)
T KOG0772|consen  171 SALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVE  250 (641)
T ss_pred             EEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeee
Confidence            577899999999999999999999995433222   223  567789999999  8888888878 999999887322  


Q ss_pred             -----eeeeccccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCccccc-ccccCccccceeeecCCCCeeEE
Q 013717          130 -----TSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKL-KTTLPTVNDRLLRFMLPNSYVTV  200 (437)
Q Consensus       130 -----~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  200 (437)
                           +.+..+..-++|...++|-+|.|..   +++++.||++|+||++..+.... +....                  
T Consensus       251 ~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~------------------  312 (641)
T KOG0772|consen  251 FSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP------------------  312 (641)
T ss_pred             eeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc------------------
Confidence                 2233334448999999999999764   99999999999999987653222 11111                  


Q ss_pred             eeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc--eEEE-eecccc--cEEEEEEecCCe-EEEEeCC
Q 013717          201 RRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR--CLES-IKAHED--AVNAVAVSAGGT-VYTGSAD  272 (437)
Q Consensus       201 ~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~--~~~~-~~~~~~--~v~~~~~~~~~~-l~~~~~d  272 (437)
                             ..+..-+++.++|++  +.||+|+.||.|.+|+.....  .... -..|..  .|+||.|+++|+ |++-+.|
T Consensus       313 -------~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D  385 (641)
T KOG0772|consen  313 -------AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFD  385 (641)
T ss_pred             -------CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCC
Confidence                   013455788999998  889999999999999975432  2222 236766  899999999999 9999999


Q ss_pred             CeEEEecCCCCcccceeeEEeeC--ccccEEEEEEccCCCEEEEEeC------CCcEEEEECCCCccceEEeeeeccccc
Q 013717          273 RKIRVWAKPFNEKRHALIATLEK--HKSAVNALALSDDGTVLFSGAC------DRSILVWDREDSANHMVVTGALRGHGK  344 (437)
Q Consensus       273 g~v~iwd~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~  344 (437)
                      +++++||++...   +++....+  ..-+-+.++|+|+.++|++|..      .|.+.+||..+...    ...+.-...
T Consensus       386 ~tLKvWDLrq~k---kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~----v~ki~i~~a  458 (641)
T KOG0772|consen  386 DTLKVWDLRQFK---KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT----VYKIDISTA  458 (641)
T ss_pred             Cceeeeeccccc---cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceee----EEEecCCCc
Confidence            999999998654   23333333  2335678899999999999864      57899999876543    333444477


Q ss_pred             ceEEEEeeCC--EEEEEeCCCcEEEee
Q 013717          345 AILCLINVAG--LLMSGSADRTVRIWQ  369 (437)
Q Consensus       345 ~i~~~~~~~~--~l~~~~~dg~i~iwd  369 (437)
                      .|..+.|++.  .|++|+.||.+++|-
T Consensus       459 Svv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  459 SVVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             eEEEEeecchhhheeeecCCCceEEEE
Confidence            7888899987  889999999999874

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.4e-29  Score=219.72  Aligned_cols=283  Identities=19%  Similarity=0.363  Sum_probs=220.5

Q ss_pred             ccCCeE---EEEee---CCEEEEEecC-eEEEEeCCCCceeeeec-cccCCCCcccEEEEEEeCCe--EEEEecCCeEEE
Q 013717           97 HKLPIG---CIAVH---HNFLYAASSH-EINVYDRTGTTWTSINT-FNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRV  166 (437)
Q Consensus        97 h~~~V~---~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~i  166 (437)
                      |...|.   ++..+   ++||++|+.| .|++|+........... ...++.|...|+.++...+.  |++++.|-+|++
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~   99 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV   99 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence            444444   44444   7899999999 99999987643221111 22337799999999988544  999999999999


Q ss_pred             EeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe-CC--CeEEEEECCCcEEEEECCCc-
Q 013717          167 WQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV-NN--GLIYSVSWDKSLKIWRASDL-  242 (437)
Q Consensus       167 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~--~~l~~~~~dg~i~iwd~~~~-  242 (437)
                      |+..... ..+..                           .+..|.+.|.|+++ .+  ..+++|+-|+.|.+||+.++ 
T Consensus       100 W~~~~~~-~~c~s---------------------------tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~  151 (735)
T KOG0308|consen  100 WNAHKDN-TFCMS---------------------------TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGT  151 (735)
T ss_pred             eecccCc-chhHh---------------------------hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcc
Confidence            9988663 12222                           22369999999999 33  89999999999999999977 


Q ss_pred             -ceEEE--------ee-cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCE
Q 013717          243 -RCLES--------IK-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTV  311 (437)
Q Consensus       243 -~~~~~--------~~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  311 (437)
                       +.+..        +. ++...|++++.++.|. +++|+.++.|++||.++..    .+..+++|...|..+..++||+.
T Consensus       152 ~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~----kimkLrGHTdNVr~ll~~dDGt~  227 (735)
T KOG0308|consen  152 ATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK----KIMKLRGHTDNVRVLLVNDDGTR  227 (735)
T ss_pred             hhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccccc----ceeeeeccccceEEEEEcCCCCe
Confidence             22222        22 6788999999999999 9999999999999887664    56677799999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCe
Q 013717          312 LFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPV  389 (437)
Q Consensus       312 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v  389 (437)
                      +++++.||+|++||+...+    ....+..|...++++..++.  .+++|+.||.|..=|+++...  + ..+-....+|
T Consensus       228 ~ls~sSDgtIrlWdLgqQr----Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~--~-tlick~daPv  300 (735)
T KOG0308|consen  228 LLSASSDGTIRLWDLGQQR----CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK--S-TLICKEDAPV  300 (735)
T ss_pred             EeecCCCceEEeeeccccc----eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchh--h-eEeecCCCch
Confidence            9999999999999997655    44456778888999988877  899999999999999998542  2 2233345678


Q ss_pred             eEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          390 KSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       390 ~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      ..+......+.     +..+..|+.|+-|..+..
T Consensus       301 ~~l~~~~~~~~-----~WvtTtds~I~rW~~~~~  329 (735)
T KOG0308|consen  301 LKLHLHEHDNS-----VWVTTTDSSIKRWKLEPD  329 (735)
T ss_pred             hhhhhccccCC-----ceeeeccccceecCCccc
Confidence            88877755543     578889999999987644

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=8e-28  Score=194.47  Aligned_cols=298  Identities=18%  Similarity=0.239  Sum_probs=210.2

Q ss_pred             eec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe---EEEEecCCeEE
Q 013717           93 VQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIR  165 (437)
Q Consensus        93 ~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~  165 (437)
                      ..| ||.+.|++++|+  |.+||+++.| .|++|+++....+.-+.+.. .-.-+..+.+.|.||.   ++++-...+++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            355 999999999999  9999999999 99999998843333332221 1123467889999886   66666778899


Q ss_pred             EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc
Q 013717          166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR  243 (437)
Q Consensus       166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~  243 (437)
                      +|.+...+.......                  .+......+-..|.-.+..+-...  .+|++++.|..|.+|+++ |+
T Consensus       159 vyk~~K~~dG~~~~~------------------~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq  219 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHH------------------FVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ  219 (420)
T ss_pred             EEEeeecccCCCCcc------------------cccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc
Confidence            998764432111000                  001111112234666666665544  899999999999999998 89


Q ss_pred             eEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCc----ccceeeEEeeCccccEEEEEEccCCCEEEEEeCC
Q 013717          244 CLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNE----KRHALIATLEKHKSAVNALALSDDGTVLFSGACD  318 (437)
Q Consensus       244 ~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  318 (437)
                      .+..+......-+..+.+|+|+ +++++.--.|++|.+-...    +.-.....+++|.+.|..++|+++.+.+++.+.|
T Consensus       220 ~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkD  299 (420)
T KOG2096|consen  220 LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKD  299 (420)
T ss_pred             eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecC
Confidence            9998887777778889999999 8888889999999764222    1223455788999999999999999999999999


Q ss_pred             CcEEEEECCCC-------ccceEEeeeecccccce--EEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCe
Q 013717          319 RSILVWDREDS-------ANHMVVTGALRGHGKAI--LCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPV  389 (437)
Q Consensus       319 g~i~i~d~~~~-------~~~~~~~~~~~~~~~~i--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v  389 (437)
                      |+++|||++-.       +........+....+.-  +.++++++.|+.+. ...+++|..++++...++.  ..|...|
T Consensus       300 G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e--~~h~~~I  376 (420)
T KOG2096|consen  300 GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELE--DIHSTTI  376 (420)
T ss_pred             CcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHH--HhhcCce
Confidence            99999998521       10111111111122222  45556666666544 4469999999877433332  4588999


Q ss_pred             eEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717          390 KSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       390 ~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~  419 (437)
                      .+|+|++++     ++++|+| |..+++..
T Consensus       377 s~is~~~~g-----~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  377 SSISYSSDG-----KYIATCG-DRYVRVIR  400 (420)
T ss_pred             eeEEecCCC-----cEEeeec-ceeeeeec
Confidence            999999998     4788887 67888876

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.2e-27  Score=192.74  Aligned_cols=266  Identities=18%  Similarity=0.264  Sum_probs=206.9

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCC
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTP  171 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~  171 (437)
                      .-.+.|.++.|+  ++.|+.++-| .+++||.....  ....+    .|..++.+++|.++. +++|+.||.|+.+|+++
T Consensus        11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~--l~~~~----~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~   84 (323)
T KOG1036|consen   11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS--LKLKF----KHGAPLLDCAFADESTIVTGGLDGQVRRYDLNT   84 (323)
T ss_pred             CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh--hhhhe----ecCCceeeeeccCCceEEEeccCceEEEEEecC
Confidence            446789999999  5666666677 99999999852  23332    499999999999765 99999999999999998


Q ss_pred             CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee
Q 013717          172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK  249 (437)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~  249 (437)
                      +......                               .|..+|.|+...+  +.+++|+.|++|++||.+.......+.
T Consensus        85 ~~~~~ig-------------------------------th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d  133 (323)
T KOG1036|consen   85 GNEDQIG-------------------------------THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD  133 (323)
T ss_pred             Ccceeec-------------------------------cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc
Confidence            8654433                               4999999999997  999999999999999998765555554


Q ss_pred             cccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 013717          250 AHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDS  329 (437)
Q Consensus       250 ~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (437)
                       ....|.++... +..|++|+.+..+.+||++......  ...-...+-.+.++++.|++.-+++++-||.|.+=.++..
T Consensus       134 -~~kkVy~~~v~-g~~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s  209 (323)
T KOG1036|consen  134 -QGKKVYCMDVS-GNRLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDS  209 (323)
T ss_pred             -cCceEEEEecc-CCEEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCc
Confidence             34479888875 4459999999999999998654322  1122234567999999998888999999999998777665


Q ss_pred             ccceEEeeeecccc---------cceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccC
Q 013717          330 ANHMVVTGALRGHG---------KAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEE  398 (437)
Q Consensus       330 ~~~~~~~~~~~~~~---------~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  398 (437)
                      .........++.|.         -+|.+++|++-  .|+||+.||.|.+||+.+.+   .+..+......|..++|+.++
T Consensus       210 ~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK---rl~q~~~~~~SI~slsfs~dG  286 (323)
T KOG1036|consen  210 EEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK---RLKQLAKYETSISSLSFSMDG  286 (323)
T ss_pred             hHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchh---hhhhccCCCCceEEEEeccCC
Confidence            22222222333332         36788888876  89999999999999999877   566666667789999999998


Q ss_pred             CCCceEEEEEec
Q 013717          399 GQNGVVSVFSGS  410 (437)
Q Consensus       399 ~~~~~~~l~s~~  410 (437)
                      .     .|+.++
T Consensus       287 ~-----~LAia~  293 (323)
T KOG1036|consen  287 S-----LLAIAS  293 (323)
T ss_pred             C-----eEEEEe
Confidence            6     577665

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.1e-27  Score=202.75  Aligned_cols=290  Identities=21%  Similarity=0.312  Sum_probs=227.6

Q ss_pred             eeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCcee--eeec----------cccC-CCCcccEEEEEEeCCe
Q 013717           92 SVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWT--SINT----------FNDN-DSSSGSVKSVTFCDGK  154 (437)
Q Consensus        92 ~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~--~~~~----------~~~~-~~h~~~v~~l~~~~~~  154 (437)
                      ...+ .|.-+|.|++++  +.+.++++.+ +|.=|++.++...  ....          +... ..|...|.+++.++++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            3444 899999999999  7899999999 9999999886422  1111          1111 3788999999999776


Q ss_pred             --EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC
Q 013717          155 --IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW  230 (437)
Q Consensus       155 --l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~  230 (437)
                        |++|+.|..|.||+.++.+..+.+                              .+|.+.|.+++|-.  ..+++++.
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~------------------------------~ghr~~V~~L~fr~gt~~lys~s~  264 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVF------------------------------KGHRGAVSSLAFRKGTSELYSASA  264 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhcc------------------------------cccccceeeeeeecCccceeeeec
Confidence              999999999999999988755443                              47999999999976  89999999


Q ss_pred             CCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC
Q 013717          231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG  309 (437)
Q Consensus       231 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  309 (437)
                      |+.|++|+++....+.++.+|.+.|..|....-++ +-+|+.|+++++|++...     ....+.++.+.+-|++|-. .
T Consensus       265 Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-----sqlifrg~~~sidcv~~In-~  338 (479)
T KOG0299|consen  265 DRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-----SQLIFRGGEGSIDCVAFIN-D  338 (479)
T ss_pred             CCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-----ceeeeeCCCCCeeeEEEec-c
Confidence            99999999999999999999999999999888888 455559999999998432     3445678888999999985 4


Q ss_pred             CEEEEEeCCCcEEEEECCCCccceEEeeeec--------ccccceEEEEeeC--CEEEEEeCCCcEEEeeCCCCC-Ceee
Q 013717          310 TVLFSGACDRSILVWDREDSANHMVVTGALR--------GHGKAILCLINVA--GLLMSGSADRTVRIWQRGSDG-RFGC  378 (437)
Q Consensus       310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-~~~~  378 (437)
                      ..+++|+.||.|.+|++...+..+.......        .+..+|++++..+  +++++|+.+|.|++|.+..+- ...+
T Consensus       339 ~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~  418 (479)
T KOG0299|consen  339 EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINL  418 (479)
T ss_pred             cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccce
Confidence            5899999999999999987665544332211        1123777777664  499999999999999998763 2345


Q ss_pred             eeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717          379 LAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       379 ~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                      +..+. -.+.|++|+|++++..    +++..+....+--|-...
T Consensus       419 l~~ls-~~GfVNsl~f~~sgk~----ivagiGkEhRlGRW~~~k  457 (479)
T KOG0299|consen  419 LYSLS-LVGFVNSLAFSNSGKR----IVAGIGKEHRLGRWWCLK  457 (479)
T ss_pred             eeecc-cccEEEEEEEccCCCE----EEEecccccccceeeEee
Confidence            55554 5678999999999863    666667776665565443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=1.8e-28  Score=207.43  Aligned_cols=254  Identities=22%  Similarity=0.282  Sum_probs=203.3

Q ss_pred             eecCccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeeee-----ccccCCCCcccEEEEEEeCC---eEEEEec
Q 013717           93 VQLGHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSIN-----TFNDNDSSSGSVKSVTFCDG---KIFTAHQ  160 (437)
Q Consensus        93 ~~~~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~-----~~~~~~~h~~~v~~l~~~~~---~l~s~~~  160 (437)
                      +.+.|.+.|+.+.+-   ...+|+++.+ .|.|||...-......     .-..+.+|...=.+|+|+..   .|++++.
T Consensus       119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~  198 (422)
T KOG0264|consen  119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD  198 (422)
T ss_pred             EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence            334899999998887   6788888888 9999998763111111     00022578887788999843   3999999


Q ss_pred             CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEE
Q 013717          161 DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIW  237 (437)
Q Consensus       161 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iw  237 (437)
                      |++|++||+.........                       ......+.+|+..|..++|++   .++++++.|+.+.||
T Consensus       199 d~~i~lwdi~~~~~~~~~-----------------------~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iw  255 (422)
T KOG0264|consen  199 DHTICLWDINAESKEDKV-----------------------VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIW  255 (422)
T ss_pred             CCcEEEEeccccccCCcc-----------------------ccceEEeecCCcceehhhccccchhhheeecCCCeEEEE
Confidence            999999999866432110                       122345678999999999998   899999999999999


Q ss_pred             ECC--CcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccC-CCEE
Q 013717          238 RAS--DLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD-GTVL  312 (437)
Q Consensus       238 d~~--~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l  312 (437)
                      |++  +.++.....+|.+.|+|++|+|-+.  ||+|+.|++|.+||++.-.   ..+..+.+|...|..|.|+|. ...|
T Consensus       256 D~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~---~~lh~~e~H~dev~~V~WSPh~etvL  332 (422)
T KOG0264|consen  256 DTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN---KPLHTFEGHEDEVFQVEWSPHNETVL  332 (422)
T ss_pred             EcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc---cCceeccCCCcceEEEEeCCCCCcee
Confidence            999  5666677789999999999999766  9999999999999998544   378889999999999999995 4588


Q ss_pred             EEEeCCCcEEEEECCCCcc----------ceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCC
Q 013717          313 FSGACDRSILVWDREDSAN----------HMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       313 ~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~  372 (437)
                      ++++.|+.+.|||+..-..          +..+.....||...|..++|++.   .|++.++|+.+.||+...
T Consensus       333 ASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  333 ASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             EecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            9999999999999974221          22344567899999999999987   899999999999998763

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6.6e-29  Score=193.40  Aligned_cols=248  Identities=20%  Similarity=0.281  Sum_probs=200.3

Q ss_pred             CCcccEEEEEE--eCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEE
Q 013717          140 SSSGSVKSVTF--CDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTG  217 (437)
Q Consensus       140 ~h~~~v~~l~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  217 (437)
                      .|...|..+..  .+.+|+|++.|++|+|+.++.......+..                           +.+|.++|..
T Consensus         9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~---------------------------L~Gh~GPVwq   61 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAE---------------------------LTGHSGPVWK   61 (299)
T ss_pred             hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeE---------------------------ecCCCCCeeE
Confidence            58888876654  577899999999999999987765333333                           3589999999


Q ss_pred             EEeCC----CeEEEEECCCcEEEEECCCcce--EEEeecccccEEEEEEecCCe---EEEEeCCCeEEEecCCCCcccce
Q 013717          218 LAVNN----GLIYSVSWDKSLKIWRASDLRC--LESIKAHEDAVNAVAVSAGGT---VYTGSADRKIRVWAKPFNEKRHA  288 (437)
Q Consensus       218 ~~~~~----~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~---l~~~~~dg~v~iwd~~~~~~~~~  288 (437)
                      ++|..    .+|++++.||.|.||.-.+++-  ......|...|++++|-|.+.   |++++.||.|.|.+.+.. ....
T Consensus        62 v~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~-g~w~  140 (299)
T KOG1332|consen   62 VAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS-GGWT  140 (299)
T ss_pred             EeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC-CCcc
Confidence            99954    8999999999999999887743  344558999999999998765   899999999999998755 3334


Q ss_pred             eeEEeeCccccEEEEEEccC---C-----------CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC
Q 013717          289 LIATLEKHKSAVNALALSDD---G-----------TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG  354 (437)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~---~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  354 (437)
                      ..+....|.-.+++++|.|-   |           +.|++|+.|..|+||+...+  ...+...+.+|...|..+++.|.
T Consensus       141 t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~  218 (299)
T KOG1332|consen  141 TSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPS  218 (299)
T ss_pred             chhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccc
Confidence            44556689999999999995   5           67999999999999999886  33455558899999998888765


Q ss_pred             ------EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717          355 ------LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       355 ------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                            +|++++.||++.||..+.....-....++.....+..+.|+..++     +|+.++.|+.|.+|.-..
T Consensus       219 ~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn-----~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  219 VGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN-----ILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             cCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecccc-----EEEEecCCcEEEEEEeCC
Confidence                  899999999999998774322223444555677899999999986     788889999999998654

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=1.1e-26  Score=214.08  Aligned_cols=249  Identities=13%  Similarity=0.253  Sum_probs=181.3

Q ss_pred             EecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC---eEEEEecCCeEEEEeCCCCccc-ccccccCccccce
Q 013717          114 ASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG---KIFTAHQDCKIRVWQLTPTKHH-KLKTTLPTVNDRL  188 (437)
Q Consensus       114 ~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~  188 (437)
                      |+.. .|++|+....  ..+..+   .+|.+.|.+++|+|+   .|++|+.||+|++||+.++... ....         
T Consensus        50 GG~~gvI~L~~~~r~--~~v~~L---~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~---------  115 (568)
T PTZ00420         50 GGLIGAIRLENQMRK--PPVIKL---KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK---------  115 (568)
T ss_pred             CCceeEEEeeecCCC--ceEEEE---cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc---------
Confidence            4445 8999988763  344444   689999999999964   3999999999999999864311 0000         


Q ss_pred             eeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe
Q 013717          189 LRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT  265 (437)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  265 (437)
                                    .....+.+|...|.+++|+|   ..+++++.|+.|+|||+++++.+..+. +...|.+++|+|+|.
T Consensus       116 --------------~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~  180 (568)
T PTZ00420        116 --------------DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN  180 (568)
T ss_pred             --------------cceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC
Confidence                          01123457999999999999   356789999999999999998877775 567899999999999


Q ss_pred             -EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEE-----EEEccCCCEEEEEeCCC----cEEEEECCCCccceEE
Q 013717          266 -VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNA-----LALSDDGTVLFSGACDR----SILVWDREDSANHMVV  335 (437)
Q Consensus       266 -l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~  335 (437)
                       |++++.|+.|++||++...    .+..+.+|.+.+..     ..|++++.+|++++.|+    .|+|||++........
T Consensus       181 lLat~s~D~~IrIwD~Rsg~----~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~  256 (568)
T PTZ00420        181 LLSGTCVGKHMHIIDPRKQE----IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVT  256 (568)
T ss_pred             EEEEEecCCEEEEEECCCCc----EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEE
Confidence             8888899999999987653    56677788775433     33568889999988774    7999999864333222


Q ss_pred             eeeecccccceEEE-Ee-eCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccC
Q 013717          336 TGALRGHGKAILCL-IN-VAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEE  398 (437)
Q Consensus       336 ~~~~~~~~~~i~~~-~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  398 (437)
                       ..+..+...+..+ .. .+.++++|+.|+.|++|++..+. ...+..+. +..++.+++|.|..
T Consensus       257 -~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~-s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        257 -MSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYK-SCSPFRSFGFLPKQ  318 (568)
T ss_pred             -EEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccc-cCCCccceEEcccc
Confidence             1233333333222 22 24488999999999999998653 23333333 66789999999975

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=5.3e-27  Score=216.27  Aligned_cols=200  Identities=14%  Similarity=0.228  Sum_probs=151.2

Q ss_pred             ecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcc--------eEEEeecccccEEEEEEecCCe--EEEEeCCCeE
Q 013717          209 IEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLR--------CLESIKAHEDAVNAVAVSAGGT--VYTGSADRKI  275 (437)
Q Consensus       209 ~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v  275 (437)
                      .+|...|.+++|+|   .+|++|+.||.|++||+.++.        .+..+.+|...|.+++|+|++.  +++++.|+.|
T Consensus        71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtI  150 (568)
T PTZ00420         71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFV  150 (568)
T ss_pred             cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeE
Confidence            47999999999997   689999999999999997642        3446678999999999999886  5789999999


Q ss_pred             EEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEE-----E
Q 013717          276 RVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCL-----I  350 (437)
Q Consensus       276 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~-----~  350 (437)
                      ++||++...    ....+. +...|.+++|+|+|.+|++++.|+.|+|||+++++.    ...+.+|.+.+.+.     .
T Consensus       151 rIWDl~tg~----~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~----i~tl~gH~g~~~s~~v~~~~  221 (568)
T PTZ00420        151 NIWDIENEK----RAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI----ASSFHIHDGGKNTKNIWIDG  221 (568)
T ss_pred             EEEECCCCc----EEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE----EEEEecccCCceeEEEEeee
Confidence            999997654    333443 557899999999999999999999999999998763    34456777654221     1


Q ss_pred             --eeCCEEEEEeCCC----cEEEeeCCCCCCeeeeeee--cCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717          351 --NVAGLLMSGSADR----TVRIWQRGSDGRFGCLAVL--EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       351 --~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                        .++++|++++.|+    +|+|||++....  ++...  ..+.+.+... +.++.+    .++++|+.|+.|++|++..
T Consensus       222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~--pl~~~~ld~~~~~L~p~-~D~~tg----~l~lsGkGD~tIr~~e~~~  294 (568)
T PTZ00420        222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTS--ALVTMSIDNASAPLIPH-YDESTG----LIYLIGKGDGNCRYYQHSL  294 (568)
T ss_pred             EcCCCCEEEEEEcCCCCccEEEEEECCCCCC--ceEEEEecCCccceEEe-eeCCCC----CEEEEEECCCeEEEEEccC
Confidence              3445888877764    799999996442  44433  3333333333 334333    4899999999999999976


Q ss_pred             CC
Q 013717          423 SC  424 (437)
Q Consensus       423 ~~  424 (437)
                      +.
T Consensus       295 ~~  296 (568)
T PTZ00420        295 GS  296 (568)
T ss_pred             Cc
Confidence            53

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=6.2e-29  Score=194.20  Aligned_cols=266  Identities=20%  Similarity=0.276  Sum_probs=218.3

Q ss_pred             ccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCC
Q 013717           65 LPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDS  140 (437)
Q Consensus        65 ~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~  140 (437)
                      .|..-.+.+.+.||.--+-+-+ ...-+-+| ||.+.|.+...+  .-..|+++.| +-+|||.-++  ..+..+    .
T Consensus        26 tp~g~flisa~kd~~pmlr~g~-tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tg--delhsf----~   98 (334)
T KOG0278|consen   26 TPDGYFLISASKDGKPMLRNGD-TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG--DELHSF----E   98 (334)
T ss_pred             CCCceEEEEeccCCCchhccCC-CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhh--hhhhhh----h
Confidence            3455567788888766554433 35566777 999999999998  5677888899 9999999985  556665    5


Q ss_pred             CcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717          141 SSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL  218 (437)
Q Consensus       141 h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  218 (437)
                      |.--|.+++|+.+.  |++|+.+..+|++|++..+...                             ..+.+|.+.|..+
T Consensus        99 hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App-----------------------------~E~~ghtg~Ir~v  149 (334)
T KOG0278|consen   99 HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP-----------------------------KEISGHTGGIRTV  149 (334)
T ss_pred             hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc-----------------------------hhhcCCCCcceeE
Confidence            99999999999654  9999999999999998664221                             1224799999999


Q ss_pred             EeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCc
Q 013717          219 AVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKH  296 (437)
Q Consensus       219 ~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  296 (437)
                      .|..  +.+++.+.|++||+||.+++..++++. .+.+|+++.++++|++++-...+.|.+||...-    .+++.++ .
T Consensus       150 ~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf----~~lKs~k-~  223 (334)
T KOG0278|consen  150 LWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF----GLLKSYK-M  223 (334)
T ss_pred             EEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc----cceeecc-C
Confidence            9876  889998999999999999999999997 677899999999999999899999999987543    3444443 4


Q ss_pred             cccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCC
Q 013717          297 KSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~  374 (437)
                      ...|.+..++|+...+++|++|..++.||..++......   ..+|.++|.|+.|+++  ..++|++||+|++|....++
T Consensus       224 P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~---nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  224 PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY---NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             ccccccccccCCCceEEecCcceEEEEEeccCCceeeec---ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence            567899999999999999999999999999998754332   4789999999998866  89999999999999988766


Q ss_pred             C
Q 013717          375 R  375 (437)
Q Consensus       375 ~  375 (437)
                      .
T Consensus       301 ~  301 (334)
T KOG0278|consen  301 T  301 (334)
T ss_pred             c
Confidence            3

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=6.8e-29  Score=201.23  Aligned_cols=267  Identities=18%  Similarity=0.246  Sum_probs=226.1

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcce-------eeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCc
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCI-------NSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTT  128 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~-------~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~  128 (437)
                      ....|+|....+++.+-||-|.+|+......       ....+ -+.++|.|+.|+  ...||+|+.| .|+||.+.+| 
T Consensus       217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG-  295 (508)
T KOG0275|consen  217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG-  295 (508)
T ss_pred             hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc-
Confidence            4779999999999999999999999854322       22223 578999999999  7899999999 9999999995 


Q ss_pred             eeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccce
Q 013717          129 WTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKK  206 (437)
Q Consensus       129 ~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (437)
                       .+++.|.  ..|+..|+|+.|+.+.  +++++.|.++++--+.+++..+.+.                           
T Consensus       296 -~ClRrFd--rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr---------------------------  345 (508)
T KOG0275|consen  296 -QCLRRFD--RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR---------------------------  345 (508)
T ss_pred             -hHHHHhh--hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc---------------------------
Confidence             5666663  4799999999999554  9999999999999999998766654                           


Q ss_pred             eeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee--cccccEEEEEEecCCe--EEEEeCCCeEEEecC
Q 013717          207 LWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK--AHEDAVNAVAVSAGGT--VYTGSADRKIRVWAK  280 (437)
Q Consensus       207 ~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~  280 (437)
                         +|...|+...|.+  ..+++++.||+|++|+..+.+|+.+++  +..-+|+++-..|.+.  ++++...++|.+-++
T Consensus       346 ---GHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~  422 (508)
T KOG0275|consen  346 ---GHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM  422 (508)
T ss_pred             ---CccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec
Confidence               7999999999987  999999999999999999999999987  4566788988888776  999999999999876


Q ss_pred             CCCcccceeeEEeeC---ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--E
Q 013717          281 PFNEKRHALIATLEK---HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--L  355 (437)
Q Consensus       281 ~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~  355 (437)
                      ..     +.++.+..   ..+...+...+|.|.++.+.++|+.++.|.+.+++    +...+..|...+..+..++.  +
T Consensus       423 qG-----QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~----LE~tl~VhEkdvIGl~HHPHqNl  493 (508)
T KOG0275|consen  423 QG-----QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK----LERTLPVHEKDVIGLTHHPHQNL  493 (508)
T ss_pred             cc-----eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc----eeeeeecccccccccccCcccch
Confidence            53     35555542   34567778899999999999999999999998887    55666778888988887764  9


Q ss_pred             EEEEeCCCcEEEee
Q 013717          356 LMSGSADRTVRIWQ  369 (437)
Q Consensus       356 l~~~~~dg~i~iwd  369 (437)
                      |++-++||.+++|.
T Consensus       494 lAsYsEDgllKLWk  507 (508)
T KOG0275|consen  494 LASYSEDGLLKLWK  507 (508)
T ss_pred             hhhhcccchhhhcC
Confidence            99999999999994

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=9.6e-27  Score=213.68  Aligned_cols=253  Identities=14%  Similarity=0.208  Sum_probs=181.7

Q ss_pred             CcccEEEEEEeC--CeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717          141 SSGSVKSVTFCD--GKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL  218 (437)
Q Consensus       141 h~~~v~~l~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  218 (437)
                      |-..|.....++  ..+++++.+.....|+...+..........                 ........+.+|.+.|.++
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G-----------------~~~~~~~~l~GH~~~V~~v   81 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYG-----------------KLASNPPILLGQEGPIIDV   81 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccc-----------------cCCCCCceEeCCCCCEEEE
Confidence            334455444443  348888888888889876543111110000                 0001112456899999999


Q ss_pred             EeCC---CeEEEEECCCcEEEEECCCc-------ceEEEeecccccEEEEEEecCC-e-EEEEeCCCeEEEecCCCCccc
Q 013717          219 AVNN---GLIYSVSWDKSLKIWRASDL-------RCLESIKAHEDAVNAVAVSAGG-T-VYTGSADRKIRVWAKPFNEKR  286 (437)
Q Consensus       219 ~~~~---~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~dg~v~iwd~~~~~~~  286 (437)
                      +|+|   ++|++|+.|++|++||+.++       +.+..+.+|...|.+++|+|++ . |++|+.|+.|++||+...   
T Consensus        82 ~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg---  158 (493)
T PTZ00421         82 AFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG---  158 (493)
T ss_pred             EEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC---
Confidence            9987   68999999999999999765       3467788999999999999975 3 999999999999998754   


Q ss_pred             ceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccce-EEEEee--CCEEEEEe---
Q 013717          287 HALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI-LCLINV--AGLLMSGS---  360 (437)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i-~~~~~~--~~~l~~~~---  360 (437)
                       ..+..+..|...|.+++|+|+|.+|++++.|+.|++||+++++.    ...+.+|.... ..+.|.  ++.+++++   
T Consensus       159 -~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~----v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~  233 (493)
T PTZ00421        159 -KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI----VSSVEAHASAKSQRCLWAKRKDLIITLGCSK  233 (493)
T ss_pred             -eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE----EEEEecCCCCcceEEEEcCCCCeEEEEecCC
Confidence             35667788999999999999999999999999999999998763    33345565442 233343  34665543   


Q ss_pred             -CCCcEEEeeCCCCCCeeeeeeecCCC-CCeeEEEEEccCCCCceEEEEEec-CCCcEEEEeeccCCC
Q 013717          361 -ADRTVRIWQRGSDGRFGCLAVLEGHT-KPVKSLTAVTEEGQNGVVSVFSGS-LDGEIRAWQVSVSCP  425 (437)
Q Consensus       361 -~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~  425 (437)
                       .|+.|++||++...  .++.....+. ..+....|++++.     +|++++ .||.|++||+..+++
T Consensus       234 s~Dr~VklWDlr~~~--~p~~~~~~d~~~~~~~~~~d~d~~-----~L~lggkgDg~Iriwdl~~~~~  294 (493)
T PTZ00421        234 SQQRQIMLWDTRKMA--SPYSTVDLDQSSALFIPFFDEDTN-----LLYIGSKGEGNIRCFELMNERL  294 (493)
T ss_pred             CCCCeEEEEeCCCCC--CceeEeccCCCCceEEEEEcCCCC-----EEEEEEeCCCeEEEEEeeCCce
Confidence             47899999998755  2344443333 3455566777764     566666 599999999998764

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.8e-26  Score=178.03  Aligned_cols=278  Identities=19%  Similarity=0.255  Sum_probs=215.3

Q ss_pred             cceeeccccccccccCCCceeEEecC--------------CCcc-eeeeecCccCCeEEEEee--CCEEEEEecC-eEEE
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSA--------------SHLC-INSVQLGHKLPIGCIAVH--HNFLYAASSH-EINV  121 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~--------------~~~~-~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~v  121 (437)
                      -++.|+|...+.+.++...++++-..              .+.. .+.+...|.+.|+|.+|+  |+++++|+.| +|++
T Consensus        36 rav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~  115 (350)
T KOG0641|consen   36 RAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKV  115 (350)
T ss_pred             eeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEE
Confidence            47789999999998888888776543              1111 122222899999999999  9999999999 9999


Q ss_pred             EeCCCCceeeeeccccCCCCcccEEEEEEeCC-----e-EEEEe-cCCeEEEEeCCCCcccccccccCccccceeeecCC
Q 013717          122 YDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG-----K-IFTAH-QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLP  194 (437)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~-l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (437)
                      .-.+.........-..+.-|.+.|..++|.++     . |++++ .|..|.+-|...++....+                
T Consensus       116 l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~----------------  179 (350)
T KOG0641|consen  116 LPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL----------------  179 (350)
T ss_pred             EecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee----------------
Confidence            87765433333222222459999999999733     2 55543 4667777777776543333                


Q ss_pred             CCeeEEeeccceeeecCCCcEEEE-EeCCCeEEEEECCCcEEEEECCCcceEEEeec-------ccccEEEEEEecCCe-
Q 013717          195 NSYVTVRRHKKKLWIEHGDAVTGL-AVNNGLIYSVSWDKSLKIWRASDLRCLESIKA-------HEDAVNAVAVSAGGT-  265 (437)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~-  265 (437)
                                    .+|.+.|.++ .|+.-++++|+.|.+|++||++-..++.++..       ....|.++++.|.|+ 
T Consensus       180 --------------sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl  245 (350)
T KOG0641|consen  180 --------------SGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL  245 (350)
T ss_pred             --------------cCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce
Confidence                          3799999887 67889999999999999999998888887741       236799999999999 


Q ss_pred             EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccc
Q 013717          266 VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKA  345 (437)
Q Consensus       266 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  345 (437)
                      |++|-.|....+||++.+.    .++.+..|...|.++.|+|.-.|+++++.|..|++-|+...-...........|...
T Consensus       246 l~sg~~dssc~lydirg~r----~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk  321 (350)
T KOG0641|consen  246 LASGHADSSCMLYDIRGGR----MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDK  321 (350)
T ss_pred             eeeccCCCceEEEEeeCCc----eeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCc
Confidence            8999999999999998664    788999999999999999999999999999999999997542222222234568888


Q ss_pred             eEEEEeeCC--EEEEEeCCCcEEEeeCC
Q 013717          346 ILCLINVAG--LLMSGSADRTVRIWQRG  371 (437)
Q Consensus       346 i~~~~~~~~--~l~~~~~dg~i~iwd~~  371 (437)
                      +..+.|+++  -+++.+.|.++.+|-+.
T Consensus       322 ~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  322 AIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             eEEEEecCccceeeeccCcceEEEeccC
Confidence            888999887  78889999999999764

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=3.2e-27  Score=202.07  Aligned_cols=284  Identities=15%  Similarity=0.282  Sum_probs=223.6

Q ss_pred             eeeeecCccCCeEEEEee--CCEEEEEecCeEEEEeCCCCce-eeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeE
Q 013717           90 INSVQLGHKLPIGCIAVH--HNFLYAASSHEINVYDRTGTTW-TSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKI  164 (437)
Q Consensus        90 ~~~~~~~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i  164 (437)
                      +.+.++.|..-|.+++++  .++++||+.+.|+|||+..... ..+..+.. ......|+++...+++  |++|+.-.++
T Consensus       411 rq~~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdc-l~rdnyiRSckL~pdgrtLivGGeastl  489 (705)
T KOG0639|consen  411 RQINTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDC-LNRDNYIRSCKLLPDGRTLIVGGEASTL  489 (705)
T ss_pred             HhhhhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccc-cCcccceeeeEecCCCceEEecccccee
Confidence            345566899999999999  8999999999999999976421 22222211 1245678888888765  9999999999


Q ss_pred             EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc
Q 013717          165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL  242 (437)
Q Consensus       165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~  242 (437)
                      .|||+.......... +                           ......+.+++.++  +..+++..||.|.|||+.+.
T Consensus       490 siWDLAapTprikae-l---------------------------tssapaCyALa~spDakvcFsccsdGnI~vwDLhnq  541 (705)
T KOG0639|consen  490 SIWDLAAPTPRIKAE-L---------------------------TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ  541 (705)
T ss_pred             eeeeccCCCcchhhh-c---------------------------CCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc
Confidence            999998654221111 1                           01223566778888  88999999999999999999


Q ss_pred             ceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcE
Q 013717          243 RCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSI  321 (437)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  321 (437)
                      ..++.+++|.+.+.||.+++||. |.+|+-|++|+.||++.....    .. ....+.|.++..+|++.++++|-+++.+
T Consensus       542 ~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql----qq-hdF~SQIfSLg~cP~~dWlavGMens~v  616 (705)
T KOG0639|consen  542 TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL----QQ-HDFSSQIFSLGYCPTGDWLAVGMENSNV  616 (705)
T ss_pred             eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh----hh-hhhhhhheecccCCCccceeeecccCcE
Confidence            99999999999999999999999 999999999999999865421    11 1245789999999999999999999999


Q ss_pred             EEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCC
Q 013717          322 LVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEG  399 (437)
Q Consensus       322 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  399 (437)
                      .|......+.     ..+.-|...|+++.|.  |.++++.+.|+.+..|...-+.   .+...+ ....|.++..+.++ 
T Consensus       617 evlh~skp~k-----yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa---siFqsk-E~SsVlsCDIS~dd-  686 (705)
T KOG0639|consen  617 EVLHTSKPEK-----YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA---SIFQSK-ESSSVLSCDISFDD-  686 (705)
T ss_pred             EEEecCCccc-----eeecccccEEEEEEecccCceeeecCchhhhhhccCcccc---ceeecc-ccCcceeeeeccCc-
Confidence            9988765432     2245588889887765  7799999999999999988766   444444 45789999999887 


Q ss_pred             CCceEEEEEecCCCcEEEEeec
Q 013717          400 QNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       400 ~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                          +|++||+.|....+|.+.
T Consensus       687 ----kyIVTGSGdkkATVYeV~  704 (705)
T KOG0639|consen  687 ----KYIVTGSGDKKATVYEVI  704 (705)
T ss_pred             ----eEEEecCCCcceEEEEEe
Confidence                599999999999999874

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=9.3e-29  Score=203.10  Aligned_cols=268  Identities=15%  Similarity=0.241  Sum_probs=211.6

Q ss_pred             cceeecccc-ccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccc
Q 013717           60 LSLQTLPSV-PSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFN  136 (437)
Q Consensus        60 ~~~~~~~~~-~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~  136 (437)
                      ..+.-+|.. ..+++++.||.+.+|++.. ..+..++ .|.+.|..|++....++++++| +|+.|.++..   ...++ 
T Consensus        70 ~~lakhp~~ls~~aSGs~DG~VkiWnlsq-R~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~---p~~ti-  144 (433)
T KOG0268|consen   70 SCLAKHPNKLSTVASGSCDGEVKIWNLSQ-RECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGP---PLHTI-  144 (433)
T ss_pred             chhhcCcchhhhhhccccCceEEEEehhh-hhhhheeecccCceeeEEecccceEEecCCcceeeeeccCC---cceee-
Confidence            355666765 7899999999999999977 5666777 9999999999998888888888 9999998873   34443 


Q ss_pred             cCCCCcccEEEEEEe--CCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCc
Q 013717          137 DNDSSSGSVKSVTFC--DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA  214 (437)
Q Consensus       137 ~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (437)
                         .....+..|.-+  .+.++|+|.  .|.|||.........+.                              --...
T Consensus       145 ---lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~sms------------------------------wG~Dt  189 (433)
T KOG0268|consen  145 ---LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMS------------------------------WGADS  189 (433)
T ss_pred             ---eccccccccccccccccccccCc--eeeecccccCCccceee------------------------------cCCCc
Confidence               134556666665  333888876  49999987554333332                              24567


Q ss_pred             EEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceee
Q 013717          215 VTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALI  290 (437)
Q Consensus       215 v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~  290 (437)
                      |.++.|+|   ..|++++.|+.|.+||+++..+++.+. ..-.-+.|+|+|.+. +++|..|..+..||++.-.   .++
T Consensus       190 i~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~---~p~  265 (433)
T KOG0268|consen  190 ISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS---RPL  265 (433)
T ss_pred             eeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc---ccc
Confidence            89999999   889999999999999999998887765 344567899999777 9999999999999987544   467


Q ss_pred             EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEe
Q 013717          291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIW  368 (437)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iw  368 (437)
                      ....+|.+.|.+++|+|.|+.|++|+.|.+|+||..+.+...-....   .-...|.|+.|+-+  ++++|+.|+.|++|
T Consensus       266 ~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht---kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlW  342 (433)
T KOG0268|consen  266 NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT---KRMQHVFCVKYSMDSKYIISGSDDGNVRLW  342 (433)
T ss_pred             hhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH---hhhheeeEEEEeccccEEEecCCCcceeee
Confidence            77889999999999999999999999999999999987654332211   12345778877644  99999999999999


Q ss_pred             eCCCCC
Q 013717          369 QRGSDG  374 (437)
Q Consensus       369 d~~~~~  374 (437)
                      .....+
T Consensus       343 ka~Ase  348 (433)
T KOG0268|consen  343 KAKASE  348 (433)
T ss_pred             ecchhh
Confidence            876544

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.2e-28  Score=188.44  Aligned_cols=251  Identities=19%  Similarity=0.288  Sum_probs=195.8

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCce-eeeeccccCCCCcccEEEEEEe-CCe---EEEEecCCeEEEE
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTW-TSINTFNDNDSSSGSVKSVTFC-DGK---IFTAHQDCKIRVW  167 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~-~~~~~~~~~~~h~~~v~~l~~~-~~~---l~s~~~dg~i~iw  167 (437)
                      .|.+.|..+..+  |..|||++.| +|+|+....... +.+.++   .+|.++|..++|. |..   |++++.||.|.||
T Consensus         9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L---~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAEL---TGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEe---cCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            899999988777  9999999999 999999987533 555555   7999999999997 433   9999999999999


Q ss_pred             eCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEEEECCCcEEEEECCCc-
Q 013717          168 QLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYSVSWDKSLKIWRASDL-  242 (437)
Q Consensus       168 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~-  242 (437)
                      .-.+++-.+...                            +..|...|++++|.|    -.|++++.||.|.|++.+.. 
T Consensus        86 ke~~g~w~k~~e----------------------------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g  137 (299)
T KOG1332|consen   86 KEENGRWTKAYE----------------------------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG  137 (299)
T ss_pred             ecCCCchhhhhh----------------------------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC
Confidence            988875333222                            235999999999988    67889999999999988654 


Q ss_pred             --ceEEEeecccccEEEEEEecC---C-----------e-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEE
Q 013717          243 --RCLESIKAHEDAVNAVAVSAG---G-----------T-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALAL  305 (437)
Q Consensus       243 --~~~~~~~~~~~~v~~~~~~~~---~-----------~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~  305 (437)
                        ........|.-.|+++.|.|.   |           + |++|+.|..|+||+...+  .+.....+++|..-|+.++|
T Consensus       138 ~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAw  215 (299)
T KOG1332|consen  138 GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAW  215 (299)
T ss_pred             CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhh
Confidence              122333478999999999885   3           3 999999999999998754  55666678999999999999


Q ss_pred             ccCC----CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEE--EeeCCEEEEEeCCCcEEEeeCCCCCCeeee
Q 013717          306 SDDG----TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCL--INVAGLLMSGSADRTVRIWQRGSDGRFGCL  379 (437)
Q Consensus       306 ~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  379 (437)
                      .|.-    .+|++++.||++.||..+........ ..+......+..+  ++.+++|++++.|+.|.+|.-....++.++
T Consensus       216 aP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~-tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v  294 (299)
T KOG1332|consen  216 APSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKK-TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEV  294 (299)
T ss_pred             ccccCCCceeeEEecCCCcEEEEEecCccCcccc-cccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEc
Confidence            9953    48999999999999988743222221 1122234445544  455889999999999999987766555554


Q ss_pred             e
Q 013717          380 A  380 (437)
Q Consensus       380 ~  380 (437)
                      .
T Consensus       295 ~  295 (299)
T KOG1332|consen  295 G  295 (299)
T ss_pred             c
Confidence            3

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=5.7e-27  Score=184.42  Aligned_cols=261  Identities=19%  Similarity=0.192  Sum_probs=212.1

Q ss_pred             eccccceeeccccccccccCCCceeEEecCCCcceeeeec--CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCce
Q 013717           56 LQSNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL--GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTW  129 (437)
Q Consensus        56 ~~~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~--~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~  129 (437)
                      .+...++...-....+++++.|+++.+|++.........-  ||.+.|-.++|+   .+++++++.| .|++||...++ 
T Consensus        20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k-   98 (313)
T KOG1407|consen   20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGK-   98 (313)
T ss_pred             hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCc-
Confidence            4455677888889999999999999999998764433333  999999999998   8999999999 99999999854 


Q ss_pred             eeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeecccee
Q 013717          130 TSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKL  207 (437)
Q Consensus       130 ~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (437)
                       +....   . ..+.=.-+.|+|+.  ++.++.|..|.+.|.++.+......                            
T Consensus        99 -~~~~i---~-~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~----------------------------  145 (313)
T KOG1407|consen   99 -CTARI---E-TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ----------------------------  145 (313)
T ss_pred             -EEEEe---e-ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc----------------------------
Confidence             34333   1 23333456677544  9999999999999998776444332                            


Q ss_pred             eecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCc
Q 013717          208 WIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNE  284 (437)
Q Consensus       208 ~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~  284 (437)
                         ....+..++|+.  ++++.....|+|.|......+++..++.|.....||.|+|+|+ ||+|+.|-.+.+||+..  
T Consensus       146 ---~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E--  220 (313)
T KOG1407|consen  146 ---FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE--  220 (313)
T ss_pred             ---ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH--
Confidence               344667777765  6777667779999999999999999999999999999999999 99999999999998753  


Q ss_pred             ccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCC
Q 013717          285 KRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSAD  362 (437)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~d  362 (437)
                        ..+++.+..+.-+|..+.|+.||++||+|++|..|-|=+++++.....+.     +.++...++|+|+  +||-+..|
T Consensus       221 --LiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-----~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  221 --LICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-----CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             --hhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-----ccCCceeEEecCCCceeeEEecC
Confidence              34677888899999999999999999999999999999999998665543     5778889999988  66666554

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=1.5e-27  Score=211.59  Aligned_cols=253  Identities=19%  Similarity=0.283  Sum_probs=209.5

Q ss_pred             cccccCCCceeEEecCCC-cceeeeec-CccCCeEE-EEee---CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCc
Q 013717           70 SLQKLSPDETINFSSASH-LCINSVQL-GHKLPIGC-IAVH---HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSS  142 (437)
Q Consensus        70 ~~~s~s~dg~i~~~~~~~-~~~~~~~~-~h~~~V~~-l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~  142 (437)
                      .+.+.|.||++++|+... .......+ +|.+-|.+ ++|.   +..|++|+.| .|.+|....  ...+..+   .+|+
T Consensus        27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~--~~P~~~L---kgH~  101 (745)
T KOG0301|consen   27 CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ--AEPLYTL---KGHK  101 (745)
T ss_pred             EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCC--CCchhhh---hccc
Confidence            688899999999999844 44444666 88888888 7776   5679999999 999999988  4555565   7899


Q ss_pred             ccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717          143 GSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN  221 (437)
Q Consensus       143 ~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  221 (437)
                      ..|.++....+. +++|+.|.++++|....-..                                .+.+|...|++++.-
T Consensus       102 snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~--------------------------------~l~gH~asVWAv~~l  149 (745)
T KOG0301|consen  102 SNVCSLSIGEDGTLISGSWDSTAKVWRIGELVY--------------------------------SLQGHTASVWAVASL  149 (745)
T ss_pred             cceeeeecCCcCceEecccccceEEecchhhhc--------------------------------ccCCcchheeeeeec
Confidence            999999977555 89999999999998764321                                124799999999988


Q ss_pred             C-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccE
Q 013717          222 N-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAV  300 (437)
Q Consensus       222 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i  300 (437)
                      | +.+++|+.|.+|++|.-  ++.++++.+|.+-|..+++-+++.|++++.||.|++|++..     ..+.++.+|.+-+
T Consensus       150 ~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~g-----e~l~~~~ghtn~v  222 (745)
T KOG0301|consen  150 PENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDG-----EVLLEMHGHTNFV  222 (745)
T ss_pred             CCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccC-----ceeeeeeccceEE
Confidence            8 99999999999999985  77899999999999999999998999999999999999843     4788889999999


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee-CCEEEEEeCCCcEEEeeCCC
Q 013717          301 NALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV-AGLLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       301 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~dg~i~iwd~~~  372 (437)
                      .++...+++..++++++|++++||+..  +    +.+.+.-....|++...- ..-|++|+.||.||||....
T Consensus       223 Ysis~~~~~~~Ivs~gEDrtlriW~~~--e----~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  223 YSISMALSDGLIVSTGEDRTLRIWKKD--E----CVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             EEEEecCCCCeEEEecCCceEEEeecC--c----eEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence            999988888899999999999999986  2    222233234466666654 34789999999999998663

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=4.8e-27  Score=207.92  Aligned_cols=264  Identities=20%  Similarity=0.263  Sum_probs=217.8

Q ss_pred             ccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCC-Cc
Q 013717           67 SVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDS-SS  142 (437)
Q Consensus        67 ~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~-h~  142 (437)
                      +...++.++....+.+|+..........--+...|+++.|+  |++|++|..+ .|.|||...  .+.+..+   .+ |.
T Consensus       186 ss~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~--~k~~~~~---~~~h~  260 (484)
T KOG0305|consen  186 SSANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE--QKKTRTL---RGSHA  260 (484)
T ss_pred             ccCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhh--ccccccc---cCCcC
Confidence            44556668888899999997654222221338999999999  9999999999 999999988  4455555   45 99


Q ss_pred             ccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC
Q 013717          143 GSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN  222 (437)
Q Consensus       143 ~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  222 (437)
                      ..|-+++|....+.+|+.|+.|..+|++..+.....                             +.+|...|..++|++
T Consensus       261 ~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~-----------------------------~~~H~qeVCgLkws~  311 (484)
T KOG0305|consen  261 SRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVST-----------------------------LQGHRQEVCGLKWSP  311 (484)
T ss_pred             ceeEEEeccCceEEEecCCCcEEEEEEecchhhhhh-----------------------------hhcccceeeeeEECC
Confidence            999999999888999999999999999977644331                             246999999999998


Q ss_pred             --CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEe--CCCeEEEecCCCCcccceeeEEeeCc
Q 013717          223 --GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGS--ADRKIRVWAKPFNEKRHALIATLEKH  296 (437)
Q Consensus       223 --~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~  296 (437)
                        .++++|+.|+.+.|||....+.+..+..|...|.+++|+|-..  ||+|+  .|+.|++||..++.    .+.... .
T Consensus       312 d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~----~i~~vd-t  386 (484)
T KOG0305|consen  312 DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA----RIDSVD-T  386 (484)
T ss_pred             CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc----Eecccc-c
Confidence              9999999999999999988888999999999999999999655  77765  59999999887543    444433 5


Q ss_pred             cccEEEEEEccCCCEEEEE--eCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCC
Q 013717          297 KSAVNALALSDDGTVLFSG--ACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~  372 (437)
                      .+.|..|.|++..+.|+++  ..++.|.||+..+.+    ....+.+|...|..++.+++  .+++|+.|.++++|++-.
T Consensus       387 gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~----~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  387 GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK----LVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc----eeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence            7899999999998877764  457899999997644    66678899999998887765  999999999999999876


Q ss_pred             C
Q 013717          373 D  373 (437)
Q Consensus       373 ~  373 (437)
                      .
T Consensus       463 ~  463 (484)
T KOG0305|consen  463 E  463 (484)
T ss_pred             C
Confidence            4

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.5e-28  Score=218.14  Aligned_cols=286  Identities=19%  Similarity=0.269  Sum_probs=217.6

Q ss_pred             CCeEEEEee--CCEEEEEecCeEEEEeCCCCce--eeeeccccCCCCcccEEEEEEe---CCeEEEEecCCeEEEEeCCC
Q 013717           99 LPIGCIAVH--HNFLYAASSHEINVYDRTGTTW--TSINTFNDNDSSSGSVKSVTFC---DGKIFTAHQDCKIRVWQLTP  171 (437)
Q Consensus        99 ~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~--~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~  171 (437)
                      ....+|..+  -..++.++...++||.++....  .+...+.....-...+..+.|.   .+.|++++..|.|.+||+..
T Consensus        40 ~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk  119 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK  119 (839)
T ss_pred             cccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence            344555555  5667777777778887765321  1111111111122344556666   33499999999999999986


Q ss_pred             CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEe
Q 013717          172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESI  248 (437)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~  248 (437)
                      ....+.+                           ..|..|+..++++.|+.   .+|++|+.||+|++||++..+...++
T Consensus       120 ~~rnk~l---------------------------~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~  172 (839)
T KOG0269|consen  120 SIRNKLL---------------------------TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF  172 (839)
T ss_pred             cccchhh---------------------------hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc
Confidence            3211111                           12346999999999987   99999999999999999999999999


Q ss_pred             ecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEEC
Q 013717          249 KAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDR  326 (437)
Q Consensus       249 ~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (437)
                      .+....|..++|+|...  |+++...|.+++||++...   .+...+.+|.++|.++.|+|++.+||+|+.|+.|+|||+
T Consensus       173 ~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~---r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~  249 (839)
T KOG0269|consen  173 RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD---RCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDM  249 (839)
T ss_pred             cccchhhhceeeccCCCceEEEecCCceEEEeeccCch---hHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEec
Confidence            88999999999998543  9999999999999998654   456678899999999999999999999999999999999


Q ss_pred             CCCccceEEeeeecccccceEEEEeeCC---EEEEEeC--CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCC
Q 013717          327 EDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSA--DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQN  401 (437)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  401 (437)
                      .+.+......  + ....++.++.|.|.   .|++++.  |-.|+|||++..  +.+..++..|...++.++|...+.  
T Consensus       250 t~~~~~~~~t--I-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP--YIP~~t~~eH~~~vt~i~W~~~d~--  322 (839)
T KOG0269|consen  250 TDSRAKPKHT--I-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP--YIPYATFLEHTDSVTGIAWDSGDR--  322 (839)
T ss_pred             cCCCccceeE--E-eecceeeeeeeccCccchhhhhhccccceEEEEeeccc--cccceeeeccCccccceeccCCCc--
Confidence            8754332221  1 13456788888876   7887765  778999999974  478889999999999999987444  


Q ss_pred             ceEEEEEecCCCcEEEEeeccC
Q 013717          402 GVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       402 ~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                        ..+.+++.||.|..-.++..
T Consensus       323 --~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  323 --INLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             --eeeEeecCccHHHHhhhhcc
Confidence              38999999999877665544

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=5.3e-27  Score=218.69  Aligned_cols=302  Identities=20%  Similarity=0.262  Sum_probs=228.3

Q ss_pred             CccCCeEEEEee--CCEEEEEe--cC-eEEEEeCCCCc-------eeeeeccccCCCCcccEEEEEEeCCe--EEEEecC
Q 013717           96 GHKLPIGCIAVH--HNFLYAAS--SH-EINVYDRTGTT-------WTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD  161 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~--~d-~v~vwd~~~~~-------~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d  161 (437)
                      .+...|.+++.+  +..++||+  .| .++||+.+.-.       ......+.....|.+.|+|+.|++|+  |++|+.|
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD   90 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD   90 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence            345678999998  89999999  77 88899986510       01122223336799999999999876  9999999


Q ss_pred             CeEEEEeCCCCcccccccccCccccceeeecC-CCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEE
Q 013717          162 CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFML-PNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWR  238 (437)
Q Consensus       162 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd  238 (437)
                      +.|.+|+.........             +.. ........-....++.+|...|.+++|+|  .++++++.|++|.|||
T Consensus        91 ~~v~iW~~~~~~~~~~-------------fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn  157 (942)
T KOG0973|consen   91 RLVMIWERAEIGSGTV-------------FGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWN  157 (942)
T ss_pred             ceEEEeeecccCCccc-------------ccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEc
Confidence            9999999874100000             000 00111122234466788999999999998  9999999999999999


Q ss_pred             CCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC------ccccEEEEEEccCCCE
Q 013717          239 ASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK------HKSAVNALALSDDGTV  311 (437)
Q Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~  311 (437)
                      ..+++.+..+++|...|..+.|.|-|+ |++-+.|++|++|++..    +...+.+.+      ....+..+.|+|||++
T Consensus       158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d----w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~  233 (942)
T KOG0973|consen  158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD----WGIEKSITKPFEESPLTTFFLRLSWSPDGHH  233 (942)
T ss_pred             cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc----ceeeEeeccchhhCCCcceeeecccCCCcCe
Confidence            999999999999999999999999999 99999999999997542    233333332      2346789999999999


Q ss_pred             EEEEeC----CCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-------------------EEEEEeCCCcEEEe
Q 013717          312 LFSGAC----DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-------------------LLMSGSADRTVRIW  368 (437)
Q Consensus       312 l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------------~l~~~~~dg~i~iw  368 (437)
                      |++...    -.++.|.+-.+    +.....+-||..++.++.|++.                   .+|+|+.|+.|-||
T Consensus       234 las~nA~n~~~~~~~IieR~t----Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW  309 (942)
T KOG0973|consen  234 LASPNAVNGGKSTIAIIERGT----WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVW  309 (942)
T ss_pred             ecchhhccCCcceeEEEecCC----ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEE
Confidence            998643    34577777533    3355567889999999998742                   57899999999999


Q ss_pred             eCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          369 QRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       369 d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      .....++.-.+.  +-....|.+++|+|+|-     .|+.+|.||+|.+..++.++.
T Consensus       310 ~T~~~RPl~vi~--~lf~~SI~DmsWspdG~-----~LfacS~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  310 NTALPRPLFVIH--NLFNKSIVDMSWSPDGF-----SLFACSLDGTVALIHFEEKEL  359 (942)
T ss_pred             ecCCCCchhhhh--hhhcCceeeeeEcCCCC-----eEEEEecCCeEEEEEcchHHh
Confidence            987655322222  22356899999999994     699999999999999987653

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.3e-27  Score=201.36  Aligned_cols=269  Identities=18%  Similarity=0.291  Sum_probs=213.0

Q ss_pred             ccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeec
Q 013717           59 NLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINT  134 (437)
Q Consensus        59 ~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~  134 (437)
                      ..++.|.|..|.-..+...-.+.+++... ......+ -..+.|+++.|-  |++||.|+.. .|+|||.++  ...++.
T Consensus        29 vssl~fsp~~P~d~aVt~S~rvqly~~~~-~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~--r~iLR~  105 (487)
T KOG0310|consen   29 VSSLCFSPKHPYDFAVTSSVRVQLYSSVT-RSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS--RVILRQ  105 (487)
T ss_pred             ceeEecCCCCCCceEEecccEEEEEecch-hhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc--HHHHHH
Confidence            35788888888766677777788887755 3344445 788999999998  9999999888 999999666  334444


Q ss_pred             cccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717          135 FNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH  211 (437)
Q Consensus       135 ~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (437)
                      +   .+|+.+|..+.|++..   +++|+.|+.+++||+.+.....                              .+.+|
T Consensus       106 ~---~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~------------------------------~l~~h  152 (487)
T KOG0310|consen  106 L---YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQA------------------------------ELSGH  152 (487)
T ss_pred             H---hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEE------------------------------EecCC
Confidence            4   7899999999999543   8999999999999999875311                              12479


Q ss_pred             CCcEEEEEeCC---CeEEEEECCCcEEEEECCCc-ceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccc
Q 013717          212 GDAVTGLAVNN---GLIYSVSWDKSLKIWRASDL-RCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRH  287 (437)
Q Consensus       212 ~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~  287 (437)
                      ++.|.|.+++|   .++++|+.||.|++||++.. ..+.++. |..+|..+.+-|.|.+++......|++||+..+.   
T Consensus       153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~---  228 (487)
T KOG0310|consen  153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG---  228 (487)
T ss_pred             cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc---
Confidence            99999999998   58999999999999999887 6666665 9999999999999884444456789999987554   


Q ss_pred             eeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC--CEEEEEeCCCcE
Q 013717          288 ALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLLMSGSADRTV  365 (437)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~i  365 (437)
                      +.+..+..|...|+|+++..++..|++|+.|+.|++||+.+-+    ....+. ..++|.+++.++  +.++.|..+|.+
T Consensus       229 qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K----vv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv  303 (487)
T KOG0310|consen  229 QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK----VVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLV  303 (487)
T ss_pred             eehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceE----EEEeee-cccceeeEEecCCCceEEEeccccee
Confidence            3455555699999999999999999999999999999976544    333332 467888887765  599999999988


Q ss_pred             EEeeCCC
Q 013717          366 RIWQRGS  372 (437)
Q Consensus       366 ~iwd~~~  372 (437)
                      .+=+...
T Consensus       304 ~~rr~~~  310 (487)
T KOG0310|consen  304 SIRRREV  310 (487)
T ss_pred             eeehhhc
Confidence            7765443

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=8e-27  Score=187.34  Aligned_cols=254  Identities=14%  Similarity=0.138  Sum_probs=196.6

Q ss_pred             cccceeecc-ccccccccCCCceeEEecCCCcceee-eec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceee
Q 013717           58 SNLSLQTLP-SVPSLQKLSPDETINFSSASHLCINS-VQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTS  131 (437)
Q Consensus        58 ~~~~~~~~~-~~~~~~s~s~dg~i~~~~~~~~~~~~-~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~  131 (437)
                      +...+.|+| ....++..|-||++++|+++...... ... .|.++|.+++|+  |..+++|+.| .+++||+.++....
T Consensus        29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~  108 (347)
T KOG0647|consen   29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ  108 (347)
T ss_pred             chheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeee
Confidence            345788999 44556688999999999997743333 333 999999999999  9999999999 99999999974444


Q ss_pred             eeccccCCCCcccEEEEEEeCCe----EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeecccee
Q 013717          132 INTFNDNDSSSGSVKSVTFCDGK----IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKL  207 (437)
Q Consensus       132 ~~~~~~~~~h~~~v~~l~~~~~~----l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (437)
                      +      ..|.++|.++.|-+..    |+||+.|.+|++||.+.......+.                            
T Consensus       109 v------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~----------------------------  154 (347)
T KOG0647|consen  109 V------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ----------------------------  154 (347)
T ss_pred             e------eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee----------------------------
Confidence            3      3599999999998554    7999999999999999765444433                            


Q ss_pred             eecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEe--ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCc
Q 013717          208 WIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESI--KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNE  284 (437)
Q Consensus       208 ~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~  284 (437)
                         -.+.++++..-..+++.+..+..|.+|+++.+......  ...+-.+.|++..++.. .+.|+-+|.+.+..++...
T Consensus       155 ---LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~  231 (347)
T KOG0647|consen  155 ---LPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPN  231 (347)
T ss_pred             ---ccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCC
Confidence               44678888887789999999999999999776432221  12345689999998888 9999999999999886532


Q ss_pred             ccceeeEEeeCcc---------ccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC
Q 013717          285 KRHALIATLEKHK---------SAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG  354 (437)
Q Consensus       285 ~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  354 (437)
                      .  +.-..|+.|.         -.|++|+|+|....|++++.||+..+||-....    .+.....|..+|.|..|+.+
T Consensus       232 ~--~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~----kLk~s~~~~qpItcc~fn~~  304 (347)
T KOG0647|consen  232 P--KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART----KLKTSETHPQPITCCSFNRN  304 (347)
T ss_pred             c--cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh----hhhccCcCCCccceeEecCC
Confidence            2  2223344443         257899999998899999999999999976543    23334668889998888754

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1.4e-26  Score=186.56  Aligned_cols=260  Identities=17%  Similarity=0.182  Sum_probs=204.8

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeecccc
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTFND  137 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~  137 (437)
                      .++.|.|+...++..+-||.+++++.... .+...+.|..++.+++|. ...+++|+-| .|+.+|++++....+.    
T Consensus        17 S~v~f~~~~~~LLvssWDgslrlYdv~~~-~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~ig----   91 (323)
T KOG1036|consen   17 SSVKFSPSSSDLLVSSWDGSLRLYDVPAN-SLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIG----   91 (323)
T ss_pred             eeEEEcCcCCcEEEEeccCcEEEEeccch-hhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeec----
Confidence            46788888888998999999999999876 555555999999999999 7899999999 9999999997544443    


Q ss_pred             CCCCcccEEEEEEe--CCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcE
Q 013717          138 NDSSSGSVKSVTFC--DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV  215 (437)
Q Consensus       138 ~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  215 (437)
                        .|..+|.||.++  .+.+++|+.|++|++||.+........                               .....|
T Consensus        92 --th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~-------------------------------d~~kkV  138 (323)
T KOG1036|consen   92 --THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF-------------------------------DQGKKV  138 (323)
T ss_pred             --cCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc-------------------------------ccCceE
Confidence              499999999999  455999999999999999863322211                               244589


Q ss_pred             EEEEeCCCeEEEEECCCcEEEEECCCcceEEEee--cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEE
Q 013717          216 TGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIK--AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIAT  292 (437)
Q Consensus       216 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~  292 (437)
                      .++....+.|++|+.|..+.+||+++.......+  ..+-.+.|+++.|++. +++++-||.|.+=.++...........
T Consensus       139 y~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkya  218 (323)
T KOG1036|consen  139 YCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYA  218 (323)
T ss_pred             EEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhcee
Confidence            9999999999999999999999999876544332  3456799999999887 999999999988766544332233334


Q ss_pred             eeCcc---------ccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeC
Q 013717          293 LEKHK---------SAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSA  361 (437)
Q Consensus       293 ~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~  361 (437)
                      |+.|.         -+|++|+|+|-...|++|+.||.|.+||+...+....    +......|..++++  |..||+++.
T Consensus       219 FkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q----~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  219 FKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQ----LAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhh----ccCCCCceEEEEeccCCCeEEEEec
Confidence            44443         3789999999988999999999999999987654333    33445667777666  558888864

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.7e-27  Score=192.56  Aligned_cols=277  Identities=19%  Similarity=0.303  Sum_probs=225.5

Q ss_pred             eeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeC------CCC----
Q 013717           62 LQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDR------TGT----  127 (437)
Q Consensus        62 ~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~------~~~----  127 (437)
                      +......+.+.+.+.|++..+|.++. ..|+..+ ||.+.|+|+.|+  +.++++++.| +..||..      ...    
T Consensus       154 Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~  232 (481)
T KOG0300|consen  154 VAADSTQPICGTASADHTARIWSLES-GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPS  232 (481)
T ss_pred             ehhhcCCcceeecccccceeEEeecc-ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCC
Confidence            34445667889999999999999987 5666667 999999999999  8999999999 9999982      110    


Q ss_pred             ----c---------------------eeeeeccccCCCCcccEEEEEEeCC--eEEEEecCCeEEEEeCCCCcccccccc
Q 013717          128 ----T---------------------WTSINTFNDNDSSSGSVKSVTFCDG--KIFTAHQDCKIRVWQLTPTKHHKLKTT  180 (437)
Q Consensus       128 ----~---------------------~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~  180 (437)
                          +                     ......+..+.+|.+.|.+..|..+  .+++++.|.+..+||+++++....+. 
T Consensus       233 ~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt-  311 (481)
T KOG0300|consen  233 DHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILT-  311 (481)
T ss_pred             CCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceecccc-
Confidence                0                     0111112233678889999999733  49999999999999999998666554 


Q ss_pred             cCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc-ceEEEeecccccEEE
Q 013717          181 LPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL-RCLESIKAHEDAVNA  257 (437)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~  257 (437)
                                                   +|..+.+.++-+|  +++++.+.|.+.++||.+.. ..+..|++|.+.|++
T Consensus       312 -----------------------------GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS  362 (481)
T KOG0300|consen  312 -----------------------------GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS  362 (481)
T ss_pred             -----------------------------CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence                                         7999999999888  88899999999999999743 456778899999999


Q ss_pred             EEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEee
Q 013717          258 VAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTG  337 (437)
Q Consensus       258 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  337 (437)
                      +.|..+.++++|+.|.+|++||++...   .++.+++ ..++++.++.+..+..|+.-..+..|++||+...+.......
T Consensus       363 ~vF~~dd~vVSgSDDrTvKvWdLrNMR---splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrt  438 (481)
T KOG0300|consen  363 VVFNTDDRVVSGSDDRTVKVWDLRNMR---SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRT  438 (481)
T ss_pred             EEEecCCceeecCCCceEEEeeecccc---Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcc
Confidence            999999999999999999999998544   3445554 567899999998888999998899999999987655444445


Q ss_pred             eecccccceEEEEeeCC----EEEEEeCCCcEEEeeCCCC
Q 013717          338 ALRGHGKAILCLINVAG----LLMSGSADRTVRIWQRGSD  373 (437)
Q Consensus       338 ~~~~~~~~i~~~~~~~~----~l~~~~~dg~i~iwd~~~~  373 (437)
                      ...+|...|.|.+|..+    -|++++.|..+.=|.+...
T Consensus       439 sRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  439 SRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             cccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            56789999999999866    7889999999999998763

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.2e-26  Score=185.30  Aligned_cols=274  Identities=18%  Similarity=0.298  Sum_probs=208.8

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCC--CceeeeeccccCCCCcccEEEEEEe-CCe---EEEEecCCeEEE
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTG--TTWTSINTFNDNDSSSGSVKSVTFC-DGK---IFTAHQDCKIRV  166 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~--~~~~~~~~~~~~~~h~~~v~~l~~~-~~~---l~s~~~dg~i~i  166 (437)
                      +|.+-|.|+.|+  |+.+|+++.| +|+|||.+.  +.+......   ..|.+.|..+.|. |..   +++++.|+++.|
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W---rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW---RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE---EecCCcEEEEEecCccccceEEEEecCCceee
Confidence            899999999999  9999999999 999999653  467777777   6799999999998 433   999999999999


Q ss_pred             EeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEEEECCCcEEEEECCCc
Q 013717          167 WQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYSVSWDKSLKIWRASDL  242 (437)
Q Consensus       167 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~  242 (437)
                      |.-........-                     ..-.....+......|+++.|.|    -.+++++.||.+|||+...-
T Consensus        88 WEE~~~~~~~~~---------------------~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp  146 (361)
T KOG2445|consen   88 WEEQEKSEEAHG---------------------RRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP  146 (361)
T ss_pred             eeeccccccccc---------------------ceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence            986421110000                     00011233456788999999998    57899999999999987543


Q ss_pred             c------eEEEee-------cccccEEEEEEecCCe----EEEEeCC-----CeEEEecCCCCcccceeeEEeeCccccE
Q 013717          243 R------CLESIK-------AHEDAVNAVAVSAGGT----VYTGSAD-----RKIRVWAKPFNEKRHALIATLEKHKSAV  300 (437)
Q Consensus       243 ~------~~~~~~-------~~~~~v~~~~~~~~~~----l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~i  300 (437)
                      -      ...+++       .+.....|+.|+|...    |++|+.+     +.+.||....+.+.+..+.++.+|..+|
T Consensus       147 ~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI  226 (361)
T KOG2445|consen  147 MNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPI  226 (361)
T ss_pred             cccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcc
Confidence            2      222232       3567788999997553    6666665     5899998877777778888888999999


Q ss_pred             EEEEEccC-C---CEEEEEeCCCcEEEEECCC----------------CccceEEeeeecccccceEEEEee--CCEEEE
Q 013717          301 NALALSDD-G---TVLFSGACDRSILVWDRED----------------SANHMVVTGALRGHGKAILCLINV--AGLLMS  358 (437)
Q Consensus       301 ~~~~~~~~-~---~~l~~~~~dg~i~i~d~~~----------------~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~  358 (437)
                      ++++|.|+ |   .+|++++.|| |+||.++.                .+........+.+|.+.|..+.|+  |..|++
T Consensus       227 ~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsS  305 (361)
T KOG2445|consen  227 RDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSS  305 (361)
T ss_pred             eeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEee
Confidence            99999995 2   4899999999 99999873                122334556688999999998887  779999


Q ss_pred             EeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEE
Q 013717          359 GSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAV  395 (437)
Q Consensus       359 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~  395 (437)
                      .+.||.||+|...-...++|...+.... .+....|.
T Consensus       306 tGdDG~VRLWkany~n~~kC~sv~~~e~-~~~~~~~~  341 (361)
T KOG2445|consen  306 TGDDGCVRLWKANYNNLWKCTSVLKAEG-SVTKPDFS  341 (361)
T ss_pred             cCCCceeeehhhhhhhhheeeeEEeccC-CCCCcccc
Confidence            9999999999988777777887776543 33333343

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=7.7e-26  Score=182.20  Aligned_cols=252  Identities=16%  Similarity=0.278  Sum_probs=196.9

Q ss_pred             CCCcccEEEEEEe--CCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717          139 DSSSGSVKSVTFC--DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT  216 (437)
Q Consensus       139 ~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  216 (437)
                      .+|..-|.++.|.  +.++++|+.|++|+|||.+........                          ...+..|.+.|.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~--------------------------Ts~Wrah~~Si~   63 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSC--------------------------TSSWRAHDGSIW   63 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEE--------------------------eeeEEecCCcEE
Confidence            4688999999998  445999999999999997554321111                          123567999999


Q ss_pred             EEEeCC----CeEEEEECCCcEEEEECCC---------cceEEEeecccccEEEEEEecCCe---EEEEeCCCeEEEecC
Q 013717          217 GLAVNN----GLIYSVSWDKSLKIWRASD---------LRCLESIKAHEDAVNAVAVSAGGT---VYTGSADRKIRVWAK  280 (437)
Q Consensus       217 ~~~~~~----~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~---l~~~~~dg~v~iwd~  280 (437)
                      .+.|.+    +.+++++.|+++.||.-..         .....++......|+.+.|.|...   +++++.||.||||+.
T Consensus        64 rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA  143 (361)
T KOG2445|consen   64 RVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEA  143 (361)
T ss_pred             EEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEec
Confidence            999965    8899999999999998621         123445667788999999999654   999999999999976


Q ss_pred             CCCc--ccceeeEEee-------CccccEEEEEEccC---CCEEEEEeCC-----CcEEEEECCCCccceEEeeeecccc
Q 013717          281 PFNE--KRHALIATLE-------KHKSAVNALALSDD---GTVLFSGACD-----RSILVWDREDSANHMVVTGALRGHG  343 (437)
Q Consensus       281 ~~~~--~~~~~~~~~~-------~~~~~i~~~~~~~~---~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~  343 (437)
                      ....  ..+.+...++       .+..+..|+.|+|.   ..+|++|+.+     +.++||......++......+.+|.
T Consensus       144 ~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~  223 (361)
T KOG2445|consen  144 PDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT  223 (361)
T ss_pred             CCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC
Confidence            4321  2233333333       45667889999983   4578888765     4899999888777777788888999


Q ss_pred             cceEEEEeeCC------EEEEEeCCCcEEEeeCCCCC-----------------CeeeeeeecCCCCCeeEEEEEccCCC
Q 013717          344 KAILCLINVAG------LLMSGSADRTVRIWQRGSDG-----------------RFGCLAVLEGHTKPVKSLTAVTEEGQ  400 (437)
Q Consensus       344 ~~i~~~~~~~~------~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~~~~~h~~~v~~l~~~~~~~~  400 (437)
                      .+|..++|.|+      +||+++.|| |+||.++...                 +.+.+..+.+|.+.|..+.|.-.+  
T Consensus       224 dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG--  300 (361)
T KOG2445|consen  224 DPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG--  300 (361)
T ss_pred             CcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee--
Confidence            99999999876      899999999 9999987411                 234567788999999999999988  


Q ss_pred             CceEEEEEecCCCcEEEEeecc
Q 013717          401 NGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       401 ~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                         ..|.+.|.||+||+|+...
T Consensus       301 ---tiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  301 ---TILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             ---eEEeecCCCceeeehhhhh
Confidence               4899999999999998543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=6.4e-26  Score=190.72  Aligned_cols=270  Identities=17%  Similarity=0.206  Sum_probs=216.6

Q ss_pred             ceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccc
Q 013717           61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFN  136 (437)
Q Consensus        61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~  136 (437)
                      ++...|+.+.+++++.|.++.+++...+. .+.++ ||...|+.+.|+  ...+++++.| .|+||..........  . 
T Consensus       224 ald~~~s~~~ilTGG~d~~av~~d~~s~q-~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~--~-  299 (506)
T KOG0289|consen  224 ALDIIPSSSKILTGGEDKTAVLFDKPSNQ-ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS--S-  299 (506)
T ss_pred             EEeecCCCCcceecCCCCceEEEecchhh-hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc--c-
Confidence            45556666889999999999999887744 44555 999999999999  7889999999 999999987532222  2 


Q ss_pred             cCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCc
Q 013717          137 DNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA  214 (437)
Q Consensus       137 ~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (437)
                        ..|..+|+.+...+.+  |++++.||+..+.|++++..+......                            ...-.
T Consensus       300 --~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~----------------------------~s~v~  349 (506)
T KOG0289|consen  300 --RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE----------------------------TSDVE  349 (506)
T ss_pred             --ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec----------------------------cccce
Confidence              4699999999998654  999999999999999998755443310                            12345


Q ss_pred             EEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeE
Q 013717          215 VTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIA  291 (437)
Q Consensus       215 v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~  291 (437)
                      +++.+|+|  ..+.+|..||.|+|||+.....+..|.+|.++|..++|+.+|. +++++.|+.|++||++...    ...
T Consensus       350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~----n~k  425 (506)
T KOG0289|consen  350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK----NFK  425 (506)
T ss_pred             eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc----ccc
Confidence            89999999  6778889999999999999999999999999999999999999 9999999999999998544    223


Q ss_pred             EeeC-ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEe
Q 013717          292 TLEK-HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIW  368 (437)
Q Consensus       292 ~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iw  368 (437)
                      ++.. ....+.++.|.+.|.+|+.++.|=+|++++-.+  ..+.....+..|.+...++.|...  ++++++.|..++++
T Consensus       426 t~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~--k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~  503 (506)
T KOG0289|consen  426 TIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT--KSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY  503 (506)
T ss_pred             eeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc--ccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence            3322 234799999999999999998776666666443  444555566778878888888755  99999999999888


Q ss_pred             eC
Q 013717          369 QR  370 (437)
Q Consensus       369 d~  370 (437)
                      .+
T Consensus       504 a~  505 (506)
T KOG0289|consen  504 AL  505 (506)
T ss_pred             ec
Confidence            64

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=8.7e-26  Score=204.46  Aligned_cols=318  Identities=17%  Similarity=0.235  Sum_probs=247.2

Q ss_pred             ccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCc
Q 013717           67 SVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSS  142 (437)
Q Consensus        67 ~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~  142 (437)
                      ..+.+.-++..|.+.+|+... .+.+.++ ++...|+++.-+  =+.+|.|..+ +|.+++++.+  +.+.++.   ...
T Consensus       171 YLNKIvvGs~~G~lql~Nvrt-~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d--kil~sFk---~d~  244 (910)
T KOG1539|consen  171 YLNKIVVGSSQGRLQLWNVRT-GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD--KILMSFK---QDW  244 (910)
T ss_pred             heeeEEEeecCCcEEEEEecc-CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC--cEEEEEE---ccc
Confidence            346677789999999999987 4556666 999999999998  6899999999 9999999984  5666662   225


Q ss_pred             ccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEE
Q 013717          143 GSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA  219 (437)
Q Consensus       143 ~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  219 (437)
                      +.|+.+.|..|+   +++|+..|.+.+||++..+......                             ..|.+.|....
T Consensus       245 g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~-----------------------------nah~~sv~~~~  295 (910)
T KOG1539|consen  245 GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTR-----------------------------NAHYGSVTGAT  295 (910)
T ss_pred             cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeee-----------------------------ccccCCcccce
Confidence            999999999554   8888889999999999877655444                             24888888888


Q ss_pred             eCC--CeEEEEECCCcEEEEECCCc----ceEEEeecccccEEEEEEe-cCCe-EEEEeCCCeEEEecCCCCccc-----
Q 013717          220 VNN--GLIYSVSWDKSLKIWRASDL----RCLESIKAHEDAVNAVAVS-AGGT-VYTGSADRKIRVWAKPFNEKR-----  286 (437)
Q Consensus       220 ~~~--~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~-~~~~-l~~~~~dg~v~iwd~~~~~~~-----  286 (437)
                      |.+  ..+++++.|+.+++|=..++    +.++.-.+|..+..|+.|. .++. +.+++.|++++.+++......     
T Consensus       296 fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~  375 (910)
T KOG1539|consen  296 FLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ  375 (910)
T ss_pred             ecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc
Confidence            877  88999999999998855543    3455556899999999987 5666 888999998888865311100     


Q ss_pred             -------------------cee--------------------------------------eEE-----eeCccccEEEEE
Q 013717          287 -------------------HAL--------------------------------------IAT-----LEKHKSAVNALA  304 (437)
Q Consensus       287 -------------------~~~--------------------------------------~~~-----~~~~~~~i~~~~  304 (437)
                                         .+.                                      ...     ++.....+++++
T Consensus       376 ~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~  455 (910)
T KOG1539|consen  376 LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVC  455 (910)
T ss_pred             cccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEE
Confidence                               000                                      000     111235688999


Q ss_pred             EccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCC-------
Q 013717          305 LSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGR-------  375 (437)
Q Consensus       305 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~-------  375 (437)
                      .++.|++.+.|+..|.|-+|++.++-....+ ..-..|..+|..++.++.  .+++++.+|.+++||......       
T Consensus       456 vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf-~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~  534 (910)
T KOG1539|consen  456 VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSF-GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG  534 (910)
T ss_pred             EeccCceEEEeccCCeEEEEEcccCeeeccc-ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC
Confidence            9999999999999999999999887532222 123579999999998865  899999999999999876330       


Q ss_pred             -------------------------------eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          376 -------------------------------FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       376 -------------------------------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                                                     .+.++.+.+|.+.|++++|+|++     ++|++++.|++||+||+.++.
T Consensus       535 ~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg-----rWlisasmD~tIr~wDlpt~~  609 (910)
T KOG1539|consen  535 SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDG-----RWLISASMDSTIRTWDLPTGT  609 (910)
T ss_pred             CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCC-----cEEEEeecCCcEEEEeccCcc
Confidence                                           11345577999999999999999     589999999999999999987


Q ss_pred             C
Q 013717          425 P  425 (437)
Q Consensus       425 ~  425 (437)
                      .
T Consensus       610 l  610 (910)
T KOG1539|consen  610 L  610 (910)
T ss_pred             e
Confidence            5

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=3.1e-26  Score=194.03  Aligned_cols=263  Identities=23%  Similarity=0.375  Sum_probs=206.6

Q ss_pred             CCCcccEEEEEEeCC--eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717          139 DSSSGSVKSVTFCDG--KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT  216 (437)
Q Consensus       139 ~~h~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  216 (437)
                      ..|.-+|.+++++++  ..++++.+|+|.-|++.+++....+..-+..   ..     ..+....    .....|...+.
T Consensus       139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev---~k-----~~~~~~k----~~r~~h~keil  206 (479)
T KOG0299|consen  139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEV---LK-----SHGNPLK----ESRKGHVKEIL  206 (479)
T ss_pred             ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchh---hh-----hccCCCC----cccccccceeE
Confidence            579999999999977  4999999999999999988744222111000   00     0000000    00026999999


Q ss_pred             EEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEe
Q 013717          217 GLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATL  293 (437)
Q Consensus       217 ~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~  293 (437)
                      ++++++  ++|++|+.|..|.||+.++++.++.+.+|.+.|.+++|-.... +++++.|+.|++|++...    ..+.++
T Consensus       207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~----s~vetl  282 (479)
T KOG0299|consen  207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL----SYVETL  282 (479)
T ss_pred             EEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh----HHHHHH
Confidence            999988  9999999999999999999999999999999999999986555 999999999999976533    467788


Q ss_pred             eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCC
Q 013717          294 EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~  372 (437)
                      .+|...|..|....-++.+-+|+.|+++++|++....     ...+.++.+.+-|+++-.+ .+++|+.+|.|.+|++..
T Consensus       283 yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-----qlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~K  357 (479)
T KOG0299|consen  283 YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-----QLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLK  357 (479)
T ss_pred             hCCccceeeechhcccceEEeccccceeEEEeccccc-----eeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecc
Confidence            8999999999999888888888899999999995432     2225677888888887654 999999999999999987


Q ss_pred             CCCeeeeeee-cCC-----------CCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCCCCe
Q 013717          373 DGRFGCLAVL-EGH-----------TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSSPL  430 (437)
Q Consensus       373 ~~~~~~~~~~-~~h-----------~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  430 (437)
                      .+   ++.+. .+|           ...|++++..|..+     ++++|+.+|.||+|.+..+.....|+
T Consensus       358 Kk---plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-----L~asGS~~G~vrLW~i~~g~r~i~~l  419 (479)
T KOG0299|consen  358 KK---PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-----LLASGSWSGCVRLWKIEDGLRAINLL  419 (479)
T ss_pred             cC---ceeEeeccccccCCccccccccceeeeEecccCc-----eEEecCCCCceEEEEecCCcccccee
Confidence            66   23222 122           23799999999875     89999999999999999985544444

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=6.1e-25  Score=178.06  Aligned_cols=271  Identities=16%  Similarity=0.176  Sum_probs=208.4

Q ss_pred             ccccceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEec--C-eEEEEeCCCCceee
Q 013717           57 QSNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASS--H-EINVYDRTGTTWTS  131 (437)
Q Consensus        57 ~~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~--d-~v~vwd~~~~~~~~  131 (437)
                      ....++.|+++...+++.+.|-++++++.....+....-.+.-.|..+.|.  ...++.++.  | +||..++.+  .+.
T Consensus        15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d--Nky   92 (311)
T KOG1446|consen   15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD--NKY   92 (311)
T ss_pred             CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec--Cce
Confidence            345689999999999999999999999997744444333777778888886  566666664  6 999999999  466


Q ss_pred             eeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717          132 INTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI  209 (437)
Q Consensus       132 ~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (437)
                      ++.+   .||...|..|+.+|..  +++++.|++|++||++..++...+.                              
T Consensus        93 lRYF---~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~------------------------------  139 (311)
T KOG1446|consen   93 LRYF---PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN------------------------------  139 (311)
T ss_pred             EEEc---CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe------------------------------
Confidence            7777   7999999999999654  9999999999999999766544332                              


Q ss_pred             cCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc--ceEEEee---cccccEEEEEEecCCe-EEEEeCCCeEEEecCC
Q 013717          210 EHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL--RCLESIK---AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKP  281 (437)
Q Consensus       210 ~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~--~~~~~~~---~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~  281 (437)
                        ...-...+|+|  -++|++.....|++||++..  .+..++.   ......+.|.|+|||+ ++.++..+.+.+.|.-
T Consensus       140 --~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf  217 (311)
T KOG1446|consen  140 --LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAF  217 (311)
T ss_pred             --cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEcc
Confidence              22334567888  44555555559999999865  2333443   3467899999999999 8889999999999876


Q ss_pred             CCcccceeeEEeeCcccc---EEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecc-cccceEEEEeeCCEEE
Q 013717          282 FNEKRHALIATLEKHKSA---VNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRG-HGKAILCLINVAGLLM  357 (437)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~l~  357 (437)
                      .+.    ....+..+...   .....|.||++++++|+.||+|++|+++++.....    +.+ +...+.++.|+|.+..
T Consensus       218 ~G~----~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~----~~~~~~~~~~~~~fnP~~~m  289 (311)
T KOG1446|consen  218 DGT----VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAV----LRGPNGGPVSCVRFNPRYAM  289 (311)
T ss_pred             CCc----EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeE----ecCCCCCCccccccCCceee
Confidence            554    45555544332   36788999999999999999999999998874444    334 6888899999999877


Q ss_pred             EEeCCCcEEEeeCCC
Q 013717          358 SGSADRTVRIWQRGS  372 (437)
Q Consensus       358 ~~~~dg~i~iwd~~~  372 (437)
                      -.+.+..+.+|=...
T Consensus       290 f~sa~s~l~fw~p~~  304 (311)
T KOG1446|consen  290 FVSASSNLVFWLPDE  304 (311)
T ss_pred             eeecCceEEEEeccc
Confidence            788888899996553

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.95  E-value=7.1e-26  Score=201.01  Aligned_cols=360  Identities=16%  Similarity=0.228  Sum_probs=256.5

Q ss_pred             ceeeccccccccccCCCceeEEecC--CCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeec
Q 013717           61 SLQTLPSVPSLQKLSPDETINFSSA--SHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINT  134 (437)
Q Consensus        61 ~~~~~~~~~~~~s~s~dg~i~~~~~--~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~  134 (437)
                      .-.+.|+.+.+.+-+..|-.++|..  .......... ||.+.|..++|+  |++|.+.+.| +-|+|-.-.. ...-..
T Consensus       321 g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~-q~~wHE  399 (764)
T KOG1063|consen  321 GGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGR-QQEWHE  399 (764)
T ss_pred             eEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccccc-ccceee
Confidence            3456778888999999999999993  2333444444 999999999999  9999999999 9999876532 222333


Q ss_pred             cccCCCCcccEEEEEEeC-Ce-EEEEecCCeEEEEeCCCCccc----------ccc------cccCccccceeeecC---
Q 013717          135 FNDNDSSSGSVKSVTFCD-GK-IFTAHQDCKIRVWQLTPTKHH----------KLK------TTLPTVNDRLLRFML---  193 (437)
Q Consensus       135 ~~~~~~h~~~v~~l~~~~-~~-l~s~~~dg~i~iwd~~~~~~~----------~~~------~~~~~~~~~~~~~~~---  193 (437)
                      +...+-|...++|+++-+ +. +++|.....+|+++....-..          ...      ...+...-....++.   
T Consensus       400 iaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~  479 (764)
T KOG1063|consen  400 IARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGET  479 (764)
T ss_pred             ecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccc
Confidence            333366999999999986 44 999999999999987532100          000      000000000000000   


Q ss_pred             -CCCe---------------eE-----------EeeccceeeecCCCcEEEEEeCC--CeEEEEECC-----CcEEEEEC
Q 013717          194 -PNSY---------------VT-----------VRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWD-----KSLKIWRA  239 (437)
Q Consensus       194 -~~~~---------------~~-----------~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d-----g~i~iwd~  239 (437)
                       ....               +.           .--.+.+.+.||...|.+++.+|  +++++++..     ..|++|+.
T Consensus       480 ~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t  559 (764)
T KOG1063|consen  480 NTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNT  559 (764)
T ss_pred             ccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEec
Confidence             0000               00           00111244579999999999998  888888754     45999999


Q ss_pred             CCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC
Q 013717          240 SDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD  318 (437)
Q Consensus       240 ~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  318 (437)
                      .+...++.+..|.-.|+.|+|+||++ |++.+.|+++.+|....+..........+.|..-|.+..|+|++.+|++++.|
T Consensus       560 ~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRD  639 (764)
T KOG1063|consen  560 ANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRD  639 (764)
T ss_pred             cchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCC
Confidence            99999999999999999999999999 99999999999998754443333344467899999999999999999999999


Q ss_pred             CcEEEEECCCCccceEEeeeecccccceEEEEeeCC-------EEEEEeCCCcEEEeeCCCC------CCeee---eeee
Q 013717          319 RSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-------LLMSGSADRTVRIWQRGSD------GRFGC---LAVL  382 (437)
Q Consensus       319 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~l~~~~~dg~i~iwd~~~~------~~~~~---~~~~  382 (437)
                      .+|++|.................+...|+++++.+-       .+++|-+.|.|.+|.....      ..+..   +...
T Consensus       640 K~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~  719 (764)
T KOG1063|consen  640 KKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCAT  719 (764)
T ss_pred             ceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccc
Confidence            999999988763222222134457788888877632       7889999999999996521      11111   2223


Q ss_pred             cCCCCCeeEEEEEccC-----CCCceEEEEEecCCCcEEEEeec
Q 013717          383 EGHTKPVKSLTAVTEE-----GQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       383 ~~h~~~v~~l~~~~~~-----~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      .+|...|+.+.|.|..     ...+...|++|++|..+|+++++
T Consensus       720 ~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  720 IGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             cChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence            4577889999999874     12344678999999999999875

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=4.8e-26  Score=183.58  Aligned_cols=274  Identities=16%  Similarity=0.293  Sum_probs=217.9

Q ss_pred             cceeeccccccccccCCCceeEEecCC-----------------Ccceeeeec-CccCCeEEEEee--CCEEEEEecC-e
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSAS-----------------HLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-E  118 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~-----------------~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~  118 (437)
                      -...|.|....+++++.|-.|.+.+..                 ...+.+++| .|.+.|+++.|+  ...|++|+.| +
T Consensus       116 R~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~t  195 (430)
T KOG0640|consen  116 RAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNT  195 (430)
T ss_pred             eeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCe
Confidence            466899999999999999999999874                 234678888 999999999999  8899999999 9


Q ss_pred             EEEEeCCCCceee-eeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCC
Q 013717          119 INVYDRTGTTWTS-INTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPN  195 (437)
Q Consensus       119 v~vwd~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (437)
                      |++||+.....+. .+.+    ....+|.+|.|.|.+  |+.|....++++||+++.++.......              
T Consensus       196 vKlFDfsK~saKrA~K~~----qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd--------------  257 (430)
T KOG0640|consen  196 VKLFDFSKTSAKRAFKVF----QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD--------------  257 (430)
T ss_pred             EEEEecccHHHHHHHHHh----hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc--------------
Confidence            9999998742222 2222    356799999999776  888888899999999988754333211              


Q ss_pred             CeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee-cc-cccEEEEEEecCCe-EEEEe
Q 013717          196 SYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK-AH-EDAVNAVAVSAGGT-VYTGS  270 (437)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~-~~~v~~~~~~~~~~-l~~~~  270 (437)
                                   .+|.+.|+++.+++  ++.++|+.||.|++||--.++|+.++. .| ...|.+..|..+++ +++.+
T Consensus       258 -------------~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG  324 (430)
T KOG0640|consen  258 -------------DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG  324 (430)
T ss_pred             -------------cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC
Confidence                         25999999999998  899999999999999999999998886 44 45788999999999 99999


Q ss_pred             CCCeEEEecCCCCcccceeeEEeeCcc-----ccEEEEEEccCCCEEEEEeC-CCcEEEEECCCCccceEEeeeeccccc
Q 013717          271 ADRKIRVWAKPFNEKRHALIATLEKHK-----SAVNALALSDDGTVLFSGAC-DRSILVWDREDSANHMVVTGALRGHGK  344 (437)
Q Consensus       271 ~dg~v~iwd~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~  344 (437)
                      .|..+++|.+.++.    .+..+.+..     .--+...|+....+++.-.+ .+.+.-||.++......+   ..+|.+
T Consensus       325 ~DS~vkLWEi~t~R----~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~---slgHn~  397 (430)
T KOG0640|consen  325 KDSTVKLWEISTGR----MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL---SLGHNG  397 (430)
T ss_pred             CcceeeeeeecCCc----eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc---ccCCCC
Confidence            99999999887654    455554321     11234557766667766544 577999999987654333   357999


Q ss_pred             ceEEEEeeCC--EEEEEeCCCcEEEeeCC
Q 013717          345 AILCLINVAG--LLMSGSADRTVRIWQRG  371 (437)
Q Consensus       345 ~i~~~~~~~~--~l~~~~~dg~i~iwd~~  371 (437)
                      .+.++..++.  .+++++.|-.+|+|--+
T Consensus       398 a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  398 AVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             CceEEEeCCCCCceeeecccceeeeeeec
Confidence            9999988876  89999999999999654

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.95  E-value=1.4e-26  Score=203.67  Aligned_cols=281  Identities=20%  Similarity=0.286  Sum_probs=207.9

Q ss_pred             CCEEEEEecC-eEEEEeCCCCcee-eeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCc
Q 013717          108 HNFLYAASSH-EINVYDRTGTTWT-SINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPT  183 (437)
Q Consensus       108 ~~~l~s~~~d-~v~vwd~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  183 (437)
                      ...|+.+.++ .|.++|......+ ....+.....|.+.|..+.|.++.  |++++.|.++++||+++.+....      
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~------  137 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG------  137 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc------
Confidence            5789999999 9999999885444 223344456899999999999865  99999999999999998764332      


Q ss_pred             cccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcc-----------------
Q 013717          184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLR-----------------  243 (437)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~-----------------  243 (437)
                                            ..+.+|...|.+++|.+   ..|++|+.||.|.|||++-..                 
T Consensus       138 ----------------------~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~  195 (720)
T KOG0321|consen  138 ----------------------RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNT  195 (720)
T ss_pred             ----------------------eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccC
Confidence                                  23468999999999987   899999999999999986421                 


Q ss_pred             ----------eEEEeeccccc----EEEEEEecCCeEEEEeC-CCeEEEecCCCCccccee--eE--EeeCc---cccEE
Q 013717          244 ----------CLESIKAHEDA----VNAVAVSAGGTVYTGSA-DRKIRVWAKPFNEKRHAL--IA--TLEKH---KSAVN  301 (437)
Q Consensus       244 ----------~~~~~~~~~~~----v~~~~~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~--~~--~~~~~---~~~i~  301 (437)
                                .+...+.+...    |+.+.|-.+..||+++. |+.|+|||++.+....+.  ..  .+.-|   .-.+.
T Consensus       196 ~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~  275 (720)
T KOG0321|consen  196 APTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV  275 (720)
T ss_pred             CCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence                      01111223333    44455543444998888 999999999866532211  11  11112   33577


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccc----eEEEEeeCCEEEEEeCCCcEEEeeCCCCCCee
Q 013717          302 ALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKA----ILCLINVAGLLMSGSADRTVRIWQRGSDGRFG  377 (437)
Q Consensus       302 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~----i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  377 (437)
                      ++.....|.+|++.+.|+.|++|++.......  ...+.++...    -.++.+++.++++|+.|...++|.+.+.+  .
T Consensus       276 nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP--~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--~  351 (720)
T KOG0321|consen  276 NLILDSSGTYLFASCTDNSIYFYNMRSLSISP--VAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--A  351 (720)
T ss_pred             EEEecCCCCeEEEEecCCcEEEEeccccCcCc--hhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--C
Confidence            88888888999999999999999998654322  2222222211    14566778899999999999999999866  5


Q ss_pred             eeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          378 CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       378 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      ....+.+|...|++++|.|..-.    -++++++|-.+++|++..+-
T Consensus       352 ~~~~l~Ght~eVt~V~w~pS~~t----~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  352 PPALLLGHTREVTTVRWLPSATT----PVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             ChhhhhCcceEEEEEeeccccCC----CceeeccCcceEEEeccCch
Confidence            77888999999999999987644    48888999999999996553

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.95  E-value=2.8e-24  Score=184.30  Aligned_cols=310  Identities=17%  Similarity=0.252  Sum_probs=231.1

Q ss_pred             cCCCceeEEecCCCcceeeeecCccCCeEEEEee---CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEE
Q 013717           74 LSPDETINFSSASHLCINSVQLGHKLPIGCIAVH---HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTF  150 (437)
Q Consensus        74 ~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~---~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~  150 (437)
                      .+.++.+.+|+.+..........-++.|....|+   .+++++.+.+.+..|++.++.+.....+... .....|.|++|
T Consensus       176 ~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek-~ekk~Vl~v~F  254 (626)
T KOG2106|consen  176 DSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEK-REKKFVLCVTF  254 (626)
T ss_pred             CCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeecccc-ccceEEEEEEE
Confidence            3667788999988766665555677889999999   7889999888999999998754333322221 23378999999


Q ss_pred             eCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEE
Q 013717          151 CDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSV  228 (437)
Q Consensus       151 ~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~  228 (437)
                      .++. +++|..+|.|.||+..+.+..+...                              .|.+.|.+++.-. ..|++|
T Consensus       255 ~engdviTgDS~G~i~Iw~~~~~~~~k~~~------------------------------aH~ggv~~L~~lr~GtllSG  304 (626)
T KOG2106|consen  255 LENGDVITGDSGGNILIWSKGTNRISKQVH------------------------------AHDGGVFSLCMLRDGTLLSG  304 (626)
T ss_pred             cCCCCEEeecCCceEEEEeCCCceEEeEee------------------------------ecCCceEEEEEecCccEeec
Confidence            9877 9999999999999997665333222                              4999999998877 888889


Q ss_pred             ECCCcEEEEECCCc----------------------------------------ceEEEeecccccEEEEEEecCCe-EE
Q 013717          229 SWDKSLKIWRASDL----------------------------------------RCLESIKAHEDAVNAVAVSAGGT-VY  267 (437)
Q Consensus       229 ~~dg~i~iwd~~~~----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~-l~  267 (437)
                      +.|..|..||-.-.                                        .......+|.+....++.+|+.. ++
T Consensus       305 gKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~  384 (626)
T KOG2106|consen  305 GKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLL  384 (626)
T ss_pred             CccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhhee
Confidence            99999999983210                                        00112236777889999999887 99


Q ss_pred             EEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceE
Q 013717          268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAIL  347 (437)
Q Consensus       268 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~  347 (437)
                      +++.|+.+++|+ . .    ++.... .-..+..++.|+|.| .++.|...|...+.|.++..    +..... ...++.
T Consensus       385 T~gqdk~v~lW~-~-~----k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~----lv~~~~-d~~~ls  451 (626)
T KOG2106|consen  385 TCGQDKHVRLWN-D-H----KLEWTK-IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD----LVTIHT-DNEQLS  451 (626)
T ss_pred             eccCcceEEEcc-C-C----ceeEEE-EecCceeEeeccCcc-eEEEeeccceEEEEecccce----eEEEEe-cCCceE
Confidence            999999999996 1 2    122221 245778999999999 99999999999999998733    221111 255555


Q ss_pred             EEEee--CCEEEEEeCCCcEEEeeCCCCCC-eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          348 CLINV--AGLLMSGSADRTVRIWQRGSDGR-FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       348 ~~~~~--~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      ++.++  |.+||.|+.|+.|+||.+....+ +..+...  |..+|+.+.|++|+.     +|.+-+.|-.|..| .....
T Consensus       452 ~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~--~gs~ithLDwS~Ds~-----~~~~~S~d~eiLyW-~~~~~  523 (626)
T KOG2106|consen  452 VVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC--SGSPITHLDWSSDSQ-----FLVSNSGDYEILYW-KPSEC  523 (626)
T ss_pred             EEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee--cCceeEEeeecCCCc-----eEEeccCceEEEEE-ccccC
Confidence            55554  66999999999999999987652 2223333  338999999999984     89999999999999 66666


Q ss_pred             CCCCCeecccc
Q 013717          425 PNSSPLNLQKW  435 (437)
Q Consensus       425 ~~~~~~~~~~w  435 (437)
                      +...+..-.+|
T Consensus       524 ~~~ts~kDvkW  534 (626)
T KOG2106|consen  524 KQITSVKDVKW  534 (626)
T ss_pred             cccceecceee
Confidence            66666655666

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=7.6e-25  Score=198.45  Aligned_cols=336  Identities=18%  Similarity=0.227  Sum_probs=249.5

Q ss_pred             ceeeccccccccccCCCceeEEecCCCcceeeeecCc-cCCeEEEEee--C-CEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717           61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGH-KLPIGCIAVH--H-NFLYAASSH-EINVYDRTGTTWTSINTF  135 (437)
Q Consensus        61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h-~~~V~~l~~~--~-~~l~s~~~d-~v~vwd~~~~~~~~~~~~  135 (437)
                      ++...|-...++-+..+|+|.++++.. .+.+..+.| .++|+++.|.  | ..||+|+.. .+.+||++..+...... 
T Consensus       207 ~ieqsPaLDVVaiG~~~G~ViifNlK~-dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~-  284 (910)
T KOG1539|consen  207 AIEQSPALDVVAIGLENGTVIIFNLKF-DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTR-  284 (910)
T ss_pred             EeccCCcceEEEEeccCceEEEEEccc-CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeee-
Confidence            556677788889899999999999976 455666766 5999999998  4 567777776 99999999854443333 


Q ss_pred             ccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccc-cccccCcc--ccceeeecCCCCe-------------
Q 013717          136 NDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHK-LKTTLPTV--NDRLLRFMLPNSY-------------  197 (437)
Q Consensus       136 ~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~-------------  197 (437)
                         ..|.+.|....|.++.  +++++.|+.+++|=.+++.-.. .++.-.++  +.....++..+..             
T Consensus       285 ---nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~  361 (910)
T KOG1539|consen  285 ---NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRS  361 (910)
T ss_pred             ---ccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhh
Confidence               4699999999999887  8899999999999665332110 00000000  0000000000000             


Q ss_pred             -----------------------------------------------------eE---------Eeeccc----eeeecC
Q 013717          198 -----------------------------------------------------VT---------VRRHKK----KLWIEH  211 (437)
Q Consensus       198 -----------------------------------------------------~~---------~~~~~~----~~~~~~  211 (437)
                                                                           ++         .+....    .....+
T Consensus       362 fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~  441 (910)
T KOG1539|consen  362 FSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDP  441 (910)
T ss_pred             hhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecC
Confidence                                                                 00         000000    111122


Q ss_pred             C------CcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEe---ecccccEEEEEEecCCe-EEEEeCCCeEEEec
Q 013717          212 G------DAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESI---KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWA  279 (437)
Q Consensus       212 ~------~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd  279 (437)
                      .      ..+++++.+.  ++.+.|+..|.|-+|++++|-....+   ..|..+|+.++...-++ +++++.+|.+.+||
T Consensus       442 ~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~  521 (910)
T KOG1539|consen  442 KRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWD  521 (910)
T ss_pred             ccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEe
Confidence            2      5677777766  89999999999999999999888888   48999999999988777 99999999999998


Q ss_pred             CCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEE
Q 013717          280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLM  357 (437)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~  357 (437)
                      .....    ++..++ ....+.++..+.....++.+..|-.|+++|..+.+    ..+.+.+|...|+.++|+++  +|+
T Consensus       522 f~~k~----l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k----vvR~f~gh~nritd~~FS~DgrWli  592 (910)
T KOG1539|consen  522 FKKKV----LKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK----VVREFWGHGNRITDMTFSPDGRWLI  592 (910)
T ss_pred             cCCcc----eeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhh----hhHHhhccccceeeeEeCCCCcEEE
Confidence            86432    444444 46678888888888899999999999999997654    66678899999999988865  999


Q ss_pred             EEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC-CcEEEEe
Q 013717          358 SGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD-GEIRAWQ  419 (437)
Q Consensus       358 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-g~i~iw~  419 (437)
                      +++.|++|++||+.++.   ++-.+. -..+.+.+.|+|+++     +|+|+..| .-|++|-
T Consensus       593 sasmD~tIr~wDlpt~~---lID~~~-vd~~~~sls~SPngD-----~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  593 SASMDSTIRTWDLPTGT---LIDGLL-VDSPCTSLSFSPNGD-----FLATVHVDQNGIYLWS  646 (910)
T ss_pred             EeecCCcEEEEeccCcc---eeeeEe-cCCcceeeEECCCCC-----EEEEEEecCceEEEEE
Confidence            99999999999999987   554443 457899999999995     89999999 6799996

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1.1e-25  Score=209.88  Aligned_cols=275  Identities=19%  Similarity=0.285  Sum_probs=219.6

Q ss_pred             ccceeeccccccccccC--CCceeEEecCCCc-----------ceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEE
Q 013717           59 NLSLQTLPSVPSLQKLS--PDETINFSSASHL-----------CINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINV  121 (437)
Q Consensus        59 ~~~~~~~~~~~~~~s~s--~dg~i~~~~~~~~-----------~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~v  121 (437)
                      .+++..+|+...+++++  .||.+.+|+.+..           .+.+.+. .|.+.|+|+.|+  |++||+|++| .|.|
T Consensus        16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~i   95 (942)
T KOG0973|consen   16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMI   95 (942)
T ss_pred             EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEE
Confidence            57889999999999999  9999999997332           2333444 899999999999  9999999999 9999


Q ss_pred             EeCCC----------------CceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCc
Q 013717          122 YDRTG----------------TTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPT  183 (437)
Q Consensus       122 wd~~~----------------~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  183 (437)
                      |+...                ..|+....+   .+|.+.|..++|+|+.  |++++.|++|.+||..+.+....+     
T Consensus        96 W~~~~~~~~~~fgs~g~~~~vE~wk~~~~l---~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl-----  167 (942)
T KOG0973|consen   96 WERAEIGSGTVFGSTGGAKNVESWKVVSIL---RGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVL-----  167 (942)
T ss_pred             eeecccCCcccccccccccccceeeEEEEE---ecCCCccceeccCCCccEEEEecccceEEEEccccceeeeee-----
Confidence            99882                123444444   7899999999999765  999999999999999887544433     


Q ss_pred             cccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecc------cccE
Q 013717          184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAH------EDAV  255 (437)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~v  255 (437)
                                               .+|...|..+.|+|  ++|++-+.|++|+||++.+....+.+..+      ...+
T Consensus       168 -------------------------~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f  222 (942)
T KOG0973|consen  168 -------------------------RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFF  222 (942)
T ss_pred             -------------------------ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCccee
Confidence                                     47999999999999  99999999999999998887777666532      3457


Q ss_pred             EEEEEecCCe-EEEEeC----CCeEEEecCCCCcccceeeEEeeCccccEEEEEEccC-----CC------------EEE
Q 013717          256 NAVAVSAGGT-VYTGSA----DRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD-----GT------------VLF  313 (437)
Q Consensus       256 ~~~~~~~~~~-l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~------------~l~  313 (437)
                      .-+.|+|||. |++...    -..+.|.    ....++.-..+-+|.+++.+++|+|.     .+            .+|
T Consensus       223 ~RlSWSPDG~~las~nA~n~~~~~~~Ii----eR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~A  298 (942)
T KOG0973|consen  223 LRLSWSPDGHHLASPNAVNGGKSTIAII----ERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAA  298 (942)
T ss_pred             eecccCCCcCeecchhhccCCcceeEEE----ecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEE
Confidence            8899999999 666432    3457777    34556677788899999999999981     11            678


Q ss_pred             EEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCC
Q 013717          314 SGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSD  373 (437)
Q Consensus       314 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~  373 (437)
                      +|+.|++|.||.....+..... +.+  ....|..++|+++  .|++++.||+|.++..+..
T Consensus       299 vgSqDrSlSVW~T~~~RPl~vi-~~l--f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  299 VGSQDRSLSVWNTALPRPLFVI-HNL--FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             EecCCccEEEEecCCCCchhhh-hhh--hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence            8999999999999766544332 222  3567888888755  9999999999999988753

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=1.2e-25  Score=196.32  Aligned_cols=307  Identities=18%  Similarity=0.251  Sum_probs=227.1

Q ss_pred             eeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe---EEEEecCCe
Q 013717           91 NSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCK  163 (437)
Q Consensus        91 ~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~  163 (437)
                      +...+ ||++.|.||..+  |.+|++|+.| +|+||.+.++  +++.++    ...+.|.||+|+|..   +++++.+..
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg--Rcvr~~----~~d~~I~~vaw~P~~~~~vLAvA~~~~  465 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG--RCVRTV----QFDSEIRSVAWNPLSDLCVLAVAVGEC  465 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc--eEEEEE----eecceeEEEEecCCCCceeEEEEecCc
Confidence            33344 999999999988  9999999999 9999999995  556655    246799999999664   666666666


Q ss_pred             EEEEeCCCCccccc------ccccCcccc---ceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECC-
Q 013717          164 IRVWQLTPTKHHKL------KTTLPTVND---RLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWD-  231 (437)
Q Consensus       164 i~iwd~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d-  231 (437)
                      +.|-+..-+..+..      +...+....   ....+....  ..-.....++...|...|..+.|+.  .||++...+ 
T Consensus       466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~--~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~  543 (733)
T KOG0650|consen  466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRAS--LDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS  543 (733)
T ss_pred             eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhh--hhhhccceEEEEecCCccceeeeecCCceEEEeccCC
Confidence            77776554422211      111110000   001111110  0001112456678999999999998  899988654 


Q ss_pred             --CcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccC
Q 013717          232 --KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD  308 (437)
Q Consensus       232 --g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  308 (437)
                        ..|.|+++...+...-|+...+.|.++.|+|... |++++ -..|++||+...    .+++.+......|..++.+|.
T Consensus       544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kq----elvKkL~tg~kwiS~msihp~  618 (733)
T KOG0650|consen  544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQ----ELVKKLLTGSKWISSMSIHPN  618 (733)
T ss_pred             CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHH----HHHHHHhcCCeeeeeeeecCC
Confidence              5688999988777777766788899999999887 55554 568999988643    345555556678999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeC------CCCCCeeeee
Q 013717          309 GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQR------GSDGRFGCLA  380 (437)
Q Consensus       309 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~------~~~~~~~~~~  380 (437)
                      |..|+.|+.|+.+..||+.-...   ....+..|...+..+++++.  ++++|+.||++.||.-      .......++.
T Consensus       619 GDnli~gs~d~k~~WfDldlssk---Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK  695 (733)
T KOG0650|consen  619 GDNLILGSYDKKMCWFDLDLSSK---PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLK  695 (733)
T ss_pred             CCeEEEecCCCeeEEEEcccCcc---hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeee
Confidence            99999999999999999985543   33446679999999999987  9999999999999853      2233356788


Q ss_pred             eecCCCCC----eeEEEEEccCCCCceEEEEEecCCCcEEEE
Q 013717          381 VLEGHTKP----VKSLTAVTEEGQNGVVSVFSGSLDGEIRAW  418 (437)
Q Consensus       381 ~~~~h~~~----v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  418 (437)
                      .+.+|...    |....|+|..+     +|++++.||+|++|
T Consensus       696 ~L~gH~~~~~~gVLd~~wHP~qp-----WLfsAGAd~tirlf  732 (733)
T KOG0650|consen  696 RLRGHEKTNDLGVLDTIWHPRQP-----WLFSAGADGTIRLF  732 (733)
T ss_pred             eccCceeecccceEeecccCCCc-----eEEecCCCceEEee
Confidence            99999765    99999999986     79999999999998

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=1.9e-25  Score=199.06  Aligned_cols=351  Identities=14%  Similarity=0.109  Sum_probs=242.1

Q ss_pred             ccccccccCCCceeEEecCCCcceeeeec-Ccc-----------------------CCeEEEEee--CCEEEEEecC-eE
Q 013717           67 SVPSLQKLSPDETINFSSASHLCINSVQL-GHK-----------------------LPIGCIAVH--HNFLYAASSH-EI  119 (437)
Q Consensus        67 ~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~-----------------------~~V~~l~~~--~~~l~s~~~d-~v  119 (437)
                      +...++-++.+|.|++++.....-.-..- .|.                       -...++.|+  .+.|...-.| .+
T Consensus       269 s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSl  348 (1080)
T KOG1408|consen  269 SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSL  348 (1080)
T ss_pred             ecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceE
Confidence            56778888899999999874321111100 111                       112355677  7888888888 99


Q ss_pred             EEEeCCCCceeeeeccccCCCCcccEEEEEEeC-------------CeEEEEecCCeEEEEeCCCCcccccccccCcccc
Q 013717          120 NVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD-------------GKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVND  186 (437)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-------------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  186 (437)
                      +|||+..  ...+......--|...|+.+.-.|             +.+++++.|++|++|+++.......+..-.-..+
T Consensus       349 YvWDvrD--~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~  426 (1080)
T KOG1408|consen  349 YVWDVRD--VNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSAN  426 (1080)
T ss_pred             EEEeccc--cccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhh
Confidence            9999987  333333333345888888886543             2299999999999999986432222111000000


Q ss_pred             ceeeecCCCCee-------EEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEE
Q 013717          187 RLLRFMLPNSYV-------TVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNA  257 (437)
Q Consensus       187 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  257 (437)
                      .....+..+...       ...........+....+.+++++|  .+|++|..-|+++||++...+....+..|+..|.|
T Consensus       427 l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilc  506 (1080)
T KOG1408|consen  427 LSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILC  506 (1080)
T ss_pred             hhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEE
Confidence            000001111100       011111122244566899999999  99999999999999999999999999999999999


Q ss_pred             EEEecCC---e-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC--CEEEEEeCCCcEEEEECCCCcc
Q 013717          258 VAVSAGG---T-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG--TVLFSGACDRSILVWDREDSAN  331 (437)
Q Consensus       258 ~~~~~~~---~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~  331 (437)
                      +.|+...   + |++++.|.-|++||+..+.   .++.++.+|...|+++.|.-.|  ..+++++.|..|.+=-......
T Consensus       507 LeyS~p~~~~kLLASasrdRlIHV~Dv~rny---~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~  583 (1080)
T KOG1408|consen  507 LEYSFPVLTNKLLASASRDRLIHVYDVKRNY---DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS  583 (1080)
T ss_pred             EeecCchhhhHhhhhccCCceEEEEeccccc---chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccC
Confidence            9998532   3 9999999999999976543   6788899999999999999877  6888999998775433221111


Q ss_pred             ceEEe-eeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEE
Q 013717          332 HMVVT-GALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFS  408 (437)
Q Consensus       332 ~~~~~-~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s  408 (437)
                      ...+. +...-....+..++.++.  ++++++.|..|+||++.++++.+..+--++|.+....+...|.+     .||++
T Consensus       584 g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg-----iY~at  658 (1080)
T KOG1408|consen  584 GRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG-----IYLAT  658 (1080)
T ss_pred             ceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCc-----cEEEE
Confidence            11111 111112344566666655  99999999999999999998555555556688888888899988     48999


Q ss_pred             ecCCCcEEEEeeccCCCCC
Q 013717          409 GSLDGEIRAWQVSVSCPNS  427 (437)
Q Consensus       409 ~~~dg~i~iw~~~~~~~~~  427 (437)
                      ...|.++.++|+-+++.+.
T Consensus       659 Scsdktl~~~Df~sgEcvA  677 (1080)
T KOG1408|consen  659 SCSDKTLCFVDFVSGECVA  677 (1080)
T ss_pred             eecCCceEEEEeccchhhh
Confidence            9999999999999987543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.3e-24  Score=190.12  Aligned_cols=274  Identities=20%  Similarity=0.248  Sum_probs=225.5

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeeeec--CccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL--GHKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTF  135 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~--~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~  135 (437)
                      -++++....+.++..-.+|.|.+|++...+-+...+  +.+..|.+++|. +..|++.+.+ .|.-||+.+.  +....+
T Consensus        29 ~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l--k~~~~~  106 (691)
T KOG2048|consen   29 VSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTL--KQKYNI  106 (691)
T ss_pred             EEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccC--ceeEEe
Confidence            467788888889988899999999999988888888  457899999999 8999999988 9999999984  444443


Q ss_pred             ccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717          136 NDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD  213 (437)
Q Consensus       136 ~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (437)
                         +...+.|.+++.+|..  ++.|+.||.+...+...++....                            ..+....+
T Consensus       107 ---d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~----------------------------r~l~rq~s  155 (691)
T KOG2048|consen  107 ---DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYK----------------------------RSLMRQKS  155 (691)
T ss_pred             ---cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEE----------------------------eecccccc
Confidence               4578999999999765  88899999777777766542211                            12223568


Q ss_pred             cEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee--------cccccEEEEEEecCCeEEEEeCCCeEEEecCCCC
Q 013717          214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK--------AHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFN  283 (437)
Q Consensus       214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~  283 (437)
                      .|.+++|++  ..++.|+.||.|++||+..+..+....        ....-|+++.+-.++.|++|..-|+|.+||...+
T Consensus       156 RvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~g  235 (691)
T KOG2048|consen  156 RVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFG  235 (691)
T ss_pred             eEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCc
Confidence            999999999  559999999999999999988766221        1334588899988999999999999999976544


Q ss_pred             cccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCC
Q 013717          284 EKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADR  363 (437)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg  363 (437)
                          .+++.+..|.+.|.+++..+++.++++++.|+.|.-|...+.+..+........|...+.+++..+..+++|+.|.
T Consensus       236 ----TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~  311 (691)
T KOG2048|consen  236 ----TLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDF  311 (691)
T ss_pred             ----chhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceee
Confidence                4778888899999999999999999999999999999988776656666667788889999999999999999998


Q ss_pred             cEEEeeC
Q 013717          364 TVRIWQR  370 (437)
Q Consensus       364 ~i~iwd~  370 (437)
                      .+.+-..
T Consensus       312 ~l~i~~s  318 (691)
T KOG2048|consen  312 TLAICSS  318 (691)
T ss_pred             EEEEccc
Confidence            8777543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.2e-25  Score=188.31  Aligned_cols=298  Identities=19%  Similarity=0.282  Sum_probs=224.6

Q ss_pred             ceeEEecCCCcceeeeecCc-cCCeEEE-EeeCCEEEEEecC--eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC
Q 013717           78 ETINFSSASHLCINSVQLGH-KLPIGCI-AVHHNFLYAASSH--EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG  153 (437)
Q Consensus        78 g~i~~~~~~~~~~~~~~~~h-~~~V~~l-~~~~~~l~s~~~d--~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  153 (437)
                      .++.+|++.....+.+..+- ...-.++ +..+.|++++...  .|.+|.+.........     .--.++|.+++-+|.
T Consensus        18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~-----~v~Pg~v~al~s~n~   92 (476)
T KOG0646|consen   18 INCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQY-----IVLPGPVHALASSNL   92 (476)
T ss_pred             cceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhh-----cccccceeeeecCCC
Confidence            45889999887666665532 2222223 3347888888866  9999999874222211     235688999999977


Q ss_pred             e--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE
Q 013717          154 K--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS  229 (437)
Q Consensus       154 ~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~  229 (437)
                      +  |+.|+..|.|++|.+.+|..+..+.                              .|-..|+|+.|+.  .+|++|+
T Consensus        93 G~~l~ag~i~g~lYlWelssG~LL~v~~------------------------------aHYQ~ITcL~fs~dgs~iiTgs  142 (476)
T KOG0646|consen   93 GYFLLAGTISGNLYLWELSSGILLNVLS------------------------------AHYQSITCLKFSDDGSHIITGS  142 (476)
T ss_pred             ceEEEeecccCcEEEEEeccccHHHHHH------------------------------hhccceeEEEEeCCCcEEEecC
Confidence            6  5555599999999999998766554                              5999999999987  9999999


Q ss_pred             CCCcEEEEECC---------CcceEEEeecccccEEEEEEecCC---eEEEEeCCCeEEEecCCCCcccceeeEEeeCcc
Q 013717          230 WDKSLKIWRAS---------DLRCLESIKAHEDAVNAVAVSAGG---TVYTGSADRKIRVWAKPFNEKRHALIATLEKHK  297 (437)
Q Consensus       230 ~dg~i~iwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  297 (437)
                      .||.|.+|++.         +-+++..+..|.-+|+++...+.|   ++++++.|.++++||+..+.    ++..+. ..
T Consensus       143 kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~----LLlti~-fp  217 (476)
T KOG0646|consen  143 KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV----LLLTIT-FP  217 (476)
T ss_pred             CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce----eeEEEe-cC
Confidence            99999999873         235678888999999999988764   39999999999999987653    454444 56


Q ss_pred             ccEEEEEEccCCCEEEEEeCCCcEEEEECCCCc------------cceEEeeeeccccc--ceEEEEee--CCEEEEEeC
Q 013717          298 SAVNALALSDDGTVLFSGACDRSILVWDREDSA------------NHMVVTGALRGHGK--AILCLINV--AGLLMSGSA  361 (437)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------~~~~~~~~~~~~~~--~i~~~~~~--~~~l~~~~~  361 (437)
                      ..+.+++.+|-++.+++|+.+|.|.+.++....            ........+.+|..  .|+|++.+  +.+|++|+.
T Consensus       218 ~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~  297 (476)
T KOG0646|consen  218 SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE  297 (476)
T ss_pred             CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC
Confidence            789999999999999999999999999886533            11122334567877  88887754  679999999


Q ss_pred             CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717          362 DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       362 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                      ||.++|||+.+.+   +++++....++|+.+.+.|-...    .+..-+..-.+-.|++..
T Consensus       298 dg~VcvWdi~S~Q---~iRtl~~~kgpVtnL~i~~~~~~----~~l~~~~~ps~~~~~lkr  351 (476)
T KOG0646|consen  298 DGKVCVWDIYSKQ---CIRTLQTSKGPVTNLQINPLERG----IILFEHKQPSLPNPHLKR  351 (476)
T ss_pred             CCCEEEEecchHH---HHHHHhhhccccceeEeeccccc----eecccccCccCCchHhhc
Confidence            9999999999876   88888777899999999665432    233333344455555443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.94  E-value=4.9e-25  Score=174.17  Aligned_cols=224  Identities=17%  Similarity=0.210  Sum_probs=187.5

Q ss_pred             CCCcccEEEEEEeCC--eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717          139 DSSSGSVKSVTFCDG--KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT  216 (437)
Q Consensus       139 ~~h~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  216 (437)
                      .+|..+++.|.|+-+  .|.+++.|.+..+|-..+++.+..+                              .+|.+.|+
T Consensus         7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty------------------------------~GHtGavW   56 (327)
T KOG0643|consen    7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY------------------------------DGHTGAVW   56 (327)
T ss_pred             ccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee------------------------------cCCCceEE
Confidence            689999999999944  4999999999999998777655444                              48999999


Q ss_pred             EEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeC------CCeEEEecCCCCcc---
Q 013717          217 GLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSA------DRKIRVWAKPFNEK---  285 (437)
Q Consensus       217 ~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~------dg~v~iwd~~~~~~---  285 (437)
                      |+..+.  +.+++|+.|.++++||+++|+++..++ ...+|..+.|+++|.++..+.      .+.|.++|++....   
T Consensus        57 ~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~  135 (327)
T KOG0643|consen   57 CCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDID  135 (327)
T ss_pred             EEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhc
Confidence            999887  999999999999999999999999997 677899999999999554444      36799999884331   


Q ss_pred             cceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCC
Q 013717          286 RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADR  363 (437)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg  363 (437)
                      ...++..+..+.+.++.+.|.|-+++|++|..||.|.+||++++..   +......|...|..+.++++  ++++++.|.
T Consensus       136 s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~---~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt  212 (327)
T KOG0643|consen  136 SEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE---LVDSDEEHSSKINDLQFSRDRTYFITGSKDT  212 (327)
T ss_pred             ccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce---eeechhhhccccccccccCCcceEEecccCc
Confidence            2345666677889999999999999999999999999999998753   44445668889988888766  999999999


Q ss_pred             cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCC
Q 013717          364 TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ  400 (437)
Q Consensus       364 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  400 (437)
                      +-++||..+-+   +++++. -..||++.+++|..+.
T Consensus       213 takl~D~~tl~---v~Kty~-te~PvN~aaisP~~d~  245 (327)
T KOG0643|consen  213 TAKLVDVRTLE---VLKTYT-TERPVNTAAISPLLDH  245 (327)
T ss_pred             cceeeecccee---eEEEee-ecccccceecccccce
Confidence            99999999855   666665 4679999999998764

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=1.2e-24  Score=193.39  Aligned_cols=350  Identities=18%  Similarity=0.221  Sum_probs=249.3

Q ss_pred             ccccccccCCCceeEEecCCCcc--------------------e---ee-------eec-CccCCeEEEEee--CCEEEE
Q 013717           67 SVPSLQKLSPDETINFSSASHLC--------------------I---NS-------VQL-GHKLPIGCIAVH--HNFLYA  113 (437)
Q Consensus        67 ~~~~~~s~s~dg~i~~~~~~~~~--------------------~---~~-------~~~-~h~~~V~~l~~~--~~~l~s  113 (437)
                      +.-.+++.|+|..|++|.+....                    .   .+       ..+ ||.+.|+++.|+  +..|.+
T Consensus       205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS  284 (764)
T KOG1063|consen  205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS  284 (764)
T ss_pred             CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhee
Confidence            45689999999999999873222                    1   11       223 999999999999  668999


Q ss_pred             EecC-eEEEEeCCC--CceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccce
Q 013717          114 ASSH-EINVYDRTG--TTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRL  188 (437)
Q Consensus       114 ~~~d-~v~vwd~~~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  188 (437)
                      ++.| ++.+|....  |-+.....+....+..+......|+++.  +++-+..|..++|.............+.++.+..
T Consensus       285 ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V  364 (764)
T KOG1063|consen  285 ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGV  364 (764)
T ss_pred             cccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccc
Confidence            9999 999998775  4566666665555667789999999877  8888999999999944433333333333333222


Q ss_pred             eee--cCCCCeeEEeec-----------cc------eeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCC------
Q 013717          189 LRF--MLPNSYVTVRRH-----------KK------KLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASD------  241 (437)
Q Consensus       189 ~~~--~~~~~~~~~~~~-----------~~------~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~------  241 (437)
                      ..+  ...+.++.....           .+      ..-+-|...++|+++-+  ..+++|.....+|+|+...      
T Consensus       365 ~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l  444 (764)
T KOG1063|consen  365 KDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSL  444 (764)
T ss_pred             eeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHH
Confidence            211  111222211110           11      11134777888998866  6778888888899997642      


Q ss_pred             -------------------------------------c---------------------------------ceEEEeecc
Q 013717          242 -------------------------------------L---------------------------------RCLESIKAH  251 (437)
Q Consensus       242 -------------------------------------~---------------------------------~~~~~~~~~  251 (437)
                                                           |                                 ..++.+.+|
T Consensus       445 ~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH  524 (764)
T KOG1063|consen  445 MAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH  524 (764)
T ss_pred             HHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccC
Confidence                                                 0                                 011224478


Q ss_pred             cccEEEEEEecCCe-EEEEeCC-----CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717          252 EDAVNAVAVSAGGT-VYTGSAD-----RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD  325 (437)
Q Consensus       252 ~~~v~~~~~~~~~~-l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (437)
                      ...|.+++.+|++. +|+++..     -.|++|+    ...+.....+.+|.-.|+.++|+|||++|++.+.|.++.+|.
T Consensus       525 GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~----t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~  600 (764)
T KOG1063|consen  525 GYEVYALAISPTGNLIASACKSSLKEHAVIRLWN----TANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYE  600 (764)
T ss_pred             ceeEEEEEecCCCCEEeehhhhCCccceEEEEEe----ccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeee
Confidence            88999999999999 7777654     4589994    444556667889999999999999999999999999999999


Q ss_pred             CCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeee--eecCCCCCeeEEEEEccCCCC
Q 013717          326 REDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLA--VLEGHTKPVKSLTAVTEEGQN  401 (437)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~  401 (437)
                      .........-......|..-|...+|.++  +++|++.|.+|++|....... +.+.  ....+..+|+++++.|-....
T Consensus       601 ~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d-~~i~~~a~~~~~~aVTAv~~~~~~~~e  679 (764)
T KOG1063|consen  601 VQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD-KYISRFACLKFSLAVTAVAYLPVDHNE  679 (764)
T ss_pred             eecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh-hhhhhhchhccCCceeeEEeecccccc
Confidence            85432222122236779988998888876  899999999999999887621 1121  344588999999999865433


Q ss_pred             ceEEEEEecCCCcEEEEeec
Q 013717          402 GVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       402 ~~~~l~s~~~dg~i~iw~~~  421 (437)
                      ...+++.|-..|.|.+|+..
T Consensus       680 ~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  680 KGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             ccceEEEEecccEEEEEecc
Confidence            33467888889999999976

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.6e-24  Score=189.91  Aligned_cols=282  Identities=17%  Similarity=0.268  Sum_probs=224.8

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC-eEEEEecCCeEEEEeCCC
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG-KIFTAHQDCKIRVWQLTP  171 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~~~dg~i~iwd~~~  171 (437)
                      --...|.||||+  .+.||.+-.+ .|.+|++... +-....+.  .+....|.+|+|.++ +|.+.+.+|.|..||+.+
T Consensus        23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~vi~--g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-WFLEPVIH--GPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHT   99 (691)
T ss_pred             eeccceEEEEEeccCCceeeeccCCcEEEEccCCC-ceeeEEEe--cCCCCceeeEEEccCCeEEeecCCceEEEEeccc
Confidence            445789999999  7778988888 9999999885 55555553  245678999999955 499999999999999998


Q ss_pred             CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEE--
Q 013717          172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLES--  247 (437)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~--  247 (437)
                      .+......                              ...+.|++++.+|  ..++.|+.||.+..++...++....  
T Consensus       100 lk~~~~~d------------------------------~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~  149 (691)
T KOG2048|consen  100 LKQKYNID------------------------------SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS  149 (691)
T ss_pred             CceeEEec------------------------------CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEee
Confidence            87554443                              3667999999999  8899999999888888877765443  


Q ss_pred             eecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEee----CccccEEEEEEccCCCEEEEEeCCCcEE
Q 013717          248 IKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLE----KHKSAVNALALSDDGTVLFSGACDRSIL  322 (437)
Q Consensus       248 ~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~  322 (437)
                      +...++.|.++.|+|++. ++.|+.||.|++||...+.........+.    ....-|.++.|-.++ .|++|+.-|+|.
T Consensus       150 l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~  228 (691)
T KOG2048|consen  150 LMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVT  228 (691)
T ss_pred             cccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEE
Confidence            334578999999999999 99999999999999876653331111111    133457888888665 799999999999


Q ss_pred             EEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCC-eeeeeeecCCCCCeeEEEEEccCC
Q 013717          323 VWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGR-FGCLAVLEGHTKPVKSLTAVTEEG  399 (437)
Q Consensus       323 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~  399 (437)
                      +||...+.    +...+..|...|.+++...+  .+++++.|+.|.-|...+.+. +........|...|.+++..++  
T Consensus       229 FWd~~~gT----LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--  302 (691)
T KOG2048|consen  229 FWDSIFGT----LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--  302 (691)
T ss_pred             EEcccCcc----hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--
Confidence            99998776    66667789999999987754  999999999999998877653 4455566778899999999986  


Q ss_pred             CCceEEEEEecCCCcEEEEeecc
Q 013717          400 QNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       400 ~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                           .+++||.|+.+.+-....
T Consensus       303 -----~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  303 -----ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             -----eEEecceeeEEEEccccc
Confidence                 599999999998876655

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=5.6e-25  Score=186.82  Aligned_cols=269  Identities=19%  Similarity=0.280  Sum_probs=199.8

Q ss_pred             EEEEecC--eEEEEeCCCCceeeeeccccCCCC-cccEEEEEE-eCCeEEEE-ecCCeEEEEeCCCCcccccccccCccc
Q 013717          111 LYAASSH--EINVYDRTGTTWTSINTFNDNDSS-SGSVKSVTF-CDGKIFTA-HQDCKIRVWQLTPTKHHKLKTTLPTVN  185 (437)
Q Consensus       111 l~s~~~d--~v~vwd~~~~~~~~~~~~~~~~~h-~~~v~~l~~-~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~  185 (437)
                      ..+++.|  .+.+||+.+|.  ...+++   +. ...-.++.. .+..++++ ..-..|.+|.+..........      
T Consensus        10 ~sssS~d~~~~~~~dl~TGt--~~~~yk---g~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~------   78 (476)
T KOG0646|consen   10 CSSSSFDPINCIVWDLRTGT--SLLQYK---GSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYI------   78 (476)
T ss_pred             EeccCCCCcceeEEecCCCc--eeEEec---CcccccchhhhhhchhheeeecccCccccccccCchhhhhhhc------
Confidence            3445556  79999999963  233331   11 111122222 23444444 445579999987665443221      


Q ss_pred             cceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecC
Q 013717          186 DRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAG  263 (437)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  263 (437)
                                              --.++|.+++-+|  .+++.|+..|.|++|.+.+|+.+..+..|-..|+|+.|+.|
T Consensus        79 ------------------------v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~d  134 (476)
T KOG0646|consen   79 ------------------------VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDD  134 (476)
T ss_pred             ------------------------ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCC
Confidence                                    1456899999988  55555559999999999999999999999999999999999


Q ss_pred             Ce-EEEEeCCCeEEEecCCC-----CcccceeeEEeeCccccEEEEEEccC--CCEEEEEeCCCcEEEEECCCCccceEE
Q 013717          264 GT-VYTGSADRKIRVWAKPF-----NEKRHALIATLEKHKSAVNALALSDD--GTVLFSGACDRSILVWDREDSANHMVV  335 (437)
Q Consensus       264 ~~-l~~~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (437)
                      |. |++|+.||.|.+|++..     +....+++..+..|.-+|+++...+.  ..+|++++.|.++++||+..+.....+
T Consensus       135 gs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti  214 (476)
T KOG0646|consen  135 GSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI  214 (476)
T ss_pred             CcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence            99 99999999999997632     12244678889999999999998875  358999999999999999887644333


Q ss_pred             eeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCCCCC-------------CeeeeeeecCCCC--CeeEEEEEccC
Q 013717          336 TGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDG-------------RFGCLAVLEGHTK--PVKSLTAVTEE  398 (437)
Q Consensus       336 ~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~-------------~~~~~~~~~~h~~--~v~~l~~~~~~  398 (437)
                      .     ....+.++..+  +..+++|+.+|.|.+.++..-.             ....+..+.||.+  .|+|++.+-|+
T Consensus       215 ~-----fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg  289 (476)
T KOG0646|consen  215 T-----FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG  289 (476)
T ss_pred             e-----cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc
Confidence            2     23455666655  4599999999999988765422             1235667889998  99999999998


Q ss_pred             CCCceEEEEEecCCCcEEEEeeccCC
Q 013717          399 GQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       399 ~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      .     +|++|+.||.|+|||+.+..
T Consensus       290 t-----lLlSGd~dg~VcvWdi~S~Q  310 (476)
T KOG0646|consen  290 T-----LLLSGDEDGKVCVWDIYSKQ  310 (476)
T ss_pred             c-----EEEeeCCCCCEEEEecchHH
Confidence            5     89999999999999987654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.94  E-value=3.1e-24  Score=174.48  Aligned_cols=287  Identities=17%  Similarity=0.316  Sum_probs=215.6

Q ss_pred             CccCCeEEEEee-------CCEEEEEecCeEEEEeCCCCce-eeeeccccCCCCcccEEEEEEe---CC-e--EEEEecC
Q 013717           96 GHKLPIGCIAVH-------HNFLYAASSHEINVYDRTGTTW-TSINTFNDNDSSSGSVKSVTFC---DG-K--IFTAHQD  161 (437)
Q Consensus        96 ~h~~~V~~l~~~-------~~~l~s~~~d~v~vwd~~~~~~-~~~~~~~~~~~h~~~v~~l~~~---~~-~--l~s~~~d  161 (437)
                      +|+.+|..++|+       .+.+|+++.+.+.+|......+ ..+... ....|......++|+   .+ .  +++++.-
T Consensus        36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y-~D~d~~Esfytcsw~yd~~~~~p~la~~G~~  114 (385)
T KOG1034|consen   36 DHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSY-ADEDHDESFYTCSWSYDSNTGNPFLAAGGYL  114 (385)
T ss_pred             cCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeec-cCCCCCcceEEEEEEecCCCCCeeEEeecce
Confidence            899999999998       5778888888999998876432 233333 223577888888887   22 2  8888999


Q ss_pred             CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEE
Q 013717          162 CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWR  238 (437)
Q Consensus       162 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd  238 (437)
                      |.|+|.|+.+++....+                              .+|...|+.+.++|   +++++++.|..|++|+
T Consensus       115 GvIrVid~~~~~~~~~~------------------------------~ghG~sINeik~~p~~~qlvls~SkD~svRlwn  164 (385)
T KOG1034|consen  115 GVIRVIDVVSGQCSKNY------------------------------RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWN  164 (385)
T ss_pred             eEEEEEecchhhhccce------------------------------eccCccchhhhcCCCCCcEEEEecCCceEEEEe
Confidence            99999999988765544                              37999999999998   6999999999999999


Q ss_pred             CCCcceEEEee---cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc---------------------e---ee
Q 013717          239 ASDLRCLESIK---AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH---------------------A---LI  290 (437)
Q Consensus       239 ~~~~~~~~~~~---~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~---------------------~---~~  290 (437)
                      +++..++..+-   +|.+.|.++.|+++|. |++++.|..|++|++....-..                     .   ..
T Consensus       165 I~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f  244 (385)
T KOG1034|consen  165 IQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF  244 (385)
T ss_pred             ccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence            99999998874   7999999999999998 9999999999999986221000                     0   00


Q ss_pred             EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCC-C---------ccceEEeeeecccccceEEEEee----CCEE
Q 013717          291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRED-S---------ANHMVVTGALRGHGKAILCLINV----AGLL  356 (437)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~---------~~~~~~~~~~~~~~~~i~~~~~~----~~~l  356 (437)
                      .+-.-|...|.|+.|-  |+++++=+.++.|..|..-. .         +........+.-....|.-+.|.    .+.|
T Consensus       245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l  322 (385)
T KOG1034|consen  245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML  322 (385)
T ss_pred             cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence            1223466777778876  67999999999999998721 1         11222334444445555444433    4499


Q ss_pred             EEEeCCCcEEEeeCCCCCCeeeeeeecC--CCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          357 MSGSADRTVRIWQRGSDGRFGCLAVLEG--HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       357 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      |.|...|.|++||++..++.. ..++..  ....|...+|+.++.     +|+...+|++|.-||--
T Consensus       323 a~gnq~g~v~vwdL~~~ep~~-~ttl~~s~~~~tVRQ~sfS~dgs-----~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  323 ALGNQSGKVYVWDLDNNEPPK-CTTLTHSKSGSTVRQTSFSRDGS-----ILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             hhccCCCcEEEEECCCCCCcc-CceEEeccccceeeeeeecccCc-----EEEEEeCCCcEEEEEee
Confidence            999999999999999877432 222222  245799999999985     79999999999999853

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=9.3e-25  Score=184.36  Aligned_cols=275  Identities=15%  Similarity=0.222  Sum_probs=201.9

Q ss_pred             ceeeccccccccccCCCce-----eEEecCCCcceeeeec-Ccc----CCeEEEEee---------CCEEEEEecC-eEE
Q 013717           61 SLQTLPSVPSLQKLSPDET-----INFSSASHLCINSVQL-GHK----LPIGCIAVH---------HNFLYAASSH-EIN  120 (437)
Q Consensus        61 ~~~~~~~~~~~~s~s~dg~-----i~~~~~~~~~~~~~~~-~h~----~~V~~l~~~---------~~~l~s~~~d-~v~  120 (437)
                      -+...|+.++++.+-....     +++++...    -..+ .|.    ..-.|++|.         |+|+|.|..+ .|.
T Consensus       130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e----~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie  205 (463)
T KOG0270|consen  130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEE----ENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE  205 (463)
T ss_pred             cceeccCCcEEEEeeccCCceEEEEEEEcCCC----cceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence            5566777777665544333     33333322    1122 332    233566663         7899999999 999


Q ss_pred             EEeCCCCc-eeeeecc---------------ccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCccccccccc
Q 013717          121 VYDRTGTT-WTSINTF---------------NDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTL  181 (437)
Q Consensus       121 vwd~~~~~-~~~~~~~---------------~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~  181 (437)
                      |||+.-.. ......+               ....+|+..|.+|.|+...   |++|+.|.+|++||+.+++....+.  
T Consensus       206 IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~--  283 (463)
T KOG0270|consen  206 IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT--  283 (463)
T ss_pred             EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh--
Confidence            99986420 0000000               1124699999999998443   9999999999999999998665544  


Q ss_pred             CccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEE
Q 013717          182 PTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAV  258 (437)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  258 (437)
                                                  .|...|.++.|++   ..|++|+.|++|.+.|.+........-...+.|-.+
T Consensus       284 ----------------------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv  335 (463)
T KOG0270|consen  284 ----------------------------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV  335 (463)
T ss_pred             ----------------------------hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence                                        4899999999998   899999999999999998533322222356789999


Q ss_pred             EEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccC-CCEEEEEeCCCcEEEEECCCCccceEE
Q 013717          259 AVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD-GTVLFSGACDRSILVWDREDSANHMVV  335 (437)
Q Consensus       259 ~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (437)
                      +|.|...  ++++..||.|+-+|+|...   +++.+++.|.++|.++++++. -.++++++.|+.|++|++.........
T Consensus       336 ~w~~~se~~f~~~tddG~v~~~D~R~~~---~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~  412 (463)
T KOG0270|consen  336 AWDPHSENSFFVSTDDGTVYYFDIRNPG---KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK  412 (463)
T ss_pred             EecCCCceeEEEecCCceEEeeecCCCC---CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc
Confidence            9999776  8899999999999998665   688899999999999999985 348899999999999999865544333


Q ss_pred             eeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCC
Q 013717          336 TGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       336 ~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~  374 (437)
                      .+.+  .-+...|+++++.   +++.|+..+.++|||+.+..
T Consensus       413 ~~~~--~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  413 EHSF--KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             cccc--cccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence            3222  1233567777766   88999999999999998755

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=2.4e-26  Score=204.98  Aligned_cols=244  Identities=22%  Similarity=0.374  Sum_probs=204.1

Q ss_pred             EEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe-CCe-EEEEecCCeEEEEeCCCCcccccccccCccccc
Q 013717          111 LYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC-DGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDR  187 (437)
Q Consensus       111 l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  187 (437)
                      +...... .+++||.+..           ..|...|.++..- ..+ +++|+.|..+-+|.+........          
T Consensus         7 ~m~~~~~t~Lr~~~~~~~-----------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S----------   65 (825)
T KOG0267|consen    7 LMKTKRATKLRVWDTREF-----------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS----------   65 (825)
T ss_pred             cceeeeeeccccccchhh-----------hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe----------
Confidence            3344444 6777776441           3488888888864 223 99999999999999875543222          


Q ss_pred             eeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe
Q 013717          188 LLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT  265 (437)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  265 (437)
                                          +.+|+.+|.++.|+.  .+|++|+.+|+|++||++..+.++++.+|...+.++.|+|.+.
T Consensus        66 --------------------~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~  125 (825)
T KOG0267|consen   66 --------------------LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGE  125 (825)
T ss_pred             --------------------eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceE
Confidence                                247999999999998  8899999999999999999999999999999999999999999


Q ss_pred             -EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccccc
Q 013717          266 -VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGK  344 (437)
Q Consensus       266 -l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  344 (437)
                       ++.|+.|+.+++||++...    +...+.+|...+..+.|+|+|++++.|+.|.+++|||+..++    +...+..|.+
T Consensus       126 ~~a~gStdtd~~iwD~Rk~G----c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk----~~~ef~~~e~  197 (825)
T KOG0267|consen  126 FFASGSTDTDLKIWDIRKKG----CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK----LSKEFKSHEG  197 (825)
T ss_pred             EeccccccccceehhhhccC----ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc----cccccccccc
Confidence             8899999999999987543    677888899999999999999999999999999999998776    6777888999


Q ss_pred             ceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecC
Q 013717          345 AILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSL  411 (437)
Q Consensus       345 ~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~  411 (437)
                      .+..+.+++.  +++.|+.|+++++||+++-   +.+.........|.+++|.|++.     .+.+|..
T Consensus       198 ~v~sle~hp~e~Lla~Gs~d~tv~f~dletf---e~I~s~~~~~~~v~~~~fn~~~~-----~~~~G~q  258 (825)
T KOG0267|consen  198 KVQSLEFHPLEVLLAPGSSDRTVRFWDLETF---EVISSGKPETDGVRSLAFNPDGK-----IVLSGEQ  258 (825)
T ss_pred             cccccccCchhhhhccCCCCceeeeecccee---EEeeccCCccCCceeeeecCCce-----eeecCch
Confidence            9999998876  8899999999999999974   47777777788999999999983     4555543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.8e-25  Score=200.94  Aligned_cols=235  Identities=17%  Similarity=0.257  Sum_probs=185.1

Q ss_pred             eEEEEee---CCEEEEEecC-eEEEEeCCCC-ceeeeeccccCCCCcccEEEEEEe---CCeEEEEecCCeEEEEeCCCC
Q 013717          101 IGCIAVH---HNFLYAASSH-EINVYDRTGT-TWTSINTFNDNDSSSGSVKSVTFC---DGKIFTAHQDCKIRVWQLTPT  172 (437)
Q Consensus       101 V~~l~~~---~~~l~s~~~d-~v~vwd~~~~-~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~  172 (437)
                      +..+.|.   .++||+++.+ .|.+||+... +.+.+..   +..|+..++++.|+   |+.|++|+.||+|++||++..
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~---f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~  166 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTV---FNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK  166 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhH---hhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc
Confidence            3445565   7999999999 9999999872 1222223   36899999999998   555999999999999999977


Q ss_pred             cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCc-ceEEEe
Q 013717          173 KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDL-RCLESI  248 (437)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~-~~~~~~  248 (437)
                      +.....                              .+....|.++.|+|   ..++++...|.+++||++.. ++...+
T Consensus       167 ~S~~t~------------------------------~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~  216 (839)
T KOG0269|consen  167 KSKSTF------------------------------RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKL  216 (839)
T ss_pred             cccccc------------------------------cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHh
Confidence            644333                              34677899999998   89999999999999999865 456677


Q ss_pred             ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCC-EEEEEeC--CCcEEEE
Q 013717          249 KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGT-VLFSGAC--DRSILVW  324 (437)
Q Consensus       249 ~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~--dg~i~i~  324 (437)
                      .+|.++|.|+.|+|++. ||+|+.|++|+|||+.....  ..+..+. ...++.++.|-|+.. +|++++.  |-.|+||
T Consensus       217 ~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~--~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VW  293 (839)
T KOG0269|consen  217 TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA--KPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVW  293 (839)
T ss_pred             hcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc--cceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEE
Confidence            79999999999999887 99999999999999875432  2333333 457899999999765 4555543  7889999


Q ss_pred             ECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCC
Q 013717          325 DREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       325 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~  374 (437)
                      |++.   +......+..|...+..++|...   .+.+++.||.|..-..++..
T Consensus       294 DvrR---PYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat  343 (839)
T KOG0269|consen  294 DVRR---PYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT  343 (839)
T ss_pred             eecc---ccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence            9984   44455667789999999998763   89999999988766555533

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=8.9e-25  Score=180.76  Aligned_cols=208  Identities=22%  Similarity=0.343  Sum_probs=170.2

Q ss_pred             cCCCcEEEEEeCC----CeEEEEECCCcEEEEECCC----------------cceEEEeecccccEEEEEEec--CCeEE
Q 013717          210 EHGDAVTGLAVNN----GLIYSVSWDKSLKIWRASD----------------LRCLESIKAHEDAVNAVAVSA--GGTVY  267 (437)
Q Consensus       210 ~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~v~~~~~~~--~~~l~  267 (437)
                      .|.+.++.+...+    .+.++=+..|.|+|||+..                .+++.++.+|...=++++|+|  .|.++
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll  228 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL  228 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence            4666666666554    5666678899999999853                356778889999999999999  44599


Q ss_pred             EEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccC-CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccce
Q 013717          268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD-GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI  346 (437)
Q Consensus       268 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i  346 (437)
                      +|..-+.|++|...++.-. .-...+.+|...|-.++|+|. ...|++|+.||+|+|||++.+.....+..  .+|...|
T Consensus       229 sGDc~~~I~lw~~~~g~W~-vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~--kAh~sDV  305 (440)
T KOG0302|consen  229 SGDCVKGIHLWEPSTGSWK-VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST--KAHNSDV  305 (440)
T ss_pred             cCccccceEeeeeccCcee-ecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe--eccCCce
Confidence            9999999999987653211 112345679999999999995 45899999999999999998854443332  7799999


Q ss_pred             EEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          347 LCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       347 ~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      ..++|+..  +||+|+.||+++|||++.-+...++..++-|..+|++|.|+|....    .|+++|.|.+|.+||+....
T Consensus       306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s----~iaasg~D~QitiWDlsvE~  381 (440)
T KOG0302|consen  306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS----VIAASGEDNQITIWDLSVEA  381 (440)
T ss_pred             eeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc----eEEeccCCCcEEEEEeeccC
Confidence            99999977  8999999999999999987766789999999999999999998775    79999999999999998654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.1e-23  Score=178.81  Aligned_cols=283  Identities=15%  Similarity=0.216  Sum_probs=217.4

Q ss_pred             cCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCC
Q 013717           98 KLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTP  171 (437)
Q Consensus        98 ~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~  171 (437)
                      .+.|+++.|+  ...|.+|+.| .++||.++......+..+   .-...+|.+.+|.+++   +++++....+..||+.+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~---~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~  289 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI---HLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET  289 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheee---eeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence            5789999999  7899999999 999999988655555544   3356799999999765   89999999999999988


Q ss_pred             CcccccccccCccccceeeecCCCCeeEEeeccceeeecCC-CcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEe
Q 013717          172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG-DAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESI  248 (437)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~  248 (437)
                      .+..+....                            .++. ..+..+.+++  ++|+..+..|.|.+....+++.+..+
T Consensus       290 ak~~k~~~~----------------------------~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~  341 (514)
T KOG2055|consen  290 AKVTKLKPP----------------------------YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF  341 (514)
T ss_pred             cccccccCC----------------------------CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee
Confidence            764433221                            1222 3344556666  89999999999999999999999999


Q ss_pred             ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCcc-ccEEEEEEccCCCEEEEEeCCCcEEEEEC
Q 013717          249 KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHK-SAVNALALSDDGTVLFSGACDRSILVWDR  326 (437)
Q Consensus       249 ~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (437)
                      + ..+.|..++|+.+++ |++.+.+|.|.+||++.+    .+++.+.... -.-++++.+++|.+||+|+..|.|-|||.
T Consensus       342 K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~----~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~  416 (514)
T KOG2055|consen  342 K-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN----SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG  416 (514)
T ss_pred             e-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCc----ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence            7 677899999999999 888889999999999765    3566665322 23467888899999999999999999997


Q ss_pred             CCCc--cceEEeeeecccccceEEEEeeCC--EEEEEeC--CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCC
Q 013717          327 EDSA--NHMVVTGALRGHGKAILCLINVAG--LLMSGSA--DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ  400 (437)
Q Consensus       327 ~~~~--~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  400 (437)
                      .+..  ........+..-...|..+.|+++  +||.++.  +..+|+-.+.+-..+.-..+....-+.|+||+|+|.++ 
T Consensus       417 ~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG-  495 (514)
T KOG2055|consen  417 NSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSG-  495 (514)
T ss_pred             chhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCc-
Confidence            6421  111133334455677888888876  5555554  67899999887554333334444556799999999876 


Q ss_pred             CceEEEEEecCCCcEEEEeec
Q 013717          401 NGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       401 ~~~~~l~s~~~dg~i~iw~~~  421 (437)
                          +|+.|-.+|.|.+|++.
T Consensus       496 ----~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  496 ----YLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ----eEEeecCCCceeeEeec
Confidence                89999999999999985

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.93  E-value=1.3e-23  Score=178.06  Aligned_cols=289  Identities=13%  Similarity=0.183  Sum_probs=204.3

Q ss_pred             CccCCeEEEEee---C-CEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe---EEEEecCCeEEEE
Q 013717           96 GHKLPIGCIAVH---H-NFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVW  167 (437)
Q Consensus        96 ~h~~~V~~l~~~---~-~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw  167 (437)
                      -|.++|++++|+   . .++|+|+.. .|-+||+.+.+ +....+..+..|.++|.+|.|+|..   +++.+.||+|++-
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~-~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~  262 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE-KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ  262 (498)
T ss_pred             ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC-CccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence            788999999999   3 678888877 99999996321 2222233336799999999999654   9999999999999


Q ss_pred             eCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcce-
Q 013717          168 QLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRC-  244 (437)
Q Consensus       168 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~-  244 (437)
                      |++.......+..-                            .....+..+.++.  ..++.+..=|...+||.++... 
T Consensus       263 D~~~~i~e~v~s~~----------------------------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~  314 (498)
T KOG4328|consen  263 DFEGNISEEVLSLD----------------------------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE  314 (498)
T ss_pred             eecchhhHHHhhcC----------------------------ccceeeeeccccCCCccEEEeecccceEEEEeecCCcc
Confidence            99977543333211                            1233455666655  6777777777999999998765 


Q ss_pred             EEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEE
Q 013717          245 LESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSIL  322 (437)
Q Consensus       245 ~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  322 (437)
                      ...+..|+..|..|+++|-..  +++++.|++++|||++.-.....++.....|...|.++.|||.+-.|++.+.|..|+
T Consensus       315 ~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IR  394 (498)
T KOG4328|consen  315 YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIR  394 (498)
T ss_pred             chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceE
Confidence            556667888999999999876  999999999999999865444433344456999999999999887899999999999


Q ss_pred             EEECC----CCccceEEeeeecccccce--EEEEeeC--CEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCC-CeeE-E
Q 013717          323 VWDRE----DSANHMVVTGALRGHGKAI--LCLINVA--GLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTK-PVKS-L  392 (437)
Q Consensus       323 i~d~~----~~~~~~~~~~~~~~~~~~i--~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~v~~-l  392 (437)
                      |||..    .......+.+. ..+...+  ....|++  .++++|-.-..|-|||-..++   .+..+..-.. .|.+ .
T Consensus       395 v~dss~~sa~~~p~~~I~Hn-~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q---~v~el~~P~~~tI~~vn  470 (498)
T KOG4328|consen  395 VFDSSCISAKDEPLGTIPHN-NRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ---MVCELHDPESSTIPSVN  470 (498)
T ss_pred             EeecccccccCCccceeecc-CcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE---EeeeccCccccccccce
Confidence            99984    22122212111 1111222  2233444  499999999999999988755   4555433322 4443 4


Q ss_pred             EEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          393 TAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       393 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      .|+|-+..    +++.++..|.|+||--+
T Consensus       471 ~~HP~~~~----~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  471 EFHPMRDT----LAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             eecccccc----eeccCCccceEEEEecC
Confidence            57887743    44445557888888544

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.8e-23  Score=190.42  Aligned_cols=261  Identities=15%  Similarity=0.205  Sum_probs=207.6

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCC
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPT  172 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~  172 (437)
                      +|+..-+.++|.  |++|++++.| .|++|+..... .....+   ..+...|.+++...+.|++|+.+++|.+|.+..+
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-e~P~ti---~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~   86 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-EEPETI---DISGELVSSIACYSNHFLTGSEQNTVLRYKFPSG   86 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-cCCchh---hccCceeEEEeecccceEEeeccceEEEeeCCCC
Confidence            899999999998  9999999999 99999988742 223333   2378899999999889999999999999999988


Q ss_pred             cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeec
Q 013717          173 KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKA  250 (437)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~  250 (437)
                      +....+.                              ...-++.+++++.  .+++.|+.|-.|++.++.+......+++
T Consensus        87 ~~~~iL~------------------------------Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg  136 (933)
T KOG1274|consen   87 EEDTILA------------------------------RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG  136 (933)
T ss_pred             Cccceee------------------------------eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc
Confidence            7554443                              2456788888887  7999999999999999999999999999


Q ss_pred             ccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEee---C-ccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717          251 HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLE---K-HKSAVNALALSDDGTVLFSGACDRSILVWD  325 (437)
Q Consensus       251 ~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (437)
                      |.++|.++.|+|++. ||+.+.||.|++||+........+.....   . ....+..++|+|+|..|++...|+.|++|+
T Consensus       137 h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~  216 (933)
T KOG1274|consen  137 HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYS  216 (933)
T ss_pred             cCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEc
Confidence            999999999999999 99999999999999975442221111111   1 135577899999988888889999999999


Q ss_pred             CCCCccceEEeeeecccccceEEEEe--eCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCC
Q 013717          326 REDSANHMVVTGALRGHGKAILCLIN--VAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEG  399 (437)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  399 (437)
                      ..+.+....+....  +...+.++.|  +|.|||+++.||.|.|||.++..   .    +.....|.+++|.|+.+
T Consensus       217 r~~we~~f~Lr~~~--~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~---~----~~~~~~Vc~~aw~p~~n  283 (933)
T KOG1274|consen  217 RKGWELQFKLRDKL--SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE---R----HEFKRAVCCEAWKPNAN  283 (933)
T ss_pred             cCCceeheeecccc--cccceEEEEEcCCCcEEeeeccCCcEEEEecccch---h----ccccceeEEEecCCCCC
Confidence            98887666655443  2333555554  56699999999999999999733   1    23346799999999876

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.92  E-value=2.9e-23  Score=177.82  Aligned_cols=285  Identities=17%  Similarity=0.193  Sum_probs=206.0

Q ss_pred             ccCCCceeEEecCCCcceeeeecCc--cCCeEEEEee-CCEEEEEe--cC-eEEEEeCCCCceeeeeccccCCCCcccEE
Q 013717           73 KLSPDETINFSSASHLCINSVQLGH--KLPIGCIAVH-HNFLYAAS--SH-EINVYDRTGTTWTSINTFNDNDSSSGSVK  146 (437)
Q Consensus        73 s~s~dg~i~~~~~~~~~~~~~~~~h--~~~V~~l~~~-~~~l~s~~--~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~  146 (437)
                      .++....+.+||.......-..+.|  ...|.++.|+ .++|++++  .| .|++|.-... ...+.......+.  .-.
T Consensus         7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~-~~~Vp~~~k~~gd--~~~   83 (673)
T KOG4378|consen    7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK-TPEVPRVRKLTGD--NAF   83 (673)
T ss_pred             eeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC-CCccceeeccccc--hHH
Confidence            3455557888988543322222222  2348999998 66576665  45 8889976653 1111111111222  223


Q ss_pred             EEEEe--CCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--
Q 013717          147 SVTFC--DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--  222 (437)
Q Consensus       147 ~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--  222 (437)
                      |++..  .-.+++|+..+.|+|||++.....+.+                              .+|...|+++.++.  
T Consensus        84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~l------------------------------kdh~stvt~v~YN~~D  133 (673)
T KOG4378|consen   84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFL------------------------------KDHQSTVTYVDYNNTD  133 (673)
T ss_pred             HHhhhhcceeeeccCcCceeeehhhHHHHHhhhc------------------------------cCCcceeEEEEecCCc
Confidence            33332  133999999999999999854433333                              36999999999987  


Q ss_pred             CeEEEEECCCcEEEEECCCcceEEEeecc-cccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCcccc
Q 013717          223 GLIYSVSWDKSLKIWRASDLRCLESIKAH-EDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSA  299 (437)
Q Consensus       223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  299 (437)
                      .+|++++..|.|.|..+.++.....+... ...|.-+.|+|..+  |.+++.+|.|.+||+....   ......+.|..+
T Consensus       134 eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s---p~~~~~~~HsAP  210 (673)
T KOG4378|consen  134 EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS---PIFHASEAHSAP  210 (673)
T ss_pred             ceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC---cccchhhhccCC
Confidence            89999999999999999999888888744 45667899999887  8889999999999986443   234445679999


Q ss_pred             EEEEEEccC-CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeee
Q 013717          300 VNALALSDD-GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGC  378 (437)
Q Consensus       300 i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  378 (437)
                      ...|+|+|. ..+|++.+.|..|.+||++..+....+..   .|.-...++..+|.+|++|...|.|..||++..+  .+
T Consensus       211 ~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~P  285 (673)
T KOG4378|consen  211 CRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--AP  285 (673)
T ss_pred             cCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCC--CC
Confidence            999999995 55888999999999999986553333321   2333334444456699999999999999999866  68


Q ss_pred             eeeecCCCCCeeEEEEEccC
Q 013717          379 LAVLEGHTKPVKSLTAVTEE  398 (437)
Q Consensus       379 ~~~~~~h~~~v~~l~~~~~~  398 (437)
                      +.++.+|...|++++|-+..
T Consensus       286 v~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  286 VAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             ceEeeecccceeEEEeeecc
Confidence            99999999999999999863

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=7.4e-24  Score=186.65  Aligned_cols=317  Identities=18%  Similarity=0.229  Sum_probs=208.7

Q ss_pred             ccccccCCCceeEEecCCCccee------eeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCC
Q 013717           69 PSLQKLSPDETINFSSASHLCIN------SVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDND  139 (437)
Q Consensus        69 ~~~~s~s~dg~i~~~~~~~~~~~------~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~  139 (437)
                      ..++.+..||.|.+++.......      ...+.|...|..++|.  ...|++++.| ++++||++..+..-...+   .
T Consensus        65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~---~  141 (720)
T KOG0321|consen   65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLN---L  141 (720)
T ss_pred             ceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceee---c
Confidence            35666788999999988443222      2223999999999999  6789999999 999999998654444333   6


Q ss_pred             CCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCC-CCeeEEeeccceeeecCCCc-
Q 013717          140 SSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLP-NSYVTVRRHKKKLWIEHGDA-  214 (437)
Q Consensus       140 ~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-  214 (437)
                      +|.+.|.+++|.+..   |++|+.||.|.|||++-........ +.   ..+..-... ..-..........+..+... 
T Consensus       142 GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~-~~---~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti  217 (720)
T KOG0321|consen  142 GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEE-FD---NRIYGRHNTAPTPSKPLKKRIRKWKAASNTI  217 (720)
T ss_pred             ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHH-Hh---hhhhccccCCCCCCchhhccccccccccCce
Confidence            899999999998543   9999999999999987543110000 00   000000000 00000011111222233333 


Q ss_pred             ---EEEEEeCC-CeEEEEEC-CCcEEEEECCCcceEEEee--------cc---cccEEEEEEecCCe-EEEEeCCCeEEE
Q 013717          215 ---VTGLAVNN-GLIYSVSW-DKSLKIWRASDLRCLESIK--------AH---EDAVNAVAVSAGGT-VYTGSADRKIRV  277 (437)
Q Consensus       215 ---v~~~~~~~-~~l~~~~~-dg~i~iwd~~~~~~~~~~~--------~~---~~~v~~~~~~~~~~-l~~~~~dg~v~i  277 (437)
                         |+.+.|.. ..|++++. |+.|+|||+++........        .+   .-.+.++.....|. |++.+.|+.|.+
T Consensus       218 ~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~  297 (720)
T KOG0321|consen  218 FSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYF  297 (720)
T ss_pred             eeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEE
Confidence               55566655 88998887 9999999998765433221        12   33577777777777 666667999999


Q ss_pred             ecCCCCcccceeeEEeeCccc--cEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-
Q 013717          278 WAKPFNEKRHALIATLEKHKS--AVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-  354 (437)
Q Consensus       278 wd~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  354 (437)
                      |++.....  .++..+.++..  .-..-..+||+.++++|+.|...++|.+...+....   .+.+|...|+++.|.+. 
T Consensus       298 ynm~s~s~--sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~---~l~Ght~eVt~V~w~pS~  372 (720)
T KOG0321|consen  298 YNMRSLSI--SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA---LLLGHTREVTTVRWLPSA  372 (720)
T ss_pred             EeccccCc--CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh---hhhCcceEEEEEeecccc
Confidence            99875432  23333333322  122334689999999999999999999987655433   36789999999998765 


Q ss_pred             --EEEEEeCCCcEEEeeCCCCCC-----------eeeeeeecCCCCCeeEEEEEcc
Q 013717          355 --LLMSGSADRTVRIWQRGSDGR-----------FGCLAVLEGHTKPVKSLTAVTE  397 (437)
Q Consensus       355 --~l~~~~~dg~i~iwd~~~~~~-----------~~~~~~~~~h~~~v~~l~~~~~  397 (437)
                        -++++++|..++||++..+-.           ......+++|...+..+.++-.
T Consensus       373 ~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~  428 (720)
T KOG0321|consen  373 TTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLR  428 (720)
T ss_pred             CCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhcccccccccccccc
Confidence              678889999999999865331           1123344666666666555543

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=5.8e-24  Score=179.62  Aligned_cols=265  Identities=17%  Similarity=0.215  Sum_probs=191.4

Q ss_pred             ccEEEEEEe---------CCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717          143 GSVKSVTFC---------DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD  213 (437)
Q Consensus       143 ~~v~~l~~~---------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (437)
                      ....|+.|.         ++.++.|+.|..|.|||+.-.........+....         .+.....+.....-.+|+.
T Consensus       174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~---------sk~~~k~~k~~~~~~gHTd  244 (463)
T KOG0270|consen  174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKA---------SKKKKKKGKRSNSASGHTD  244 (463)
T ss_pred             CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhh---------hhhhhhhcccccccccchH
Confidence            344677764         1249999999999999987432211111110000         0000000011112246999


Q ss_pred             cEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccce
Q 013717          214 AVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHA  288 (437)
Q Consensus       214 ~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~  288 (437)
                      .|.+++|+.   +.|++|+.|.+|++||+.++++...+..|.+.|.++.|+|..-  |++|+.|++|.+.|.+.......
T Consensus       245 avl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~  324 (463)
T KOG0270|consen  245 AVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK  324 (463)
T ss_pred             HHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCc
Confidence            999999987   8999999999999999999999999999999999999999775  99999999999999985222211


Q ss_pred             eeEEeeCccccEEEEEEccCC-CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCCCc
Q 013717          289 LIATLEKHKSAVNALALSDDG-TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRT  364 (437)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~  364 (437)
                         .++ ..+.|-.++|.|.. ..++++..||+|+-+|+|...   .....+.+|...|.+++++..   ++++++.|+.
T Consensus       325 ---~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~---~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~  397 (463)
T KOG0270|consen  325 ---EWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG---KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV  397 (463)
T ss_pred             ---eEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCC---CceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence               222 45778999999954 477888899999999999764   244556789999999998754   9999999999


Q ss_pred             EEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCCC
Q 013717          365 VRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSS  428 (437)
Q Consensus       365 i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~  428 (437)
                      |++|++..... ..+..-.-.-+...|.++.|+...    +++.||..+.++|||+.+..++..
T Consensus       398 Vklw~~~~~~~-~~v~~~~~~~~rl~c~~~~~~~a~----~la~GG~k~~~~vwd~~~~~~V~k  456 (463)
T KOG0270|consen  398 VKLWKFDVDSP-KSVKEHSFKLGRLHCFALDPDVAF----TLAFGGEKAVLRVWDIFTNSPVRK  456 (463)
T ss_pred             EEEEeecCCCC-cccccccccccceeecccCCCcce----EEEecCccceEEEeecccChhHHH
Confidence            99999876441 112111111234677778887764    889999999999999998876543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=7.7e-23  Score=165.56  Aligned_cols=285  Identities=16%  Similarity=0.241  Sum_probs=203.2

Q ss_pred             ceeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCe
Q 013717           89 CINSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCK  163 (437)
Q Consensus        89 ~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~  163 (437)
                      ..+..++.|.. -.|+.|+  |.+||+|..| .|.|||+.+.  ...+.+   .+|..+|.+++|++++  |++++.|..
T Consensus        15 Eel~~tld~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--~iar~l---saH~~pi~sl~WS~dgr~LltsS~D~s   88 (405)
T KOG1273|consen   15 EELTHTLDNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTF--RIARML---SAHVRPITSLCWSRDGRKLLTSSRDWS   88 (405)
T ss_pred             HhhceeccCCc-cceEEeccCcceeeeeccCCcEEEEEcccc--chhhhh---hccccceeEEEecCCCCEeeeecCCce
Confidence            44455553433 7899999  9999999999 9999999994  333444   6799999999999665  999999999


Q ss_pred             EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECC
Q 013717          164 IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRAS  240 (437)
Q Consensus       164 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~  240 (437)
                      |.+||+..+.....+.                               ...+|+...|+|   +..++.-.+..-.+.++.
T Consensus        89 i~lwDl~~gs~l~rir-------------------------------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s  137 (405)
T KOG1273|consen   89 IKLWDLLKGSPLKRIR-------------------------------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFS  137 (405)
T ss_pred             eEEEeccCCCceeEEE-------------------------------ccCccceeeeccccCCeEEEEEecCCcEEEEec
Confidence            9999999987655554                               677899999998   555555445445555554


Q ss_pred             CcceEEEee-cc----cccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCcc-ccEEEEEEccCCCEEE
Q 013717          241 DLRCLESIK-AH----EDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHK-SAVNALALSDDGTVLF  313 (437)
Q Consensus       241 ~~~~~~~~~-~~----~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~  313 (437)
                      ..+. ..+. ..    +....+..|.+.|+ +++|...|.+.++|..+-    +++..++-.. ..|..+.++..|+.|+
T Consensus       138 ~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~----e~vas~rits~~~IK~I~~s~~g~~li  212 (405)
T KOG1273|consen  138 DPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL----ECVASFRITSVQAIKQIIVSRKGRFLI  212 (405)
T ss_pred             CCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh----eeeeeeeechheeeeEEEEeccCcEEE
Confidence            4221 1111 11    11223345788888 999999999999976543    5676666555 7899999999999999


Q ss_pred             EEeCCCcEEEEECCCCccc-----eEEeeeec----ccccceEEEEeeCCEEEEEeC-CCcEEEeeCCCCCCeeeeeeec
Q 013717          314 SGACDRSILVWDREDSANH-----MVVTGALR----GHGKAILCLINVAGLLMSGSA-DRTVRIWQRGSDGRFGCLAVLE  383 (437)
Q Consensus       314 ~~~~dg~i~i~d~~~~~~~-----~~~~~~~~----~~~~~i~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~  383 (437)
                      .-+.|..|+.|+++.--..     ....+.+.    ...-.-.|++-+|.|+++|+. ...++||....|.   +++.+.
T Consensus       213 iNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs---LVKILh  289 (405)
T KOG1273|consen  213 INTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGS---LVKILH  289 (405)
T ss_pred             EecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcc---eeeeec
Confidence            9999999999998731100     00111110    011122444445557776664 4579999999887   899999


Q ss_pred             CCC-CCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          384 GHT-KPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       384 ~h~-~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      |.+ ....++.|+|-.+     .+++- ..|.|++|.....+
T Consensus       290 G~kgE~l~DV~whp~rp-----~i~si-~sg~v~iw~~~~~e  325 (405)
T KOG1273|consen  290 GTKGEELLDVNWHPVRP-----IIASI-ASGVVYIWAVVQVE  325 (405)
T ss_pred             CCchhheeeccccccee-----eeeec-cCCceEEEEeeccc
Confidence            887 5688999999874     46666 78999999876543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=2.5e-23  Score=172.24  Aligned_cols=243  Identities=18%  Similarity=0.254  Sum_probs=181.3

Q ss_pred             CccCCeEEEEee--C--CEEEEEecC-eEEEEeCCCC-----------ceeeeeccccCCCCcccEEEEEEeCC---eEE
Q 013717           96 GHKLPIGCIAVH--H--NFLYAASSH-EINVYDRTGT-----------TWTSINTFNDNDSSSGSVKSVTFCDG---KIF  156 (437)
Q Consensus        96 ~h~~~V~~l~~~--~--~~l~s~~~d-~v~vwd~~~~-----------~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~  156 (437)
                      +|.+.|..+...  +  .+.++-+.. .|+||++...           .....+.+....+|.+.=.+|+|+|-   .|+
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll  228 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL  228 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence            888888887776  3  445555566 9999998641           11222233333789988999999973   399


Q ss_pred             EEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCc
Q 013717          157 TAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKS  233 (437)
Q Consensus       157 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~  233 (437)
                      +|..-+.|++|...++.-.....                           -|.+|...|-.++|+|   +.|++|+.||+
T Consensus       229 sGDc~~~I~lw~~~~g~W~vd~~---------------------------Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs  281 (440)
T KOG0302|consen  229 SGDCVKGIHLWEPSTGSWKVDQR---------------------------PFTGHTKSVEDLQWSPTEDGVFASCSCDGS  281 (440)
T ss_pred             cCccccceEeeeeccCceeecCc---------------------------cccccccchhhhccCCccCceEEeeecCce
Confidence            99999999999998865332222                           2246999999999998   89999999999


Q ss_pred             EEEEECCCcc---eEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccC-
Q 013717          234 LKIWRASDLR---CLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD-  308 (437)
Q Consensus       234 i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  308 (437)
                      |+|||++.+.   ++.+ +.|...|+.|.|+.... |++|+.||+++|||++.- ...+++..++.|..+|++|.|+|. 
T Consensus       282 IrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~-~~~~pVA~fk~Hk~pItsieW~p~e  359 (440)
T KOG0302|consen  282 IRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQF-KSGQPVATFKYHKAPITSIEWHPHE  359 (440)
T ss_pred             EEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhc-cCCCcceeEEeccCCeeEEEecccc
Confidence            9999999883   3333 68999999999998777 999999999999999954 344788899999999999999994 


Q ss_pred             CCEEEEEeCCCcEEEEECCCCcc---------------ceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEee
Q 013717          309 GTVLFSGACDRSILVWDREDSAN---------------HMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQ  369 (437)
Q Consensus       309 ~~~l~~~~~dg~i~i~d~~~~~~---------------~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd  369 (437)
                      ...|++++.|.+|.+||+.-..-               +..+..... -+..+..+.|+.+   +|++.+.|| +.||.
T Consensus       360 ~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  360 DSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             CceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence            55888889999999999863211               111111111 1344566677644   888888888 55553

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=1.7e-21  Score=172.82  Aligned_cols=266  Identities=14%  Similarity=0.114  Sum_probs=177.9

Q ss_pred             CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--E-EEEecCCeEEEEeCCCCcccccccccCc
Q 013717          108 HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--I-FTAHQDCKIRVWQLTPTKHHKLKTTLPT  183 (437)
Q Consensus       108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~  183 (437)
                      ++.+++++.| .|++||+.+++  ....+   ..+ ..+.+++|+++.  + ++++.++.|++||..+++....+.    
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~--~~~~~---~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----   70 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLE--VTRTF---PVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP----   70 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCc--eEEEE---ECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc----
Confidence            3578899988 99999998853  33443   223 346789999764  4 567788999999998775433221    


Q ss_pred             cccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEE-EECCCcEEEEECCCcceEEEeecccccEEEEEE
Q 013717          184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYS-VSWDKSLKIWRASDLRCLESIKAHEDAVNAVAV  260 (437)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  260 (437)
                                                .+ ..+..+++++  +.+++ +..++.|++||+.+.+.+..+.. ...+.+++|
T Consensus        71 --------------------------~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~  122 (300)
T TIGR03866        71 --------------------------SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAV  122 (300)
T ss_pred             --------------------------CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEE
Confidence                                      12 2245677877  55544 45689999999999887777652 345788999


Q ss_pred             ecCCe-EEEEeCCC-eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE-eCCCcEEEEECCCCccceEEee
Q 013717          261 SAGGT-VYTGSADR-KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG-ACDRSILVWDREDSANHMVVTG  337 (437)
Q Consensus       261 ~~~~~-l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~  337 (437)
                      +|++. ++++..++ .+.+||.....    ...... ....+..++|+|+|++|+++ ..++.|++||+++++....+..
T Consensus       123 ~~dg~~l~~~~~~~~~~~~~d~~~~~----~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~  197 (300)
T TIGR03866       123 SPDGKIVVNTSETTNMAHFIDTKTYE----IVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITF  197 (300)
T ss_pred             CCCCCEEEEEecCCCeEEEEeCCCCe----EEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeee
Confidence            99998 77777664 56777875432    222222 23346789999999988655 4699999999988754332221


Q ss_pred             eecc-cc--cceEEEEe--eCCEE-EEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEe-c
Q 013717          338 ALRG-HG--KAILCLIN--VAGLL-MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSG-S  410 (437)
Q Consensus       338 ~~~~-~~--~~i~~~~~--~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~-~  410 (437)
                      ...+ +.  .....+.+  +++++ ++.+.++.+.+||+.+.+   .+..+. +...+.+++|+|++.     +|+++ +
T Consensus       198 ~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~---~~~~~~-~~~~~~~~~~~~~g~-----~l~~~~~  268 (300)
T TIGR03866       198 EIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE---VLDYLL-VGQRVWQLAFTPDEK-----YLLTTNG  268 (300)
T ss_pred             cccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc---EEEEEE-eCCCcceEEECCCCC-----EEEEEcC
Confidence            1100 11  11223444  45554 444556789999998765   333332 445799999999885     56654 6


Q ss_pred             CCCcEEEEeeccCCC
Q 013717          411 LDGEIRAWQVSVSCP  425 (437)
Q Consensus       411 ~dg~i~iw~~~~~~~  425 (437)
                      .+|.|++||+++++.
T Consensus       269 ~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       269 VSNDVSVIDVAALKV  283 (300)
T ss_pred             CCCeEEEEECCCCcE
Confidence            799999999998875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.6e-22  Score=184.14  Aligned_cols=241  Identities=19%  Similarity=0.271  Sum_probs=194.9

Q ss_pred             CCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCc-ccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717          140 SSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTK-HHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT  216 (437)
Q Consensus       140 ~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  216 (437)
                      .|....+.|+|.+++  |++++.||.|++|+..... ....+.                              .+...|.
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~------------------------------~~g~~v~   60 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID------------------------------ISGELVS   60 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh------------------------------ccCceeE
Confidence            599999999999766  9999999999999987652 222111                              2778899


Q ss_pred             EEEeCCCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC
Q 013717          217 GLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK  295 (437)
Q Consensus       217 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  295 (437)
                      +++...++|++|+.+++|.+|....++.-..+....-++.+++++.+|. +|.|+.|-.|++.++....    ....+++
T Consensus        61 ~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s----~~~~lrg  136 (933)
T KOG1274|consen   61 SIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS----QEKVLRG  136 (933)
T ss_pred             EEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc----hheeecc
Confidence            9999889999999999999999998877666666777899999999999 9999999999999776443    5667889


Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecc---c-ccceEEEEeeCC--EEEEEeCCCcEEEee
Q 013717          296 HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRG---H-GKAILCLINVAG--LLMSGSADRTVRIWQ  369 (437)
Q Consensus       296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~-~~~i~~~~~~~~--~l~~~~~dg~i~iwd  369 (437)
                      |.++|.++.|+|++++||+.+.||.|+|||+.++.....+......   . ...+..++|+++  .++....|+.|++|+
T Consensus       137 h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~  216 (933)
T KOG1274|consen  137 HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYS  216 (933)
T ss_pred             cCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEc
Confidence            9999999999999999999999999999999987644433322111   1 233455667665  888889999999999


Q ss_pred             CCCCCCeeeeeeecC--CCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717          370 RGSDGRFGCLAVLEG--HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       370 ~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                      ..+..   ....+..  +...+..+.|+|.|     +||++++.||.|.|||+++
T Consensus       217 r~~we---~~f~Lr~~~~ss~~~~~~wsPnG-----~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  217 RKGWE---LQFKLRDKLSSSKFSDLQWSPNG-----KYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             cCCce---eheeecccccccceEEEEEcCCC-----cEEeeeccCCcEEEEeccc
Confidence            88755   4444433  44559999999997     5999999999999999995

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1e-24  Score=194.63  Aligned_cols=224  Identities=21%  Similarity=0.396  Sum_probs=190.0

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCC
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLT  170 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~  170 (437)
                      .|...|.|+..-  ++.+++|+.+ .+-+|.+..  ...+..+   .+|..+|.++.|+...  |++|+.+|+|++||++
T Consensus        26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k--p~~i~S~---~~hespIeSl~f~~~E~LlaagsasgtiK~wDle  100 (825)
T KOG0267|consen   26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK--PNAITSL---TGHESPIESLTFDTSERLLAAGSASGTIKVWDLE  100 (825)
T ss_pred             hhhhhhceeeeeccceeeccCCCceeeccccccC--Cchhhee---eccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence            788888888865  8999999999 999999877  3333333   6899999999999655  8899999999999999


Q ss_pred             CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEe
Q 013717          171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESI  248 (437)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~  248 (437)
                      ..+..+.+                              .+|...+..+.|+|  .+.+.|+.|+.+++||.+..-+.+.+
T Consensus       101 eAk~vrtL------------------------------tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~  150 (825)
T KOG0267|consen  101 EAKIVRTL------------------------------TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY  150 (825)
T ss_pred             hhhhhhhh------------------------------hccccCcceeeeccceEEeccccccccceehhhhccCceeee
Confidence            77654433                              37999999999999  78889999999999999988899999


Q ss_pred             ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECC
Q 013717          249 KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE  327 (437)
Q Consensus       249 ~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (437)
                      .+|...|..++|+|+|+ ++.|+.|..++|||+..+    +....|..|.+.+..+.|+|..-+++.|+.|+++++||++
T Consensus       151 ~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag----k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  151 KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG----KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             cCCcceeEEEeecCCCceeeccCCcceeeeeccccc----ccccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence            99999999999999998 999999999999987654    4788899999999999999999999999999999999997


Q ss_pred             CCccceEEeeeecccccceEEEEeeCC--EEEEEeCC
Q 013717          328 DSANHMVVTGALRGHGKAILCLINVAG--LLMSGSAD  362 (437)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~d  362 (437)
                      +.+    .+.........|.+..|+++  .+++|..+
T Consensus       227 tfe----~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  227 TFE----VISSGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             eeE----EeeccCCccCCceeeeecCCceeeecCchh
Confidence            543    55555556778888888876  55555443

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=4.2e-23  Score=165.58  Aligned_cols=206  Identities=20%  Similarity=0.311  Sum_probs=165.0

Q ss_pred             eeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcc------------eEE---EeecccccEEEEEEecCCe--
Q 013717          206 KLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLR------------CLE---SIKAHEDAVNAVAVSAGGT--  265 (437)
Q Consensus       206 ~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~------------~~~---~~~~~~~~v~~~~~~~~~~--  265 (437)
                      .+...|.+.|+++.+.+   +++++|+.||.|.+||++.-.            ++.   .-.+|+-.|..+.|-|-..  
T Consensus        37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm  116 (397)
T KOG4283|consen   37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM  116 (397)
T ss_pred             ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence            44466999999999988   999999999999999997532            110   0125778899999988544  


Q ss_pred             EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccC---CCEEEEEeCCCcEEEEECCCCccceEEeeeeccc
Q 013717          266 VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD---GTVLFSGACDRSILVWDREDSANHMVVTGALRGH  342 (437)
Q Consensus       266 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  342 (437)
                      +.+++.|.++++||..+.+    ....|+ .++.|.+-+++|-   ..++++|..|-.|++.|+.++.    +.+.+.||
T Consensus       117 FtssSFDhtlKVWDtnTlQ----~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs----~sH~LsGH  187 (397)
T KOG4283|consen  117 FTSSSFDHTLKVWDTNTLQ----EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS----FSHTLSGH  187 (397)
T ss_pred             eecccccceEEEeecccce----eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc----ceeeeccc
Confidence            8899999999999876543    333333 4567888888883   4588889999999999999887    77788999


Q ss_pred             ccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCC------------CeeeeeeecCCCCCeeEEEEEccCCCCceEEEE
Q 013717          343 GKAILCLINVAG---LLMSGSADRTVRIWQRGSDG------------RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVF  407 (437)
Q Consensus       343 ~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~  407 (437)
                      ...|+++.|++.   .|++|+.||.|++||++...            ....++.-.+|.+.|++++|..++.     +++
T Consensus       188 r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~-----~l~  262 (397)
T KOG4283|consen  188 RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR-----YLA  262 (397)
T ss_pred             cCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch-----hhh
Confidence            999999999987   89999999999999998642            1112223346778999999999984     799


Q ss_pred             EecCCCcEEEEeeccCCC
Q 013717          408 SGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       408 s~~~dg~i~iw~~~~~~~  425 (437)
                      +++.|..+++|+...+..
T Consensus       263 ~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  263 SCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             hccCccceEEeecccCcc
Confidence            999999999999998865

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.6e-22  Score=171.70  Aligned_cols=276  Identities=13%  Similarity=0.178  Sum_probs=214.5

Q ss_pred             cccceeeccccccccccCCCceeEEecCCCc-ceeeeec-CccCCeEEEEee--CC-EEEEEecC-eEEEEeCCCCceee
Q 013717           58 SNLSLQTLPSVPSLQKLSPDETINFSSASHL-CINSVQL-GHKLPIGCIAVH--HN-FLYAASSH-EINVYDRTGTTWTS  131 (437)
Q Consensus        58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~-~~~~~~~-~h~~~V~~l~~~--~~-~l~s~~~d-~v~vwd~~~~~~~~  131 (437)
                      ...+++|+|..+.+.+++.|++++++.++.. .+.++.+ --..+|.+.+|.  |. .+++++.. .+..||+.+.+...
T Consensus       215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k  294 (514)
T KOG2055|consen  215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTK  294 (514)
T ss_pred             CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccccc
Confidence            3368999999999999999999999999644 3445555 567899999998  66 88888888 99999999976666


Q ss_pred             eeccccCCCCc-ccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceee
Q 013717          132 INTFNDNDSSS-GSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLW  208 (437)
Q Consensus       132 ~~~~~~~~~h~-~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (437)
                      +...   .++. ..+.....+++.  |+..+..|.|.+.-..+++.+..++                             
T Consensus       295 ~~~~---~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-----------------------------  342 (514)
T KOG2055|consen  295 LKPP---YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-----------------------------  342 (514)
T ss_pred             ccCC---CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-----------------------------
Confidence            6655   3333 456666677544  9999999999999998887665554                             


Q ss_pred             ecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeeccc-ccEEEEEEecCCe-EEEEeCCCeEEEecCCCC-
Q 013717          209 IEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHE-DAVNAVAVSAGGT-VYTGSADRKIRVWAKPFN-  283 (437)
Q Consensus       209 ~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~-  283 (437)
                        -.+.|.+++|+.  +.|++.+.+|.|.+||++...+++.+.... -.-++++.++++. ||+|+..|.|.|||.... 
T Consensus       343 --ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~  420 (514)
T KOG2055|consen  343 --IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF  420 (514)
T ss_pred             --eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhh
Confidence              567888999976  888888899999999999999999887322 1235677778888 999999999999986532 


Q ss_pred             -cccceeeEEeeCccccEEEEEEccCCCEEEEEeC--CCcEEEEECCCCccceEEeeeec---ccccceEEEEeeCC--E
Q 013717          284 -EKRHALIATLEKHKSAVNALALSDDGTVLFSGAC--DRSILVWDREDSANHMVVTGALR---GHGKAILCLINVAG--L  355 (437)
Q Consensus       284 -~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~--~  355 (437)
                       ....+++..+......|+++.|++|++.|+.++.  +..+++.-+.+..    ....+.   ..-+.+.|++|++.  +
T Consensus       421 ~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T----VFsNfP~~n~~vg~vtc~aFSP~sG~  496 (514)
T KOG2055|consen  421 ASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT----VFSNFPTSNTKVGHVTCMAFSPNSGY  496 (514)
T ss_pred             ccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecccee----eeccCCCCCCcccceEEEEecCCCce
Confidence             2234566667777789999999999999988775  6678888775432    222222   23345688888875  9


Q ss_pred             EEEEeCCCcEEEeeCC
Q 013717          356 LMSGSADRTVRIWQRG  371 (437)
Q Consensus       356 l~~~~~dg~i~iwd~~  371 (437)
                      +|.|..+|.+.+|.+.
T Consensus       497 lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  497 LAVGNEAGRVHLFKLH  512 (514)
T ss_pred             EEeecCCCceeeEeec
Confidence            9999999999999875

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=4.7e-23  Score=176.76  Aligned_cols=244  Identities=18%  Similarity=0.283  Sum_probs=193.7

Q ss_pred             CCcccEEEEEEeC-Ce-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEE
Q 013717          140 SSSGSVKSVTFCD-GK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTG  217 (437)
Q Consensus       140 ~h~~~v~~l~~~~-~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  217 (437)
                      .|..-|.++.++. .+ ++||+. |.|+|||+...........++.                         ......|.+
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdc-------------------------l~rdnyiRS  470 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDC-------------------------LNRDNYIRS  470 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccc-------------------------cCcccceee
Confidence            5888999999984 44 777775 7899999986543332222221                         124567888


Q ss_pred             EEeCC--CeEEEEECCCcEEEEECCCcce--EEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEE
Q 013717          218 LAVNN--GLIYSVSWDKSLKIWRASDLRC--LESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIAT  292 (437)
Q Consensus       218 ~~~~~--~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~  292 (437)
                      +...+  +.|++|++-.++.|||+.....  ...+........+++++||.+ .+++..||.|.|||+...    ..++.
T Consensus       471 ckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq----~~Vrq  546 (705)
T KOG0639|consen  471 CKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ----TLVRQ  546 (705)
T ss_pred             eEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc----eeeec
Confidence            88877  8999999999999999976543  333334445688899999999 888999999999999754    47899


Q ss_pred             eeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeC
Q 013717          293 LEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQR  370 (437)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~  370 (437)
                      |++|...+.||.+++||..|.+|+.|++|+.||++.++.....     .....|.++.+.  +++|+.|.+++.+-|-..
T Consensus       547 fqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh-----dF~SQIfSLg~cP~~dWlavGMens~vevlh~  621 (705)
T KOG0639|consen  547 FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-----DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT  621 (705)
T ss_pred             ccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh-----hhhhhheecccCCCccceeeecccCcEEEEec
Confidence            9999999999999999999999999999999999987643321     134567777655  459999999999998887


Q ss_pred             CCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCC
Q 013717          371 GSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNS  427 (437)
Q Consensus       371 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  427 (437)
                      ...+    ...+.-|...|.++.|.+.+     +++++.|.|..+..|+...+....
T Consensus       622 skp~----kyqlhlheScVLSlKFa~cG-----kwfvStGkDnlLnawrtPyGasiF  669 (705)
T KOG0639|consen  622 SKPE----KYQLHLHESCVLSLKFAYCG-----KWFVSTGKDNLLNAWRTPYGASIF  669 (705)
T ss_pred             CCcc----ceeecccccEEEEEEecccC-----ceeeecCchhhhhhccCcccccee
Confidence            7644    56677899999999999998     589999999999999988876543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.90  E-value=4.5e-23  Score=162.84  Aligned_cols=284  Identities=14%  Similarity=0.166  Sum_probs=197.1

Q ss_pred             eeec-CccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC-eEEEEecCCeEEEE
Q 013717           92 SVQL-GHKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG-KIFTAHQDCKIRVW  167 (437)
Q Consensus        92 ~~~~-~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~~~dg~i~iw  167 (437)
                      ...+ +|.+.|+|+.|. .++|.+|..- .|++|++++.+......+    .|...|+.+...++ .+.+-+.|+.+.+|
T Consensus         7 ~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~----~g~~~it~lq~~p~d~l~tqgRd~~L~lw   82 (323)
T KOG0322|consen    7 FFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRL----FGRLFITNLQSIPNDSLDTQGRDPLLILW   82 (323)
T ss_pred             eeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhh----hccceeeceeecCCcchhhcCCCceEEEE
Confidence            3345 999999999999 8889999988 999999999543333331    47889999998875 49999999999999


Q ss_pred             eCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCC-c-----------EE
Q 013717          168 QLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDK-S-----------LK  235 (437)
Q Consensus       168 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg-~-----------i~  235 (437)
                      ++.-.....                                 -|.-.++++.|.+.-+...+... .           ++
T Consensus        83 ~ia~s~~i~---------------------------------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h  129 (323)
T KOG0322|consen   83 TIAYSAFIS---------------------------------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETH  129 (323)
T ss_pred             EccCcceEE---------------------------------EeeeeccccccccceeccCCCcchhheecCCcccchhh
Confidence            998643221                                 13333444444332222221111 1           12


Q ss_pred             EEECCCcceEEEee----cccccEEEEEEec-CCe---EEEEeCCCeEEEecCCCCccc------ceeeEEeeCccccEE
Q 013717          236 IWRASDLRCLESIK----AHEDAVNAVAVSA-GGT---VYTGSADRKIRVWAKPFNEKR------HALIATLEKHKSAVN  301 (437)
Q Consensus       236 iwd~~~~~~~~~~~----~~~~~v~~~~~~~-~~~---l~~~~~dg~v~iwd~~~~~~~------~~~~~~~~~~~~~i~  301 (437)
                      +-|......+....    ...+.+.|..+.. ++.   +++|..+|.+.+||+......      .+.......|..++.
T Consensus       130 ~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvl  209 (323)
T KOG0322|consen  130 KQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVL  209 (323)
T ss_pred             hhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcce
Confidence            22221111111111    2345677777543 332   788999999999999765321      223334456889999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCccceEE--eeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeee
Q 013717          302 ALALSDDGTVLFSGACDRSILVWDREDSANHMVV--TGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCL  379 (437)
Q Consensus       302 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  379 (437)
                      ++.|.+.-..=++|+.+..+..|++.........  ...+......-..+.++++.+|+++.|++||||+.++..   ++
T Consensus       210 sldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~---pL  286 (323)
T KOG0322|consen  210 SLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN---PL  286 (323)
T ss_pred             eeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC---ch
Confidence            9999987667778888889999998754222222  222222223336677888899999999999999999977   89


Q ss_pred             eeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEee
Q 013717          380 AVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV  420 (437)
Q Consensus       380 ~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~  420 (437)
                      ..+.-|.+.|++++|+|+.+     +++++|.|++|-+|++
T Consensus       287 AVLkyHsagvn~vAfspd~~-----lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  287 AVLKYHSAGVNAVAFSPDCE-----LMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhhhhcceeEEEeCCCCc-----hhhhccCCceEEeeec
Confidence            99999999999999999964     8999999999999986

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.90  E-value=9e-22  Score=173.67  Aligned_cols=210  Identities=16%  Similarity=0.195  Sum_probs=152.4

Q ss_pred             CcEEEEEeCC---CeEEEEECCCcEEEEECCCc-------ceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecC
Q 013717          213 DAVTGLAVNN---GLIYSVSWDKSLKIWRASDL-------RCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAK  280 (437)
Q Consensus       213 ~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~  280 (437)
                      ..|+++.|+|   ..|++++.||.|++|.+..+       .....+..|...|+++.|+|-..  |++++.|-+|++||+
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl  707 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL  707 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence            4578888988   88999999999999998654       34556778999999999999655  999999999999999


Q ss_pred             CCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEe
Q 013717          281 PFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGS  360 (437)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~  360 (437)
                      +...    ....+.+|.+.|..++|+|||+.+++.+.||+|++|+.++.+.....-....+..+.-.-++.++.++++.+
T Consensus       708 ~~~~----~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~G  783 (1012)
T KOG1445|consen  708 ANAK----LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVG  783 (1012)
T ss_pred             hhhh----hhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEec
Confidence            7654    456778999999999999999999999999999999998876544322222333333455666777777766


Q ss_pred             CC----CcEEEeeCCCCCCeeeeeeecCCCCCeeEE-EEEccCCCCceEEEEEecCCCcEEEEeeccCCCCCCCee
Q 013717          361 AD----RTVRIWQRGSDGRFGCLAVLEGHTKPVKSL-TAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSSPLN  431 (437)
Q Consensus       361 ~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l-~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  431 (437)
                      .|    ..|.+||..+-. ...+.+..-...+-.-+ .+.+|.    +.++++|-.|..|.+|++-...|..-|++
T Consensus       784 fdk~SeRQv~~Y~Aq~l~-~~pl~t~~lDvaps~LvP~YD~Ds----~~lfltGKGD~~v~~yEv~~esPy~lpl~  854 (1012)
T KOG1445|consen  784 FDKSSERQVQMYDAQTLD-LRPLYTQVLDVAPSPLVPHYDYDS----NVLFLTGKGDRFVNMYEVIYESPYLLPLA  854 (1012)
T ss_pred             ccccchhhhhhhhhhhcc-CCcceeeeecccCccccccccCCC----ceEEEecCCCceEEEEEecCCCceeeecc
Confidence            65    468888876533 01222221111111111 122333    36899999999999999998887655543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.90  E-value=2e-22  Score=177.79  Aligned_cols=147  Identities=18%  Similarity=0.209  Sum_probs=117.9

Q ss_pred             EeCCCeEEEecCCCCccccee-eEEeeCccccEEEEEEcc-CCCEEEEEeCCCcEEEEECCCCcc---ceEEeeeecccc
Q 013717          269 GSADRKIRVWAKPFNEKRHAL-IATLEKHKSAVNALALSD-DGTVLFSGACDRSILVWDREDSAN---HMVVTGALRGHG  343 (437)
Q Consensus       269 ~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~  343 (437)
                      .+..|.|-||+++...+...- +-.+ .....|+.+.|.| |...|++++.||.|++|.+..+..   .......+.+|.
T Consensus       599 ~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~  677 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHG  677 (1012)
T ss_pred             cCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeeccc
Confidence            445678888887643322111 1111 2456799999999 778999999999999999976532   233445678899


Q ss_pred             cceEEEEeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEee
Q 013717          344 KAILCLINVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV  420 (437)
Q Consensus       344 ~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~  420 (437)
                      ..|+++.|++-   .|++++.|-+|++||+.+.+   ....+.+|.+.|.+++|+|++     +.+++.+.||+|++|+.
T Consensus       678 eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~---~~~~l~gHtdqIf~~AWSpdG-----r~~AtVcKDg~~rVy~P  749 (1012)
T KOG1445|consen  678 EKITSLRFHPLAADVLAVASYDSTIELWDLANAK---LYSRLVGHTDQIFGIAWSPDG-----RRIATVCKDGTLRVYEP  749 (1012)
T ss_pred             ceEEEEEecchhhhHhhhhhccceeeeeehhhhh---hhheeccCcCceeEEEECCCC-----cceeeeecCceEEEeCC
Confidence            99999999975   99999999999999999877   778899999999999999999     47999999999999998


Q ss_pred             ccCC
Q 013717          421 SVSC  424 (437)
Q Consensus       421 ~~~~  424 (437)
                      ...+
T Consensus       750 rs~e  753 (1012)
T KOG1445|consen  750 RSRE  753 (1012)
T ss_pred             CCCC
Confidence            7764

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.8e-22  Score=164.13  Aligned_cols=273  Identities=16%  Similarity=0.286  Sum_probs=190.6

Q ss_pred             CEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC----CeEEEEecCCeEEEEeCCCCcccccccccCc
Q 013717          109 NFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD----GKIFTAHQDCKIRVWQLTPTKHHKLKTTLPT  183 (437)
Q Consensus       109 ~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  183 (437)
                      ..+|++-.+ .|++||..+  .+.+..+   .++...++.+.|.+    +.+++|+.||+|++||++.......+..   
T Consensus        41 ~~vav~lSngsv~lyd~~t--g~~l~~f---k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~---  112 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGT--GQLLEEF---KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISW---  112 (376)
T ss_pred             eeEEEEecCCeEEEEeccc--hhhhhee---cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheec---
Confidence            445666666 999999998  4556666   56777777888863    4499999999999999998765443331   


Q ss_pred             cccceeeecCCCCeeEEeeccceeeecCC-CcEEEEEeCC--CeEEEEE----CCCcEEEEECCCcce-EEEe-eccccc
Q 013717          184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHG-DAVTGLAVNN--GLIYSVS----WDKSLKIWRASDLRC-LESI-KAHEDA  254 (437)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~~l~~~~----~dg~i~iwd~~~~~~-~~~~-~~~~~~  254 (437)
                                               ..+. .+..+++.+-  +.+++|.    .+..|.+||++..+. +..+ ..|.+.
T Consensus       113 -------------------------~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DD  167 (376)
T KOG1188|consen  113 -------------------------TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDD  167 (376)
T ss_pred             -------------------------cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCc
Confidence                                     1233 4666777753  6666664    467899999998766 5554 379999


Q ss_pred             EEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC-CEEEEEeCCCcEEEEECCCCcc
Q 013717          255 VNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG-TVLFSGACDRSILVWDREDSAN  331 (437)
Q Consensus       255 v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~  331 (437)
                      |+++.|+|...  |++|+.||.|.+||+......-.++..+ .+...|.++.|..++ +.|.+-+..++..+|+++.+..
T Consensus       168 VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~  246 (376)
T KOG1188|consen  168 VTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE  246 (376)
T ss_pred             ceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence            99999999876  9999999999999998665444444444 478889999999877 4688888999999999998764


Q ss_pred             ceEEeeeec---------ccccceEEEEeeC-CEEEE-EeCCCcEEEeeCC---CCCCeeeeeeecC-CCCCeeEEEEEc
Q 013717          332 HMVVTGALR---------GHGKAILCLINVA-GLLMS-GSADRTVRIWQRG---SDGRFGCLAVLEG-HTKPVKSLTAVT  396 (437)
Q Consensus       332 ~~~~~~~~~---------~~~~~i~~~~~~~-~~l~~-~~~dg~i~iwd~~---~~~~~~~~~~~~~-h~~~v~~l~~~~  396 (437)
                      ...+.....         .-..-|.+..+.. +..+. |+.-|...++-+.   ++.....+..+.+ |..-|+++.|..
T Consensus       247 ~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~  326 (376)
T KOG1188|consen  247 ETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV  326 (376)
T ss_pred             hhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhc
Confidence            433322200         0011122222222 24444 4435666666443   3333446667777 667788888875


Q ss_pred             cCCCCceEEEEEecCCCcEEEEee
Q 013717          397 EEGQNGVVSVFSGSLDGEIRAWQV  420 (437)
Q Consensus       397 ~~~~~~~~~l~s~~~dg~i~iw~~  420 (437)
                      .+.     +++|||+||.+.+|..
T Consensus       327 ~~~-----~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  327 KND-----VLYTGGEDGLLQAWKV  345 (376)
T ss_pred             ccc-----eeeccCCCceEEEEec
Confidence            553     8999999999999995

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=4.5e-23  Score=193.66  Aligned_cols=265  Identities=16%  Similarity=0.226  Sum_probs=204.2

Q ss_pred             CCCceeEEecCCC---c--ceeeeecCccCCeEEEEee--CC----EEEEEecC-eEEEEeCCCC-ceeeeeccccCCCC
Q 013717           75 SPDETINFSSASH---L--CINSVQLGHKLPIGCIAVH--HN----FLYAASSH-EINVYDRTGT-TWTSINTFNDNDSS  141 (437)
Q Consensus        75 s~dg~i~~~~~~~---~--~~~~~~~~h~~~V~~l~~~--~~----~l~s~~~d-~v~vwd~~~~-~~~~~~~~~~~~~h  141 (437)
                      +.+.++.+|.++-   .  .+.+..+.-....+.|+|.  +.    +||.|.+| .|.+||...- .......+.....|
T Consensus        36 st~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h  115 (1049)
T KOG0307|consen   36 STSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKH  115 (1049)
T ss_pred             ccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhccc
Confidence            4455555555522   1  1344444667788999998  43    48888888 9999998762 12233333344779


Q ss_pred             cccEEEEEEeCC---eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717          142 SGSVKSVTFCDG---KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL  218 (437)
Q Consensus       142 ~~~v~~l~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  218 (437)
                      .+.|..+.|++.   .|++|+.||.|.|||++..+.......                            ....+.|.++
T Consensus       116 ~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~----------------------------~~~~~eI~~l  167 (1049)
T KOG0307|consen  116 TGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGS----------------------------QAPPSEIKCL  167 (1049)
T ss_pred             CCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCC----------------------------CCCcccceEe
Confidence            999999999943   499999999999999987543222211                            1255789999


Q ss_pred             EeCC---CeEEEEECCCcEEEEECCCcceEEEeeccc--ccEEEEEEecCCe--EEEEeCC---CeEEEecCCCCcccce
Q 013717          219 AVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHE--DAVNAVAVSAGGT--VYTGSAD---RKIRVWAKPFNEKRHA  288 (437)
Q Consensus       219 ~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~--l~~~~~d---g~v~iwd~~~~~~~~~  288 (437)
                      +|+.   ..|++++.+|.+.|||++..+.+..+..+.  ..+..++|+|+..  +++++.|   -.|.+||++...   .
T Consensus       168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as---s  244 (1049)
T KOG0307|consen  168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS---S  244 (1049)
T ss_pred             ccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC---C
Confidence            9998   889999999999999999998887776443  3588999999986  7777775   469999998655   4


Q ss_pred             eeEEeeCccccEEEEEEccCC-CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCCCc
Q 013717          289 LIATLEKHKSAVNALALSDDG-TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRT  364 (437)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~  364 (437)
                      .++.+++|...|.++.|++.+ ++|++++.|+.|.+|+.++++    ....+.....++..+.|.+.   .+++++-||.
T Consensus       245 P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE----vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgk  320 (1049)
T KOG0307|consen  245 PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE----VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGK  320 (1049)
T ss_pred             chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce----EeeecCCCCcceeeeeecCCCcchhhhheeccc
Confidence            667778999999999999965 899999999999999999887    55566667788888888865   8999999999


Q ss_pred             EEEeeCCCCC
Q 013717          365 VRIWQRGSDG  374 (437)
Q Consensus       365 i~iwd~~~~~  374 (437)
                      |.||.+....
T Consensus       321 I~I~sl~~~~  330 (1049)
T KOG0307|consen  321 ISIYSLQGTD  330 (1049)
T ss_pred             eeeeeeecCC
Confidence            9999988654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=9.6e-22  Score=163.88  Aligned_cols=291  Identities=11%  Similarity=0.147  Sum_probs=211.1

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeee-ecccc-CCCCcccEEEEEEe-CCe-EEEEecCCeEEEEe
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSI-NTFND-NDSSSGSVKSVTFC-DGK-IFTAHQDCKIRVWQ  168 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~-~~~~~-~~~h~~~v~~l~~~-~~~-l~s~~~dg~i~iwd  168 (437)
                      +|.+.|.++.|+  +++||+|++| .+++|+++.--.... +.+.. ...|...|.|++|. .+. +++|+.+++|.+-|
T Consensus        54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD  133 (609)
T KOG4227|consen   54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD  133 (609)
T ss_pred             hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence            999999999999  9999999999 999999875211111 11111 14577999999998 444 99999999999999


Q ss_pred             CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc-eE
Q 013717          169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR-CL  245 (437)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-~~  245 (437)
                      +++.+.+.....-                            ...+.|+.+..+|  +.+++.+.+|.|.+||.+... .+
T Consensus       134 iEt~qsi~V~~~~----------------------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~  185 (609)
T KOG4227|consen  134 IETKQSIYVANEN----------------------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI  185 (609)
T ss_pred             cccceeeeeeccc----------------------------CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCC
Confidence            9988755443311                            1345899999999  999999999999999998765 22


Q ss_pred             E--EeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeC---ccccEEEEEEccCCCEEEEEeCC
Q 013717          246 E--SIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEK---HKSAVNALALSDDGTVLFSGACD  318 (437)
Q Consensus       246 ~--~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d  318 (437)
                      .  ...........+.|+|...  |++.+..+-+.+||++......-....+.+   ....-..+.|+|+|+.|++--..
T Consensus       186 ~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~  265 (609)
T KOG4227|consen  186 SLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRG  265 (609)
T ss_pred             ceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhcc
Confidence            2  2223456678889999876  888899999999998754322111111222   22334688999999999988777


Q ss_pred             CcEEEEECCCCccceEEeeeec--c--cccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCC------------------
Q 013717          319 RSILVWDREDSANHMVVTGALR--G--HGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGR------------------  375 (437)
Q Consensus       319 g~i~i~d~~~~~~~~~~~~~~~--~--~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~------------------  375 (437)
                      ..-.+||+-+.++. ++.....  +  ....+.++.|-++ .+++|+.+-.|++|.+.....                  
T Consensus       266 ~~P~~~D~~S~R~~-V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~  344 (609)
T KOG4227|consen  266 KCPLYFDFISQRCF-VLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI  344 (609)
T ss_pred             CCCEEeeeecccce-eEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence            77778898765332 2222111  1  1234556667666 789999999999998754220                  


Q ss_pred             --eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEee
Q 013717          376 --FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV  420 (437)
Q Consensus       376 --~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~  420 (437)
                        ...+..+++|..-++.+.|+|...     +|++.|-...+++|.-
T Consensus       345 ~i~~~~~VLrGHRSv~NQVRF~~H~~-----~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  345 FIEKELTVLRGHRSVPNQVRFSQHNN-----LLVSSGVENSFKLWSD  386 (609)
T ss_pred             eecceeEEEecccccccceeecCCcc-----eEeccchhhheecccc
Confidence              134678899999999999999874     7999999999999963

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=1.1e-21  Score=166.58  Aligned_cols=282  Identities=17%  Similarity=0.191  Sum_probs=204.0

Q ss_pred             cccceeeccccc--cccccCCCceeEEecC---CCcceeeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCC
Q 013717           58 SNLSLQTLPSVP--SLQKLSPDETINFSSA---SHLCINSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGT  127 (437)
Q Consensus        58 ~~~~~~~~~~~~--~~~s~s~dg~i~~~~~---~~~~~~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~  127 (437)
                      ...+++|+|..+  .++.+..-|+|-+|++   .+...-+..+ .|..+|.+|.|+   ...+++.+.| +|++-|+++.
T Consensus       188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~  267 (498)
T KOG4328|consen  188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGN  267 (498)
T ss_pred             ceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecch
Confidence            446899999887  6777778899999999   3444555555 999999999999   6778888888 9999999986


Q ss_pred             ceeeeeccccCCCCcccEEEEEEeC-Ce-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccc
Q 013717          128 TWTSINTFNDNDSSSGSVKSVTFCD-GK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKK  205 (437)
Q Consensus       128 ~~~~~~~~~~~~~h~~~v~~l~~~~-~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (437)
                      ..+.+...   ......+..+.|+. +. ++.+..=|.+.+||.+++.......                          
T Consensus       268 i~e~v~s~---~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~--------------------------  318 (498)
T KOG4328|consen  268 ISEEVLSL---DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL--------------------------  318 (498)
T ss_pred             hhHHHhhc---CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh--------------------------
Confidence            55544443   33455677777773 33 8888888899999999875422211                          


Q ss_pred             eeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEE----EeecccccEEEEEEecCCe-EEEEeCCCeEEE
Q 013717          206 KLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLE----SIKAHEDAVNAVAVSAGGT-VYTGSADRKIRV  277 (437)
Q Consensus       206 ~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~i  277 (437)
                         .-|...|..++++|   .++++++.|++.+|||++......    ....|...|.+..|+|.+- |++.+.|..|+|
T Consensus       319 ---~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv  395 (498)
T KOG4328|consen  319 ---RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRV  395 (498)
T ss_pred             ---hhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEE
Confidence               23888999999998   899999999999999998653322    2236999999999999887 999999999999


Q ss_pred             ecCCCCcccceeeEEeeC---cc--ccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee
Q 013717          278 WAKPFNEKRHALIATLEK---HK--SAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV  352 (437)
Q Consensus       278 wd~~~~~~~~~~~~~~~~---~~--~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~  352 (437)
                      ||...-.....+...+..   +.  -......|.|+..++++|-.-..|-|||-..++....+.......-..+..+.+.
T Consensus       396 ~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~  475 (498)
T KOG4328|consen  396 FDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPM  475 (498)
T ss_pred             eecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeeccc
Confidence            987311111122222221   11  1245678999999999999999999999877664444332222222344555555


Q ss_pred             CC-EEEEEeCCCcEEEeeCC
Q 013717          353 AG-LLMSGSADRTVRIWQRG  371 (437)
Q Consensus       353 ~~-~l~~~~~dg~i~iwd~~  371 (437)
                      ++ +++.++..|.|+||--+
T Consensus       476 ~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  476 RDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             ccceeccCCccceEEEEecC
Confidence            66 55555667889988654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=5.6e-20  Score=163.02  Aligned_cols=274  Identities=14%  Similarity=0.132  Sum_probs=182.9

Q ss_pred             cccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEE-EEEecC-eEEEEeCCCCceeeeeccccCCCCccc
Q 013717           70 SLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFL-YAASSH-EINVYDRTGTTWTSINTFNDNDSSSGS  144 (437)
Q Consensus        70 ~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l-~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~  144 (437)
                      .+++.+.|+.+.+|+..... +...+ +| ..+.+++|+  ++.+ ++++.+ .|++||..+++.  ...+   ..+ ..
T Consensus         3 ~~~s~~~d~~v~~~d~~t~~-~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~---~~~-~~   74 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATLE-VTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV--IGTL---PSG-PD   74 (300)
T ss_pred             EEEEecCCCEEEEEECCCCc-eEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE--EEec---cCC-CC
Confidence            46677889999999986543 45555 44 346788998  6666 566667 999999988533  3333   122 23


Q ss_pred             EEEEEEeCCe--E-EEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717          145 VKSVTFCDGK--I-FTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN  221 (437)
Q Consensus       145 v~~l~~~~~~--l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  221 (437)
                      +..++|+++.  + ++++.|+.|++||+.+.+....+.                               +...+.+++++
T Consensus        75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-------------------------------~~~~~~~~~~~  123 (300)
T TIGR03866        75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-------------------------------VGVEPEGMAVS  123 (300)
T ss_pred             ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-------------------------------CCCCcceEEEC
Confidence            5678888664  4 445668999999998764332221                               22345678888


Q ss_pred             C--CeEEEEECCC-cEEEEECCCcceEEEeecccccEEEEEEecCCe-EE-EEeCCCeEEEecCCCCcccceeeEEeeCc
Q 013717          222 N--GLIYSVSWDK-SLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY-TGSADRKIRVWAKPFNEKRHALIATLEKH  296 (437)
Q Consensus       222 ~--~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  296 (437)
                      +  .+++++..++ .+.+||..+++....+. ......+++|+|++. ++ ++..++.|++||+....    .+..+..+
T Consensus       124 ~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~----~~~~~~~~  198 (300)
T TIGR03866       124 PDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK----VIKKITFE  198 (300)
T ss_pred             CCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce----eeeeeeec
Confidence            7  6777777665 56788998887766554 234567899999998 54 44569999999987543    22222211


Q ss_pred             -------cccEEEEEEccCCCEEEEE-eCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEE-eCCCcE
Q 013717          297 -------KSAVNALALSDDGTVLFSG-ACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSG-SADRTV  365 (437)
Q Consensus       297 -------~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~-~~dg~i  365 (437)
                             ......++|+|++++++++ ..++.+.+||+++++.....   .  +...+.++.++  +++|+++ +.+|.|
T Consensus       199 ~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~---~--~~~~~~~~~~~~~g~~l~~~~~~~~~i  273 (300)
T TIGR03866       199 IPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL---L--VGQRVWQLAFTPDEKYLLTTNGVSNDV  273 (300)
T ss_pred             ccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE---E--eCCCcceEEECCCCCEEEEEcCCCCeE
Confidence                   1124568899999986554 45678999999876532211   1  23356666665  4577765 568999


Q ss_pred             EEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717          366 RIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT  396 (437)
Q Consensus       366 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~  396 (437)
                      ++||+.+++   ++..+... ...+.++++|
T Consensus       274 ~v~d~~~~~---~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       274 SVIDVAALK---VIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             EEEECCCCc---EEEEEEcc-cccceeEeCC
Confidence            999999876   66666644 4558887764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.89  E-value=2e-21  Score=166.65  Aligned_cols=269  Identities=15%  Similarity=0.164  Sum_probs=190.1

Q ss_pred             CEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EE--EEecCCeEEEEeCCCCcccccccccCccc
Q 013717          109 NFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IF--TAHQDCKIRVWQLTPTKHHKLKTTLPTVN  185 (437)
Q Consensus       109 ~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~--s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  185 (437)
                      ++.+..+.|.+++||....  .....+..+. ..-.+.+++|.... |+  +.+.|..|++|.-....  ..+..+.   
T Consensus         4 Nl~~aS~gd~~kl~D~s~~--~~~~~~~~~t-~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~--~~Vp~~~---   75 (673)
T KOG4378|consen    4 NLHVASTGDKTKLSDFSDL--ETKSEYVHQT-AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKT--PEVPRVR---   75 (673)
T ss_pred             ceeeeccCCceEEeecccc--cCccccccCC-CCCcceeeeccccceEEEeecCCceeEEEecccCCC--Cccceee---
Confidence            3445555559999999873  2222222111 22348999998554 44  44678889999755331  1110000   


Q ss_pred             cceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecC
Q 013717          186 DRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAG  263 (437)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  263 (437)
                                             ......-.|++...  .++++|+..+.|+|||++...+.+.++.|...|+++.++-.
T Consensus        76 -----------------------k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~  132 (673)
T KOG4378|consen   76 -----------------------KLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNT  132 (673)
T ss_pred             -----------------------ccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCC
Confidence                                   00111222333322  89999999999999999988888888999999999999876


Q ss_pred             Ce-EEEEeCCCeEEEecCCCCcccceeeEEeeCc-cccEEEEEEccCCC-EEEEEeCCCcEEEEECCCCccceEEeeeec
Q 013717          264 GT-VYTGSADRKIRVWAKPFNEKRHALIATLEKH-KSAVNALALSDDGT-VLFSGACDRSILVWDREDSANHMVVTGALR  340 (437)
Q Consensus       264 ~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  340 (437)
                      .. ||+++..|.|.|-.+.++..    ...+... ...+.-+.|+|..+ +|.+++.+|.|.+||+.........   ..
T Consensus       133 DeyiAsvs~gGdiiih~~~t~~~----tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~---~~  205 (673)
T KOG4378|consen  133 DEYIASVSDGGDIIIHGTKTKQK----TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA---SE  205 (673)
T ss_pred             cceeEEeccCCcEEEEecccCcc----ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch---hh
Confidence            66 99999999999997766543    2333333 45567899999766 5667889999999999866543333   45


Q ss_pred             ccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEE
Q 013717          341 GHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRA  417 (437)
Q Consensus       341 ~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  417 (437)
                      .|..+...++|++.   +|++.+.|..|.+||.....   ....+. ...+...++|.+++     .+|+.|...|.|..
T Consensus       206 ~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~---s~~~l~-y~~Plstvaf~~~G-----~~L~aG~s~G~~i~  276 (673)
T KOG4378|consen  206 AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA---STDRLT-YSHPLSTVAFSECG-----TYLCAGNSKGELIA  276 (673)
T ss_pred             hccCCcCcceecCCccceEEEecccceEEEeeccccc---ccceee-ecCCcceeeecCCc-----eEEEeecCCceEEE
Confidence            67777766666543   99999999999999999755   333333 45689999999998     48999999999999


Q ss_pred             EeeccCC
Q 013717          418 WQVSVSC  424 (437)
Q Consensus       418 w~~~~~~  424 (437)
                      ||++..+
T Consensus       277 YD~R~~k  283 (673)
T KOG4378|consen  277 YDMRSTK  283 (673)
T ss_pred             EecccCC
Confidence            9999764

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=3.4e-22  Score=187.79  Aligned_cols=243  Identities=19%  Similarity=0.261  Sum_probs=191.1

Q ss_pred             CcccEEEEEEeC--C---e-EEEEecCCeEEEEeCCCC---cccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717          141 SSGSVKSVTFCD--G---K-IFTAHQDCKIRVWQLTPT---KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH  211 (437)
Q Consensus       141 h~~~v~~l~~~~--~---~-l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (437)
                      -....+.++|.+  +   + |+.|..||.|.+||...-   .....+..                           ...|
T Consensus        63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~---------------------------~~~h  115 (1049)
T KOG0307|consen   63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLAT---------------------------KSKH  115 (1049)
T ss_pred             ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhh---------------------------hccc
Confidence            456788999972  2   2 778889999999998753   22222221                           1359


Q ss_pred             CCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEee--cccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCc
Q 013717          212 GDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIK--AHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNE  284 (437)
Q Consensus       212 ~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~  284 (437)
                      .+.|..+.|++   +.|++|+.||.|.|||+...+.-....  ...+.|.+++|+..-.  |++++.+|.+.|||++.+.
T Consensus       116 ~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~  195 (1049)
T KOG0307|consen  116 TGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK  195 (1049)
T ss_pred             CCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC
Confidence            99999999998   799999999999999998865544442  2467899999997665  8999999999999998653


Q ss_pred             ccceeeEEeeCcc--ccEEEEEEccCCC-EEEEEeCCC---cEEEEECCCCccceEEeeeecccccceEEEEeeCC---E
Q 013717          285 KRHALIATLEKHK--SAVNALALSDDGT-VLFSGACDR---SILVWDREDSANHMVVTGALRGHGKAILCLINVAG---L  355 (437)
Q Consensus       285 ~~~~~~~~~~~~~--~~i~~~~~~~~~~-~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~  355 (437)
                          .+..+..+.  ..+..++|+|++. .|++++.|.   .|.+||++....   ....+.+|...|.+++|.+.   +
T Consensus       196 ----pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass---P~k~~~~H~~GilslsWc~~D~~l  268 (1049)
T KOG0307|consen  196 ----PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS---PLKILEGHQRGILSLSWCPQDPRL  268 (1049)
T ss_pred             ----cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC---chhhhcccccceeeeccCCCCchh
Confidence                233333333  4578999999764 666666543   689999985543   33446789999999999854   9


Q ss_pred             EEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          356 LMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       356 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      |++++.|+.|.+|+.++++   .+..+....+.+..+.|+|..+.    +++.++.||.|-|+.+....
T Consensus       269 llSsgkD~~ii~wN~~tgE---vl~~~p~~~nW~fdv~w~pr~P~----~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  269 LLSSGKDNRIICWNPNTGE---VLGELPAQGNWCFDVQWCPRNPS----VMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             hhcccCCCCeeEecCCCce---EeeecCCCCcceeeeeecCCCcc----hhhhheeccceeeeeeecCC
Confidence            9999999999999999987   78888888899999999999875    79999999999999998765

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.88  E-value=4.4e-20  Score=148.09  Aligned_cols=290  Identities=13%  Similarity=0.131  Sum_probs=202.2

Q ss_pred             eeecCccCCeEEEEee-----CCEEEEEec----C-eEEEEeCC--CCceeeeeccccCCCCcccEEEEEEeCCe-----
Q 013717           92 SVQLGHKLPIGCIAVH-----HNFLYAASS----H-EINVYDRT--GTTWTSINTFNDNDSSSGSVKSVTFCDGK-----  154 (437)
Q Consensus        92 ~~~~~h~~~V~~l~~~-----~~~l~s~~~----d-~v~vwd~~--~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-----  154 (437)
                      +..+...-++.++.|+     +.+||.|+-    . .|.|-.++  +++......+    .|.-+++.+.|.|+.     
T Consensus        38 iy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~f----d~~YP~tK~~wiPd~~g~~p  113 (364)
T KOG0290|consen   38 IYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANF----DHPYPVTKLMWIPDSKGVYP  113 (364)
T ss_pred             EEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCC----CCCCCccceEecCCccccCc
Confidence            3334555678888888     678898882    2 56665554  3333333333    699999999998654     


Q ss_pred             -EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEEC
Q 013717          155 -IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSW  230 (437)
Q Consensus       155 -l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~  230 (437)
                       |++.+ +..+|+|.+...+........-..                     ..-..+..+++++.|+.   +++.+.+-
T Consensus       114 dlLATs-~D~LRlWri~~ee~~~~~~~~L~~---------------------~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen  114 DLLATS-SDFLRLWRIGDEESRVELQSVLNN---------------------NKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             chhhcc-cCeEEEEeccCcCCceehhhhhcc---------------------CcccccCCcccccccccCCcceeEeecc
Confidence             33333 347999999854322111111000                     00124678999999986   99999999


Q ss_pred             CCcEEEEECCCcce---EEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEE
Q 013717          231 DKSLKIWRASDLRC---LESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALAL  305 (437)
Q Consensus       231 dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~  305 (437)
                      |-+..|||++++..   ...+-.|..+|..++|..++.  |++.+.||.||+||++... ....+.+-.....+...++|
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le-HSTIIYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE-HSTIIYEDPSPSTPLLRLSW  250 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc-cceEEecCCCCCCcceeecc
Confidence            99999999998733   455668999999999999776  9999999999999998543 22333333333567889999


Q ss_pred             ccC-CCEEEEEeC-CCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCCC---ee
Q 013717          306 SDD-GTVLFSGAC-DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDGR---FG  377 (437)
Q Consensus       306 ~~~-~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~---~~  377 (437)
                      ++. -+++++-.. ...|.|.|++...   .....+++|.+.|..++|.+.   .|++++.|..+.|||+....+   ..
T Consensus       251 nkqDpnymATf~~dS~~V~iLDiR~P~---tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~d  327 (364)
T KOG0290|consen  251 NKQDPNYMATFAMDSNKVVILDIRVPC---TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGED  327 (364)
T ss_pred             CcCCchHHhhhhcCCceEEEEEecCCC---cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCC
Confidence            984 467776554 4579999998654   355668899999999999865   999999999999999986442   11


Q ss_pred             eeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEE
Q 013717          378 CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRA  417 (437)
Q Consensus       378 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  417 (437)
                      ++..+. -.+.|+.+.|++..+.    .++.+.. .++.+
T Consensus       328 Pilay~-a~~EVNqi~Ws~~~~D----wiai~~~-kklei  361 (364)
T KOG0290|consen  328 PILAYT-AGGEVNQIQWSSSQPD----WIAICFG-KKLEI  361 (364)
T ss_pred             chhhhh-ccceeeeeeecccCCC----EEEEEec-CeeeE
Confidence            222222 4578999999987765    6666654 34444

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=5.9e-20  Score=171.15  Aligned_cols=294  Identities=20%  Similarity=0.295  Sum_probs=198.7

Q ss_pred             eEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe----EEEEecCCeEEEEeCCCC-
Q 013717          101 IGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK----IFTAHQDCKIRVWQLTPT-  172 (437)
Q Consensus       101 V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----l~s~~~dg~i~iwd~~~~-  172 (437)
                      -..+.|+  ...++++.+. .|+|||.+.+  +.+..|.........|+.+.+.++.    +++|+.||.|+||+--.. 
T Consensus      1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~--~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKG--RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred             CceeeecCCCceeEEcCCcceEEEEecccC--ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence            4455666  6778888866 9999999984  4566665445566789999997543    999999999999974322 


Q ss_pred             -cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee
Q 013717          173 -KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK  249 (437)
Q Consensus       173 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~  249 (437)
                       +..+......+..+                    ...+..+.=.-+.|..  ++|++++.-..|+|||.....+...+.
T Consensus      1145 ~~~~eLVTaw~~Ls~--------------------~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP 1204 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSD--------------------QLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP 1204 (1387)
T ss_pred             cCCceeEEeeccccc--------------------cCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecc
Confidence             11111111111000                    0011111112345554  788888888999999999888777775


Q ss_pred             -cccccEEEEEEec-CCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCcccc--EEEEEEccCCC-EEEEEeCCCcEEE
Q 013717          250 -AHEDAVNAVAVSA-GGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSA--VNALALSDDGT-VLFSGACDRSILV  323 (437)
Q Consensus       250 -~~~~~v~~~~~~~-~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~-~l~~~~~dg~i~i  323 (437)
                       +.+.-|+++.-+- .|. +++|..||.|++||.+..... ..+...+.|...  |..+.+-+.|- .|++|+.||.|++
T Consensus      1205 ~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~ 1283 (1387)
T KOG1517|consen 1205 YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQL 1283 (1387)
T ss_pred             cCCCccceeecccccCCceEEEeecCCceEEeecccCCcc-ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEE
Confidence             4455677776543 345 999999999999999865433 456677778877  99999998765 5999999999999


Q ss_pred             EECCCCccceEEeeee-cccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeee----eecCCCCCeeEEEEEc
Q 013717          324 WDREDSANHMVVTGAL-RGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLA----VLEGHTKPVKSLTAVT  396 (437)
Q Consensus       324 ~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~h~~~v~~l~~~~  396 (437)
                      ||++.......+.... ....+..+++..+..  .+|+|+. +.|+||++..... ..+.    .+....+.+.+++|+|
T Consensus      1284 ~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~scL~FHP 1361 (1387)
T KOG1517|consen 1284 LDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-NIIKYNPGFMGQRIGSVSCLAFHP 1361 (1387)
T ss_pred             EecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh-cccccCcccccCcCCCcceeeecc
Confidence            9999842211111111 111224677776654  8898888 9999999986431 1111    1112345789999999


Q ss_pred             cCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          397 EEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       397 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      ..-     ++++|+.|.+|.||..+.+.
T Consensus      1362 ~~~-----llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1362 HRL-----LLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             hhH-----hhhhccCCceEEEeecCCcC
Confidence            873     68999999999999887653

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.2e-21  Score=166.10  Aligned_cols=295  Identities=19%  Similarity=0.262  Sum_probs=220.1

Q ss_pred             eeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC---Ce-EEEEecCCe
Q 013717           92 SVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD---GK-IFTAHQDCK  163 (437)
Q Consensus        92 ~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~-l~s~~~dg~  163 (437)
                      ...| +|.+.|..+.|+  |..|++|++| .|.+||+..+..  ...+  ..+|...|..-.|.|   +. +++++.||.
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~--~l~f--~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq  210 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP--KLSF--ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ  210 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCc--cccc--ccccccchhhhhccCCCCCcCceeccccCc
Confidence            3445 899999999999  9999999999 999999988532  2222  267999998888864   34 999999999


Q ss_pred             EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECC
Q 013717          164 IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRAS  240 (437)
Q Consensus       164 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~  240 (437)
                      +++=.+.........                           +.+..|.++|..++..|   ..|++++.|+.+.-+|++
T Consensus       211 vr~s~i~~t~~~e~t---------------------------~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr  263 (559)
T KOG1334|consen  211 VRVSEILETGYVENT---------------------------KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLR  263 (559)
T ss_pred             eeeeeeccccceecc---------------------------eecccccCccceeeecCCCCCcccccccccceeeeeec
Confidence            999776543322211                           12235999999999877   889999999999999998


Q ss_pred             CcceEEEee---cccc---cEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccc--eeeEEee------CccccEEEEE
Q 013717          241 DLRCLESIK---AHED---AVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRH--ALIATLE------KHKSAVNALA  304 (437)
Q Consensus       241 ~~~~~~~~~---~~~~---~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~------~~~~~i~~~~  304 (437)
                      .......+.   .+..   ....++..|.+.  +++|+.|..+++||.+.-....  ..+..+.      .....|++++
T Consensus       264 ~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~  343 (559)
T KOG1334|consen  264 QDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLV  343 (559)
T ss_pred             cCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEE
Confidence            876544332   3333   578889988775  9999999999999976432210  1112221      2345799999


Q ss_pred             EccCCCEEEEEeCCCcEEEEECCCCcc--c-------eEEeeeeccccc--ceEEEEeeC---CEEEEEeCCCcEEEeeC
Q 013717          305 LSDDGTVLFSGACDRSILVWDREDSAN--H-------MVVTGALRGHGK--AILCLINVA---GLLMSGSADRTVRIWQR  370 (437)
Q Consensus       305 ~~~~~~~l~~~~~dg~i~i~d~~~~~~--~-------~~~~~~~~~~~~--~i~~~~~~~---~~l~~~~~dg~i~iwd~  370 (437)
                      |+.++.-|+++..|-.|+++.-..+..  +       ......+++|..  .|..+-|-|   +|+++|+.-|.|.||+-
T Consensus       344 Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K  423 (559)
T KOG1334|consen  344 YSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK  423 (559)
T ss_pred             ecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEec
Confidence            999888888888899999996443221  0       112222566643  466666665   49999999999999999


Q ss_pred             CCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          371 GSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       371 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      .+++   .+..+.+-..-|+||.-+|..+     +|++.|-|..|+||-..+.+.
T Consensus       424 ~t~e---ii~~MegDr~VVNCLEpHP~~P-----vLAsSGid~DVKIWTP~~~er  470 (559)
T KOG1334|consen  424 KTGE---IIRFMEGDRHVVNCLEPHPHLP-----VLASSGIDHDVKIWTPLTAER  470 (559)
T ss_pred             chhH---HHHHhhcccceEeccCCCCCCc-----hhhccCCccceeeecCCcccc
Confidence            9877   7888888777999999999886     799999999999998755443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=7.5e-20  Score=148.42  Aligned_cols=278  Identities=16%  Similarity=0.180  Sum_probs=198.1

Q ss_pred             ccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeec
Q 013717           59 NLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINT  134 (437)
Q Consensus        59 ~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~  134 (437)
                      ....+|.+-...++.+..||.+.+||..... ..+.+ +|..+|+|++|+  |+.|++++.| .|.+||+..|..  +..
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~--l~r  102 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP--LKR  102 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc--eeE
Confidence            4578999999999999999999999998755 55556 999999999999  9999999999 999999999753  333


Q ss_pred             cccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717          135 FNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH  211 (437)
Q Consensus       135 ~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (437)
                      +    ....+|....|.|..   .++.-.+..-.+-++............+             +.             -
T Consensus       103 i----rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d-------------~d-------------l  152 (405)
T KOG1273|consen  103 I----RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDD-------------GD-------------L  152 (405)
T ss_pred             E----EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCc-------------cc-------------c
Confidence            3    257899999999643   4444444445555555432111111000             00             0


Q ss_pred             CCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeeccc-ccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcc--
Q 013717          212 GDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHE-DAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEK--  285 (437)
Q Consensus       212 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~--  285 (437)
                      .....+..|++  +++++|...|.+.++|..+.+++..++... ..|..+.++..|+ |+.-+.|..|+.|++..-..  
T Consensus       153 n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~  232 (405)
T KOG1273|consen  153 NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEG  232 (405)
T ss_pred             ccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccC
Confidence            00111123444  999999999999999999999999988665 7899999999998 99999999999998752111  


Q ss_pred             ---cceeeEEeeC--ccccEEEEEEccCCCEEEEEeC-CCcEEEEECCCCccceEEeeeecccc-cceEEEEeeCC--EE
Q 013717          286 ---RHALIATLEK--HKSAVNALALSDDGTVLFSGAC-DRSILVWDREDSANHMVVTGALRGHG-KAILCLINVAG--LL  356 (437)
Q Consensus       286 ---~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~--~l  356 (437)
                         ..++.+.++.  ...+-.+++|+.+|.|+++++. -..++||.-..|.    +...+.|.. .....+.|++-  .+
T Consensus       233 r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs----LVKILhG~kgE~l~DV~whp~rp~i  308 (405)
T KOG1273|consen  233 RDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGS----LVKILHGTKGEELLDVNWHPVRPII  308 (405)
T ss_pred             ccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcc----eeeeecCCchhheeecccccceeee
Confidence               1111111111  2234568899999999988764 4579999988776    444445544 45567777776  44


Q ss_pred             EEEeCCCcEEEeeCCCCC
Q 013717          357 MSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       357 ~~~~~dg~i~iwd~~~~~  374 (437)
                      ++- ..|.++||......
T Consensus       309 ~si-~sg~v~iw~~~~~e  325 (405)
T KOG1273|consen  309 ASI-ASGVVYIWAVVQVE  325 (405)
T ss_pred             eec-cCCceEEEEeeccc
Confidence            444 77899999876544

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.87  E-value=3.8e-20  Score=150.64  Aligned_cols=267  Identities=18%  Similarity=0.256  Sum_probs=193.2

Q ss_pred             EEEEee--CCEEEEEecC-eEEEEeCCCCcee----------eeeccccCCCCcccEEEEEEe-------CCe--EEEEe
Q 013717          102 GCIAVH--HNFLYAASSH-EINVYDRTGTTWT----------SINTFNDNDSSSGSVKSVTFC-------DGK--IFTAH  159 (437)
Q Consensus       102 ~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~----------~~~~~~~~~~h~~~v~~l~~~-------~~~--l~s~~  159 (437)
                      ..+.|+  |..|.+-+.| .+++|++......          ....++  ......|...+|.       |+.  +++.+
T Consensus        53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r--~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYR--YQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEE--eccCCEEEEEEeeeccccCCCccceeeecc
Confidence            445677  8889999999 9999998642110          011111  1234677777775       333  88889


Q ss_pred             cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcE---EEEEeCC-CeEEEEECCCcEE
Q 013717          160 QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV---TGLAVNN-GLIYSVSWDKSLK  235 (437)
Q Consensus       160 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~-~~l~~~~~dg~i~  235 (437)
                      .+.-|++||.-+++.........                            |..++   .+++|+| ..-+.++....|+
T Consensus       131 r~~PIh~wdaftG~lraSy~~yd----------------------------h~de~taAhsL~Fs~DGeqlfaGykrcir  182 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAYD----------------------------HQDEYTAAHSLQFSPDGEQLFAGYKRCIR  182 (406)
T ss_pred             ccCceeeeeccccccccchhhhh----------------------------hHHhhhhheeEEecCCCCeEeecccceEE
Confidence            99999999999998776665432                            44433   4789998 4444456678999


Q ss_pred             EEEC-CCcceEEEe-------ecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEE
Q 013717          236 IWRA-SDLRCLESI-------KAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALAL  305 (437)
Q Consensus       236 iwd~-~~~~~~~~~-------~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~  305 (437)
                      +||+ +.|+....+       .+..+-|.+++|+|-..  +++|+....+-||.    .....++..+-+|.+.|+.+.|
T Consensus       183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~----~~~~~pl~llggh~gGvThL~~  258 (406)
T KOG2919|consen  183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYN----DDGRRPLQLLGGHGGGVTHLQW  258 (406)
T ss_pred             EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEe----cCCCCceeeecccCCCeeeEEe
Confidence            9999 555432211       13467899999999665  99999999998884    3344577778899999999999


Q ss_pred             ccCCCEEEEEeC-CCcEEEEECCCCccceEEeeeeccccc----ce-EEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeee
Q 013717          306 SDDGTVLFSGAC-DRSILVWDREDSANHMVVTGALRGHGK----AI-LCLINVAGLLMSGSADRTVRIWQRGSDGRFGCL  379 (437)
Q Consensus       306 ~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~----~i-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  379 (437)
                      .++|+.|++|.. |..|.+||++..+.....   +..|..    .| ..+...+++|++|+.||.|++||++...  ..+
T Consensus       259 ~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~---L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--n~~  333 (406)
T KOG2919|consen  259 CEDGNKLFSGARKDDKILCWDIRYSRDPVYA---LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--NEV  333 (406)
T ss_pred             ccCcCeecccccCCCeEEEEeehhccchhhh---hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC--Ccc
Confidence            999999999876 778999999865443322   233333    22 4455567799999999999999999844  256


Q ss_pred             eeecCCCCCeeEEEEEccCCCCceEEEEEecCC
Q 013717          380 AVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD  412 (437)
Q Consensus       380 ~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d  412 (437)
                      ..+..|...++.++++|..+     ++++++..
T Consensus       334 sv~~~~sd~vNgvslnP~mp-----ilatssGq  361 (406)
T KOG2919|consen  334 SVTGNYSDTVNGVSLNPIMP-----ILATSSGQ  361 (406)
T ss_pred             cccccccccccceecCcccc-----eeeeccCc
Confidence            77788999999999999874     67776643

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.86  E-value=9.4e-20  Score=146.10  Aligned_cols=295  Identities=16%  Similarity=0.194  Sum_probs=202.5

Q ss_pred             CCceeEEecC--CCcceeeeec-CccCCeEEEEee---CCEEEEEecC--------eEEEEeCCCCc-------eeeeec
Q 013717           76 PDETINFSSA--SHLCINSVQL-GHKLPIGCIAVH---HNFLYAASSH--------EINVYDRTGTT-------WTSINT  134 (437)
Q Consensus        76 ~dg~i~~~~~--~~~~~~~~~~-~h~~~V~~l~~~---~~~l~s~~~d--------~v~vwd~~~~~-------~~~~~~  134 (437)
                      .|..|.+...  .........| .|.+.|..++-+   .+.|+++..+        .+.||.+....       ++.+..
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~  117 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS  117 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence            4555555444  3334444555 889999999987   6777776542        47899987631       122222


Q ss_pred             cccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717          135 FNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG  212 (437)
Q Consensus       135 ~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (437)
                      +.  ..+-+.|.|+.|.|+.  +++-. |..|.+|+++....+......+.                        -.++.
T Consensus       118 Ld--teavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~------------------------s~e~~  170 (370)
T KOG1007|consen  118 LD--TEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSE------------------------SAEMR  170 (370)
T ss_pred             CC--HHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccc------------------------ccccc
Confidence            21  1455699999999876  55554 88999999987764311110000                        01255


Q ss_pred             CcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEee-cccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCccc
Q 013717          213 DAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKR  286 (437)
Q Consensus       213 ~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~  286 (437)
                      ...++-+|+|   ...+....|+++..||+++.++...+. .|...|..+.|+|+..  |++|+.||.|++||.+...  
T Consensus       171 ~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--  248 (370)
T KOG1007|consen  171 HSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--  248 (370)
T ss_pred             ceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--
Confidence            6677788888   444555678999999999988877775 7888999999999887  9999999999999987544  


Q ss_pred             ceeeEEeeCccccEEEEEEccC-CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcE
Q 013717          287 HALIATLEKHKSAVNALALSDD-GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTV  365 (437)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i  365 (437)
                       .++..+.+|...+.++.|+|. .++|++|+.|..|.+|...+-.....+.........              -..|..=
T Consensus       249 -~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~--------------e~~dsee  313 (370)
T KOG1007|consen  249 -FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESES--------------EDEDSEE  313 (370)
T ss_pred             -ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccC--------------cchhhHH
Confidence             578888999999999999994 568899999999999987543221111110000000              0001100


Q ss_pred             EEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717          366 RIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       366 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                      |+=-+..    ..+.++..|.+.|.+++|+..++.    ++++-+.||++.|=++..
T Consensus       314 r~kpL~d----g~l~tydehEDSVY~~aWSsadPW----iFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  314 RVKPLQD----GQLETYDEHEDSVYALAWSSADPW----IFASLSYDGRVIISSVPR  362 (370)
T ss_pred             hcccccc----cccccccccccceEEEeeccCCCe----eEEEeccCceEEeecCCh
Confidence            1001121    256788899999999999998886    899999999998866643

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=9.7e-21  Score=154.35  Aligned_cols=255  Identities=18%  Similarity=0.198  Sum_probs=184.7

Q ss_pred             ccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCC
Q 013717           67 SVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSS  141 (437)
Q Consensus        67 ~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h  141 (437)
                      ..+.++.++.-|.|++.+... .++...+ ||...|+.+.+.   .++++++|.| .|++|++++  ..++..+...++|
T Consensus       104 ~~p~la~~G~~GvIrVid~~~-~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~--~~Cv~VfGG~egH  180 (385)
T KOG1034|consen  104 GNPFLAAGGYLGVIRVIDVVS-GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT--DVCVAVFGGVEGH  180 (385)
T ss_pred             CCeeEEeecceeEEEEEecch-hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC--CeEEEEecccccc
Confidence            456788888999999999877 4555555 999999999999   6799999999 999999999  5778888888999


Q ss_pred             cccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCcc-ccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717          142 SGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTV-NDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL  218 (437)
Q Consensus       142 ~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  218 (437)
                      .+.|.++.|+.+.  +++++.|..|++|++...+....+...... +......+.... ..+...  ..-.-|...|-|+
T Consensus       181 rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~-~~fp~f--st~diHrnyVDCv  257 (385)
T KOG1034|consen  181 RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPK-THFPDF--STTDIHRNYVDCV  257 (385)
T ss_pred             cCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccc-cccccc--cccccccchHHHH
Confidence            9999999999544  999999999999999865543332211000 000000000000 000000  0112488999999


Q ss_pred             EeCCCeEEEEECCCcEEEEECC-Ccc-------------eEEEeecccccEEEEEEe--cCCe-EEEEeCCCeEEEecCC
Q 013717          219 AVNNGLIYSVSWDKSLKIWRAS-DLR-------------CLESIKAHEDAVNAVAVS--AGGT-VYTGSADRKIRVWAKP  281 (437)
Q Consensus       219 ~~~~~~l~~~~~dg~i~iwd~~-~~~-------------~~~~~~~~~~~v~~~~~~--~~~~-l~~~~~dg~v~iwd~~  281 (437)
                      .|-.+++++-+-++.|..|..- -.+             .+..+.-....|+-+.|.  |-++ ||.|...|.|.+||++
T Consensus       258 rw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~  337 (385)
T KOG1034|consen  258 RWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLD  337 (385)
T ss_pred             HHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECC
Confidence            9999999999999999999872 111             123333345567777664  4455 9999999999999998


Q ss_pred             CCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECC
Q 013717          282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE  327 (437)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (437)
                      ..................|...+|+.||..|+..+.|++|.-||..
T Consensus       338 ~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  338 NNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             CCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            7665322222233345789999999999999999999999999863

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.4e-19  Score=147.14  Aligned_cols=275  Identities=20%  Similarity=0.217  Sum_probs=190.9

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcc----eeeeecCccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCce-e
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLC----INSVQLGHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTW-T  130 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~----~~~~~~~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~-~  130 (437)
                      ..+.|......+++.+.|+.|++|+.....    .+++.--.-+--+.++|.   ...+++.-.+ .+++|.+...+. .
T Consensus        90 t~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~  169 (420)
T KOG2096|consen   90 TDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGS  169 (420)
T ss_pred             eeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCC
Confidence            478999999999999999999999995432    222222112245777887   5566666666 999998764211 0


Q ss_pred             ------eeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEee
Q 013717          131 ------SINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRR  202 (437)
Q Consensus       131 ------~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (437)
                            ....+...+.|.-.|..+-..++.  +.+++.|.+|.+|++. ++.+..+.+                      
T Consensus       170 ~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt----------------------  226 (420)
T KOG2096|consen  170 GSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT----------------------  226 (420)
T ss_pred             CCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc----------------------
Confidence                  011111113466677777776554  8999999999999998 655444332                      


Q ss_pred             ccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECC---Cc-----ceEEEeecccccEEEEEEecCCe-EEEEeC
Q 013717          203 HKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRAS---DL-----RCLESIKAHEDAVNAVAVSAGGT-VYTGSA  271 (437)
Q Consensus       203 ~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~---~~-----~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~  271 (437)
                              ....-+..+++|  +++++++..--|++|.+-   .|     ..+..+++|...|..++|+++.. +++.+.
T Consensus       227 --------nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk  298 (420)
T KOG2096|consen  227 --------NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK  298 (420)
T ss_pred             --------ccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec
Confidence                    122233456666  899999999999999863   22     34567789999999999999998 999999


Q ss_pred             CCeEEEecCCCCccc---ceeeEE----eeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccccc
Q 013717          272 DRKIRVWAKPFNEKR---HALIAT----LEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGK  344 (437)
Q Consensus       272 dg~v~iwd~~~~~~~---~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  344 (437)
                      ||++++||.+-....   .+.++.    +....+....++++|+|+.|+.+. ...+++|..++++....+   ...|..
T Consensus       299 DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~---e~~h~~  374 (420)
T KOG2096|consen  299 DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPEL---EDIHST  374 (420)
T ss_pred             CCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhH---HHhhcC
Confidence            999999987532211   112222    222334556899999999887764 567999999887643333   356899


Q ss_pred             ceEEEEeeCC--EEEEEeCCCcEEEeeC
Q 013717          345 AILCLINVAG--LLMSGSADRTVRIWQR  370 (437)
Q Consensus       345 ~i~~~~~~~~--~l~~~~~dg~i~iwd~  370 (437)
                      .|.+++|+.+  ++++++ |..++++.-
T Consensus       375 ~Is~is~~~~g~~~atcG-dr~vrv~~n  401 (420)
T KOG2096|consen  375 TISSISYSSDGKYIATCG-DRYVRVIRN  401 (420)
T ss_pred             ceeeEEecCCCcEEeeec-ceeeeeecC
Confidence            9999998865  777665 667888763

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=2.8e-20  Score=161.68  Aligned_cols=211  Identities=16%  Similarity=0.300  Sum_probs=150.2

Q ss_pred             eec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC---Ce-EEEEecCCeE
Q 013717           93 VQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD---GK-IFTAHQDCKI  164 (437)
Q Consensus        93 ~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~-l~s~~~dg~i  164 (437)
                      ..+ ||++.|.||+|+  |.+|++|++| .+.|||.-.  .+.+..+.  .+|...|.++.|-|   +. +++|+.|..|
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~--~KllhsI~--TgHtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE--YKLLHSIS--TGHTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchh--cceeeeee--cccccceeEEeeeccCCCeEEEeccCcceE
Confidence            445 999999999999  9999999999 999999986  34444433  58999999999985   33 9999999999


Q ss_pred             EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCC
Q 013717          165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASD  241 (437)
Q Consensus       165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~  241 (437)
                      +++|+...+....-...                    ......+..|...|..++..|   +.+.++++||+|+-+|++.
T Consensus       120 ~lfdl~~~~~~~~d~~~--------------------~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE  179 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGM--------------------EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE  179 (758)
T ss_pred             EEEecccccccccccCc--------------------cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence            99999853321110000                    011233456888898888866   8899999999999999986


Q ss_pred             cce-------E---EEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCccc--------------ceeeEEee-
Q 013717          242 LRC-------L---ESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKR--------------HALIATLE-  294 (437)
Q Consensus       242 ~~~-------~---~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~--------------~~~~~~~~-  294 (437)
                      ...       .   ..+...--...|+.++|...  |++|+.|-..++||.+.....              ..++..+. 
T Consensus       180 ph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p  259 (758)
T KOG1310|consen  180 PHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSP  259 (758)
T ss_pred             CccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecC
Confidence            311       1   11112234578899999776  999999999999995421110              01122211 


Q ss_pred             Cc-----------cccEEEEEEccCCCEEEEEeCCCcEEEEECC
Q 013717          295 KH-----------KSAVNALALSDDGTVLFSGACDRSILVWDRE  327 (437)
Q Consensus       295 ~~-----------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (437)
                      +|           ...++-+.|+|+|..|++.-....|+++|+.
T Consensus       260 ~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn  303 (758)
T KOG1310|consen  260 GHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVN  303 (758)
T ss_pred             ccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeec
Confidence            11           1225778899999988877777789999986

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.1e-18  Score=136.56  Aligned_cols=280  Identities=15%  Similarity=0.206  Sum_probs=190.0

Q ss_pred             eEEEEee--CCEEEEEecC-eEEEEeCCCC---c--eeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCC
Q 013717          101 IGCIAVH--HNFLYAASSH-EINVYDRTGT---T--WTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPT  172 (437)
Q Consensus       101 V~~l~~~--~~~l~s~~~d-~v~vwd~~~~---~--~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~  172 (437)
                      |.+-+++  +++|+.|..+ .|.+..+++-   .  ..-...+....+|.++|..++|.++.|++|+. |.|+-|..+..
T Consensus        13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~   91 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEE   91 (325)
T ss_pred             HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhh
Confidence            3444555  8999999998 9999998751   0  01111122236899999999999888888875 99999988754


Q ss_pred             cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeec
Q 013717          173 KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKA  250 (437)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~  250 (437)
                      ....-.+.+       .....|.          +.=.-.-..|+++...|  +-++.++.|+.++-||+++|+...++++
T Consensus        92 ~es~~~K~l-------we~~~P~----------~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG  154 (325)
T KOG0649|consen   92 EESLATKRL-------WEVKIPM----------QVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRG  154 (325)
T ss_pred             hhhccchhh-------hhhcCcc----------ccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcC
Confidence            331111100       0000000          00001334788999987  7777778999999999999999999999


Q ss_pred             ccccEEEEEE-ecCCeEEEEeCCCeEEEecCCCCcccceeeEEee---------Cc-cccEEEEEEccCCCEEEEEeCCC
Q 013717          251 HEDAVNAVAV-SAGGTVYTGSADRKIRVWAKPFNEKRHALIATLE---------KH-KSAVNALALSDDGTVLFSGACDR  319 (437)
Q Consensus       251 ~~~~v~~~~~-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---------~~-~~~i~~~~~~~~~~~l~~~~~dg  319 (437)
                      |.+.|.++.- +..+.+++|+.||++++||.++.+.    +..+.         .| ...|.+++.+  ..++++|+ ..
T Consensus       155 HtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~----v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp  227 (325)
T KOG0649|consen  155 HTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH----VSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GP  227 (325)
T ss_pred             CcceeeeeeecccCcceeecCCCccEEEEeccccce----eEEeccccChhhcCcccCceeEEEecc--CceEEecC-CC
Confidence            9999999998 5566699999999999999876542    22222         12 2346677765  44888876 45


Q ss_pred             cEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCC
Q 013717          320 SILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEG  399 (437)
Q Consensus       320 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  399 (437)
                      .+.+|.++..+....+.  +   ...+..+.|..+.+++++..+.|.-|.+..    ..-..........+...|...--
T Consensus       228 ~lslwhLrsse~t~vfp--i---pa~v~~v~F~~d~vl~~G~g~~v~~~~l~G----vl~a~ip~~s~~c~s~s~~~~p~  298 (325)
T KOG0649|consen  228 KLSLWHLRSSESTCVFP--I---PARVHLVDFVDDCVLIGGEGNHVQSYTLNG----VLQANIPVESTACYSASWQTSPI  298 (325)
T ss_pred             ceeEEeccCCCceEEEe--c---ccceeEeeeecceEEEeccccceeeeeecc----EEEEeccCCccceeeecccCCce
Confidence            69999999877654443  2   345677888999999999999999998875    12233333333444444443222


Q ss_pred             CCceEEEEEecCCCcEEEE
Q 013717          400 QNGVVSVFSGSLDGEIRAW  418 (437)
Q Consensus       400 ~~~~~~l~s~~~dg~i~iw  418 (437)
                          ++|-.++....+.++
T Consensus       299 ----k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  299 ----KFISIAGFSNKLHIL  313 (325)
T ss_pred             ----EEEEecccceeeeee
Confidence                367777777777775

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.86  E-value=2.8e-19  Score=149.37  Aligned_cols=233  Identities=17%  Similarity=0.320  Sum_probs=171.9

Q ss_pred             cccCCCCcccEEEEEEeC--Ce-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717          135 FNDNDSSSGSVKSVTFCD--GK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH  211 (437)
Q Consensus       135 ~~~~~~h~~~v~~l~~~~--~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (437)
                      .....+|+++|..++|+|  +. +++|+.|.+|.||++..+.....+.                       .....+.+|
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt-----------------------epvv~L~gH  130 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT-----------------------EPVVELYGH  130 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc-----------------------cceEEEeec
Confidence            334478999999999994  34 9999999999999998765433322                       234556789


Q ss_pred             CCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc
Q 013717          212 GDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH  287 (437)
Q Consensus       212 ~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~  287 (437)
                      ...|--+.|+|   +.|++++.|.+|.+||+.+++.+.++. |.+.|+++.|+.||. +++.+.|..|+|||.+.+.   
T Consensus       131 ~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~---  206 (472)
T KOG0303|consen  131 QRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT---  206 (472)
T ss_pred             ceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc---
Confidence            99999999999   999999999999999999999998887 999999999999999 9999999999999887654   


Q ss_pred             eeeEEeeCccc-cEEEEEEccCCCEEEEEe---CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEe
Q 013717          288 ALIATLEKHKS-AVNALALSDDGTVLFSGA---CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGS  360 (437)
Q Consensus       288 ~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~  360 (437)
                       .+..-.+|.+ ....+.|-.+|..+-+|-   .+..+-+||....+....+ ..+.. +..|+--.++++   ..++|-
T Consensus       207 -~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~-~elDt-SnGvl~PFyD~dt~ivYl~GK  283 (472)
T KOG0303|consen  207 -VVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIAL-QELDT-SNGVLLPFYDPDTSIVYLCGK  283 (472)
T ss_pred             -EeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCccee-EEecc-CCceEEeeecCCCCEEEEEec
Confidence             5555455654 455677888888555543   3778999998876555333 23333 334444445544   566788


Q ss_pred             CCCcEEEeeCCCCCCee-eeeeecCCCCCeeEEEEEccC
Q 013717          361 ADRTVRIWQRGSDGRFG-CLAVLEGHTKPVKSLTAVTEE  398 (437)
Q Consensus       361 ~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~~l~~~~~~  398 (437)
                      .|+.||.|.+.....+. .+.++. ...+-..+.|.|..
T Consensus       284 GD~~IRYyEit~d~P~~hyln~f~-S~epQRG~g~mPKR  321 (472)
T KOG0303|consen  284 GDSSIRYFEITNEPPFVHYLNTFS-SKEPQRGMGFMPKR  321 (472)
T ss_pred             CCcceEEEEecCCCceeEEecccc-cCCccccccccccc
Confidence            89999999998765321 122222 23455566666643

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.85  E-value=3e-19  Score=149.73  Aligned_cols=305  Identities=16%  Similarity=0.182  Sum_probs=204.8

Q ss_pred             CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCce----eeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEE
Q 013717           96 GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTW----TSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIR  165 (437)
Q Consensus        96 ~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~----~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~  165 (437)
                      ....+|.++.|.   .+.|+||+.| .|++|.++....    ..+.-+..+..|...|+++.|++++  |++|+.+|.|.
T Consensus        11 H~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~   90 (434)
T KOG1009|consen   11 HDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF   90 (434)
T ss_pred             cCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence            345789999998   4589999999 999999875321    2333344447899999999999875  99999999999


Q ss_pred             EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc
Q 013717          166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR  243 (437)
Q Consensus       166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~  243 (437)
                      +|........ ....        ..-...+     .....+.+.+|...|..++|.+  .++++++-|..+++||+..|+
T Consensus        91 lWk~~~~~~~-~~d~--------e~~~~ke-----~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~  156 (434)
T KOG1009|consen   91 LWKQGDVRIF-DADT--------EADLNKE-----KWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ  156 (434)
T ss_pred             EEEecCcCCc-cccc--------hhhhCcc-----ceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce
Confidence            9987641110 0000        0000000     0112345567999999999998  899999999999999999999


Q ss_pred             eEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCccc-----------------ceeeEEeeC--ccccEEEE
Q 013717          244 CLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKR-----------------HALIATLEK--HKSAVNAL  303 (437)
Q Consensus       244 ~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~-----------------~~~~~~~~~--~~~~i~~~  303 (437)
                      ....+..|...+..++|.|-++ +++-+.|...+.+.+......                 ....+.+..  ...-...+
T Consensus       157 l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl  236 (434)
T KOG1009|consen  157 LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL  236 (434)
T ss_pred             eEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence            9999999999999999999988 888888887777755422211                 111111111  11224578


Q ss_pred             EEccCCCEEEEEeC----CC-----cEEEEECCCCccceEEeeeecccccceEEEEee--------------------CC
Q 013717          304 ALSDDGTVLFSGAC----DR-----SILVWDREDSANHMVVTGALRGHGKAILCLINV--------------------AG  354 (437)
Q Consensus       304 ~~~~~~~~l~~~~~----dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------------~~  354 (437)
                      +|+|||.+|++...    .+     ..++|+-...+++.   ..+.........+.+.                    ..
T Consensus       237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~---~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrl  313 (434)
T KOG1009|consen  237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPA---ARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRL  313 (434)
T ss_pred             ccCCCCcEEEcccceeeeCCceeeceeEeeccccccCce---eecCCCCcceEEEEeeeeEEEeccccccccccccccce
Confidence            89999999987643    22     33555544322221   1122222222222221                    11


Q ss_pred             EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          355 LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       355 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      .+|.++. ..|+|||..+..++.+  .-.-|-..|++++|++++.     +|+..|.||..-+-.++..+.
T Consensus       314 vfaiAt~-~svyvydtq~~~P~~~--v~nihy~~iTDiaws~dg~-----~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  314 VFAIATK-NSVYVYDTQTLEPLAV--VDNIHYSAITDIAWSDDGS-----VLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             EEEEeec-ceEEEeccccccceEE--EeeeeeeeecceeecCCCc-----EEEEeccCCceEEEEEcchhc
Confidence            4455554 4699999998663332  2344888999999999986     788899999988877776554

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=8.1e-20  Score=160.31  Aligned_cols=274  Identities=19%  Similarity=0.191  Sum_probs=202.9

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee----CCEEEEEecCeEEEEeCCCCce------
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH----HNFLYAASSHEINVYDRTGTTW------  129 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~----~~~l~s~~~d~v~vwd~~~~~~------  129 (437)
                      -+++..|+...+++++.||++++|.+.. ..|+.+....+.|.|++|+    -..||++-.+.+.|-+..-|..      
T Consensus       404 r~iSvdp~G~wlasGsdDGtvriWEi~T-gRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t  482 (733)
T KOG0650|consen  404 RSISVDPSGEWLASGSDDGTVRIWEIAT-GRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPT  482 (733)
T ss_pred             EEEEecCCcceeeecCCCCcEEEEEeec-ceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcch
Confidence            3778899999999999999999999977 5666666666789999998    2344444333444444322100      


Q ss_pred             -e-------------------------eeeccccCCCCcccEEEEEEeC--CeEEEEec---CCeEEEEeCCCCcccccc
Q 013717          130 -T-------------------------SINTFNDNDSSSGSVKSVTFCD--GKIFTAHQ---DCKIRVWQLTPTKHHKLK  178 (437)
Q Consensus       130 -~-------------------------~~~~~~~~~~h~~~v~~l~~~~--~~l~s~~~---dg~i~iwd~~~~~~~~~~  178 (437)
                       .                         ....+...-.|...|..|.|+.  +.|++...   ...|.|.++........+
T Consensus       483 ~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF  562 (733)
T KOG0650|consen  483 KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPF  562 (733)
T ss_pred             hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCch
Confidence             0                         0000000123778889999984  44666654   356888888765433222


Q ss_pred             cccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEE
Q 013717          179 TTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVN  256 (437)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  256 (437)
                                                    ....+.|.++.|+|  .+|++++. ..|+|||+...+.+..+......|.
T Consensus       563 ------------------------------~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS  611 (733)
T KOG0650|consen  563 ------------------------------RKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWIS  611 (733)
T ss_pred             ------------------------------hhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeee
Confidence                                          23567899999999  66666554 6899999998888887777778899


Q ss_pred             EEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCC-----Cc
Q 013717          257 AVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRED-----SA  330 (437)
Q Consensus       257 ~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~  330 (437)
                      .++++|.|. |+.|+.|+.+..||+..+.   ++.+++..|...+++++|++.-.+|++|+.||++.||--.-     ..
T Consensus       612 ~msihp~GDnli~gs~d~k~~WfDldlss---kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qn  688 (733)
T KOG0650|consen  612 SMSIHPNGDNLILGSYDKKMCWFDLDLSS---KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQN  688 (733)
T ss_pred             eeeecCCCCeEEEecCCCeeEEEEcccCc---chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcC
Confidence            999999998 9999999999999997665   45667778999999999999999999999999999985321     11


Q ss_pred             cceEEeeeecccccc----eEEEEeeCC--EEEEEeCCCcEEEe
Q 013717          331 NHMVVTGALRGHGKA----ILCLINVAG--LLMSGSADRTVRIW  368 (437)
Q Consensus       331 ~~~~~~~~~~~~~~~----i~~~~~~~~--~l~~~~~dg~i~iw  368 (437)
                      ...+....+.+|...    |+...|++.  +|++++.||+|++|
T Consensus       689 pliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  689 PLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             CceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            334556677888766    888888887  99999999999998

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.85  E-value=9.8e-20  Score=152.03  Aligned_cols=211  Identities=18%  Similarity=0.263  Sum_probs=159.5

Q ss_pred             eeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCc-------ceEEEeecccccEEEEEEecCCe--EEEEeCCCe
Q 013717          207 LWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDL-------RCLESIKAHEDAVNAVAVSAGGT--VYTGSADRK  274 (437)
Q Consensus       207 ~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~  274 (437)
                      .+.+|.++|..++|+|   ..|++|+.|.+|.||.+..+       +.+..+.+|...|--++|+|.-.  |++++.|..
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            3468999999999999   89999999999999998754       45677889999999999999776  999999999


Q ss_pred             EEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccc---eEEEEe
Q 013717          275 IRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKA---ILCLIN  351 (437)
Q Consensus       275 v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---i~~~~~  351 (437)
                      |.+||+.++.    .+..+. |...|.++.|+.||.+|++.+.|..|+|||.++++....    -.+|.+.   -.-+--
T Consensus       156 v~iWnv~tge----ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e----~~~heG~k~~Raifl~  226 (472)
T KOG0303|consen  156 VSIWNVGTGE----ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE----GVAHEGAKPARAIFLA  226 (472)
T ss_pred             EEEEeccCCc----eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeee----cccccCCCcceeEEec
Confidence            9999887665    444555 999999999999999999999999999999998874332    2344332   122223


Q ss_pred             eCCEEEEEe---CCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCCC
Q 013717          352 VAGLLMSGS---ADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSS  428 (437)
Q Consensus       352 ~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~  428 (437)
                      ++.++-||-   .+.++-+||-..-+....+.++... +.|.-=-+.++.+    .+.++|-.|+.||.|+++...|.-.
T Consensus       227 ~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~dt~----ivYl~GKGD~~IRYyEit~d~P~~h  301 (472)
T KOG0303|consen  227 SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPDTS----IVYLCGKGDSSIRYFEITNEPPFVH  301 (472)
T ss_pred             cCceeeeccccccccceeccCcccccCcceeEEeccC-CceEEeeecCCCC----EEEEEecCCcceEEEEecCCCceeE
Confidence            444444442   3678999998876655455566543 3443333455544    3566777899999999999887555


Q ss_pred             Cee
Q 013717          429 PLN  431 (437)
Q Consensus       429 ~~~  431 (437)
                      .++
T Consensus       302 yln  304 (472)
T KOG0303|consen  302 YLN  304 (472)
T ss_pred             Eec
Confidence            444

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.85  E-value=3.7e-19  Score=144.93  Aligned_cols=270  Identities=18%  Similarity=0.223  Sum_probs=195.0

Q ss_pred             ceeeccccccccccCCCceeEEecCCCcc-----------eeeeec--CccCCeEEEEee---------CCEEEEEecC-
Q 013717           61 SLQTLPSVPSLQKLSPDETINFSSASHLC-----------INSVQL--GHKLPIGCIAVH---------HNFLYAASSH-  117 (437)
Q Consensus        61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~-----------~~~~~~--~h~~~V~~l~~~---------~~~l~s~~~d-  117 (437)
                      ...-+|...-+++.+.|..+++|++....           .....+  .....|...+|-         ..++++.+.+ 
T Consensus        54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~  133 (406)
T KOG2919|consen   54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ  133 (406)
T ss_pred             cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence            45678889999999999999999982211           111111  233456666553         4788888888 


Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcc---cEEEEEEeCCe-EEEEecCCeEEEEeC-CCCcccccccccCccccceeeec
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSG---SVKSVTFCDGK-IFTAHQDCKIRVWQL-TPTKHHKLKTTLPTVNDRLLRFM  192 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~-l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~  192 (437)
                      -|++||.-+|+.+.....   ..|..   .-.+++|++++ -+.++....|+++|+ +.+..-.....+...        
T Consensus       134 PIh~wdaftG~lraSy~~---ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~--------  202 (406)
T KOG2919|consen  134 PIHLWDAFTGKLRASYRA---YDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKG--------  202 (406)
T ss_pred             ceeeeeccccccccchhh---hhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcc--------
Confidence            999999999766554443   23444   45689999887 666777889999999 444432222221100        


Q ss_pred             CCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEE
Q 013717          193 LPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYT  268 (437)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~  268 (437)
                                     -.+..+-|.+++++|   ..++.|+....+-||.-..+.++..+-+|.+.|+.+.|.++|. |++
T Consensus       203 ---------------k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfs  267 (406)
T KOG2919|consen  203 ---------------KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFS  267 (406)
T ss_pred             ---------------cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecc
Confidence                           023567789999999   6899999999999999989999999999999999999999998 888


Q ss_pred             EeC-CCeEEEecCCCCcccceeeEEeeCccc---cEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccccc
Q 013717          269 GSA-DRKIRVWAKPFNEKRHALIATLEKHKS---AVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGK  344 (437)
Q Consensus       269 ~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  344 (437)
                      |.. |..|..||++...   .++..+..|..   .-.-....|+|++|++|+.||.|++||+++...   ....+..+..
T Consensus       268 GaRk~dkIl~WDiR~~~---~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn---~~sv~~~~sd  341 (406)
T KOG2919|consen  268 GARKDDKILCWDIRYSR---DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN---EVSVTGNYSD  341 (406)
T ss_pred             cccCCCeEEEEeehhcc---chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC---cccccccccc
Confidence            775 7899999998654   23444444433   222345568999999999999999999987433   2233456788


Q ss_pred             ceEEEEeeCC--EEEEEeCC
Q 013717          345 AILCLINVAG--LLMSGSAD  362 (437)
Q Consensus       345 ~i~~~~~~~~--~l~~~~~d  362 (437)
                      .+..++.++-  ++++++..
T Consensus       342 ~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  342 TVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             cccceecCcccceeeeccCc
Confidence            8999998887  55655543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.84  E-value=3e-19  Score=143.27  Aligned_cols=207  Identities=21%  Similarity=0.300  Sum_probs=159.1

Q ss_pred             eeecCCCcEEEEEeCC---CeEEEEECC-------CcEEEEECCCc---------ceEEEee-cccccEEEEEEecCCe-
Q 013717          207 LWIEHGDAVTGLAVNN---GLIYSVSWD-------KSLKIWRASDL---------RCLESIK-AHEDAVNAVAVSAGGT-  265 (437)
Q Consensus       207 ~~~~~~~~v~~~~~~~---~~l~~~~~d-------g~i~iwd~~~~---------~~~~~~~-~~~~~v~~~~~~~~~~-  265 (437)
                      .|..|.++|..++-+|   +.|+++..+       -.+.||.+...         +++..+. .+-+.|.|+.|.|++. 
T Consensus        58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k  137 (370)
T KOG1007|consen   58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK  137 (370)
T ss_pred             hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence            3456889999999988   677777653       24679988643         3333443 4556899999999988 


Q ss_pred             EEEEeCCCeEEEecCCCCcccceeeE-Ee-eCccccEEEEEEcc--CCCEEEEEeCCCcEEEEECCCCccceEEeeeecc
Q 013717          266 VYTGSADRKIRVWAKPFNEKRHALIA-TL-EKHKSAVNALALSD--DGTVLFSGACDRSILVWDREDSANHMVVTGALRG  341 (437)
Q Consensus       266 l~~~~~dg~v~iwd~~~~~~~~~~~~-~~-~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  341 (437)
                      +++-. |..|.+|++.........+. .. ..+....++-+|+|  ||+.+++. .|+++..||+++..+...+   ..+
T Consensus       138 lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI---~dA  212 (370)
T KOG1007|consen  138 LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSI---EDA  212 (370)
T ss_pred             eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcch---hhh
Confidence            55544 89999999876553211111 11 12456678889999  78787776 5899999999976654433   457


Q ss_pred             cccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEE
Q 013717          342 HGKAILCLINVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAW  418 (437)
Q Consensus       342 ~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  418 (437)
                      |...+..+.++++   +|++++.||.|+|||.+..+  .++..+.+|...|.++.|.|..++    ++++||.|..|.+|
T Consensus       213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--~pv~el~~HsHWvW~VRfn~~hdq----LiLs~~SDs~V~Ls  286 (370)
T KOG1007|consen  213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--FPVQELPGHSHWVWAVRFNPEHDQ----LILSGGSDSAVNLS  286 (370)
T ss_pred             hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--ccccccCCCceEEEEEEecCccce----EEEecCCCceeEEE
Confidence            8889999999988   89999999999999999866  689999999999999999998875    99999999999999


Q ss_pred             eeccCC
Q 013717          419 QVSVSC  424 (437)
Q Consensus       419 ~~~~~~  424 (437)
                      ....-.
T Consensus       287 ca~svS  292 (370)
T KOG1007|consen  287 CASSVS  292 (370)
T ss_pred             eccccc
Confidence            866543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=1.5e-16  Score=148.49  Aligned_cols=315  Identities=32%  Similarity=0.471  Sum_probs=231.0

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeeeec-Ccc-CCeEEEEe-e--CC-EEEEEec-C-eEEEEeCCC-Ccee
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHK-LPIGCIAV-H--HN-FLYAASS-H-EINVYDRTG-TTWT  130 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~-~~V~~l~~-~--~~-~l~s~~~-d-~v~vwd~~~-~~~~  130 (437)
                      ..+.+.+....+...+.|+.+.+|+..........+ ++. ..+..+.+ .  +. +++..+. + .+.+|+... ... 
T Consensus        69 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-  147 (466)
T COG2319          69 TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKL-  147 (466)
T ss_pred             EEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeE-
Confidence            566788888888888999999999998776455555 533 47777777 4  44 5555444 7 999999986 222 


Q ss_pred             eeeccccCCCCcccEEEEEEeCCe--EEEEec-CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeecccee
Q 013717          131 SINTFNDNDSSSGSVKSVTFCDGK--IFTAHQ-DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKL  207 (437)
Q Consensus       131 ~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (437)
                       ...+   ..|...|..+.|+++.  +++++. |+.+++|++.........                             
T Consensus       148 -~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------  194 (466)
T COG2319         148 -IRTL---EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL-----------------------------  194 (466)
T ss_pred             -EEEE---ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEee-----------------------------
Confidence             2222   4699999999999776  666764 999999999874332222                             


Q ss_pred             eecCCCcEEEEEeCC--C-eEEEEECCCcEEEEECCCcceEE-EeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCC
Q 013717          208 WIEHGDAVTGLAVNN--G-LIYSVSWDKSLKIWRASDLRCLE-SIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPF  282 (437)
Q Consensus       208 ~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~  282 (437)
                       .+|...|.++++.+  . .+++++.|+.|++||...+..+. .+..|.... ...|++++. +++++.|+.+++|++..
T Consensus       195 -~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~  272 (466)
T COG2319         195 -AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRS  272 (466)
T ss_pred             -ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecC
Confidence             34889999999998  3 45555899999999998888877 577777765 448999986 88999999999999875


Q ss_pred             CcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC--CEEEEE-
Q 013717          283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLLMSG-  359 (437)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~-  359 (437)
                      ...   ....+..|...+.++.|.|++..+++++.|+.+.+||...........  ...|...+..+.+.+  ..++.+ 
T Consensus       273 ~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  347 (466)
T COG2319         273 SSS---LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT--LKGHEGPVSSLSFSPDGSLLVSGG  347 (466)
T ss_pred             CCc---EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee--ecccCCceEEEEECCCCCEEEEee
Confidence            543   223336678999999999988888889999999999887665333322  235666677776632  355555 


Q ss_pred             eCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEE-ecCCCcEEEEeeccCCC
Q 013717          360 SADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFS-GSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       360 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s-~~~dg~i~iw~~~~~~~  425 (437)
                      ..|+.+++|++....   .......+. .+..+.+.+ . .    .++. +..++.+.+|+......
T Consensus       348 ~~d~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~-~-~----~~~~~~~~~~~~~~~~~~~~~~  404 (466)
T COG2319         348 SDDGTIRLWDLRTGK---PLKTLEGHS-NVLSVSFSP-D-G----RVVSSGSTDGTVRLWDLSTGSL  404 (466)
T ss_pred             cCCCcEEeeecCCCc---eeEEecCCc-eEEEEEECC-C-C----CEEEEecCCCceEEEecccCee
Confidence            688999999998755   223333222 288888888 6 4    3444 89999999999987754

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.83  E-value=3.1e-19  Score=141.36  Aligned_cols=283  Identities=13%  Similarity=0.119  Sum_probs=196.9

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeeccc
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTFN  136 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~  136 (437)
                      .++.|..+.. +.++...|.+.+|.++........- .|...|+.+..- ++.|.+-+.| .+.+|++.......+    
T Consensus        18 ~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i----   92 (323)
T KOG0322|consen   18 TSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISI----   92 (323)
T ss_pred             eehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceEEE----
Confidence            4556666665 7778999999999998877666655 788899999887 7999999999 999999987433222    


Q ss_pred             cCCCCcccEEEEEEeCCeEEEEecCC-eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcE
Q 013717          137 DNDSSSGSVKSVTFCDGKIFTAHQDC-KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV  215 (437)
Q Consensus       137 ~~~~h~~~v~~l~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  215 (437)
                          |.-.++++.|.+-.+...+... ..-.++-+....   .............+..+            .-.+..+.+
T Consensus        93 ----~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde---~h~~D~g~~tqv~i~dd------------~~~~Klgsv  153 (323)
T KOG0322|consen   93 ----HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE---THKQDGGDTTQVQIADD------------SERSKLGSV  153 (323)
T ss_pred             ----eeeeccccccccceeccCCCcchhheecCCcccch---hhhhccCccceeEccCc------------hhccccCce
Confidence                5556677777655454444332 122222211111   00000000000000000            002355667


Q ss_pred             EEEEeCC-----CeEEEEECCCcEEEEECCCcceE----------EEeecccccEEEEEEecCCe-EEEEeCCCeEEEec
Q 013717          216 TGLAVNN-----GLIYSVSWDKSLKIWRASDLRCL----------ESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWA  279 (437)
Q Consensus       216 ~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd  279 (437)
                      .+..+..     -++++|.++|.+.+||+.++..+          .....|.++|.++.+.+.-. =++|+.+..+..|.
T Consensus       154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~S  233 (323)
T KOG0322|consen  154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYS  233 (323)
T ss_pred             eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeee
Confidence            7776432     56788899999999999987433          33346889999999986544 67888889999999


Q ss_pred             CCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEE
Q 013717          280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLM  357 (437)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~  357 (437)
                      +.......+......-.+-.+..+.+-||++.+++++.|+.|+||..++...    ...+..|...|.+++|+++  ++|
T Consensus       234 l~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p----LAVLkyHsagvn~vAfspd~~lmA  309 (323)
T KOG0322|consen  234 LNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP----LAVLKYHSAGVNAVAFSPDCELMA  309 (323)
T ss_pred             eccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc----hhhhhhhhcceeEEEeCCCCchhh
Confidence            8765444444444444456788999999999999999999999999988763    3445679999999999987  999


Q ss_pred             EEeCCCcEEEeeC
Q 013717          358 SGSADRTVRIWQR  370 (437)
Q Consensus       358 ~~~~dg~i~iwd~  370 (437)
                      +++.|++|.+|++
T Consensus       310 aaskD~rISLWkL  322 (323)
T KOG0322|consen  310 AASKDARISLWKL  322 (323)
T ss_pred             hccCCceEEeeec
Confidence            9999999999986

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=1.9e-19  Score=157.14  Aligned_cols=211  Identities=26%  Similarity=0.432  Sum_probs=168.5

Q ss_pred             eeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCC--------cceEEEeecccccEEEEEEecCCe-EEEEeCCCeE
Q 013717          207 LWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASD--------LRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKI  275 (437)
Q Consensus       207 ~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v  275 (437)
                      .+..|...|..+.|++  ..|++++.||.|++|+++.        .+++.++++|.++|.|+++.+++. +++|+.||.|
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence            4467889999999998  9999999999999999932        356888999999999999999999 9999999999


Q ss_pred             EEecCCCCcc------cceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEee------------
Q 013717          276 RVWAKPFNEK------RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTG------------  337 (437)
Q Consensus       276 ~iwd~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------  337 (437)
                      +.|++..+..      .......+.+|...+..+++++....|++++.||+++.|+...... ..+..            
T Consensus       369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~  447 (577)
T KOG0642|consen  369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR  447 (577)
T ss_pred             eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence            9997653322      2234557789999999999999988999999999999999764332 00000            


Q ss_pred             --e---------------------------e--cc-----cccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeee
Q 013717          338 --A---------------------------L--RG-----HGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCL  379 (437)
Q Consensus       338 --~---------------------------~--~~-----~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~  379 (437)
                        .                           +  ..     ....+..+.++++  +.+++..|+.|+++|..++.   .+
T Consensus       448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~---~l  524 (577)
T KOG0642|consen  448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK---IL  524 (577)
T ss_pred             ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc---cc
Confidence              0                           0  00     0012233333333  88999999999999999877   88


Q ss_pred             eeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCC
Q 013717          380 AVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPN  426 (437)
Q Consensus       380 ~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  426 (437)
                      ....+|...++++++.|++.     +|++++.||.+++|++......
T Consensus       525 ~s~~a~~~svtslai~~ng~-----~l~s~s~d~sv~l~kld~k~~~  566 (577)
T KOG0642|consen  525 HSMVAHKDSVTSLAIDPNGP-----YLMSGSHDGSVRLWKLDVKTCV  566 (577)
T ss_pred             hheeeccceecceeecCCCc-----eEEeecCCceeehhhccchhee
Confidence            89999999999999999996     7999999999999999766543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=2e-17  Score=129.71  Aligned_cols=263  Identities=15%  Similarity=0.151  Sum_probs=179.6

Q ss_pred             eeeccccccccccCCCceeEEecC---------CCcceeeeec-CccCCeEEEEeeCCEEEEEecCeEEEEeCCCCce--
Q 013717           62 LQTLPSVPSLQKLSPDETINFSSA---------SHLCINSVQL-GHKLPIGCIAVHHNFLYAASSHEINVYDRTGTTW--  129 (437)
Q Consensus        62 ~~~~~~~~~~~s~s~dg~i~~~~~---------~~~~~~~~~~-~h~~~V~~l~~~~~~l~s~~~d~v~vwd~~~~~~--  129 (437)
                      -...|+...++.++.+|+|.+.++         .+....+... +|.++|+.++|..++|++|+++.|+=|..+....  
T Consensus        16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E~~es~   95 (325)
T KOG0649|consen   16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNEEEESL   95 (325)
T ss_pred             HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEeeehhhhhhc
Confidence            345677778899999999999887         2233445555 9999999999999999999988999988765311  


Q ss_pred             ------eeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEe
Q 013717          130 ------TSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVR  201 (437)
Q Consensus       130 ------~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (437)
                            +...........--.|+++-..|..  ++.++.|+.+.-||+++++..+.+                       
T Consensus        96 ~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~-----------------------  152 (325)
T KOG0649|consen   96 ATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY-----------------------  152 (325)
T ss_pred             cchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE-----------------------
Confidence                  1111110001122457888887544  888889999999999999755444                       


Q ss_pred             eccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecc----------cccEEEEEEecCCeEEEE
Q 013717          202 RHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAH----------EDAVNAVAVSAGGTVYTG  269 (437)
Q Consensus       202 ~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------~~~v~~~~~~~~~~l~~~  269 (437)
                             .+|++.|.++....  ..+++|++||++|+||.++++++..+...          ...|-+++.+  ..-+++
T Consensus       153 -------rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvC  223 (325)
T KOG0649|consen  153 -------RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVC  223 (325)
T ss_pred             -------cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEe
Confidence                   58999999998844  89999999999999999999998887522          2345566553  344555


Q ss_pred             eCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEE
Q 013717          270 SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCL  349 (437)
Q Consensus       270 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~  349 (437)
                      +....+.+|.++..+.    ...+. -...+..+.|..|  .+++++..+.|.-|.+...     +............+.
T Consensus       224 GgGp~lslwhLrsse~----t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gv-----l~a~ip~~s~~c~s~  291 (325)
T KOG0649|consen  224 GGGPKLSLWHLRSSES----TCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGV-----LQANIPVESTACYSA  291 (325)
T ss_pred             cCCCceeEEeccCCCc----eEEEe-cccceeEeeeecc--eEEEeccccceeeeeeccE-----EEEeccCCccceeee
Confidence            6678899999876542    22222 3456777888754  7888888888999987531     222222222233333


Q ss_pred             EeeCC---EEEEEeCCCcEEEe
Q 013717          350 INVAG---LLMSGSADRTVRIW  368 (437)
Q Consensus       350 ~~~~~---~l~~~~~dg~i~iw  368 (437)
                      +++-.   +|-.++....+.|+
T Consensus       292 s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  292 SWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             cccCCceEEEEecccceeeeee
Confidence            33322   55556666666665

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.82  E-value=5e-18  Score=155.40  Aligned_cols=273  Identities=16%  Similarity=0.154  Sum_probs=191.7

Q ss_pred             CceeEEecCCCcceeeeecCccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeeeecc-ccCCCCcccEEEEEEe
Q 013717           77 DETINFSSASHLCINSVQLGHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSINTF-NDNDSSSGSVKSVTFC  151 (437)
Q Consensus        77 dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~-~~~~~h~~~v~~l~~~  151 (437)
                      ++.+.+|+......+...+.-...|.|+.|+   +++||.|..+ .|.+||+..+.......+ .....|..++..+.|.
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            3479999998877777778888999999998   8899999999 999999998644222221 1224699999999997


Q ss_pred             CC----eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---Ce
Q 013717          152 DG----KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GL  224 (437)
Q Consensus       152 ~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~  224 (437)
                      .+    .+++++.||.|..|+++.-..............                  ...-......+++++|.+   ..
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~------------------~~~~~~~~~~~t~~~F~~~~p~~  362 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH------------------KGQQSSKAVGATSLKFEPTDPNH  362 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccc------------------cccccccccceeeEeeccCCCce
Confidence            32    299999999999998775433222111110000                  000012334678888876   88


Q ss_pred             EEEEECCCcEEEEECCCcc--------eEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC
Q 013717          225 IYSVSWDKSLKIWRASDLR--------CLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK  295 (437)
Q Consensus       225 l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  295 (437)
                      ++.|+.+|.|.-=+-...+        ....+..|.+.|+++.++|-+. ++..+.|.+++||....   ...++..+..
T Consensus       363 FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~---~~~Pl~~~~~  439 (555)
T KOG1587|consen  363 FIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV---IASPLLSLDS  439 (555)
T ss_pred             EEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC---CCCcchhhhh
Confidence            9999999999873332221        1234457889999999999887 44444499999996542   2345666666


Q ss_pred             ccccEEEEEEccCC-CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCCC
Q 013717          296 HKSAVNALALSDDG-TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       296 ~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~  372 (437)
                      +...+++++|||-. ..|+++..||.|.+||+.............  +......+.+.  +..|++|...|.+.+|++..
T Consensus       440 ~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  440 SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc--cccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            77789999999964 478888899999999997654443333222  23333444444  55999999999999999964

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.82  E-value=1.7e-18  Score=154.10  Aligned_cols=268  Identities=16%  Similarity=0.242  Sum_probs=200.8

Q ss_pred             CeEEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCccc
Q 013717          100 PIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHH  175 (437)
Q Consensus       100 ~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~  175 (437)
                      .|..++|.  |..|+.+.++.+.+||.+.|  ..+.++   ++|...|.|++|+.++  +++|+.|..|.+|+..-....
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG--~llqtL---KgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L   88 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDG--TLLQPL---KGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL   88 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCc--cccccc---ccccceEEEEEEccCCceeccCCCceeEEEeccccccee
Confidence            78899998  88888888889999999985  445555   7899999999999554  999999999999986533211


Q ss_pred             ccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccc
Q 013717          176 KLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHED  253 (437)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  253 (437)
                      +                                ..|.+.|.|+.|+|  ..+++++- ...-+|........ .. ....
T Consensus        89 k--------------------------------YSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~-K~-kss~  133 (1081)
T KOG1538|consen   89 K--------------------------------YSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVS-KH-KSSS  133 (1081)
T ss_pred             e--------------------------------eccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHH-hh-hhhe
Confidence            1                                35999999999999  66776654 35678887554322 22 2456


Q ss_pred             cEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC-----CEEEEEeCCCcEEEEECC
Q 013717          254 AVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG-----TVLFSGACDRSILVWDRE  327 (437)
Q Consensus       254 ~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~l~~~~~dg~i~i~d~~  327 (437)
                      .+.+.+|..||. ++.|-.+|+|.+-+-.  .+....+..--+.+++|.+++|+|..     ..+++.....++.+|.+.
T Consensus       134 R~~~CsWtnDGqylalG~~nGTIsiRNk~--gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls  211 (1081)
T KOG1538|consen  134 RIICCSWTNDGQYLALGMFNGTISIRNKN--GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS  211 (1081)
T ss_pred             eEEEeeecCCCcEEEEeccCceEEeecCC--CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec
Confidence            788999999999 9999999999997432  11222233333577899999999953     377888888888888876


Q ss_pred             CCccceEEeeeecccccceEEE--EeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEE
Q 013717          328 DSANHMVVTGALRGHGKAILCL--INVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVS  405 (437)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~i~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  405 (437)
                      ..     .+...+.-.-...|+  ..+|.+++.|+.|+.+.+|-.+.    ..+.++......|+.++..|++     ++
T Consensus       212 G~-----~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G----vrLGTvg~~D~WIWtV~~~PNs-----Q~  277 (1081)
T KOG1538|consen  212 GK-----QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG----VRLGTVGEQDSWIWTVQAKPNS-----QY  277 (1081)
T ss_pred             ce-----eecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC----eEEeeccccceeEEEEEEccCC-----ce
Confidence            42     222111222223344  45677999999999999997664    3677777788899999999998     48


Q ss_pred             EEEecCCCcEEEEeeccC
Q 013717          406 VFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       406 l~s~~~dg~i~iw~~~~~  423 (437)
                      ++.|+.||+|-.|++-..
T Consensus       278 v~~GCqDGTiACyNl~fS  295 (1081)
T KOG1538|consen  278 VVVGCQDGTIACYNLIFS  295 (1081)
T ss_pred             EEEEEccCeeehhhhHHh
Confidence            999999999999987654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.82  E-value=5.8e-18  Score=154.99  Aligned_cols=266  Identities=14%  Similarity=0.145  Sum_probs=191.8

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC---CeEEEEecCCeEEEEeCCCCcccc--cccccCccccceeeec
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD---GKIFTAHQDCKIRVWQLTPTKHHK--LKTTLPTVNDRLLRFM  192 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~  192 (437)
                      .+.||+++.. ......+    .-...|++++|++   +.++.|+.+|.|.+||+..+....  .+...           
T Consensus       223 ~~~vW~~~~p-~~Pe~~~----~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~-----------  286 (555)
T KOG1587|consen  223 VLLVWSLKNP-NTPELVL----ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSAL-----------  286 (555)
T ss_pred             eEEEEecCCC-CCceEEE----ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccc-----------
Confidence            5999999985 3333333    3568899999984   449999999999999999776421  11111           


Q ss_pred             CCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEEEECCCcEEEEECCCcceEEE------ee------cccccEE
Q 013717          193 LPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYSVSWDKSLKIWRASDLRCLES------IK------AHEDAVN  256 (437)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~------~~------~~~~~v~  256 (437)
                                     -..|..+++.+.|..    .-+++++.||.|..|+++.......      ..      .....++
T Consensus       287 ---------------~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t  351 (555)
T KOG1587|consen  287 ---------------EVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGAT  351 (555)
T ss_pred             ---------------cccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccccccccccccccee
Confidence                           125899999999965    4599999999999999875433111      11      1234688


Q ss_pred             EEEEecCCe--EEEEeCCCeEEEecCCCCcccc----eeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 013717          257 AVAVSAGGT--VYTGSADRKIRVWAKPFNEKRH----ALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSA  330 (437)
Q Consensus       257 ~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  330 (437)
                      +++|.+...  +++|+.+|.|..-+........    +....+..|.++|+++.++|-+..++..+.|-+++||.-....
T Consensus       352 ~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~  431 (555)
T KOG1587|consen  352 SLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA  431 (555)
T ss_pred             eEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC
Confidence            999988665  9999999999874332222222    3344556788999999999977766655569999999976221


Q ss_pred             cceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEE
Q 013717          331 NHMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVF  407 (437)
Q Consensus       331 ~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~  407 (437)
                      .   ....+..+...+++++|++.   .++++..||.|.+||+.... ..++.....+....+.+.|++.+     ++|+
T Consensus       432 ~---Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~-~~Pv~s~~~~~~~l~~~~~s~~g-----~~la  502 (555)
T KOG1587|consen  432 S---PLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD-EEPVLSQKVCSPALTRVRWSPNG-----KLLA  502 (555)
T ss_pred             C---cchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc-cCCcccccccccccceeecCCCC-----cEEE
Confidence            1   22234456667999999876   89999999999999998654 23555555556677788888877     4899


Q ss_pred             EecCCCcEEEEeeccC
Q 013717          408 SGSLDGEIRAWQVSVS  423 (437)
Q Consensus       408 s~~~dg~i~iw~~~~~  423 (437)
                      .|+..|++.+|++...
T Consensus       503 vGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  503 VGDANGTTHILKLSES  518 (555)
T ss_pred             EecCCCcEEEEEcCch
Confidence            9999999999999754

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.82  E-value=9.9e-20  Score=165.65  Aligned_cols=271  Identities=20%  Similarity=0.254  Sum_probs=202.6

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCC
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLT  170 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~  170 (437)
                      ||...|+|+.|+  |.++++|++| .|+||..++  ..++..+   .||.+.|+.++.+.+.  +++++.|..|++|.+.
T Consensus       188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et--~~~lAs~---rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET--ARCLASC---RGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             hhhhheeeeeeccccceEeecCccceeeeeeccc--hhhhccC---CCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            999999999999  9999999999 999999888  4556665   7899999999998555  8899999999999999


Q ss_pred             CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEe--
Q 013717          171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESI--  248 (437)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--  248 (437)
                      .+..+..+                              .+|++.|++++|+|..  +.+.||++++||.+ ...+...  
T Consensus       263 ~~~pvsvL------------------------------rghtgavtaiafsP~~--sss~dgt~~~wd~r-~~~~~y~pr  309 (1113)
T KOG0644|consen  263 DGAPVSVL------------------------------RGHTGAVTAIAFSPRA--SSSDDGTCRIWDAR-LEPRIYVPR  309 (1113)
T ss_pred             CCchHHHH------------------------------hccccceeeeccCccc--cCCCCCceEecccc-ccccccCCC
Confidence            88765554                              4799999999999943  77899999999987 2221111  


Q ss_pred             --e-cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC-CEEEEEeCCCcEEE
Q 013717          249 --K-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG-TVLFSGACDRSILV  323 (437)
Q Consensus       249 --~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i  323 (437)
                        + ....-+.++.+...+. +++|+.|+.-..|.+..-.          .+...+.-+.++.+- .+.+++-.+-.+.+
T Consensus       310 p~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~----------~~~~~lif~t~ssd~~~~~~~ar~~~~~~v  379 (1113)
T KOG0644|consen  310 PLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA----------WRSNLLIFVTRSSDLSSIVVTARNDHRLCV  379 (1113)
T ss_pred             CCCcccccceeeeeccccccccccccCCcccccchhhHhh----------hhccceEEEeccccccccceeeeeeeEeee
Confidence              1 1234566677777777 9999999999988553211          122222222222222 46667777888999


Q ss_pred             EECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCC
Q 013717          324 WDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ  400 (437)
Q Consensus       324 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  400 (437)
                      |++.++.    +.+...+|...+..+.+++-   ...+++.||...|||+-.+...+..  ..+ .+.+..-.|++++. 
T Consensus       380 wnl~~g~----l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y--~~g-h~kl~d~kFSqdgt-  451 (1113)
T KOG0644|consen  380 WNLYTGQ----LLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY--FIG-HGKLVDGKFSQDGT-  451 (1113)
T ss_pred             eecccch----hhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceee--ecc-cceeeccccCCCCc-
Confidence            9998876    45556778888888877654   7788999999999999877732222  244 45667778999984 


Q ss_pred             CceEEEEEecCCCcEEEEeeccCCCC
Q 013717          401 NGVVSVFSGSLDGEIRAWQVSVSCPN  426 (437)
Q Consensus       401 ~~~~~l~s~~~dg~i~iw~~~~~~~~  426 (437)
                          .++....-|.+.|.....++++
T Consensus       452 ----s~~lsd~hgql~i~g~gqs~s~  473 (1113)
T KOG0644|consen  452 ----SIALSDDHGQLYILGTGQSKSQ  473 (1113)
T ss_pred             ----eEecCCCCCceEEeccCCCccc
Confidence                4777777789999887776654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.82  E-value=3.7e-18  Score=137.16  Aligned_cols=205  Identities=16%  Similarity=0.182  Sum_probs=155.9

Q ss_pred             cCCCcEEEEEeCC-------CeEEEEECCCcEEEEECCCcce----EEEe-----ecccccEEEEEEecCCe--EEEEeC
Q 013717          210 EHGDAVTGLAVNN-------GLIYSVSWDKSLKIWRASDLRC----LESI-----KAHEDAVNAVAVSAGGT--VYTGSA  271 (437)
Q Consensus       210 ~~~~~v~~~~~~~-------~~l~~~~~dg~i~iwd~~~~~~----~~~~-----~~~~~~v~~~~~~~~~~--l~~~~~  271 (437)
                      .|..+++.+.|.|       ++|++.  +-.+|+|.+...+.    ...+     ..+..++++..|+.-..  +.+.+-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            5888999999977       345544  34799999874221    1111     14567899999986443  889999


Q ss_pred             CCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC-CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEE
Q 013717          272 DRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG-TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI  350 (437)
Q Consensus       272 dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~  350 (437)
                      |-+..|||+..+. .+.....+-+|...|..++|...+ +.|++.+.||.|++||++..+....+ ..-.....+...++
T Consensus       172 DTTCTiWdie~~~-~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII-YE~p~~~~pLlRLs  249 (364)
T KOG0290|consen  172 DTTCTIWDIETGV-SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII-YEDPSPSTPLLRLS  249 (364)
T ss_pred             cCeEEEEEEeecc-ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEE-ecCCCCCCcceeec
Confidence            9999999998652 223445566899999999999865 48899999999999999976543322 22222245677888


Q ss_pred             eeCC---EEEEEeCC-CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          351 NVAG---LLMSGSAD-RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       351 ~~~~---~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      |+.+   ++|+-..| ..|.|.|++...  .++..+++|.+.|++|+|.|....    .|+|+|+|..+.+||+....
T Consensus       250 wnkqDpnymATf~~dS~~V~iLDiR~P~--tpva~L~~H~a~VNgIaWaPhS~~----hictaGDD~qaliWDl~q~~  321 (364)
T KOG0290|consen  250 WNKQDPNYMATFAMDSNKVVILDIRVPC--TPVARLRNHQASVNGIAWAPHSSS----HICTAGDDCQALIWDLQQMP  321 (364)
T ss_pred             cCcCCchHHhhhhcCCceEEEEEecCCC--cceehhhcCcccccceEecCCCCc----eeeecCCcceEEEEeccccc
Confidence            8754   88876665 469999999866  688999999999999999998875    89999999999999998653

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.82  E-value=4e-16  Score=129.74  Aligned_cols=223  Identities=17%  Similarity=0.192  Sum_probs=169.0

Q ss_pred             ccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEeeCCEEEEEecC---eEEEEeCCCCceeeeeccccCCCCcc
Q 013717           67 SVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAASSH---EINVYDRTGTTWTSINTFNDNDSSSG  143 (437)
Q Consensus        67 ~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~l~s~~~d---~v~vwd~~~~~~~~~~~~~~~~~h~~  143 (437)
                      ....+..++.||. .+++.++..++.........|.-+-|+..++|..+.+   .+++.+.+.+...+...      ...
T Consensus        16 d~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~------fpt   88 (391)
T KOG2110|consen   16 DSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF------FPT   88 (391)
T ss_pred             ceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEe------cCC
Confidence            3344555556664 4445555444333334455677888888888888766   59999998854444444      467


Q ss_pred             cEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-
Q 013717          144 SVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-  222 (437)
Q Consensus       144 ~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  222 (437)
                      .|.++.++-++|+.+-.+. |.|||+++.+.+..+...+                           .+...+.++.+++ 
T Consensus        89 ~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~---------------------------~n~~gl~AlS~n~~  140 (391)
T KOG2110|consen   89 SILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTP---------------------------PNPKGLCALSPNNA  140 (391)
T ss_pred             ceEEEEEccceEEEEEccc-EEEEecccceeehhhhccC---------------------------CCccceEeeccCCC
Confidence            8999999999988887665 9999999998777776553                           2555677777776 


Q ss_pred             -CeEEEE--ECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCe-EEEecCCCCcccceeeEEeeCc-
Q 013717          223 -GLIYSV--SWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRK-IRVWAKPFNEKRHALIATLEKH-  296 (437)
Q Consensus       223 -~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~-v~iwd~~~~~~~~~~~~~~~~~-  296 (437)
                       .+++.=  ...|.|.+||+.+.+.+..+..|++.+-+++|+++|. ||+++..|+ ||||.+..+.    .+.+|+.. 
T Consensus       141 n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~----kl~eFRRG~  216 (391)
T KOG2110|consen  141 NCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ----KLYEFRRGT  216 (391)
T ss_pred             CceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCcc----EeeeeeCCc
Confidence             455543  2468999999999999999999999999999999999 999999887 6899876554    45555533 


Q ss_pred             -cccEEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 013717          297 -KSAVNALALSDDGTVLFSGACDRSILVWDRED  328 (437)
Q Consensus       297 -~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (437)
                       ...|.+++|+|++.+|++.+..++|+||.++.
T Consensus       217 ~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  217 YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             eeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence             35688999999999999999999999999874

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.81  E-value=7.9e-18  Score=159.51  Aligned_cols=300  Identities=17%  Similarity=0.270  Sum_probs=200.2

Q ss_pred             Ccceeeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCC-----ceeeeeccccCCCCcccEEEEEEe--CCe
Q 013717           87 HLCINSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGT-----TWTSINTFNDNDSSSGSVKSVTFC--DGK  154 (437)
Q Consensus        87 ~~~~~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~-----~~~~~~~~~~~~~h~~~v~~l~~~--~~~  154 (437)
                      ..+.++..+ .|...|..++.+   +.++++||.| +|++||...-     ..+...++   ......+.++...  .+.
T Consensus      1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty---s~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY---SPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE---eccCCceEEEEeccCCCe
Confidence            345677777 999999999998   5899999999 9999998752     12222232   2245677777776  445


Q ss_pred             EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE-EeCC---C-eEEEEE
Q 013717          155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL-AVNN---G-LIYSVS  229 (437)
Q Consensus       155 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~---~-~l~~~~  229 (437)
                      ++.++.||.|++.+++...........    .+.                 .- ....+.+.++ ++..   . .++.+.
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~----~ri-----------------~n-~~~~g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQ----VRI-----------------PN-LKKDGVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeee----eec-----------------cc-ccCCCceEEeecccccccceeEEEEE
Confidence            999999999999999863111100000    000                 00 0122233333 3322   3 788888


Q ss_pred             CCCcEEEEECCCcceEEEee--cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEee-CccccEEEEEE
Q 013717          230 WDKSLKIWRASDLRCLESIK--AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLE-KHKSAVNALAL  305 (437)
Q Consensus       230 ~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~  305 (437)
                      .-+.|..||++.......++  ...+.|++++.+|.+. ++.|+..|.+.+||++.+.    ++..+. ++..+|+.+..
T Consensus      1171 ~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~----~i~sw~~P~~~~i~~v~~ 1246 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV----PILSWEHPARAPIRHVWL 1246 (1431)
T ss_pred             eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCc----eeecccCcccCCcceEEe
Confidence            89999999998877666654  3467899999999999 9999999999999998765    333332 35578888887


Q ss_pred             ccC---CCEEEEE-e-CCCcEEEEECCCCccceEEeeee---------c------cc-ccceEEEEee-CCEEEEEeCCC
Q 013717          306 SDD---GTVLFSG-A-CDRSILVWDREDSANHMVVTGAL---------R------GH-GKAILCLINV-AGLLMSGSADR  363 (437)
Q Consensus       306 ~~~---~~~l~~~-~-~dg~i~i~d~~~~~~~~~~~~~~---------~------~~-~~~i~~~~~~-~~~l~~~~~dg  363 (437)
                      +|-   ....+++ + ..+.|.+|++.++.+...+...-         .      .+ ...+.+.-.. +.++++|+.|.
T Consensus      1247 ~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~ 1326 (1431)
T KOG1240|consen 1247 CPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDM 1326 (1431)
T ss_pred             eccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCcc
Confidence            773   2344444 4 57889999999886655543320         0      00 1112222223 33999999999


Q ss_pred             cEEEeeCCCCCCe-----------------------------------------e----eee--------eecCCCCCee
Q 013717          364 TVRIWQRGSDGRF-----------------------------------------G----CLA--------VLEGHTKPVK  390 (437)
Q Consensus       364 ~i~iwd~~~~~~~-----------------------------------------~----~~~--------~~~~h~~~v~  390 (437)
                      .|+.||......-                                         .    ...        .-..|..+|+
T Consensus      1327 kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~It 1406 (1431)
T KOG1240|consen 1327 KIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPIT 1406 (1431)
T ss_pred             ceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhh
Confidence            9999996542210                                         0    000        1124788999


Q ss_pred             EEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717          391 SLTAVTEEGQNGVVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       391 ~l~~~~~~~~~~~~~l~s~~~dg~i~iw~  419 (437)
                      +|++.....    .+|++++.||.|++|.
T Consensus      1407 dma~~~~~q----~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1407 DMATLKSEQ----PLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             hhhhhccCc----cEEEEecCCCeeeecC
Confidence            999987663    4999999999999995

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.3e-16  Score=146.74  Aligned_cols=288  Identities=19%  Similarity=0.322  Sum_probs=211.5

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCC--CceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEe
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTG--TTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQ  168 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd  168 (437)
                      .|...++|.+++  ++++|+|..| .|.+|.--.  ........+   .=|...|.++.|+.++  |++|+..|.+.+|.
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~l---HWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq  279 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLL---HWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQ  279 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEE---EecccccceeEEecCCceEeecccceEEEEEe
Confidence            788889999999  9999999999 999996543  211122222   3488999999999666  99999999999999


Q ss_pred             CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEE
Q 013717          169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLE  246 (437)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~  246 (437)
                      +.+++...                               +..-.++|..+.++|  .+.+....|+.|.+....+.+...
T Consensus       280 ~~T~~kqf-------------------------------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~  328 (792)
T KOG1963|consen  280 LETGKKQF-------------------------------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS  328 (792)
T ss_pred             ecCCCccc-------------------------------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh
Confidence            99887222                               123678899999998  788888899999999887766544


Q ss_pred             Eeec-----------ccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEee-------CccccEEEEEEcc
Q 013717          247 SIKA-----------HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLE-------KHKSAVNALALSD  307 (437)
Q Consensus       247 ~~~~-----------~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~  307 (437)
                      ++.+           ..+-.+.++++|.-. ++..+..|.|.+||+.++....+......       .+.-.++.++.+-
T Consensus       329 tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~  408 (792)
T KOG1963|consen  329 TISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR  408 (792)
T ss_pred             hccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc
Confidence            4432           233467788888444 88899999999999987664433322221       1223577888888


Q ss_pred             CCCEEEEEeC--------C--CcEEEEECCCCccceEEeeee-cccccceEEEEeeC----CEEEEEeCCCcEEEeeCCC
Q 013717          308 DGTVLFSGAC--------D--RSILVWDREDSANHMVVTGAL-RGHGKAILCLINVA----GLLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       308 ~~~~l~~~~~--------d--g~i~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~----~~l~~~~~dg~i~iwd~~~  372 (437)
                      .|.++++.-.        |  -.+++|-.......+.+.... ..|...+....+..    ...++++.||.++||-+..
T Consensus       409 ~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~  488 (792)
T KOG1963|consen  409 FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTD  488 (792)
T ss_pred             cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEec
Confidence            8999998632        3  357789877665555554433 45665554444332    2889999999999998843


Q ss_pred             CC-------CeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          373 DG-------RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       373 ~~-------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      .+       .+.|...-.-|..++++++|+.+|      -+++++.|+.|.+||..+.
T Consensus       489 ~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dG------slla~s~~~~Itiwd~~~~  540 (792)
T KOG1963|consen  489 DSNIYKKSSNWTCKAIGSYHKTPITALCFSQDG------SLLAVSFDDTITIWDYDTK  540 (792)
T ss_pred             ccccCcCccceEEeeeeccccCcccchhhcCCC------cEEEEecCCEEEEecCCCh
Confidence            22       355665555689999999999999      4888999999999999884

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=6.6e-19  Score=153.73  Aligned_cols=261  Identities=20%  Similarity=0.276  Sum_probs=180.3

Q ss_pred             eeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCC------CceeeeeccccCCCCcccEEEEEEeCCe--EEEE
Q 013717           91 NSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTG------TTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTA  158 (437)
Q Consensus        91 ~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~------~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~  158 (437)
                      +..++ .|.+.|++++|.  ...|++++.+ ++++|+++.      ...+.+.+|   .+|.++|.|+++..+.  +++|
T Consensus       286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf---raH~gPVl~v~v~~n~~~~ysg  362 (577)
T KOG0642|consen  286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF---RAHEGPVLCVVVPSNGEHCYSG  362 (577)
T ss_pred             eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEE---ecccCceEEEEecCCceEEEee
Confidence            33466 899999999998  7899999999 999999932      233444444   8999999999999665  9999


Q ss_pred             ecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEE
Q 013717          159 HQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKI  236 (437)
Q Consensus       159 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~i  236 (437)
                      +.||+|+.|++....-......                    .......+.||.+.|+.+++++  ..|++++.||++++
T Consensus       363 g~Dg~I~~w~~p~n~dp~ds~d--------------------p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~  422 (577)
T KOG0642|consen  363 GIDGTIRCWNLPPNQDPDDSYD--------------------PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRL  422 (577)
T ss_pred             ccCceeeeeccCCCCCcccccC--------------------cchhccceeccccceeeeeecccccceeeecCCceEEe
Confidence            9999999998763221100000                    0011234568999999999998  88999999999999


Q ss_pred             EECCCcceEEEeec--ccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEee-------CccccEEEEEE
Q 013717          237 WRASDLRCLESIKA--HEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLE-------KHKSAVNALAL  305 (437)
Q Consensus       237 wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------~~~~~i~~~~~  305 (437)
                      |+...... .++..  ..+.-.++.+-....  .++...-+.-.++++....    .+..+.       .....+..+..
T Consensus       423 w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s----~~~~~~s~~~~~~~~~~~in~vVs  497 (577)
T KOG0642|consen  423 WEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVS----DLLIFESSASPGPRRYPQINKVVS  497 (577)
T ss_pred             eccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhh----heeeccccCCCcccccCccceEEe
Confidence            99876655 33321  223334455432221  2222222333333332211    111111       11245778889


Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeec
Q 013717          306 SDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLE  383 (437)
Q Consensus       306 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  383 (437)
                      .|.+.+.+++..|+.|+++|..++.    +......|...+.+++..++  +|++++.|+.+++|.+....   ++....
T Consensus       498 ~~~~~~~~~~hed~~Ir~~dn~~~~----~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~---~~~es~  570 (577)
T KOG0642|consen  498 HPTADITFTAHEDRSIRFFDNKTGK----ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT---CVLEST  570 (577)
T ss_pred             cCCCCeeEecccCCceecccccccc----cchheeeccceecceeecCCCceEEeecCCceeehhhccchh---eeeccc
Confidence            9999999999999999999998877    55556678888888887765  99999999999999987644   555555


Q ss_pred             CCC
Q 013717          384 GHT  386 (437)
Q Consensus       384 ~h~  386 (437)
                      .|.
T Consensus       571 ~~r  573 (577)
T KOG0642|consen  571 AHR  573 (577)
T ss_pred             ccc
Confidence            553

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.80  E-value=1.6e-17  Score=135.42  Aligned_cols=203  Identities=17%  Similarity=0.208  Sum_probs=159.8

Q ss_pred             ccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCc-eeeeeccccCCCCcccEEEEEEeCC--eEEEEecCCeEEEEeCC
Q 013717           97 HKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTT-WTSINTFNDNDSSSGSVKSVTFCDG--KIFTAHQDCKIRVWQLT  170 (437)
Q Consensus        97 h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~  170 (437)
                      -..+|+|.+|+  +..+|.+-.+ .|.||...... ++...++   ..|...|++|+|.+.  +|++|+.|..-++|...
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl---s~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL---SEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceeh---hhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence            35789999999  7888888888 99999998876 7777777   679999999999965  49999999999999984


Q ss_pred             CC-cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceE--
Q 013717          171 PT-KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCL--  245 (437)
Q Consensus       171 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~--  245 (437)
                      .+ +-...+                            ++..+....+++.|+|  +.+++|+....|.||-.+..+--  
T Consensus        86 ~~~~Wkptl----------------------------vLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV  137 (361)
T KOG1523|consen   86 SGGTWKPTL----------------------------VLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV  137 (361)
T ss_pred             CCCeeccce----------------------------eEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh
Confidence            33 322222                            2235888999999999  99999999999999977654321  


Q ss_pred             --EEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCC--------------cccceeeEEeeCccccEEEEEEccC
Q 013717          246 --ESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFN--------------EKRHALIATLEKHKSAVNALALSDD  308 (437)
Q Consensus       246 --~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~--------------~~~~~~~~~~~~~~~~i~~~~~~~~  308 (437)
                        +.-+.+...|+++.|+|++- +++|+.|+..++|..--.              ..-+.++.++....+.+..+.|+|+
T Consensus       138 sKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s  217 (361)
T KOG1523|consen  138 SKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS  217 (361)
T ss_pred             hhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC
Confidence              12235678899999999998 999999999999953211              1112333444456788999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCc
Q 013717          309 GTVLFSGACDRSILVWDREDSA  330 (437)
Q Consensus       309 ~~~l~~~~~dg~i~i~d~~~~~  330 (437)
                      |..|+-.+.|+.+.+-|...+.
T Consensus       218 G~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  218 GNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             CCEeeEecCCCceEEeecCCCc
Confidence            9999999999999999987654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.80  E-value=5.2e-16  Score=144.81  Aligned_cols=280  Identities=31%  Similarity=0.525  Sum_probs=209.4

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCc-ccEEEEEE-eCCe---EEEE-ecCCeEEE
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSS-GSVKSVTF-CDGK---IFTA-HQDCKIRV  166 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~-~~v~~l~~-~~~~---l~s~-~~dg~i~i  166 (437)
                      +|...|.++.+.  +..++.++.+ .+.+|+...+. .....+   ..+. ..+..+.+ .++.   ++.. ..|+.+.+
T Consensus        63 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  138 (466)
T COG2319          63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSL---EGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL  138 (466)
T ss_pred             eccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEE---eccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence            899999999999  8888888878 99999999863 133333   2222 46666666 4322   3443 44999999


Q ss_pred             EeCCC-CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC-CCcEEEEECCCc
Q 013717          167 WQLTP-TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW-DKSLKIWRASDL  242 (437)
Q Consensus       167 wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-dg~i~iwd~~~~  242 (437)
                      |+... ....                              ..+..|...|..+++.+  ..+++++. |+.+++|++..+
T Consensus       139 ~~~~~~~~~~------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (466)
T COG2319         139 WDLSTPGKLI------------------------------RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG  188 (466)
T ss_pred             EEecCCCeEE------------------------------EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC
Confidence            99986 2221                              22246899999999999  57777775 999999999998


Q ss_pred             ceEEEeecccccEEEEEEecCCe-EEEE-eCCCeEEEecCCCCcccceeeE-EeeCccccEEEEEEccCCCEEEEEeCCC
Q 013717          243 RCLESIKAHEDAVNAVAVSAGGT-VYTG-SADRKIRVWAKPFNEKRHALIA-TLEKHKSAVNALALSDDGTVLFSGACDR  319 (437)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~-l~~~-~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg  319 (437)
                      +.+..+..|...|.+++++|++. ++.+ +.|+.|++||....    .... .+..|.... ...|+|++.++++++.|+
T Consensus       189 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~  263 (466)
T COG2319         189 KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG----KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDG  263 (466)
T ss_pred             ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC----cEEeeecCCCCcce-eEeECCCCCEEEEecCCC
Confidence            88889888999999999999996 5554 89999999976522    3444 566777665 448999998999999999


Q ss_pred             cEEEEECCCCccceEEeeeecccccceEEEEeeC--CEEEEEeCCCcEEEeeCCCCCCeeeeeee--cCCCCCeeEEEEE
Q 013717          320 SILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLLMSGSADRTVRIWQRGSDGRFGCLAVL--EGHTKPVKSLTAV  395 (437)
Q Consensus       320 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~l~~~  395 (437)
                      .+++|+++........   ..+|...+.++.+.+  ..+++++.|+.+++|+.....   .....  ..|...+..+.| 
T Consensus       264 ~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-  336 (466)
T COG2319         264 TIRLWDLRSSSSLLRT---LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK---LLSSLTLKGHEGPVSSLSF-  336 (466)
T ss_pred             cEEEeeecCCCcEEEE---EecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc---eEEEeeecccCCceEEEEE-
Confidence            9999999876541111   156788888888876  477778889999999888766   33333  478888999999 


Q ss_pred             ccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          396 TEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       396 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      +....   .++..+..|+.+++|++....
T Consensus       337 ~~~~~---~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         337 SPDGS---LLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             CCCCC---EEEEeecCCCcEEeeecCCCc
Confidence            53212   244444788999999998775

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.80  E-value=8.5e-16  Score=127.83  Aligned_cols=231  Identities=15%  Similarity=0.191  Sum_probs=170.1

Q ss_pred             CCeEEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecC--CeEEEEeCCCCcc
Q 013717           99 LPIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQD--CKIRVWQLTPTKH  174 (437)
Q Consensus        99 ~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~d--g~i~iwd~~~~~~  174 (437)
                      ..+..+.|+  ...|..|+.+--++|+.+...  .   +.........|..+-|+...++..+.+  ..+++.+.+.+..
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~--k---~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~   80 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDGYKIFSCSPFE--K---CFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTT   80 (391)
T ss_pred             cceeeeeeccceeEEEccCCCceeEEecCchH--H---hhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCce
Confidence            445666677  566777777788899887732  1   211133456778888888875544433  4588888876654


Q ss_pred             cccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEee---cc
Q 013717          175 HKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIK---AH  251 (437)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~  251 (437)
                      +..+.                               ...+|.++.++.+.|+++-.+. |+|||+++.+.++++.   .+
T Consensus        81 ICe~~-------------------------------fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n  128 (391)
T KOG2110|consen   81 ICEIF-------------------------------FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPN  128 (391)
T ss_pred             EEEEe-------------------------------cCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCC
Confidence            44332                               5568999999997777776655 9999999999998886   34


Q ss_pred             cccEEEEEEecCCe-EEEE--eCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCc-EEEEECC
Q 013717          252 EDAVNAVAVSAGGT-VYTG--SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRS-ILVWDRE  327 (437)
Q Consensus       252 ~~~v~~~~~~~~~~-l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~  327 (437)
                      ...+.++.+++.+. ++.-  ...|.|.+||...-    +....+..|.+.+.+++|+++|.+||+++..|+ |+||.+.
T Consensus       129 ~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl----~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~  204 (391)
T KOG2110|consen  129 PKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL----QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP  204 (391)
T ss_pred             ccceEeeccCCCCceEEecCCCCCceEEEEEcccc----eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcC
Confidence            45577777776655 5442  34699999977543    467788899999999999999999999999987 5899999


Q ss_pred             CCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCC
Q 013717          328 DSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~  372 (437)
                      +++....+.+...  ...|.+++|+++  +|++.+..++|.||.++.
T Consensus       205 ~G~kl~eFRRG~~--~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  205 EGQKLYEFRRGTY--PVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             CccEeeeeeCCce--eeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            8886666544322  456777887765  999999999999998765

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.79  E-value=6.3e-16  Score=138.43  Aligned_cols=273  Identities=10%  Similarity=0.163  Sum_probs=166.4

Q ss_pred             EEEE-ecC-eEEEEeCCC-CceeeeeccccCCCCcccEEEEEEeCCe--EEEE-ecCCeEEEEeCCCCcccccccccCcc
Q 013717          111 LYAA-SSH-EINVYDRTG-TTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTA-HQDCKIRVWQLTPTKHHKLKTTLPTV  184 (437)
Q Consensus       111 l~s~-~~d-~v~vwd~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~  184 (437)
                      ++++ ..+ .|.+||+.+ ++...+..+    .+.+....+++++++  |+++ ..++.|.+|+++...........   
T Consensus         4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~----~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~---   76 (330)
T PRK11028          4 VYIASPESQQIHVWNLNHEGALTLLQVV----DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES---   76 (330)
T ss_pred             EEEEcCCCCCEEEEEECCCCceeeeeEE----ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee---
Confidence            3444 456 999999964 444555554    234567788999765  5444 45889999999732111111111   


Q ss_pred             ccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE-CCCcEEEEECCCc----ceEEEeecccccEEE
Q 013717          185 NDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS-WDKSLKIWRASDL----RCLESIKAHEDAVNA  257 (437)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~----~~~~~~~~~~~~v~~  257 (437)
                                               ........+++++  +++++++ .++.|.+|++.+.    +.+..+. +......
T Consensus        77 -------------------------~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~  130 (330)
T PRK11028         77 -------------------------PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHS  130 (330)
T ss_pred             -------------------------cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccE
Confidence                                     1222456788887  6666665 4899999999642    2223222 2345677


Q ss_pred             EEEecCCe-E-EEEeCCCeEEEecCCCCcccce---eeEEeeCccccEEEEEEccCCCEEEEEeC-CCcEEEEECCCCcc
Q 013717          258 VAVSAGGT-V-YTGSADRKIRVWAKPFNEKRHA---LIATLEKHKSAVNALALSDDGTVLFSGAC-DRSILVWDREDSAN  331 (437)
Q Consensus       258 ~~~~~~~~-l-~~~~~dg~v~iwd~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~  331 (437)
                      ++++|+++ + ++...++.|.+||+........   ...... .......++|+|+|++++++.. ++.|.+|++.....
T Consensus       131 ~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~  209 (330)
T PRK11028        131 ANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG  209 (330)
T ss_pred             eEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC
Confidence            88999998 4 5556679999999875321100   001111 2345678999999999988876 89999999974322


Q ss_pred             ceEEeeeeccc------ccce--EEEEeeCCEEEEEeC-CCcEEEeeCCCCC-CeeeeeeecCCCCCeeEEEEEccCCCC
Q 013717          332 HMVVTGALRGH------GKAI--LCLINVAGLLMSGSA-DRTVRIWQRGSDG-RFGCLAVLEGHTKPVKSLTAVTEEGQN  401 (437)
Q Consensus       332 ~~~~~~~~~~~------~~~i--~~~~~~~~~l~~~~~-dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~  401 (437)
                      .......+..+      ....  ..+.+++++++++.. ++.|.+|++.... ....+..... ......+.++|++.. 
T Consensus       210 ~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~-  287 (330)
T PRK11028        210 EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKY-  287 (330)
T ss_pred             CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCE-
Confidence            22222222111      1122  234455567777754 7899999996543 2222332222 124567899998852 


Q ss_pred             ceEEEEEecCCCcEEEEeecc
Q 013717          402 GVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       402 ~~~~l~s~~~dg~i~iw~~~~  422 (437)
                         ++++...+++|.+|+++.
T Consensus       288 ---l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        288 ---LIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             ---EEEEEccCCcEEEEEEcC
Confidence               444455589999999863

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=4.5e-17  Score=152.30  Aligned_cols=283  Identities=17%  Similarity=0.223  Sum_probs=198.1

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeeeec---CccCCeEEEEee----CCEEEEEecC-eEEEEeCCCC---c
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL---GHKLPIGCIAVH----HNFLYAASSH-EINVYDRTGT---T  128 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~---~h~~~V~~l~~~----~~~l~s~~~d-~v~vwd~~~~---~  128 (437)
                      ..+.|+|-.+.+++....-.|.+|+.+........-   .-...|+.+.+-    ..+|.+|+.| .|+||+--..   +
T Consensus      1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~ 1147 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKK 1147 (1387)
T ss_pred             ceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCC
Confidence            467888999999988888899999998765543333   235679999886    5789999999 9999975432   2


Q ss_pred             eeeeeccccCCCCc----ccEEEEEEe--CCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEee
Q 013717          129 WTSINTFNDNDSSS----GSVKSVTFC--DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRR  202 (437)
Q Consensus       129 ~~~~~~~~~~~~h~----~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (437)
                      .+.+..+..+.++.    +.=.-+.|.  .+.|+++|.-..|+|||....+....+.                       
T Consensus      1148 ~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP----------------------- 1204 (1387)
T KOG1517|consen 1148 PELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP----------------------- 1204 (1387)
T ss_pred             ceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecc-----------------------
Confidence            33333333322221    111233454  3447777778999999998765443332                       


Q ss_pred             ccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcc---eEEEeeccccc--EEEEEEecCCe--EEEEeCC
Q 013717          203 HKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLR---CLESIKAHEDA--VNAVAVSAGGT--VYTGSAD  272 (437)
Q Consensus       203 ~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~--v~~~~~~~~~~--l~~~~~d  272 (437)
                            .+.+..|+++.-+-   +.+++|..||.|++||.+...   .+...+.|...  |..+.+.+.|.  |++|+.+
T Consensus      1205 ------~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1205 ------YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD 1278 (1387)
T ss_pred             ------cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccC
Confidence                  23555677776543   899999999999999987543   45666778777  99999998776  9999999


Q ss_pred             CeEEEecCCCCcccceeeEEee--CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEe-ee-ecccccceEE
Q 013717          273 RKIRVWAKPFNEKRHALIATLE--KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVT-GA-LRGHGKAILC  348 (437)
Q Consensus       273 g~v~iwd~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~-~~~~~~~i~~  348 (437)
                      |.|++||++..... .......  ...+..+++..+++...+++|+. +.|+||++.......... .. .....+.+.|
T Consensus      1279 G~I~~~DlR~~~~e-~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~sc 1356 (1387)
T KOG1517|consen 1279 GDIQLLDLRMSSKE-TFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSC 1356 (1387)
T ss_pred             CeEEEEecccCccc-ccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcce
Confidence            99999999874221 1111111  12346999999999999999988 999999987543221110 01 1123455689


Q ss_pred             EEeeCC--EEEEEeCCCcEEEeeCCCC
Q 013717          349 LINVAG--LLMSGSADRTVRIWQRGSD  373 (437)
Q Consensus       349 ~~~~~~--~l~~~~~dg~i~iwd~~~~  373 (437)
                      +.|++.  ++|+|+.|.+|.||.....
T Consensus      1357 L~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1357 LAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             eeecchhHhhhhccCCceEEEeecCCc
Confidence            999987  8899999999999987754

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=9.4e-18  Score=137.83  Aligned_cols=196  Identities=15%  Similarity=0.231  Sum_probs=156.8

Q ss_pred             CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecC-C-e-EEEEeCCCeEEEecCCCCcccceeeEEeeCcc-c
Q 013717          223 GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAG-G-T-VYTGSADRKIRVWAKPFNEKRHALIATLEKHK-S  298 (437)
Q Consensus       223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~-~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~  298 (437)
                      ..++++...|.|++||..+++.+..++++...++.++|..+ + . +.+++.||+|++||++...+.  ....+..+. .
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~--a~~~~~~~~~~  118 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES--ARISWTQQSGT  118 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh--hheeccCCCCC
Confidence            56888999999999999999999999999999999999864 3 3 999999999999999876543  233344444 5


Q ss_pred             cEEEEEEccCCCEEEEEeC----CCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCC
Q 013717          299 AVNALALSDDGTVLFSGAC----DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRG  371 (437)
Q Consensus       299 ~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~  371 (437)
                      +..+++..-.++.+++|..    +-.|.+||++..+...  ..-...|...|+++.|++.   +|++|+.||.|.+||++
T Consensus       119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l--~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~  196 (376)
T KOG1188|consen  119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLL--RQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK  196 (376)
T ss_pred             cceEeeccCcCCeEEeccccccCceEEEEEEeccccchh--hhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence            6677777767788888864    6789999999866532  2224679999999999865   99999999999999998


Q ss_pred             CCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCC
Q 013717          372 SDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPN  426 (437)
Q Consensus       372 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  426 (437)
                      ....-..+...-.|...|..+.|..++-.    .|.+-+.+++..+|+++.+.+.
T Consensus       197 ~d~EeDaL~~viN~~sSI~~igw~~~~yk----rI~clTH~Etf~~~ele~~~~~  247 (376)
T KOG1188|consen  197 KDNEEDALLHVINHGSSIHLIGWLSKKYK----RIMCLTHMETFAIYELEDGSEE  247 (376)
T ss_pred             CCcchhhHHHhhcccceeeeeeeecCCcc----eEEEEEccCceeEEEccCCChh
Confidence            76544444444558888999999988754    5888899999999999988753

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.78  E-value=5.2e-17  Score=141.19  Aligned_cols=216  Identities=16%  Similarity=0.173  Sum_probs=150.5

Q ss_pred             eEEEEee--CCEEEEEecCeEEEEeCCCC--ceeeeeccccCCCCcccEEEEEEe-----CCe--EEEEecCCeEEEEeC
Q 013717          101 IGCIAVH--HNFLYAASSHEINVYDRTGT--TWTSINTFNDNDSSSGSVKSVTFC-----DGK--IFTAHQDCKIRVWQL  169 (437)
Q Consensus       101 V~~l~~~--~~~l~s~~~d~v~vwd~~~~--~~~~~~~~~~~~~h~~~v~~l~~~-----~~~--l~s~~~dg~i~iwd~  169 (437)
                      +....++  |++|+-.-.+.+.+|+...+  ..+.+...   .-......|-+|.     ++.  ++.|-.-|.|.+.|.
T Consensus       126 ~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~---~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp  202 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKR---EYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDP  202 (636)
T ss_pred             eeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhh---cccCCCCceecccccccCCCCcceEEeeccCceEEecc
Confidence            4444455  77777766668888888743  11122111   1122334444453     232  888888899998887


Q ss_pred             CCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCC-----
Q 013717          170 TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASD-----  241 (437)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~-----  241 (437)
                      ...+..+.+....                          .-....|+|+.|-+   ..++++-.+|.+.+||..-     
T Consensus       203 ~~~~~sklfne~r--------------------------~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t  256 (636)
T KOG2394|consen  203 INFEVSKLFNEER--------------------------LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGAT  256 (636)
T ss_pred             hhhHHHHhhhhcc--------------------------cccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCC
Confidence            6533222221100                          01347899999977   7888888999999997631     


Q ss_pred             ---------c--------------ceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCcc
Q 013717          242 ---------L--------------RCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHK  297 (437)
Q Consensus       242 ---------~--------------~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  297 (437)
                               +              .++..+....+.|+.++|+|||+ ||+.+.||.++|||....    +++..++..-
T Consensus       257 ~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~----eLlg~mkSYF  332 (636)
T KOG2394|consen  257 APSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ----ELLGVMKSYF  332 (636)
T ss_pred             CCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH----HHHHHHHhhc
Confidence                     0              11222333456899999999999 999999999999987643    3455555566


Q ss_pred             ccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC
Q 013717          298 SAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA  353 (437)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~  353 (437)
                      +...|++|+|||+||++|++|.-|.||.+...+    +...-++|..+|..++|++
T Consensus       333 GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR----VVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  333 GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR----VVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             cceEEEEEcCCccEEEecCCcceEEEEEeccce----EEEeccccccceeeEeecc
Confidence            889999999999999999999999999997554    6666789999999999997

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.78  E-value=4.6e-19  Score=161.39  Aligned_cols=240  Identities=20%  Similarity=0.328  Sum_probs=188.9

Q ss_pred             CCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcE
Q 013717          138 NDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV  215 (437)
Q Consensus       138 ~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  215 (437)
                      +.+|..+|.|..|.-.+  +++|+.|..++||..++..+.....                              ||.+.|
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r------------------------------Ghs~di  235 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR------------------------------GHSGDI  235 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC------------------------------CCcccc
Confidence            37899999999998433  9999999999999988876554443                              799999


Q ss_pred             EEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEe
Q 013717          216 TGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATL  293 (437)
Q Consensus       216 ~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  293 (437)
                      +.++.+.  -++++++.|..|++|.+.++.++..+.+|.+.|++++|+|-.   +.+.||++++||.+.......+...-
T Consensus       236 tdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~  312 (1113)
T KOG0644|consen  236 TDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLK  312 (1113)
T ss_pred             chhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCC
Confidence            9999977  778899999999999999999999999999999999999864   77889999999987322111110000


Q ss_pred             eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee---CCEEEEEeCCCcEEEeeC
Q 013717          294 EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV---AGLLMSGSADRTVRIWQR  370 (437)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~iwd~  370 (437)
                      .....-+.++.|..++..+++++.|+.-..|.+.....          +...+.-....   ..+.+++-.+-.+++|++
T Consensus       313 ~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~----------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl  382 (1113)
T KOG0644|consen  313 FTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW----------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNL  382 (1113)
T ss_pred             cccccceeeeeccccccccccccCCcccccchhhHhhh----------hccceEEEeccccccccceeeeeeeEeeeeec
Confidence            11235577788888899999999999999998753211          11111111111   136677777889999999


Q ss_pred             CCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCC
Q 013717          371 GSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNS  427 (437)
Q Consensus       371 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  427 (437)
                      .++.   +...+.+|...+..+.++|-++.    ...+++.||...|||+-.+.|..
T Consensus       383 ~~g~---l~H~l~ghsd~~yvLd~Hpfn~r----i~msag~dgst~iwdi~eg~pik  432 (1113)
T KOG0644|consen  383 YTGQ---LLHNLMGHSDEVYVLDVHPFNPR----IAMSAGYDGSTIIWDIWEGIPIK  432 (1113)
T ss_pred             ccch---hhhhhcccccceeeeeecCCCcH----hhhhccCCCceEeeecccCCcce
Confidence            9877   78889999999999999998874    88999999999999999887754

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.77  E-value=1.6e-16  Score=133.52  Aligned_cols=276  Identities=15%  Similarity=0.183  Sum_probs=191.2

Q ss_pred             ccceeeccccc-cccccCCCceeEEecCCC--------cceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCC
Q 013717           59 NLSLQTLPSVP-SLQKLSPDETINFSSASH--------LCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRT  125 (437)
Q Consensus        59 ~~~~~~~~~~~-~~~s~s~dg~i~~~~~~~--------~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~  125 (437)
                      ..++.|++... .+++++.|..|++|....        .-.....| .|...|+++.|+  |++||+|+++ .|.+|...
T Consensus        16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~   95 (434)
T KOG1009|consen   16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQG   95 (434)
T ss_pred             eEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEec
Confidence            34667777666 899999999999999822        12334455 899999999999  8899999999 99999877


Q ss_pred             --------C------CceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCcccccee
Q 013717          126 --------G------TTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLL  189 (437)
Q Consensus       126 --------~------~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  189 (437)
                              +      ..+...+.+   .+|...|..++|+++.  +++++.|..+++||+..++......          
T Consensus        96 ~~~~~~~d~e~~~~ke~w~v~k~l---r~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~----------  162 (434)
T KOG1009|consen   96 DVRIFDADTEADLNKEKWVVKKVL---RGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD----------  162 (434)
T ss_pred             CcCCccccchhhhCccceEEEEEe---cccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc----------
Confidence                    1      223333443   6799999999999776  9999999999999999987555443          


Q ss_pred             eecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee--------c---------
Q 013717          190 RFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK--------A---------  250 (437)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~---------  250 (437)
                                          +|...+..++|+|  .++++-+.|...+.+.+...+.+....        .         
T Consensus       163 --------------------dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~r  222 (434)
T KOG1009|consen  163 --------------------DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTR  222 (434)
T ss_pred             --------------------ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceee
Confidence                                6999999999999  888888888877777765443322211        0         


Q ss_pred             --cc----ccEEEEEEecCCe-EEEEeC----CCe-----EEEecCCCCcccceeeEEeeCccccEEEEEEcc-------
Q 013717          251 --HE----DAVNAVAVSAGGT-VYTGSA----DRK-----IRVWAKPFNEKRHALIATLEKHKSAVNALALSD-------  307 (437)
Q Consensus       251 --~~----~~v~~~~~~~~~~-l~~~~~----dg~-----v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------  307 (437)
                        |.    .-..-++|+|+|. +++...    .+.     .++|+-   .....+...+.....+...+.|+|       
T Consensus       223 LfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsr---k~l~rP~~~lp~~~k~~lavr~~pVy~elrp  299 (434)
T KOG1009|consen  223 LFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSR---KDLKRPAARLPSPKKPALAVRFSPVYYELRP  299 (434)
T ss_pred             eeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecc---ccccCceeecCCCCcceEEEEeeeeEEEecc
Confidence              11    1234567888888 555432    222     234432   122233444444455555566555       


Q ss_pred             -----------CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCC
Q 013717          308 -----------DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       308 -----------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~  374 (437)
                                 -+-.++.++ ...|++||.+.........   .-|-..++.++|+++  .++..+.||...+--++..+
T Consensus       300 ~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~---nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e  375 (434)
T KOG1009|consen  300 LSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVD---NIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE  375 (434)
T ss_pred             ccccccccccccceEEEEee-cceEEEeccccccceEEEe---eeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence                       122345554 4579999998765443332   337788888888866  99999999988877766544

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.77  E-value=1.1e-16  Score=142.77  Aligned_cols=259  Identities=12%  Similarity=0.163  Sum_probs=193.3

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTF  135 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~  135 (437)
                      ..+.|.|....+. +..+..+.++|.+.. .+.+++ ||.+.|+|++|+  |+.+|+|+.| .|.+|+.+-   +-+..+
T Consensus        16 ~d~afkPDGsqL~-lAAg~rlliyD~ndG-~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~LkY   90 (1081)
T KOG1538|consen   16 NDIAFKPDGTQLI-LAAGSRLLVYDTSDG-TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILKY   90 (1081)
T ss_pred             heeEECCCCceEE-EecCCEEEEEeCCCc-ccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cceeee
Confidence            4578888888776 444567888888764 455666 999999999999  9999999999 999999765   222232


Q ss_pred             ccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717          136 NDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD  213 (437)
Q Consensus       136 ~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (437)
                          .|...|.|+.|+|=.  |++++-. ..-+|..+.....+.                                ....
T Consensus        91 ----SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~--------------------------------kss~  133 (1081)
T KOG1538|consen   91 ----SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH--------------------------------KSSS  133 (1081)
T ss_pred             ----ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh--------------------------------hhhe
Confidence                599999999999754  7777653 577898765432211                                1445


Q ss_pred             cEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee---cccccEEEEEEecCC-----e-EEEEeCCCeEEEecCCC
Q 013717          214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK---AHEDAVNAVAVSAGG-----T-VYTGSADRKIRVWAKPF  282 (437)
Q Consensus       214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~-----~-l~~~~~dg~v~iwd~~~  282 (437)
                      .|.+++|..  .+++.|-.+|+|.|-+- +++....+.   +.+.+|++++|+|..     . +++.....++.+|.+..
T Consensus       134 R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG  212 (1081)
T KOG1538|consen  134 RIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG  212 (1081)
T ss_pred             eEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc
Confidence            788889977  89999999999999875 444444443   467899999999853     2 77888888888887653


Q ss_pred             CcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC--CEEEEEe
Q 013717          283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLLMSGS  360 (437)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~  360 (437)
                           +.+..-+...-...|+.+.++|.+++.|+.|+.+++|--+.     ...+.......+|+.+...|  +.++.|.
T Consensus       213 -----~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G-----vrLGTvg~~D~WIWtV~~~PNsQ~v~~GC  282 (1081)
T KOG1538|consen  213 -----KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG-----VRLGTVGEQDSWIWTVQAKPNSQYVVVGC  282 (1081)
T ss_pred             -----eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC-----eEEeeccccceeEEEEEEccCCceEEEEE
Confidence                 23333333445678999999999999999999999997432     24444555667777776554  5999999


Q ss_pred             CCCcEEEeeCC
Q 013717          361 ADRTVRIWQRG  371 (437)
Q Consensus       361 ~dg~i~iwd~~  371 (437)
                      .||+|..|++-
T Consensus       283 qDGTiACyNl~  293 (1081)
T KOG1538|consen  283 QDGTIACYNLI  293 (1081)
T ss_pred             ccCeeehhhhH
Confidence            99999999864

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.76  E-value=4.9e-15  Score=132.68  Aligned_cols=269  Identities=10%  Similarity=0.125  Sum_probs=168.4

Q ss_pred             cccCCCceeEEecCCCcc--eeeeecCccCCeEEEEee--CCEEEEEec-C-eEEEEeCC-CCceeeeeccccCCCCccc
Q 013717           72 QKLSPDETINFSSASHLC--INSVQLGHKLPIGCIAVH--HNFLYAASS-H-EINVYDRT-GTTWTSINTFNDNDSSSGS  144 (437)
Q Consensus        72 ~s~s~dg~i~~~~~~~~~--~~~~~~~h~~~V~~l~~~--~~~l~s~~~-d-~v~vwd~~-~~~~~~~~~~~~~~~h~~~  144 (437)
                      ++-..++.|.+|+.....  ..+..+.+.+....++++  +++|++++. + .|.+|+++ ++.+......    ...+.
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~----~~~~~   81 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES----PLPGS   81 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee----cCCCC
Confidence            334668999999996433  344555555677888888  788877764 4 99999997 3334333332    13345


Q ss_pred             EEEEEEeCCe--EEEEe-cCCeEEEEeCCCCccc-ccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe
Q 013717          145 VKSVTFCDGK--IFTAH-QDCKIRVWQLTPTKHH-KLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV  220 (437)
Q Consensus       145 v~~l~~~~~~--l~s~~-~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  220 (437)
                      ...+++++++  +++++ .++.|.+|++++.... ......                            .+.....++++
T Consensus        82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~----------------------------~~~~~~~~~~~  133 (330)
T PRK11028         82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII----------------------------EGLEGCHSANI  133 (330)
T ss_pred             ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec----------------------------cCCCcccEeEe
Confidence            6789999665  55554 4899999999743211 111110                            12234566778


Q ss_pred             CC--CeEEEE-ECCCcEEEEECCCcceEEE-----ee-cccccEEEEEEecCCe-EEEEeC-CCeEEEecCCCCccccee
Q 013717          221 NN--GLIYSV-SWDKSLKIWRASDLRCLES-----IK-AHEDAVNAVAVSAGGT-VYTGSA-DRKIRVWAKPFNEKRHAL  289 (437)
Q Consensus       221 ~~--~~l~~~-~~dg~i~iwd~~~~~~~~~-----~~-~~~~~v~~~~~~~~~~-l~~~~~-dg~v~iwd~~~~~~~~~~  289 (437)
                      +|  ++++++ ..++.|.+||+.+...+..     .. ........++|+|+++ ++++.. ++.|.+||++......+.
T Consensus       134 ~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~  213 (330)
T PRK11028        134 DPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC  213 (330)
T ss_pred             CCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence            87  566544 4569999999976432211     11 1234467899999998 656655 899999998743222233


Q ss_pred             eEEeeCc------cccEEEEEEccCCCEEEEEeC-CCcEEEEECCCCccceEEeeeec-ccccceEEEEeeCCEEEEEeC
Q 013717          290 IATLEKH------KSAVNALALSDDGTVLFSGAC-DRSILVWDREDSANHMVVTGALR-GHGKAILCLINVAGLLMSGSA  361 (437)
Q Consensus       290 ~~~~~~~------~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~l~~~~~  361 (437)
                      +..+...      ......+.++|+|++++++.. ++.|.+|++........+..... +....-..+..++++|+++..
T Consensus       214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~  293 (330)
T PRK11028        214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ  293 (330)
T ss_pred             EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc
Confidence            3333221      122346899999999998865 78999999965443333333322 112223455566777777665


Q ss_pred             -CCcEEEeeCCC
Q 013717          362 -DRTVRIWQRGS  372 (437)
Q Consensus       362 -dg~i~iwd~~~  372 (437)
                       +++|.+|++..
T Consensus       294 ~~~~v~v~~~~~  305 (330)
T PRK11028        294 KSHHISVYEIDG  305 (330)
T ss_pred             cCCcEEEEEEcC
Confidence             89999998863

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=3.6e-15  Score=137.38  Aligned_cols=334  Identities=12%  Similarity=0.133  Sum_probs=225.9

Q ss_pred             ceeeccccccccccCCCceeEEecCCC---cceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeee
Q 013717           61 SLQTLPSVPSLQKLSPDETINFSSASH---LCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSIN  133 (437)
Q Consensus        61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~---~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~  133 (437)
                      ...++|....++++-.||.|.+|..-.   .....+.+ =|.+.|.+++|+  |.+|.+|+.. .+.+|.+.+++.+.+.
T Consensus       210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLP  289 (792)
T KOG1963|consen  210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLP  289 (792)
T ss_pred             eEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccccc
Confidence            468899999999999999999998733   23334444 789999999999  9999999999 9999999998755555


Q ss_pred             ccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717          134 TFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH  211 (437)
Q Consensus       134 ~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (437)
                      .      -.++|..+.++|+.  .+....|..|.+....+......+..+.......                   -...
T Consensus       290 R------Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~-------------------k~~~  344 (792)
T KOG1963|consen  290 R------LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPST-------------------KTRP  344 (792)
T ss_pred             c------cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccc-------------------cccc
Confidence            4      46899999999776  6677789999999887665544444332110000                   0123


Q ss_pred             CCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee-----------cccccEEEEEEecCCe-EEEEe-------
Q 013717          212 GDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK-----------AHEDAVNAVAVSAGGT-VYTGS-------  270 (437)
Q Consensus       212 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~-l~~~~-------  270 (437)
                      .+-.+.++++|  +.++..+..|.|.+||+.+.+.+..+.           .+...+++++.+-.|. ++++-       
T Consensus       345 ~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~  424 (792)
T KOG1963|consen  345 QSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFN  424 (792)
T ss_pred             cccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhh
Confidence            44556778888  888888999999999998887776654           1123466777776776 55542       


Q ss_pred             -C--CCeEEEecCCCCcccceeeEEe-eCccccEEEEEEcc-C-CCEEEEEeCCCcEEEEECCC------CccceEEeee
Q 013717          271 -A--DRKIRVWAKPFNEKRHALIATL-EKHKSAVNALALSD-D-GTVLFSGACDRSILVWDRED------SANHMVVTGA  338 (437)
Q Consensus       271 -~--dg~v~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~-~-~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~  338 (437)
                       .  .-.+++|-...+...+.+...+ ..|...+...++.+ . ...+++++.||.++||-+.+      ....+.+...
T Consensus       425 ~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i  504 (792)
T KOG1963|consen  425 FFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI  504 (792)
T ss_pred             ccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeee
Confidence             2  3457889776666655555444 35776666666654 2 33899999999999999843      2333333333


Q ss_pred             ecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEE
Q 013717          339 LRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRA  417 (437)
Q Consensus       339 ~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  417 (437)
                      -..|..++.+..|+++ -+++.+.|++|.+||..+...  +......-..++..+.+......   ...+.....+.+.+
T Consensus       505 ~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~  579 (792)
T KOG1963|consen  505 GSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNE--LLCTEGSRNWPIAELLFTAQTQN---DGALVHATQQRLSV  579 (792)
T ss_pred             eccccCcccchhhcCCCcEEEEecCCEEEEecCCChhh--hhccccccccchHhHhhhccccc---ccceeeccCceEeh
Confidence            3347778888888765 677788888999999988431  22222222333444333321110   12344445678888


Q ss_pred             EeeccCC
Q 013717          418 WQVSVSC  424 (437)
Q Consensus       418 w~~~~~~  424 (437)
                      |++-...
T Consensus       580 WNll~~~  586 (792)
T KOG1963|consen  580 WNLLSMS  586 (792)
T ss_pred             Hhhhhhh
Confidence            8876654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.73  E-value=3.8e-16  Score=135.89  Aligned_cols=260  Identities=13%  Similarity=0.153  Sum_probs=173.2

Q ss_pred             CccCCeEEEEee--CCEEEEEecCe-EEEEeCCCCceeeeeccccCCCCcccEEEEEEe----CCeEEEEecCCeEEEEe
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSHE-INVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC----DGKIFTAHQDCKIRVWQ  168 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~~~dg~i~iwd  168 (437)
                      .|...|.|+.|.  ...+.+++++. +.-||+.....+.......+-.....+....--    .+.++.++.||.+.+.+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~   91 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN   91 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence            577778899998  44455555554 444555443222221110000000001111111    12289999999999987


Q ss_pred             CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEE
Q 013717          169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLE  246 (437)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~  246 (437)
                      -.. +..+.+                              ..|.+.+.+-.|++  .-|+++++||.|++|. ++|....
T Consensus        92 k~~-rVE~sv------------------------------~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRS  139 (737)
T KOG1524|consen   92 KSA-RVERSI------------------------------SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRS  139 (737)
T ss_pred             ccc-hhhhhh------------------------------hhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHH
Confidence            542 222211                              25999999999998  7899999999999998 4665555


Q ss_pred             EeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717          247 SIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD  325 (437)
Q Consensus       247 ~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (437)
                      ++.....+|.|++|.|+.. ++. +..+.+.|=-+..+    ..+..++.|.+-|.++.|++..+++++|++|-..+|||
T Consensus       140 tl~Q~~~~v~c~~W~p~S~~vl~-c~g~h~~IKpL~~n----~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD  214 (737)
T KOG1524|consen  140 TVVQNEESIRCARWAPNSNSIVF-CQGGHISIKPLAAN----SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWD  214 (737)
T ss_pred             HHhhcCceeEEEEECCCCCceEE-ecCCeEEEeecccc----cceeEEeccCcEEEEeecCccccceeecCCceeEEeec
Confidence            5656778999999999988 433 34456666544333    24557889999999999999999999999999999999


Q ss_pred             CCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceE
Q 013717          326 REDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVV  404 (437)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~  404 (437)
                      -...     .......|..+|++++|+++ .++.++. +++|              .-....+.|..++|++|+.+    
T Consensus       215 ~~G~-----~Lf~S~~~ey~ITSva~npd~~~~v~S~-nt~R--------------~~~p~~GSifnlsWS~DGTQ----  270 (737)
T KOG1524|consen  215 AQGA-----NLFTSAAEEYAITSVAFNPEKDYLLWSY-NTAR--------------FSSPRVGSIFNLSWSADGTQ----  270 (737)
T ss_pred             ccCc-----ccccCChhccceeeeeeccccceeeeee-eeee--------------ecCCCccceEEEEEcCCCce----
Confidence            7532     22234568899999999988 4444433 2343              11234678999999999964    


Q ss_pred             EEEEecCCCcEEE
Q 013717          405 SVFSGSLDGEIRA  417 (437)
Q Consensus       405 ~l~s~~~dg~i~i  417 (437)
                       ++.|...|.+.+
T Consensus       271 -~a~gt~~G~v~~  282 (737)
T KOG1524|consen  271 -ATCGTSTGQLIV  282 (737)
T ss_pred             -eeccccCceEEE
Confidence             777777777654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.72  E-value=1.1e-15  Score=128.01  Aligned_cols=266  Identities=15%  Similarity=0.175  Sum_probs=189.0

Q ss_pred             CccCCeEEEEee----CCEEEEEecC-eEEEEeCCCCceeeee-ccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeC
Q 013717           96 GHKLPIGCIAVH----HNFLYAASSH-EINVYDRTGTTWTSIN-TFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQL  169 (437)
Q Consensus        96 ~h~~~V~~l~~~----~~~l~s~~~d-~v~vwd~~~~~~~~~~-~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~  169 (437)
                      .....|.+++|.    .+.|...+.+ .+..+.+......... .+.......++|..++..++.|++|-.+|.+.+|..
T Consensus        53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~  132 (412)
T KOG3881|consen   53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHD  132 (412)
T ss_pred             chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEec
Confidence            556778888887    4566666566 7777777664222211 111113467889999999999999999999999999


Q ss_pred             CCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECC--CcEEEEECCCcce
Q 013717          170 TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWD--KSLKIWRASDLRC  244 (437)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~d--g~i~iwd~~~~~~  244 (437)
                      ..+......                           .+.......+..+.-.+   ..+++|+..  ..+.|||+++.+.
T Consensus       133 k~~d~hss~---------------------------l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q  185 (412)
T KOG3881|consen  133 KSGDLHSSK---------------------------LIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ  185 (412)
T ss_pred             cCCcccccc---------------------------ceeeecCCceeeeccCCCCCceEecCchhcccceeeeeccccee
Confidence            865421000                           00011223444554444   677789998  8999999998866


Q ss_pred             EEEeecc---------cccEEEEEEecC--Ce-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEE
Q 013717          245 LESIKAH---------EDAVNAVAVSAG--GT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVL  312 (437)
Q Consensus       245 ~~~~~~~---------~~~v~~~~~~~~--~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  312 (437)
                      +..-+.-         .-.++++.|-+.  .. |++++.-+.|++||.+...   .++..+.-...+++++...|+|+++
T Consensus       186 iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR---RPV~~fd~~E~~is~~~l~p~gn~I  262 (412)
T KOG3881|consen  186 IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR---RPVAQFDFLENPISSTGLTPSGNFI  262 (412)
T ss_pred             eeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC---cceeEeccccCcceeeeecCCCcEE
Confidence            5554321         224667788766  44 9999999999999987443   5677777778999999999999999


Q ss_pred             EEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCee
Q 013717          313 FSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVK  390 (437)
Q Consensus       313 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  390 (437)
                      ++|..-|.+..||++.++..   ...+.+..+.+.++..++.  ++++++-|..|||+|+.+.+   ++.... -...++
T Consensus       263 y~gn~~g~l~~FD~r~~kl~---g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk---ll~kvY-vKs~lt  335 (412)
T KOG3881|consen  263 YTGNTKGQLAKFDLRGGKLL---GCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK---LLHKVY-VKSRLT  335 (412)
T ss_pred             EEecccchhheecccCceee---ccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch---hhhhhh-hhcccc
Confidence            99999999999999877632   2236777889999988877  99999999999999999855   332221 134566


Q ss_pred             EEEEEccC
Q 013717          391 SLTAVTEE  398 (437)
Q Consensus       391 ~l~~~~~~  398 (437)
                      +|.+.++.
T Consensus       336 ~il~~~~~  343 (412)
T KOG3881|consen  336 FILLRDDV  343 (412)
T ss_pred             EEEecCCc
Confidence            66665543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.72  E-value=2.5e-16  Score=136.97  Aligned_cols=231  Identities=18%  Similarity=0.234  Sum_probs=164.7

Q ss_pred             CCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717          140 SSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL  218 (437)
Q Consensus       140 ~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  218 (437)
                      .|...|.|+.|..+. ++.++.|..+.+|.-.+..........+..-       .+.              .|   +...
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~-------pt~--------------~h---~~~r   67 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFV-------PTD--------------MH---LGGR   67 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccC-------Ccc--------------cc---cccc
Confidence            477788899998665 7777777777777654443333222211100       000              01   1111


Q ss_pred             EeC---C-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEe
Q 013717          219 AVN---N-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATL  293 (437)
Q Consensus       219 ~~~---~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~  293 (437)
                      ...   . ..++.++.||.+.|.+ +.++....+..|.+.+.+-.|+|||. |++++.||.|++|.-..     .+..++
T Consensus        68 s~~~g~~~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-----MLRStl  141 (737)
T KOG1524|consen   68 SSGGGKGSDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-----MLRSTV  141 (737)
T ss_pred             ccCCCCCcceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-----hHHHHH
Confidence            111   1 6788899999999998 46677777889999999999999999 99999999999996431     122333


Q ss_pred             eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCC
Q 013717          294 EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRG  371 (437)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~  371 (437)
                      .....+|.|++|.|+.+-++-+. .+.+.|=.+....    ..-.+++|.+-|.+++|++.  ++++|++|-..+|||..
T Consensus       142 ~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~----k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~  216 (737)
T KOG1524|consen  142 VQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANS----KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ  216 (737)
T ss_pred             hhcCceeEEEEECCCCCceEEec-CCeEEEeeccccc----ceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence            44677899999999887666553 4567776665433    33347889999999999865  99999999999999987


Q ss_pred             CCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEE
Q 013717          372 SDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIR  416 (437)
Q Consensus       372 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  416 (437)
                      .    ..+..-..|..+|++++|.|+.      .++.++. .++|
T Consensus       217 G----~~Lf~S~~~ey~ITSva~npd~------~~~v~S~-nt~R  250 (737)
T KOG1524|consen  217 G----ANLFTSAAEEYAITSVAFNPEK------DYLLWSY-NTAR  250 (737)
T ss_pred             C----cccccCChhccceeeeeecccc------ceeeeee-eeee
Confidence            5    3577778899999999999995      4555554 3555

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=9.2e-16  Score=128.54  Aligned_cols=252  Identities=13%  Similarity=0.156  Sum_probs=176.5

Q ss_pred             CCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717          139 DSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT  216 (437)
Q Consensus       139 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  216 (437)
                      .+|.+.|++|.|+.+.  |++|+.|..+++|+++..-..+..+.+.                 +..      ..|...|.
T Consensus        53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~-----------------~~~------~~H~SNIF  109 (609)
T KOG4227|consen   53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG-----------------VME------HPHRSNIF  109 (609)
T ss_pred             hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce-----------------ecc------CccccceE
Confidence            5799999999999544  9999999999999987432211111110                 000      13678999


Q ss_pred             EEEeCC--CeEEEEECCCcEEEEECCCcceEEEee--cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeE
Q 013717          217 GLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK--AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIA  291 (437)
Q Consensus       217 ~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~  291 (437)
                      |++|+-  .++++|..+++|...|+++.+.+..+.  ...+.|+.+..+|-.. |++.+.++.|.+||.+.......++.
T Consensus       110 ~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~  189 (609)
T KOG4227|consen  110 SLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL  189 (609)
T ss_pred             EEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee
Confidence            999987  899999999999999999998887775  2345899999999766 99999999999999886553333322


Q ss_pred             EeeCccccEEEEEEccC-CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccce---EEE--EeeCCEEEEEeCCCcE
Q 013717          292 TLEKHKSAVNALALSDD-GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI---LCL--INVAGLLMSGSADRTV  365 (437)
Q Consensus       292 ~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i---~~~--~~~~~~l~~~~~dg~i  365 (437)
                       ..........+.|+|. -.+|++.+..+-+-+||.+..........-+.+.....   +..  ..+|+.|++--....-
T Consensus       190 -~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P  268 (609)
T KOG4227|consen  190 -PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCP  268 (609)
T ss_pred             -ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCC
Confidence             2335567889999995 45788888889999999987654332222222222211   233  3445566665555556


Q ss_pred             EEeeCCCCCCeeeeeeecCCC-------CCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          366 RIWQRGSDGRFGCLAVLEGHT-------KPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       366 ~iwd~~~~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      .+||+.+..  ..+..+. |.       ..+.+++|..+.      -+++|+++-.|++|++...
T Consensus       269 ~~~D~~S~R--~~V~k~D-~N~~GY~N~~T~KS~~F~~D~------~v~tGSD~~~i~~WklP~~  324 (609)
T KOG4227|consen  269 LYFDFISQR--CFVLKSD-HNPNGYCNIKTIKSMTFIDDY------TVATGSDHWGIHIWKLPRA  324 (609)
T ss_pred             EEeeeeccc--ceeEecc-CCCCcceeeeeeeeeeeecce------eeeccCcccceEEEecCCC
Confidence            678877633  1222222 22       257888888875      6999999999999998654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.72  E-value=4.5e-17  Score=139.16  Aligned_cols=272  Identities=16%  Similarity=0.170  Sum_probs=197.1

Q ss_pred             EEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCccccc
Q 013717          102 GCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKL  177 (437)
Q Consensus       102 ~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~  177 (437)
                      ..+.|+  |++|+.|+.. .|-.+|+.++.+.+...      -...|..+.|..+. +++......+.|||-...+ +.+
T Consensus       133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~------v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtE-lHC  205 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN------VMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTE-LHC  205 (545)
T ss_pred             eeeeecCCccEEEecCCccceeeeecccceeeeeee------hhhhhhhhhhhcchHHHHhhhhceEEEecCCCcE-Eee
Confidence            456666  8999999888 99999999965544433      35688999998544 7777888999999976443 333


Q ss_pred             ccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccE
Q 013717          178 KTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAV  255 (437)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  255 (437)
                      +.                               ....|..+.|-|  -+|++++..|.++--|+.+|+.+..+....+.+
T Consensus       206 lk-------------------------------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~  254 (545)
T KOG1272|consen  206 LK-------------------------------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRT  254 (545)
T ss_pred             hh-------------------------------hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCcc
Confidence            33                               345788899988  667788889999999999999999998888899


Q ss_pred             EEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceE
Q 013717          256 NAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMV  334 (437)
Q Consensus       256 ~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  334 (437)
                      ..+.-+|-+- +-+|...|+|.+|...    ..+++..+..|.++|.+|++.++|+|+++.+.|..++|||++.......
T Consensus       255 ~vm~qNP~NaVih~GhsnGtVSlWSP~----skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t  330 (545)
T KOG1272|consen  255 DVMKQNPYNAVIHLGHSNGTVSLWSPN----SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHT  330 (545)
T ss_pred             chhhcCCccceEEEcCCCceEEecCCC----CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccce
Confidence            9999999888 8889999999999654    3346666778999999999999999999999999999999987653333


Q ss_pred             EeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCC--CCCeeEEEEEccCCCCceEEEEEecCC
Q 013717          335 VTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGH--TKPVKSLTAVTEEGQNGVVSVFSGSLD  412 (437)
Q Consensus       335 ~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~~~~~l~s~~~d  412 (437)
                      ...     ......++++..-+++.+....|.||.-........-..+..|  .++|..+.|+|-.+     +|-.|-..
T Consensus       331 ~~t-----p~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ED-----vLGIGH~~  400 (545)
T KOG1272|consen  331 YRT-----PHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYED-----VLGIGHAG  400 (545)
T ss_pred             eec-----CCCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHH-----eeeccccC
Confidence            221     2334556666665555666667999953322110111122222  34899999999874     45555555


Q ss_pred             CcEEEEeeccCCC
Q 013717          413 GEIRAWQVSVSCP  425 (437)
Q Consensus       413 g~i~iw~~~~~~~  425 (437)
                      |--.+.=.-.|+|
T Consensus       401 G~tsilVPGsGeP  413 (545)
T KOG1272|consen  401 GITSILVPGSGEP  413 (545)
T ss_pred             CceeEeccCCCCC
Confidence            5444433333443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.70  E-value=1.9e-15  Score=123.39  Aligned_cols=208  Identities=16%  Similarity=0.140  Sum_probs=170.0

Q ss_pred             CCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc---ceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCc
Q 013717          211 HGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL---RCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNE  284 (437)
Q Consensus       211 ~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~  284 (437)
                      -..+|+|.+|++  ..++.+.....|.||.....   +..+++..|...|+.+.|.|... |++++.|..-++|... ..
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~-~~   87 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP-SG   87 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC-CC
Confidence            457899999998  78888888899999988665   46788889999999999999886 9999999999999875 33


Q ss_pred             ccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCC
Q 013717          285 KRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSAD  362 (437)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~d  362 (437)
                      ..++....+..++...+++.|+|.++.|++|+.-..|.||-++....-.+..+.-..+...|++++|+++  +|++|+.|
T Consensus        88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D  167 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD  167 (361)
T ss_pred             CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence            4556666667789999999999999999999999999999998766555555555667889999999987  99999999


Q ss_pred             CcEEEeeCC-----CCC---------Ce-eeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          363 RTVRIWQRG-----SDG---------RF-GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       363 g~i~iwd~~-----~~~---------~~-~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      +..|||..-     ...         ++ .++.++....+.|..+.|+|.++     .|+-.+.|..+.+=|-..+.
T Consensus       168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-----~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-----RLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-----EeeEecCCCceEEeecCCCc
Confidence            999999642     111         01 12333445677899999999986     69999999999999887764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.70  E-value=3.8e-15  Score=141.70  Aligned_cols=265  Identities=14%  Similarity=0.214  Sum_probs=166.4

Q ss_pred             EeCCCCceeeeeccccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCee
Q 013717          122 YDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYV  198 (437)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (437)
                      |+.++   ..+..+   ..|...|..++.+++.   +++|+.||+|++|+...-......                    
T Consensus      1034 W~p~G---~lVAhL---~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s-------------------- 1087 (1431)
T KOG1240|consen 1034 WNPRG---ILVAHL---HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGS-------------------- 1087 (1431)
T ss_pred             CCccc---eEeehh---hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcce--------------------
Confidence            55544   445555   5689999999998433   999999999999998754311100                    


Q ss_pred             EEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc--ce-----EEEee-cccccEEEE-EEecC--Ce
Q 013717          199 TVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL--RC-----LESIK-AHEDAVNAV-AVSAG--GT  265 (437)
Q Consensus       199 ~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~--~~-----~~~~~-~~~~~v~~~-~~~~~--~~  265 (437)
                         ......+......+.++...+  +.+|.++.||.|++.++...  +.     ..... ...+.+.++ ++...  ..
T Consensus      1088 ---~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~ 1164 (1431)
T KOG1240|consen 1088 ---ARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSH 1164 (1431)
T ss_pred             ---eeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccce
Confidence               001112222456677776655  89999999999999998762  11     11111 123334433 33322  22


Q ss_pred             -EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccccc
Q 013717          266 -VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGK  344 (437)
Q Consensus       266 -l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  344 (437)
                       ++.+...+.|..||++.....+...  .....+.|++++.+|.+++++.|+..|.+.+||++-........   .++..
T Consensus      1165 ~lvy~T~~~~iv~~D~r~~~~~w~lk--~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~---~P~~~ 1239 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRHDAWRLK--NQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE---HPARA 1239 (1431)
T ss_pred             eEEEEEeccceEEecchhhhhHHhhh--cCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc---CcccC
Confidence             8888899999999998655444332  23346789999999999999999999999999998654332222   22335


Q ss_pred             ceEEEEee---C--CE-EEEEe-CCCcEEEeeCCCCCCeeeeeeecCC-----------------CCCeeEEEEEccCCC
Q 013717          345 AILCLINV---A--GL-LMSGS-ADRTVRIWQRGSDGRFGCLAVLEGH-----------------TKPVKSLTAVTEEGQ  400 (437)
Q Consensus       345 ~i~~~~~~---~--~~-l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~h-----------------~~~v~~l~~~~~~~~  400 (437)
                      ++..+..+   +  .. +.+++ ..+.|.+|++.++..   ..++...                 ...+..+....... 
T Consensus      1240 ~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~---~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~- 1315 (1431)
T KOG1240|consen 1240 PIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR---QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEK- 1315 (1431)
T ss_pred             CcceEEeeccCCCCceEEEecccCCCceeeeecccCcc---eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccC-
Confidence            55444433   3  23 44444 578899999998762   2222111                 11111121111111 


Q ss_pred             CceEEEEEecCCCcEEEEeeccCCCC
Q 013717          401 NGVVSVFSGSLDGEIRAWQVSVSCPN  426 (437)
Q Consensus       401 ~~~~~l~s~~~dg~i~iw~~~~~~~~  426 (437)
                        +.++++|+.|+.||.||...++..
T Consensus      1316 --~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1316 --NGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             --CceeeecCCccceeeccCCCcccc
Confidence              138999999999999999877643

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=2.5e-16  Score=135.47  Aligned_cols=279  Identities=13%  Similarity=0.159  Sum_probs=205.6

Q ss_pred             ceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee----CCEEEEEecC-eEEEEeCCC-Cceeeee
Q 013717           61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH----HNFLYAASSH-EINVYDRTG-TTWTSIN  133 (437)
Q Consensus        61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~----~~~l~s~~~d-~v~vwd~~~-~~~~~~~  133 (437)
                      .+.|......+++.|.|..+.+|+........... ||...|..-.|-    .+.+++.+.| .|++=.+.. +..+...
T Consensus       147 tV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~  226 (559)
T KOG1334|consen  147 TVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTK  226 (559)
T ss_pred             eeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecce
Confidence            55666677889999999999999998877766666 999999988875    6789999999 999877654 2222233


Q ss_pred             ccccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeec
Q 013717          134 TFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIE  210 (437)
Q Consensus       134 ~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (437)
                      .+   ..|.++|..++.-|+.   |.+++.|+.+.-.|++.......+...                           ..
T Consensus       227 rl---~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr---------------------------~~  276 (559)
T KOG1334|consen  227 RL---APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR---------------------------EA  276 (559)
T ss_pred             ec---ccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee---------------------------cc
Confidence            33   5799999999987654   999999999999998876432222211                           01


Q ss_pred             CCC---cEEEEEeCC---CeEEEEECCCcEEEEECCCcceE------EEee------cccccEEEEEEecCCe-EEEEeC
Q 013717          211 HGD---AVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCL------ESIK------AHEDAVNAVAVSAGGT-VYTGSA  271 (437)
Q Consensus       211 ~~~---~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~------~~~~------~~~~~v~~~~~~~~~~-l~~~~~  271 (437)
                      +..   ....++.+|   .++++|+.|-.+++||.+.....      ..+.      ...-.|++++|+.++. +++...
T Consensus       277 ~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn  356 (559)
T KOG1334|consen  277 DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN  356 (559)
T ss_pred             CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence            222   567888888   79999999999999998653221      2221      2345699999998777 999999


Q ss_pred             CCeEEEecCCCCcc--------cceeeEE-eeCccc--cEEEEEE-ccCCCEEEEEeCCCcEEEEECCCCccceEEeeee
Q 013717          272 DRKIRVWAKPFNEK--------RHALIAT-LEKHKS--AVNALAL-SDDGTVLFSGACDRSILVWDREDSANHMVVTGAL  339 (437)
Q Consensus       272 dg~v~iwd~~~~~~--------~~~~~~~-~~~~~~--~i~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  339 (437)
                      |-.|.+|.-..+..        ....+.. +++|..  .|..+-| -|...|+++|+.-|.|.||+-.+++.    +..+
T Consensus       357 De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei----i~~M  432 (559)
T KOG1334|consen  357 DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI----IRFM  432 (559)
T ss_pred             ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHH----HHHh
Confidence            99999995432221        0122333 667654  4666665 57788999999999999999988763    3334


Q ss_pred             cccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCC
Q 013717          340 RGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSD  373 (437)
Q Consensus       340 ~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~  373 (437)
                      .+....|.|+.+++-  +||+++-|.-|+||--.+.
T Consensus       433 egDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  433 EGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             hcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence            555568899999987  9999999999999986443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=2.1e-14  Score=126.24  Aligned_cols=286  Identities=17%  Similarity=0.217  Sum_probs=199.6

Q ss_pred             eeeeecCccCCeEEEEee--CCEEEEEe-cC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCe
Q 013717           90 INSVQLGHKLPIGCIAVH--HNFLYAAS-SH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCK  163 (437)
Q Consensus        90 ~~~~~~~h~~~V~~l~~~--~~~l~s~~-~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~  163 (437)
                      .+++-|+|...-+.|..+  |+|+.+.+ .. .|++||+..-.++..+.+     ....|.-...+++.  ++.-..|.+
T Consensus        43 eLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl-----Dae~V~feiLsDD~SK~v~L~~DR~  117 (703)
T KOG2321|consen   43 ELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL-----DAEVVDFEILSDDYSKSVFLQNDRT  117 (703)
T ss_pred             HHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc-----cccceeEEEeccchhhheEeecCce
Confidence            345556888888888888  88765555 55 999999998655555544     34566666666765  666667787


Q ss_pred             EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCC
Q 013717          164 IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASD  241 (437)
Q Consensus       164 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~  241 (437)
                      |.+-.-- |......                                -...-.+++++.  .-|+.++....|+-++++.
T Consensus       118 IefHak~-G~hy~~R--------------------------------IP~~GRDm~y~~~scDly~~gsg~evYRlNLEq  164 (703)
T KOG2321|consen  118 IEFHAKY-GRHYRTR--------------------------------IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQ  164 (703)
T ss_pred             eeehhhc-Ceeeeee--------------------------------cCcCCccccccCCCccEEEeecCcceEEEEccc
Confidence            7664322 1100000                                111223455554  4556666677899999999


Q ss_pred             cceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeE--EeeCcc-----ccEEEEEEccCCCEEE
Q 013717          242 LRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIA--TLEKHK-----SAVNALALSDDGTVLF  313 (437)
Q Consensus       242 ~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~-----~~i~~~~~~~~~~~l~  313 (437)
                      |+.+..+....+.++++.+++-.. |++|+.+|.|..||.+.......+-.  ....|.     ..|+++.|+.+|-.++
T Consensus       165 GrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~a  244 (703)
T KOG2321|consen  165 GRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVA  244 (703)
T ss_pred             cccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEE
Confidence            999999988889999999998666 88889999999999875443222211  111222     2499999999999999


Q ss_pred             EEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCee
Q 013717          314 SGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVK  390 (437)
Q Consensus       314 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  390 (437)
                      +|+.+|.|.|||+++.+.....   -++...+|..+.|...   --+.......++|||-.+++   ....+. ....++
T Consensus       245 VGts~G~v~iyDLRa~~pl~~k---dh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk---~~asiE-pt~~lN  317 (703)
T KOG2321|consen  245 VGTSTGSVLIYDLRASKPLLVK---DHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGK---PMASIE-PTSDLN  317 (703)
T ss_pred             eeccCCcEEEEEcccCCceeec---ccCCccceeeecccccCCCceEEecchHHhhhcccccCC---ceeecc-ccCCcC
Confidence            9999999999999987654332   2344667778887533   33334455679999999988   444444 344599


Q ss_pred             EEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          391 SLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       391 ~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      .+++.|+.+     +++++-.++.+..|=+..-.|
T Consensus       318 D~C~~p~sG-----m~f~Ane~~~m~~yyiP~LGP  347 (703)
T KOG2321|consen  318 DFCFVPGSG-----MFFTANESSKMHTYYIPSLGP  347 (703)
T ss_pred             ceeeecCCc-----eEEEecCCCcceeEEccccCC
Confidence            999999886     799999998888887765544

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1.4e-15  Score=128.70  Aligned_cols=197  Identities=21%  Similarity=0.192  Sum_probs=143.8

Q ss_pred             EEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEE
Q 013717          216 TGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIAT  292 (437)
Q Consensus       216 ~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~  292 (437)
                      ..+++++  ..+++|+.||++|||+......+.....|...|.++.|+|||+ |++-+.| ..+||+.+.+.    .+..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~----~~a~  222 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA----ALAR  222 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc----hhhh
Confidence            5666665  8999999999999999888888877888999999999999998 8999999 99999987652    2222


Q ss_pred             e--eCccccEEEEEEccCC---C--EEEEEeCCCcEEEEECCCCccc--eEEeeeecccccceEEEE--eeCCEEEEEeC
Q 013717          293 L--EKHKSAVNALALSDDG---T--VLFSGACDRSILVWDREDSANH--MVVTGALRGHGKAILCLI--NVAGLLMSGSA  361 (437)
Q Consensus       293 ~--~~~~~~i~~~~~~~~~---~--~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~i~~~~--~~~~~l~~~~~  361 (437)
                      .  .........+.|+.|+   .  .++....-+.|+.||+......  ......... ...|.+++  .+|++++.|+.
T Consensus       223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~dGkf~AlGT~  301 (398)
T KOG0771|consen  223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR-FKSISSLAVSDDGKFLALGTM  301 (398)
T ss_pred             cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc-cCcceeEEEcCCCcEEEEecc
Confidence            2  2233456677788776   3  3333334566777776533221  111111122 23455555  45679999999


Q ss_pred             CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          362 DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       362 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      ||.|-|++..+.+  ......+.|...|+.+.|+|+..     ++++.+.|..+.+..+.....
T Consensus       302 dGsVai~~~~~lq--~~~~vk~aH~~~VT~ltF~Pdsr-----~~~svSs~~~~~v~~l~vd~~  358 (398)
T KOG0771|consen  302 DGSVAIYDAKSLQ--RLQYVKEAHLGFVTGLTFSPDSR-----YLASVSSDNEAAVTKLAVDKT  358 (398)
T ss_pred             CCcEEEEEeceee--eeEeehhhheeeeeeEEEcCCcC-----cccccccCCceeEEEEeeccc
Confidence            9999999999866  33445578999999999999884     799999999999999887443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=2.1e-14  Score=132.56  Aligned_cols=229  Identities=14%  Similarity=0.090  Sum_probs=152.2

Q ss_pred             C-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC---CeEEEEeCCCCcccccccccCccccceee
Q 013717          117 H-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD---CKIRVWQLTPTKHHKLKTTLPTVNDRLLR  190 (437)
Q Consensus       117 d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~  190 (437)
                      + .|.+||.+....+   .+   ..|...+....|+|++  |+.++.+   ..|.+||+.+++.... ..          
T Consensus       183 ~~~i~i~d~dg~~~~---~l---t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~----------  245 (429)
T PRK01742        183 PYEVRVADYDGFNQF---IV---NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-AS----------  245 (429)
T ss_pred             eEEEEEECCCCCCce---Ee---ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ec----------
Confidence            5 8999999875322   22   3477789999999876  7666543   4799999987653221 11          


Q ss_pred             ecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEE-ECCCcEEEE--ECCCcceEEEeecccccEEEEEEecCCe
Q 013717          191 FMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSV-SWDKSLKIW--RASDLRCLESIKAHEDAVNAVAVSAGGT  265 (437)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~-~~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~  265 (437)
                                          ..+.....+|+|  +.|+.+ ..+|.+.||  |+.+++. ..+..+...+....|+|||+
T Consensus       246 --------------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~  304 (429)
T PRK01742        246 --------------------FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQ  304 (429)
T ss_pred             --------------------CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCC
Confidence                                111233578888  566665 468876555  6666553 44555667788999999998


Q ss_pred             -EEEEe-CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccc
Q 013717          266 -VYTGS-ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHG  343 (437)
Q Consensus       266 -l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  343 (437)
                       |+..+ .+|...||+++.......   .+ .+..  ....|+|||++|+..+.++ +.+||+.+++... +...   +.
T Consensus       305 ~i~f~s~~~g~~~I~~~~~~~~~~~---~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~-lt~~---~~  373 (429)
T PRK01742        305 SILFTSDRSGSPQVYRMSASGGGAS---LV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV-LSST---FL  373 (429)
T ss_pred             EEEEEECCCCCceEEEEECCCCCeE---Ee-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE-ecCC---CC
Confidence             65544 578889998754332211   12 2332  4578999999998887765 6669998765322 1111   12


Q ss_pred             cceEEEEeeCCEEEEEeCCCcEEEeeCC--CCCCeeeeeeecCCCCCeeEEEEEcc
Q 013717          344 KAILCLINVAGLLMSGSADRTVRIWQRG--SDGRFGCLAVLEGHTKPVKSLTAVTE  397 (437)
Q Consensus       344 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~h~~~v~~l~~~~~  397 (437)
                      ..-..+++++.+|+.++.++.+.+|++.  .+.   ....+.+|.+.+...+|+|.
T Consensus       374 ~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~---~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        374 DESPSISPNGIMIIYSSTQGLGKVLQLVSADGR---FKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCCceECCCCCEEEEEEcCCCceEEEEEECCCC---ceEEccCCCCCCCCcccCCC
Confidence            2234566677799999999988888763  233   67778888888999999985

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.65  E-value=1.3e-12  Score=107.08  Aligned_cols=234  Identities=12%  Similarity=0.190  Sum_probs=156.4

Q ss_pred             eEEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeE-EEEecC------CeEEEEeCCC
Q 013717          101 IGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKI-FTAHQD------CKIRVWQLTP  171 (437)
Q Consensus       101 V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l-~s~~~d------g~i~iwd~~~  171 (437)
                      ..+++|+  ...++.|.++-.+||+.+-  .+....... ..-.-.+..+-|-.+.+ +.||.+      ..+.|||=..
T Consensus         8 ~lsvs~NQD~ScFava~~~Gfriyn~~P--~ke~~~r~~-~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k   84 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTGFRIYNCDP--FKESASRQF-IDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK   84 (346)
T ss_pred             eeEEEEccCCceEEEEecCceEEEecCc--hhhhhhhcc-ccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence            4457888  4556666655999999886  222111110 11113344444555652 333322      5799999333


Q ss_pred             CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECC-CcceEEEeec
Q 013717          172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRAS-DLRCLESIKA  250 (437)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~  250 (437)
                      .+....+                               ....+|.++.+.++.+++.- .+.|.||... +.+.++.+..
T Consensus        85 ~~~i~el-------------------------------~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et  132 (346)
T KOG2111|consen   85 ERCIIEL-------------------------------SFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIET  132 (346)
T ss_pred             CcEEEEE-------------------------------EeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeec
Confidence            3222222                               36779999999998777765 4689999987 5566665542


Q ss_pred             --ccccEEEEEEecCCe-EEE-EeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCc-EEEEE
Q 013717          251 --HEDAVNAVAVSAGGT-VYT-GSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRS-ILVWD  325 (437)
Q Consensus       251 --~~~~v~~~~~~~~~~-l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d  325 (437)
                        ....+.++.-..+.. ||. |-.-|.|+|-|+......  ....+.+|.+.|.+++.+-+|.++|+++..|+ |+|||
T Consensus       133 ~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFd  210 (346)
T KOG2111|consen  133 RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN--APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFD  210 (346)
T ss_pred             ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEE
Confidence              233344444333333 443 455799999998754422  23567789999999999999999999999997 68999


Q ss_pred             CCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCC
Q 013717          326 REDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSD  373 (437)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~  373 (437)
                      ..+++...++..  ......|.+++|+++  +|+++++.|++.||.++..
T Consensus       211 t~~g~~l~E~RR--G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  211 TEDGTLLQELRR--GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             cCCCcEeeeeec--CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            999986665543  234567889998877  9999999999999998763

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=3.2e-13  Score=112.38  Aligned_cols=292  Identities=14%  Similarity=0.155  Sum_probs=179.4

Q ss_pred             CCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCC
Q 013717           99 LPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPT  172 (437)
Q Consensus        99 ~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~  172 (437)
                      -.+.-++|+  -..+|++..| .|++||-.......++.     .....|+|++|-|..   |+.|+.. -|.+|.....
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks-----~sQrnvtclawRPlsaselavgCr~-gIciW~~s~t  172 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKS-----VSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRT  172 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecc-----hhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcc
Confidence            456677887  4556777777 99999988743333332     356789999998654   7777765 4899987643


Q ss_pred             ccccccc-ccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE-CCCcEEEEECCCcceEEEe
Q 013717          173 KHHKLKT-TLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS-WDKSLKIWRASDLRCLESI  248 (437)
Q Consensus       173 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~  248 (437)
                      ....... ........                 .....+| .+|+++.|++  ..+++++ .|..|.|||..++..+...
T Consensus       173 ln~~r~~~~~s~~~~q-----------------vl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~  234 (445)
T KOG2139|consen  173 LNANRNIRMMSTHHLQ-----------------VLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI  234 (445)
T ss_pred             cccccccccccccchh-----------------heeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc
Confidence            2221110 00000000                 0011234 7899999998  6666665 4678999999999877666


Q ss_pred             ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECC
Q 013717          249 KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE  327 (437)
Q Consensus       249 ~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (437)
                      ....+.++-+.|+||+. |++++.|+..++|+...   .+...+ ..-..+.|...+|+|+|++|+.+.. |.-++|.+.
T Consensus       235 ~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q---~wt~er-w~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~  309 (445)
T KOG2139|consen  235 PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQ---SWTKER-WILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLT  309 (445)
T ss_pred             ccCCCceeeEEEcCCCCEEEEecccceeeeehhcc---cceecc-eeccCCceeeeeecCCCCEEEEEEc-CCceEEEEe
Confidence            55667899999999999 99999999999995432   112222 2224458999999999997665543 334455543


Q ss_pred             CCccceEEe-----------eeec------c---cccceEEEEee--CCEEEEEeCCC--------cEEEeeCCCCCCee
Q 013717          328 DSANHMVVT-----------GALR------G---HGKAILCLINV--AGLLMSGSADR--------TVRIWQRGSDGRFG  377 (437)
Q Consensus       328 ~~~~~~~~~-----------~~~~------~---~~~~i~~~~~~--~~~l~~~~~dg--------~i~iwd~~~~~~~~  377 (437)
                      -..+.....           ..+.      +   -.+.+-+++|+  |++|++.-..+        .|.+||.+....++
T Consensus       310 f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ve  389 (445)
T KOG2139|consen  310 FDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVE  389 (445)
T ss_pred             ecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceE
Confidence            221111111           1110      0   12344455554  66888776544        47778877644332


Q ss_pred             ee--eeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          378 CL--AVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       378 ~~--~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      ..  ....+  ..-..|.|.|..+  .+.+|..+=.-|.+.-|++..-
T Consensus       390 ls~cg~i~g--e~P~~IsF~pl~n--~g~lLsiaWsTGriq~ypl~f~  433 (445)
T KOG2139|consen  390 LSYCGMIGG--EYPAYISFGPLKN--EGRLLSIAWSTGRIQRYPLTFQ  433 (445)
T ss_pred             EEecccccC--CCCceEEeeeccc--CCcEEEEEeccCceEeeeeEEE
Confidence            22  11122  2245667777553  2346766777788988887653

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.64  E-value=3.7e-14  Score=119.04  Aligned_cols=253  Identities=10%  Similarity=0.097  Sum_probs=177.2

Q ss_pred             CCcccEEEEEEeCCe----EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcE
Q 013717          140 SSSGSVKSVTFCDGK----IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV  215 (437)
Q Consensus       140 ~h~~~v~~l~~~~~~----l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  215 (437)
                      .....|..++|..+.    ++..+.|..+....+...........+                        ........+|
T Consensus        53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~------------------------~~~~l~~~~I  108 (412)
T KOG3881|consen   53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDA------------------------KTVSLGTKSI  108 (412)
T ss_pred             chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccc------------------------cccccccccc
Confidence            345678888887332    444447777777776655433332111                        1112356778


Q ss_pred             EEEEeCCCeEEEEECCCcEEEEECCCcc----eEEEeecccccEEEEEEecCCe--EEEEeCC--CeEEEecCCCCcccc
Q 013717          216 TGLAVNNGLIYSVSWDKSLKIWRASDLR----CLESIKAHEDAVNAVAVSAGGT--VYTGSAD--RKIRVWAKPFNEKRH  287 (437)
Q Consensus       216 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~--l~~~~~d--g~v~iwd~~~~~~~~  287 (437)
                      ..++.....|++|-.+|.+.+|..+.+.    .+..+. ....+..|.-++...  +++|+..  ..+.+||+....+.+
T Consensus       109 ~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw  187 (412)
T KOG3881|consen  109 KGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIW  187 (412)
T ss_pred             cchhhcCCEEEEEecCCcEEEEeccCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecccceeee
Confidence            8888888999999999999999987442    233333 235577777666555  6779998  899999987653221


Q ss_pred             eeeEEee---C--ccccEEEEEEccC--CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEe
Q 013717          288 ALIATLE---K--HKSAVNALALSDD--GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGS  360 (437)
Q Consensus       288 ~~~~~~~---~--~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~  360 (437)
                      ..-..-.   +  -.-.++++.|-+.  ...|++++.-+.+++||.+.++++.. ...+..+.-..+.+.+++++|++|.
T Consensus       188 ~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~-~fd~~E~~is~~~l~p~gn~Iy~gn  266 (412)
T KOG3881|consen  188 SAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA-QFDFLENPISSTGLTPSGNFIYTGN  266 (412)
T ss_pred             eccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee-EeccccCcceeeeecCCCcEEEEec
Confidence            1100000   0  1234678999987  88999999999999999997655443 3334444444455667788999999


Q ss_pred             CCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          361 ADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       361 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      .-|.+..||++.+.  .....+.+-.+.|++|..+|..+     +++++|-|..|||+|+++.++
T Consensus       267 ~~g~l~~FD~r~~k--l~g~~~kg~tGsirsih~hp~~~-----~las~GLDRyvRIhD~ktrkl  324 (412)
T KOG3881|consen  267 TKGQLAKFDLRGGK--LLGCGLKGITGSIRSIHCHPTHP-----VLASCGLDRYVRIHDIKTRKL  324 (412)
T ss_pred             ccchhheecccCce--eeccccCCccCCcceEEEcCCCc-----eEEeeccceeEEEeecccchh
Confidence            99999999999877  23344888999999999999874     899999999999999998554

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.64  E-value=3.7e-14  Score=117.12  Aligned_cols=318  Identities=14%  Similarity=0.205  Sum_probs=207.2

Q ss_pred             ceeeccccccccccCCCceeEEecCCCcceeeeecCc--cCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717           61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGH--KLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTF  135 (437)
Q Consensus        61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h--~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~  135 (437)
                      .....|-.+.+.+++.|.++++|--....+.-..+.|  ..+++++.+.  ...|+.|-.+ ++.-+.+... .......
T Consensus        29 ~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed-fnkm~~~  107 (404)
T KOG1409|consen   29 AAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSED-FNKMTFL  107 (404)
T ss_pred             hheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhh-hhhcchh
Confidence            4456788889999999999999987666665555534  5778888888  6777788777 8888877542 2233333


Q ss_pred             ccCCCCcccEEEEEEe--CCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717          136 NDNDSSSGSVKSVTFC--DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD  213 (437)
Q Consensus       136 ~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (437)
                      +.+..|...|..+.|+  +..+++.+.|..+.---.+.+........                               ..
T Consensus       108 r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-------------------------------~~  156 (404)
T KOG1409|consen  108 KDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-------------------------------ET  156 (404)
T ss_pred             hhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-------------------------------ec
Confidence            3446799999999998  33488999988775444444432211110                               00


Q ss_pred             cEEEEEeCCCeEEEEECCCcEEEEEC--CCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceee
Q 013717          214 AVTGLAVNNGLIYSVSWDKSLKIWRA--SDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALI  290 (437)
Q Consensus       214 ~v~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~  290 (437)
                      ..+++.+.-.+...|...|.|.+..+  .....+.++.+|.+.+.+++|.+... +++|..|..+.+||+..+.   ...
T Consensus       157 ~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~---g~~  233 (404)
T KOG1409|consen  157 PASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK---GTA  233 (404)
T ss_pred             cCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc---cee
Confidence            11111111124455556666655443  34567788889999999999999777 9999999999999986443   245


Q ss_pred             EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccce----------EEeee---------------eccc---
Q 013717          291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHM----------VVTGA---------------LRGH---  342 (437)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~---------------~~~~---  342 (437)
                      ..+.+|...|..+...+--+.+++++.||.|.+|+++......          ...+.               +..|   
T Consensus       234 ~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~cr  313 (404)
T KOG1409|consen  234 YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCR  313 (404)
T ss_pred             eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhh
Confidence            5677899999999988888899999999999999987421100          00000               0001   


Q ss_pred             -ccceEEEEeeCC--EEEEEeCCCcEEEe--------eCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecC
Q 013717          343 -GKAILCLINVAG--LLMSGSADRTVRIW--------QRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSL  411 (437)
Q Consensus       343 -~~~i~~~~~~~~--~l~~~~~dg~i~iw--------d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~  411 (437)
                       -+...+..-..+  ...+-+..-.+|+-        |...    .+++.+..-...|+.|.+....+     +|+|+|.
T Consensus       314 kcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~----t~LA~phei~tgItamhlqetlg-----lLvTsG~  384 (404)
T KOG1409|consen  314 KCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEER----TPLAIPHEIKTGITAMHLQETLG-----LLVTSGT  384 (404)
T ss_pred             hhhhhcCcccccCccccccccceeEEEEecccchhhhcCCC----CccccccccccceeEEEhhhhcc-----ceeecCC
Confidence             111111111111  22222222234443        3332    24555555556899998887765     7999999


Q ss_pred             CCcEEEEeecc
Q 013717          412 DGEIRAWQVSV  422 (437)
Q Consensus       412 dg~i~iw~~~~  422 (437)
                      |..|+|||++.
T Consensus       385 ~Rvi~iwd~~~  395 (404)
T KOG1409|consen  385 DRVIKIWDVRS  395 (404)
T ss_pred             ceEEEEEechh
Confidence            99999999975

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=5.1e-15  Score=129.39  Aligned_cols=215  Identities=19%  Similarity=0.219  Sum_probs=156.1

Q ss_pred             eeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee-cccccEEEEEEecCC--e-EEEEeCCCeEEEec
Q 013717          206 KLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGG--T-VYTGSADRKIRVWA  279 (437)
Q Consensus       206 ~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~--~-l~~~~~dg~v~iwd  279 (437)
                      ..+.||.+-|+++.|+.  .+|++|+.|-.+.|||.-..+.+..+. +|...|.++.|-|..  + +++|..|..|++||
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd  123 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD  123 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence            44578999999999987  899999999999999999888888875 899999999999843  3 89999999999999


Q ss_pred             CCCCcc------cceeeEEeeCccccEEEEEEccCC-CEEEEEeCCCcEEEEECCCCccceEE------eeeecccccce
Q 013717          280 KPFNEK------RHALIATLEKHKSAVNALALSDDG-TVLFSGACDRSILVWDREDSANHMVV------TGALRGHGKAI  346 (437)
Q Consensus       280 ~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~~~~~i  346 (437)
                      +.....      .......+..|...|..++..|++ +.+.++++||+|+-||++.......-      ...+...-...
T Consensus       124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel  203 (758)
T KOG1310|consen  124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL  203 (758)
T ss_pred             cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence            974221      123344566788899999999988 78999999999999999864321110      00111122233


Q ss_pred             EEEEeeC---CEEEEEeCCCcEEEeeCCCCCC---------------eeeeeee-cCCC-----------CCeeEEEEEc
Q 013717          347 LCLINVA---GLLMSGSADRTVRIWQRGSDGR---------------FGCLAVL-EGHT-----------KPVKSLTAVT  396 (437)
Q Consensus       347 ~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~---------------~~~~~~~-~~h~-----------~~v~~l~~~~  396 (437)
                      .|+..++   .+|++|+.|-..++||.+...+               -.++..+ .+|-           ..++-++|+|
T Consensus       204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnp  283 (758)
T KOG1310|consen  204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNP  283 (758)
T ss_pred             eeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECC
Confidence            5555554   3999999999999999432110               0112222 1222           1256778889


Q ss_pred             cCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          397 EEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       397 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      ++..    +|++-+.+ .|+++|+..+++
T Consensus       284 NGtE----lLvs~~gE-hVYlfdvn~~~~  307 (758)
T KOG1310|consen  284 NGTE----LLVSWGGE-HVYLFDVNEDKS  307 (758)
T ss_pred             CCcE----EEEeeCCe-EEEEEeecCCCC
Confidence            8764    78877765 799999988764

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.61  E-value=1.5e-13  Score=113.62  Aligned_cols=278  Identities=13%  Similarity=0.171  Sum_probs=171.0

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCC---ceeeeeccccC---------CCCcccEEEEEEeCCe----EE
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGT---TWTSINTFNDN---------DSSSGSVKSVTFCDGK----IF  156 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~---~~~~~~~~~~~---------~~h~~~v~~l~~~~~~----l~  156 (437)
                      ...+-|.++.|+  |++||+|..+ .|.++.-...   +......+...         ..-...|..+.|.+..    ++
T Consensus        23 teadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   23 TEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             chhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            445778999998  9999999999 9999876542   11222222111         1124568889998443    88


Q ss_pred             EEecCCeEEEEeCCCCcccccccccCccc-----cceeee-cCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEE
Q 013717          157 TAHQDCKIRVWQLTPTKHHKLKTTLPTVN-----DRLLRF-MLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVS  229 (437)
Q Consensus       157 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~  229 (437)
                      ..+.|.+|++|.+........-..++...     ..+... ..+.............-..|...|+++.++. ...+..+
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA  182 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA  182 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence            88899999999987654333111111110     000011 1111111222222223357899999999988 4455556


Q ss_pred             CCCcEEEEECCCcceEEE---ee-----cccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEE-------
Q 013717          230 WDKSLKIWRASDLRCLES---IK-----AHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIAT-------  292 (437)
Q Consensus       230 ~dg~i~iwd~~~~~~~~~---~~-----~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~-------  292 (437)
                      .|-.|.+|+++--.....   ++     ....-|++..|+|...  ++..+..|+|++-|++...........       
T Consensus       183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp  262 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP  262 (433)
T ss_pred             cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence            788999999864332222   22     2235688999999665  888889999999999843211111111       


Q ss_pred             -----eeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecc---------cccce---EEEEeeCC-
Q 013717          293 -----LEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRG---------HGKAI---LCLINVAG-  354 (437)
Q Consensus       293 -----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---------~~~~i---~~~~~~~~-  354 (437)
                           +..--..|..+.|+++|+|+++-+. -+|++||+.....+.........         ....|   ..++|+|+ 
T Consensus       263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~  341 (433)
T KOG1354|consen  263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND  341 (433)
T ss_pred             cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence                 1122356889999999999998643 58999999655444333221111         01122   44567776 


Q ss_pred             -EEEEEeCCCcEEEeeCCCCC
Q 013717          355 -LLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       355 -~l~~~~~dg~i~iwd~~~~~  374 (437)
                       ++++|+....+++|++..+.
T Consensus       342 ~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  342 SYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             ceEecccccceEEEecCCCCc
Confidence             99999999999999965544

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.61  E-value=8.5e-14  Score=130.77  Aligned_cols=189  Identities=21%  Similarity=0.270  Sum_probs=149.2

Q ss_pred             eCCCeEEEEECCCcEEEEECCCcceEEEeeccccc-EEE---EEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEee
Q 013717          220 VNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDA-VNA---VAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLE  294 (437)
Q Consensus       220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~---~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  294 (437)
                      +....++.+..++.+-+||...+.....+...... ..+   +-++++.- +++|+.-+.|.+|+...+.   ... .+.
T Consensus        97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn---~p~-~l~  172 (967)
T KOG0974|consen   97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN---KPI-RLK  172 (967)
T ss_pred             hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC---Ccc-eec
Confidence            33488899999999999999888776666522221 111   12234444 8999999999999886333   222 678


Q ss_pred             CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717          295 KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~  374 (437)
                      +|.+.|.++.++.||+++++.+.|.++++|++++.+...   ...-+|...+..+.+.++.+++++.|.+.++|+...  
T Consensus       173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~--  247 (967)
T KOG0974|consen  173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---CTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNG--  247 (967)
T ss_pred             ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---cccccccceeEEEEeccceeEEeccceEEEEEeccc--
Confidence            999999999999999999999999999999999876443   345689999999999999999999999999997764  


Q ss_pred             CeeeeeeecCCCC-CeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          375 RFGCLAVLEGHTK-PVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       375 ~~~~~~~~~~h~~-~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                        ..+..+.+|.. .|..++..++..     .++|++.||.+++|++..-.
T Consensus       248 --~~l~~y~~h~g~~iw~~~~~~~~~-----~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  248 --TQLEVYDEHSGKGIWKIAVPIGVI-----IKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             --ceehhhhhhhhcceeEEEEcCCce-----EEEeeccCcchhhhhhhccc
Confidence              24557777865 689998888774     79999999999999976543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.61  E-value=1.4e-12  Score=106.89  Aligned_cols=175  Identities=12%  Similarity=0.186  Sum_probs=133.0

Q ss_pred             ceeEEecCCCcceeeeecCccCCeEEEEeeCCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--E
Q 013717           78 ETINFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--I  155 (437)
Q Consensus        78 g~i~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l  155 (437)
                      ..+.+|| +....++..+....+|.++.+..+.+++.-.+.|.||...+. .+.+..+.... ....+.+++-..+.  |
T Consensus        75 NkviIWD-D~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n-~k~l~~~et~~-NPkGlC~~~~~~~k~~L  151 (346)
T KOG2111|consen   75 NKVIIWD-DLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDN-PKLLHVIETRS-NPKGLCSLCPTSNKSLL  151 (346)
T ss_pred             ceEEEEe-cccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCC-hhheeeeeccc-CCCceEeecCCCCceEE
Confidence            4688999 555777788899999999999999999999999999999853 33333332211 22334444444333  3


Q ss_pred             E-EEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCC
Q 013717          156 F-TAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDK  232 (437)
Q Consensus       156 ~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg  232 (437)
                      + -|-.-|.|+|-|+...+..                            ...+...|...|.|++.+.  ..+|+++..|
T Consensus       152 afPg~k~GqvQi~dL~~~~~~----------------------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG  203 (346)
T KOG2111|consen  152 AFPGFKTGQVQIVDLASTKPN----------------------------APSIINAHDSDIACVALNLQGTLVATASTKG  203 (346)
T ss_pred             EcCCCccceEEEEEhhhcCcC----------------------------CceEEEcccCceeEEEEcCCccEEEEeccCc
Confidence            3 2345689999998765431                            0123356999999999987  8999999999


Q ss_pred             c-EEEEECCCcceEEEee--cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCC
Q 013717          233 S-LKIWRASDLRCLESIK--AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFN  283 (437)
Q Consensus       233 ~-i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~  283 (437)
                      + |||||..+|+.+++++  .....|.+|+|+|+.. |++++..|+|+||.++..
T Consensus       204 TLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  204 TLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            8 7999999999999997  3456799999999999 999999999999988753

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=1.5e-12  Score=108.44  Aligned_cols=277  Identities=15%  Similarity=0.209  Sum_probs=181.4

Q ss_pred             ceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee---CCEEEEEecCeEEEEeCCCCceeee-----
Q 013717           61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH---HNFLYAASSHEINVYDRTGTTWTSI-----  132 (437)
Q Consensus        61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~---~~~l~s~~~d~v~vwd~~~~~~~~~-----  132 (437)
                      .+.-++....++.+..|-.|++++......++..-.-...|+|++|-   +.-|+.|...-|.+|..........     
T Consensus       103 ~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~  182 (445)
T KOG2139|consen  103 GVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMM  182 (445)
T ss_pred             eEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccc
Confidence            45667777888889999999999987744333333667899999997   7889999988999998765211111     


Q ss_pred             ----eccccCCCCcccEEEEEEeCCe--EEEEec-CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccc
Q 013717          133 ----NTFNDNDSSSGSVKSVTFCDGK--IFTAHQ-DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKK  205 (437)
Q Consensus       133 ----~~~~~~~~h~~~v~~l~~~~~~--l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (437)
                          ..+....+| ..|++|.|.+++  +++++. |..|.|||.+++.......                          
T Consensus       183 s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~--------------------------  235 (445)
T KOG2139|consen  183 STHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP--------------------------  235 (445)
T ss_pred             cccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc--------------------------
Confidence                011111344 789999999776  777764 6789999999987655542                          


Q ss_pred             eeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCC
Q 013717          206 KLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKP  281 (437)
Q Consensus       206 ~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~  281 (437)
                          ...+.+.-+.|+|  .+|+++.-|+..++|+.....-........+.|..-.|+|+|.  |++.+.  .-++|.+.
T Consensus       236 ----~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg--sp~lysl~  309 (445)
T KOG2139|consen  236 ----KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG--SPRLYSLT  309 (445)
T ss_pred             ----cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC--CceEEEEe
Confidence                1446788899999  8999999999999996544333333333456899999999998  444443  34445443


Q ss_pred             CCcccc-----------eeeEEee---------CccccEEEEEEccCCCEEEEEeCCC--------cEEEEECCCCccce
Q 013717          282 FNEKRH-----------ALIATLE---------KHKSAVNALALSDDGTVLFSGACDR--------SILVWDREDSANHM  333 (437)
Q Consensus       282 ~~~~~~-----------~~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~~~~  333 (437)
                      ...+..           .++..+.         ...+.+.+++|.|.|.+|++.-..+        .|.+||.+... ..
T Consensus       310 f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp-~v  388 (445)
T KOG2139|consen  310 FDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP-PV  388 (445)
T ss_pred             ecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC-ce
Confidence            222111           1111111         1246788999999999999876543        36677776432 11


Q ss_pred             EEe--eeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCC
Q 013717          334 VVT--GALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRG  371 (437)
Q Consensus       334 ~~~--~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~  371 (437)
                      .+.  ....+......++.+..+   +|..+=..|.+.-|++.
T Consensus       389 els~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  389 ELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             EEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            121  222333333445544422   66677777878777665

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=2.7e-14  Score=121.13  Aligned_cols=192  Identities=19%  Similarity=0.256  Sum_probs=142.0

Q ss_pred             EEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-
Q 013717          146 KSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-  222 (437)
Q Consensus       146 ~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  222 (437)
                      ..++|+.++  +++++.||++|+|+..+.......                              ..|...|.++.|+| 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e------------------------------~~~~~eV~DL~FS~d  197 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE------------------------------IAHHAEVKDLDFSPD  197 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh------------------------------HhhcCccccceeCCC
Confidence            677888553  999999999999997665433322                              24899999999999 


Q ss_pred             -CeEEEEECCCcEEEEECCCcceEEEee--cccccEEEEEEecCC-----eE-EEEeCCCeEEEecCCCCccccee--eE
Q 013717          223 -GLIYSVSWDKSLKIWRASDLRCLESIK--AHEDAVNAVAVSAGG-----TV-YTGSADRKIRVWAKPFNEKRHAL--IA  291 (437)
Q Consensus       223 -~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-----~l-~~~~~dg~v~iwd~~~~~~~~~~--~~  291 (437)
                       ++|++.+.| ..+||+++++..+....  ..+.....+.|+.|+     ++ +.....+.|+.||+..-... ..  .+
T Consensus       198 gk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~  275 (398)
T KOG0771|consen  198 GKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLR  275 (398)
T ss_pred             CcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchh
Confidence             799999999 99999999997766654  233456677787776     33 33344567777765432211 11  11


Q ss_pred             EeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEee
Q 013717          292 TLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQ  369 (437)
Q Consensus       292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd  369 (437)
                      +.......|.+++.++||++++.|+.||.|-|++..+.+.   .....+.|...|+.+.|.|+  ++++.+.|.++.|..
T Consensus       276 ~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~---~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~  352 (398)
T KOG0771|consen  276 KKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR---LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK  352 (398)
T ss_pred             hhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee---eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence            1222345799999999999999999999999999976543   33345679999999999887  888888898888887


Q ss_pred             CCC
Q 013717          370 RGS  372 (437)
Q Consensus       370 ~~~  372 (437)
                      +.-
T Consensus       353 l~v  355 (398)
T KOG0771|consen  353 LAV  355 (398)
T ss_pred             Eee
Confidence            764

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=9.5e-13  Score=121.64  Aligned_cols=193  Identities=14%  Similarity=0.051  Sum_probs=125.0

Q ss_pred             cCCCcEEEEEeCC--CeEEEEECC---CcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEE-eCCCeEEEecCCC
Q 013717          210 EHGDAVTGLAVNN--GLIYSVSWD---KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTG-SADRKIRVWAKPF  282 (437)
Q Consensus       210 ~~~~~v~~~~~~~--~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~-~~dg~v~iwd~~~  282 (437)
                      .|...+....|+|  +.|+.++.+   ..|++||+.+++... +....+....++|+|||+ |+.+ ..+|.+.||.++.
T Consensus       201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~  279 (429)
T PRK01742        201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGA  279 (429)
T ss_pred             cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecCCcEEEEEEEC
Confidence            4677889999999  677776643   469999998875432 222233445789999998 6665 4688776664432


Q ss_pred             CcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeC
Q 013717          283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSA  361 (437)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~  361 (437)
                      ...   ....+..+...+....|+|||+.|+..+ .+|...||++..........    .+......+++++++|+..+.
T Consensus       280 ~~~---~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l----~~~~~~~~~SpDG~~ia~~~~  352 (429)
T PRK01742        280 NGG---TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV----GGRGYSAQISADGKTLVMING  352 (429)
T ss_pred             CCC---CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe----cCCCCCccCCCCCCEEEEEcC
Confidence            221   1334455666788999999999777554 57888888875432222222    122222345556678877777


Q ss_pred             CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          362 DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       362 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      ++ +.+||+.+++.   ......+  ....+.|+|++.     +|+.++.+|.+.+|++.
T Consensus       353 ~~-i~~~Dl~~g~~---~~lt~~~--~~~~~~~sPdG~-----~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        353 DN-VVKQDLTSGST---EVLSSTF--LDESPSISPNGI-----MIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             CC-EEEEECCCCCe---EEecCCC--CCCCceECCCCC-----EEEEEEcCCCceEEEEE
Confidence            65 66699987652   1111222  235678999985     78888889999888864

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.59  E-value=3.3e-15  Score=127.91  Aligned_cols=224  Identities=12%  Similarity=0.190  Sum_probs=176.0

Q ss_pred             cEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717          144 SVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN  221 (437)
Q Consensus       144 ~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  221 (437)
                      ....+.++.++  ++.|+..|.|..+|..+++....+.                               -...|.++.|-
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-------------------------------v~Etv~Dv~~L  179 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-------------------------------VMETVRDVTFL  179 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-------------------------------hhhhhhhhhhh
Confidence            44567777444  9999999999999999987665554                               34467778775


Q ss_pred             C-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCcccc
Q 013717          222 N-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSA  299 (437)
Q Consensus       222 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  299 (437)
                      . ..+++......++|||- .|..++.++.+ ..|..+.|.|.-. |++++..|.++.-|+..+.    .+..+....+.
T Consensus       180 Hneq~~AVAQK~y~yvYD~-~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk----lVa~~~t~~G~  253 (545)
T KOG1272|consen  180 HNEQFFAVAQKKYVYVYDN-NGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK----LVASIRTGAGR  253 (545)
T ss_pred             cchHHHHhhhhceEEEecC-CCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhh----hhHHHHccCCc
Confidence            5 55556677889999994 67778888744 4599999999888 8899999999999887664    66667767788


Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC--CEEEEEeCCCcEEEeeCCCCCCee
Q 013717          300 VNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLLMSGSADRTVRIWQRGSDGRFG  377 (437)
Q Consensus       300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~  377 (437)
                      +..+.-+|-+..+-+|..+|+|.+|.....+..    ..+..|.++|.++++++  .+++|.+.|..++|||++.-.   
T Consensus       254 ~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL----vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~---  326 (545)
T KOG1272|consen  254 TDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL----VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY---  326 (545)
T ss_pred             cchhhcCCccceEEEcCCCceEEecCCCCcchH----HHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc---
Confidence            999999998889999999999999999776533    33456899998888874  499999999999999999754   


Q ss_pred             eeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717          378 CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       378 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~  419 (437)
                      .+.++.. ..+...++++..+       ++++|....|.||.
T Consensus       327 ql~t~~t-p~~a~~ls~Sqkg-------lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  327 QLHTYRT-PHPASNLSLSQKG-------LLALSYGDHVQIWK  360 (545)
T ss_pred             ccceeec-CCCcccccccccc-------ceeeecCCeeeeeh
Confidence            3333332 4567888899877       55566666899996

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.54  E-value=7e-14  Score=122.09  Aligned_cols=198  Identities=14%  Similarity=0.185  Sum_probs=147.9

Q ss_pred             CeEEEEECCCcEEEEECCCcceEEEee----cccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcc-----------
Q 013717          223 GLIYSVSWDKSLKIWRASDLRCLESIK----AHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEK-----------  285 (437)
Q Consensus       223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~-----------  285 (437)
                      --++.|-..|.|.+.|....+....+.    ..+..|+|+.|-|.+.  ++++..+|.+.+||......           
T Consensus       186 ~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~  265 (636)
T KOG2394|consen  186 LDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKD  265 (636)
T ss_pred             cceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCC
Confidence            456778888999999987633222121    2357899999998765  88888999999997642110           


Q ss_pred             -------------cceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee
Q 013717          286 -------------RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV  352 (437)
Q Consensus       286 -------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~  352 (437)
                                   ...++..+.-..+.|+..+|+|||++||+.+.||.++|||..+.+    +....+..-+..+|++|+
T Consensus       266 ~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e----Llg~mkSYFGGLLCvcWS  341 (636)
T KOG2394|consen  266 GDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE----LLGVMKSYFGGLLCVCWS  341 (636)
T ss_pred             CCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH----HHHHHHhhccceEEEEEc
Confidence                         001222333345688999999999999999999999999998765    333334445667777776


Q ss_pred             CC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc-------------------------------CC
Q 013717          353 AG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE-------------------------------EG  399 (437)
Q Consensus       353 ~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~-------------------------------~~  399 (437)
                      ++  +|++|++|--|.||.+...+   .+..-++|+..|..++|.|-                               +.
T Consensus       342 PDGKyIvtGGEDDLVtVwSf~erR---VVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S  418 (636)
T KOG2394|consen  342 PDGKYIVTGGEDDLVTVWSFEERR---VVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGS  418 (636)
T ss_pred             CCccEEEecCCcceEEEEEeccce---EEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCC
Confidence            55  99999999999999999765   88899999999999999831                               00


Q ss_pred             C-C-----------ceEEEEEecCCCcEEEEeeccCCCCC
Q 013717          400 Q-N-----------GVVSVFSGSLDGEIRAWQVSVSCPNS  427 (437)
Q Consensus       400 ~-~-----------~~~~l~s~~~dg~i~iw~~~~~~~~~  427 (437)
                      . .           ....+.+.|.|-.+.+||++......
T Consensus       419 ~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~  458 (636)
T KOG2394|consen  419 AEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP  458 (636)
T ss_pred             cCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence            0 0           24678999999999999999887655

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.53  E-value=7.1e-12  Score=103.25  Aligned_cols=323  Identities=16%  Similarity=0.161  Sum_probs=202.3

Q ss_pred             eeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--C-CEEEEEecC-eEEEEeCCCCceeeeecccc
Q 013717           62 LQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--H-NFLYAASSH-EINVYDRTGTTWTSINTFND  137 (437)
Q Consensus        62 ~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~-~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~  137 (437)
                      -.|+|..+.+++.+.. .+.+-|... -+..+.+---+.|.-+.|.  . ..|.....+ .|.+|++...++.+...   
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~t-lq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId---   88 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSET-LQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID---   88 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccch-hhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec---
Confidence            4788999999988876 555544433 2223333345677788887  3 345555677 99999999876665543   


Q ss_pred             CCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccc---------
Q 013717          138 NDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKK---------  205 (437)
Q Consensus       138 ~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  205 (437)
                        ....++.+++|+|++   |.+...|-.|.+|.+.+.+......  +........+..+..+.++..+..         
T Consensus        89 --eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~  164 (447)
T KOG4497|consen   89 --EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH--PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS  164 (447)
T ss_pred             --cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--cccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence              467899999999876   7788899999999998875433221  222222333344444444322221         


Q ss_pred             -------eeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEE
Q 013717          206 -------KLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRV  277 (437)
Q Consensus       206 -------~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~i  277 (437)
                             +.+.-.+-..+++.|+|       .+..+.+||..-.-.+..+. -.-.+..++|+|.++ +++|+.|+.+++
T Consensus       165 c~~W~ll~~f~~dT~DltgieWsP-------dg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrv  236 (447)
T KOG4497|consen  165 CKAWILLKEFKLDTIDLTGIEWSP-------DGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRV  236 (447)
T ss_pred             hHHHHHHHhcCCCcccccCceECC-------CCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhh
Confidence                   11122334556677766       23445677743222222222 234688999999888 999999999988


Q ss_pred             ecCCCCc--------------------------------------------------------ccceeeEEee------C
Q 013717          278 WAKPFNE--------------------------------------------------------KRHALIATLE------K  295 (437)
Q Consensus       278 wd~~~~~--------------------------------------------------------~~~~~~~~~~------~  295 (437)
                      .+--+-.                                                        .....+..++      .
T Consensus       237 lnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pn  316 (447)
T KOG4497|consen  237 LNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPN  316 (447)
T ss_pred             hceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCC
Confidence            6321000                                                        0000011111      1


Q ss_pred             ccccEEEEEEccCCCEEEEEeC--CCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCC
Q 013717          296 HKSAVNALALSDDGTVLFSGAC--DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRG  371 (437)
Q Consensus       296 ~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~  371 (437)
                      ....+--++|++|..++++-..  -+.+-+||++..+....+     ....+|.++.|++.  .|+.+.....+++|...
T Consensus       317 Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-----iQk~piraf~WdP~~prL~vctg~srLY~W~ps  391 (447)
T KOG4497|consen  317 PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-----IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPS  391 (447)
T ss_pred             cccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-----hhccceeEEEeCCCCceEEEEcCCceEEEEcCC
Confidence            2334677999999999888643  357899999765432222     23567888899876  67777777789999887


Q ss_pred             CCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcE
Q 013717          372 SDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEI  415 (437)
Q Consensus       372 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  415 (437)
                      ...   ++... +..-.|..+.|.-+++     +++-.+.|...
T Consensus       392 g~~---~V~vP-~~GF~i~~l~W~~~g~-----~i~l~~kDafc  426 (447)
T KOG4497|consen  392 GPR---VVGVP-KKGFNIQKLQWLQPGE-----FIVLCGKDAFC  426 (447)
T ss_pred             Cce---EEecC-CCCceeeeEEecCCCc-----EEEEEcCCceE
Confidence            522   33332 2346899999998885     68888888643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=7.9e-12  Score=115.27  Aligned_cols=228  Identities=11%  Similarity=0.033  Sum_probs=145.6

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEe---cCCeEEEEeCCCCcccccccccCccccceeeec
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAH---QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFM  192 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  192 (437)
                      .|.+||.+....+.+.      .+...+...+|+|++  |+..+   .+..|.+|++.+++......             
T Consensus       180 ~l~~~d~dg~~~~~lt------~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-------------  240 (429)
T PRK03629        180 ELRVSDYDGYNQFVVH------RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-------------  240 (429)
T ss_pred             eEEEEcCCCCCCEEee------cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-------------
Confidence            7999998875433332      256789999999876  55443   34579999998765322211             


Q ss_pred             CCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEE-ECCC--cEEEEECCCcceEEEeecccccEEEEEEecCCe-E
Q 013717          193 LPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSV-SWDK--SLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-V  266 (437)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l  266 (437)
                                        ....+....|+|  +.|+.. ..+|  .|.+||+.+++.... ..+...+....|+|||+ |
T Consensus       241 ------------------~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I  301 (429)
T PRK03629        241 ------------------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNL  301 (429)
T ss_pred             ------------------CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEE
Confidence                              122234577888  555544 4455  588999988765443 33445678899999998 7


Q ss_pred             EEEeC-CCeEEEe--cCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC---CcEEEEECCCCccceEEeeeec
Q 013717          267 YTGSA-DRKIRVW--AKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD---RSILVWDREDSANHMVVTGALR  340 (437)
Q Consensus       267 ~~~~~-dg~v~iw--d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~  340 (437)
                      +..+. ++...+|  |+....     ...+...........|+|||++|+..+.+   ..|++||+.+++.. .+.   .
T Consensus       302 ~f~s~~~g~~~Iy~~d~~~g~-----~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt---~  372 (429)
T PRK03629        302 AYTSDQAGRPQVYKVNINGGA-----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLT---D  372 (429)
T ss_pred             EEEeCCCCCceEEEEECCCCC-----eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeC---C
Confidence            66665 3455555  443321     22223334445678999999998876543   35888999876422 121   1


Q ss_pred             ccccceEEEEeeCCEEEEEeCCCc---EEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717          341 GHGKAILCLINVAGLLMSGSADRT---VRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT  396 (437)
Q Consensus       341 ~~~~~i~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~  396 (437)
                      .....-..+++++..|+.++.++.   +.++++...    ....+.+|.+.+...+|+|
T Consensus       373 ~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~----~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        373 TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR----FKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC----CeEECccCCCCcCCcccCC
Confidence            122223456677778888887764   677777542    3566777888899999987

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.50  E-value=6.4e-11  Score=111.86  Aligned_cols=151  Identities=21%  Similarity=0.213  Sum_probs=121.6

Q ss_pred             eccccceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeee
Q 013717           56 LQSNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSI  132 (437)
Q Consensus        56 ~~~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~  132 (437)
                      +-+.....+.+..-.+++++--+.|.+|......+.....||.+.|.++.++  |+++++.|+| ++|+|++++.+....
T Consensus       133 l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~  212 (967)
T KOG0974|consen  133 LYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC  212 (967)
T ss_pred             EEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc
Confidence            3344456777788889999999999999998666666555999999999997  9999999999 999999999543332


Q ss_pred             eccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC-
Q 013717          133 NTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH-  211 (437)
Q Consensus       133 ~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  211 (437)
                      ..    -+|+..|..++|.++.+++++.|.+.++|+.+..+.. .+.                              +| 
T Consensus       213 ~~----fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~~~l~-~y~------------------------------~h~  257 (967)
T KOG0974|consen  213 TG----FGHSARVWACCFLPNRIITVGEDCTCRVWGVNGTQLE-VYD------------------------------EHS  257 (967)
T ss_pred             cc----ccccceeEEEEeccceeEEeccceEEEEEecccceeh-hhh------------------------------hhh
Confidence            22    4799999999999999999999999999977654322 111                              23 


Q ss_pred             CCcEEEEEeCC--CeEEEEECCCcEEEEECCC
Q 013717          212 GDAVTGLAVNN--GLIYSVSWDKSLKIWRASD  241 (437)
Q Consensus       212 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~  241 (437)
                      ...|..++..+  ..+++++.||.+++||+..
T Consensus       258 g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  258 GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             hcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            45688888877  7889999999999998754

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.48  E-value=3.6e-10  Score=103.31  Aligned_cols=298  Identities=13%  Similarity=0.105  Sum_probs=177.1

Q ss_pred             ccccccCCCceeEEecCCCcceeeeecCccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEE-
Q 013717           69 PSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVK-  146 (437)
Q Consensus        69 ~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~-  146 (437)
                      ..+...+.+|.+..++.......-..--........+..++.++.++.+ .+..+|..+++..-...+      .+.+. 
T Consensus        66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~------~~~~~~  139 (377)
T TIGR03300        66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKL------SSEVLS  139 (377)
T ss_pred             CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeecc------Cceeec
Confidence            3455567778888888755433322221111122344557788888888 999999988643322222      12222 


Q ss_pred             EEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEE
Q 013717          147 SVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIY  226 (437)
Q Consensus       147 ~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~  226 (437)
                      .....++.++.++.+|.|..||.++++...........                     ..+.....+    ....+.++
T Consensus       140 ~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~---------------------~~~~~~~sp----~~~~~~v~  194 (377)
T TIGR03300       140 PPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA---------------------LTLRGSASP----VIADGGVL  194 (377)
T ss_pred             CCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc---------------------eeecCCCCC----EEECCEEE
Confidence            22234566888888999999999988754433211000                     000000111    12235677


Q ss_pred             EEECCCcEEEEECCCcceEEEeecccc----c------EE-EEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeC
Q 013717          227 SVSWDKSLKIWRASDLRCLESIKAHED----A------VN-AVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEK  295 (437)
Q Consensus       227 ~~~~dg~i~iwd~~~~~~~~~~~~~~~----~------v~-~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  295 (437)
                      .+..+|.+..+|.++++.+........    .      +. ...+ .++.+++++.+|.+..||..++...+    ... 
T Consensus       195 ~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W----~~~-  268 (377)
T TIGR03300       195 VGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLW----KRD-  268 (377)
T ss_pred             EECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEE----eec-
Confidence            888889999999999987765431100    0      10 1111 24568888899999999987654322    222 


Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCC
Q 013717          296 HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGR  375 (437)
Q Consensus       296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  375 (437)
                      . .......  .++..+++++.||.++.+|..+++....... ..  ..........++.|++++.+|.|+++|..+++ 
T Consensus       269 ~-~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~-~~--~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~-  341 (377)
T TIGR03300       269 A-SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDE-LK--YRQLTAPAVVGGYLVVGDFEGYLHWLSREDGS-  341 (377)
T ss_pred             c-CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcccc-cc--CCccccCEEECCEEEEEeCCCEEEEEECCCCC-
Confidence            1 1111222  2466888888999999999988875443311 11  11222333457799999999999999998877 


Q ss_pred             eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEE
Q 013717          376 FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAW  418 (437)
Q Consensus       376 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  418 (437)
                        .+..+..+...+..--...++      .|+.++.||.|+.+
T Consensus       342 --~~~~~~~~~~~~~~sp~~~~~------~l~v~~~dG~l~~~  376 (377)
T TIGR03300       342 --FVARLKTDGSGIASPPVVVGD------GLLVQTRDGDLYAF  376 (377)
T ss_pred             --EEEEEEcCCCccccCCEEECC------EEEEEeCCceEEEe
Confidence              666666555443332223333      48888899999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=2.3e-11  Score=112.80  Aligned_cols=228  Identities=12%  Similarity=0.072  Sum_probs=139.2

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEec---CCeEEEEeCCCCcccccccccCccccceeeec
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQ---DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFM  192 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  192 (437)
                      .|.+||......+.+.      .+...+.+..|+|++  |+..+.   +..|.+||+.+++.....              
T Consensus       185 ~l~i~D~~g~~~~~lt------~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~--------------  244 (433)
T PRK04922        185 ALQVADSDGYNPQTIL------RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA--------------  244 (433)
T ss_pred             EEEEECCCCCCceEee------cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec--------------
Confidence            6999998764333322      366789999999775  666653   346999999876532211              


Q ss_pred             CCCCeeEEeeccceeeecCCCcEEEEEeCC--CeE-EEEECCC--cEEEEECCCcceEEEeecccccEEEEEEecCCe-E
Q 013717          193 LPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLI-YSVSWDK--SLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-V  266 (437)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l-~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l  266 (437)
                                       ...+...+..|+|  +.+ ++.+.+|  .|++||+.+++.. .+..+.......+|+|||+ +
T Consensus       245 -----------------~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l  306 (433)
T PRK04922        245 -----------------SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSI  306 (433)
T ss_pred             -----------------cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEE
Confidence                             1223344677887  445 4555555  5999999887653 4444555567889999998 6


Q ss_pred             EEEeC-CCe--EEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC---cEEEEECCCCccceEEeeeec
Q 013717          267 YTGSA-DRK--IRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR---SILVWDREDSANHMVVTGALR  340 (437)
Q Consensus       267 ~~~~~-dg~--v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~  340 (437)
                      +..+. +|.  |.++|+..+.     ...+..........+|+|||++|+..+.++   .|.+||+.+++.. .+.   .
T Consensus       307 ~f~sd~~g~~~iy~~dl~~g~-----~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt---~  377 (433)
T PRK04922        307 YFTSDRGGRPQIYRVAASGGS-----AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT---P  377 (433)
T ss_pred             EEEECCCCCceEEEEECCCCC-----eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC---C
Confidence            66553 455  5555554322     112222233445789999999998765443   6999999776532 111   1


Q ss_pred             ccccceEEEEeeCCEEEEEeCC---CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717          341 GHGKAILCLINVAGLLMSGSAD---RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT  396 (437)
Q Consensus       341 ~~~~~i~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~  396 (437)
                      +....-..++.++++|+..+.+   +.|.++++...    ....+..+.+.+...+|+|
T Consensus       378 ~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~----~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        378 GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR----VRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEEcccCCCCCCCCccCC
Confidence            1112223555666666655543   35777777542    3444555566777777876

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.47  E-value=2.5e-10  Score=102.26  Aligned_cols=269  Identities=13%  Similarity=0.129  Sum_probs=160.2

Q ss_pred             CCEEEEEe-cC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCc
Q 013717          108 HNFLYAAS-SH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPT  183 (437)
Q Consensus       108 ~~~l~s~~-~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  183 (437)
                      +++++..- .+ .|.|.|..+  .+.+..+.   .....-..+.+++++  ++.++.||.|.++|+.+.+....+.    
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t--~~~~~~i~---~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~----   75 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGAT--NKVVARIP---TGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK----   75 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT---SEEEEEE----STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----
T ss_pred             ccEEEEEecCCCEEEEEECCC--CeEEEEEc---CCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe----
Confidence            45554444 44 999999998  44555552   122233446678754  7778899999999999988665544    


Q ss_pred             cccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE-CCCcEEEEECCCcceEEEeecc-------cc
Q 013717          184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS-WDKSLKIWRASDLRCLESIKAH-------ED  253 (437)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-------~~  253 (437)
                                                 -.....++++++  ++++++. .++.+.++|.++.+.++.+...       ..
T Consensus        76 ---------------------------~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~  128 (369)
T PF02239_consen   76 ---------------------------VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPES  128 (369)
T ss_dssp             ----------------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS--
T ss_pred             ---------------------------cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCC
Confidence                                       334567788877  7777664 6899999999999999887632       34


Q ss_pred             cEEEEEEecCCe-EEEEeC-CCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE-eCCCcEEEEECCCCc
Q 013717          254 AVNAVAVSAGGT-VYTGSA-DRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG-ACDRSILVWDREDSA  330 (437)
Q Consensus       254 ~v~~~~~~~~~~-l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~  330 (437)
                      .+.++..+|... ++..-. .+.|-+.|.....   .................|+|++++++++ ..++.|-++|.++.+
T Consensus       129 Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~---~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k  205 (369)
T PF02239_consen  129 RVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK---NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK  205 (369)
T ss_dssp             -EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS---CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred             CceeEEecCCCCEEEEEEccCCeEEEEEecccc---ccceeeecccccccccccCcccceeeecccccceeEEEeeccce
Confidence            677888888777 655555 4888888765432   1222233345667889999999987664 557789999998765


Q ss_pred             cceEEeeeecccccceEEE-----------EeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCC
Q 013717          331 NHMVVTGALRGHGKAILCL-----------INVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEG  399 (437)
Q Consensus       331 ~~~~~~~~~~~~~~~i~~~-----------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  399 (437)
                      ....+......|......+           ...+...++.-....+.+||....+   .++++....++ .-+..+|++.
T Consensus       206 ~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk---vv~~I~~~G~g-lFi~thP~s~  281 (369)
T PF02239_consen  206 LVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWK---VVKTIPTQGGG-LFIKTHPDSR  281 (369)
T ss_dssp             EEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTS---EEEEEE-SSSS---EE--TT-S
T ss_pred             EEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCe---EEEEEECCCCc-ceeecCCCCc
Confidence            4433222222333333322           2223333233333456677777644   78888877667 7788899986


Q ss_pred             CCceEEEEEe----cCCCcEEEEeeccCC
Q 013717          400 QNGVVSVFSG----SLDGEIRAWQVSVSC  424 (437)
Q Consensus       400 ~~~~~~l~s~----~~dg~i~iw~~~~~~  424 (437)
                           ++...    ...+.|.++|.++.+
T Consensus       282 -----~vwvd~~~~~~~~~v~viD~~tl~  305 (369)
T PF02239_consen  282 -----YVWVDTFLNPDADTVQVIDKKTLK  305 (369)
T ss_dssp             -----EEEEE-TT-SSHT-EEEEECCGTE
T ss_pred             -----cEEeeccCCCCCceEEEEECcCcc
Confidence                 56655    556899999998864

...

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.45  E-value=3.3e-11  Score=99.40  Aligned_cols=270  Identities=11%  Similarity=0.119  Sum_probs=171.4

Q ss_pred             eCCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCc
Q 013717          107 HHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPT  183 (437)
Q Consensus       107 ~~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  183 (437)
                      +|+++|+++.-.+.|=|.++  .+....+    ..-..|.-|.|.-+.   |.....|+.|.+|++...+-...+.    
T Consensus        19 ~g~yiAs~~~yrlviRd~~t--lq~~qlf----~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId----   88 (447)
T KOG4497|consen   19 CGNYIASLSRYRLVIRDSET--LQLHQLF----LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID----   88 (447)
T ss_pred             CCCeeeeeeeeEEEEeccch--hhHHHHH----HHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec----
Confidence            39999999987888888887  3333322    134677888888554   6667789999999998776444433    


Q ss_pred             cccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEE
Q 013717          184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAV  260 (437)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  260 (437)
                                                .....+.+++|+|   ..|.+...+-.|.+|.+.+.+.... +-.+..+..++|
T Consensus        89 --------------------------eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f  141 (447)
T KOG4497|consen   89 --------------------------EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAF  141 (447)
T ss_pred             --------------------------cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEE
Confidence                                      3556889999999   5666777899999999988665432 323455688899


Q ss_pred             ecCCe-EEEEeC------------------------------------CCeEEEecCCCCcccceeeEEeeCccccEEEE
Q 013717          261 SAGGT-VYTGSA------------------------------------DRKIRVWAKPFNEKRHALIATLEKHKSAVNAL  303 (437)
Q Consensus       261 ~~~~~-l~~~~~------------------------------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~  303 (437)
                      +|||+ .+..+.                                    +..+.+||--   ...+..  .....-.+..+
T Consensus       142 ~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~---Leykv~--aYe~~lG~k~v  216 (447)
T KOG4497|consen  142 HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV---LEYKVY--AYERGLGLKFV  216 (447)
T ss_pred             CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecch---hhheee--eeeeccceeEE
Confidence            99998 333331                                    2334445321   111111  11233568899


Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCcc----------------------------------------------------
Q 013717          304 ALSDDGTVLFSGACDRSILVWDREDSAN----------------------------------------------------  331 (437)
Q Consensus       304 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------------------------------------------------  331 (437)
                      +|+|.+++|+.|+.|+.++|.+--+-+.                                                    
T Consensus       217 ~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~Y  296 (447)
T KOG4497|consen  217 EWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIY  296 (447)
T ss_pred             EeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhh
Confidence            9999999999999999998865321000                                                    


Q ss_pred             ----ceEEeee------ecccccceEEEEeeCC--EEEEEeC--CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc
Q 013717          332 ----HMVVTGA------LRGHGKAILCLINVAG--LLMSGSA--DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE  397 (437)
Q Consensus       332 ----~~~~~~~------~~~~~~~i~~~~~~~~--~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~  397 (437)
                          .......      .......+--++|+.+  ++++-.+  -+.+-+||+...+   . ...-....+|....|.|.
T Consensus       297 E~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~---l-~avLiQk~piraf~WdP~  372 (447)
T KOG4497|consen  297 EQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK---L-HAVLIQKHPIRAFEWDPG  372 (447)
T ss_pred             hhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh---h-hhhhhhccceeEEEeCCC
Confidence                0000000      0111223344566655  5555443  2568999999754   3 333335678999999998


Q ss_pred             CCCCceEEEEEecCCCcEEEEeeccCCCCC
Q 013717          398 EGQNGVVSVFSGSLDGEIRAWQVSVSCPNS  427 (437)
Q Consensus       398 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  427 (437)
                      .+.     |+.+.....+++|.......+.
T Consensus       373 ~pr-----L~vctg~srLY~W~psg~~~V~  397 (447)
T KOG4497|consen  373 RPR-----LVVCTGKSRLYFWAPSGPRVVG  397 (447)
T ss_pred             Cce-----EEEEcCCceEEEEcCCCceEEe
Confidence            874     4444444579999887654333

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=2.2e-11  Score=107.62  Aligned_cols=249  Identities=13%  Similarity=0.160  Sum_probs=167.3

Q ss_pred             CCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717          140 SSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT  216 (437)
Q Consensus       140 ~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  216 (437)
                      .+...-+.|..++++   +++|...-.|++||+..-......                               .-...+.
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFER-------------------------------hlDae~V   97 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFER-------------------------------HLDAEVV   97 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeee-------------------------------cccccce
Confidence            577888999999776   888889999999999865321111                               1122222


Q ss_pred             E-EEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEE
Q 013717          217 G-LAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIAT  292 (437)
Q Consensus       217 ~-~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~  292 (437)
                      . .-.+.  ..++.-..|.+|.+...- |.. ..++ -...-..++++.-.. |++++....|.-+++..+    ..+..
T Consensus        98 ~feiLsDD~SK~v~L~~DR~IefHak~-G~h-y~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqG----rfL~P  170 (703)
T KOG2321|consen   98 DFEILSDDYSKSVFLQNDRTIEFHAKY-GRH-YRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG----RFLNP  170 (703)
T ss_pred             eEEEeccchhhheEeecCceeeehhhc-Cee-eeee-cCcCCccccccCCCccEEEeecCcceEEEEcccc----ccccc
Confidence            2 22232  444445566666554321 211 1111 122345566664443 777777788888866544    46677


Q ss_pred             eeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeee--ecccc-----cceEEEEeeCC--EEEEEeCCC
Q 013717          293 LEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGA--LRGHG-----KAILCLINVAG--LLMSGSADR  363 (437)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~-----~~i~~~~~~~~--~l~~~~~dg  363 (437)
                      +....+.++++..++...+|++|+.+|.|-.||.++......+...  ...|.     ..|+++.|.++  .+++|+.+|
T Consensus       171 ~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G  250 (703)
T KOG2321|consen  171 FETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG  250 (703)
T ss_pred             cccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC
Confidence            7767789999999999999999999999999999876544433221  12233     34899999875  899999999


Q ss_pred             cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCCCCeec
Q 013717          364 TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSSPLNL  432 (437)
Q Consensus       364 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  432 (437)
                      .+.|||++..+  ..+..-++..-+|..+.|.+.+.+   ..|+|.. ...++|||-.++++.......
T Consensus       251 ~v~iyDLRa~~--pl~~kdh~~e~pi~~l~~~~~~~q---~~v~S~D-k~~~kiWd~~~Gk~~asiEpt  313 (703)
T KOG2321|consen  251 SVLIYDLRASK--PLLVKDHGYELPIKKLDWQDTDQQ---NKVVSMD-KRILKIWDECTGKPMASIEPT  313 (703)
T ss_pred             cEEEEEcccCC--ceeecccCCccceeeecccccCCC---ceEEecc-hHHhhhcccccCCceeecccc
Confidence            99999999877  233344455668999999887543   2566654 468999999999875544333

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=5.6e-11  Score=109.80  Aligned_cols=231  Identities=13%  Similarity=0.077  Sum_probs=137.8

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC---CeEEEEeCCCCcccccccccCccccceeeec
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD---CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFM  192 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  192 (437)
                      .|.++|......+.+      ..+...+.+.+|+|++  |+..+.+   ..|.+||+.+++.....              
T Consensus       177 ~L~~~D~dG~~~~~l------~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~--------------  236 (427)
T PRK02889        177 QLQISDADGQNAQSA------LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA--------------  236 (427)
T ss_pred             EEEEECCCCCCceEe------ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee--------------
Confidence            677888765322222      2366789999999776  6655532   45999999877532211              


Q ss_pred             CCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEE-EEECCCcEEEEE--CCCcceEEEeecccccEEEEEEecCCe-E
Q 013717          193 LPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIY-SVSWDKSLKIWR--ASDLRCLESIKAHEDAVNAVAVSAGGT-V  266 (437)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~i~iwd--~~~~~~~~~~~~~~~~v~~~~~~~~~~-l  266 (437)
                                       ...+.+....|+|  +.|+ +.+.+|...||.  +..+. ...+..+........|+|||+ +
T Consensus       237 -----------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l  298 (427)
T PRK02889        237 -----------------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSI  298 (427)
T ss_pred             -----------------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEE
Confidence                             1223455778888  5555 567788766665  44443 444544555567788999998 6


Q ss_pred             EEEeC-CCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC---cEEEEECCCCccceEEeeeeccc
Q 013717          267 YTGSA-DRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR---SILVWDREDSANHMVVTGALRGH  342 (437)
Q Consensus       267 ~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~  342 (437)
                      +..+. +|...+|.+.......   ..+...........|+|||++|+..+.++   .|.+||+.+++... +.   ...
T Consensus       299 ~f~s~~~g~~~Iy~~~~~~g~~---~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt---~~~  371 (427)
T PRK02889        299 YFTSDRGGAPQIYRMPASGGAA---QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LT---DTT  371 (427)
T ss_pred             EEEecCCCCcEEEEEECCCCce---EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-cc---CCC
Confidence            65553 5677777654222111   11111223344678999999998776654   69999998765322 11   111


Q ss_pred             ccceEEEEeeCCEEEEEeCC-Cc--EEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc
Q 013717          343 GKAILCLINVAGLLMSGSAD-RT--VRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE  397 (437)
Q Consensus       343 ~~~i~~~~~~~~~l~~~~~d-g~--i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~  397 (437)
                      ...-..+++++..|+.++.+ |.  +.+.++. +.   ....+..+.+.+...+|+|-
T Consensus       372 ~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~---~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        372 RDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GR---IKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CccCceECCCCCEEEEEEecCCCEEEEEEECC-CC---ceEEeecCCCCCCCCccCCC
Confidence            22234556666666655543 33  5555553 22   34445556677777888873

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.42  E-value=5.3e-11  Score=98.78  Aligned_cols=242  Identities=19%  Similarity=0.296  Sum_probs=172.4

Q ss_pred             CCCCcccEEEEEEeCC--eEEEEecCCeEEEEe-CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCc
Q 013717          138 NDSSSGSVKSVTFCDG--KIFTAHQDCKIRVWQ-LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA  214 (437)
Q Consensus       138 ~~~h~~~v~~l~~~~~--~l~s~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (437)
                      ++||...|+....-+.  ++++.+.|.++++|- .+.++....+..                             .-..+
T Consensus        20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-----------------------------~mP~~   70 (404)
T KOG1409|consen   20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-----------------------------YMPSP   70 (404)
T ss_pred             hcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-----------------------------hCCCC
Confidence            3788888888777644  499999999999995 444444443331                             13457


Q ss_pred             EEEEEeCC--CeEEEEECCCcEEEEECC----CcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc
Q 013717          215 VTGLAVNN--GLIYSVSWDKSLKIWRAS----DLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH  287 (437)
Q Consensus       215 v~~~~~~~--~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~  287 (437)
                      ++++.+..  ..|+.|-..|++.-+.+.    ....++.+..|...+..+-|+..-. +++.+.|..+.---.+.+....
T Consensus        71 ~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg  150 (404)
T KOG1409|consen   71 CSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLG  150 (404)
T ss_pred             ceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCccc
Confidence            78888877  788888899999888654    3344555567899999999987666 8888888776543222222111


Q ss_pred             eeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcE
Q 013717          288 ALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTV  365 (437)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i  365 (437)
                      .....     ...+++.+.-.  +...|...|.|.+-.+....  ..+...+.+|...+.++.|++.  .|++|..|..+
T Consensus       151 ~Y~~~-----~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~--~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~v  221 (404)
T KOG1409|consen  151 GYNFE-----TPASALQFDAL--YAFVGDHSGQITMLKLEQNG--CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSV  221 (404)
T ss_pred             ceEee-----ccCCCCceeeE--EEEecccccceEEEEEeecC--CceEEEEcCcccceEEEEEcCCCcEEEeccccCce
Confidence            11111     11111222211  56677778888777665432  2355668899999999999976  99999999999


Q ss_pred             EEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          366 RIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       366 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      .+||+...+  .....+.+|.+.|..+...+.-     +.+++++.||.|.+|+++...
T Consensus       222 i~wdigg~~--g~~~el~gh~~kV~~l~~~~~t-----~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  222 IMWDIGGRK--GTAYELQGHNDKVQALSYAQHT-----RQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             EEEeccCCc--ceeeeeccchhhhhhhhhhhhh-----eeeeeccCCCeEEEEecccee
Confidence            999998655  4667889999999999887766     479999999999999987653

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.41  E-value=6.6e-09  Score=93.29  Aligned_cols=269  Identities=12%  Similarity=0.197  Sum_probs=162.8

Q ss_pred             eEEEEeC--CCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEec----CCeEEEEeCCCC-cccccccccCccccce
Q 013717          118 EINVYDR--TGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQ----DCKIRVWQLTPT-KHHKLKTTLPTVNDRL  188 (437)
Q Consensus       118 ~v~vwd~--~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~----dg~i~iwd~~~~-~~~~~~~~~~~~~~~~  188 (437)
                      .|.+|++  +++++..+...    ........|+++++.  |+++..    ++.|..|++... ..+..+...       
T Consensus        14 gI~~~~~d~~~g~l~~~~~~----~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~-------   82 (345)
T PF10282_consen   14 GIYVFRFDEETGTLTLVQTV----AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV-------   82 (345)
T ss_dssp             EEEEEEEETTTTEEEEEEEE----EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE-------
T ss_pred             cEEEEEEcCCCCCceEeeee----cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee-------
Confidence            6777776  55555555543    234556678887654  666655    578999988764 222222211       


Q ss_pred             eeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE-CCCcEEEEECCC-cceEEE---ee----------cc
Q 013717          189 LRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS-WDKSLKIWRASD-LRCLES---IK----------AH  251 (437)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~-~~~~~~---~~----------~~  251 (437)
                                          .........+++++  ++|+++. .+|.|.++++.. +.....   +.          ..
T Consensus        83 --------------------~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~  142 (345)
T PF10282_consen   83 --------------------PSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQE  142 (345)
T ss_dssp             --------------------EESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTS
T ss_pred             --------------------ccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccc
Confidence                                11334455788877  6777765 589999999987 433222   21          12


Q ss_pred             cccEEEEEEecCCe-EEE-EeCCCeEEEecCCCCcccceeeEEee-CccccEEEEEEccCCCEEEEEe-CCCcEEEEECC
Q 013717          252 EDAVNAVAVSAGGT-VYT-GSADRKIRVWAKPFNEKRHALIATLE-KHKSAVNALALSDDGTVLFSGA-CDRSILVWDRE  327 (437)
Q Consensus       252 ~~~v~~~~~~~~~~-l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~  327 (437)
                      .....++.++|+++ +++ .-....|.+|++............+. ......+.++|+|+++++++.. .++.|.+|++.
T Consensus       143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~  222 (345)
T PF10282_consen  143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD  222 (345)
T ss_dssp             STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence            34578999999998 444 34457899999875543232333332 3456789999999999886655 47889999998


Q ss_pred             CCccceEEeeeecc----cc--cceE--EEEeeCCEEEEEe-CCCcEEEeeCCC-CCCeeeeeeecCCCCCeeEEEEEcc
Q 013717          328 DSANHMVVTGALRG----HG--KAIL--CLINVAGLLMSGS-ADRTVRIWQRGS-DGRFGCLAVLEGHTKPVKSLTAVTE  397 (437)
Q Consensus       328 ~~~~~~~~~~~~~~----~~--~~i~--~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~l~~~~~  397 (437)
                      ..............    ..  ....  .+++++++|+++. .++.|.+|++.. ......+............++++|+
T Consensus       223 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~  302 (345)
T PF10282_consen  223 PSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPD  302 (345)
T ss_dssp             TTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TT
T ss_pred             ccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCC
Confidence            32222222222211    11  1233  4445566666554 567899999943 3334555555544555899999999


Q ss_pred             CCCCceEEEEEecCCCcEEEEeec
Q 013717          398 EGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       398 ~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      +..    ++++.-.++.|.+|+++
T Consensus       303 g~~----l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  303 GRY----LYVANQDSNTVSVFDID  322 (345)
T ss_dssp             SSE----EEEEETTTTEEEEEEEE
T ss_pred             CCE----EEEEecCCCeEEEEEEe
Confidence            863    55566678899999986

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.40  E-value=1.1e-10  Score=103.88  Aligned_cols=185  Identities=19%  Similarity=0.294  Sum_probs=143.6

Q ss_pred             CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe------C--------------Ce--EEEEecCCeE
Q 013717          108 HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC------D--------------GK--IFTAHQDCKI  164 (437)
Q Consensus       108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~------~--------------~~--l~s~~~dg~i  164 (437)
                      ..|+|....| .+++||...++.  ...+.....-++..++..|.      |              +.  ++-|...|.|
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~--~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQL--QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             hheEeecCCCCeEEEEEccCcee--eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4688888888 999999988533  33332222334455555552      1              22  7778888999


Q ss_pred             EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc
Q 013717          165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL  242 (437)
Q Consensus       165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~  242 (437)
                      .+|++..++....+..-                            .|.+.|+++.++.  ..|.+++.|+.+..|+...+
T Consensus        83 ~~ys~~~g~it~~~st~----------------------------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~  134 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTD----------------------------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK  134 (541)
T ss_pred             EEEEecCCeEEEEEecC----------------------------CCCCcceeeecccccCceEecCCceeEEEEecccc
Confidence            99999988765544432                            4999999999887  99999999999999999999


Q ss_pred             ceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccC-----CCEEEEE-
Q 013717          243 RCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD-----GTVLFSG-  315 (437)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~-  315 (437)
                      +.+..++.....+.+++++||+. +++++  +.|++||+.+.    +.+..|.+|.++|+++.|..+     |.+++++ 
T Consensus       135 ~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k----evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa  208 (541)
T KOG4547|consen  135 VIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETK----EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSA  208 (541)
T ss_pred             eeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCc----eEEEEecCCCcceEEEEEEEeccccccceeeecc
Confidence            99999999999999999999998 77765  79999987654    588999999999999999886     6666654 


Q ss_pred             eCCCcEEEEECCC
Q 013717          316 ACDRSILVWDRED  328 (437)
Q Consensus       316 ~~dg~i~i~d~~~  328 (437)
                      ..+..+.+|-++.
T Consensus       209 ~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  209 AAERGITVWVVEK  221 (541)
T ss_pred             ccccceeEEEEEc
Confidence            3455677887665

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=2.4e-10  Score=106.16  Aligned_cols=227  Identities=10%  Similarity=0.012  Sum_probs=139.5

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEec---CCeEEEEeCCCCcccccccccCccccceeeec
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQ---DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFM  192 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  192 (437)
                      .|.++|.++...+.+.      .|...+.+..|+|++  |+..+.   +..|.+||+.+++....               
T Consensus       183 ~l~~~d~dg~~~~~lt------~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l---------------  241 (435)
T PRK05137        183 RLAIMDQDGANVRYLT------DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELV---------------  241 (435)
T ss_pred             EEEEECCCCCCcEEEe------cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEe---------------
Confidence            7889998764333332      477789999999776  666543   46899999987753221               


Q ss_pred             CCCCeeEEeeccceeeecCCCcEEEEEeCC--CeE-EEEECCCc--EEEEECCCcceEEEeecccccEEEEEEecCCe-E
Q 013717          193 LPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLI-YSVSWDKS--LKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-V  266 (437)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l-~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l  266 (437)
                                      ..+.+.+....|+|  +.| ++.+.++.  |.+||+.+++. ..+..+........|+|||+ +
T Consensus       242 ----------------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i  304 (435)
T PRK05137        242 ----------------GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQI  304 (435)
T ss_pred             ----------------ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEE
Confidence                            12445566778888  454 45555655  77779887765 44544555677889999998 6


Q ss_pred             EEEeC-CC--eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC---CcEEEEECCCCccceEEeeeec
Q 013717          267 YTGSA-DR--KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD---RSILVWDREDSANHMVVTGALR  340 (437)
Q Consensus       267 ~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~  340 (437)
                      +..+. +|  .|.++|+....     ...+..+...+....|+|||++|+....+   ..|.+||+..+.. ..+.   .
T Consensus       305 ~f~s~~~g~~~Iy~~d~~g~~-----~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt---~  375 (435)
T PRK05137        305 VFESDRSGSPQLYVMNADGSN-----PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT---S  375 (435)
T ss_pred             EEEECCCCCCeEEEEECCCCC-----eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc---C
Confidence            66653 33  57777765332     22233334556678899999999876643   3688888765432 1111   1


Q ss_pred             ccccceEEEEeeCCEEEEEeC-C-----CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717          341 GHGKAILCLINVAGLLMSGSA-D-----RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT  396 (437)
Q Consensus       341 ~~~~~i~~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~  396 (437)
                      +....-..++++++.|+..+. .     ..++++|+..+.    ...+. ..+.+...+|+|
T Consensus       376 ~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~----~~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        376 GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN----EREVP-TPGDASDPAWSP  432 (435)
T ss_pred             CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc----eEEcc-CCCCccCcccCC
Confidence            122222345555666555443 2     257788887644    22333 233466667776

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.40  E-value=2.8e-11  Score=100.42  Aligned_cols=246  Identities=11%  Similarity=0.137  Sum_probs=163.1

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcce----eeeec-Ccc------------CCeEEEEee----CCEEEEEecC-
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCI----NSVQL-GHK------------LPIGCIAVH----HNFLYAASSH-  117 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~----~~~~~-~h~------------~~V~~l~~~----~~~l~s~~~d-  117 (437)
                      ..+.|.-....++++..+|.+.++..+....    ....+ .|.            ..|..+.|.    ...+.....| 
T Consensus        29 s~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdk  108 (433)
T KOG1354|consen   29 SAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDK  108 (433)
T ss_pred             eeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCc
Confidence            4678888999999999999999988755443    33333 443            467888886    3445555556 


Q ss_pred             eEEEEeCCCCceee------------------eeccc-------------cCCCCcccEEEEEEeCCe-EEEEecCCeEE
Q 013717          118 EINVYDRTGTTWTS------------------INTFN-------------DNDSSSGSVKSVTFCDGK-IFTAHQDCKIR  165 (437)
Q Consensus       118 ~v~vwd~~~~~~~~------------------~~~~~-------------~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~  165 (437)
                      +|++|.+.....+.                  +..+.             ...+|...|++|.++.+. .+..+.|=.|.
T Consensus       109 tiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRIN  188 (433)
T KOG1354|consen  109 TIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRIN  188 (433)
T ss_pred             ceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeee
Confidence            99999987532222                  00000             015789999999999776 55556688999


Q ss_pred             EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCc
Q 013717          166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDL  242 (437)
Q Consensus       166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~  242 (437)
                      +|+++-....-.+..+.                      ..-+..-..-|++..|+|   +.++..+..|+|++-|++..
T Consensus       189 LWnlei~d~sFnIVDIK----------------------P~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~  246 (433)
T KOG1354|consen  189 LWNLEIIDQSFNIVDIK----------------------PANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQS  246 (433)
T ss_pred             eccccccCCceeEEEcc----------------------ccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhh
Confidence            99987433211111110                      001112234577888998   88899999999999999843


Q ss_pred             ceE----EEe------------ecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCcc---------
Q 013717          243 RCL----ESI------------KAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHK---------  297 (437)
Q Consensus       243 ~~~----~~~------------~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~---------  297 (437)
                      .+-    ..+            ..--..|..+.|+++|+.+..-.--+|++||+.....   ++.++.-|.         
T Consensus       247 aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~---pv~t~~vh~~lr~kLc~l  323 (433)
T KOG1354|consen  247 ALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAK---PVETYPVHEYLRSKLCSL  323 (433)
T ss_pred             hhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCC---cceEEeehHhHHHHHHHH
Confidence            211    011            1123468899999999966555568999999865543   333333221         


Q ss_pred             ---ccE---EEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 013717          298 ---SAV---NALALSDDGTVLFSGACDRSILVWDREDSA  330 (437)
Q Consensus       298 ---~~i---~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  330 (437)
                         ..|   ..++|+.++.++++|+.....++|+...+.
T Consensus       324 YEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  324 YENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             hhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence               122   467889888999999999999999977654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.39  E-value=8.9e-10  Score=100.74  Aligned_cols=268  Identities=16%  Similarity=0.090  Sum_probs=163.2

Q ss_pred             EeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCc
Q 013717          105 AVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPT  183 (437)
Q Consensus       105 ~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  183 (437)
                      ...++.++.++.+ .|..+|..+++..-...+.     ..........++.++.++.+|.+..+|..+++.......   
T Consensus        62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~-----~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~---  133 (377)
T TIGR03300        62 AVAGGKVYAADADGTVVALDAETGKRLWRVDLD-----ERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKL---  133 (377)
T ss_pred             EEECCEEEEECCCCeEEEEEccCCcEeeeecCC-----CCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeecc---
Confidence            4457888888888 9999999886433222221     111123344566788899999999999988875443321   


Q ss_pred             cccceeeecCCCCeeEEeeccceeeecCCCcEE-EEEeCCCeEEEEECCCcEEEEECCCcceEEEeecccccEE-----E
Q 013717          184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT-GLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVN-----A  257 (437)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-----~  257 (437)
                                                  ...+. ......+.++.+..+|.|..||.++++.+..+......+.     +
T Consensus       134 ----------------------------~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~s  185 (377)
T TIGR03300       134 ----------------------------SSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSAS  185 (377)
T ss_pred             ----------------------------CceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCC
Confidence                                        11111 1122336777888899999999999998877653322111     1


Q ss_pred             EEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCcccc---EEEEEEcc--CCCEEEEEeCCCcEEEEECCCCccc
Q 013717          258 VAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSA---VNALALSD--DGTVLFSGACDRSILVWDREDSANH  332 (437)
Q Consensus       258 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~---i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~  332 (437)
                      ... .++.++.+..+|.+..+|.+++...++...........   ...+.-+|  .+..+++++.+|.++.||.++++..
T Consensus       186 p~~-~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~  264 (377)
T TIGR03300       186 PVI-ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVL  264 (377)
T ss_pred             CEE-ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEE
Confidence            112 24567888889999999987665333211000000000   00111111  3557888889999999999988754


Q ss_pred             eEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCC-CCCeeEEEEEccCCCCceEEEEEecC
Q 013717          333 MVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGH-TKPVKSLTAVTEEGQNGVVSVFSGSL  411 (437)
Q Consensus       333 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~l~s~~~  411 (437)
                      ....  .    .........++.+++++.||.+..+|..+++   .+...... ..........  ++     .|+.++.
T Consensus       265 W~~~--~----~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~---~~W~~~~~~~~~~ssp~i~--g~-----~l~~~~~  328 (377)
T TIGR03300       265 WKRD--A----SSYQGPAVDDNRLYVTDADGVVVALDRRSGS---ELWKNDELKYRQLTAPAVV--GG-----YLVVGDF  328 (377)
T ss_pred             Eeec--c----CCccCceEeCCEEEEECCCCeEEEEECCCCc---EEEccccccCCccccCEEE--CC-----EEEEEeC
Confidence            4332  1    1123344567788888999999999998876   33322111 1112222222  22     6888999


Q ss_pred             CCcEEEEeeccCCC
Q 013717          412 DGEIRAWQVSVSCP  425 (437)
Q Consensus       412 dg~i~iw~~~~~~~  425 (437)
                      ||.|+++|..+++.
T Consensus       329 ~G~l~~~d~~tG~~  342 (377)
T TIGR03300       329 EGYLHWLSREDGSF  342 (377)
T ss_pred             CCEEEEEECCCCCE
Confidence            99999999887764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.39  E-value=6.7e-10  Score=99.52  Aligned_cols=308  Identities=11%  Similarity=0.088  Sum_probs=171.1

Q ss_pred             cccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEE
Q 013717           72 QKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKS  147 (437)
Q Consensus        72 ~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~  147 (437)
                      .+...++.+.+.|.... +.+..+ .....-..+.|+  |+++++++.| .|.++|+.++  +.+.++.    -......
T Consensus        10 V~~~~~~~v~viD~~t~-~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--~~v~~i~----~G~~~~~   82 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATN-KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG--KVVATIK----VGGNPRG   82 (369)
T ss_dssp             EEEGGGTEEEEEETTT--SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS--SEEEEEE-----SSEEEE
T ss_pred             EEecCCCEEEEEECCCC-eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc--cEEEEEe----cCCCcce
Confidence            34566889999987764 444444 322333445676  8999999999 9999999995  4555552    3455788


Q ss_pred             EEEeCCe--EE-EEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--
Q 013717          148 VTFCDGK--IF-TAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--  222 (437)
Q Consensus       148 l~~~~~~--l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--  222 (437)
                      +++++++  ++ +.-.++.+.++|.++.+..+.+.......                       ......+.++..++  
T Consensus        83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~-----------------------~~~~~Rv~aIv~s~~~  139 (369)
T PF02239_consen   83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV-----------------------DGPESRVAAIVASPGR  139 (369)
T ss_dssp             EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T-----------------------TTS---EEEEEE-SSS
T ss_pred             EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccc-----------------------cccCCCceeEEecCCC
Confidence            9998654  44 44578999999999877655443211000                       01334666776655  


Q ss_pred             C-eEEEEECCCcEEEEECCCcceEE-EeecccccEEEEEEecCCe-E-EEEeCCCeEEEecCCCCcccceeeEEee----
Q 013717          223 G-LIYSVSWDKSLKIWRASDLRCLE-SIKAHEDAVNAVAVSAGGT-V-YTGSADRKIRVWAKPFNEKRHALIATLE----  294 (437)
Q Consensus       223 ~-~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~-l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~----  294 (437)
                      . ++++.-..+.|.+.|....+.+. .............|+|+++ + +....++.|.++|.....    ....+.    
T Consensus       140 ~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k----~v~~i~~g~~  215 (369)
T PF02239_consen  140 PEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK----LVALIDTGKK  215 (369)
T ss_dssp             SEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE----EEEEEE-SSS
T ss_pred             CEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccce----EEEEeecccc
Confidence            4 44444455889888987765433 2223455677899999998 4 445668899999876543    222221    


Q ss_pred             CccccEEEEE-------E--ccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEE----
Q 013717          295 KHKSAVNALA-------L--SDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSG----  359 (437)
Q Consensus       295 ~~~~~i~~~~-------~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~----  359 (437)
                      .|..++..+-       |  ...+...++.-....+.+||..+.+    ....+...... ..+..+  +.++++.    
T Consensus       216 p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk----vv~~I~~~G~g-lFi~thP~s~~vwvd~~~~  290 (369)
T PF02239_consen  216 PHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWK----VVKTIPTQGGG-LFIKTHPDSRYVWVDTFLN  290 (369)
T ss_dssp             BEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTS----EEEEEE-SSSS---EE--TT-SEEEEE-TT-
T ss_pred             ccccccccccCCCcceEEeeccccceecccccCCccccchhhcCe----EEEEEECCCCc-ceeecCCCCccEEeeccCC
Confidence            2333333221       1  1122333222233455667776554    33334434444 444444  4477777    


Q ss_pred             eCCCcEEEeeCCCCCCeeeeeeecCC-CCCeeEEEEEccCCCCceEEEEEecCCC-cEEEEeeccCCC
Q 013717          360 SADRTVRIWQRGSDGRFGCLAVLEGH-TKPVKSLTAVTEEGQNGVVSVFSGSLDG-EIRAWQVSVSCP  425 (437)
Q Consensus       360 ~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~l~s~~~dg-~i~iw~~~~~~~  425 (437)
                      ...++|.++|.++.+   .+.++... ...+..+.|++++.+    ..+|.-.++ .|.+||..+.+.
T Consensus       291 ~~~~~v~viD~~tl~---~~~~i~~~~~~~~~h~ef~~dG~~----v~vS~~~~~~~i~v~D~~Tl~~  351 (369)
T PF02239_consen  291 PDADTVQVIDKKTLK---VVKTITPGPGKRVVHMEFNPDGKE----VWVSVWDGNGAIVVYDAKTLKE  351 (369)
T ss_dssp             SSHT-EEEEECCGTE---EEE-HHHHHT--EEEEEE-TTSSE----EEEEEE--TTEEEEEETTTTEE
T ss_pred             CCCceEEEEECcCcc---eeEEEeccCCCcEeccEECCCCCE----EEEEEecCCCEEEEEECCCcEE
Confidence            456899999999864   44454322 235899999999975    555555444 899999887654

...

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.38  E-value=2.9e-10  Score=101.13  Aligned_cols=204  Identities=17%  Similarity=0.263  Sum_probs=142.6

Q ss_pred             eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCc
Q 013717          154 KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKS  233 (437)
Q Consensus       154 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~  233 (437)
                      .++....||.+++|+...++....+................   +.......+..  ....+...+.....++-|...|.
T Consensus         7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~---L~~~~s~~k~~--~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG---LSADYSPMKWL--SLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE---EEeccchHHHH--hHHHHhhccCCceEEEeecCCcc
Confidence            38888999999999999887666555332111100000000   00000000000  00001111112267888999999


Q ss_pred             EEEEECCCcceEEEee--cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCC
Q 013717          234 LKIWRASDLRCLESIK--AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGT  310 (437)
Q Consensus       234 i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  310 (437)
                      |.+|++..++....+.  .|.+.|+++.++.+-. |.+++.|+.+..|+..    ....+..+......+.+++.+|||.
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~----~~~~~~~~~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK----EKVIIRIWKEQKPLVSSLCISPDGK  157 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecc----cceeeeeeccCCCccceEEEcCCCC
Confidence            9999999999888876  6889999999887666 9999999999999654    3457778888888999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee-------CC-EEEEEeCCCcEEEeeCCC
Q 013717          311 VLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV-------AG-LLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       311 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~-~l~~~~~dg~i~iwd~~~  372 (437)
                      .+++++  +.|++||+++.+    ....+.+|.+.|.+++|.       |. +|.+...+..+.+|-+..
T Consensus       158 ~l~~as--~~ik~~~~~~ke----vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  158 ILLTAS--RQIKVLDIETKE----VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEecc--ceEEEEEccCce----EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            999986  689999998876    666789999999988875       23 444555566788887765

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.38  E-value=2.2e-10  Score=93.14  Aligned_cols=270  Identities=15%  Similarity=0.178  Sum_probs=173.8

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe-----CC-eEEEEecCCeEEEEeCCCCcccccccccCccccceeee
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC-----DG-KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRF  191 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-----~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  191 (437)
                      .+.+|+++..+.....++.  ......+..+.|.     .+ .++-+..+|.|.++..........+..+....-     
T Consensus        47 kl~Lys~~d~~~~~l~~~q--~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki-----  119 (339)
T KOG0280|consen   47 KLHLYSLEDMKLSPLDTLQ--CTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI-----  119 (339)
T ss_pred             ceEEEeecccccCccceee--eecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh-----
Confidence            5677777763332222221  2244567777776     12 167777889999988765443333322211000     


Q ss_pred             cCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcce--EEEeecccccEEEEEEecCCe--
Q 013717          192 MLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRC--LESIKAHEDAVNAVAVSAGGT--  265 (437)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~--  265 (437)
                                         ......++.|++  ..++++..+|.+.+-+......  ++.++.|+-+++-..|+....  
T Consensus       120 -------------------~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnl  180 (339)
T KOG0280|consen  120 -------------------SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNL  180 (339)
T ss_pred             -------------------hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCce
Confidence                               111234556665  7788889999999766655544  347889999999999986554  


Q ss_pred             EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEcc-CCCEEEEEeCCCcEEEEECCCCccceEEeeeeccccc
Q 013717          266 VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD-DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGK  344 (437)
Q Consensus       266 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  344 (437)
                      +.+|+.|+.+..||++...  .......+.|...|.+|.-+| .+.+|++|+.|..|++||.++-..+.. .   ..-.+
T Consensus       181 vytGgDD~~l~~~D~R~p~--~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~-~---~~v~G  254 (339)
T KOG0280|consen  181 VYTGGDDGSLSCWDIRIPK--TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF-K---AKVGG  254 (339)
T ss_pred             EEecCCCceEEEEEecCCc--ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc-c---Ccccc
Confidence            8999999999999998332  122333556888999999887 678999999999999999985443321 1   12347


Q ss_pred             ceEEEEeeCC----EEEEEeCCCcEEEeeCCCCCC--eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEec-CCCcEE-
Q 013717          345 AILCLINVAG----LLMSGSADRTVRIWQRGSDGR--FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGS-LDGEIR-  416 (437)
Q Consensus       345 ~i~~~~~~~~----~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~-~dg~i~-  416 (437)
                      .|..+.+++.    +|+++-..| .+|-+...+..  ...+...+.|.+-...-.|....     -+|+|++ .|..++ 
T Consensus       255 GVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~-----~~lATCsFYDk~~~~  328 (339)
T KOG0280|consen  255 GVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKD-----SFLATCSFYDKKIRQ  328 (339)
T ss_pred             ceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeecccccccc-----ceeeeeeccccceee
Confidence            7888888766    344444444 77777665331  11345556788777777774432     2688875 477766 


Q ss_pred             EEeeccCCC
Q 013717          417 AWQVSVSCP  425 (437)
Q Consensus       417 iw~~~~~~~  425 (437)
                      +|-.-++++
T Consensus       329 ~Wl~~t~~~  337 (339)
T KOG0280|consen  329 LWLHITGEP  337 (339)
T ss_pred             eeeeccCCc
Confidence            887766654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.37  E-value=7.1e-11  Score=95.94  Aligned_cols=150  Identities=8%  Similarity=0.130  Sum_probs=96.0

Q ss_pred             EEEEEecCCe-EE-EEe---------CCCeEEEecCCCCcccceeeEEeeC-ccccEEEEEEccCCCEEEEE--eCCCcE
Q 013717          256 NAVAVSAGGT-VY-TGS---------ADRKIRVWAKPFNEKRHALIATLEK-HKSAVNALALSDDGTVLFSG--ACDRSI  321 (437)
Q Consensus       256 ~~~~~~~~~~-l~-~~~---------~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~--~~dg~i  321 (437)
                      ..+.|+++|. |+ ...         .-|...+|.++....   ....+.- ..++|.+++|+|+|+.|++.  ..++.|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~---~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v   85 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI---PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKV   85 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC---ccceeeccCCCceEEEEECcCCCEEEEEEccCCccc
Confidence            3567788886 32 222         124456665543322   1222222 34579999999999987654  467899


Q ss_pred             EEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeC---CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717          322 LVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSA---DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT  396 (437)
Q Consensus       322 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~  396 (437)
                      .+||++ .+    ....+.  ...+..+.|+  |++|++++.   .|.|.+||.+..+   .+.... | ..++.++|+|
T Consensus        86 ~lyd~~-~~----~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~---~i~~~~-~-~~~t~~~WsP  153 (194)
T PF08662_consen   86 TLYDVK-GK----KIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK---KISTFE-H-SDATDVEWSP  153 (194)
T ss_pred             EEEcCc-cc----EeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE---Eeeccc-c-CcEEEEEEcC
Confidence            999996 22    222232  3344455555  568888764   4679999999644   555543 3 3578999999


Q ss_pred             cCCCCceEEEEEecC------CCcEEEEeeccCCC
Q 013717          397 EEGQNGVVSVFSGSL------DGEIRAWQVSVSCP  425 (437)
Q Consensus       397 ~~~~~~~~~l~s~~~------dg~i~iw~~~~~~~  425 (437)
                      ++.     +|+++..      |+.++||++.....
T Consensus       154 dGr-----~~~ta~t~~r~~~dng~~Iw~~~G~~l  183 (194)
T PF08662_consen  154 DGR-----YLATATTSPRLRVDNGFKIWSFQGRLL  183 (194)
T ss_pred             CCC-----EEEEEEeccceeccccEEEEEecCeEe
Confidence            995     6777753      88999999975543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=4.4e-10  Score=103.77  Aligned_cols=225  Identities=9%  Similarity=0.006  Sum_probs=137.8

Q ss_pred             eeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEe---cC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC
Q 013717           79 TINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAAS---SH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD  152 (437)
Q Consensus        79 ~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~---~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  152 (437)
                      .|.+++.+...... ...+...+.+.+|+  |+.|+..+   .+ .|.+|++.+++.+.+..+   .   +.+....|+|
T Consensus       180 ~l~~~d~dg~~~~~-lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~---~---~~~~~~~~SP  252 (429)
T PRK03629        180 ELRVSDYDGYNQFV-VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF---P---RHNGAPAFSP  252 (429)
T ss_pred             eEEEEcCCCCCCEE-eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC---C---CCcCCeEECC
Confidence            56666665433222 22566789999999  88887654   34 899999998765555443   2   2344678997


Q ss_pred             Ce--EEE-EecCC--eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeE
Q 013717          153 GK--IFT-AHQDC--KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLI  225 (437)
Q Consensus       153 ~~--l~s-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l  225 (437)
                      ++  |+. .+.+|  .|.+||+++++.....                               .+...+....|+|  +.|
T Consensus       253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt-------------------------------~~~~~~~~~~wSPDG~~I  301 (429)
T PRK03629        253 DGSKLAFALSKTGSLNLYVMDLASGQIRQVT-------------------------------DGRSNNTEPTWFPDSQNL  301 (429)
T ss_pred             CCCEEEEEEcCCCCcEEEEEECCCCCEEEcc-------------------------------CCCCCcCceEECCCCCEE
Confidence            76  543 34454  5888999876533221                               1334566788888  667


Q ss_pred             EEEECC-Cc--EEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCC---CeEEEecCCCCcccceeeEEeeCccc
Q 013717          226 YSVSWD-KS--LKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSAD---RKIRVWAKPFNEKRHALIATLEKHKS  298 (437)
Q Consensus       226 ~~~~~d-g~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~  298 (437)
                      +..+.+ +.  |.++|+.+++. ..+...........|+|||+ ++..+.+   ..|.+||+..+.     ...+... .
T Consensus       302 ~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-----~~~Lt~~-~  374 (429)
T PRK03629        302 AYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-----VQVLTDT-F  374 (429)
T ss_pred             EEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC-----eEEeCCC-C
Confidence            666543 44  55557766654 33333444566789999998 6655443   357888886543     1222211 2


Q ss_pred             cEEEEEEccCCCEEEEEeCCCc---EEEEECCCCccceEEeeeecccccceEEEEeeC
Q 013717          299 AVNALALSDDGTVLFSGACDRS---ILVWDREDSANHMVVTGALRGHGKAILCLINVA  353 (437)
Q Consensus       299 ~i~~~~~~~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~  353 (437)
                      ......|+|||++|+.++.++.   +.++++... ..    ..+.+|.+.+...+|++
T Consensus       375 ~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~-~~----~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        375 LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR-FK----ARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CCCCceECCCCCEEEEEEcCCCceEEEEEECCCC-Ce----EECccCCCCcCCcccCC
Confidence            2346789999999999888764   667777433 22    22344555565555554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=3.3e-10  Score=105.07  Aligned_cols=195  Identities=12%  Similarity=0.078  Sum_probs=121.2

Q ss_pred             CCCcEEEEEeCC--CeEEEEECC---CcEEEEECCCcceEEEeecccccEEEEEEecCCe-EE-EEeCCC--eEEEecCC
Q 013717          211 HGDAVTGLAVNN--GLIYSVSWD---KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY-TGSADR--KIRVWAKP  281 (437)
Q Consensus       211 ~~~~v~~~~~~~--~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~dg--~v~iwd~~  281 (437)
                      +...+.+..|+|  +.|+..+.+   ..|.+||+.+++... +....+...+.+|+|||+ ++ +.+.+|  .|.+||+.
T Consensus       202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~  280 (433)
T PRK04922        202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG  280 (433)
T ss_pred             CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC
Confidence            666788889988  677776633   469999998876543 333445556889999998 54 445555  58888886


Q ss_pred             CCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-CCc--EEEEECCCCccceEEeeeecccccceEEEEeeCCEEEE
Q 013717          282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-DRS--ILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMS  358 (437)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~  358 (437)
                      .+.     ...+..+.......+|+|||++|+..+. +|.  |+++|+.+++... +.  ..+....-..+++++++|+.
T Consensus       281 ~g~-----~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt--~~g~~~~~~~~SpDG~~Ia~  352 (433)
T PRK04922        281 SRQ-----LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LT--FQGNYNARASVSPDGKKIAM  352 (433)
T ss_pred             CCC-----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-ee--cCCCCccCEEECCCCCEEEE
Confidence            543     2334444445567899999998887654 444  6777776654221 11  22222222455666777776


Q ss_pred             EeCCC---cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC--CcEEEEeeccC
Q 013717          359 GSADR---TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD--GEIRAWQVSVS  423 (437)
Q Consensus       359 ~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d--g~i~iw~~~~~  423 (437)
                      .+.++   .|.+||+.+++   . ..+. +........|+|++..    ++++....  +.|.+++++..
T Consensus       353 ~~~~~~~~~I~v~d~~~g~---~-~~Lt-~~~~~~~p~~spdG~~----i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        353 VHGSGGQYRIAVMDLSTGS---V-RTLT-PGSLDESPSFAPNGSM----VLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             EECCCCceeEEEEECCCCC---e-EECC-CCCCCCCceECCCCCE----EEEEEecCCceEEEEEECCCC
Confidence            55433   69999998765   2 2332 2224556789999853    34444333  35777777554

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.35  E-value=4.7e-11  Score=97.80  Aligned_cols=272  Identities=14%  Similarity=0.232  Sum_probs=167.7

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCc---eeeeeccccCCCC------------cccEEEEEEeCCe---
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTT---WTSINTFNDNDSS------------SGSVKSVTFCDGK---  154 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~---~~~~~~~~~~~~h------------~~~v~~l~~~~~~---  154 (437)
                      ...+.|+++.|.  |.||++|..+ .|.+|..+...   .+....+   ++|            ...|..|.|..+.   
T Consensus        24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teF---Qshe~EFDYLkSleieEKin~I~w~~~t~r~  100 (460)
T COG5170          24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEF---QSHELEFDYLKSLEIEEKINAIEWFDDTGRN  100 (460)
T ss_pred             cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhh---cccccchhhhhhccHHHHhhheeeecCCCcc
Confidence            445789999999  9999999998 99999876532   2222222   333            3468888887332   


Q ss_pred             -EEEEecCCeEEEEeCCCCccccccc-cc------Ccc-----ccceeeecCCCCeeEEeeccceee-ecCCCcEEEEEe
Q 013717          155 -IFTAHQDCKIRVWQLTPTKHHKLKT-TL------PTV-----NDRLLRFMLPNSYVTVRRHKKKLW-IEHGDAVTGLAV  220 (437)
Q Consensus       155 -l~s~~~dg~i~iwd~~~~~~~~~~~-~~------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~  220 (437)
                       ++..+.|.+|++|.+.......... .+      +..     ...+...-.......+...+.+++ ..|...|+++.+
T Consensus       101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~  180 (460)
T COG5170         101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF  180 (460)
T ss_pred             eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence             8888899999999987542211100 00      000     000111111222333344444444 678889999999


Q ss_pred             CC-CeEEEEECCCcEEEEECCCcce---EEEeecc-----cccEEEEEEecCCe--EEEEeCCCeEEEecCCCCccccee
Q 013717          221 NN-GLIYSVSWDKSLKIWRASDLRC---LESIKAH-----EDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHAL  289 (437)
Q Consensus       221 ~~-~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~-----~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~  289 (437)
                      +. ...+..+.|-.|.+|++.-...   +..++.|     ..-|++..|+|...  +...+..|.|++-|++........
T Consensus       181 NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~  260 (460)
T COG5170         181 NSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS  260 (460)
T ss_pred             cCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence            88 5555556788899999864332   2222222     34688899999765  778888999999999843211111


Q ss_pred             e------------EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeec---------ccccce--
Q 013717          290 I------------ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALR---------GHGKAI--  346 (437)
Q Consensus       290 ~------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~~~~i--  346 (437)
                      .            .-+.+-...|..+.|+++|+++++-+. -+|+|||.+..+.+........         .....|  
T Consensus       261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifd  339 (460)
T COG5170         261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFD  339 (460)
T ss_pred             hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceee
Confidence            1            112223457889999999999988754 5799999987655433221100         011222  


Q ss_pred             -EEEEeeCC--EEEEEeCCCcEEEeeCC
Q 013717          347 -LCLINVAG--LLMSGSADRTVRIWQRG  371 (437)
Q Consensus       347 -~~~~~~~~--~l~~~~~dg~i~iwd~~  371 (437)
                       ..+.++|+  .+++|+..+..-||-..
T Consensus       340 kFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         340 KFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             eEEEEecCCcccccccccccceeeeccc
Confidence             34556655  78888888777777644

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.34  E-value=1.5e-11  Score=121.96  Aligned_cols=192  Identities=15%  Similarity=0.217  Sum_probs=150.8

Q ss_pred             eeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee-cccccEEEEEEecCCe-EEEEeCCCeEEEecCC
Q 013717          206 KLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKP  281 (437)
Q Consensus       206 ~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~  281 (437)
                      .....+-..|.++.-+|  .+.++|+.||.+++|....++.+..++ .....|+.+.|+.+|. +..+..||.+.+|...
T Consensus      2202 ~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2202 VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred             eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence            34455667788888888  899999999999999999888888876 3348899999999888 9999999999999764


Q ss_pred             CCcccceeeEEeeCccccEEEEEEccCCCEEEEEe---CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EE
Q 013717          282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA---CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LL  356 (437)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l  356 (437)
                           .++....+.|......+.|-.  ..+++++   .++.+.+||.--..... +..  ..|.+.++++++-|+  +|
T Consensus      2282 -----pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s-~v~--~~H~~gaT~l~~~P~~qll 2351 (2439)
T KOG1064|consen 2282 -----PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS-LVH--TCHDGGATVLAYAPKHQLL 2351 (2439)
T ss_pred             -----CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc-eee--eecCCCceEEEEcCcceEE
Confidence                 346677788999999999875  5677654   47899999976543332 222  668888888888776  99


Q ss_pred             EEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          357 MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       357 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      ++|+.+|.|++||++..+   ++..++.         +.. .     .++++|+..|.|+||++.....
T Consensus      2352 isggr~G~v~l~D~rqrq---l~h~~~~---------~~~-~-----~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQRQ---LRHTFQA---------LDT-R-----EYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred             EecCCcCcEEEeehHHHH---HHHHhhh---------hhh-h-----heeeccCcccceEEEEccccch
Confidence            999999999999999755   4444443         332 2     2899999999999999987643

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.33  E-value=1.7e-11  Score=108.07  Aligned_cols=286  Identities=16%  Similarity=0.209  Sum_probs=187.5

Q ss_pred             eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCc-----eeeeeccccCCCCcccEEEEEEeCCeEEEEec
Q 013717           90 INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTT-----WTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQ  160 (437)
Q Consensus        90 ~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~-----~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~  160 (437)
                      .....+ ||+..|.+++--  .+-+++++.| +|++|.++...     ..+..+   +..|+.+|..+.|..+.-..++.
T Consensus       726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfT---Y~aHkk~i~~igfL~~lr~i~Sc  802 (1034)
T KOG4190|consen  726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFT---YQAHKKPIHDIGFLADLRSIASC  802 (1034)
T ss_pred             eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeE---hhhccCcccceeeeeccceeeec
Confidence            344556 999999998764  7889999999 99999997631     112223   36799999999999776445566


Q ss_pred             CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe-CCCeEEEE-ECCCcEEEEE
Q 013717          161 DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV-NNGLIYSV-SWDKSLKIWR  238 (437)
Q Consensus       161 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~-~~dg~i~iwd  238 (437)
                      ||-|.+||.--+.........+.                         .+..+.|.|+.- +...++.| +...+|+++|
T Consensus       803 D~giHlWDPFigr~Laq~~dapk-------------------------~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~D  857 (1034)
T KOG4190|consen  803 DGGIHLWDPFIGRLLAQMEDAPK-------------------------EGAGGNIKCLENVDRHILIAGCSAESTVKLFD  857 (1034)
T ss_pred             cCcceeecccccchhHhhhcCcc-------------------------cCCCceeEecccCcchheeeeccchhhheeee
Confidence            89999999876654443332221                         123344555543 22444444 7889999999


Q ss_pred             CCCcceEEEee-----cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEE
Q 013717          239 ASDLRCLESIK-----AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVL  312 (437)
Q Consensus       239 ~~~~~~~~~~~-----~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  312 (437)
                      .+.++....++     +.+..+.+++..+.|. ++++-.+|.|.+.|.+++.    .+..++........++ .|..+.|
T Consensus       858 aRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~----vINswrpmecdllqla-apsdq~L  932 (1034)
T KOG4190|consen  858 ARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK----VINSWRPMECDLLQLA-APSDQAL  932 (1034)
T ss_pred             cccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc----eeccCCcccchhhhhc-CchhHHH
Confidence            99988777765     3456789999999998 9999999999999887654    5555554444444444 3455677


Q ss_pred             EEEeCCCcEEE-EECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCC-Ceeeeeeec--CCCCC
Q 013717          313 FSGACDRSILV-WDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDG-RFGCLAVLE--GHTKP  388 (437)
Q Consensus       313 ~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~--~h~~~  388 (437)
                      +....|.++.+ |-.-++....    .......+..-+..-|.-|+++.....+.+|.-.... ....+.+++  ...+.
T Consensus       933 ~~saldHslaVnWhaldgimh~----q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~ 1008 (1034)
T KOG4190|consen  933 AQSALDHSLAVNWHALDGIMHL----QDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGT 1008 (1034)
T ss_pred             HhhcccceeEeeehhcCCeeee----ccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCc
Confidence            77777888888 7665443211    1121222222333345567777777788888532211 111222332  23466


Q ss_pred             eeEEEEEccCCCCceEEEEEecCCCcEEE
Q 013717          389 VKSLTAVTEEGQNGVVSVFSGSLDGEIRA  417 (437)
Q Consensus       389 v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  417 (437)
                      .++++..|-..     -++.|...|.|.+
T Consensus      1009 lTala~LPLN~-----afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1009 LTALAPLPLNC-----AFLAGNEHGAIAL 1032 (1034)
T ss_pred             cceeeeccccc-----hhhccCCCCceee
Confidence            78888888763     4777888888876

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.33  E-value=2e-10  Score=93.26  Aligned_cols=127  Identities=18%  Similarity=0.289  Sum_probs=84.7

Q ss_pred             cEEEEECCC-cceEEEee-cccccEEEEEEecCCe-EEE--EeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEcc
Q 013717          233 SLKIWRASD-LRCLESIK-AHEDAVNAVAVSAGGT-VYT--GSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD  307 (437)
Q Consensus       233 ~i~iwd~~~-~~~~~~~~-~~~~~v~~~~~~~~~~-l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~  307 (437)
                      ...+|.++. ......+. ...++|.+++|+|+|. |++  |..++.|.+||++     .+.+..+  +...+..+.|+|
T Consensus        38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-----~~~i~~~--~~~~~n~i~wsP  110 (194)
T PF08662_consen   38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-----GKKIFSF--GTQPRNTISWSP  110 (194)
T ss_pred             eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-----ccEeEee--cCCCceEEEECC
Confidence            344554422 23344443 2345799999999998 544  4567899999985     2344444  356788999999


Q ss_pred             CCCEEEEEeC---CCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeC------CCcEEEeeCCC
Q 013717          308 DGTVLFSGAC---DRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSA------DRTVRIWQRGS  372 (437)
Q Consensus       308 ~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~------dg~i~iwd~~~  372 (437)
                      +|++|++++.   .|.|.+||.++.+.    .......  .+..+.|+  |.+|+++..      |+.++||+...
T Consensus       111 ~G~~l~~~g~~n~~G~l~~wd~~~~~~----i~~~~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  111 DGRFLVLAGFGNLNGDLEFWDVRKKKK----ISTFEHS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             CCCEEEEEEccCCCcEEEEEECCCCEE----eeccccC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence            9999999875   46799999985543    2222222  24455554  558887764      78899999874

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=1.2e-09  Score=101.48  Aligned_cols=196  Identities=12%  Similarity=0.048  Sum_probs=124.4

Q ss_pred             cCCCcEEEEEeCC--CeEEEEEC---CCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EE-EEeCCCe--EEEecC
Q 013717          210 EHGDAVTGLAVNN--GLIYSVSW---DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY-TGSADRK--IRVWAK  280 (437)
Q Consensus       210 ~~~~~v~~~~~~~--~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~dg~--v~iwd~  280 (437)
                      .+...+.+..|+|  +.|+..+.   +..|.+||+.+++.. .+..+.+.+...+|+|||+ |+ +.+.++.  |.+||+
T Consensus       199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~  277 (435)
T PRK05137        199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDL  277 (435)
T ss_pred             cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEEC
Confidence            4777899999998  66776653   468999999888653 3444666778899999998 54 5555655  666677


Q ss_pred             CCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-CC--cEEEEECCCCccceEEeeeecccccce--EEEEeeCCE
Q 013717          281 PFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-DR--SILVWDREDSANHMVVTGALRGHGKAI--LCLINVAGL  355 (437)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~  355 (437)
                      ....     ...+..+........|+|||+.|+..+. +|  .|+++|+..+.... +..    +...+  ..++++++.
T Consensus       278 ~~~~-----~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~----~~~~~~~~~~SpdG~~  347 (435)
T PRK05137        278 RSGT-----TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISF----GGGRYSTPVWSPRGDL  347 (435)
T ss_pred             CCCc-----eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eec----CCCcccCeEECCCCCE
Confidence            5432     2344445556677899999998887663 33  68888887654221 211    12222  345556667


Q ss_pred             EEEEeCC---CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCC-----cEEEEeeccCCC
Q 013717          356 LMSGSAD---RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDG-----EIRAWQVSVSCP  425 (437)
Q Consensus       356 l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg-----~i~iw~~~~~~~  425 (437)
                      |+....+   ..|.+||+..+.    ...+. ....+....|+|++..    ++++....+     .+.+++++.+..
T Consensus       348 ia~~~~~~~~~~i~~~d~~~~~----~~~lt-~~~~~~~p~~spDG~~----i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        348 IAFTKQGGGQFSIGVMKPDGSG----ERILT-SGFLVEGPTWAPNGRV----IMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             EEEEEcCCCceEEEEEECCCCc----eEecc-CCCCCCCCeECCCCCE----EEEEEccCCCCCcceEEEEECCCCce
Confidence            7665543   368888876543    12222 2234678899999853    444444332     577777766543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=7.4e-10  Score=102.42  Aligned_cols=193  Identities=12%  Similarity=0.063  Sum_probs=118.6

Q ss_pred             CCCcEEEEEeCC--CeEEEEECC---CcEEEEECCCcceEEEeecccccEEEEEEecCCe-EE-EEeCCCeEEEecCCCC
Q 013717          211 HGDAVTGLAVNN--GLIYSVSWD---KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY-TGSADRKIRVWAKPFN  283 (437)
Q Consensus       211 ~~~~v~~~~~~~--~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~dg~v~iwd~~~~  283 (437)
                      +...+.+.+|+|  +.|+..+.+   ..|.+||+.+++... +....+.+.+.+|+|||. |+ +.+.+|...+|.++..
T Consensus       194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~  272 (427)
T PRK02889        194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD  272 (427)
T ss_pred             CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence            666788899998  677766543   459999999887543 333445677899999998 55 5677888777765432


Q ss_pred             cccceeeEEeeCccccEEEEEEccCCCEEEEEeC-CCcEEEEEC--CCCccceEEeeeecccccceEEEEeeCCEEEEEe
Q 013717          284 EKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-DRSILVWDR--EDSANHMVVTGALRGHGKAILCLINVAGLLMSGS  360 (437)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~  360 (437)
                      ..   ....+..+........|+|||++|+..+. +|...+|.+  .++.. ..+.  ..+....-..+++++++|+..+
T Consensus       273 ~~---~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt--~~g~~~~~~~~SpDG~~Ia~~s  346 (427)
T PRK02889        273 GS---GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVT--FTGSYNTSPRISPDGKLLAYIS  346 (427)
T ss_pred             CC---CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEe--cCCCCcCceEECCCCCEEEEEE
Confidence            21   13334444455667889999998876554 456666654  33321 1111  2222122245666677877766


Q ss_pred             CCC---cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717          361 ADR---TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       361 ~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~  419 (437)
                      .++   .|.+||+.+++   . ..+..+ .......|+|++..    ++++....|.-.++-
T Consensus       347 ~~~g~~~I~v~d~~~g~---~-~~lt~~-~~~~~p~~spdg~~----l~~~~~~~g~~~l~~  399 (427)
T PRK02889        347 RVGGAFKLYVQDLATGQ---V-TALTDT-TRDESPSFAPNGRY----ILYATQQGGRSVLAA  399 (427)
T ss_pred             ccCCcEEEEEEECCCCC---e-EEccCC-CCccCceECCCCCE----EEEEEecCCCEEEEE
Confidence            554   69999998765   1 222222 23467899999863    445444454433443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.31  E-value=5.9e-10  Score=90.74  Aligned_cols=205  Identities=15%  Similarity=0.167  Sum_probs=138.9

Q ss_pred             cEEEEEeCCCeEEEEE------------CCCcEEEEECCCcceEE--Eee-cccccEEEEEEec---CCe--EEEEeCCC
Q 013717          214 AVTGLAVNNGLIYSVS------------WDKSLKIWRASDLRCLE--SIK-AHEDAVNAVAVSA---GGT--VYTGSADR  273 (437)
Q Consensus       214 ~v~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~--~~~-~~~~~v~~~~~~~---~~~--l~~~~~dg  273 (437)
                      ++.+++..++.|++|+            .-|.+.+|++...+...  +++ .....+..+.|..   ++.  ++-+...|
T Consensus        16 ~~C~l~~~~~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G   95 (339)
T KOG0280|consen   16 PICCLCHTRNVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARG   95 (339)
T ss_pred             CccccccccceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccc
Confidence            4444444445555553            34678889887765543  111 2344566677753   333  67778889


Q ss_pred             eEEEecCCCCcccceeeEEeeCc---cccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEE
Q 013717          274 KIRVWAKPFNEKRHALIATLEKH---KSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI  350 (437)
Q Consensus       274 ~v~iwd~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~  350 (437)
                      .|.+|......... .+..+...   .....++.|++.+..++++..+|.+.+-+....  .....+.+++|...+....
T Consensus        96 ~i~~~r~~~~~ss~-~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~--~le~vq~wk~He~E~Wta~  172 (339)
T KOG0280|consen   96 QIQLYRNDEDESSV-HLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEM--VLEKVQTWKVHEFEAWTAK  172 (339)
T ss_pred             eEEEEeeccceeee-eecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEeccee--eeeecccccccceeeeeee
Confidence            99999654322111 11111111   112457889999999999999999996665432  2223346788888887777


Q ss_pred             ee---CCEEEEEeCCCcEEEeeCCCCCCeeeeee-ecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec-cCCC
Q 013717          351 NV---AGLLMSGSADRTVRIWQRGSDGRFGCLAV-LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS-VSCP  425 (437)
Q Consensus       351 ~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~-~~~~  425 (437)
                      |+   ++++.+|++|+.+..||++..+  ..+.. .+-|...|.+|.-+|..+.    ++++|+.|-.|++||.+ .++|
T Consensus       173 f~~~~pnlvytGgDD~~l~~~D~R~p~--~~i~~n~kvH~~GV~SI~ss~~~~~----~I~TGsYDe~i~~~DtRnm~kP  246 (339)
T KOG0280|consen  173 FSDKEPNLVYTGGDDGSLSCWDIRIPK--TFIWHNSKVHTSGVVSIYSSPPKPT----YIATGSYDECIRVLDTRNMGKP  246 (339)
T ss_pred             cccCCCceEEecCCCceEEEEEecCCc--ceeeecceeeecceEEEecCCCCCc----eEEEeccccceeeeehhcccCc
Confidence            65   5699999999999999999544  24443 5679999999999988775    99999999999999998 5665


Q ss_pred             CC
Q 013717          426 NS  427 (437)
Q Consensus       426 ~~  427 (437)
                      ..
T Consensus       247 l~  248 (339)
T KOG0280|consen  247 LF  248 (339)
T ss_pred             cc
Confidence            43

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.31  E-value=1.5e-11  Score=122.03  Aligned_cols=185  Identities=19%  Similarity=0.319  Sum_probs=139.4

Q ss_pred             cEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717          144 SVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN  221 (437)
Q Consensus       144 ~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  221 (437)
                      .|.++.-+|..  .++|+.||.+++|....++........                             -...|+.+.|+
T Consensus      2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-----------------------------g~s~vtr~~f~ 2260 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-----------------------------GNSRVTRSRFN 2260 (2439)
T ss_pred             ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-----------------------------Ccchhhhhhhc
Confidence            34444444433  889999999999999888766555532                             22677778777


Q ss_pred             C--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEe---CCCeEEEecCCCCcccceeeEEeeCc
Q 013717          222 N--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGS---ADRKIRVWAKPFNEKRHALIATLEKH  296 (437)
Q Consensus       222 ~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~~  296 (437)
                      .  +.+..+..||.+.+|.+. .+.....+.|......+.|-.. .+++++   .++.+.+||....... .++.  ..|
T Consensus      2261 ~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~s-~~~tag~s~d~~n~~lwDtl~~~~~-s~v~--~~H 2335 (2439)
T KOG1064|consen 2261 HQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIGS-LLATAGRSSDNRNVCLWDTLLPPMN-SLVH--TCH 2335 (2439)
T ss_pred             ccCCceeeeccCCceeecccC-CcceeccccCCccccceeeeeh-hhhccccCCCCCcccchhcccCccc-ceee--eec
Confidence            6  888889999999999986 5667777889998999998762 255544   4789999997533321 2333  679


Q ss_pred             cccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717          297 KSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~  374 (437)
                      .+.++++++.|..++|++|+.+|.|++||++..+    +.+.+..       +. ...++++|+..|.|+||++....
T Consensus      2336 ~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq----l~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2336 DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ----LRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             CCCceEEEEcCcceEEEecCCcCcEEEeehHHHH----HHHHhhh-------hh-hhheeeccCcccceEEEEccccc
Confidence            9999999999999999999999999999997544    3322222       23 45599999999999999998754

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=3.1e-09  Score=94.17  Aligned_cols=309  Identities=12%  Similarity=0.145  Sum_probs=183.3

Q ss_pred             eeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEe----------cC-eEEEEeCCCCce
Q 013717           63 QTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAAS----------SH-EINVYDRTGTTW  129 (437)
Q Consensus        63 ~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~----------~d-~v~vwd~~~~~~  129 (437)
                      .++++...++ .+.+..+.+++.......+..+.-  .++++.|+  +.+|.+--          .. .+++|+++++. 
T Consensus        41 ~~S~~G~lfA-~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~-  116 (566)
T KOG2315|consen   41 AYSNNGRLFA-YSDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGV-  116 (566)
T ss_pred             EEcCCCcEEE-EEcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeeeccce-
Confidence            4444444444 667777888887665533333332  78999999  77776532          13 68899999842 


Q ss_pred             eeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCcc---------ccceeeecCCCC---
Q 013717          130 TSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTV---------NDRLLRFMLPNS---  196 (437)
Q Consensus       130 ~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~---  196 (437)
                       ....+.  ...+.. .+..|+.+. +++=-..+.+.+|+....+.....-.....         ....++.+.+..   
T Consensus       117 -~~s~~q--~k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGa  192 (566)
T KOG2315|consen  117 -QRSQIQ--KKMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGA  192 (566)
T ss_pred             -ehhhee--hhhhcC-cccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCC
Confidence             222221  112222 688888665 554455677999998764322211111111         111111111111   


Q ss_pred             --eeEEeeccc---------eeeecCCCcEEEEEeCC---CeEEEEE--CC---------CcEEEEECCCcceEEEeecc
Q 013717          197 --YVTVRRHKK---------KLWIEHGDAVTGLAVNN---GLIYSVS--WD---------KSLKIWRASDLRCLESIKAH  251 (437)
Q Consensus       197 --~~~~~~~~~---------~~~~~~~~~v~~~~~~~---~~l~~~~--~d---------g~i~iwd~~~~~~~~~~~~~  251 (437)
                        .+.+.....         +.|  ....-..+.|++   .+|+.++  -|         .++++++++...+...+. .
T Consensus       193 Pa~vri~~~~~~~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k  269 (566)
T KOG2315|consen  193 PASVRIYKYPEEGQHQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-K  269 (566)
T ss_pred             CcEEEEeccccccccchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-C
Confidence              111111000         000  011112455665   3444333  23         468888887444544443 5


Q ss_pred             cccEEEEEEecCCe---EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC---CCcEEEEE
Q 013717          252 EDAVNAVAVSAGGT---VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC---DRSILVWD  325 (437)
Q Consensus       252 ~~~v~~~~~~~~~~---l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d  325 (437)
                      .++|.++.|+|+++   ++.|.+=-.+.|||++.+     ++..  -..++-+++-|+|.|++|+.++.   .|.|-|||
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-----~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwD  342 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-----PVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWD  342 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-----EeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEEe
Confidence            78999999999996   566777889999998743     3333  35677889999999999988776   58899999


Q ss_pred             CCCCccceEEeeeecccccceEEEEeeCCEEEEEeC------CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccC
Q 013717          326 REDSANHMVVTGALRGHGKAILCLINVAGLLMSGSA------DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEE  398 (437)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  398 (437)
                      +.+.+    .+..+......+..++++|.+|+|++.      |+.++||+.....    +.... -......+.|-|..
T Consensus       343 v~n~K----~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~----l~~~~-f~sEL~qv~W~P~~  412 (566)
T KOG2315|consen  343 VPNRK----LIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL----LHEKM-FKSELLQVEWRPFN  412 (566)
T ss_pred             ccchh----hccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce----eehhh-hhHhHhheeeeecC
Confidence            98744    445556667778888888898888875      6789999988522    22111 11146666776543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.26  E-value=2.7e-09  Score=99.19  Aligned_cols=207  Identities=14%  Similarity=0.121  Sum_probs=126.4

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC---CeEEEEeCCCCcccccccccCccccceeeec
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD---CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFM  192 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  192 (437)
                      .|.++|......+.+.      .+...+....|++++  |+.+..+   ..|.+||+.+++.....              
T Consensus       171 ~l~~~d~~g~~~~~l~------~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~--------------  230 (417)
T TIGR02800       171 ELQVADYDGANPQTIT------RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA--------------  230 (417)
T ss_pred             eEEEEcCCCCCCEEee------cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee--------------
Confidence            6888888764333322      355678889999776  6655433   47999999876432211              


Q ss_pred             CCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEE-EEECCC--cEEEEECCCcceEEEeecccccEEEEEEecCCe-E
Q 013717          193 LPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIY-SVSWDK--SLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-V  266 (437)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l  266 (437)
                                       .+...+.+++|+|  +.|+ +.+.++  .|++||+.+++.. .+..+........|+|+++ |
T Consensus       231 -----------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l  292 (417)
T TIGR02800       231 -----------------SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSI  292 (417)
T ss_pred             -----------------cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEE
Confidence                             1334455678887  4454 444444  5888998877543 3333444455778999998 6


Q ss_pred             EEEeC-CC--eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC---cEEEEECCCCccceEEeeeec
Q 013717          267 YTGSA-DR--KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR---SILVWDREDSANHMVVTGALR  340 (437)
Q Consensus       267 ~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~  340 (437)
                      +..+. ++  .|.++|+....     ...+..+........|+|+|++|+.++.++   .|.+||+.++... .+..  .
T Consensus       293 ~~~s~~~g~~~iy~~d~~~~~-----~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~--~  364 (417)
T TIGR02800       293 AFTSDRGGSPQIYMMDADGGE-----VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTD--T  364 (417)
T ss_pred             EEEECCCCCceEEEEECCCCC-----EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccC--C
Confidence            65544 33  56667765332     223333455677889999999999888776   7899998874321 1111  1


Q ss_pred             ccccceEEEEeeCCEEEEEeCCC---cEEEeeCC
Q 013717          341 GHGKAILCLINVAGLLMSGSADR---TVRIWQRG  371 (437)
Q Consensus       341 ~~~~~i~~~~~~~~~l~~~~~dg---~i~iwd~~  371 (437)
                      .. ..-..+++++..|+..+.++   .+++.+..
T Consensus       365 ~~-~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       365 GL-DESPSFAPNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             CC-CCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence            11 11234566677666665543   35555544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=3.4e-08  Score=87.72  Aligned_cols=318  Identities=9%  Similarity=0.107  Sum_probs=179.9

Q ss_pred             CceeEEecCCCcceeeeecCc---cCCeEEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEe
Q 013717           77 DETINFSSASHLCINSVQLGH---KLPIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC  151 (437)
Q Consensus        77 dg~i~~~~~~~~~~~~~~~~h---~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~  151 (437)
                      .-.+.+|...........+.+   ..++...+++  |+++|.+..+.++|++.....  .+.+.     ....+.++.|+
T Consensus        10 Se~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~--~~lt~-----~~~~~~~L~fS   82 (566)
T KOG2315|consen   10 SEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSDNQVVKVFEIATLK--VVLCV-----ELKKTYDLLFS   82 (566)
T ss_pred             cceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEcCCeEEEEEccCCc--EEEEe-----ccceeeeeeec
Confidence            334556665444444444444   4455666666  777777776699999998853  23332     12278899998


Q ss_pred             CCe--EEE-----EecC-----CeEEEEeCCCCcccccccccCccccceeeecCCCC---------ee--EEeeccceee
Q 013717          152 DGK--IFT-----AHQD-----CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNS---------YV--TVRRHKKKLW  208 (437)
Q Consensus       152 ~~~--l~s-----~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--~~~~~~~~~~  208 (437)
                      |-.  |.+     .-.+     -.+.+|+++++.....+..- ...+....+..++.         ..  .........-
T Consensus        83 P~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k-~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~  161 (566)
T KOG2315|consen   83 PKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKK-MQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH  161 (566)
T ss_pred             ccccccccccccccccCCCCCCCceeeeeeccceehhheehh-hhcCcccccccchhhhhhhhcceEEEEecCCccceee
Confidence            654  221     1122     34779999885322222111 11101111111111         11  1111111112


Q ss_pred             ecCCCcEEEEEeCC----CeEEE-----EECCCcEEEEECCCcceEEEe---ecccccEEEEEEecCCe--EEEEe----
Q 013717          209 IEHGDAVTGLAVNN----GLIYS-----VSWDKSLKIWRASDLRCLESI---KAHEDAVNAVAVSAGGT--VYTGS----  270 (437)
Q Consensus       209 ~~~~~~v~~~~~~~----~~l~~-----~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~--l~~~~----  270 (437)
                      .-|...|+.+.++|    ..+++     .+.-+.|+||.......-..+   .-....=..+.|++-|.  |+.++    
T Consensus       162 kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVD  241 (566)
T KOG2315|consen  162 KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVD  241 (566)
T ss_pred             eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeec
Confidence            33677888888887    34443     345677999987632211111   11222334577887776  33222    


Q ss_pred             -------CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEE--EeCCCcEEEEECCCCccceEEeeeecc
Q 013717          271 -------ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFS--GACDRSILVWDREDSANHMVVTGALRG  341 (437)
Q Consensus       271 -------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~  341 (437)
                             .+..+++.++...    .....+. ..++|.++.|+|+|+.+++  |-.-..+.|||++..     ....+. 
T Consensus       242 ktn~SYYGEq~Lyll~t~g~----s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-----~v~df~-  310 (566)
T KOG2315|consen  242 KTNASYYGEQTLYLLATQGE----SVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-----PVFDFP-  310 (566)
T ss_pred             CCCccccccceEEEEEecCc----eEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-----EeEeCC-
Confidence                   2346777766521    2222232 4789999999999987665  455778999998742     222222 


Q ss_pred             cccceEEEE--eeCCEEEEEeC---CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecC-----
Q 013717          342 HGKAILCLI--NVAGLLMSGSA---DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSL-----  411 (437)
Q Consensus       342 ~~~~i~~~~--~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~-----  411 (437)
                       .++-.++-  ++|++|+.++-   -|.|-|||+.+.+   ++..+..-.  -+-+.|+|++.     +++|+..     
T Consensus       311 -egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K---~i~~~~a~~--tt~~eW~PdGe-----~flTATTaPRlr  379 (566)
T KOG2315|consen  311 -EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK---LIAKFKAAN--TTVFEWSPDGE-----YFLTATTAPRLR  379 (566)
T ss_pred             -CCCccceEECCCCCEEEEeecCCCCCceEEEeccchh---hccccccCC--ceEEEEcCCCc-----EEEEEeccccEE
Confidence             23334444  45666666665   4789999999854   777776543  44578999995     5666653     


Q ss_pred             -CCcEEEEeeccCC
Q 013717          412 -DGEIRAWQVSVSC  424 (437)
Q Consensus       412 -dg~i~iw~~~~~~  424 (437)
                       |+.++||+.....
T Consensus       380 vdNg~KiwhytG~~  393 (566)
T KOG2315|consen  380 VDNGIKIWHYTGSL  393 (566)
T ss_pred             ecCCeEEEEecCce
Confidence             7889999987653

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.24  E-value=1.7e-10  Score=105.12  Aligned_cols=278  Identities=14%  Similarity=0.169  Sum_probs=184.3

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeeeecCc--cCCeEEEEee-----CCEEEEEecCeEEEEeCCCCceeee
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGH--KLPIGCIAVH-----HNFLYAASSHEINVYDRTGTTWTSI  132 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h--~~~V~~l~~~-----~~~l~s~~~d~v~vwd~~~~~~~~~  132 (437)
                      ..+...|+...++.++.-|.+.+ +++....+-.-+.|  .-.|-.+.|+     ...+++.+...-.+|++.......+
T Consensus        28 ~a~si~p~grdi~lAsr~gl~i~-dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aI  106 (1081)
T KOG0309|consen   28 NAVSINPSGRDIVLASRQGLYII-DLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAI  106 (1081)
T ss_pred             cceeeccccchhhhhhhcCeEEE-eccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccce
Confidence            45677888888888888775544 44444444444444  3346667777     3455555555888999876433333


Q ss_pred             eccccCCCCcccEEEEEEeCC---eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717          133 NTFNDNDSSSGSVKSVTFCDG---KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI  209 (437)
Q Consensus       133 ~~~~~~~~h~~~v~~l~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (437)
                      .-+  ..+|...|+.+.|.+.   -+++++.|-.+..||+++........                             .
T Consensus       107 ef~--lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-----------------------------~  155 (1081)
T KOG0309|consen  107 EFV--LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-----------------------------S  155 (1081)
T ss_pred             EEE--EecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-----------------------------e
Confidence            322  2589999999999854   49999999999999998764221111                             1


Q ss_pred             cCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc-ceEEEeecccccEEEEEEecCC--eEEEEeCCCeEEEecCCCCc
Q 013717          210 EHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL-RCLESIKAHEDAVNAVAVSAGG--TVYTGSADRKIRVWAKPFNE  284 (437)
Q Consensus       210 ~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~  284 (437)
                      .-......++|+-  ..+.+.+..+.|++||.+.+ .++..+++|...|+.++|..--  .+++.+.||+|+.||.....
T Consensus       156 ~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt  235 (1081)
T KOG0309|consen  156 SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST  235 (1081)
T ss_pred             cccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence            1233445667764  45555677788999999876 5677888888899999987643  39999999999999986544


Q ss_pred             ccceeeEEeeCccccEEEEEEccCC--CEEEEEeCCCcEEEEECCCCc------cceEEeeeecccccceEEEEeeC---
Q 013717          285 KRHALIATLEKHKSAVNALALSDDG--TVLFSGACDRSILVWDREDSA------NHMVVTGALRGHGKAILCLINVA---  353 (437)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~~~~i~~~~~~~---  353 (437)
                      ...+..   .....+|..-.+.|-|  .++.---.+..+.+++-+...      ......+.+.||...|..+.|..   
T Consensus       236 ~e~~~~---vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e  312 (1081)
T KOG0309|consen  236 TESKRT---VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKE  312 (1081)
T ss_pred             ccccee---ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccc
Confidence            333222   2245667777777743  333332223355555444321      12235667889999887766531   


Q ss_pred             ---C------EEEEEeCCCcEEEeeCCC
Q 013717          354 ---G------LLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       354 ---~------~l~~~~~dg~i~iwd~~~  372 (437)
                         +      .|+|=+.|..+++|-+.+
T Consensus       313 ~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  313 CDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             ccCCCCccceeEEEeecCCceEeeeccH
Confidence               1      899999999999998765

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.23  E-value=2.4e-07  Score=83.30  Aligned_cols=275  Identities=15%  Similarity=0.158  Sum_probs=160.9

Q ss_pred             CceeEEecCCCcceeee---ecCccCCeEEEEee--CCEEEEEec----C-eEEEEeCCC--CceeeeeccccCCCCccc
Q 013717           77 DETINFSSASHLCINSV---QLGHKLPIGCIAVH--HNFLYAASS----H-EINVYDRTG--TTWTSINTFNDNDSSSGS  144 (437)
Q Consensus        77 dg~i~~~~~~~~~~~~~---~~~h~~~V~~l~~~--~~~l~s~~~----d-~v~vwd~~~--~~~~~~~~~~~~~~h~~~  144 (437)
                      .+.|..++.+.....+.   ...-......|+++  +++|++...    + .|..|++..  +.+..+....   .....
T Consensus        12 ~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~---~~g~~   88 (345)
T PF10282_consen   12 GGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP---SGGSS   88 (345)
T ss_dssp             STEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE---ESSSC
T ss_pred             CCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec---cCCCC
Confidence            35677777632222222   22344555667776  888888876    3 888888776  4555555542   23456


Q ss_pred             EEEEEEeCCe--EEEEe-cCCeEEEEeCCCC-cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe
Q 013717          145 VKSVTFCDGK--IFTAH-QDCKIRVWQLTPT-KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV  220 (437)
Q Consensus       145 v~~l~~~~~~--l~s~~-~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  220 (437)
                      ...++++++.  |+++. .+|.|.++++... ............                 ......-........++.+
T Consensus        89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~-----------------g~g~~~~rq~~~h~H~v~~  151 (345)
T PF10282_consen   89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHE-----------------GSGPNPDRQEGPHPHQVVF  151 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESE-----------------EEESSTTTTSSTCEEEEEE
T ss_pred             cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccC-----------------CCCCcccccccccceeEEE
Confidence            6788888665  55554 5899999999874 222211100000                 0000000113455778899


Q ss_pred             CC--CeEEEEE-CCCcEEEEECCCcc--eE--EEee-cccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceee
Q 013717          221 NN--GLIYSVS-WDKSLKIWRASDLR--CL--ESIK-AHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALI  290 (437)
Q Consensus       221 ~~--~~l~~~~-~dg~i~iwd~~~~~--~~--~~~~-~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~  290 (437)
                      +|  +++++.. ....|.+|++....  ..  ..+. .....-..++|+|+++  +++.-.++.|.+|++.......+.+
T Consensus       152 ~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~  231 (345)
T PF10282_consen  152 SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEI  231 (345)
T ss_dssp             -TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEE
Confidence            88  6666654 34579999987654  32  2222 3455688999999998  4566678999999887333333333


Q ss_pred             EEeeCc------cccEEEEEEccCCCEEEEEeC-CCcEEEEECCCCccceEEeeeecccccceEEEEe--eCCEEEEEe-
Q 013717          291 ATLEKH------KSAVNALALSDDGTVLFSGAC-DRSILVWDREDSANHMVVTGALRGHGKAILCLIN--VAGLLMSGS-  360 (437)
Q Consensus       291 ~~~~~~------~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~-  360 (437)
                      ......      ......|+++|||++|+++.. ++.|.+|++......................+.+  ++++|+++. 
T Consensus       232 ~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~  311 (345)
T PF10282_consen  232 QTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ  311 (345)
T ss_dssp             EEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred             EEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence            333321      125789999999998887664 6789999995432233333333322233444544  666777665 


Q ss_pred             CCCcEEEeeCC
Q 013717          361 ADRTVRIWQRG  371 (437)
Q Consensus       361 ~dg~i~iwd~~  371 (437)
                      .++.|.+|++.
T Consensus       312 ~s~~v~vf~~d  322 (345)
T PF10282_consen  312 DSNTVSVFDID  322 (345)
T ss_dssp             TTTEEEEEEEE
T ss_pred             CCCeEEEEEEe
Confidence            56789999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.22  E-value=1.2e-10  Score=106.20  Aligned_cols=287  Identities=16%  Similarity=0.225  Sum_probs=183.2

Q ss_pred             cCCeEEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC----e-EEEEecCCeEEEEeCC
Q 013717           98 KLPIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG----K-IFTAHQDCKIRVWQLT  170 (437)
Q Consensus        98 ~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~-l~s~~~dg~i~iwd~~  170 (437)
                      .+++.++..+  |+-+|.++.-.+.+-|+... ....+-+.  .-..-.|-.+.|++.    . +++.+ ...-.+|++.
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl~i~dld~p-~~ppr~l~--h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA   99 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGLYIIDLDDP-FTPPRWLH--HITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLA   99 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCeEEEeccCC-CCCceeee--ccCcchhcceecccCCCCceeEEecC-cchhhhhhhh
Confidence            4556666666  88888888776677777653 11222221  012234666777732    2 44444 3445588886


Q ss_pred             CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcc-eEE
Q 013717          171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLR-CLE  246 (437)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~-~~~  246 (437)
                      .......                           ..++-+|...|+++.|++   ..+++++.|-.+..||++... .+.
T Consensus       100 ~ss~~aI---------------------------ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~y  152 (1081)
T KOG0309|consen  100 KSSSNAI---------------------------EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFY  152 (1081)
T ss_pred             cCCccce---------------------------EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCccee
Confidence            4432111                           112347999999999987   899999999999999998764 444


Q ss_pred             EeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEcc-CCCEEEEEeCCCcEEEE
Q 013717          247 SIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD-DGTVLFSGACDRSILVW  324 (437)
Q Consensus       247 ~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~  324 (437)
                      .+..-......++|+-..- +.+.+..+.|.+||++.+.   .++..+++|...|+.++|.. ....+.+.+.||+|+.|
T Consensus       153 s~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs---~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw  229 (1081)
T KOG0309|consen  153 STSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS---TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW  229 (1081)
T ss_pred             eeecccccCceeeecccCcchhhhccCCceEEEeccCCC---cceEEecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence            5544555677889986554 7777888999999988765   46777788889999999876 33478899999999999


Q ss_pred             ECCCCccceEEeeeecccccceEE--EEeeCC--EEEEEeC---------CCcEEEeeCCCCCCeeeeeeecCCCCCeeE
Q 013717          325 DREDSANHMVVTGALRGHGKAILC--LINVAG--LLMSGSA---------DRTVRIWQRGSDGRFGCLAVLEGHTKPVKS  391 (437)
Q Consensus       325 d~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~--~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~  391 (437)
                      |.............   ...++..  ..+-++  ++.-.-.         +.....|+..++.  .++.++.||.+.|..
T Consensus       230 ~y~kSt~e~~~~vt---t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~--~pVh~F~GH~D~V~e  304 (1081)
T KOG0309|consen  230 DYSKSTTESKRTVT---TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLN--TPVHTFVGHDDVVLE  304 (1081)
T ss_pred             cccccccccceecc---ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCC--cceeeecCcchHHHH
Confidence            98764332221111   1112211  111122  1111111         2223334444433  588999999999988


Q ss_pred             EEEEccCC-----CCceEEEEEecCCCcEEEEeeccC
Q 013717          392 LTAVTEEG-----QNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       392 l~~~~~~~-----~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      ..|-..+.     ......|+|-+.|..+|+|.+...
T Consensus       305 FlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  305 FLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             HhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence            77754332     112346999999999999998754

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=1.9e-08  Score=93.65  Aligned_cols=229  Identities=11%  Similarity=0.029  Sum_probs=134.4

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC---CeEEEEeCCCCcccccccccCccccceeeec
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD---CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFM  192 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  192 (437)
                      .|.++|.+++..+.+.      .+...+....|+|++  |+..+.+   ..|.+|++.+++......             
T Consensus       180 ~l~~~d~~g~~~~~l~------~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-------------  240 (430)
T PRK00178        180 TLQRSDYDGARAVTLL------QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-------------  240 (430)
T ss_pred             EEEEECCCCCCceEEe------cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-------------
Confidence            5888888875333332      356788999999776  6555433   368899998775332211             


Q ss_pred             CCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEE-EEECCC--cEEEEECCCcceEEEeecccccEEEEEEecCCe-E
Q 013717          193 LPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIY-SVSWDK--SLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-V  266 (437)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l  266 (437)
                                        ..+.+....|+|  +.|+ +...+|  .|.+||+.+++.. .+..+........|+|||+ +
T Consensus       241 ------------------~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i  301 (430)
T PRK00178        241 ------------------FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTL  301 (430)
T ss_pred             ------------------CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEE
Confidence                              222334577887  5555 444455  5888899887654 3444555566788999998 6


Q ss_pred             EEEeC-CC--eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC-C--cEEEEECCCCccceEEeeeec
Q 013717          267 YTGSA-DR--KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD-R--SILVWDREDSANHMVVTGALR  340 (437)
Q Consensus       267 ~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~  340 (437)
                      +..+. +|  .|.++|+..+.     ...+...........|+|||++|+....+ +  .|.+||+.+++... +. .  
T Consensus       302 ~f~s~~~g~~~iy~~d~~~g~-----~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~--  372 (430)
T PRK00178        302 YFTSDRGGKPQIYKVNVNGGR-----AERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-D--  372 (430)
T ss_pred             EEEECCCCCceEEEEECCCCC-----EEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc-C--
Confidence            55543 34  46666664432     11111112233457899999998877653 2  58889988764321 21 1  


Q ss_pred             ccccceEEEEeeCCEEEEEeC-CC--cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc
Q 013717          341 GHGKAILCLINVAGLLMSGSA-DR--TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE  397 (437)
Q Consensus       341 ~~~~~i~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~  397 (437)
                      .....-..+++++..++..+. +|  .|.++++....    ...+..+.+.+...+|+|.
T Consensus       373 ~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~----~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        373 TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV----RLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc----eEECcCCCCCcCCCccCCC
Confidence            111112356666776555544 33  46666765422    2344445556777777763

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.19  E-value=7.2e-08  Score=84.76  Aligned_cols=320  Identities=10%  Similarity=0.125  Sum_probs=194.2

Q ss_pred             eeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-
Q 013717           79 TINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-  154 (437)
Q Consensus        79 ~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-  154 (437)
                      .|.++........-..+ .-.-++..+.++  |.+|++.....|.+|+-...  ..+..+     -...|..+.|+|++ 
T Consensus        12 ~i~~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~--~~l~~~-----~~~~V~~~~fSP~~k   84 (561)
T COG5354          12 VISVFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAGVECWGGPSK--AKLVRF-----RHPDVKYLDFSPNEK   84 (561)
T ss_pred             eEEEeecCccccccccccccCcchhheeecCcchheehhhccceEEccccch--hheeee-----ecCCceecccCcccc
Confidence            34433333333334444 477889999999  89998888779999998884  344444     23568889999776 


Q ss_pred             -EEEEec---------------CCeEEEEeCCCCcccccccccCcc--ccceeeecCCCCeeEEe-eccceeee------
Q 013717          155 -IFTAHQ---------------DCKIRVWQLTPTKHHKLKTTLPTV--NDRLLRFMLPNSYVTVR-RHKKKLWI------  209 (437)
Q Consensus       155 -l~s~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~------  209 (437)
                       |.+=+.               +..+.+||+.++............  ...+..+...+.+.+.. .....+..      
T Consensus        85 YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~  164 (561)
T COG5354          85 YLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIE  164 (561)
T ss_pred             eeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccc
Confidence             554432               335999999998766555443332  11233333333322211 11111110      


Q ss_pred             ---c---CCCcEEEEEeCC----CeEEE-----EECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEE----
Q 013717          210 ---E---HGDAVTGLAVNN----GLIYS-----VSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTG----  269 (437)
Q Consensus       210 ---~---~~~~v~~~~~~~----~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~----  269 (437)
                         -   ....|....++|    ..|+.     .+.++.+++|.+..+..+.+-.-.+..=..+.|.+.|. +++-    
T Consensus       165 ~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~  244 (561)
T COG5354         165 EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTH  244 (561)
T ss_pred             cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEe
Confidence               0   124566777777    23332     35678899999987776655443344445678888887 2221    


Q ss_pred             -------eCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE--eCCCcEEEEECCCCccceEEeeeec
Q 013717          270 -------SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG--ACDRSILVWDREDSANHMVVTGALR  340 (437)
Q Consensus       270 -------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~  340 (437)
                             ..+..+.+++++...     +.......++|...+|.|.++.+++.  -.+..+.++|++..     +...+.
T Consensus       245 ~ksnKsyfgesnLyl~~~~e~~-----i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-----l~~~~P  314 (561)
T COG5354         245 TKSNKSYFGESNLYLLRITERS-----IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-----LRFYFP  314 (561)
T ss_pred             eecccceeccceEEEEeecccc-----cceeccccccceeeeecccCCceeEEecccccceeecccccc-----eEEecC
Confidence                   123567777765221     22222567899999999988876654  47889999999864     221222


Q ss_pred             ccccceEEEEeeCCEEEEEeCC---CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEec------C
Q 013717          341 GHGKAILCLINVAGLLMSGSAD---RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGS------L  411 (437)
Q Consensus       341 ~~~~~i~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~------~  411 (437)
                      .....-..+.++..+++.++-|   |.+-+||....  +.++..+.+-.  .+-+.|+|++.     ++.+.-      .
T Consensus       315 e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r--f~~~~~~~~~n--~s~~~wspd~q-----F~~~~~ts~k~~~  385 (561)
T COG5354         315 EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR--FKVAGAFNGLN--TSYCDWSPDGQ-----FYDTDTTSEKLRV  385 (561)
T ss_pred             CcccccccccCcccEEEEecCCccccceEEeccCCc--eEEEEEeecCC--ceEeeccCCce-----EEEecCCCccccc
Confidence            2233334455566788877665   67999998863  35665666533  34567999884     454442      3


Q ss_pred             CCcEEEEeeccCC
Q 013717          412 DGEIRAWQVSVSC  424 (437)
Q Consensus       412 dg~i~iw~~~~~~  424 (437)
                      |..|.||++....
T Consensus       386 Dn~i~l~~v~g~~  398 (561)
T COG5354         386 DNSIKLWDVYGAK  398 (561)
T ss_pred             CcceEEEEecCch
Confidence            7899999998764

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.18  E-value=1.3e-07  Score=82.43  Aligned_cols=166  Identities=8%  Similarity=0.028  Sum_probs=121.5

Q ss_pred             CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEe--CCeEEEEecCC-eEEEEeCCCCcccccccccCcc
Q 013717          108 HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC--DGKIFTAHQDC-KIRVWQLTPTKHHKLKTTLPTV  184 (437)
Q Consensus       108 ~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~  184 (437)
                      |++++..|.+...|.+...+  - ...    -+|.+.|.-..+.  ++.++.|..|| .+-++|.++++......     
T Consensus       332 Gd~ia~VSRGkaFi~~~~~~--~-~iq----v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~-----  399 (668)
T COG4946         332 GDYIALVSRGKAFIMRPWDG--Y-SIQ----VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK-----  399 (668)
T ss_pred             CcEEEEEecCcEEEECCCCC--e-eEE----cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC-----
Confidence            89999999986666665543  1 222    2577788888876  44599999999 89999999886444332     


Q ss_pred             ccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEec
Q 013717          185 NDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA  262 (437)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  262 (437)
                                                .-+.|.++..++  ++++.+.....|.+.|+.+++....-+...+-|+.++|+|
T Consensus       400 --------------------------~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~  453 (668)
T COG4946         400 --------------------------DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP  453 (668)
T ss_pred             --------------------------CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC
Confidence                                      556889999988  6788888889999999999987666566778899999999


Q ss_pred             CCe-EEEEeCCC----eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe
Q 013717          263 GGT-VYTGSADR----KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA  316 (437)
Q Consensus       263 ~~~-l~~~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (437)
                      +++ +|-+.-+|    .|+++|+..+.     +.......+.=.+-+|.|||++|.--+
T Consensus       454 nsr~iAYafP~gy~tq~Iklydm~~~K-----iy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         454 NSRWIAYAFPEGYYTQSIKLYDMDGGK-----IYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             CceeEEEecCcceeeeeEEEEecCCCe-----EEEecCCcccccCcccCCCCcEEEEEe
Confidence            999 77776665    68899887543     222222233334567888999776543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=1.3e-08  Score=94.46  Aligned_cols=228  Identities=13%  Similarity=0.037  Sum_probs=129.7

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEec-CC--eEEEEeCCCCcccccccccCccccceeeec
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQ-DC--KIRVWQLTPTKHHKLKTTLPTVNDRLLRFM  192 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  192 (437)
                      .|.++|.+....+.+.      .+...+....|+|++  |+..+. ++  .|.+||+.+++.... ..            
T Consensus       199 ~l~i~d~dG~~~~~l~------~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~------------  259 (448)
T PRK04792        199 QLMIADYDGYNEQMLL------RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TS------------  259 (448)
T ss_pred             EEEEEeCCCCCceEee------cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cC------------
Confidence            5677787664333222      256688899999776  555443 33  588889887653221 11            


Q ss_pred             CCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEE-EEECCCc--EEEEECCCcceEEEeecccccEEEEEEecCCe-E
Q 013717          193 LPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIY-SVSWDKS--LKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-V  266 (437)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l  266 (437)
                                        .........|+|  +.|+ +...+|.  |.++|+.+++.. .+..+.......+|+||++ +
T Consensus       260 ------------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I  320 (448)
T PRK04792        260 ------------------FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSL  320 (448)
T ss_pred             ------------------CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEE
Confidence                              111223567887  5454 4566665  778898877643 3444555667889999998 5


Q ss_pred             EEEe-CCCe--EEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-CC--cEEEEECCCCccceEEeeeec
Q 013717          267 YTGS-ADRK--IRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-DR--SILVWDREDSANHMVVTGALR  340 (437)
Q Consensus       267 ~~~~-~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~  340 (437)
                      +..+ .++.  |.++|+..+.     ...+..........+|+|||++|+..+. ++  .|.++|+.+++... +.   .
T Consensus       321 ~f~s~~~g~~~Iy~~dl~~g~-----~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt---~  391 (448)
T PRK04792        321 IFTSERGGKPQIYRVNLASGK-----VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LT---S  391 (448)
T ss_pred             EEEECCCCCceEEEEECCCCC-----EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-cc---C
Confidence            5444 3444  5555554332     1112112222345789999998877655 33  45667877664221 11   1


Q ss_pred             ccccceEEEEeeCCEEEEEe-CCCc--EEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717          341 GHGKAILCLINVAGLLMSGS-ADRT--VRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT  396 (437)
Q Consensus       341 ~~~~~i~~~~~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~  396 (437)
                      .....-..+++++..|+..+ .+|.  +++++... .   ....+..+.+.+...+|+|
T Consensus       392 ~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G-~---~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        392 TRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG-R---FKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-C---ceEECcCCCCCcCCCccCC
Confidence            11111225666676555444 4443  66777643 3   3444555566677778877

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.16  E-value=9.7e-07  Score=74.78  Aligned_cols=276  Identities=11%  Similarity=0.149  Sum_probs=167.8

Q ss_pred             CceeEEecCCCcceeeee---cCccCCeEEEEee--CCEEEEEec---C-eEEEEeCCC--CceeeeeccccCCCCcccE
Q 013717           77 DETINFSSASHLCINSVQ---LGHKLPIGCIAVH--HNFLYAASS---H-EINVYDRTG--TTWTSINTFNDNDSSSGSV  145 (437)
Q Consensus        77 dg~i~~~~~~~~~~~~~~---~~h~~~V~~l~~~--~~~l~s~~~---d-~v~vwd~~~--~~~~~~~~~~~~~~h~~~v  145 (437)
                      +.-|..|+++.....+..   ..+.+..+=|+++  +++|.++-.   + .|.-|.++.  |++..+....   .-..+-
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~---~~g~~p   91 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT---LPGSPP   91 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc---cCCCCC
Confidence            456788888633222222   2788899999999  667777753   2 566666654  5555555442   223344


Q ss_pred             EEEEEeCCe--EEEEe-cCCeEEEEeCCCC-cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717          146 KSVTFCDGK--IFTAH-QDCKIRVWQLTPT-KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN  221 (437)
Q Consensus       146 ~~l~~~~~~--l~s~~-~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  221 (437)
                      +.+++++++  ++++. .-|.|.++-++.. ..............                 ... -......+....+.
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~-----------------~p~-~rQ~~~h~H~a~~t  153 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGS-----------------GPH-ERQESPHVHSANFT  153 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCC-----------------CCC-ccccCCccceeeeC
Confidence            888888665  55544 4588999998653 32222121110000                 000 00011226677788


Q ss_pred             C--CeEEEEEC-CCcEEEEECCCcceEEEee---cccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEe
Q 013717          222 N--GLIYSVSW-DKSLKIWRASDLRCLESIK---AHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATL  293 (437)
Q Consensus       222 ~--~~l~~~~~-dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~  293 (437)
                      |  +++++.+- --.|.+|++..++....-.   .....-..|.|+|+++  .++.-.+++|.+|.........+.++.+
T Consensus       154 P~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i  233 (346)
T COG2706         154 PDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI  233 (346)
T ss_pred             CCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeee
Confidence            8  56666642 2369999999776543221   3455678899999999  4556668999999887654444444433


Q ss_pred             eC------ccccEEEEEEccCCCEEEEEeC-CCcEEEEECCCCccceEEeeeeccccc--ceEEEEeeCCEEEEEeCC-C
Q 013717          294 EK------HKSAVNALALSDDGTVLFSGAC-DRSILVWDREDSANHMVVTGALRGHGK--AILCLINVAGLLMSGSAD-R  363 (437)
Q Consensus       294 ~~------~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~l~~~~~d-g  363 (437)
                      ..      .......|..++||++|.++.. ...|.+|.+........+......+..  .-..+..++++|+++..+ .
T Consensus       234 ~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd  313 (346)
T COG2706         234 DTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSD  313 (346)
T ss_pred             ccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCC
Confidence            21      2345778999999999998765 347888888765555555544444433  334455556777777664 4


Q ss_pred             cEEEeeCCCC
Q 013717          364 TVRIWQRGSD  373 (437)
Q Consensus       364 ~i~iwd~~~~  373 (437)
                      .|.+|.....
T Consensus       314 ~i~vf~~d~~  323 (346)
T COG2706         314 NITVFERDKE  323 (346)
T ss_pred             cEEEEEEcCC
Confidence            7999987653

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.16  E-value=8.4e-10  Score=88.32  Aligned_cols=135  Identities=18%  Similarity=0.257  Sum_probs=94.4

Q ss_pred             CcEEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEcc-C
Q 013717          232 KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD-D  308 (437)
Q Consensus       232 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~  308 (437)
                      +..++|+++..+.+..-......|.+++-+|...  +++|+.||.+-+||.+...   .+...+..|+.+|..+-|+| +
T Consensus       159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~---~p~S~l~ahk~~i~eV~FHpk~  235 (319)
T KOG4714|consen  159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA---MPVSLLKAHKAEIWEVHFHPKN  235 (319)
T ss_pred             cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc---chHHHHHHhhhhhhheeccCCC
Confidence            3456666654433222222334599999998665  8899999999999998553   34556778999999999999 6


Q ss_pred             CCEEEEEeCCCcEEEEECCCCcc--------------------ceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEe
Q 013717          309 GTVLFSGACDRSILVWDREDSAN--------------------HMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIW  368 (437)
Q Consensus       309 ~~~l~~~~~dg~i~i~d~~~~~~--------------------~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iw  368 (437)
                      +..|+++++||.+.-||..+.-.                    ...+...+......|..+...+..|++|+.-+.|+++
T Consensus       236 p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~  315 (319)
T KOG4714|consen  236 PEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLT  315 (319)
T ss_pred             chheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEe
Confidence            77999999999999999873100                    0111111222344567777778899999998888887


Q ss_pred             e
Q 013717          369 Q  369 (437)
Q Consensus       369 d  369 (437)
                      +
T Consensus       316 ~  316 (319)
T KOG4714|consen  316 R  316 (319)
T ss_pred             c
Confidence            5

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.16  E-value=1.9e-07  Score=85.81  Aligned_cols=300  Identities=10%  Similarity=0.055  Sum_probs=170.9

Q ss_pred             cccccCCCceeEEecCCCcceeeeec-CccC---------Ce-EEEEeeCCEEEEEecC-eEEEEeCCCCceeeeecccc
Q 013717           70 SLQKLSPDETINFSSASHLCINSVQL-GHKL---------PI-GCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFND  137 (437)
Q Consensus        70 ~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~---------~V-~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~  137 (437)
                      .+...+.+|.+..++.......-..- ....         .+ ..++..++.++.++.+ .+..+|.++++..=....  
T Consensus        71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~--  148 (394)
T PRK11138         71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV--  148 (394)
T ss_pred             EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC--
Confidence            34445566677666665433332221 1110         11 1234457777778777 999999988643222222  


Q ss_pred             CCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEE
Q 013717          138 NDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTG  217 (437)
Q Consensus       138 ~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  217 (437)
                         ...........++.++.+..++.+..+|.++++..........  .                   ....+...++  
T Consensus       149 ---~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~--~-------------------~~~~~~~sP~--  202 (394)
T PRK11138        149 ---AGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVP--S-------------------LTLRGESAPA--  202 (394)
T ss_pred             ---CCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCC--c-------------------ccccCCCCCE--
Confidence               1111122233466788888899999999999876544431100  0                   0000011111  


Q ss_pred             EEeCCCeEEEEECCCcEEEEECCCcceEEEeecccc-------cEEEEEEec---CCeEEEEeCCCeEEEecCCCCcccc
Q 013717          218 LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHED-------AVNAVAVSA---GGTVYTGSADRKIRVWAKPFNEKRH  287 (437)
Q Consensus       218 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~---~~~l~~~~~dg~v~iwd~~~~~~~~  287 (437)
                        ...+.++.+..+|.+..+|..+++.+........       ....+..+|   ++.++.++.+|.+..+|..++...+
T Consensus       203 --v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W  280 (394)
T PRK11138        203 --TAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVW  280 (394)
T ss_pred             --EECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEE
Confidence              1235677788899999999999887665431110       011111122   5667778889999999987665333


Q ss_pred             eeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEE
Q 013717          288 ALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRI  367 (437)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~i  367 (437)
                      +.    .  ......+..  ++..++.++.+|.++.+|..+++..+.... . . .....+....++.|+.++.||.|++
T Consensus       281 ~~----~--~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-~-~-~~~~~sp~v~~g~l~v~~~~G~l~~  349 (394)
T PRK11138        281 KR----E--YGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSD-L-L-HRLLTAPVLYNGYLVVGDSEGYLHW  349 (394)
T ss_pred             ee----c--CCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccc-c-C-CCcccCCEEECCEEEEEeCCCEEEE
Confidence            21    1  111112222  456788888999999999998865443211 1 1 1112223345778899999999999


Q ss_pred             eeCCCCCCeeeeeeecCCCCCeeE-EEEEccCCCCceEEEEEecCCCcEEEEee
Q 013717          368 WQRGSDGRFGCLAVLEGHTKPVKS-LTAVTEEGQNGVVSVFSGSLDGEIRAWQV  420 (437)
Q Consensus       368 wd~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~~~~~l~s~~~dg~i~iw~~  420 (437)
                      .|..+++   .+...+-....+.+ ..+ .++      .|+.++.||.|+.+++
T Consensus       350 ld~~tG~---~~~~~~~~~~~~~s~P~~-~~~------~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        350 INREDGR---FVAQQKVDSSGFLSEPVV-ADD------KLLIQARDGTVYAITR  393 (394)
T ss_pred             EECCCCC---EEEEEEcCCCcceeCCEE-ECC------EEEEEeCCceEEEEeC
Confidence            9999887   44444332223322 122 223      5888899999988764

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.16  E-value=4.7e-07  Score=76.67  Aligned_cols=267  Identities=9%  Similarity=0.170  Sum_probs=167.0

Q ss_pred             eEEEEeCCCC--ceeeeeccccCCCCcccEEEEEEeCCe--EEEEec---CCeEEEEeCCC--CcccccccccCccccce
Q 013717          118 EINVYDRTGT--TWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQ---DCKIRVWQLTP--TKHHKLKTTLPTVNDRL  188 (437)
Q Consensus       118 ~v~vwd~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~---dg~i~iwd~~~--~~~~~~~~~~~~~~~~~  188 (437)
                      -|.+|++.+.  +......    -.+.+.++-|+|+++.  |.++-.   +|.|..|.++.  ++....-...       
T Consensus        17 gI~v~~ld~~~g~l~~~~~----v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~-------   85 (346)
T COG2706          17 GIYVFNLDTKTGELSLLQL----VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT-------   85 (346)
T ss_pred             ceEEEEEeCcccccchhhh----ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc-------
Confidence            8999998853  2222222    3577889999999776  766644   57788887775  3322111111       


Q ss_pred             eeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE-CCCcEEEEECCC-cceE---EEeeccccc-------
Q 013717          189 LRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS-WDKSLKIWRASD-LRCL---ESIKAHEDA-------  254 (437)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~-~~~~---~~~~~~~~~-------  254 (437)
                                           ....+-+-+++++  ++++++. ..|.|.++-++. |...   ..+ .|.+.       
T Consensus        86 ---------------------~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~-~h~g~~p~~rQ~  143 (346)
T COG2706          86 ---------------------LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV-KHTGSGPHERQE  143 (346)
T ss_pred             ---------------------cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeee-ecCCCCCCcccc
Confidence                                 1222336777777  5777665 468899998865 3322   222 24443       


Q ss_pred             ---EEEEEEecCCe-EEEEe-CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-CCcEEEEECCC
Q 013717          255 ---VNAVAVSAGGT-VYTGS-ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-DRSILVWDRED  328 (437)
Q Consensus       255 ---v~~~~~~~~~~-l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~  328 (437)
                         +....+.|+++ +++.. .--.|.+|++..+.........+ ......+.|.|+|++++..+.++ +++|.+|....
T Consensus       144 ~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~  222 (346)
T COG2706         144 SPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP  222 (346)
T ss_pred             CCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence               88899999998 44433 24578999987444332222233 35567899999999998877665 89999999987


Q ss_pred             CccceEEeeee-------ccc-ccceEEEEeeCCEEEEEeC-CCcEEEeeCCCCC-CeeeeeeecCCCCCeeEEEEEccC
Q 013717          329 SANHMVVTGAL-------RGH-GKAILCLINVAGLLMSGSA-DRTVRIWQRGSDG-RFGCLAVLEGHTKPVKSLTAVTEE  398 (437)
Q Consensus       329 ~~~~~~~~~~~-------~~~-~~~i~~~~~~~~~l~~~~~-dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~  398 (437)
                      ........+.+       .+. ...-..+..+|.+|.++.. ...|-+|.+.... ....+.....+...-+...+.+.+
T Consensus       223 ~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g  302 (346)
T COG2706         223 AVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSG  302 (346)
T ss_pred             CCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCC
Confidence            43333222221       111 2223555666777777654 3478888887543 233444444555567888899888


Q ss_pred             CCCceEEEEEecCC-CcEEEEeeccC
Q 013717          399 GQNGVVSVFSGSLD-GEIRAWQVSVS  423 (437)
Q Consensus       399 ~~~~~~~l~s~~~d-g~i~iw~~~~~  423 (437)
                      .     +|+++..| ..|.+|.++..
T Consensus       303 ~-----~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         303 R-----FLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             C-----EEEEEccCCCcEEEEEEcCC
Confidence            5     56666654 57999987643

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.15  E-value=1.6e-08  Score=81.54  Aligned_cols=232  Identities=10%  Similarity=-0.017  Sum_probs=149.7

Q ss_pred             eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE---EEEeCCCeEEEEEC
Q 013717          154 KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT---GLAVNNGLIYSVSW  230 (437)
Q Consensus       154 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~~~~~~l~~~~~  230 (437)
                      .|+.|+.-|.+.+|...+.+....+..                             .|...|+   ..+-....+..++.
T Consensus        86 ~la~gG~~g~fd~~~~~tn~~h~~~cd-----------------------------~snn~v~~~~r~cd~~~~~~i~sn  136 (344)
T KOG4532|consen   86 TLADGGASGQFDLFACNTNDGHLYQCD-----------------------------VSNNDVTLVKRYCDLKFPLNIASN  136 (344)
T ss_pred             EEEeccccceeeeecccCcccceeeec-----------------------------ccccchhhhhhhcccccceeeccC
Confidence            488999999999999987653322211                             1222221   12222245667788


Q ss_pred             CCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeE-EeeCccccEEEEEEccC
Q 013717          231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIA-TLEKHKSAVNALALSDD  308 (437)
Q Consensus       231 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~  308 (437)
                      |.++++.++.-+..........-.+.+++++++++ +++.+....|-.|.++....  ..+. ........-.+..|+..
T Consensus       137 dht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se--y~~~~~~a~t~D~gF~~S~s~~  214 (344)
T KOG4532|consen  137 DHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE--YIENIYEAPTSDHGFYNSFSEN  214 (344)
T ss_pred             CcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccc--eeeeeEecccCCCceeeeeccC
Confidence            88888888765543333222223488999999999 88888899999998864432  2222 23334455678899999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCccceEEe-eeecccccceEEEEeeCC----EEEEEeCCCcEEEeeCCCCCCeeeeeeec
Q 013717          309 GTVLFSGACDRSILVWDREDSANHMVVT-GALRGHGKAILCLINVAG----LLMSGSADRTVRIWQRGSDGRFGCLAVLE  383 (437)
Q Consensus       309 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  383 (437)
                      ...+|++..||++.|||++....+.... .....|.+.+..+.|+..    +|+..-.-+.+.+-|+++....+.+....
T Consensus       215 ~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~  294 (344)
T KOG4532|consen  215 DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD  294 (344)
T ss_pred             cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc
Confidence            9999999999999999998765444332 223457888888888732    66666666789999999877544443322


Q ss_pred             ----CCC-CCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717          384 ----GHT-KPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       384 ----~h~-~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                          .|. ..|..-.|+.++..     +....++ .+.-|++..
T Consensus       295 d~~~~~~tq~ifgt~f~~~n~s-----~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  295 DVERKHNTQHIFGTNFNNENES-----NDVKNEL-QGAEYNILS  332 (344)
T ss_pred             cccccccccccccccccCCCcc-----cccccch-hhheeeccc
Confidence                233 34777777776653     3344333 345555543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.14  E-value=4.3e-08  Score=91.16  Aligned_cols=191  Identities=13%  Similarity=0.058  Sum_probs=116.2

Q ss_pred             CCCcEEEEEeCC--CeEEEEECC---CcEEEEECCCcceEEEeecccccEEEEEEecCCe-EE-EEeCCC--eEEEecCC
Q 013717          211 HGDAVTGLAVNN--GLIYSVSWD---KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY-TGSADR--KIRVWAKP  281 (437)
Q Consensus       211 ~~~~v~~~~~~~--~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~dg--~v~iwd~~  281 (437)
                      +...+....|+|  ++++.+..+   ..|++||+.+++.... ..+...+.+++|+||++ |+ +.+.++  .|.+||+.
T Consensus       188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~  266 (417)
T TIGR02800       188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD  266 (417)
T ss_pred             CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence            555677888888  677766543   4799999988865433 33556677899999998 55 444444  58888876


Q ss_pred             CCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-CC--cEEEEECCCCccceEEeeeecccccceE--EEEeeCCEE
Q 013717          282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-DR--SILVWDREDSANHMVVTGALRGHGKAIL--CLINVAGLL  356 (437)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~l  356 (437)
                      ...     ...+..+........|+|||++|+..+. ++  .|+++|+.+++.. .+    ..+.....  .+..++++|
T Consensus       267 ~~~-----~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l----~~~~~~~~~~~~spdg~~i  336 (417)
T TIGR02800       267 GKQ-----LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RL----TFRGGYNASPSWSPDGDLI  336 (417)
T ss_pred             CCC-----EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Ee----ecCCCCccCeEECCCCCEE
Confidence            432     2233334444556789999998876654 33  5888888765421 11    11222333  444556677


Q ss_pred             EEEeCCC---cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC-C--cEEEEeecc
Q 013717          357 MSGSADR---TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD-G--EIRAWQVSV  422 (437)
Q Consensus       357 ~~~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-g--~i~iw~~~~  422 (437)
                      +.++.++   .|.+||+.++.    ...+... .......|+|++.     +|+..+.+ +  .+++.+.+.
T Consensus       337 ~~~~~~~~~~~i~~~d~~~~~----~~~l~~~-~~~~~p~~spdg~-----~l~~~~~~~~~~~l~~~~~~g  398 (417)
T TIGR02800       337 AFVHREGGGFNIAVMDLDGGG----ERVLTDT-GLDESPSFAPNGR-----MILYATTRGGRGVLGLVSTDG  398 (417)
T ss_pred             EEEEccCCceEEEEEeCCCCC----eEEccCC-CCCCCceECCCCC-----EEEEEEeCCCcEEEEEEECCC
Confidence            7777765   78889988744    2222222 2334567999885     34444443 3  345555443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.13  E-value=2.3e-10  Score=101.01  Aligned_cols=246  Identities=14%  Similarity=0.210  Sum_probs=155.6

Q ss_pred             cCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCc
Q 013717          137 DNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA  214 (437)
Q Consensus       137 ~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (437)
                      .+.+|+..|..++-.++.  +++++.|.+|++|.++.........                       ...-.+..|..+
T Consensus       730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~ts-----------------------aCQfTY~aHkk~  786 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTS-----------------------ACQFTYQAHKKP  786 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccc-----------------------eeeeEhhhccCc
Confidence            347899999999876443  9999999999999987542110000                       011233569999


Q ss_pred             EEEEEeCCCeEEEEECCCcEEEEECCCcceEEEee--cccccEEEEEEecC--Ce-EE-EEeCCCeEEEecCCCCcccce
Q 013717          215 VTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIK--AHEDAVNAVAVSAG--GT-VY-TGSADRKIRVWAKPFNEKRHA  288 (437)
Q Consensus       215 v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~--~~-l~-~~~~dg~v~iwd~~~~~~~~~  288 (437)
                      |.++.|-...-..++.||-|++||.--++.+..+.  ...+.+..+..-++  .. ++ -++...+|+++|.+...-..+
T Consensus       787 i~~igfL~~lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E  866 (1034)
T KOG4190|consen  787 IHDIGFLADLRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCE  866 (1034)
T ss_pred             ccceeeeeccceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceee
Confidence            99999987444455668999999987777665443  12233333443333  33 33 347789999999875443222


Q ss_pred             eeE-EeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEE-eeCCEEEEEeCCCcEE
Q 013717          289 LIA-TLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI-NVAGLLMSGSADRTVR  366 (437)
Q Consensus       289 ~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~l~~~~~dg~i~  366 (437)
                      ... .-.+.+..+.+++..+.|+.++++-.+|.|.+.|.++++    .+..++........++ ++.+.|+....|.++.
T Consensus       867 ~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~----vINswrpmecdllqlaapsdq~L~~saldHsla  942 (1034)
T KOG4190|consen  867 LKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK----VINSWRPMECDLLQLAAPSDQALAQSALDHSLA  942 (1034)
T ss_pred             EEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc----eeccCCcccchhhhhcCchhHHHHhhcccceeE
Confidence            111 112345678999999999999999999999999999886    4444444444444444 4455788888888888


Q ss_pred             E-eeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717          367 I-WQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       367 i-wd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~  419 (437)
                      + |....+-   ...+.+....+..-+  ..-++     -|+++-....+.+|.
T Consensus       943 VnWhaldgi---mh~q~kpppepahfl--qsvgp-----SLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  943 VNWHALDGI---MHLQDKPPPEPAHFL--QSVGP-----SLVTAQNGNILGVYA  986 (1034)
T ss_pred             eeehhcCCe---eeeccCCCCcchhhh--hccCc-----eeEEeccCcEEEEEe
Confidence            8 8766543   222222222221111  11122     377776666777774

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.13  E-value=7.5e-09  Score=95.26  Aligned_cols=285  Identities=12%  Similarity=0.101  Sum_probs=187.8

Q ss_pred             cCCeEEEEee-CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC-----------e---EEEEecCC
Q 013717           98 KLPIGCIAVH-HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG-----------K---IFTAHQDC  162 (437)
Q Consensus        98 ~~~V~~l~~~-~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----------~---l~s~~~dg  162 (437)
                      ...-.++.|+ +.++|-|+...|.+-|..+  .+.+..+   +-|...|+.+.|.|-           .   |+++...|
T Consensus        15 ~sN~~A~Dw~~~GLiAygshslV~VVDs~s--~q~iqsi---e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G   89 (1062)
T KOG1912|consen   15 RSNRNAADWSPSGLIAYGSHSLVSVVDSRS--LQLIQSI---ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG   89 (1062)
T ss_pred             cccccccccCccceEEEecCceEEEEehhh--hhhhhcc---ccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence            3345678888 7888888888888889877  5555555   669999999999731           1   67778889


Q ss_pred             eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC------CeEEEEECCCcEEE
Q 013717          163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN------GLIYSVSWDKSLKI  236 (437)
Q Consensus       163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~l~~~~~dg~i~i  236 (437)
                      .|.+||...+.....+.                              .|..++..++|-+      ..|++.....+|.+
T Consensus        90 rIil~d~~~~s~~~~l~------------------------------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvL  139 (1062)
T KOG1912|consen   90 RIILVDFVLASVINWLS------------------------------HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVL  139 (1062)
T ss_pred             cEEEEEehhhhhhhhhc------------------------------CCCcchhheeeeeccCcchheeEEecCCcEEEE
Confidence            99999998775444333                              4778888888854      57777788899999


Q ss_pred             EECCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcc---cceeeEEeeCccc-------------
Q 013717          237 WRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEK---RHALIATLEKHKS-------------  298 (437)
Q Consensus       237 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~-------------  298 (437)
                      |+..+|+.............|+.+.|-..  +..-+..|.+.+-+.-...+   ..+..+.-..|..             
T Consensus       140 wntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns  219 (1062)
T KOG1912|consen  140 WNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNS  219 (1062)
T ss_pred             EEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhcccc
Confidence            99999999988876667788899998553  77777778877776532221   1122222112211             


Q ss_pred             ---c---------EEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCc
Q 013717          299 ---A---------VNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRT  364 (437)
Q Consensus       299 ---~---------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~  364 (437)
                         .         ...++|+|.-+.++-......+.++|++-.......  .+......+..+-++++  .|++...||.
T Consensus       220 ~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vv--pier~~akfv~vlP~~~rd~LfclH~nG~  297 (1062)
T KOG1912|consen  220 TTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVV--PIERGGAKFVDVLPDPRRDALFCLHSNGR  297 (1062)
T ss_pred             ccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEE--EeccCCcceeEeccCCCcceEEEEecCCe
Confidence               0         123567886555555556778999999765433322  23333445666666655  9999999999


Q ss_pred             EEEeeCCCCC----------------CeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          365 VRIWQRGSDG----------------RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       365 i~iwd~~~~~----------------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      +.||-.+...                +..++..++  ...+...+.+|..+.    .++.--.+|.+.+|.+..+..
T Consensus       298 ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~--~~rp~~~~~cPs~~s----a~avl~s~g~~~~w~l~~~ri  368 (1062)
T KOG1912|consen  298 LTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPME--EFRPVIGASCPSTPS----ALAVLYSSGDSTFWQLSNGRI  368 (1062)
T ss_pred             EEEEEeeccCccccccchhhccccccceEEEeech--hcccceeecCCCChh----hhhhhhhcchhHHHhhhcCCc
Confidence            9999766521                112222222  122333444554332    344445688999999997653

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.12  E-value=4.2e-08  Score=83.65  Aligned_cols=226  Identities=16%  Similarity=0.147  Sum_probs=135.3

Q ss_pred             CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECC
Q 013717          161 DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRAS  240 (437)
Q Consensus       161 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~  240 (437)
                      +|+|..||..+++.......-+                           .....+.......+.+++++.++.|..||..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~---------------------------~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~   54 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGP---------------------------GIGGPVATAVPDGGRVYVASGDGNLYALDAK   54 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSS---------------------------SCSSEEETEEEETTEEEEEETTSEEEEEETT
T ss_pred             CCEEEEEECCCCCEEEEEECCC---------------------------CCCCccceEEEeCCEEEEEcCCCEEEEEECC
Confidence            6889999998887655443110                           0122222222255788888999999999999


Q ss_pred             CcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCc
Q 013717          241 DLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRS  320 (437)
Q Consensus       241 ~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  320 (437)
                      +|+.+..... ...+.......++.+++++.++.|..+|..++...++...................++..++++..++.
T Consensus        55 tG~~~W~~~~-~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  133 (238)
T PF13360_consen   55 TGKVLWRFDL-PGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK  133 (238)
T ss_dssp             TSEEEEEEEC-SSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE
T ss_pred             CCCEEEEeec-cccccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCc
Confidence            9999888764 222222124446678888889999999977766443321111001111122222223778888888999


Q ss_pred             EEEEECCCCccceEEeeeecccccc-------eEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEE
Q 013717          321 ILVWDREDSANHMVVTGALRGHGKA-------ILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLT  393 (437)
Q Consensus       321 i~i~d~~~~~~~~~~~~~~~~~~~~-------i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~  393 (437)
                      |..+|+++++...........-...       ...+...++.++.++.++.+.-+|+.+++   .+....  ...+..+ 
T Consensus       134 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~---~~w~~~--~~~~~~~-  207 (238)
T PF13360_consen  134 LVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGE---KLWSKP--ISGIYSL-  207 (238)
T ss_dssp             EEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTE---EEEEEC--SS-ECEC-
T ss_pred             EEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCC---EEEEec--CCCccCC-
Confidence            9999999988655543311110111       13334445578888888864334999876   222222  2223332 


Q ss_pred             EEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          394 AVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       394 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      ....++     .|+.++.++.|..||+.+++.
T Consensus       208 ~~~~~~-----~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  208 PSVDGG-----TLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             EECCCT-----EEEEEETTTEEEEEETTTTEE
T ss_pred             ceeeCC-----EEEEEeCCCEEEEEECCCCCE
Confidence            233333     577677999999999999864

...

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.12  E-value=2.4e-07  Score=92.58  Aligned_cols=307  Identities=9%  Similarity=0.080  Sum_probs=176.1

Q ss_pred             cCCeEEEEee--CCEEEEEecC-eEEEE----eCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEe
Q 013717           98 KLPIGCIAVH--HNFLYAASSH-EINVY----DRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQ  168 (437)
Q Consensus        98 ~~~V~~l~~~--~~~l~s~~~d-~v~vw----d~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd  168 (437)
                      .+.|.++.|-  .+.++.+..+ .|.+.    +......+.+..      -...|.+++|+||.  |+.++.++++.+..
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~------vd~GI~a~~WSPD~Ella~vT~~~~l~~mt  148 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS------VDSGILAASWSPDEELLALVTGEGNLLLMT  148 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE------EcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence            4678888886  5556666655 77777    666655555554      46799999999987  77777788888764


Q ss_pred             CCCCcccccccccCc--cccceeeecCCCCeeEEe------------e-----ccceeeecCCCcEEEEEeCC--CeEEE
Q 013717          169 LTPTKHHKLKTTLPT--VNDRLLRFMLPNSYVTVR------------R-----HKKKLWIEHGDAVTGLAVNN--GLIYS  227 (437)
Q Consensus       169 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------------~-----~~~~~~~~~~~~v~~~~~~~--~~l~~  227 (437)
                      .+ .+.+......+.  ............+.-...            .     .....+. ....-..++|.+  .++|+
T Consensus       149 ~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAV  226 (928)
T PF04762_consen  149 RD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAV  226 (928)
T ss_pred             cc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEE
Confidence            32 211111110000  000000000000000000            0     0001112 444556788877  77777


Q ss_pred             EEC---C---CcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeC----CCeEEEecCCCCcccceeeEEeeCcc
Q 013717          228 VSW---D---KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSA----DRKIRVWAKPFNEKRHALIATLEKHK  297 (437)
Q Consensus       228 ~~~---d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~  297 (437)
                      .+-   .   ..++||+-+ |+...+-..-.+--.+++|-|.|.++++..    ...|.+|.-+ +.+.++....+....
T Consensus       227 ss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~  304 (928)
T PF04762_consen  227 SSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEE  304 (928)
T ss_pred             EEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCC
Confidence            664   2   579999954 665554444444456789999999554443    3567777543 222222222233456


Q ss_pred             ccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecc-cccceEEEEeeCC---EEEEEeCCCcEEEeeC---
Q 013717          298 SAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRG-HGKAILCLINVAG---LLMSGSADRTVRIWQR---  370 (437)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~---  370 (437)
                      ..|..+.|++|+..|+....|. |.+|-..+..  +.+++.+.- ....+..+.|++.   .|...+.+|.+..++.   
T Consensus       305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH--WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~  381 (928)
T PF04762_consen  305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH--WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD  381 (928)
T ss_pred             ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE--EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEE
Confidence            7899999999999999987665 9999987643  233333332 1223344777754   6666666666655432   


Q ss_pred             -CCCC-----------------------------CeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEee
Q 013717          371 -GSDG-----------------------------RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV  420 (437)
Q Consensus       371 -~~~~-----------------------------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~  420 (437)
                       ..+.                             ++.+...+. -..+|.+++|+++..     .++.-..||.|.+|..
T Consensus       382 v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~-----~~avl~~d~~l~~~~~  455 (928)
T PF04762_consen  382 VSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNS-----RFAVLTSDGSLSIYEW  455 (928)
T ss_pred             EEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCC-----eEEEEECCCCEEEEEe
Confidence             2110                             000111121 346899999999875     4888889999999996


Q ss_pred             ccC
Q 013717          421 SVS  423 (437)
Q Consensus       421 ~~~  423 (437)
                      ...
T Consensus       456 ~~~  458 (928)
T PF04762_consen  456 DLK  458 (928)
T ss_pred             cCC
Confidence            654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.10  E-value=2.7e-07  Score=84.79  Aligned_cols=272  Identities=11%  Similarity=0.058  Sum_probs=158.9

Q ss_pred             eeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCC-C----cccE-EEEEEeCCeEEEEecCCeEEEEeCCCCcccccc
Q 013717          106 VHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDS-S----SGSV-KSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLK  178 (437)
Q Consensus       106 ~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~-h----~~~v-~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  178 (437)
                      +.++.++.++.+ .+.-+|.++++..=...+....+ +    ...+ ..+...++.++.++.+|.+..+|.++++.....
T Consensus        67 v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~  146 (394)
T PRK11138         67 VAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQT  146 (394)
T ss_pred             EECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence            346666777666 88888887764322222211000 0    0011 224455777888889999999999999865544


Q ss_pred             cccCccccceeeecCCCCeeEEeeccceeeecCCCcEE-EEEeCCCeEEEEECCCcEEEEECCCcceEEEeecccccE--
Q 013717          179 TTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT-GLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAV--  255 (437)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v--  255 (437)
                      ...                               ..+. .-.+..+.++.+..+|.|..+|.++|+.+.........+  
T Consensus       147 ~~~-------------------------------~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~  195 (394)
T PRK11138        147 KVA-------------------------------GEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL  195 (394)
T ss_pred             cCC-------------------------------CceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccc
Confidence            311                               1111 112224677788889999999999999988775321111  


Q ss_pred             ---EEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccc---cEEEEEEcc--CCCEEEEEeCCCcEEEEECC
Q 013717          256 ---NAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKS---AVNALALSD--DGTVLFSGACDRSILVWDRE  327 (437)
Q Consensus       256 ---~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~---~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~  327 (437)
                         .+-... ++.++.++.+|.+..+|..++...++..........   ....+..+|  .+..++.++.+|.++.+|..
T Consensus       196 ~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~  274 (394)
T PRK11138        196 RGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR  274 (394)
T ss_pred             cCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence               111111 455777888999999888766544332110000000   011111222  24567777889999999999


Q ss_pred             CCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCC-CCCeeEEEEEccCCCCceEEE
Q 013717          328 DSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGH-TKPVKSLTAVTEEGQNGVVSV  406 (437)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~l  406 (437)
                      +++..+...  +.    ....+...++.|+.++.+|.+..+|..+++   .+.....- .....+.... ++      +|
T Consensus       275 tG~~~W~~~--~~----~~~~~~~~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~~~~~~~sp~v~-~g------~l  338 (394)
T PRK11138        275 SGQIVWKRE--YG----SVNDFAVDGGRIYLVDQNDRVYALDTRGGV---ELWSQSDLLHRLLTAPVLY-NG------YL  338 (394)
T ss_pred             CCCEEEeec--CC----CccCcEEECCEEEEEcCCCeEEEEECCCCc---EEEcccccCCCcccCCEEE-CC------EE
Confidence            987554432  11    112344567788888999999999999876   22221110 1112222222 22      67


Q ss_pred             EEecCCCcEEEEeeccCCC
Q 013717          407 FSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       407 ~s~~~dg~i~iw~~~~~~~  425 (437)
                      +.++.||.|...|..+++.
T Consensus       339 ~v~~~~G~l~~ld~~tG~~  357 (394)
T PRK11138        339 VVGDSEGYLHWINREDGRF  357 (394)
T ss_pred             EEEeCCCEEEEEECCCCCE
Confidence            8888999999988887764

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.10  E-value=2.7e-08  Score=80.28  Aligned_cols=195  Identities=9%  Similarity=-0.059  Sum_probs=128.1

Q ss_pred             CeEEEEECCCcEEEEECCCcceEEEe-ecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCcccc
Q 013717          223 GLIYSVSWDKSLKIWRASDLRCLESI-KAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSA  299 (437)
Q Consensus       223 ~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  299 (437)
                      .+|+.|+..|...+|...+.+....+ ..+...|+-+.=.-+..  +..++.|.++++.++..+......    ....-.
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~----h~~~~~  160 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV----HNQNLT  160 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee----eccccc
Confidence            78999999999999999876543333 23333333222112333  888899999999987654322111    111123


Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCCCCCCee
Q 013717          300 VNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFG  377 (437)
Q Consensus       300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~  377 (437)
                      +.++.+++|++++++.+....|..|.+.......... ........-.+.+|+  ...+|++..||++.|||++......
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~-~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm  239 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI-YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM  239 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee-EecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence            7899999999999999999999999998754433221 122222233444555  4499999999999999998755211


Q ss_pred             --eeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          378 --CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       378 --~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                        .-.+-..|.+.+..+.|++.+.-   .+|+-.-.-+.+.+-|++....
T Consensus       240 ~~~sstrp~hnGa~R~c~Fsl~g~l---DLLf~sEhfs~~hv~D~R~~~~  286 (344)
T KOG4532|consen  240 AEISSTRPHHNGAFRVCRFSLYGLL---DLLFISEHFSRVHVVDTRNYVN  286 (344)
T ss_pred             hhhcccCCCCCCceEEEEecCCCcc---eEEEEecCcceEEEEEcccCce
Confidence              11223358899999999986543   2444444456888888887754

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.10  E-value=7.5e-07  Score=78.27  Aligned_cols=272  Identities=8%  Similarity=0.018  Sum_probs=150.1

Q ss_pred             CeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe---EEEEe---------cCCeEEEEeCCCCcccccccccCcc
Q 013717          117 HEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAH---------QDCKIRVWQLTPTKHHKLKTTLPTV  184 (437)
Q Consensus       117 d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~  184 (437)
                      +.|.+.|..+.  +.+..+..  +...  ..+ +++++   .++.+         .+..|.+||..+.+....+..-+..
T Consensus        27 ~~v~ViD~~~~--~v~g~i~~--G~~P--~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p   99 (352)
T TIGR02658        27 TQVYTIDGEAG--RVLGMTDG--GFLP--NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP   99 (352)
T ss_pred             ceEEEEECCCC--EEEEEEEc--cCCC--cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence            48899999884  44444421  1111  223 77664   44445         5889999999998766554421100


Q ss_pred             ccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE-C-CCcEEEEECCCcceEEEeecccccEEEEEE
Q 013717          185 NDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS-W-DKSLKIWRASDLRCLESIKAHEDAVNAVAV  260 (437)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  260 (437)
                      .                     .  .....-..+++++  +++++.. . +..|.+.|+.+++.+.++.-. +...-...
T Consensus       100 ~---------------------~--~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t  155 (352)
T TIGR02658       100 R---------------------F--LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPT  155 (352)
T ss_pred             h---------------------h--hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEe
Confidence            0                     0  0112223556666  6777665 3 789999999999999888642 21222222


Q ss_pred             ecCCeEEEEeCCCeEEEecCCCCccccee-eEEeeCccccEE-EEEEcc-CCCEEEEEeCCCcEEEEECCCCccceEEe-
Q 013717          261 SAGGTVYTGSADRKIRVWAKPFNEKRHAL-IATLEKHKSAVN-ALALSD-DGTVLFSGACDRSILVWDREDSANHMVVT-  336 (437)
Q Consensus       261 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~i~-~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-  336 (437)
                      + +..+.+-+.||......+......... ...+.....++. .-.|.+ +|+++++..+ |.|++.|+.......... 
T Consensus       156 ~-e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~  233 (352)
T TIGR02658       156 A-NDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAI  233 (352)
T ss_pred             c-CCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceeccee
Confidence            2 222334445665555444322211100 111111000000 004455 8888888776 999999975432211111 


Q ss_pred             ee---------ecccccceEEEEeeCCEEEEEe----------CCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc
Q 013717          337 GA---------LRGHGKAILCLINVAGLLMSGS----------ADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE  397 (437)
Q Consensus       337 ~~---------~~~~~~~i~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~  397 (437)
                      ..         +........++..+++.+++..          ..+.|.++|..+.+   .+..+.- ...+..|+++|+
T Consensus       234 ~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k---vi~~i~v-G~~~~~iavS~D  309 (352)
T TIGR02658       234 EAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK---RLRKIEL-GHEIDSINVSQD  309 (352)
T ss_pred             eeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe---EEEEEeC-CCceeeEEECCC
Confidence            10         1111112244444556555532          12579999999876   5555442 347899999999


Q ss_pred             CCCCceEEEEEecCCCcEEEEeeccCCCCCC
Q 013717          398 EGQNGVVSVFSGSLDGEIRAWQVSVSCPNSS  428 (437)
Q Consensus       398 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~  428 (437)
                      +..   .++++...++.|.+.|..+.+....
T Consensus       310 gkp---~lyvtn~~s~~VsViD~~t~k~i~~  337 (352)
T TIGR02658       310 AKP---LLYALSTGDKTLYIFDAETGKELSS  337 (352)
T ss_pred             CCe---EEEEeCCCCCcEEEEECcCCeEEee
Confidence            852   2444555789999999998875443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.09  E-value=7.5e-08  Score=88.17  Aligned_cols=281  Identities=13%  Similarity=0.114  Sum_probs=180.5

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCce----e---eeecc---ccCCCCcccEEEEEEeCCe--EEEEec
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTW----T---SINTF---NDNDSSSGSVKSVTFCDGK--IFTAHQ  160 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~----~---~~~~~---~~~~~h~~~v~~l~~~~~~--l~s~~~  160 (437)
                      ..+....|++|+  ..|+|.|+.| .++|..+.+...    +   ....+   ..+++|.+.|.-+.|+.+.  |-+...
T Consensus        12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt   91 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT   91 (1189)
T ss_pred             CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence            456678999999  8999999999 999988865311    1   11111   2337999999999999654  889999


Q ss_pred             CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEE
Q 013717          161 DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWR  238 (437)
Q Consensus       161 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd  238 (437)
                      +|-|.+|-+-.+........                            ....+-|.+++|+-  ..++....||.|.+=.
T Consensus        92 ~GlIiVWmlykgsW~EEMiN----------------------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs  143 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMIN----------------------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS  143 (1189)
T ss_pred             CceEEEEeeecccHHHHHhh----------------------------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence            99999999887754333221                            12456688888876  7888888899888776


Q ss_pred             CCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc---eee----EEeeCccccEEEEEEc----
Q 013717          239 ASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH---ALI----ATLEKHKSAVNALALS----  306 (437)
Q Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~---~~~----~~~~~~~~~i~~~~~~----  306 (437)
                      ++..+ +..-.-.......+.|++|.+ ++.+-.+|.+++||...+....   .+.    ..+......|..+.|.    
T Consensus       144 vdGNR-IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~  222 (1189)
T KOG2041|consen  144 VDGNR-IWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY  222 (1189)
T ss_pred             eccce-ecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence            65433 221111122345788999998 7788889999999876433211   111    1111122235555553    


Q ss_pred             ----cCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeCCC---------cEEEeeCC
Q 013717          307 ----DDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSADR---------TVRIWQRG  371 (437)
Q Consensus       307 ----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg---------~i~iwd~~  371 (437)
                          ||...|+.+..+|.+.|-.-.....+..+.     ..-.+....|+  |.+|++++.+.         .|.+|..-
T Consensus       223 ~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-----tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~  297 (1189)
T KOG2041|consen  223 QPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-----TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY  297 (1189)
T ss_pred             ccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-----cccEeecceecCCCcEEEEccCcccccCccccceEEEeccc
Confidence                477789999999999887655443333222     12445555555  44888777643         46666543


Q ss_pred             CCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEee
Q 013717          372 SDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV  420 (437)
Q Consensus       372 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~  420 (437)
                      .    ..+.+++-....|++++|-..+      +-++-..|+.|.+=++
T Consensus       298 G----~i~gtlkvpg~~It~lsWEg~g------LriA~AvdsfiyfanI  336 (1189)
T KOG2041|consen  298 G----HIVGTLKVPGSCITGLSWEGTG------LRIAIAVDSFIYFANI  336 (1189)
T ss_pred             h----hheEEEecCCceeeeeEEcCCc------eEEEEEecceEEEEee
Confidence            2    2567777777889999997765      2333334555554433

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.09  E-value=7.6e-08  Score=89.66  Aligned_cols=195  Identities=16%  Similarity=0.099  Sum_probs=117.9

Q ss_pred             CCCcEEEEEeCC--CeEEEEECC---CcEEEEECCCcceEEEeecccccEEEEEEecCCe-EE-EEeCCC--eEEEecCC
Q 013717          211 HGDAVTGLAVNN--GLIYSVSWD---KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY-TGSADR--KIRVWAKP  281 (437)
Q Consensus       211 ~~~~v~~~~~~~--~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~dg--~v~iwd~~  281 (437)
                      +...+....|+|  +.|+..+.+   ..|.+||+.+++... +....+.+....|+|||+ |+ +...+|  .|.+||+.
T Consensus       197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~  275 (430)
T PRK00178        197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA  275 (430)
T ss_pred             CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence            666788889998  667665533   369999998886543 333344566789999998 55 444455  57778876


Q ss_pred             CCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-CC--cEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEE
Q 013717          282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-DR--SILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMS  358 (437)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~  358 (437)
                      +..     ...+..+........|+|||+.|+..+. +|  .|+++|+.+++... +.  ..+.......++++++.|+.
T Consensus       276 ~~~-----~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt--~~~~~~~~~~~Spdg~~i~~  347 (430)
T PRK00178        276 SRQ-----LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VT--FVGNYNARPRLSADGKTLVM  347 (430)
T ss_pred             CCC-----eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-ee--cCCCCccceEECCCCCEEEE
Confidence            543     2233344455667889999998776553 33  57777887664221 21  22222223455666777666


Q ss_pred             EeC-CC--cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCc--EEEEeeccC
Q 013717          359 GSA-DR--TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGE--IRAWQVSVS  423 (437)
Q Consensus       359 ~~~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~--i~iw~~~~~  423 (437)
                      .+. ++  .|.+||+.+++.    ..+.. ........|+|++..    ++++...+|.  |.+++++..
T Consensus       348 ~~~~~~~~~l~~~dl~tg~~----~~lt~-~~~~~~p~~spdg~~----i~~~~~~~g~~~l~~~~~~g~  408 (430)
T PRK00178        348 VHRQDGNFHVAAQDLQRGSV----RILTD-TSLDESPSVAPNGTM----LIYATRQQGRGVLMLVSINGR  408 (430)
T ss_pred             EEccCCceEEEEEECCCCCE----EEccC-CCCCCCceECCCCCE----EEEEEecCCceEEEEEECCCC
Confidence            554 33  588899887652    22221 122235579998853    5555544444  555666543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.05  E-value=1.1e-09  Score=87.60  Aligned_cols=195  Identities=16%  Similarity=0.268  Sum_probs=121.0

Q ss_pred             EEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEee--cccccEEEEEEe-----------cCCeEEEEeCCCeEEEecC
Q 013717          215 VTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIK--AHEDAVNAVAVS-----------AGGTVYTGSADRKIRVWAK  280 (437)
Q Consensus       215 v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~-----------~~~~l~~~~~dg~v~iwd~  280 (437)
                      ++.+.+.. ..|+++..++.+..+..-++.+...++  ...++..+++.+           ++..++++..||.+.+++.
T Consensus        39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~  118 (319)
T KOG4714|consen   39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST  118 (319)
T ss_pred             EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence            55555554 667777777777776655544433222  111222223222           3445999999999999986


Q ss_pred             CCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-----CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-
Q 013717          281 PFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-----CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-  354 (437)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  354 (437)
                      +...   ........-...-.+.++...++.+.++.     .-+..++|+++..+........    ...+.+++.++. 
T Consensus       119 ~~~~---~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~----~~~v~~l~~hp~q  191 (319)
T KOG4714|consen  119 DKDL---ALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA----LDAVTALCSHPAQ  191 (319)
T ss_pred             hHHH---hhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccc----cccchhhhCCccc
Confidence            5321   12222211111222333334455555432     2345677777643322222111    222666666554 


Q ss_pred             --EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717          355 --LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       355 --~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                        ++++|+.||.+-+||.+...  .+...+.+|+.+|+.+-|+|..+.    -|+++++||.+-.||-.+
T Consensus       192 q~~v~cgt~dg~~~l~d~rn~~--~p~S~l~ahk~~i~eV~FHpk~p~----~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  192 QHLVCCGTDDGIVGLWDARNVA--MPVSLLKAHKAEIWEVHFHPKNPE----HLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccEEEEecCCCeEEEEEccccc--chHHHHHHhhhhhhheeccCCCch----heeEecCCCcEEEEcCCC
Confidence              88999999999999999864  577788999999999999998875    799999999999999874

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=1.7e-07  Score=87.06  Aligned_cols=195  Identities=12%  Similarity=0.101  Sum_probs=114.0

Q ss_pred             CCCcEEEEEeCC--CeEEEEEC-CC--cEEEEECCCcceEEEeecccccEEEEEEecCCe-EE-EEeCCCe--EEEecCC
Q 013717          211 HGDAVTGLAVNN--GLIYSVSW-DK--SLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY-TGSADRK--IRVWAKP  281 (437)
Q Consensus       211 ~~~~v~~~~~~~--~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~dg~--v~iwd~~  281 (437)
                      +...+....|+|  +.|+..+. ++  .|.+||+.+++... +....+.....+|+|||+ |+ +...+|.  |.++|+.
T Consensus       216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~  294 (448)
T PRK04792        216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA  294 (448)
T ss_pred             CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence            556788888988  56665543 33  58899998876533 222333445789999998 65 4566665  6666765


Q ss_pred             CCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-CC--cEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEE
Q 013717          282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-DR--SILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMS  358 (437)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~  358 (437)
                      .+.     ...+..+.......+|+|||+.|+..+. ++  .|+++|+.+++... +.  ..+....-..+++++++|+.
T Consensus       295 tg~-----~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt--~~g~~~~~~~~SpDG~~l~~  366 (448)
T PRK04792        295 TKA-----LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LT--FEGEQNLGGSITPDGRSMIM  366 (448)
T ss_pred             CCC-----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Ee--cCCCCCcCeeECCCCCEEEE
Confidence            432     2333344455677899999998876553 33  46677777654221 11  22222222355666776655


Q ss_pred             EeC-CC--cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCc--EEEEeeccC
Q 013717          359 GSA-DR--TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGE--IRAWQVSVS  423 (437)
Q Consensus       359 ~~~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~--i~iw~~~~~  423 (437)
                      .+. ++  .|.++|+.+++    ...+... .......|+|++..    ++++...+|.  +.+++.+..
T Consensus       367 ~~~~~g~~~I~~~dl~~g~----~~~lt~~-~~d~~ps~spdG~~----I~~~~~~~g~~~l~~~~~~G~  427 (448)
T PRK04792        367 VNRTNGKFNIARQDLETGA----MQVLTST-RLDESPSVAPNGTM----VIYSTTYQGKQVLAAVSIDGR  427 (448)
T ss_pred             EEecCCceEEEEEECCCCC----eEEccCC-CCCCCceECCCCCE----EEEEEecCCceEEEEEECCCC
Confidence            544 44  35556777654    1222222 12224479998863    5566656665  566666543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.00  E-value=1.5e-08  Score=92.64  Aligned_cols=243  Identities=13%  Similarity=0.082  Sum_probs=161.2

Q ss_pred             CcccEEEEEEeC--CeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717          141 SSGSVKSVTFCD--GKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL  218 (437)
Q Consensus       141 h~~~v~~l~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  218 (437)
                      ......|+.|+.  +.++.|+.||.+++..+.+.........+....               .-...+.+.+|...|.-+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~s---------------nLsmNQtLeGH~~sV~vv   77 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAAS---------------NLSMNQTLEGHNASVMVV   77 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccccccccc---------------ccchhhhhccCcceEEEE
Confidence            456788999983  349999999999999887654222222111000               011224557899999999


Q ss_pred             EeCC--CeEEEEECCCcEEEEECCCcceEEEee--cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEe
Q 013717          219 AVNN--GLIYSVSWDKSLKIWRASDLRCLESIK--AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATL  293 (437)
Q Consensus       219 ~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~  293 (437)
                      .|+.  ..|-+...+|.|.+|-+-.+.-...+.  ..+..|.++.|..||. +.....||.|.+=.++.+.--.+   .+
T Consensus        78 TWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK---eL  154 (1189)
T KOG2041|consen   78 TWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK---EL  154 (1189)
T ss_pred             EeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch---hc
Confidence            9998  778888899999999987765433332  3466789999999998 88889999888866654321111   11


Q ss_pred             eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCcc-------ceEEeeeecccccceEEEEee----------CCEE
Q 013717          294 EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSAN-------HMVVTGALRGHGKAILCLINV----------AGLL  356 (437)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~~i~~~~~~----------~~~l  356 (437)
                      +  ......+.|++|.+.++.+-.+|.+++||....-.       .....+.+......+..+.|.          ...|
T Consensus       155 k--g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~l  232 (1189)
T KOG2041|consen  155 K--GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRL  232 (1189)
T ss_pred             c--hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEE
Confidence            1  22345789999999999999999999999764311       011111122222234444432          2289


Q ss_pred             EEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC
Q 013717          357 MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD  412 (437)
Q Consensus       357 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d  412 (437)
                      +++-..|.+.|..-.+...  ++-.-.+  -.|.+..|++++.     +|+.+|.|
T Consensus       233 avcy~nGr~QiMR~eND~~--Pvv~dtg--m~~vgakWnh~G~-----vLAvcG~~  279 (1189)
T KOG2041|consen  233 AVCYANGRMQIMRSENDPE--PVVVDTG--MKIVGAKWNHNGA-----VLAVCGND  279 (1189)
T ss_pred             EEEEcCceehhhhhcCCCC--CeEEecc--cEeecceecCCCc-----EEEEccCc
Confidence            9999999999987666552  3222222  5688889999885     67777764

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.97  E-value=1.9e-09  Score=89.81  Aligned_cols=149  Identities=17%  Similarity=0.197  Sum_probs=107.7

Q ss_pred             EEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccce
Q 013717          267 YTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI  346 (437)
Q Consensus       267 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i  346 (437)
                      ++.+.+-.|-+-|+.++.     ...+. ..+.|.++.|...++++..|+.+|.|..+|++...+-.......-.|...|
T Consensus       228 fs~G~sqqv~L~nvetg~-----~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssv  301 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGH-----QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSV  301 (425)
T ss_pred             ecccccceeEEEEeeccc-----ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcch
Confidence            455566777787776543     22333 567899999998899999999999999999986521111111122377777


Q ss_pred             EEEE---eeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          347 LCLI---NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       347 ~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      +++.   +++++|++.+.+|+|++||++.-+...-+....||.+.-.-+-++-+...   ..++++|+|...|||.++.+
T Consensus       302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ee---g~I~s~GdDcytRiWsl~~g  378 (425)
T KOG2695|consen  302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEE---GSIFSVGDDCYTRIWSLDSG  378 (425)
T ss_pred             hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccccc---ceEEEccCeeEEEEEecccC
Confidence            7764   56779999999999999999976633348899999775555544433322   38999999999999999976


Q ss_pred             C
Q 013717          424 C  424 (437)
Q Consensus       424 ~  424 (437)
                      .
T Consensus       379 h  379 (425)
T KOG2695|consen  379 H  379 (425)
T ss_pred             c
Confidence            4

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.97  E-value=1.8e-08  Score=85.87  Aligned_cols=161  Identities=16%  Similarity=0.184  Sum_probs=108.9

Q ss_pred             EEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccce
Q 013717          255 VNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHM  333 (437)
Q Consensus       255 v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  333 (437)
                      ...+..+++++ +|++..+....+++++.+.+..+++.... -....+++.|..+......+..-|.++-+|+-....  
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--  141 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--  141 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence            44455677788 77777777777888776554334443333 233345556655555666555555555554433111  


Q ss_pred             EEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecC
Q 013717          334 VVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSL  411 (437)
Q Consensus       334 ~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~  411 (437)
                      -.....-||-..++.++++++  +|+++..|..|+|-.....-  ..-...-||+.-|..++..++.      .|+++|.
T Consensus       142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f--~IesfclGH~eFVS~isl~~~~------~LlS~sG  213 (390)
T KOG3914|consen  142 GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF--VIESFCLGHKEFVSTISLTDNY------LLLSGSG  213 (390)
T ss_pred             cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc--chhhhccccHhheeeeeeccCc------eeeecCC
Confidence            112234678888888877655  99999999999998776532  1223346799999999998875      7999999


Q ss_pred             CCcEEEEeeccCCCC
Q 013717          412 DGEIRAWQVSVSCPN  426 (437)
Q Consensus       412 dg~i~iw~~~~~~~~  426 (437)
                      |++|++||+.+++..
T Consensus       214 D~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  214 DKTLRLWDITSGKLL  228 (390)
T ss_pred             CCcEEEEecccCCcc
Confidence            999999999998753

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.97  E-value=4.8e-07  Score=83.47  Aligned_cols=233  Identities=12%  Similarity=0.010  Sum_probs=128.3

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe----EE-EEecCC--eEEEEeCCCCcccccccccCccccceee
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK----IF-TAHQDC--KIRVWQLTPTKHHKLKTTLPTVNDRLLR  190 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~  190 (437)
                      .|.+.|.+++..+.+..      ....+..-.|+|++    ++ +...+|  .|.+.++.+++......           
T Consensus       166 ~l~~~d~dG~~~~~lt~------~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-----------  228 (428)
T PRK01029        166 ELWSVDYDGQNLRPLTQ------EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-----------  228 (428)
T ss_pred             eEEEEcCCCCCceEccc------CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-----------
Confidence            56777777654333322      34455677899873    32 333333  57777887765332211           


Q ss_pred             ecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC-----CCcEEEEECCCc---ceEEEeecccccEEEEEE
Q 013717          191 FMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW-----DKSLKIWRASDL---RCLESIKAHEDAVNAVAV  260 (437)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-----dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~  260 (437)
                                          ..+......|+|  +.|+..+.     +..+.+|++..+   +...............+|
T Consensus       229 --------------------~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w  288 (428)
T PRK01029        229 --------------------LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF  288 (428)
T ss_pred             --------------------CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEE
Confidence                                222334567887  56665442     223445776653   323333222334567899


Q ss_pred             ecCCe-EEEEe-CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC---CcEEEEECCCCccceEE
Q 013717          261 SAGGT-VYTGS-ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD---RSILVWDREDSANHMVV  335 (437)
Q Consensus       261 ~~~~~-l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~  335 (437)
                      +|||+ |+..+ .+|...+|.+..+... .....+......+....|+|||++|+..+.+   ..|++||+.+++... +
T Consensus       289 SPDG~~Laf~s~~~g~~~ly~~~~~~~g-~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-L  366 (428)
T PRK01029        289 SPDGTRLVFVSNKDGRPRIYIMQIDPEG-QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-L  366 (428)
T ss_pred             CCCCCEEEEEECCCCCceEEEEECcccc-cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-c
Confidence            99998 66655 4676566643221111 1123333344566788999999988876543   469999998775322 2


Q ss_pred             eeeecccccce--EEEEeeCCEEEE-EeC--CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc
Q 013717          336 TGALRGHGKAI--LCLINVAGLLMS-GSA--DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE  397 (437)
Q Consensus       336 ~~~~~~~~~~i--~~~~~~~~~l~~-~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~  397 (437)
                      .    .....+  ..+++++..|+. +..  ...|+++|+..++    ...+....+.+...+|+|.
T Consensus       367 t----~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~----~~~Lt~~~g~~~~p~Ws~~  425 (428)
T PRK01029        367 T----TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK----TRKIVIGSGEKRFPSWGAF  425 (428)
T ss_pred             c----CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCCcccCceecCC
Confidence            1    111222  334445555553 333  3468888988755    2222234455667778774

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=1.1e-06  Score=78.41  Aligned_cols=316  Identities=10%  Similarity=0.061  Sum_probs=185.3

Q ss_pred             ceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEec-----------C-eEEEEeCCC
Q 013717           61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASS-----------H-EINVYDRTG  126 (437)
Q Consensus        61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~-----------d-~v~vwd~~~  126 (437)
                      -+..+|-...+++.-..| |.+|--.. ...++.+.|. .|.-+.||  .+||+|-+.           + .++|||+.+
T Consensus       215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~-f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t  291 (698)
T KOG2314|consen  215 YVRWSPKGTYLVTFHKQG-IALWGGES-FDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT  291 (698)
T ss_pred             eEEecCCceEEEEEeccc-eeeecCcc-HHHHHhccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence            567788888888887776 45565443 3344444554 47778888  899999872           2 799999999


Q ss_pred             CceeeeeccccCCCCcccEEEEEEe-CCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccc
Q 013717          127 TTWTSINTFNDNDSSSGSVKSVTFC-DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKK  205 (437)
Q Consensus       127 ~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (437)
                      |.  ..+.+.........-.-..|+ ++.+++.-.-..|.||+..+........ +                        
T Consensus       292 G~--lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Ks-l------------------------  344 (698)
T KOG2314|consen  292 GL--LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKS-L------------------------  344 (698)
T ss_pred             cc--hhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccc-c------------------------
Confidence            64  344443322222233445677 4444444444679999877543221111 1                        


Q ss_pred             eeeecCCCcEEEEEeCC--CeEEEEEC-----CCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEE---------
Q 013717          206 KLWIEHGDAVTGLAVNN--GLIYSVSW-----DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTG---------  269 (437)
Q Consensus       206 ~~~~~~~~~v~~~~~~~--~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~---------  269 (437)
                           .-..|....|+|  +.||.=..     -..+.+..+.+++.+++..-+.-.=..+-|-.+|..++.         
T Consensus       345 -----ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~  419 (698)
T KOG2314|consen  345 -----KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSK  419 (698)
T ss_pred             -----CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecccc
Confidence                 334577778888  34433221     234566666666666655433322233445555552222         


Q ss_pred             --eCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC---CCcEEEEECCCCccceEEeeeeccccc
Q 013717          270 --SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC---DRSILVWDREDSANHMVVTGALRGHGK  344 (437)
Q Consensus       270 --~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~  344 (437)
                        +.-..+.|+.++...   .++... .....|...+|-|.|..+++-+.   ..++.+|.+++......+...+.....
T Consensus       420 ~~g~f~n~eIfrireKd---Ipve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~  495 (698)
T KOG2314|consen  420 VKGQFSNLEIFRIREKD---IPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFA  495 (698)
T ss_pred             ccceEeeEEEEEeeccC---CCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhccccc
Confidence              222235555554322   122222 24577899999999998876554   457889988754333344444443333


Q ss_pred             ceEEEEeeCCEEEEE---eCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecC------CCcE
Q 013717          345 AILCLINVAGLLMSG---SADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSL------DGEI  415 (437)
Q Consensus       345 ~i~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~------dg~i  415 (437)
                      .-..+++.|.+++.+   +..|.+.++|.....   +..+-.......+.+.|.|.|     +|+++++.      |.--
T Consensus       496 N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~---~k~~~~~eh~~at~veWDPtG-----RYvvT~ss~wrhk~d~GY  567 (698)
T KOG2314|consen  496 NTVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD---LKDTASPEHFAATEVEWDPTG-----RYVVTSSSSWRHKVDNGY  567 (698)
T ss_pred             ceEEEcCCCcEEEEEEecccccceEEEecchhh---hhhccCccccccccceECCCC-----CEEEEeeehhhhccccce
Confidence            334455556665554   457889999988522   223333334467889999998     58998875      5556


Q ss_pred             EEEeeccC
Q 013717          416 RAWQVSVS  423 (437)
Q Consensus       416 ~iw~~~~~  423 (437)
                      ++|++...
T Consensus       568 ri~tfqGr  575 (698)
T KOG2314|consen  568 RIFTFQGR  575 (698)
T ss_pred             EEEEeecH
Confidence            88887754

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.92  E-value=4.7e-09  Score=87.56  Aligned_cols=164  Identities=17%  Similarity=0.191  Sum_probs=116.6

Q ss_pred             EEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCccc-ceeeEEeeCccccEEEE
Q 013717          226 YSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKR-HALIATLEKHKSAVNAL  303 (437)
Q Consensus       226 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~i~~~  303 (437)
                      ++.+.+-.|-+-|++++.. +.+. .++.|.++.|...+. ++.|..+|.|..+|++..... ......+. |.+.|+++
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL  304 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence            6667788899999988743 3343 667799999987566 899999999999999865322 22333333 88999999


Q ss_pred             EEcc-CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccce----EEEEeeCCEEEEEeCCCcEEEeeCCCCCCeee
Q 013717          304 ALSD-DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI----LCLINVAGLLMSGSADRTVRIWQRGSDGRFGC  378 (437)
Q Consensus       304 ~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i----~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  378 (437)
                      ..-. ++++|++.+.+|+|++||.+..++.. -...+.||...-    ..+......+++++.|...|||.++.+.   +
T Consensus       305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~-~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh---L  380 (425)
T KOG2695|consen  305 QILQFSQQKLMASDMTGKIKLYDLRATKCKK-SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH---L  380 (425)
T ss_pred             hhhccccceEeeccCcCceeEeeehhhhccc-ceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc---e
Confidence            8877 78899999999999999998766532 233455664433    3333344589999999999999999877   5


Q ss_pred             eeeecCC----CCCeeEEEEEc
Q 013717          379 LAVLEGH----TKPVKSLTAVT  396 (437)
Q Consensus       379 ~~~~~~h----~~~v~~l~~~~  396 (437)
                      +.++...    ...+..++|..
T Consensus       381 l~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  381 LCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             eeccCCCCccccccccceehhc
Confidence            5554422    22455555543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.91  E-value=2.6e-08  Score=84.90  Aligned_cols=146  Identities=18%  Similarity=0.220  Sum_probs=96.6

Q ss_pred             CeEEEEECCCcEEEEECCCcce----EEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCcc
Q 013717          223 GLIYSVSWDKSLKIWRASDLRC----LESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHK  297 (437)
Q Consensus       223 ~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  297 (437)
                      .+++.+..+....+++......    +.... ....-+++.+..+.. ...+-.-|.++-+|+-....  .....+-+|-
T Consensus        75 ~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--~~~~~~lGhv  151 (390)
T KOG3914|consen   75 RLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--GRCEPILGHV  151 (390)
T ss_pred             eEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc--cCcchhhhhh
Confidence            6777777777777777655432    22221 222333444444333 44443334444333322111  1233445799


Q ss_pred             ccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCC
Q 013717          298 SAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~  374 (437)
                      +.++.++++||+++|+++..|..|+|-.....   .....-.-||..-|..++..++ .|++|+.|++|++||+.+++
T Consensus       152 Sml~dVavS~D~~~IitaDRDEkIRvs~ypa~---f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  152 SMLLDVAVSPDDQFIITADRDEKIRVSRYPAT---FVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             hhhheeeecCCCCEEEEecCCceEEEEecCcc---cchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCC
Confidence            99999999999999999999999999877533   2233335689999999988766 67999999999999999987

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.90  E-value=1.3e-06  Score=80.73  Aligned_cols=200  Identities=10%  Similarity=-0.050  Sum_probs=110.8

Q ss_pred             CcEEEEEeCC--Ce---EEEEECC--CcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeC-CC----eEEEec
Q 013717          213 DAVTGLAVNN--GL---IYSVSWD--KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSA-DR----KIRVWA  279 (437)
Q Consensus       213 ~~v~~~~~~~--~~---l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~-dg----~v~iwd  279 (437)
                      ..+..=.|+|  +.   +++...+  ..|.+.++.+++.... ....+.....+|+|||+ |+..+. +|    .+.+|+
T Consensus       185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~  263 (428)
T PRK01029        185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFS  263 (428)
T ss_pred             CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCcceeEEEee
Confidence            3445557877  22   2344444  3588888887764333 33445566789999997 655442 23    344466


Q ss_pred             CCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEE--ECCCCccceEEeeeecccccce--EEEEeeCC
Q 013717          280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVW--DREDSANHMVVTGALRGHGKAI--LCLINVAG  354 (437)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~  354 (437)
                      +.... ..................+|+|||+.|+..+ .+|...+|  ++.........   +..+...+  ..++++++
T Consensus       264 ~~~g~-~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~---lt~~~~~~~~p~wSPDG~  339 (428)
T PRK01029        264 LETGA-IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL---LTKKYRNSSCPAWSPDGK  339 (428)
T ss_pred             cccCC-CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE---eccCCCCccceeECCCCC
Confidence            54321 1112222222223446789999999877665 46654454  44321111111   11222233  34555566


Q ss_pred             EEEEEeCC---CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecC--CCcEEEEeeccCCC
Q 013717          355 LLMSGSAD---RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSL--DGEIRAWQVSVSCP  425 (437)
Q Consensus       355 ~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~--dg~i~iw~~~~~~~  425 (437)
                      .|+..+.+   ..|.+||+.+++    ...+......+....|+|++..    +++++..  ...|.+|++..++.
T Consensus       340 ~Laf~~~~~g~~~I~v~dl~~g~----~~~Lt~~~~~~~~p~wSpDG~~----L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        340 KIAFCSVIKGVRQICVYDLATGR----DYQLTTSPENKESPSWAIDSLH----LVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             EEEEEEcCCCCcEEEEEECCCCC----eEEccCCCCCccceEECCCCCE----EEEEECCCCCceEEEEECCCCCE
Confidence            66655443   369999998776    2233333345678899999853    4445544  34688888877653

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.89  E-value=1.1e-07  Score=78.48  Aligned_cols=260  Identities=13%  Similarity=0.214  Sum_probs=159.1

Q ss_pred             CcccEEEEEEeCC--eEEEEecCCeEEEEeCCCCc--ccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717          141 SSGSVKSVTFCDG--KIFTAHQDCKIRVWQLTPTK--HHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT  216 (437)
Q Consensus       141 h~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  216 (437)
                      ....|+++.|...  .+++|...|.|.++.-+...  ..+.+..+.++...+..+              +. ..-...|.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYL--------------kS-leieEKin   89 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYL--------------KS-LEIEEKIN   89 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhh--------------hh-ccHHHHhh
Confidence            4567899999844  48888888999999866432  111111121111100000              00 01234567


Q ss_pred             EEEeCC----CeEEEEECCCcEEEEECCCcc-------------------------------------eE-----EEe-e
Q 013717          217 GLAVNN----GLIYSVSWDKSLKIWRASDLR-------------------------------------CL-----ESI-K  249 (437)
Q Consensus       217 ~~~~~~----~~l~~~~~dg~i~iwd~~~~~-------------------------------------~~-----~~~-~  249 (437)
                      .+.|..    ..++..+.|.+|++|.+....                                     .+     +.+ .
T Consensus        90 ~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaN  169 (460)
T COG5170          90 AIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYAN  169 (460)
T ss_pred             heeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccc
Confidence            777754    677888899999999875320                                     00     001 2


Q ss_pred             cccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCcc-----ccEEEEEEccC-CCEEEEEeCCCcEEE
Q 013717          250 AHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHK-----SAVNALALSDD-GTVLFSGACDRSILV  323 (437)
Q Consensus       250 ~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~-~~~l~~~~~dg~i~i  323 (437)
                      .|.-.|+++.++.|...+....|-.|.+|++......... ..++.|.     .-|++..|+|. .+.+.-.+..|.|++
T Consensus       170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnI-VDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl  248 (460)
T COG5170         170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNI-VDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL  248 (460)
T ss_pred             cceeEeeeeeecCchheeeeccceeeeeccccccCCceEE-EeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence            4666788999988887666677889999988654433332 2333333     45889999994 457777788999999


Q ss_pred             EECCCCccceEEe----e--------eecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCC---
Q 013717          324 WDREDSANHMVVT----G--------ALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHT---  386 (437)
Q Consensus       324 ~d~~~~~~~~~~~----~--------~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~---  386 (437)
                      -|++.........    .        -+.+-...|..+.|+++  ++++-+. -+|+|||++..+  .++.+..-|.   
T Consensus       249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k--~pikTi~~h~~l~  325 (460)
T COG5170         249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK--NPIKTIPMHCDLM  325 (460)
T ss_pred             hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc--CCceeechHHHHH
Confidence            9998432111100    0        11122345566666654  6655443 579999999876  5677765553   


Q ss_pred             ---------CCe---eEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          387 ---------KPV---KSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       387 ---------~~v---~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                               +.|   ..+.|+.+..     .+++|+......+|-..+..
T Consensus       326 ~~l~d~YEnDaifdkFeisfSgd~~-----~v~sgsy~NNfgiyp~~ssg  370 (460)
T COG5170         326 DELNDVYENDAIFDKFEISFSGDDK-----HVLSGSYSNNFGIYPTDSSG  370 (460)
T ss_pred             HHHHhhhhccceeeeEEEEecCCcc-----cccccccccceeeeccccCC
Confidence                     223   3466777664     58899888888888755543

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=8.7e-08  Score=82.95  Aligned_cols=246  Identities=12%  Similarity=0.111  Sum_probs=165.1

Q ss_pred             CccCCeEEEEee-CCEEEEEecC-eEEEEeCCC-CceeeeeccccCCCCcccEEEEEEeCCe--EEEEec-CCeEEEEeC
Q 013717           96 GHKLPIGCIAVH-HNFLYAASSH-EINVYDRTG-TTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQ-DCKIRVWQL  169 (437)
Q Consensus        96 ~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~-dg~i~iwd~  169 (437)
                      =|.+-|+-+... .+++.+++-| .++.|.-.. .-.+.+..+   ..|-+.|.+++.+-++  +.+.+. |..++++|+
T Consensus         7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhF---raHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv   83 (558)
T KOG0882|consen    7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHF---RAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV   83 (558)
T ss_pred             cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhh---HHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence            588889888888 9999999999 999998765 223333333   5789999999998555  666666 999999999


Q ss_pred             CCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEE-EECCCcEEEEECCCcc-
Q 013717          170 TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYS-VSWDKSLKIWRASDLR-  243 (437)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~-~~~dg~i~iwd~~~~~-  243 (437)
                      .+-.....++...                            -.+.+. +..++    ..+++ .-.+|.+.++|-...- 
T Consensus        84 En~DminmiKL~~----------------------------lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~  134 (558)
T KOG0882|consen   84 ENFDMINMIKLVD----------------------------LPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC  134 (558)
T ss_pred             eccchhhhccccc----------------------------CCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcC
Confidence            8765443222110                            111111 11122    13333 3467899999975443 


Q ss_pred             -eEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcc-----------cceeeEEeeCccccEEEEEEccCCC
Q 013717          244 -CLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEK-----------RHALIATLEKHKSAVNALALSDDGT  310 (437)
Q Consensus       244 -~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~-----------~~~~~~~~~~~~~~i~~~~~~~~~~  310 (437)
                       ....-..|..+|.++.+.+-+. +++....|.|..|.....-+           ....+..+........++.|+|+|.
T Consensus       135 q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~  214 (558)
T KOG0882|consen  135 QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA  214 (558)
T ss_pred             ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC
Confidence             2333346899999999999998 88888899999997652100           0011222334556788999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCccceEEeee----------------------------ecccccc---eEEEEeeCCEEEEE
Q 013717          311 VLFSGACDRSILVWDREDSANHMVVTGA----------------------------LRGHGKA---ILCLINVAGLLMSG  359 (437)
Q Consensus       311 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------------------------~~~~~~~---i~~~~~~~~~l~~~  359 (437)
                      .+.+-+.|..|+++++++++....+...                            +..|...   -.++.-++++|+-|
T Consensus       215 qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~  294 (558)
T KOG0882|consen  215 QISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYG  294 (558)
T ss_pred             cccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEee
Confidence            9999999999999999976543322110                            1112211   13445567788888


Q ss_pred             eCCCcEEEeeCCCCC
Q 013717          360 SADRTVRIWQRGSDG  374 (437)
Q Consensus       360 ~~dg~i~iwd~~~~~  374 (437)
                      +.=| |++.++.++.
T Consensus       295 t~~g-ikvin~~tn~  308 (558)
T KOG0882|consen  295 TILG-IKVINLDTNT  308 (558)
T ss_pred             ccee-EEEEEeecCe
Confidence            8777 8888888765

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.88  E-value=5.4e-08  Score=91.45  Aligned_cols=183  Identities=13%  Similarity=0.188  Sum_probs=138.5

Q ss_pred             CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCcccc
Q 013717          108 HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVND  186 (437)
Q Consensus       108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  186 (437)
                      +..++.|+-. .+..+|+.+........+     ..+.|.-|+.++..+.+|...|+|.+-|.++.+....+        
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-----~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~--------  213 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNV-----SASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTF--------  213 (1118)
T ss_pred             Ccceeecchhhheeeeecccceeeeeeec-----cCCceEEEEecCcEEEeecccceEEeecCCcCceeeee--------
Confidence            5667777766 888999988543333332     23347777777777999999999999999887654443        


Q ss_pred             ceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEEC---------CCcEEEEECCCcceEEEeecccccEEE
Q 013717          187 RLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSW---------DKSLKIWRASDLRCLESIKAHEDAVNA  257 (437)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~  257 (437)
                                            ..|.+.|.++...++.|++++.         |..|+|||++..+.+.-+.-+.++ .-
T Consensus       214 ----------------------~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~f  270 (1118)
T KOG1275|consen  214 ----------------------DAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QF  270 (1118)
T ss_pred             ----------------------eccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hh
Confidence                                  3699999999999999999875         556899999988877766644443 55


Q ss_pred             EEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEEC
Q 013717          258 VAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDR  326 (437)
Q Consensus       258 ~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (437)
                      +.|+|.-.  +++++..|...+-|...-......+..+......+..++++++|+.++.|..+|.|.+|.-
T Consensus       271 lrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  271 LRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             hhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            77888664  9999999999999843322222234444555667999999999999999999999999983

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.87  E-value=4e-06  Score=85.65  Aligned_cols=201  Identities=12%  Similarity=0.124  Sum_probs=123.4

Q ss_pred             cEEEEEeCC--CeEEEEE-CCCcEEEEECCCcceEEEeecc-----------------cccEEEEEEec-CCe-EEEEeC
Q 013717          214 AVTGLAVNN--GLIYSVS-WDKSLKIWRASDLRCLESIKAH-----------------EDAVNAVAVSA-GGT-VYTGSA  271 (437)
Q Consensus       214 ~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~-l~~~~~  271 (437)
                      ....+++++  +.|+++. .++.|+++|..++. +.++.+.                 -..-..++++| ++. +++.+.
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~  703 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG  703 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence            346778875  5555554 45679999987754 3333210                 11235789999 556 677778


Q ss_pred             CCeEEEecCCCCcccceeeEEeeC---------------ccccEEEEEEccCCCEE-EEEeCCCcEEEEECCCCccceEE
Q 013717          272 DRKIRVWAKPFNEKRHALIATLEK---------------HKSAVNALALSDDGTVL-FSGACDRSILVWDREDSANHMVV  335 (437)
Q Consensus       272 dg~v~iwd~~~~~~~~~~~~~~~~---------------~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~  335 (437)
                      ++.|++||...+..     ..+.+               .-.....|+++|+|+.| ++-..++.|++||+.++......
T Consensus       704 ~~~I~v~d~~~g~v-----~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~  778 (1057)
T PLN02919        704 QHQIWEYNISDGVT-----RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA  778 (1057)
T ss_pred             CCeEEEEECCCCeE-----EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence            89999998764321     11110               11345679999999854 45556789999999865422111


Q ss_pred             ee---------eeccc--------ccceEEEE--eeCCEEEEEeCCCcEEEeeCCCCCCeeeee----------eecCCC
Q 013717          336 TG---------ALRGH--------GKAILCLI--NVAGLLMSGSADRTVRIWQRGSDGRFGCLA----------VLEGHT  386 (437)
Q Consensus       336 ~~---------~~~~~--------~~~i~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------~~~~h~  386 (437)
                      ..         .+...        ......++  .+++++++-..++.|++||..++.......          ...++-
T Consensus       779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l  858 (1057)
T PLN02919        779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQL  858 (1057)
T ss_pred             ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccccccc
Confidence            00         00000        01123444  445577888889999999998754111110          011222


Q ss_pred             CCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          387 KPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       387 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      .....|++++++.     ++++-+.++.|++||+.+++.
T Consensus       859 ~~P~GIavd~dG~-----lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        859 SEPAGLALGENGR-----LFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCceEEEEeCCCC-----EEEEECCCCEEEEEECCCCcc
Confidence            3577899999873     788888999999999988653

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=1.9e-07  Score=86.79  Aligned_cols=187  Identities=10%  Similarity=0.079  Sum_probs=128.2

Q ss_pred             CcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe
Q 013717          141 SSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV  220 (437)
Q Consensus       141 h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  220 (437)
                      ....+.|++++...++-|..+|.|++.+.+... ...                               ..|...    ..
T Consensus        38 ~~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~-~~~-------------------------------~~~s~~----~~   81 (846)
T KOG2066|consen   38 QNDAISCCAVHDKFFALGTHRGAVYLTTCQGNP-KTN-------------------------------FDHSSS----IL   81 (846)
T ss_pred             hhhHHHHHHhhcceeeeccccceEEEEecCCcc-ccc-------------------------------cccccc----cc
Confidence            345778888888889999999999999987442 111                               113332    23


Q ss_pred             CCCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecC------CeEEEEeCCCeEEEecCCCCcccceeeEEee
Q 013717          221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAG------GTVYTGSADRKIRVWAKPFNEKRHALIATLE  294 (437)
Q Consensus       221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~------~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  294 (437)
                      .+.++++|+.||+|.|..+-+.+...++. ...++.+++++|+      +++++|+.-| +.++.-+.-...  ....+.
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk--~~v~l~  157 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK--DSVVLS  157 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc--cceeee
Confidence            34899999999999999998888777765 6678999999998      2399999999 888753322111  111455


Q ss_pred             CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeec--ccccceEEEEeeCC-EEEEEeCCCcEEEeeCC
Q 013717          295 KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALR--GHGKAILCLINVAG-LLMSGSADRTVRIWQRG  371 (437)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~  371 (437)
                      ...++|.++.|.  |+++|-++.+| |+|||+...+....+.....  .....-..+.|.++ .|+.| ..-+|+|..++
T Consensus       158 ~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  158 EGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG-WGDSVKICSIK  233 (846)
T ss_pred             cCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEe-cCCeEEEEEEe
Confidence            677899999997  77999998877 99999987653332221110  00111245566666 55555 44468988887

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.87  E-value=4.7e-06  Score=73.12  Aligned_cols=166  Identities=14%  Similarity=0.126  Sum_probs=118.8

Q ss_pred             EEeCC-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCC-eEEEecCCCCcccceeeEEee
Q 013717          218 LAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADR-KIRVWAKPFNEKRHALIATLE  294 (437)
Q Consensus       218 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~  294 (437)
                      .+..+ ++++..+. |+..|.+...+-.++.  ++.+.|.-..+.-++. ++.|..|| .+-+||.+..     .+..+.
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~-----e~kr~e  398 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG-----EVKRIE  398 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc-----eEEEee
Confidence            33444 67777665 6777777655544443  4677788888887777 99999999 8999988754     356667


Q ss_pred             CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCC----cEEEe
Q 013717          295 KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADR----TVRIW  368 (437)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg----~i~iw  368 (437)
                      ..-+.|.++..+++|++++++.....|.++|++++.....    -+...+-|+.+.|+++  ++|-+--+|    .|++|
T Consensus       399 ~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~i----dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ikly  474 (668)
T COG4946         399 KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLI----DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLY  474 (668)
T ss_pred             CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEe----cccccceeEEEEEcCCceeEEEecCcceeeeeEEEE
Confidence            7788999999999999999999999999999998863322    2335677888888877  888776655    69999


Q ss_pred             eCCCCCCeeeeeeecCCCCCeeEEEEEccCC
Q 013717          369 QRGSDGRFGCLAVLEGHTKPVKSLTAVTEEG  399 (437)
Q Consensus       369 d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  399 (437)
                      |+..++-+ .+.+-.+|.   .+-+|.|++.
T Consensus       475 dm~~~Kiy-~vTT~ta~D---fsPaFD~d~r  501 (668)
T COG4946         475 DMDGGKIY-DVTTPTAYD---FSPAFDPDGR  501 (668)
T ss_pred             ecCCCeEE-EecCCcccc---cCcccCCCCc
Confidence            99986621 222223332   2335666664

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.87  E-value=3.7e-07  Score=84.52  Aligned_cols=242  Identities=10%  Similarity=0.067  Sum_probs=168.7

Q ss_pred             CcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe
Q 013717          141 SSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV  220 (437)
Q Consensus       141 h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  220 (437)
                      |...-.++.|++.+|++=+....|.+-|..+-+.++.+.                              .|...|+.+.|
T Consensus        14 ~~sN~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie------------------------------~h~s~V~~VrW   63 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIE------------------------------LHQSAVTSVRW   63 (1062)
T ss_pred             CcccccccccCccceEEEecCceEEEEehhhhhhhhccc------------------------------cCccceeEEEe
Confidence            455577889999886665556789999988776655544                              47788899888


Q ss_pred             CC--------------CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEec---CCe--EEEEeCCCeEEEecCC
Q 013717          221 NN--------------GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA---GGT--VYTGSADRKIRVWAKP  281 (437)
Q Consensus       221 ~~--------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~~--l~~~~~dg~v~iwd~~  281 (437)
                      .|              -.|+++...|.|.+||...+..+..+..+..++..+.|-+   +.+  +++-.....|.+|+..
T Consensus        64 ap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd  143 (1062)
T KOG1912|consen   64 APAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD  143 (1062)
T ss_pred             ccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc
Confidence            55              2577788889999999999988888888899999999875   333  7777778999999776


Q ss_pred             CCcccceeeEEeeCccccEEEEEEcc-CCCEEEEEeCCCcEEEEECCCCccce---EEeeeeccccc------------c
Q 013717          282 FNEKRHALIATLEKHKSAVNALALSD-DGTVLFSGACDRSILVWDREDSANHM---VVTGALRGHGK------------A  345 (437)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~~~------------~  345 (437)
                      +++    .+-..........|+.+.| |.+.+..-+..|.+.+-+.-..+..-   ...+....|..            .
T Consensus       144 tG~----k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns  219 (1062)
T KOG1912|consen  144 TGE----KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNS  219 (1062)
T ss_pred             CCc----eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhcccc
Confidence            665    3334444455667799999 67777777788888877754322111   11111111111            0


Q ss_pred             -------------eEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEec
Q 013717          346 -------------ILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGS  410 (437)
Q Consensus       346 -------------i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~  410 (437)
                                   ...++|++.  -++-......+.|+|++-..   ++....-..+.+.-+.+.|+..+   ..|++.-
T Consensus       220 ~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~---~l~vvpier~~akfv~vlP~~~r---d~LfclH  293 (1062)
T KOG1912|consen  220 TTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC---CLAVVPIERGGAKFVDVLPDPRR---DALFCLH  293 (1062)
T ss_pred             ccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc---eeEEEEeccCCcceeEeccCCCc---ceEEEEe
Confidence                         012333433  23334456679999998755   66666666777778888888765   4899999


Q ss_pred             CCCcEEEEeecc
Q 013717          411 LDGEIRAWQVSV  422 (437)
Q Consensus       411 ~dg~i~iw~~~~  422 (437)
                      .||.+.+|--+.
T Consensus       294 ~nG~ltirvrk~  305 (1062)
T KOG1912|consen  294 SNGRLTIRVRKE  305 (1062)
T ss_pred             cCCeEEEEEeec
Confidence            999999997665

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.85  E-value=4.1e-06  Score=71.39  Aligned_cols=215  Identities=14%  Similarity=0.112  Sum_probs=129.1

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCe
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSY  197 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (437)
                      .|..||..+++..-...+.  ......+......++.+++++.++.|..||..+++.........               
T Consensus         4 ~l~~~d~~tG~~~W~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~---------------   66 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYDLG--PGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG---------------   66 (238)
T ss_dssp             EEEEEETTTTEEEEEEECS--SSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS---------------
T ss_pred             EEEEEECCCCCEEEEEECC--CCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc---------------
Confidence            7889999886433222221  11233332233356778888999999999999997654443210               


Q ss_pred             eEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEe-eccc---ccEEEEEEec-CCeEEEEeCC
Q 013717          198 VTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESI-KAHE---DAVNAVAVSA-GGTVYTGSAD  272 (437)
Q Consensus       198 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~---~~v~~~~~~~-~~~l~~~~~d  272 (437)
                                  .....   .....+.++.+..++.|+.+|..+++.+... ....   .......... ++.++++..+
T Consensus        67 ------------~~~~~---~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (238)
T PF13360_consen   67 ------------PISGA---PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS  131 (238)
T ss_dssp             ------------CGGSG---EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC
T ss_pred             ------------cccce---eeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEecc
Confidence                        00011   2344477788888999999999999998884 3221   1112222222 3448888889


Q ss_pred             CeEEEecCCCCcccceeeEEeeCccc----------cEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccc
Q 013717          273 RKIRVWAKPFNEKRHALIATLEKHKS----------AVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH  342 (437)
Q Consensus       273 g~v~iwd~~~~~~~~~~~~~~~~~~~----------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  342 (437)
                      +.|..+|++++..    +........          .+..-....++ .++.++.++.+..+|+.+++...  ..  . .
T Consensus       132 g~l~~~d~~tG~~----~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w--~~--~-~  201 (238)
T PF13360_consen  132 GKLVALDPKTGKL----LWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW--SK--P-I  201 (238)
T ss_dssp             SEEEEEETTTTEE----EEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE--EE--C-S
T ss_pred             CcEEEEecCCCcE----EEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE--Ee--c-C
Confidence            9999999876653    333322221          11222222245 77777778864444999887432  11  1 1


Q ss_pred             ccceEEEEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717          343 GKAILCLINVAGLLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       343 ~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~  374 (437)
                      ..........++.|+.++.++.|..||+++++
T Consensus       202 ~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  202 SGIYSLPSVDGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             S-ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred             CCccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence            12222256677788888899999999999976

...

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.85  E-value=4.1e-06  Score=74.06  Aligned_cols=276  Identities=12%  Similarity=0.154  Sum_probs=162.9

Q ss_pred             ceeeccccccccccCCCc---------------eeEEecCCCcceeeeec-CccCC--eE-EEEee--CCEEEEEecCeE
Q 013717           61 SLQTLPSVPSLQKLSPDE---------------TINFSSASHLCINSVQL-GHKLP--IG-CIAVH--HNFLYAASSHEI  119 (437)
Q Consensus        61 ~~~~~~~~~~~~s~s~dg---------------~i~~~~~~~~~~~~~~~-~h~~~--V~-~l~~~--~~~l~s~~~d~v  119 (437)
                      .+.|+|....+.+-+..+               .+.+||... +..+..+ +-..+  .. -+.|+  ..|+|=-..+.+
T Consensus        76 ~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~s-g~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl  154 (561)
T COG5354          76 YLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIAS-GMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSL  154 (561)
T ss_pred             ecccCcccceeeeeccCCccChhhccCCccccCceeEEeccC-ceeEeeccccCCcccccceeeeeecchhhhhhccCeE
Confidence            446666666666554333               377787765 4444555 44444  33 45555  566665555589


Q ss_pred             EEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe----EE-----EEecCCeEEEEeCCCCcccccccccCccccceee
Q 013717          120 NVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK----IF-----TAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLR  190 (437)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----l~-----s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  190 (437)
                      .|+++ ++... ...+..  -....|....|+|.+    |+     ..+.++++++|.+..+..+.....+ ..+.....
T Consensus       155 ~i~e~-t~n~~-~~p~~~--lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf-k~~~~qLk  229 (561)
T COG5354         155 YIHEI-TDNIE-EHPFKN--LRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF-KVSGVQLK  229 (561)
T ss_pred             EEEec-CCccc-cCchhh--ccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE-eecccEEE
Confidence            99997 32222 222211  123567788888652    33     2467788999988755433222211 00010000


Q ss_pred             ecCCCCeeEEeeccceeeecCCCcEEEEEeC-----CCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe
Q 013717          191 FMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN-----NGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT  265 (437)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  265 (437)
                                       |......+.++...     ..++    ....+.|++++...+.... ...++|...+|.|.+.
T Consensus       230 -----------------W~~~g~~ll~l~~t~~ksnKsyf----gesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~  287 (561)
T COG5354         230 -----------------WQVLGKYLLVLVMTHTKSNKSYF----GESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSS  287 (561)
T ss_pred             -----------------EecCCceEEEEEEEeeeccccee----ccceEEEEeecccccceec-cccccceeeeecccCC
Confidence                             11111111111110     0111    2356888888754433332 5688999999999876


Q ss_pred             ---EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC---CcEEEEECCCCccceEEeeee
Q 013717          266 ---VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD---RSILVWDREDSANHMVVTGAL  339 (437)
Q Consensus       266 ---l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~  339 (437)
                         +++|..+-.+.++|++.+-     .  +......=+.+.|+|.+++++.++.|   |.+-+||...   .......+
T Consensus       288 ~F~vi~g~~pa~~s~~~lr~Nl-----~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~---rf~~~~~~  357 (561)
T COG5354         288 RFAVISGYMPASVSVFDLRGNL-----R--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG---RFKVAGAF  357 (561)
T ss_pred             ceeEEecccccceeecccccce-----E--EecCCcccccccccCcccEEEEecCCccccceEEeccCC---ceEEEEEe
Confidence               5666789999999987642     2  22344555678899999999997765   6899999864   33455556


Q ss_pred             cccccceEEEEeeCCEEEEEe------CCCcEEEeeCCCCC
Q 013717          340 RGHGKAILCLINVAGLLMSGS------ADRTVRIWQRGSDG  374 (437)
Q Consensus       340 ~~~~~~i~~~~~~~~~l~~~~------~dg~i~iwd~~~~~  374 (437)
                      .+.......++++++++.+..      .|..|+|||+....
T Consensus       358 ~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~  398 (561)
T COG5354         358 NGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK  398 (561)
T ss_pred             ecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence            666777777777777666653      37789999998755

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.83  E-value=4.9e-05  Score=67.04  Aligned_cols=261  Identities=14%  Similarity=0.096  Sum_probs=140.2

Q ss_pred             ceeEEecCCCcceeeeec-CccCCeEEEEeeCCEEEEEec----------C-eEEEEeCCCCceeeeeccccCCC----C
Q 013717           78 ETINFSSASHLCINSVQL-GHKLPIGCIAVHHNFLYAASS----------H-EINVYDRTGTTWTSINTFNDNDS----S  141 (437)
Q Consensus        78 g~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~l~s~~~----------d-~v~vwd~~~~~~~~~~~~~~~~~----h  141 (437)
                      +++.+.|.......-..- |...... +.-+++.|+.+..          + .|.+||..+.  +.+..+.....    .
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~--~~~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH--LPIADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC--cEEeEEccCCCchhhc
Confidence            788888887744443333 5444432 3333777777766          3 9999999994  44444421111    1


Q ss_pred             cccEEEEEEeCCe--EEEEe-c-CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEE
Q 013717          142 SGSVKSVTFCDGK--IFTAH-Q-DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTG  217 (437)
Q Consensus       142 ~~~v~~l~~~~~~--l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  217 (437)
                      ......+++++++  ++... . +..|.+.|+.+++....+.. +                              +...-
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p------------------------------~~~~v  152 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-P------------------------------DCYHI  152 (352)
T ss_pred             cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-C------------------------------CCcEE
Confidence            2334477788665  54443 3 78999999998876554432 0                              01111


Q ss_pred             EEeCCCeEEEEECCCcEEEEECCC-cce-EE---Eeec-----ccccEEEEEEec-CCeEEEEeCCCeEEEecCCCCccc
Q 013717          218 LAVNNGLIYSVSWDKSLKIWRASD-LRC-LE---SIKA-----HEDAVNAVAVSA-GGTVYTGSADRKIRVWAKPFNEKR  286 (437)
Q Consensus       218 ~~~~~~~l~~~~~dg~i~iwd~~~-~~~-~~---~~~~-----~~~~v~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~  286 (437)
                      ....+.....-+.||......+.+ ++. ..   .+..     ...+    .+.+ +|+.+-.+.+|.|.+.|+......
T Consensus       153 y~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~eG~V~~id~~~~~~~  228 (352)
T TIGR02658       153 FPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYTGKIFQIDLSSGDAK  228 (352)
T ss_pred             EEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecCCeEEEEecCCCcce
Confidence            111121111222333333322211 110 01   1111     0112    3455 777444445599999997543221


Q ss_pred             -ceeeEEeeC-------ccccEEEEEEccCCCEEEEEeC----------CCcEEEEECCCCccceEEeeeecccccceEE
Q 013717          287 -HALIATLEK-------HKSAVNALALSDDGTVLFSGAC----------DRSILVWDREDSANHMVVTGALRGHGKAILC  348 (437)
Q Consensus       287 -~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~  348 (437)
                       ......+..       ..+.+.-++++++++++++...          .+.|.++|..+.+....+   ..++...-..
T Consensus       229 ~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i---~vG~~~~~ia  305 (352)
T TIGR02658       229 FLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKI---ELGHEIDSIN  305 (352)
T ss_pred             ecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEE---eCCCceeeEE
Confidence             112222111       2233445999999998888532          257999999877643332   2234333344


Q ss_pred             EEeeCC-EEEEEe-CCCcEEEeeCCCCCCeeeeeee
Q 013717          349 LINVAG-LLMSGS-ADRTVRIWQRGSDGRFGCLAVL  382 (437)
Q Consensus       349 ~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~  382 (437)
                      ++.++. +|++.. .++.|.++|..+++   .+..+
T Consensus       306 vS~Dgkp~lyvtn~~s~~VsViD~~t~k---~i~~i  338 (352)
T TIGR02658       306 VSQDAKPLLYALSTGDKTLYIFDAETGK---ELSSV  338 (352)
T ss_pred             ECCCCCeEEEEeCCCCCcEEEEECcCCe---EEeee
Confidence            555556 666555 57889999999877   45544

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.82  E-value=7.3e-06  Score=67.52  Aligned_cols=199  Identities=13%  Similarity=0.185  Sum_probs=119.8

Q ss_pred             CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccc
Q 013717          108 HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVN  185 (437)
Q Consensus       108 ~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  185 (437)
                      |+.||.--+..|.|=..++.-...+......+...-.=+.++|++|.  |+.+...|+|+++|+............... 
T Consensus         9 Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~-   87 (282)
T PF15492_consen    9 GKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFP-   87 (282)
T ss_pred             CcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccC-
Confidence            77777666557766666553222222222223334456789999887  888889999999999864322111100000 


Q ss_pred             cceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--------CeEEEEECCCcEEEEECCC-----cceEEEee---
Q 013717          186 DRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--------GLIYSVSWDKSLKIWRASD-----LRCLESIK---  249 (437)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~l~~~~~dg~i~iwd~~~-----~~~~~~~~---  249 (437)
                                             ..-...|..+.|-+        ..|++...+|.++-|-+..     .+....+.   
T Consensus        88 -----------------------~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~  144 (282)
T PF15492_consen   88 -----------------------GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSS  144 (282)
T ss_pred             -----------------------CccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecc
Confidence                                   01234455555533        3566677788888776532     23334433   


Q ss_pred             cccccEEEEEEecCCe-EEEEeC-CC----------eEEEecCCCCcccce-----------------eeE-----Ee--
Q 013717          250 AHEDAVNAVAVSAGGT-VYTGSA-DR----------KIRVWAKPFNEKRHA-----------------LIA-----TL--  293 (437)
Q Consensus       250 ~~~~~v~~~~~~~~~~-l~~~~~-dg----------~v~iwd~~~~~~~~~-----------------~~~-----~~--  293 (437)
                      .+...|.++.++|.-+ |++|+. ..          -+..|.+-.+..-.+                 ..+     .+  
T Consensus       145 ~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~  224 (282)
T PF15492_consen  145 HYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSR  224 (282)
T ss_pred             cCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeec
Confidence            2467899999999877 555543 21          255664432211100                 000     01  


Q ss_pred             -eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 013717          294 -EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSA  330 (437)
Q Consensus       294 -~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  330 (437)
                       ......|..|..+|||+.|++...+|.|.+|++.+-+
T Consensus       225 ~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  225 QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence             1235679999999999999999999999999997654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.82  E-value=3.7e-05  Score=65.73  Aligned_cols=215  Identities=12%  Similarity=0.125  Sum_probs=128.1

Q ss_pred             EEEEeC--Ce-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC-C
Q 013717          147 SVTFCD--GK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN-N  222 (437)
Q Consensus       147 ~l~~~~--~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~  222 (437)
                      +++|.+  +. +++--..+.|..|+..+++....                                ... ....+++. +
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------------------~~~-~~~G~~~~~~   50 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------------------DLP-GPNGMAFDRP   50 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------------------ESS-SEEEEEEECT
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------------------ecC-CCceEEEEcc
Confidence            566774  33 44444678899999887653221                                011 25666676 4


Q ss_pred             -CeEEEEECCCcEEEEECCCcceEEEeec-----ccccEEEEEEecCCeEEEEeC-C--------CeEEEecCCCCcccc
Q 013717          223 -GLIYSVSWDKSLKIWRASDLRCLESIKA-----HEDAVNAVAVSAGGTVYTGSA-D--------RKIRVWAKPFNEKRH  287 (437)
Q Consensus       223 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~l~~~~~-d--------g~v~iwd~~~~~~~~  287 (437)
                       +.++.+..++ +.++|..+++.......     .....+.+++.|+|.+..+.. .        |.|..++.. ..   
T Consensus        51 ~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~---  125 (246)
T PF08450_consen   51 DGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK---  125 (246)
T ss_dssp             TSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE---
T ss_pred             CCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce---
Confidence             7777777654 56669988865444432     345688999999999555443 2        456666554 11   


Q ss_pred             eeeEEeeCccccEEEEEEccCCCEEE-EEeCCCcEEEEECCCCccceE---EeeeecccccceEEEEe--eCCEEEEEeC
Q 013717          288 ALIATLEKHKSAVNALALSDDGTVLF-SGACDRSILVWDREDSANHMV---VTGALRGHGKAILCLIN--VAGLLMSGSA  361 (437)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~~~~i~~~~~--~~~~l~~~~~  361 (437)
                        .......-...+.|+|+|+++.|+ +-+..+.|..|++........   ....+....+..-.++.  ++++.++...
T Consensus       126 --~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~  203 (246)
T PF08450_consen  126 --VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG  203 (246)
T ss_dssp             --EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET
T ss_pred             --EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC
Confidence              222222345678999999998775 556788899999865433111   11122222222444444  4556666677


Q ss_pred             CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEE-ccCCCCceEEEEEe
Q 013717          362 DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAV-TEEGQNGVVSVFSG  409 (437)
Q Consensus       362 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~~~~~~l~s~  409 (437)
                      .+.|.+++.+ ++   .+..+.-....+++++|. ++..    .+++|.
T Consensus       204 ~~~I~~~~p~-G~---~~~~i~~p~~~~t~~~fgg~~~~----~L~vTt  244 (246)
T PF08450_consen  204 GGRIVVFDPD-GK---LLREIELPVPRPTNCAFGGPDGK----TLYVTT  244 (246)
T ss_dssp             TTEEEEEETT-SC---EEEEEE-SSSSEEEEEEESTTSS----EEEEEE
T ss_pred             CCEEEEECCC-cc---EEEEEcCCCCCEEEEEEECCCCC----EEEEEe
Confidence            8899999988 55   455554444589999995 3333    355554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.81  E-value=2e-05  Score=80.61  Aligned_cols=251  Identities=14%  Similarity=0.082  Sum_probs=144.5

Q ss_pred             eeecc-ccccccccCCCceeEEecCCCcceeeeec-C--c------------cCCeEEEEee--CCEEEEEec-C-eEEE
Q 013717           62 LQTLP-SVPSLQKLSPDETINFSSASHLCINSVQL-G--H------------KLPIGCIAVH--HNFLYAASS-H-EINV  121 (437)
Q Consensus        62 ~~~~~-~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~--h------------~~~V~~l~~~--~~~l~s~~~-d-~v~v  121 (437)
                      +...+ ......+-+.++.|.+++.+...  +..+ +  .            -..-..++++  ++.|+.+.. + .|++
T Consensus       573 vavd~~~g~lyVaDs~n~rI~v~d~~G~~--i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~  650 (1057)
T PLN02919        573 LAIDLLNNRLFISDSNHNRIVVTDLDGNF--IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE  650 (1057)
T ss_pred             EEEECCCCeEEEEECCCCeEEEEeCCCCE--EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence            34443 23455555677788888775432  2222 1  1            1235778887  666666554 4 8999


Q ss_pred             EeCCCCceeeeecccc----CCC-------CcccEEEEEEeC-Ce--EEEEecCCeEEEEeCCCCcccccccccCccccc
Q 013717          122 YDRTGTTWTSINTFND----NDS-------SSGSVKSVTFCD-GK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDR  187 (437)
Q Consensus       122 wd~~~~~~~~~~~~~~----~~~-------h~~~v~~l~~~~-~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  187 (437)
                      +|..++....+..-..    ..+       .-.....+++++ +.  +++...++.|++||..++.......        
T Consensus       651 id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G--------  722 (1057)
T PLN02919        651 IDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSG--------  722 (1057)
T ss_pred             EecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEec--------
Confidence            9998754332211000    000       012346789986 33  6666788999999987764221100        


Q ss_pred             eeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--C-eEEEEECCCcEEEEECCCcceEEEeec--------------
Q 013717          188 LLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--G-LIYSVSWDKSLKIWRASDLRCLESIKA--------------  250 (437)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------  250 (437)
                             ++..... .........-.....+++++  + ++++-..++.|++||+.++.......+              
T Consensus       723 -------~G~~~~~-~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~  794 (1057)
T PLN02919        723 -------DGYERNL-NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDH  794 (1057)
T ss_pred             -------CCccccC-CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCC
Confidence                   0000000 00000001113456788887  4 445556679999999987653211100              


Q ss_pred             -------ccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEE----------eeCccccEEEEEEccCCCEE
Q 013717          251 -------HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIAT----------LEKHKSAVNALALSDDGTVL  312 (437)
Q Consensus       251 -------~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~----------~~~~~~~i~~~~~~~~~~~l  312 (437)
                             .-.....++++++|. +++-+.++.|++||..+.... .....          ..+.-.....|+++++|+++
T Consensus       795 dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ly  873 (1057)
T PLN02919        795 DGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLF  873 (1057)
T ss_pred             CCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEE
Confidence                   011235889999998 777788999999998643211 00000          01112357889999999988


Q ss_pred             EEEeCCCcEEEEECCCCcc
Q 013717          313 FSGACDRSILVWDREDSAN  331 (437)
Q Consensus       313 ~~~~~dg~i~i~d~~~~~~  331 (437)
                      ++-+.++.|++||+++++.
T Consensus       874 VaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        874 VADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEECCCCEEEEEECCCCcc
Confidence            8888999999999987653

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=2.2e-07  Score=86.41  Aligned_cols=184  Identities=17%  Similarity=0.189  Sum_probs=129.5

Q ss_pred             CCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCccccee
Q 013717          211 HGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHAL  289 (437)
Q Consensus       211 ~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~  289 (437)
                      ....+.|++++..+++.|..+|.|++++.... . .+...|...      ..+|. +++|+.||+|.|..+-+...    
T Consensus        38 ~~D~is~~av~~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~----  105 (846)
T KOG2066|consen   38 QNDAISCCAVHDKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE----  105 (846)
T ss_pred             hhhHHHHHHhhcceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc----
Confidence            34567788888899999999999999997543 2 333334433      55677 99999999999987755432    


Q ss_pred             eEEeeCccccEEEEEEccC-----CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCc
Q 013717          290 IATLEKHKSAVNALALSDD-----GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRT  364 (437)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~  364 (437)
                      ...+ .-..++.+++++|+     .+.+++|+.-| +.++.-+-.......  ......+.|.++.|.|+++|=++.+| 
T Consensus       106 ~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v--~l~~~eG~I~~i~W~g~lIAWand~G-  180 (846)
T KOG2066|consen  106 ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV--VLSEGEGPIHSIKWRGNLIAWANDDG-  180 (846)
T ss_pred             ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--eeecCccceEEEEecCcEEEEecCCC-
Confidence            2222 24578999999997     57899999988 878764322211111  23456789999999999999999888 


Q ss_pred             EEEeeCCCCCCeeeeeeecCCCC------CeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          365 VRIWQRGSDGRFGCLAVLEGHTK------PVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       365 i~iwd~~~~~~~~~~~~~~~h~~------~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      |+|||+..++.   +..+.....      --..+.|.++.      .|+-|=.| +|+|..++
T Consensus       181 v~vyd~~~~~~---l~~i~~p~~~~R~e~fpphl~W~~~~------~LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  181 VKVYDTPTRQR---LTNIPPPSQSVRPELFPPHLHWQDED------RLVIGWGD-SVKICSIK  233 (846)
T ss_pred             cEEEeccccce---eeccCCCCCCCCcccCCCceEecCCC------eEEEecCC-eEEEEEEe
Confidence            99999998773   222222112      23467788776      46655444 89999988

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.78  E-value=2.6e-05  Score=78.30  Aligned_cols=236  Identities=14%  Similarity=0.176  Sum_probs=150.8

Q ss_pred             CcccEEEEEEeCCe--EEEEecCCeEEEE----eCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCc
Q 013717          141 SSGSVKSVTFCDGK--IFTAHQDCKIRVW----QLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA  214 (437)
Q Consensus       141 h~~~v~~l~~~~~~--l~s~~~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (437)
                      ....|.++.+..+.  ++.+..+|.|.+.    +..+...                               .+...-...
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-------------------------------E~VG~vd~G  122 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-------------------------------EIVGSVDSG  122 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-------------------------------EEEEEEcCc
Confidence            45789999998554  8889999999999    4433321                               111235678


Q ss_pred             EEEEEeCC--CeEEEEECCCcEEEEECCCcceE------------------------EEeec------------------
Q 013717          215 VTGLAVNN--GLIYSVSWDKSLKIWRASDLRCL------------------------ESIKA------------------  250 (437)
Q Consensus       215 v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~------------------------~~~~~------------------  250 (437)
                      |.+++|+|  ..++.++.++++.+.+- +.+.+                        ..|++                  
T Consensus       123 I~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~  201 (928)
T PF04762_consen  123 ILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKV  201 (928)
T ss_pred             EEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCcc
Confidence            99999999  88888888888887642 21111                        11100                  


Q ss_pred             ------ccccEEEEEEecCCe-EEEEeC---C---CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC
Q 013717          251 ------HEDAVNAVAVSAGGT-VYTGSA---D---RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC  317 (437)
Q Consensus       251 ------~~~~v~~~~~~~~~~-l~~~~~---d---g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  317 (437)
                            ..+.-..|+|-.||. +|+.+.   .   ..++||+-+     +.+....+.-.+--.+++|.|.|++||+...
T Consensus       202 d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-----G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~  276 (928)
T PF04762_consen  202 DEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-----GELQSTSEPVDGLEGALSWRPSGNLIASSQR  276 (928)
T ss_pred             ccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-----ceEEeccccCCCccCCccCCCCCCEEEEEEE
Confidence                  222445788999998 666654   2   579999754     2333333333344457899999999998765


Q ss_pred             ---CCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCC-CCCeeE
Q 013717          318 ---DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGH-TKPVKS  391 (437)
Q Consensus       318 ---dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~  391 (437)
                         ...|.+|.-. |-+...+.-.+......|..+.|+.+  .||..-.|. |.+|-..+-. |.+.+.+.-. ...+..
T Consensus       277 ~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH-WYLKqei~~~~~~~~~~  353 (928)
T PF04762_consen  277 LPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH-WYLKQEIRFSSSESVNF  353 (928)
T ss_pred             cCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE-EEEEEEEEccCCCCCCc
Confidence               3456777743 33333344444445667888888866  777766555 9999887644 4445555432 334566


Q ss_pred             EEEEccCCCCceEEEEEecCCCcEEEEee
Q 013717          392 LTAVTEEGQNGVVSVFSGSLDGEIRAWQV  420 (437)
Q Consensus       392 l~~~~~~~~~~~~~l~s~~~dg~i~iw~~  420 (437)
                      +.|+|..+.    .|.....+|.+..+++
T Consensus       354 ~~Wdpe~p~----~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  354 VKWDPEKPL----RLHVLTSNGQYEIYDF  378 (928)
T ss_pred             eEECCCCCC----EEEEEecCCcEEEEEE
Confidence            999998765    5666666677655443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.76  E-value=4.7e-08  Score=56.48  Aligned_cols=38  Identities=42%  Similarity=0.708  Sum_probs=36.1

Q ss_pred             eeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717          288 ALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD  325 (437)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (437)
                      +++..+.+|...|.+|+|+|++++|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.75  E-value=4.4e-08  Score=56.61  Aligned_cols=38  Identities=32%  Similarity=0.672  Sum_probs=35.4

Q ss_pred             eeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717          377 GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       377 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~  419 (437)
                      +++.++.+|.+.|++|+|+|++.     +|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~-----~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGN-----FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSS-----EEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccc-----cceeeCCCCEEEEEC
Confidence            57899999999999999999974     899999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=3.3e-07  Score=79.47  Aligned_cols=269  Identities=15%  Similarity=0.113  Sum_probs=171.2

Q ss_pred             cccccccCCCceeEEecCCC--cceeeeec-CccCCeEEEEee--CCEEEEEec-C-eEEEEeCCCCceeeeeccccCCC
Q 013717           68 VPSLQKLSPDETINFSSASH--LCINSVQL-GHKLPIGCIAVH--HNFLYAASS-H-EINVYDRTGTTWTSINTFNDNDS  140 (437)
Q Consensus        68 ~~~~~s~s~dg~i~~~~~~~--~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~-d-~v~vwd~~~~~~~~~~~~~~~~~  140 (437)
                      .+...+++.||.+.+|....  ....+..+ .|...|.+++.+  +.++.|.+. | .++++|+++-.......+   .-
T Consensus        20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL---~~   96 (558)
T KOG0882|consen   20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKL---VD   96 (558)
T ss_pred             hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccc---cc
Confidence            35677899999999998855  33444444 899999999988  778888777 8 999999988433322222   11


Q ss_pred             CcccEEEEEEeCCe--EEE--EecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717          141 SSGSVKSVTFCDGK--IFT--AHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT  216 (437)
Q Consensus       141 h~~~v~~l~~~~~~--l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  216 (437)
                      -.+.+..+.-.++.  +++  .-.+|.+.++|-....+......                            .-|..+|.
T Consensus        97 lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk----------------------------klH~sPV~  148 (558)
T KOG0882|consen   97 LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK----------------------------KLHFSPVK  148 (558)
T ss_pred             CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec----------------------------ccccCceE
Confidence            22333322222322  332  34578899998765432222111                            23899999


Q ss_pred             EEEeCC--CeEEEEECCCcEEEEECCC------cceEEE---------eecccccEEEEEEecCCe-EEEEeCCCeEEEe
Q 013717          217 GLAVNN--GLIYSVSWDKSLKIWRASD------LRCLES---------IKAHEDAVNAVAVSAGGT-VYTGSADRKIRVW  278 (437)
Q Consensus       217 ~~~~~~--~~l~~~~~dg~i~iwd~~~------~~~~~~---------~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iw  278 (437)
                      ++.+.+  +.+++....|.|.-|....      .+....         +...+....++.|+|++. +.+-..|..|+++
T Consensus       149 ~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F  228 (558)
T KOG0882|consen  149 KIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGF  228 (558)
T ss_pred             EEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEE
Confidence            999998  8888888899999998872      111111         123456788999999999 8888899999999


Q ss_pred             cCCCCccccee----------------------------eEEeeCccc-cEEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 013717          279 AKPFNEKRHAL----------------------------IATLEKHKS-AVNALALSDDGTVLFSGACDRSILVWDREDS  329 (437)
Q Consensus       279 d~~~~~~~~~~----------------------------~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (437)
                      +..++......                            .+.++.|.. .-+.+.|...|++|+-|+.=| |++.++.++
T Consensus       229 ~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn  307 (558)
T KOG0882|consen  229 VFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTN  307 (558)
T ss_pred             EeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecC
Confidence            87654311100                            001112222 235678999999999988776 889998876


Q ss_pred             ccceEEeee----------e-------------cccccceEEEEeeCCEEEEEeCCCcEEEe
Q 013717          330 ANHMVVTGA----------L-------------RGHGKAILCLINVAGLLMSGSADRTVRIW  368 (437)
Q Consensus       330 ~~~~~~~~~----------~-------------~~~~~~i~~~~~~~~~l~~~~~dg~i~iw  368 (437)
                      .....+-..          +             .+...+...+..++..++++-....+++|
T Consensus       308 ~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf  369 (558)
T KOG0882|consen  308 TVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF  369 (558)
T ss_pred             eEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence            533322110          0             00111222333445577777778888888

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.67  E-value=0.00017  Score=61.76  Aligned_cols=209  Identities=13%  Similarity=0.041  Sum_probs=126.3

Q ss_pred             EEEee---CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe-CCe-EEEEecCCeEEEEeCCCCcccc
Q 013717          103 CIAVH---HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC-DGK-IFTAHQDCKIRVWQLTPTKHHK  176 (437)
Q Consensus       103 ~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~-l~s~~~dg~i~iwd~~~~~~~~  176 (437)
                      +.+|.   +.++++--.+ .|..|+..++.......        .....+++. ++. ++.+..++ +.++|..+++...
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~--------~~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~   74 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL--------PGPNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTV   74 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES--------SSEEEEEEECTTSEEEEEETTC-EEEEETTTTEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec--------CCCceEEEEccCCEEEEEEcCc-eEEEecCCCcEEE
Confidence            45566   4555555556 99999999864333221        116777777 444 77776655 5556988775433


Q ss_pred             cccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEE-CC--------CcEEEEECCCcceEE
Q 013717          177 LKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVS-WD--------KSLKIWRASDLRCLE  246 (437)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~-~d--------g~i~iwd~~~~~~~~  246 (437)
                      .......                         .......+++++++ ..++.+. ..        |.|..++.. ++...
T Consensus        75 ~~~~~~~-------------------------~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~  128 (246)
T PF08450_consen   75 LADLPDG-------------------------GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV  128 (246)
T ss_dssp             EEEEETT-------------------------CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE
T ss_pred             EeeccCC-------------------------CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE
Confidence            3221100                         00345678899988 4344443 22        557777776 44433


Q ss_pred             EeecccccEEEEEEecCCe-E-EEEeCCCeEEEecCCCCcccc---eeeEEeeCccccEEEEEEccCCCEEEEEeCCCcE
Q 013717          247 SIKAHEDAVNAVAVSAGGT-V-YTGSADRKIRVWAKPFNEKRH---ALIATLEKHKSAVNALALSDDGTVLFSGACDRSI  321 (437)
Q Consensus       247 ~~~~~~~~v~~~~~~~~~~-l-~~~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  321 (437)
                      .. ..-...+.|+|+|+++ | ++-+..+.|..|++.......   .....+....+..-.+++..+|++.++....+.|
T Consensus       129 ~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I  207 (246)
T PF08450_consen  129 VA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRI  207 (246)
T ss_dssp             EE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEE
T ss_pred             Ee-cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEE
Confidence            33 3455678999999997 4 466778899999885433211   1222233333458899999999988888889999


Q ss_pred             EEEECCCCccceEEeeeecccccceEEEEee
Q 013717          322 LVWDREDSANHMVVTGALRGHGKAILCLINV  352 (437)
Q Consensus       322 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~  352 (437)
                      .++|.+ ++....    +.-....+++++|.
T Consensus       208 ~~~~p~-G~~~~~----i~~p~~~~t~~~fg  233 (246)
T PF08450_consen  208 VVFDPD-GKLLRE----IELPVPRPTNCAFG  233 (246)
T ss_dssp             EEEETT-SCEEEE----EE-SSSSEEEEEEE
T ss_pred             EEECCC-ccEEEE----EcCCCCCEEEEEEE
Confidence            999987 543222    22223467788874

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.65  E-value=9.6e-05  Score=61.10  Aligned_cols=191  Identities=9%  Similarity=0.109  Sum_probs=116.1

Q ss_pred             CCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeec-------ccccEEEEEEecCC-------eEEEEeCCCeE
Q 013717          212 GDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKA-------HEDAVNAVAVSAGG-------TVYTGSADRKI  275 (437)
Q Consensus       212 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~-------~l~~~~~dg~v  275 (437)
                      ...-..++|+|  .+||.+...|+|++||+.. ..+..+..       ....|..|.|.+..       .|++-..+|.+
T Consensus        43 ~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L  121 (282)
T PF15492_consen   43 NPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL  121 (282)
T ss_pred             CchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence            34456789998  8889999999999999865 33444431       23456677665422       37788888888


Q ss_pred             EEecCCCC-cccceeeEEee---CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEe
Q 013717          276 RVWAKPFN-EKRHALIATLE---KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLIN  351 (437)
Q Consensus       276 ~iwd~~~~-~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~  351 (437)
                      +-|-+... ....+....+.   .+...|.++.++|..++|++|+....      +++.        ..+....++++..
T Consensus       122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~--------s~a~~~GLtaWRi  187 (282)
T PF15492_consen  122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM--------SKASSCGLTAWRI  187 (282)
T ss_pred             eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc--------ccccccCceEEEE
Confidence            88865322 12233333333   24678999999999888887765432      1100        0112233344433


Q ss_pred             eC---CEE-EEEeCCCc------EEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          352 VA---GLL-MSGSADRT------VRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       352 ~~---~~l-~~~~~dg~------i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      -.   .+. ++...|+.      ..+|.+-+.+   ...........|..|..+|++.     +|++...+|.|.+|++.
T Consensus       188 L~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~---~fs~~~~~~d~i~kmSlSPdg~-----~La~ih~sG~lsLW~iP  259 (282)
T PF15492_consen  188 LSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK---FFSRQGQEQDGIFKMSLSPDGS-----LLACIHFSGSLSLWEIP  259 (282)
T ss_pred             cCCCCcEEEccccCccccccccccceeecccee---eeeccccCCCceEEEEECCCCC-----EEEEEEcCCeEEEEecC
Confidence            21   122 22332322      1334333211   2222233567899999999995     89999999999999998


Q ss_pred             cCCC
Q 013717          422 VSCP  425 (437)
Q Consensus       422 ~~~~  425 (437)
                      +-..
T Consensus       260 sL~~  263 (282)
T PF15492_consen  260 SLRL  263 (282)
T ss_pred             cchh
Confidence            7654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.65  E-value=2e-06  Score=81.33  Aligned_cols=186  Identities=10%  Similarity=0.117  Sum_probs=131.6

Q ss_pred             CCCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCcccc
Q 013717          221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSA  299 (437)
Q Consensus       221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  299 (437)
                      .+..++.|+....+..+|+++.+..+...-..+.|+-|..  +++ +.+|...|+|.+-|.++.    +.++++..|.+.
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~----~~iht~~aHs~s  219 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF----ETIHTFDAHSGS  219 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcC----ceeeeeeccccc
Confidence            5577778888888999999998887776644545655554  556 899999999999977654    578899999999


Q ss_pred             EEEEEEccCCCEEEEEeC---------CCcEEEEECCCCccceEEeeeecccccceEEEEeeC---CEEEEEeCCCcEEE
Q 013717          300 VNALALSDDGTVLFSGAC---------DRSILVWDREDSANHMVVTGALRGHGKAILCLINVA---GLLMSGSADRTVRI  367 (437)
Q Consensus       300 i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~i~i  367 (437)
                      |.++..  .|+.|++++.         |..|+|||++..+....    +.-+.++ .-+.+.+   ..+++++..|...+
T Consensus       220 iSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P----I~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~  292 (1118)
T KOG1275|consen  220 ISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP----IQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQF  292 (1118)
T ss_pred             eeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCC----cccccCc-hhhhhcccccceEEEEecccceee
Confidence            987666  4888988865         56789999986543221    2212221 2223333   38899999999999


Q ss_pred             eeCCCCC-CeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          368 WQRGSDG-RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       368 wd~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      -|..+-. ...-+.........+.++.++++++     .++-|..+|.|.+|. +.+.|
T Consensus       293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~-----alafgd~~g~v~~wa-~~~~P  345 (1118)
T KOG1275|consen  293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGD-----ALAFGDHEGHVNLWA-DRPQP  345 (1118)
T ss_pred             ccccccCCCccceeEEccCCCcceeEEecCCCc-----eEEEecccCcEeeec-CCCCC
Confidence            9933221 1122333344455699999999885     799999999999998 44443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.62  E-value=3.7e-05  Score=68.99  Aligned_cols=271  Identities=10%  Similarity=0.119  Sum_probs=159.7

Q ss_pred             EEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEe-----------cCCeEEE
Q 013717          102 GCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAH-----------QDCKIRV  166 (437)
Q Consensus       102 ~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~-----------~dg~i~i  166 (437)
                      +-+.||  |.||+|--..-|.+|--++  +..+..+    .| ..|.-+.|+|..  |+|=+           ....++|
T Consensus       214 tyv~wSP~GTYL~t~Hk~GI~lWGG~~--f~r~~RF----~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I  286 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQGIALWGGES--FDRIQRF----YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII  286 (698)
T ss_pred             eeEEecCCceEEEEEeccceeeecCcc--HHHHHhc----cC-CCceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence            456677  8999998888999998776  5666665    35 458889999775  76654           2257999


Q ss_pred             EeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcce
Q 013717          167 WQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRC  244 (437)
Q Consensus       167 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~  244 (437)
                      ||+.+|...+.+..+...                         ...-++  +.|+.  +++|--.. ..|.||+.....+
T Consensus       287 WDI~tG~lkrsF~~~~~~-------------------------~~~WP~--frWS~DdKy~Arm~~-~sisIyEtpsf~l  338 (698)
T KOG2314|consen  287 WDIATGLLKRSFPVIKSP-------------------------YLKWPI--FRWSHDDKYFARMTG-NSISIYETPSFML  338 (698)
T ss_pred             EEccccchhcceeccCCC-------------------------ccccce--EEeccCCceeEEecc-ceEEEEecCceee
Confidence            999999876665533110                         011122  34443  66665555 5799999877554


Q ss_pred             EEEeecccccEEEEEEecCCe-EEEEeCC-----CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe--
Q 013717          245 LESIKAHEDAVNAVAVSAGGT-VYTGSAD-----RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA--  316 (437)
Q Consensus       245 ~~~~~~~~~~v~~~~~~~~~~-l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--  316 (437)
                      +..-...-..|....|+|.+. ||.-...     ..+.+-.+...    ..++.-.-++-.=..+-|-.+|.+|+.--  
T Consensus       339 ld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~----~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR  414 (698)
T KOG2314|consen  339 LDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSK----REIRTKNLFNVSDCKLHWQKSGDYLCVKVDR  414 (698)
T ss_pred             ecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCcc----ceeeeccceeeeccEEEeccCCcEEEEEEEe
Confidence            433333456788899999866 3322211     12333322211    12222222222223455666777776531  


Q ss_pred             --------CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeC---CCcEEEeeCC-CCCCeeeeeee
Q 013717          317 --------CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSA---DRTVRIWQRG-SDGRFGCLAVL  382 (437)
Q Consensus       317 --------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~---dg~i~iwd~~-~~~~~~~~~~~  382 (437)
                              .-..+-|+.++....+...    ..-...|..++|.|.  .+++-+.   ..++.+|.++ ....+.++..+
T Consensus       415 ~tK~~~~g~f~n~eIfrireKdIpve~----velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~  490 (698)
T KOG2314|consen  415 HTKSKVKGQFSNLEIFRIREKDIPVEV----VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL  490 (698)
T ss_pred             eccccccceEeeEEEEEeeccCCCcee----eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh
Confidence                    1123455555433221111    123456777777654  3333322   3579999988 55555666666


Q ss_pred             cCCCCCeeEEEEEccCCCCceEEEEEe---cCCCcEEEEeecc
Q 013717          383 EGHTKPVKSLTAVTEEGQNGVVSVFSG---SLDGEIRAWQVSV  422 (437)
Q Consensus       383 ~~h~~~v~~l~~~~~~~~~~~~~l~s~---~~dg~i~iw~~~~  422 (437)
                      ..  ...+.+.|+|.|.     +++.+   |..|.+.++|.+.
T Consensus       491 dk--~~~N~vfwsPkG~-----fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  491 DK--KFANTVFWSPKGR-----FVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             cc--cccceEEEcCCCc-----EEEEEEecccccceEEEecch
Confidence            54  5578899999884     55554   4578999999884

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.61  E-value=0.00013  Score=68.82  Aligned_cols=278  Identities=16%  Similarity=0.138  Sum_probs=150.2

Q ss_pred             eeCCEEEEEecC-eEEEEeCCCCceeeeeccccC-CCCcccE--EEEEEeC-CeEEEEecCCeEEEEeCCCCcccccccc
Q 013717          106 VHHNFLYAASSH-EINVYDRTGTTWTSINTFNDN-DSSSGSV--KSVTFCD-GKIFTAHQDCKIRVWQLTPTKHHKLKTT  180 (437)
Q Consensus       106 ~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~-~~h~~~v--~~l~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~  180 (437)
                      +.+..++.++.+ .|.-.|..+++..=....... ......+  ..+...+ +.++.++.++.|..+|.++++.......
T Consensus        59 v~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~  138 (488)
T cd00216          59 VVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN  138 (488)
T ss_pred             EECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence            336677777777 888899988643222211100 0000111  1233444 6788899999999999999886554432


Q ss_pred             cCccccceeeecCCCCeeEEeeccceeeecCCCcEE-EEEeCCCeEEEEE---------CCCcEEEEECCCcceEEEeec
Q 013717          181 LPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT-GLAVNNGLIYSVS---------WDKSLKIWRASDLRCLESIKA  250 (437)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~  250 (437)
                      .....                         ....+. ...+....++.++         .+|.+..+|..+++.+..+..
T Consensus       139 ~~~~~-------------------------~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~  193 (488)
T cd00216         139 NDQVP-------------------------PGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT  193 (488)
T ss_pred             CCCcC-------------------------cceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence            11000                         000000 1112224455543         468899999999998887753


Q ss_pred             ccc--------------------cE-EEEEEecC-CeEEEEeCCC------------------eEEEecCCCCcccceee
Q 013717          251 HED--------------------AV-NAVAVSAG-GTVYTGSADR------------------KIRVWAKPFNEKRHALI  290 (437)
Q Consensus       251 ~~~--------------------~v-~~~~~~~~-~~l~~~~~dg------------------~v~iwd~~~~~~~~~~~  290 (437)
                      ...                    .+ ...++.+. +.++.++.++                  .|.-+|..+++..++..
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~  273 (488)
T cd00216         194 TEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ  273 (488)
T ss_pred             cCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence            211                    01 12344433 4477777665                  68888887766544321


Q ss_pred             EEe------eCccccE-EEEEEccCCC---EEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEE-
Q 013717          291 ATL------EKHKSAV-NALALSDDGT---VLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSG-  359 (437)
Q Consensus       291 ~~~------~~~~~~i-~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~-  359 (437)
                      ...      .....++ ..+. .-+|.   .+++++.+|.++.+|.++++.........       ..+..+++.++.+ 
T Consensus       274 ~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-------~~~~~~~~~vyv~~  345 (488)
T cd00216         274 TTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE-------QPMAYDPGLVYLGA  345 (488)
T ss_pred             CCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec-------cccccCCceEEEcc
Confidence            110      0011111 1111 11343   67888899999999999998766543220       1112223433332 


Q ss_pred             -----------------eCCCcEEEeeCCCCCCeeeeeeecCC--C------CCe--eEEEEEccCCCCceEEEEEecCC
Q 013717          360 -----------------SADRTVRIWQRGSDGRFGCLAVLEGH--T------KPV--KSLTAVTEEGQNGVVSVFSGSLD  412 (437)
Q Consensus       360 -----------------~~dg~i~iwd~~~~~~~~~~~~~~~h--~------~~v--~~l~~~~~~~~~~~~~l~s~~~d  412 (437)
                                       ..+|.+.-.|+.+++   .+-.....  .      .+.  ..++... +      +|+.++.|
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~---~~W~~~~~~~~~~~~~g~~~~~~~~~~~g-~------~v~~g~~d  415 (488)
T cd00216         346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK---VVWEKREGTIRDSWNIGFPHWGGSLATAG-N------LVFAGAAD  415 (488)
T ss_pred             ccccccCcccccCCCCCCCceEEEEEeCCCCc---EeeEeeCCccccccccCCcccCcceEecC-C------eEEEECCC
Confidence                             235778888888877   22222211  0      111  1122222 2      68888899


Q ss_pred             CcEEEEeeccCCCC
Q 013717          413 GEIRAWQVSVSCPN  426 (437)
Q Consensus       413 g~i~iw~~~~~~~~  426 (437)
                      |.|+.+|.++++..
T Consensus       416 G~l~ald~~tG~~l  429 (488)
T cd00216         416 GYFRAFDATTGKEL  429 (488)
T ss_pred             CeEEEEECCCCcee
Confidence            99999999888753

The alignment model contains an 8-bladed beta-propeller.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.60  E-value=0.00019  Score=58.52  Aligned_cols=108  Identities=11%  Similarity=0.066  Sum_probs=72.7

Q ss_pred             CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEE-eCCeEEEEecCCeEEEEeCCCCcccccccccCccc
Q 013717          108 HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTF-CDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVN  185 (437)
Q Consensus       108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  185 (437)
                      ..+++.|+.. .+.--|.++|+..-...+      ...|.+-+. .+|.++.|+..|.+.+.+.+++.+........   
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~il------g~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~---   93 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL------GVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE---   93 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhh------CceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehh---
Confidence            4566666666 666677777644333222      334444333 47779999999999999999997655544321   


Q ss_pred             cceeeecCCCCeeEEeeccceeeecCCCcE-EEEEeCCCeEEEEECCCcEEEEECCCcceEEEeec
Q 013717          186 DRLLRFMLPNSYVTVRRHKKKLWIEHGDAV-TGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKA  250 (437)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  250 (437)
                                                .-.+ ..++++...+..|+.|++.+..|.++..++...+.
T Consensus        94 --------------------------~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen   94 --------------------------TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             --------------------------hhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence                                      1111 12445558999999999999999999888877653

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=1.8e-05  Score=68.08  Aligned_cols=242  Identities=12%  Similarity=0.100  Sum_probs=139.1

Q ss_pred             CCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcE
Q 013717          139 DSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV  215 (437)
Q Consensus       139 ~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  215 (437)
                      ..|...|..++|+|..   +..++.+.+|+|.|+++........                              .+ ..+
T Consensus       190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~------------------------------a~-~~~  238 (463)
T KOG1645|consen  190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI------------------------------AY-NQI  238 (463)
T ss_pred             cccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee------------------------------cc-CCc
Confidence            5688899999999643   7888999999999999875433332                              23 788


Q ss_pred             EEEEeCC---CeEEEEECCCcEEEEECCCcce-EEEee--cccccEEEEEEe------cCCeEEEEeCCCeEEEecCCCC
Q 013717          216 TGLAVNN---GLIYSVSWDKSLKIWRASDLRC-LESIK--AHEDAVNAVAVS------AGGTVYTGSADRKIRVWAKPFN  283 (437)
Q Consensus       216 ~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~-~~~~~--~~~~~v~~~~~~------~~~~l~~~~~dg~v~iwd~~~~  283 (437)
                      ++++|+-   ++++.|..+|.|.|||++..+- +..+.  ....+|..++.-      +.+.++++... .+..|++...
T Consensus       239 wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt-~l~f~ei~~s  317 (463)
T KOG1645|consen  239 WSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT-VLQFYEIVFS  317 (463)
T ss_pred             eeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh-hhhhhhhhcc
Confidence            9999975   8999999999999999986532 22221  123345444433      23334444433 3567766555


Q ss_pred             cccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC-------cEEE-EECCCCccceEEeeeecc------ccc-ceEE
Q 013717          284 EKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR-------SILV-WDREDSANHMVVTGALRG------HGK-AILC  348 (437)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-------~i~i-~d~~~~~~~~~~~~~~~~------~~~-~i~~  348 (437)
                      .....++..+. ..+...++.+.+-.+.++......       .|-. -|..++...........+      +.. .+..
T Consensus       318 ~~~~p~vlele-~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~  396 (463)
T KOG1645|consen  318 AECLPCVLELE-PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRA  396 (463)
T ss_pred             ccCCCcccccC-CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceec
Confidence            44444433333 345566666666445544433320       0111 111222211111111100      111 1111


Q ss_pred             EEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717          349 LINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       349 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                      . .+.+ .+.+|...+.+.+||..+.+   .++++.- ..+|.++........   -||+.-. |..++||+-+.
T Consensus       397 ~-~~nn~iv~~gd~tn~lil~D~~s~e---vvQ~l~~-~epv~Dicp~~~n~~---syLa~LT-d~~v~Iyk~es  462 (463)
T KOG1645|consen  397 V-EDNNYIVVVGDSTNELILQDPHSFE---VVQTLAL-SEPVLDICPNDTNGS---SYLALLT-DDRVHIYKNES  462 (463)
T ss_pred             c-ccccEEEEecCCcceeEEeccchhh---eeeeccc-CcceeecceeecCCc---chhhhee-cceEEEEecCC
Confidence            1 1123 55566777899999999876   6666653 378888876654322   3666665 45888887654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=2.1e-05  Score=74.29  Aligned_cols=209  Identities=17%  Similarity=0.269  Sum_probs=130.1

Q ss_pred             cEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCc-EEEEEeCC
Q 013717          144 SVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA-VTGLAVNN  222 (437)
Q Consensus       144 ~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~  222 (437)
                      .|.|+.-+.+.++.|+.+|.|.+.+-.-. ....+.                              .+... |..+-...
T Consensus        27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~-~~~~fq------------------------------a~~~siv~~L~~~~   75 (933)
T KOG2114|consen   27 AISCCSSSTGSVVIGTADGRVVILNSSFQ-LIRGFQ------------------------------AYEQSIVQFLYILN   75 (933)
T ss_pred             ceeEEcCCCceEEEeeccccEEEecccce-eeehhe------------------------------ecchhhhhHhhccc
Confidence            56665555566999999999888774321 111111                              23333 44444433


Q ss_pred             --CeEEEEECCCc-----EEEEECCCc------ceEEE--ee-----cccccEEEEEEecCCe-EEEEeCCCeEEEecCC
Q 013717          223 --GLIYSVSWDKS-----LKIWRASDL------RCLES--IK-----AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKP  281 (437)
Q Consensus       223 --~~l~~~~~dg~-----i~iwd~~~~------~~~~~--~~-----~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~  281 (437)
                        ++|++.+.|+.     |+|||++.-      +++..  +.     ....++.+++++.+-. +|+|..+|.|..+.=+
T Consensus        76 ~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD  155 (933)
T KOG2114|consen   76 KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD  155 (933)
T ss_pred             CceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc
Confidence              57888877654     899998643      23311  11     1356788999998877 9999999999998422


Q ss_pred             CCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEE
Q 013717          282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSG  359 (437)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~  359 (437)
                      -.........-......+|+.+++..+++.++-...-..|.+|.+.... +  ....+..|+....|.++++.  .++++
T Consensus       156 i~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p--~~~~ld~~G~~lnCss~~~~t~qfIca  232 (933)
T KOG2114|consen  156 ILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-P--SLKVLDNNGISLNCSSFSDGTYQFICA  232 (933)
T ss_pred             chhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-c--ceeeeccCCccceeeecCCCCccEEEe
Confidence            1111222222333456899999999998873333334579999998433 2  22335668888889888765  35555


Q ss_pred             eCCCcEEEeeCCCCCCeeeeeeec-CCCCCee
Q 013717          360 SADRTVRIWQRGSDGRFGCLAVLE-GHTKPVK  390 (437)
Q Consensus       360 ~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~  390 (437)
                      +.. .+.+|+....+   +-..+. +|.....
T Consensus       233 ~~e-~l~fY~sd~~~---~cfaf~~g~kk~~~  260 (933)
T KOG2114|consen  233 GSE-FLYFYDSDGRG---PCFAFEVGEKKEML  260 (933)
T ss_pred             cCc-eEEEEcCCCcc---eeeeecCCCeEEEE
Confidence            544 59999988655   334444 6655443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=1.4e-05  Score=75.44  Aligned_cols=205  Identities=14%  Similarity=0.167  Sum_probs=134.1

Q ss_pred             cEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEeeccccc-EEEEEEecCCe-EEEEeCCC-----eEEEecCCCCccc
Q 013717          214 AVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDA-VNAVAVSAGGT-VYTGSADR-----KIRVWAKPFNEKR  286 (437)
Q Consensus       214 ~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~-l~~~~~dg-----~v~iwd~~~~~~~  286 (437)
                      .|.|+.-+...++.|+.+|.|.+++ +..+.++.++.+... |..+-...+.. |++.+.|+     .|++||+......
T Consensus        27 ~isc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   27 AISCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             ceeEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            6777766669999999999999988 345566777777766 54444433323 66666654     5899998644221


Q ss_pred             --ceee--EEeeC-----ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--E
Q 013717          287 --HALI--ATLEK-----HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--L  355 (437)
Q Consensus       287 --~~~~--~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~  355 (437)
                        ..++  ..+..     ...++.+++.+.+-+.+|+|-.||.|..+.-+-.+.......-...-..+|+.+.+..+  .
T Consensus       106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s  185 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS  185 (933)
T ss_pred             CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence              2233  11111     34678899999999999999999999998643211111111112234677888877643  3


Q ss_pred             -EEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCCC
Q 013717          356 -LMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSS  428 (437)
Q Consensus       356 -l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~  428 (437)
                       +++++ ...|.+|.+....  .....+..|..+++|..+++..++    ++++++  ..|.+|+.+..+++..
T Consensus       186 ~lFv~T-t~~V~~y~l~gr~--p~~~~ld~~G~~lnCss~~~~t~q----fIca~~--e~l~fY~sd~~~~cfa  250 (933)
T KOG2114|consen  186 VLFVAT-TEQVMLYSLSGRT--PSLKVLDNNGISLNCSSFSDGTYQ----FICAGS--EFLYFYDSDGRGPCFA  250 (933)
T ss_pred             eEEEEe-cceeEEEEecCCC--cceeeeccCCccceeeecCCCCcc----EEEecC--ceEEEEcCCCcceeee
Confidence             33333 4469999998433  345668888889999999987753    444443  3799999887666543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.52  E-value=0.00015  Score=65.60  Aligned_cols=250  Identities=13%  Similarity=0.148  Sum_probs=125.6

Q ss_pred             cEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeee---cCCCCeeEE----------eeccceee
Q 013717          144 SVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRF---MLPNSYVTV----------RRHKKKLW  208 (437)
Q Consensus       144 ~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----------~~~~~~~~  208 (437)
                      .|+.+.|.++.  |+.+...|.|.+|.....+........+..+.....+   ..+.....+          .......+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            57888898654  9999999999999887654332000000000000000   001111111          12223344


Q ss_pred             ecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEee--c------ccccEEEEEEe-----cCCe----EEEEe
Q 013717          209 IEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIK--A------HEDAVNAVAVS-----AGGT----VYTGS  270 (437)
Q Consensus       209 ~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~--~------~~~~v~~~~~~-----~~~~----l~~~~  270 (437)
                      ....++|++++.+. .+++.|+.+|.+.|.|++....+..-.  .      ....++++.|.     .|+.    +++|+
T Consensus        83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT  162 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT  162 (395)
T ss_dssp             ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred             eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence            55689999999998 999999999999999998887776633  1      23468888876     2442    89999


Q ss_pred             CCCeEEEecCCC-Ccccce--eeEEeeCccccEEEEE-EccC-----------------C---CEEEEEeCCCcEEEEEC
Q 013717          271 ADRKIRVWAKPF-NEKRHA--LIATLEKHKSAVNALA-LSDD-----------------G---TVLFSGACDRSILVWDR  326 (437)
Q Consensus       271 ~dg~v~iwd~~~-~~~~~~--~~~~~~~~~~~i~~~~-~~~~-----------------~---~~l~~~~~dg~i~i~d~  326 (437)
                      ..|.+.+|.+.- ....+.  .......+.++|..+. |+.+                 |   .-++....+..++++..
T Consensus       163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~  242 (395)
T PF08596_consen  163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKP  242 (395)
T ss_dssp             TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-T
T ss_pred             CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeC
Confidence            999999998752 111111  1112223556665555 3211                 1   12334445677999998


Q ss_pred             CCCccceEEeeeecc-cccceEEEE-----eeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCC----CCCeeEEEEEc
Q 013717          327 EDSANHMVVTGALRG-HGKAILCLI-----NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGH----TKPVKSLTAVT  396 (437)
Q Consensus       327 ~~~~~~~~~~~~~~~-~~~~i~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h----~~~v~~l~~~~  396 (437)
                      .+.+...+.   +.. ......++.     ..+..|++-..+|.|++|.+..-+   .+..+.-.    ...+....+++
T Consensus       243 ~~~k~~~K~---~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk---ei~~~~l~~~~d~~~~~~ssis~  316 (395)
T PF08596_consen  243 PKSKGAHKS---FDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK---EIKSVSLPPPLDSRRLSSSSISR  316 (395)
T ss_dssp             T---EEEEE----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-----EEEEEE-SS---HHHHTT-EE-T
T ss_pred             CCCccccee---eccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch---HhhcccCCCccccccccccEECC
Confidence            765533222   111 111112221     134488888999999999999865   34333322    22355566677


Q ss_pred             cCC
Q 013717          397 EEG  399 (437)
Q Consensus       397 ~~~  399 (437)
                      +++
T Consensus       317 ~Gd  319 (395)
T PF08596_consen  317 NGD  319 (395)
T ss_dssp             TS-
T ss_pred             CCC
Confidence            764

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.51  E-value=0.00019  Score=66.06  Aligned_cols=190  Identities=11%  Similarity=0.078  Sum_probs=111.1

Q ss_pred             cEEEEEeCC--C-eEEEEEC---CCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EE-EEeCC--CeEEEecCCCC
Q 013717          214 AVTGLAVNN--G-LIYSVSW---DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY-TGSAD--RKIRVWAKPFN  283 (437)
Q Consensus       214 ~v~~~~~~~--~-~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~d--g~v~iwd~~~~  283 (437)
                      .+..-.|+|  + .++..+.   +..|.++|+.+++...... ..+......|+|||+ ++ +.+.+  ..|.++|+..+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            666788888  4 3554433   3569999998887654433 555667788999997 44 44434  46777776543


Q ss_pred             cccceeeEEeeCccccEEEEEEccCCCEEEEEeC-CC--cEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEe
Q 013717          284 EKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-DR--SILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGS  360 (437)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~  360 (437)
                      .     ...+..+........|+|||+.|+..+. .+  .|+++|+.+++.....   ..+..  ...++++++.|+...
T Consensus       268 ~-----~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt---~~g~~--~~~~SPDG~~Ia~~~  337 (419)
T PRK04043        268 T-----LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV---FHGKN--NSSVSTYKNYIVYSS  337 (419)
T ss_pred             c-----EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc---cCCCc--CceECCCCCEEEEEE
Confidence            2     2223333333345679999997776653 23  6888888776532211   11211  236667777665554


Q ss_pred             CC---------CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCc--EEEEeeccC
Q 013717          361 AD---------RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGE--IRAWQVSVS  423 (437)
Q Consensus       361 ~d---------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~--i~iw~~~~~  423 (437)
                      ..         ..|.+.|+.++.    ...+... .......|+|++..    ++++....+.  +.+.+++..
T Consensus       338 ~~~~~~~~~~~~~I~v~d~~~g~----~~~LT~~-~~~~~p~~SPDG~~----I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        338 RETNNEFGKNTFNLYLISTNSDY----IRRLTAN-GVNQFPRFSSDGGS----IMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             cCCCcccCCCCcEEEEEECCCCC----eEECCCC-CCcCCeEECCCCCE----EEEEEccCCcEEEEEEecCCC
Confidence            43         367888888765    2233322 22335789999863    4455444444  445555543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.48  E-value=6e-05  Score=69.74  Aligned_cols=140  Identities=14%  Similarity=0.205  Sum_probs=92.0

Q ss_pred             eEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCccccc
Q 013717          101 IGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKL  177 (437)
Q Consensus       101 V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~  177 (437)
                      -+|++..+++++.|+.- .+.+|+..++.......    .+-.+.+..+..+++.  ++.|+..|.|.++.++.......
T Consensus        38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~----~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKN----EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             EEEeecCCceEEEecccceEEEEecCchhhhcccc----cCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence            45666669999999988 99999999875544443    2334445555566433  78888899999998876432211


Q ss_pred             ccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc----ceEEEeecc
Q 013717          178 KTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL----RCLESIKAH  251 (437)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~  251 (437)
                      ...-+                    ..    ..|...|++++|++  ..+++|...|+|..-.+...    -..+.+-..
T Consensus       114 ~~~t~--------------------~d----~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~  169 (726)
T KOG3621|consen  114 DYVTP--------------------CD----KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSE  169 (726)
T ss_pred             eeecc--------------------cc----ccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeecc
Confidence            11000                    00    13889999999998  89999999999999888762    112233345


Q ss_pred             cccEEEEEEecCCeEEEE
Q 013717          252 EDAVNAVAVSAGGTVYTG  269 (437)
Q Consensus       252 ~~~v~~~~~~~~~~l~~~  269 (437)
                      ...|..+.+. ++.++++
T Consensus       170 ds~IVQlD~~-q~~LLVS  186 (726)
T KOG3621|consen  170 DSEIVQLDYL-QSYLLVS  186 (726)
T ss_pred             CcceEEeecc-cceehHh
Confidence            5677777765 3443333

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.45  E-value=0.00098  Score=61.00  Aligned_cols=90  Identities=18%  Similarity=0.185  Sum_probs=68.1

Q ss_pred             EEEECCCcceE--EEee-cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCC
Q 013717          235 KIWRASDLRCL--ESIK-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGT  310 (437)
Q Consensus       235 ~iwd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  310 (437)
                      .+|++...+..  .... .....|.+.+++|+.. ++.|+.||.|.+||.....      ..+....-.++.++|+|+|.
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~------t~~~ka~~~P~~iaWHp~ga  312 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV------TLLAKAEFIPTLIAWHPDGA  312 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe------eeeeeecccceEEEEcCCCc
Confidence            45666544322  1111 4677899999999988 9999999999999976442      12223445678999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCc
Q 013717          311 VLFSGACDRSILVWDREDSA  330 (437)
Q Consensus       311 ~l~~~~~dg~i~i~d~~~~~  330 (437)
                      .+++|+..|.+.+||+.-..
T Consensus       313 i~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  313 IFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EEEEEcCCceEEEEEeecCc
Confidence            99999999999999987543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.34  E-value=2.4e-07  Score=87.09  Aligned_cols=197  Identities=15%  Similarity=0.134  Sum_probs=131.7

Q ss_pred             ccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEE-EeCCC-eEEE
Q 013717          203 HKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYT-GSADR-KIRV  277 (437)
Q Consensus       203 ~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~-~~~dg-~v~i  277 (437)
                      ..-+.+..|....+|++|+.  ++|+.|+..|.|++|++.+|........|...|+.+.-+.+|. +++ .+... -..+
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence            33455677889999999998  9999999999999999999999999999999999999998987 433 33333 5779


Q ss_pred             ecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--E
Q 013717          278 WAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--L  355 (437)
Q Consensus       278 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~  355 (437)
                      |++..   .....+.+.    .-.++.|+.....-+.|+......+||+.++.....+.....+....-.+..|++.  +
T Consensus      1172 W~~~s---~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1172 WDASS---TGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred             hcccc---ccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence            98753   223333443    23567888765555566666779999999886655543333332333345555554  5


Q ss_pred             EEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          356 LMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       356 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      ++   .||  .+||++..+   .+..+......+.+ .|+|.+.+     ++.-+     -|||+++-+.
T Consensus      1245 Il---ndG--vLWDvR~~~---aIh~FD~ft~~~~G-~FHP~g~e-----VIINS-----EIwD~RTF~l 1295 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPE---AIHRFDQFTDYGGG-GFHPSGNE-----VIINS-----EIWDMRTFKL 1295 (1516)
T ss_pred             Ee---eCc--eeeeeccHH---HHhhhhhheecccc-cccCCCce-----EEeec-----hhhhhHHHHH
Confidence            44   455  579998765   44444433322222 38888864     44333     3777776543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=1.7e-05  Score=68.27  Aligned_cols=117  Identities=17%  Similarity=0.174  Sum_probs=83.8

Q ss_pred             eeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCC
Q 013717          207 LWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKP  281 (437)
Q Consensus       207 ~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~  281 (437)
                      ++.+|...|.+++|+|   .++..++.+.+|+|.|+++...+..+..+ ..+++++|.-|..  +..|-..|.|.+||++
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            3456888999999999   57899999999999999999888888766 7899999998777  8888899999999998


Q ss_pred             CCcccceeeEEeeC--ccccEEEEE------EccCCCEEEEEeCCCcEEEEECCCC
Q 013717          282 FNEKRHALIATLEK--HKSAVNALA------LSDDGTVLFSGACDRSILVWDREDS  329 (437)
Q Consensus       282 ~~~~~~~~~~~~~~--~~~~i~~~~------~~~~~~~l~~~~~dg~i~i~d~~~~  329 (437)
                      ......   ..+.+  ...+|..++      ..+.|.+|+....+  +..|++...
T Consensus       267 ~~~~~~---~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s  317 (463)
T KOG1645|consen  267 QPEGPL---MELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFS  317 (463)
T ss_pred             CCCchH---hhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhcc
Confidence            654321   11111  223343333      23345566555543  566766543

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.30  E-value=2.3e-07  Score=84.04  Aligned_cols=201  Identities=14%  Similarity=0.129  Sum_probs=129.2

Q ss_pred             CCcEEEEEeCC----CeEEEEECCCcEEEEECCCcceE--EEeecccccEEEEEEecCCe--EEEEe----CCCeEEEec
Q 013717          212 GDAVTGLAVNN----GLIYSVSWDKSLKIWRASDLRCL--ESIKAHEDAVNAVAVSAGGT--VYTGS----ADRKIRVWA  279 (437)
Q Consensus       212 ~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~--l~~~~----~dg~v~iwd  279 (437)
                      ...+.|++..-    ..++.|..+|.|.+-..+...-.  ....++....++++|++-..  ||+|-    .|-.+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            34566666543    57888999999999887654332  23346788899999998644  66653    256799999


Q ss_pred             CCCCcccceeeEEeeC-ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCc-cceEEeeeecccccceEEEE-eeCCEE
Q 013717          280 KPFNEKRHALIATLEK-HKSAVNALALSDDGTVLFSGACDRSILVWDREDSA-NHMVVTGALRGHGKAILCLI-NVAGLL  356 (437)
Q Consensus       280 ~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~i~~~~-~~~~~l  356 (437)
                      +...-...+.-..+.. ......+++|..+.+++.+|.....++++|++..- ....+..  +.|.+  ..+. |.++++
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT--k~vqG--~tVdp~~~nY~  211 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT--KYVQG--ITVDPFSPNYF  211 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh--hhccc--ceecCCCCCce
Confidence            8765222121122222 33455688999899999999999999999998321 1111111  11222  1222 356787


Q ss_pred             EEEeCCCcEEEeeC-CCCCCeeeeeeecCCCC----CeeEEEEEccCCCCceEEEEEecCC-CcEEEEeeccC
Q 013717          357 MSGSADRTVRIWQR-GSDGRFGCLAVLEGHTK----PVKSLTAVTEEGQNGVVSVFSGSLD-GEIRAWQVSVS  423 (437)
Q Consensus       357 ~~~~~dg~i~iwd~-~~~~~~~~~~~~~~h~~----~v~~l~~~~~~~~~~~~~l~s~~~d-g~i~iw~~~~~  423 (437)
                      ++-. ||.|.+||. ..-+  .++..+.....    .+..++|+|....    ++++...| ++|+++++..-
T Consensus       212 cs~~-dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtg----lla~l~RdS~tIrlydi~~v  277 (783)
T KOG1008|consen  212 CSNS-DGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTG----LLAVLSRDSITIRLYDICVV  277 (783)
T ss_pred             eccc-cCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcc----hhhhhccCcceEEEeccccc
Confidence            7665 999999993 3322  23444433333    4999999998765    56666655 78999998654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.28  E-value=0.0006  Score=67.38  Aligned_cols=277  Identities=12%  Similarity=0.104  Sum_probs=141.8

Q ss_pred             cCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCC
Q 013717           98 KLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPT  172 (437)
Q Consensus        98 ~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~  172 (437)
                      .+.|.++.|.  ++.++.+..+ .|.+-|..+..+.....      -...|.+++|+++.  ++..+.++++.+-.- +-
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~------vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f  140 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN------VDNGISAASWSPDEELLALITGRQTLLFMTK-DF  140 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeee------ccCceEEEeecCCCcEEEEEeCCcEEEEEec-cc
Confidence            3689999998  5555555555 77777988866655554      46899999999887  666666677765432 11


Q ss_pred             cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeecc
Q 013717          173 KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKAH  251 (437)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  251 (437)
                      ..+..... ....                        ...+..-.+-|.. ..-+-|+ .|.....+....+........
T Consensus       141 ~~i~E~~L-~~d~------------------------~~~sk~v~VGwGrkeTqfrgs-~gr~~~~~~~~~ek~~~~~~~  194 (1265)
T KOG1920|consen  141 EPIAEKPL-DADD------------------------ERKSKFVNVGWGRKETQFRGS-EGRQAARQKIEKEKALEQIEQ  194 (1265)
T ss_pred             cchhcccc-cccc------------------------ccccccceecccccceeeecc-hhhhcccccccccccccchhh
Confidence            11111000 0000                        0011111122211 1111111 111111111100000000011


Q ss_pred             cccEEEEEEecCCe-EEEE----eCC-CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe---CCCcEE
Q 013717          252 EDAVNAVAVSAGGT-VYTG----SAD-RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA---CDRSIL  322 (437)
Q Consensus       252 ~~~v~~~~~~~~~~-l~~~----~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~  322 (437)
                      .+.=+.|.|--||. +++.    -.+ ..|++||.. +.    +-..-....+.=.+++|-|.|..+++-.   .|+.|.
T Consensus       195 ~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~----Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~Iv  269 (1265)
T KOG1920|consen  195 DDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA----LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIV  269 (1265)
T ss_pred             ccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch----hhcccCcccccccceeecCCCCeEeeeeecCCCCcEE
Confidence            22334688988997 5542    223 899999865 11    1111122233446799999999988753   366799


Q ss_pred             EEECCCCccceEEeeeecccccceEEEEeeCC--EEEE---EeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc
Q 013717          323 VWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMS---GSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE  397 (437)
Q Consensus       323 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~---~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~  397 (437)
                      +|.-+.. ....+...+......+..+.|+.+  .|++   ......|++|-+.+-. |.+...+.-.....  +.|+|.
T Consensus       270 ffErNGL-~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh-WYLKq~l~~~~~~~--~~W~p~  345 (1265)
T KOG1920|consen  270 FFERNGL-RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH-WYLKQELQFSQKAL--LMWDPV  345 (1265)
T ss_pred             EEecCCc-cccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE-EEEEEEEecccccc--ccccCC
Confidence            9985543 222233334444455788888755  6665   4444459999887643 33444444332222  667775


Q ss_pred             CCCCceEEEEEecCCCcEEEEee
Q 013717          398 EGQNGVVSVFSGSLDGEIRAWQV  420 (437)
Q Consensus       398 ~~~~~~~~l~s~~~dg~i~iw~~  420 (437)
                      ...   .+.+. ..+|...++++
T Consensus       346 ~~~---~L~v~-~~sG~~~v~~~  364 (1265)
T KOG1920|consen  346 TEK---TLHVL-RESGQRLVRDF  364 (1265)
T ss_pred             Cce---eEEEE-ecCCcEEEEEE
Confidence            543   23333 35555555443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.26  E-value=0.00089  Score=59.77  Aligned_cols=179  Identities=16%  Similarity=0.260  Sum_probs=114.1

Q ss_pred             CcEEEEECCCcceEEEee-cccccEEEEEEe---cC----Ce-EEEEeC----------CCeEEEecCCCCc---cccee
Q 013717          232 KSLKIWRASDLRCLESIK-AHEDAVNAVAVS---AG----GT-VYTGSA----------DRKIRVWAKPFNE---KRHAL  289 (437)
Q Consensus       232 g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~---~~----~~-l~~~~~----------dg~v~iwd~~~~~---~~~~~  289 (437)
                      ..|++.|..+.+.+..+. .....+.+++..   .+    .. +++|+.          .|.|.+|++....   ...+.
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            468999998888877665 234445655543   22    23 676654          2899999987631   12233


Q ss_pred             eEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEee
Q 013717          290 IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQ  369 (437)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd  369 (437)
                      +... ...++|++++-. +| +|+++. ++.|++|++...+ .......+. ....+.++...+++++.|.....+.++.
T Consensus        82 i~~~-~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~-~l~~~~~~~-~~~~i~sl~~~~~~I~vgD~~~sv~~~~  155 (321)
T PF03178_consen   82 IHST-EVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK-TLLKKAFYD-SPFYITSLSVFKNYILVGDAMKSVSLLR  155 (321)
T ss_dssp             EEEE-EESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS-SEEEEEEE--BSSSEEEEEEETTEEEEEESSSSEEEEE
T ss_pred             EEEE-eecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc-cchhhheec-ceEEEEEEeccccEEEEEEcccCEEEEE
Confidence            3333 357889998877 44 455443 5789999998766 122222222 3447889999999999999988899886


Q ss_pred             CCCCC-CeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717          370 RGSDG-RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       370 ~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                      ..... ....+.. ......++++.+.++++     .++.+..+|.|.++....
T Consensus       156 ~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~-----~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  156 YDEENNKLILVAR-DYQPRWVTAAEFLVDED-----TIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EETTTE-EEEEEE-ESS-BEEEEEEEE-SSS-----EEEEEETTSEEEEEEE-S
T ss_pred             EEccCCEEEEEEe-cCCCccEEEEEEecCCc-----EEEEEcCCCeEEEEEECC
Confidence            55422 1333332 22345688998986653     699999999999999874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.26  E-value=0.0006  Score=58.24  Aligned_cols=200  Identities=16%  Similarity=0.141  Sum_probs=121.8

Q ss_pred             EEEeCC---CeEEEEECCCc-EEEEECCCcceEEEeecccccEE--EEEEecCCe-EEEEe-----CCCeEEEecCCCCc
Q 013717          217 GLAVNN---GLIYSVSWDKS-LKIWRASDLRCLESIKAHEDAVN--AVAVSAGGT-VYTGS-----ADRKIRVWAKPFNE  284 (437)
Q Consensus       217 ~~~~~~---~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~-l~~~~-----~dg~v~iwd~~~~~  284 (437)
                      .++.+|   ..++.+-.-|+ ..+||.++++....+....+.-.  .-.|++||+ |++.-     ..|.|-|||..   
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~---   85 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA---   85 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc---
Confidence            445555   44555555544 67899999988877764333221  356999999 55532     35899999986   


Q ss_pred             ccceeeEEeeCccccEEEEEEccCCCEEEEEeC------------------CCcEEEEECCCCccceEEeeeecccccce
Q 013717          285 KRHALIATLEKHKSAVNALALSDDGTVLFSGAC------------------DRSILVWDREDSANHMVVTGALRGHGKAI  346 (437)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i  346 (437)
                      .....+.++..+.-....+.+.|||+.|+++..                  +-.+...|..+++......-...-|...+
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi  165 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI  165 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence            234567778878777888999999988877632                  22344555555543322221113356667


Q ss_pred             EEEEeeCC-EEEEEe-CCC-------cEEEeeCCCCCCeeeee----eecCCCCCeeEEEEEccCCCCceEEEEEecCCC
Q 013717          347 LCLINVAG-LLMSGS-ADR-------TVRIWQRGSDGRFGCLA----VLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDG  413 (437)
Q Consensus       347 ~~~~~~~~-~l~~~~-~dg-------~i~iwd~~~~~~~~~~~----~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  413 (437)
                      ..++.+++ .++.|. ..|       -|.+++....  ...+.    ....-.+.|-+|+++.++..    +.+|+=.-|
T Consensus       166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~----ia~tsPrGg  239 (305)
T PF07433_consen  166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRL----IAVTSPRGG  239 (305)
T ss_pred             eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCE----EEEECCCCC
Confidence            77776655 333332 222       1333333221  11111    12234567899999998763    667777889


Q ss_pred             cEEEEeeccCCC
Q 013717          414 EIRAWQVSVSCP  425 (437)
Q Consensus       414 ~i~iw~~~~~~~  425 (437)
                      .+.+||..++..
T Consensus       240 ~~~~~d~~tg~~  251 (305)
T PF07433_consen  240 RVAVWDAATGRL  251 (305)
T ss_pred             EEEEEECCCCCE
Confidence            999999988864

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.24  E-value=0.0011  Score=61.16  Aligned_cols=186  Identities=7%  Similarity=0.000  Sum_probs=103.4

Q ss_pred             cEEEEEEeCCe---EEEEec---CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEE
Q 013717          144 SVKSVTFCDGK---IFTAHQ---DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTG  217 (437)
Q Consensus       144 ~v~~l~~~~~~---l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  217 (437)
                      .+..-.|+|+.   ++..+.   +..|.++|+.+++......                               ..+....
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-------------------------------~~g~~~~  237 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-------------------------------SQGMLVV  237 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-------------------------------CCCcEEe
Confidence            67788999764   443333   3568888988775433221                               2333445


Q ss_pred             EEeCC--CeEE-EEECC--CcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEe-CCC--eEEEecCCCCcccce
Q 013717          218 LAVNN--GLIY-SVSWD--KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGS-ADR--KIRVWAKPFNEKRHA  288 (437)
Q Consensus       218 ~~~~~--~~l~-~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~-~dg--~v~iwd~~~~~~~~~  288 (437)
                      ..|+|  +.++ +.+.+  ..|.++|+.+++. ..+..+........|+|||+ |+..+ ..|  .|.+.|+..+..  +
T Consensus       238 ~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~  314 (419)
T PRK04043        238 SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--E  314 (419)
T ss_pred             eEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--E
Confidence            56777  3444 34333  5688889877764 33443333344568999998 55544 334  466666654331  1


Q ss_pred             eeEEeeCccccEEEEEEccCCCEEEEEeCC---------CcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEE
Q 013717          289 LIATLEKHKSAVNALALSDDGTVLFSGACD---------RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSG  359 (437)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~  359 (437)
                      .+ ...+.  .  ...|+|||++|+.....         ..|.+.|+.++... .+..  .+ ...-..+++++..|+..
T Consensus       315 rl-t~~g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~--~~-~~~~p~~SPDG~~I~f~  385 (419)
T PRK04043        315 QV-VFHGK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTA--NG-VNQFPRFSSDGGSIMFI  385 (419)
T ss_pred             eC-ccCCC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCC--CC-CcCCeEECCCCCEEEEE
Confidence            11 11111  1  24899999988876653         36888898776432 1211  11 12234566667655544


Q ss_pred             eCC-C--cEEEeeCCC
Q 013717          360 SAD-R--TVRIWQRGS  372 (437)
Q Consensus       360 ~~d-g--~i~iwd~~~  372 (437)
                      ..+ +  .+.+.++..
T Consensus       386 ~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        386 KYLGNQSALGIIRLNY  401 (419)
T ss_pred             EccCCcEEEEEEecCC
Confidence            432 2  355666654

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.24  E-value=0.004  Score=57.16  Aligned_cols=141  Identities=11%  Similarity=0.069  Sum_probs=85.1

Q ss_pred             EEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-
Q 013717          276 RVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-  354 (437)
Q Consensus       276 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  354 (437)
                      .+|++..+......+..+ ...+.+.+.+++|+...|+.|+.||.|.+||...+.....      ...-....++|+++ 
T Consensus       239 ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~------ka~~~P~~iaWHp~g  311 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA------KAEFIPTLIAWHPDG  311 (545)
T ss_pred             EEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee------eecccceEEEEcCCC
Confidence            356654433222222233 4678899999999999999999999999999876532211      12334456666555 


Q ss_pred             -EEEEEeCCCcEEEeeCCCCCC--------e--ee---eeeecCCCCCeeEEEEEccCCC--------CceEEEEEecCC
Q 013717          355 -LLMSGSADRTVRIWQRGSDGR--------F--GC---LAVLEGHTKPVKSLTAVTEEGQ--------NGVVSVFSGSLD  412 (437)
Q Consensus       355 -~l~~~~~dg~i~iwd~~~~~~--------~--~~---~~~~~~h~~~v~~l~~~~~~~~--------~~~~~l~s~~~d  412 (437)
                       ++++|+..|.+.+||+.-..-        .  ..   +...-.+...+..+.|.+....        .....|+-.-+.
T Consensus       312 ai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~~~~~~~~~~~~~~~L~l~f~~  391 (545)
T PF11768_consen  312 AIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQLSSQGEFYADTYDLLLLVFER  391 (545)
T ss_pred             cEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeEeccCCCccccCCCcCCccceEEEEEcC
Confidence             999999999999999754320        0  11   1112234556778888843210        011234444445


Q ss_pred             CcEEEEeeccC
Q 013717          413 GEIRAWQVSVS  423 (437)
Q Consensus       413 g~i~iw~~~~~  423 (437)
                      |=+-+-.+..|
T Consensus       392 GPl~vl~~~~G  402 (545)
T PF11768_consen  392 GPLAVLRFKLG  402 (545)
T ss_pred             CCeEEEEEeec
Confidence            55555555444

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.19  E-value=1.4e-06  Score=79.13  Aligned_cols=244  Identities=18%  Similarity=0.216  Sum_probs=147.4

Q ss_pred             CcccEEEEEEe--CCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717          141 SSGSVKSVTFC--DGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT  216 (437)
Q Consensus       141 h~~~v~~l~~~--~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  216 (437)
                      ....+.|+++.  .++  ++.|..+|.|.+-.++......                            ..+..++..+++
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs----------------------------~E~tp~~ar~Ct  106 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS----------------------------AEVTPGYARPCT  106 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCccccc----------------------------ceeccccccccc
Confidence            34556677765  333  7788889999998877543220                            112235788999


Q ss_pred             EEEeCC---CeEEEEE----CCCcEEEEECCCc--ceEEE--ee-cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCC
Q 013717          217 GLAVNN---GLIYSVS----WDKSLKIWRASDL--RCLES--IK-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFN  283 (437)
Q Consensus       217 ~~~~~~---~~l~~~~----~dg~i~iwd~~~~--~~~~~--~~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~  283 (437)
                      +++|++   +.||+|-    .|..+.|||+.++  .+...  +. +......+++|..+.+ +++|.....++++|++..
T Consensus       107 ~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs  186 (783)
T KOG1008|consen  107 SLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS  186 (783)
T ss_pred             ccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhh
Confidence            999998   6777763    4678999999876  22221  21 1334566888887777 888888889999999854


Q ss_pred             cccceeeEEeeCccccEEEEEEcc-CCCEEEEEeCCCcEEEEE-CCCCccceEE-eeeecccccceEEEEeeCC---EEE
Q 013717          284 EKRHALIATLEKHKSAVNALALSD-DGTVLFSGACDRSILVWD-REDSANHMVV-TGALRGHGKAILCLINVAG---LLM  357 (437)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~---~l~  357 (437)
                      ......+     ....+..+...| .++|+++-. ||.|.+|| .+.-+..... ..........+..+++.+.   .++
T Consensus       187 ~~~~~sv-----nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla  260 (783)
T KOG1008|consen  187 LDSVSSV-----NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLA  260 (783)
T ss_pred             hhhhhhh-----hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhh
Confidence            3222221     233566677788 677887765 99999999 4332222211 1111112234777887765   666


Q ss_pred             EEeCC-CcEEEeeCCCCCC--------eeeeee---ecC--CCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          358 SGSAD-RTVRIWQRGSDGR--------FGCLAV---LEG--HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       358 ~~~~d-g~i~iwd~~~~~~--------~~~~~~---~~~--h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      +...| ++|+++|+.....        ......   ++.  ..+.|.+..|++..+.   ...+.+-..-.+.-+++.
T Consensus       261 ~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~---er~il~~~nl~~~Df~V~  335 (783)
T KOG1008|consen  261 VLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPT---ERQILGVINLQPKDFSVH  335 (783)
T ss_pred             hhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCcc---ceeEEeeccCChhhccch
Confidence            66664 6899999754220        000111   121  2256778888876633   234445444455555544

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.16  E-value=0.00095  Score=60.52  Aligned_cols=205  Identities=17%  Similarity=0.161  Sum_probs=110.1

Q ss_pred             cEEEEEeCC--CeEEEEECCCcEEEEECCCcc-------------------------------------------eEEEe
Q 013717          214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLR-------------------------------------------CLESI  248 (437)
Q Consensus       214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-------------------------------------------~~~~~  248 (437)
                      .|+.+.+.+  ..|++|...|.|-||.....+                                           +...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            466666666  778888888888877542211                                           11122


Q ss_pred             ecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEE--eeC------ccccEEEEEEcc-----CC---CEE
Q 013717          249 KAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIAT--LEK------HKSAVNALALSD-----DG---TVL  312 (437)
Q Consensus       249 ~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~------~~~~i~~~~~~~-----~~---~~l  312 (437)
                      ....++|++++.+.-|.++.|+.+|.+.|.|++...    .+..  +..      ....++++.|.-     |+   -.+
T Consensus        83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPa----vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPA----VIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTE----EEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCe----EEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence            234689999999988889999999999999997543    2222  111      234677888863     33   378


Q ss_pred             EEEeCCCcEEEEECCC-Ccc--ceEEeeeecccccceEEEEee--------------------C---CEEEEEeCCCcEE
Q 013717          313 FSGACDRSILVWDRED-SAN--HMVVTGALRGHGKAILCLINV--------------------A---GLLMSGSADRTVR  366 (437)
Q Consensus       313 ~~~~~dg~i~i~d~~~-~~~--~~~~~~~~~~~~~~i~~~~~~--------------------~---~~l~~~~~dg~i~  366 (437)
                      ++|...|.+.+|.+-- ...  ...+......+...+..+..-                    +   .-++....+..+|
T Consensus       159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir  238 (395)
T PF08596_consen  159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR  238 (395)
T ss_dssp             EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred             EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence            8999999999998751 111  112222222344555444321                    0   1234444566799


Q ss_pred             EeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          367 IWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       367 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      ++...+.+   ...+.....-....+.+.+......+..|++-..||.|+++.+..-++
T Consensus       239 v~~~~~~k---~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke  294 (395)
T PF08596_consen  239 VFKPPKSK---GAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE  294 (395)
T ss_dssp             EE-TT------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred             EEeCCCCc---ccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence            99988766   333322222233344443211011224789999999999999876543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.15  E-value=0.0011  Score=61.04  Aligned_cols=222  Identities=15%  Similarity=0.154  Sum_probs=115.9

Q ss_pred             CcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEE
Q 013717          141 SSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA  219 (437)
Q Consensus       141 h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  219 (437)
                      .......+.++|++ +++.+.||...++.....+..                                   ..+.-..++
T Consensus        31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k-----------------------------------~~G~g~~~v   75 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNK-----------------------------------AFGSGLSFV   75 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEE-----------------------------------EEEE-SEEE
T ss_pred             CCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccc-----------------------------------ccCceeEEE
Confidence            34457889999877 666688899889884332211                                   123344566


Q ss_pred             eCC-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccc
Q 013717          220 VNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKS  298 (437)
Q Consensus       220 ~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  298 (437)
                      |.+ +.+|+-...+.|.|+.--+.+....++. ...+..|-.   |.++....++.|.+||+.+.    +.++.+...  
T Consensus        76 w~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~~i~~yDw~~~----~~i~~i~v~--  145 (443)
T PF04053_consen   76 WSSRNRYAVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG---GNLLGVKSSDFICFYDWETG----KLIRRIDVS--  145 (443)
T ss_dssp             E-TSSEEEEE-TTS-EEEEETTEE-TT------SS-EEEEE----SSSEEEEETTEEEEE-TTT------EEEEESS---
T ss_pred             EecCccEEEEECCCeEEEEEcCccccceEEcC-CcccceEEc---CcEEEEECCCCEEEEEhhHc----ceeeEEecC--
Confidence            766 7788888889999974323333223331 122333332   77444445558999988754    366666532  


Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEECCCC----------ccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEe
Q 013717          299 AVNALALSDDGTVLFSGACDRSILVWDREDS----------ANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIW  368 (437)
Q Consensus       299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iw  368 (437)
                      +|..+.|+++|.+++..+.+ .++|++....          +........   ....|.+..|.++.++-.+.. +|+.+
T Consensus       146 ~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E---~~~~IkSg~W~~d~fiYtT~~-~lkYl  220 (443)
T PF04053_consen  146 AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHE---ISERIKSGCWVEDCFIYTTSN-HLKYL  220 (443)
T ss_dssp             E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEE---E-S--SEEEEETTEEEEE-TT-EEEEE
T ss_pred             CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEE---ecceeEEEEEEcCEEEEEcCC-eEEEE
Confidence            48999999999999988755 6888776432          002222221   245677788888855555555 67763


Q ss_pred             eCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          369 QRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       369 d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                        -.++ ...+..+   ..++.=+...+..+     .++....|+.|..+.++..
T Consensus       221 --~~Ge-~~~i~~l---d~~~yllgy~~~~~-----~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  221 --VNGE-TGIIAHL---DKPLYLLGYLPKEN-----RLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             --ETTE-EEEEEE----SS--EEEEEETTTT-----EEEEE-TT--EEEEE--HH
T ss_pred             --EcCC-cceEEEc---CCceEEEEEEccCC-----EEEEEECCCCEEEEEECHH
Confidence              3222 1233333   45677777777554     5888889999999887643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.13  E-value=1.4e-06  Score=82.04  Aligned_cols=187  Identities=14%  Similarity=0.191  Sum_probs=125.3

Q ss_pred             eeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EE-EEecCC-
Q 013717           91 NSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IF-TAHQDC-  162 (437)
Q Consensus        91 ~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~-s~~~dg-  162 (437)
                      ...++ .|+...+|++|+  .++|+.|+-. .|++|++.+|....-.     ..|..+|+-+.-+-++  ++ +++... 
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-----ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-----NCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-----cccccccccccccCCcceeeeeccccCc
Confidence            34455 788999999999  7899999988 9999999997443332     5699999999988444  33 333333 


Q ss_pred             eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC-CcEEEEEeCC--CeEEEEECCCcEEEEEC
Q 013717          163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG-DAVTGLAVNN--GLIYSVSWDKSLKIWRA  239 (437)
Q Consensus       163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~~l~~~~~dg~i~iwd~  239 (437)
                      -..+|+....-  ...                                |. ..-.++.|+.  ..-+.|.......+||+
T Consensus      1168 lsaLW~~~s~~--~~~--------------------------------Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDv 1213 (1516)
T KOG1832|consen 1168 LSALWDASSTG--GPR--------------------------------HSFDEDKAVKFSNSLQFRALGTEADDALLYDV 1213 (1516)
T ss_pred             hHHHhcccccc--Ccc--------------------------------ccccccceeehhhhHHHHHhcccccceEEEec
Confidence            56789886521  111                                21 2345777877  44455666667899999


Q ss_pred             CCcceEEEee----cccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE
Q 013717          240 SDLRCLESIK----AHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG  315 (437)
Q Consensus       240 ~~~~~~~~~~----~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  315 (437)
                      +++..+.++-    +....-++..|+|+..|+.  .||  .+||++...    .++.|.... .-..-.|+|.|..++.-
T Consensus      1214 qT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndG--vLWDvR~~~----aIh~FD~ft-~~~~G~FHP~g~eVIIN 1284 (1516)
T KOG1832|consen 1214 QTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDG--VLWDVRIPE----AIHRFDQFT-DYGGGGFHPSGNEVIIN 1284 (1516)
T ss_pred             ccCcHHHHhcCcchhhhhhccccccCCCcceEe--eCc--eeeeeccHH----HHhhhhhhe-ecccccccCCCceEEee
Confidence            9998776632    2222336788999988554  355  479887543    344443322 11234589999988876


Q ss_pred             eCCCcEEEEECCCCc
Q 013717          316 ACDRSILVWDREDSA  330 (437)
Q Consensus       316 ~~dg~i~i~d~~~~~  330 (437)
                      +     -|||+++.+
T Consensus      1285 S-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1285 S-----EIWDMRTFK 1294 (1516)
T ss_pred             c-----hhhhhHHHH
Confidence            5     389998765

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.12  E-value=0.0091  Score=56.60  Aligned_cols=283  Identities=10%  Similarity=0.037  Sum_probs=146.7

Q ss_pred             cccCCCceeEEecCCCcceeeeec-Ccc-----CCe--EEEEeeC-CEEEEEecC-eEEEEeCCCCceeeeeccccCCCC
Q 013717           72 QKLSPDETINFSSASHLCINSVQL-GHK-----LPI--GCIAVHH-NFLYAASSH-EINVYDRTGTTWTSINTFNDNDSS  141 (437)
Q Consensus        72 ~s~s~dg~i~~~~~~~~~~~~~~~-~h~-----~~V--~~l~~~~-~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h  141 (437)
                      ...+.++.+...+......+-+.- ...     ..+  ..+++.+ +.++.++.+ .|.-+|.++++..=..........
T Consensus        65 y~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~  144 (488)
T cd00216          65 YFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPP  144 (488)
T ss_pred             EEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCc
Confidence            334556777777765543332222 111     011  1123334 788888888 999999998744322222100000


Q ss_pred             cccE-EEEEEeCCeEEEEe---------cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717          142 SGSV-KSVTFCDGKIFTAH---------QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH  211 (437)
Q Consensus       142 ~~~v-~~l~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (437)
                      ...+ ....+.++.++.++         .+|.+..+|..+++................. ...         ..... .+
T Consensus       145 ~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~-~~~---------~~~~~-~~  213 (488)
T cd00216         145 GYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPT-WGP---------DRQMW-GP  213 (488)
T ss_pred             ceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCC-CCC---------Cccee-cC
Confidence            0001 12233345555553         3678999999998866554432110000000 000         00000 01


Q ss_pred             C-CcEE-EEEeCC--CeEEEEECCC------------------cEEEEECCCcceEEEeecccccEE------EEEEe--
Q 013717          212 G-DAVT-GLAVNN--GLIYSVSWDK------------------SLKIWRASDLRCLESIKAHEDAVN------AVAVS--  261 (437)
Q Consensus       212 ~-~~v~-~~~~~~--~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~v~------~~~~~--  261 (437)
                      . ..+. ..++++  +.++.++.++                  .|.-+|..+++.+..++.......      ...+.  
T Consensus       214 ~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~  293 (488)
T cd00216         214 GGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADI  293 (488)
T ss_pred             CCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEec
Confidence            1 1111 233332  6677776554                  799999999999887752211111      01111  


Q ss_pred             --cCC----eEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE------------------eC
Q 013717          262 --AGG----TVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG------------------AC  317 (437)
Q Consensus       262 --~~~----~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~------------------~~  317 (437)
                        -++    .+++++.+|.+..+|.++++..++....       ...++.+|  ..++.+                  ..
T Consensus       294 ~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~  364 (488)
T cd00216         294 KPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPG  364 (488)
T ss_pred             cccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-------ccccccCC--ceEEEccccccccCcccccCCCCCCC
Confidence              123    2777888999999998877644432211       11123333  223222                  24


Q ss_pred             CCcEEEEECCCCccceEEeeeecccc----cc--eEEEEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717          318 DRSILVWDREDSANHMVVTGALRGHG----KA--ILCLINVAGLLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       318 dg~i~i~d~~~~~~~~~~~~~~~~~~----~~--i~~~~~~~~~l~~~~~dg~i~iwd~~~~~  374 (437)
                      +|.+.-+|+.+++..+........+.    ..  ...+...++.|++++.||.|+.+|.++++
T Consensus       365 ~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~  427 (488)
T cd00216         365 KGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGK  427 (488)
T ss_pred             ceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCc
Confidence            67888889988876655432200000    11  12344567789999999999999999988

The alignment model contains an 8-bladed beta-propeller.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.12  E-value=0.0059  Score=54.51  Aligned_cols=211  Identities=17%  Similarity=0.205  Sum_probs=124.9

Q ss_pred             eeEEecCCCcceeeeec--CccCCeEEEEee---------CCEEEEEec-----------CeEEEEeCCCC-----ceee
Q 013717           79 TINFSSASHLCINSVQL--GHKLPIGCIAVH---------HNFLYAASS-----------HEINVYDRTGT-----TWTS  131 (437)
Q Consensus        79 ~i~~~~~~~~~~~~~~~--~h~~~V~~l~~~---------~~~l~s~~~-----------d~v~vwd~~~~-----~~~~  131 (437)
                      .|.+.+....... ..+  .....+.+++.-         ..+++.|..           +.|.++++...     +.+.
T Consensus         3 ~i~l~d~~~~~~~-~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    3 SIRLVDPTTFEVL-DSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             EEEEEETTTSSEE-EEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             EEEEEeCCCCeEE-EEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            3455555433322 222  445555655543         257777763           36999999883     3444


Q ss_pred             eeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717          132 INTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH  211 (437)
Q Consensus       132 ~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (437)
                      +...    ...++|++|+-..+.|+.+. .+.|.+|++...+......                            ....
T Consensus        82 i~~~----~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~----------------------------~~~~  128 (321)
T PF03178_consen   82 IHST----EVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKA----------------------------FYDS  128 (321)
T ss_dssp             EEEE----EESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEE----------------------------EE-B
T ss_pred             EEEE----eecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhh----------------------------eecc
Confidence            4332    46789999999988855444 5899999998776111111                            0123


Q ss_pred             CCcEEEEEeCCCeEEEEECCCcEEEEECCC-cceEEEee--cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCc---
Q 013717          212 GDAVTGLAVNNGLIYSVSWDKSLKIWRASD-LRCLESIK--AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNE---  284 (437)
Q Consensus       212 ~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~--~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~---  284 (437)
                      ...+.++....++++.|.....+.++..+. .+.+..+.  .....++++.+-+++. ++++..+|.+.++......   
T Consensus       129 ~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~  208 (321)
T PF03178_consen  129 PFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNS  208 (321)
T ss_dssp             SSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SST
T ss_pred             eEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccc
Confidence            347888888889999999988999885543 22233332  2355688888886665 9999999999999765211   


Q ss_pred             c----cceeeEEeeCccccEEEE---EEcc--CCC------EEEEEeCCCcEEEE
Q 013717          285 K----RHALIATLEKHKSAVNAL---ALSD--DGT------VLFSGACDRSILVW  324 (437)
Q Consensus       285 ~----~~~~~~~~~~~~~~i~~~---~~~~--~~~------~l~~~~~dg~i~i~  324 (437)
                      .    .......+. ....|+++   .+.|  .+.      .++.++.+|.|.+.
T Consensus       209 ~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  209 RDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             TTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             ccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            1    122223333 34567777   5555  222      47788889988844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.11  E-value=0.0003  Score=49.88  Aligned_cols=98  Identities=20%  Similarity=0.312  Sum_probs=69.5

Q ss_pred             EEEEEeCC------CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccce
Q 013717          215 VTGLAVNN------GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHA  288 (437)
Q Consensus       215 v~~~~~~~------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  288 (437)
                      |++|++..      +.|++|+.|..|++|+-  .+.+.++. ..+.|+++.-...++++.+..+|+|-+|+-..      
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~------   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQ------   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCcc------
Confidence            45555532      89999999999999984  35677776 45678889888888899999999999996421      


Q ss_pred             eeEEeeCccccEEEEEEcc---CC-CEEEEEeCCCcEE
Q 013717          289 LIATLEKHKSAVNALALSD---DG-TVLFSGACDRSIL  322 (437)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~dg~i~  322 (437)
                      .+-..+ .+..+.++++..   || ..|++|-.+|.|-
T Consensus        73 RlWRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   73 RLWRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            122222 233466666544   23 3788898888774

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.11  E-value=0.0097  Score=56.70  Aligned_cols=196  Identities=15%  Similarity=0.115  Sum_probs=105.4

Q ss_pred             CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcc------cEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccc
Q 013717          108 HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSG------SVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTT  180 (437)
Q Consensus       108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~------~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  180 (437)
                      +..|+.++.+ .|.-.|..+++..=............      .-..+++.++.++.++.|+.|.-.|.++++.......
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~  148 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN  148 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence            6677777766 88888988864322221110000000      0122455677788889999999999999986554332


Q ss_pred             cCccccceeeecCCCCeeEEeeccceeeecCCCcEEE-EEeCCCeEEEEE------CCCcEEEEECCCcceEEEeecccc
Q 013717          181 LPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTG-LAVNNGLIYSVS------WDKSLKIWRASDLRCLESIKAHED  253 (437)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~  253 (437)
                      ....                          ....+.+ -.+..+.++.+.      .+|.|..+|.++|+.+..+..-..
T Consensus       149 ~~~~--------------------------~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~  202 (527)
T TIGR03075       149 GDYK--------------------------AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPG  202 (527)
T ss_pred             cccc--------------------------ccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCC
Confidence            1000                          0001111 111224555554      268999999999988876542111


Q ss_pred             -------------------------------cEE-EEEEecCCe-EEEEeCC-----C-----------eEEEecCCCCc
Q 013717          254 -------------------------------AVN-AVAVSAGGT-VYTGSAD-----R-----------KIRVWAKPFNE  284 (437)
Q Consensus       254 -------------------------------~v~-~~~~~~~~~-l~~~~~d-----g-----------~v~iwd~~~~~  284 (437)
                                                     .+. .+++.|+.. +..+..+     +           .|.-.|+++++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~  282 (527)
T TIGR03075       203 DMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGK  282 (527)
T ss_pred             CcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCC
Confidence                                           111 234555443 5554422     2           44555555544


Q ss_pred             ccceeeEEeeCcc-------ccEEEEEEccCCC---EEEEEeCCCcEEEEECCCCcc
Q 013717          285 KRHALIATLEKHK-------SAVNALALSDDGT---VLFSGACDRSILVWDREDSAN  331 (437)
Q Consensus       285 ~~~~~~~~~~~~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~  331 (437)
                      ..+..  ....|.       ....-+.+..+|+   .++.+..+|.+++.|.++++.
T Consensus       283 ~~W~~--Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       283 IKWHY--QTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             EEEee--eCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence            33221  111121       1222233334676   788999999999999998865

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.11  E-value=0.0041  Score=53.24  Aligned_cols=222  Identities=14%  Similarity=0.211  Sum_probs=127.4

Q ss_pred             EEEEeCCe---EEEEecCCe-EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC
Q 013717          147 SVTFCDGK---IFTAHQDCK-IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN  222 (437)
Q Consensus       147 ~l~~~~~~---l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  222 (437)
                      .++.+|..   ++.+-.-|+ ..+||..+++....+..                      ...+.|.+|.      .|++
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a----------------------~~gRHFyGHg------~fs~   60 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA----------------------PPGRHFYGHG------VFSP   60 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC----------------------CCCCEEecCE------EEcC
Confidence            44555432   555554443 56788888875554432                      2233445552      3555


Q ss_pred             --CeEEEEE-----CCCcEEEEECC-CcceEEEeecccccEEEEEEecCCe-EEEEe------------------CCCeE
Q 013717          223 --GLIYSVS-----WDKSLKIWRAS-DLRCLESIKAHEDAVNAVAVSAGGT-VYTGS------------------ADRKI  275 (437)
Q Consensus       223 --~~l~~~~-----~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~------------------~dg~v  275 (437)
                        ++|++.-     ..|.|-|||.. +.+.+.++..+.-.-..+.+.|||+ |+++-                  ++..+
T Consensus        61 dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL  140 (305)
T PF07433_consen   61 DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSL  140 (305)
T ss_pred             CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCce
Confidence              6666653     35889999998 6778888887766677788999995 55542                  12233


Q ss_pred             EEecCCCCcccceeeEE--e--eCccccEEEEEEccCCCEEEEEeCCCc-------EEEEECCCCccceEEee---eecc
Q 013717          276 RVWAKPFNEKRHALIAT--L--EKHKSAVNALALSDDGTVLFSGACDRS-------ILVWDREDSANHMVVTG---ALRG  341 (437)
Q Consensus       276 ~iwd~~~~~~~~~~~~~--~--~~~~~~i~~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~---~~~~  341 (437)
                      .+.|..++    +++..  +  ..|...|..+++.++|..++..-..|.       |.+++...  ....+..   ....
T Consensus       141 ~~ld~~sG----~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~  214 (305)
T PF07433_consen  141 VYLDARSG----ALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRR  214 (305)
T ss_pred             EEEecCCC----ceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHh
Confidence            33333222    23333  3  336778999999999877666544432       33333221  1111110   0122


Q ss_pred             cccceEEEEeeCC--EE-EEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCc
Q 013717          342 HGKAILCLINVAG--LL-MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGE  414 (437)
Q Consensus       342 ~~~~i~~~~~~~~--~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  414 (437)
                      -...+-+++++.+  ++ +++-..|.+.+||..++.   .+....  -..+..++..+++      +++|.+. |.
T Consensus       215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~---~~~~~~--l~D~cGva~~~~~------f~~ssG~-G~  278 (305)
T PF07433_consen  215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR---LLGSVP--LPDACGVAPTDDG------FLVSSGQ-GQ  278 (305)
T ss_pred             hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC---Eeeccc--cCceeeeeecCCc------eEEeCCC-cc
Confidence            3345667777654  44 556667899999999877   443332  2245566666554      6766665 44

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.09  E-value=0.0057  Score=53.31  Aligned_cols=226  Identities=12%  Similarity=0.131  Sum_probs=127.2

Q ss_pred             eCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEE
Q 013717          151 CDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSV  228 (437)
Q Consensus       151 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~  228 (437)
                      .++.|+.|+.+| +.+++..........                               .+...|..+..-+  +.+++-
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i-------------------------------~~~~~I~ql~vl~~~~~llvL   53 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRI-------------------------------LKLSSITQLSVLPELNLLLVL   53 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeE-------------------------------eecceEEEEEEecccCEEEEE
Confidence            355688998888 889998322211111                               1333488888877  555555


Q ss_pred             ECCCcEEEEECCCcceEEEe--------------ecccccEEEEE--EecCCe-EEEEeCCCeEEEecCCCCcccc-eee
Q 013717          229 SWDKSLKIWRASDLRCLESI--------------KAHEDAVNAVA--VSAGGT-VYTGSADRKIRVWAKPFNEKRH-ALI  290 (437)
Q Consensus       229 ~~dg~i~iwd~~~~~~~~~~--------------~~~~~~v~~~~--~~~~~~-l~~~~~dg~v~iwd~~~~~~~~-~~~  290 (437)
                      + |+.++++++.........              ......+...+  -...+. .++......|.+|......... ...
T Consensus        54 s-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~  132 (275)
T PF00780_consen   54 S-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLL  132 (275)
T ss_pred             c-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccccee
Confidence            4 599999998765544311              11233455555  112333 5555556699999876543333 455


Q ss_pred             EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeee--------cccccceEEEEeeCC-EEEEEeC
Q 013717          291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGAL--------RGHGKAILCLINVAG-LLMSGSA  361 (437)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~~i~~~~~~~~-~l~~~~~  361 (437)
                      +.+. ....+..++|.  ++.++.|..++ ..+.|+.++.....+....        .....++..+....+ +|++-  
T Consensus       133 ke~~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--  206 (275)
T PF00780_consen  133 KEIS-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--  206 (275)
T ss_pred             EEEE-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--
Confidence            5554 44788999998  55788887555 8888998664332221100        011223444444433 55432  


Q ss_pred             CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCC
Q 013717          362 DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPN  426 (437)
Q Consensus       362 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  426 (437)
                      |..-.+.|.. |+... ...+.- ......+++...       ||+..+.+ .|.||++.+++..
T Consensus       207 ~~~g~fv~~~-G~~~r-~~~i~W-~~~p~~~~~~~p-------yli~~~~~-~iEV~~~~~~~lv  260 (275)
T PF00780_consen  207 DNIGVFVNKN-GEPSR-KSTIQW-SSAPQSVAYSSP-------YLIAFSSN-SIEVRSLETGELV  260 (275)
T ss_pred             cceEEEEcCC-CCcCc-ccEEEc-CCchhEEEEECC-------EEEEECCC-EEEEEECcCCcEE
Confidence            3333333443 33211 122222 225556666543       67777765 5999999998653

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.08  E-value=0.00064  Score=67.16  Aligned_cols=202  Identities=12%  Similarity=0.120  Sum_probs=124.2

Q ss_pred             CCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcc---
Q 013717          212 GDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEK---  285 (437)
Q Consensus       212 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~---  285 (437)
                      ...|.++.|..  +.++.+..+|.|.+-|.++.... ....-...|.+++|+||+. ++..+..+++.+-+-....-   
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence            36888998876  88888999999999998776432 2233567899999999999 77777777776543210000   


Q ss_pred             --------cc--------eeeEEeeCc---------------------cccEEEEEEccCCCEEEEE-----eCCCcEEE
Q 013717          286 --------RH--------ALIATLEKH---------------------KSAVNALALSDDGTVLFSG-----ACDRSILV  323 (437)
Q Consensus       286 --------~~--------~~~~~~~~~---------------------~~~i~~~~~~~~~~~l~~~-----~~dg~i~i  323 (437)
                              ..        +....+++.                     .+.=+.|.|--||+++++.     ..-..|+|
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV  226 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV  226 (1265)
T ss_pred             ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence                    00        000011111                     1112458999999999983     22379999


Q ss_pred             EECCCCccceEEeeeecccccceEEEEeeCCEEEEEe---CCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCC
Q 013717          324 WDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGS---ADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ  400 (437)
Q Consensus       324 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  400 (437)
                      ||-+ +...  .............++.++|.++++-.   .|+.|.+|.-+.-......-.+.....+|..++|..+++ 
T Consensus       227 ~drE-g~Ln--s~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd-  302 (1265)
T KOG1920|consen  227 YDRE-GALN--STSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD-  302 (1265)
T ss_pred             eccc-chhh--cccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC-
Confidence            9976 3211  11111112334455666666777653   466799998665332223333333445599999999885 


Q ss_pred             CceEEEEE---ecCCCcEEEEeecc
Q 013717          401 NGVVSVFS---GSLDGEIRAWQVSV  422 (437)
Q Consensus       401 ~~~~~l~s---~~~dg~i~iw~~~~  422 (437)
                          .|+.   ......|++|-+..
T Consensus       303 ----iLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  303 ----ILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             ----ceeeeecccccceEEEEEecC
Confidence                4555   44455599997654

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.05  E-value=4.9e-05  Score=70.28  Aligned_cols=150  Identities=16%  Similarity=0.183  Sum_probs=101.2

Q ss_pred             cEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEee-cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCccccee-e
Q 013717          214 AVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHAL-I  290 (437)
Q Consensus       214 ~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~-~  290 (437)
                      ..+|++...++++.|+.-|.+++|+-..++....-. +..+.+....++++.. +|.|+..|.|.++-+......... +
T Consensus        37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~  116 (726)
T KOG3621|consen   37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYV  116 (726)
T ss_pred             EEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceee
Confidence            345666666999999999999999976665433222 2344556666788777 888999999999987643222111 1


Q ss_pred             EEe-eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCC
Q 013717          291 ATL-EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADR  363 (437)
Q Consensus       291 ~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg  363 (437)
                      ... +.|...|++++|++++..+++|...|+|..-.+..........+.+......|..++....+|++++--.
T Consensus       117 t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r  190 (726)
T KOG3621|consen  117 TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTR  190 (726)
T ss_pred             ccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhh
Confidence            112 2267899999999999999999999999998887621111112223334667788887777666555443

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.93  E-value=0.0047  Score=58.14  Aligned_cols=110  Identities=15%  Similarity=0.113  Sum_probs=67.5

Q ss_pred             ecCCeEEEEeCCCeEEEecCCCCcc-cceeeEEeeCccccEEEEEEccCCCEEEEEeC-CCcEEEEECCCCccce-----
Q 013717          261 SAGGTVYTGSADRKIRVWAKPFNEK-RHALIATLEKHKSAVNALALSDDGTVLFSGAC-DRSILVWDREDSANHM-----  333 (437)
Q Consensus       261 ~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~-----  333 (437)
                      .++|+.+.. .++.|.+.|.+.... ....+..+. -......++++|||+++++++. +.+|.|+|+.+.+..+     
T Consensus       285 vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~  362 (635)
T PRK02888        285 VKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK  362 (635)
T ss_pred             hhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence            346662222 367899999765111 112333333 4567789999999998877655 8999999998744211     


Q ss_pred             ---EEeeee-cccccceEEEEeeCCEEEEEeCCCcEEEeeCCC
Q 013717          334 ---VVTGAL-RGHGKAILCLINVAGLLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       334 ---~~~~~~-~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~  372 (437)
                         .+.... .+....-+.+...++...+-..|..|..|++..
T Consensus       363 ~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        363 PRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence               111111 122222344444455777778899999999875

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.92  E-value=0.012  Score=54.10  Aligned_cols=196  Identities=12%  Similarity=0.073  Sum_probs=98.1

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCC
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNS  196 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (437)
                      .|+||+..+..... ..+   . + +.|.++.|..+. |+....||.++++|+.... ...+.. ...            
T Consensus        62 ~I~iys~sG~ll~~-i~w---~-~-~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~-~i~------------  121 (410)
T PF04841_consen   62 SIQIYSSSGKLLSS-IPW---D-S-GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGE-EIE------------  121 (410)
T ss_pred             EEEEECCCCCEeEE-EEE---C-C-CCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhh-hcc------------
Confidence            49999988753322 222   2 2 899999998655 9999999999999987433 000000 000            


Q ss_pred             eeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcc-eEEEee---c-----c-cccEEE-EEEecCCe
Q 013717          197 YVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLR-CLESIK---A-----H-EDAVNA-VAVSAGGT  265 (437)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~---~-----~-~~~v~~-~~~~~~~~  265 (437)
                                ...-....+....+...-++.-..++.+.+.+--... ....+.   .     + ...... ..++.+..
T Consensus       122 ----------~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~  191 (410)
T PF04841_consen  122 ----------EEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV  191 (410)
T ss_pred             ----------ccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcc
Confidence                      0000111222223332223333344444443322211 111110   0     0 000111 12333333


Q ss_pred             -EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccccc
Q 013717          266 -VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGK  344 (437)
Q Consensus       266 -l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  344 (437)
                       .+....++.+.+.+-..-       ..+ ...+++..|+.||+|+++|.-..+|.+.+.+..-.+....+.  . ....
T Consensus       192 ~~i~~~~g~~i~~i~~~~~-------~~i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~--~-~~~~  260 (410)
T PF04841_consen  192 VEILLANGETIYIIDENSF-------KQI-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD--T-DSKS  260 (410)
T ss_pred             eEEEEecCCEEEEEEcccc-------ccc-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee--c-CcCC
Confidence             444444555554432110       011 134689999999999999999999999998865443222221  1 1233


Q ss_pred             ceEEEEeeCC
Q 013717          345 AILCLINVAG  354 (437)
Q Consensus       345 ~i~~~~~~~~  354 (437)
                      ....+.|.|+
T Consensus       261 ~p~~~~WCG~  270 (410)
T PF04841_consen  261 PPKQMAWCGN  270 (410)
T ss_pred             CCcEEEEECC
Confidence            4566777766

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.89  E-value=0.0044  Score=60.53  Aligned_cols=99  Identities=15%  Similarity=0.194  Sum_probs=73.7

Q ss_pred             CeEEEEECCCcEEEEECCCcc--eEEE-e--ecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCcc
Q 013717          223 GLIYSVSWDKSLKIWRASDLR--CLES-I--KAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHK  297 (437)
Q Consensus       223 ~~l~~~~~dg~i~iwd~~~~~--~~~~-~--~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  297 (437)
                      ...+.|-.++.+..||.+-..  ++.. .  .......+|++-..+|.||+|+.+|.||+||-. +.   .....+.+..
T Consensus       543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~---~AKT~lp~lG  618 (794)
T PF08553_consen  543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GK---RAKTALPGLG  618 (794)
T ss_pred             CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-ch---hhhhcCCCCC
Confidence            556778888999999987532  2211 1  134567889999999999999999999999842 22   2333455678


Q ss_pred             ccEEEEEEccCCCEEEEEeCCCcEEEEEC
Q 013717          298 SAVNALALSDDGTVLFSGACDRSILVWDR  326 (437)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (437)
                      .+|..|..+.||++|++.+ +..+.+++.
T Consensus       619 ~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  619 DPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             CCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            9999999999999998765 556777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.88  E-value=0.0026  Score=45.19  Aligned_cols=104  Identities=25%  Similarity=0.412  Sum_probs=69.4

Q ss_pred             EEEEEEcc---CC-CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC-CEEEEEeCCCcEEEeeCCCCC
Q 013717          300 VNALALSD---DG-TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA-GLLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       300 i~~~~~~~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~i~iwd~~~~~  374 (437)
                      |++|++..   || +.|++|+.|..|++|+-..      +..... ....+.++...+ ..++.+-.+|+|-+|+-..  
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e------~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~--   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE------IVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQ--   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc------EEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCcc--
Confidence            45666554   33 5899999999999998642      222222 245566666554 5999999999999998654  


Q ss_pred             CeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEE
Q 013717          375 RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRA  417 (437)
Q Consensus       375 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  417 (437)
                         .+...+. +..++++++..... .+..-|++|-.+|.|-+
T Consensus        73 ---RlWRiKS-K~~~~~~~~~D~~g-dG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   73 ---RLWRIKS-KNQVTSMAFYDING-DGVPELIVGWSNGKVEV  110 (111)
T ss_pred             ---eeeeecc-CCCeEEEEEEcCCC-CCceEEEEEecCCeEEe
Confidence               3344443 33477777765442 23356999999998753

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.87  E-value=0.012  Score=49.56  Aligned_cols=201  Identities=12%  Similarity=0.100  Sum_probs=109.5

Q ss_pred             ecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecc-cccEEEEEEecCCeEEEEe-CCCeEEEecCCCC
Q 013717          209 IEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAH-EDAVNAVAVSAGGTVYTGS-ADRKIRVWAKPFN  283 (437)
Q Consensus       209 ~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~~~~-~dg~v~iwd~~~~  283 (437)
                      .+-...+.+++|+|   .++++....+.|..++. +|+.+..+.-. .+..-.|++..++.++... .++.+.++++...
T Consensus        18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~   96 (248)
T PF06977_consen   18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDD   96 (248)
T ss_dssp             TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE---
T ss_pred             CCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecc
Confidence            34556799999998   46666677888888886 57888887632 3568889998888855555 4899999988443


Q ss_pred             cccc--eeeEEee-----CccccEEEEEEccCCCEEEEEeCCCcEEEEECCC--CccceEEeee--e---cccccceEEE
Q 013717          284 EKRH--ALIATLE-----KHKSAVNALALSDDGTVLFSGACDRSILVWDRED--SANHMVVTGA--L---RGHGKAILCL  349 (437)
Q Consensus       284 ~~~~--~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~--~---~~~~~~i~~~  349 (437)
                      ....  .....+.     .++..+-.++|+|.++.|+++-+..-..+|.+..  ..........  +   ......+.++
T Consensus        97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l  176 (248)
T PF06977_consen   97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGL  176 (248)
T ss_dssp             -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EE
T ss_pred             ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccce
Confidence            3211  1111121     2456689999999888888887777777777654  1111111110  1   1123345677


Q ss_pred             EeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeecC-C------CCCeeEEEEEccCCCCceEEEEEecCCCcEEEE
Q 013717          350 INVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLEG-H------TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAW  418 (437)
Q Consensus       350 ~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-h------~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  418 (437)
                      .+++.   +++.......|..+|.. ++. .....+.. .      -..--.|+|.+++.      |...++-+..+++
T Consensus       177 ~~~p~t~~lliLS~es~~l~~~d~~-G~~-~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~------LYIvsEpNlfy~f  247 (248)
T PF06977_consen  177 SYDPRTGHLLILSDESRLLLELDRQ-GRV-VSSLSLDRGFHGLSKDIPQPEGIAFDPDGN------LYIVSEPNLFYRF  247 (248)
T ss_dssp             EEETTTTEEEEEETTTTEEEEE-TT---E-EEEEE-STTGGG-SS---SEEEEEE-TT--------EEEEETTTEEEEE
T ss_pred             EEcCCCCeEEEEECCCCeEEEECCC-CCE-EEEEEeCCcccCcccccCCccEEEECCCCC------EEEEcCCceEEEe
Confidence            77765   77777888889999844 441 22223332 1      12467899999873      5555555544443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PHA02713 hypothetical protein; Provisional

Probab=97.85  E-value=0.0043  Score=59.63  Aligned_cols=217  Identities=8%  Similarity=0.054  Sum_probs=114.3

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecC------CeEEEEeCCCCcccccccccCccccceee
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQD------CKIRVWQLTPTKHHKLKTTLPTVNDRLLR  190 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~  190 (437)
                      .+..||..+++|..+..+..    ...-.+++..++. ++.||.+      ..+..||..+.... ....++        
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~----~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~--------  339 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPN----HIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMI--------  339 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCc----cccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCc--------
Confidence            57889999988887766532    1111234445666 6666643      34667777665421 111111        


Q ss_pred             ecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCC-----cEEEEECCCcceEE--EeecccccEEEEEEecC
Q 013717          191 FMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDK-----SLKIWRASDLRCLE--SIKAHEDAVNAVAVSAG  263 (437)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~  263 (437)
                                         ..........+.+...+.||.++     .+..||..+.+-..  .+.........++  -+
T Consensus       340 -------------------~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~  398 (557)
T PHA02713        340 -------------------KNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LD  398 (557)
T ss_pred             -------------------chhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--EC
Confidence                               01112233444556667777654     47889987653222  2211111111222  26


Q ss_pred             Ce-EEEEeCCC-----------------------eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC-
Q 013717          264 GT-VYTGSADR-----------------------KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD-  318 (437)
Q Consensus       264 ~~-l~~~~~dg-----------------------~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-  318 (437)
                      ++ .+.|+.++                       .+..||..++  .+..+..+....... +++ .-+|+..+.|+.+ 
T Consensus       399 g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td--~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~  474 (557)
T PHA02713        399 QYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN--IWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKD  474 (557)
T ss_pred             CEEEEEeCCCcccccccccccccccccccccccceEEEECCCCC--eEeecCCCCcccccC-cEE-EECCEEEEEeCCCC
Confidence            77 66676542                       4667876543  233333222111111 122 2246666777654 


Q ss_pred             -----CcEEEEECCC-CccceEEeeeecccccceEEEEeeCCEEEEEeCCC--cEEEeeCCCCC
Q 013717          319 -----RSILVWDRED-SANHMVVTGALRGHGKAILCLINVAGLLMSGSADR--TVRIWQRGSDG  374 (437)
Q Consensus       319 -----g~i~i~d~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg--~i~iwd~~~~~  374 (437)
                           ..+..||..+ .+  +.....+.............+.+.++|+.+|  .+..||..+.+
T Consensus       475 ~~~~~~~ve~Ydp~~~~~--W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        475 EKNVKTCIFRYNTNTYNG--WELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             CCccceeEEEecCCCCCC--eeEccccCcccccceeEEECCEEEEEeeecceeehhhcCccccc
Confidence                 2467888876 33  3333334333444445556677888999888  77888888755

>PHA02713 hypothetical protein; Provisional

Probab=97.80  E-value=0.0038  Score=59.97  Aligned_cols=190  Identities=8%  Similarity=0.096  Sum_probs=99.8

Q ss_pred             eCCCeEEEEECC------CcEEEEECCCcceEE--EeecccccEEEEEEecCCe-EEEEeCCC-----eEEEecCCCCcc
Q 013717          220 VNNGLIYSVSWD------KSLKIWRASDLRCLE--SIKAHEDAVNAVAVSAGGT-VYTGSADR-----KIRVWAKPFNEK  285 (437)
Q Consensus       220 ~~~~~l~~~~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~-l~~~~~dg-----~v~iwd~~~~~~  285 (437)
                      .....++.||.+      ..+..||..+.+-..  .+....... +++ .-+|+ .+.|+.++     .+..||..++  
T Consensus       302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~--  377 (557)
T PHA02713        302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDD--  377 (557)
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCC--
Confidence            444666667653      347788887664321  111111111 222 23667 67777654     4778887643  


Q ss_pred             cceeeEEeeCccccEEEEEEccCCCEEEEEeCCC-----------------------cEEEEECCCCccceEEeeeeccc
Q 013717          286 RHALIATLEKHKSAVNALALSDDGTVLFSGACDR-----------------------SILVWDREDSANHMVVTGALRGH  342 (437)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~~~~~~~~~~~  342 (437)
                      .+..+..+.........+.+  +|+..+.|+.++                       .+..||..+.+  +.........
T Consensus       378 ~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~--W~~v~~m~~~  453 (557)
T PHA02713        378 KWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI--WETLPNFWTG  453 (557)
T ss_pred             eEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe--EeecCCCCcc
Confidence            33333322222222222222  577777777542                       47778887643  2222222111


Q ss_pred             ccceEEEEeeCCEEEEEeCCC------cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCC--c
Q 013717          343 GKAILCLINVAGLLMSGSADR------TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDG--E  414 (437)
Q Consensus       343 ~~~i~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg--~  414 (437)
                      ..........+.+.+.|+.++      .+..||..+.+.|..+..+.........++. . +     ++.+.||.||  .
T Consensus       454 r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~-~-~-----~iyv~Gg~~~~~~  526 (557)
T PHA02713        454 TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH-D-N-----TIMMLHCYESYML  526 (557)
T ss_pred             cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE-C-C-----EEEEEeeecceee
Confidence            222223445566666676542      4678998873347666666554443333333 2 2     4888999888  6


Q ss_pred             EEEEeeccCC
Q 013717          415 IRAWQVSVSC  424 (437)
Q Consensus       415 i~iw~~~~~~  424 (437)
                      +-.||+.+.+
T Consensus       527 ~e~yd~~~~~  536 (557)
T PHA02713        527 QDTFNVYTYE  536 (557)
T ss_pred             hhhcCccccc
Confidence            7777776654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.79  E-value=0.0097  Score=57.13  Aligned_cols=218  Identities=15%  Similarity=0.254  Sum_probs=125.0

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecC------CeEEEEeCCCCcccccccccCccccceee
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQD------CKIRVWQLTPTKHHKLKTTLPTVNDRLLR  190 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~  190 (437)
                      .+..||..++.|.....+.    ....-.+++..++. .++||.|      .++..||..+.+-.. ...+.        
T Consensus       302 ~ve~yd~~~~~w~~~a~m~----~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~--------  368 (571)
T KOG4441|consen  302 SVECYDPKTNEWSSLAPMP----SPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMN--------  368 (571)
T ss_pred             eeEEecCCcCcEeecCCCC----cccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec-cCCcc--------
Confidence            7889999998888887763    44456677777777 7888888      356778877766322 22221        


Q ss_pred             ecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCc-----EEEEECCCcceEEEeecccccEEEEE-EecCC
Q 013717          191 FMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKS-----LKIWRASDLRCLESIKAHEDAVNAVA-VSAGG  264 (437)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~v~~~~-~~~~~  264 (437)
                                         ..........+.....++|+.||.     +-.||..+.+-...-.-.. .....+ ..-+|
T Consensus       369 -------------------~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g  428 (571)
T KOG4441|consen  369 -------------------TKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGG  428 (571)
T ss_pred             -------------------CccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECC
Confidence                               122223333445577888888865     6677776654322111111 111111 22367


Q ss_pred             e-EEEEeCC------CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCc-----EEEEECCCCccc
Q 013717          265 T-VYTGSAD------RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRS-----ILVWDREDSANH  332 (437)
Q Consensus       265 ~-l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~  332 (437)
                      + .++|+.+      ..+..||..++.  +..+..+........ ++.- ++.+.+.|+.|+.     |..||..+.+  
T Consensus       429 ~iYi~GG~~~~~~~l~sve~YDP~t~~--W~~~~~M~~~R~~~g-~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~--  502 (571)
T KOG4441|consen  429 KLYIIGGGDGSSNCLNSVECYDPETNT--WTLIAPMNTRRSGFG-VAVL-NGKIYVVGGFDGTSALSSVERYDPETNQ--  502 (571)
T ss_pred             EEEEEcCcCCCccccceEEEEcCCCCc--eeecCCcccccccce-EEEE-CCEEEEECCccCCCccceEEEEcCCCCc--
Confidence            7 7777754      356778775443  333333332222222 2222 5778888887763     7778887644  


Q ss_pred             eEEeeeecccccceEEEEeeCCEEEEEeCCC-----cEEEeeCCCCC
Q 013717          333 MVVTGALRGHGKAILCLINVAGLLMSGSADR-----TVRIWQRGSDG  374 (437)
Q Consensus       333 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~  374 (437)
                      +............+-.....+...++|+.||     +|..||..+++
T Consensus       503 W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  503 WTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             eeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence            3333333334444445556666888888887     46777766654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.79  E-value=0.0015  Score=62.23  Aligned_cols=68  Identities=12%  Similarity=0.116  Sum_probs=57.6

Q ss_pred             cEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCC
Q 013717          214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKP  281 (437)
Q Consensus       214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~  281 (437)
                      .+++++|+|  -.|+.|-.-|.+.+|...+.+.-.....|..+|..+.|+++|. ++++..-|.|.+|...
T Consensus        61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            356799999  5667777889999999887766555568999999999999999 9999999999999764

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.77  E-value=0.022  Score=49.78  Aligned_cols=205  Identities=13%  Similarity=0.090  Sum_probs=109.4

Q ss_pred             EEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe-CCeEEEEecCCeEEEEeCCCCcccccccccCccccc
Q 013717          110 FLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC-DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDR  187 (437)
Q Consensus       110 ~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  187 (437)
                      ++++--.+ .|.-|+..+++.+...       +...+.++... .++++.++..| +.+++.+++.....+......   
T Consensus        39 L~w~DI~~~~i~r~~~~~g~~~~~~-------~p~~~~~~~~~d~~g~Lv~~~~g-~~~~~~~~~~~~t~~~~~~~~---  107 (307)
T COG3386          39 LLWVDILGGRIHRLDPETGKKRVFP-------SPGGFSSGALIDAGGRLIACEHG-VRLLDPDTGGKITLLAEPEDG---  107 (307)
T ss_pred             EEEEeCCCCeEEEecCCcCceEEEE-------CCCCcccceeecCCCeEEEEccc-cEEEeccCCceeEEeccccCC---
Confidence            44455555 8888888765333222       33444555544 44444444444 566777655442222211100   


Q ss_pred             eeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECC------------CcEEEEECCCcceEEEeeccccc
Q 013717          188 LLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWD------------KSLKIWRASDLRCLESIKAHEDA  254 (437)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~  254 (437)
                                            ......+.+.+.+ ..+..+...            |.|+.+|. .+..+..+..+-..
T Consensus       108 ----------------------~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~  164 (307)
T COG3386         108 ----------------------LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTI  164 (307)
T ss_pred             ----------------------CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEe
Confidence                                  0112334444444 333333322            33444443 45555555555556


Q ss_pred             EEEEEEecCCe-E-EEEeCCCeEEEecCCC-Ccc-cc-eeeEEeeCccccEEEEEEccCCCEEEEEeCCC-cEEEEECCC
Q 013717          255 VNAVAVSAGGT-V-YTGSADRKIRVWAKPF-NEK-RH-ALIATLEKHKSAVNALALSDDGTVLFSGACDR-SILVWDRED  328 (437)
Q Consensus       255 v~~~~~~~~~~-l-~~~~~dg~v~iwd~~~-~~~-~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~  328 (437)
                      -+.|+|+||++ + ++=+..+.|.-|++.. ... .. .....+....+..-.++...+|++.+++..+| .|.+|+.. 
T Consensus       165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-  243 (307)
T COG3386         165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-  243 (307)
T ss_pred             cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-
Confidence            78899999997 4 4445568888887752 111 11 11222333456667788888898776555554 89999987 


Q ss_pred             CccceEEeeeecccccceEEEEeeC
Q 013717          329 SANHMVVTGALRGHGKAILCLINVA  353 (437)
Q Consensus       329 ~~~~~~~~~~~~~~~~~i~~~~~~~  353 (437)
                      ++..    ..+.-....+.+++|-+
T Consensus       244 G~l~----~~i~lP~~~~t~~~FgG  264 (307)
T COG3386         244 GKLL----GEIKLPVKRPTNPAFGG  264 (307)
T ss_pred             CcEE----EEEECCCCCCccceEeC
Confidence            5432    22333335666777765

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.71  E-value=0.028  Score=48.97  Aligned_cols=272  Identities=11%  Similarity=0.148  Sum_probs=139.9

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEE----------ecCCeEEEEeCCCCcccccccccCccc
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTA----------HQDCKIRVWQLTPTKHHKLKTTLPTVN  185 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~  185 (437)
                      .+.|+|.++++.  +..+     ..+-.-.+..++++  ++++          -....|.+||..+-.....+...+...
T Consensus        18 rv~viD~d~~k~--lGmi-----~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R   90 (342)
T PF06433_consen   18 RVYVIDADSGKL--LGMI-----DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR   90 (342)
T ss_dssp             EEEEEETTTTEE--EEEE-----EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B
T ss_pred             eEEEEECCCCcE--EEEe-----ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch
Confidence            688888888543  3332     22333345566554  4443          234569999998875444333211000


Q ss_pred             cceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEE--ECCCcEEEEECCCcceEEEeecccccEEEEEEecC
Q 013717          186 DRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSV--SWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAG  263 (437)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  263 (437)
                                           ...........+.-+.++++..  +--..|.|.|+..++.+.++.. . .+..+--.++
T Consensus        91 ---------------------~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-P-GC~~iyP~~~  147 (342)
T PF06433_consen   91 ---------------------AQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-P-GCWLIYPSGN  147 (342)
T ss_dssp             -----------------------BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-T-SEEEEEEEET
T ss_pred             ---------------------heecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-C-CEEEEEecCC
Confidence                                 0000111112222222333333  2345678888888888877752 2 2333322333


Q ss_pred             CeEEEEeCCCeEEEecCCCCccccee-eEEeeCccccEE-EEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeec-
Q 013717          264 GTVYTGSADRKIRVWAKPFNEKRHAL-IATLEKHKSAVN-ALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALR-  340 (437)
Q Consensus       264 ~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-  340 (437)
                      ..+.+-+.||.+.-..+....+.... ...|.....++. .-++...+..++--+.+|.|+-.|+............+. 
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t  227 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT  227 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence            34889999999999888744432211 122222223322 334444555555577899999999887643322221111 


Q ss_pred             ---------ccccceEEEEeeCCEEEEEe---CCC-------cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCC
Q 013717          341 ---------GHGKAILCLINVAGLLMSGS---ADR-------TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQN  401 (437)
Q Consensus       341 ---------~~~~~i~~~~~~~~~l~~~~---~dg-------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  401 (437)
                               .-.-.+.++....+.|++..   .+|       .|-+||+.+++   .+.++.. ..++.+|..+.+... 
T Consensus       228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k---rv~Ri~l-~~~~~Si~Vsqd~~P-  302 (342)
T PF06433_consen  228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK---RVARIPL-EHPIDSIAVSQDDKP-  302 (342)
T ss_dssp             HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE---EEEEEEE-EEEESEEEEESSSS--
T ss_pred             ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe---EEEEEeC-CCccceEEEccCCCc-
Confidence                     11122334433333333322   222       47777888766   5555542 246889999987754 


Q ss_pred             ceEEEEE-ecCCCcEEEEeeccCCCCC
Q 013717          402 GVVSVFS-GSLDGEIRAWQVSVSCPNS  427 (437)
Q Consensus       402 ~~~~l~s-~~~dg~i~iw~~~~~~~~~  427 (437)
                         +|++ ...++.+.+||..+++...
T Consensus       303 ---~L~~~~~~~~~l~v~D~~tGk~~~  326 (342)
T PF06433_consen  303 ---LLYALSAGDGTLDVYDAATGKLVR  326 (342)
T ss_dssp             ---EEEEEETTTTEEEEEETTT--EEE
T ss_pred             ---EEEEEcCCCCeEEEEeCcCCcEEe
Confidence               5654 4568999999999987643

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.67  E-value=0.033  Score=48.73  Aligned_cols=180  Identities=11%  Similarity=0.069  Sum_probs=101.8

Q ss_pred             EeCC-CeEEEEECCCcEEEEECCCcceEEEee-----cccccEEEEEEecCCeEEEEeCC------------CeEEEecC
Q 013717          219 AVNN-GLIYSVSWDKSLKIWRASDLRCLESIK-----AHEDAVNAVAVSAGGTVYTGSAD------------RKIRVWAK  280 (437)
Q Consensus       219 ~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~l~~~~~d------------g~v~iwd~  280 (437)
                      ..+. ..|+++ ..| +.+++.+++..+..+.     ......+.+...|+|.+..+...            |.|..+|.
T Consensus        73 ~~d~~g~Lv~~-~~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p  150 (307)
T COG3386          73 LIDAGGRLIAC-EHG-VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP  150 (307)
T ss_pred             eecCCCeEEEE-ccc-cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC
Confidence            3344 444444 333 5666766555533332     12245677888999998777766            22333332


Q ss_pred             CCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-CCcEEEEECCC--Cccce-EEeeeecccccce--EEEEeeCC
Q 013717          281 PFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-DRSILVWDRED--SANHM-VVTGALRGHGKAI--LCLINVAG  354 (437)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~--~~~~~-~~~~~~~~~~~~i--~~~~~~~~  354 (437)
                      .     ....+.+..+-...+.|+||||++.|+.+.. .+.|+-|++..  +.... ..........+..  .++.-.+.
T Consensus       151 ~-----g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~  225 (307)
T COG3386         151 D-----GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN  225 (307)
T ss_pred             C-----CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC
Confidence            1     1233344444556689999999988877765 47888888762  11000 0011111112222  45555566


Q ss_pred             EEEEEeCCC-cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC
Q 013717          355 LLMSGSADR-TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD  412 (437)
Q Consensus       355 ~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d  412 (437)
                      +.+++..+| .|.+|+.. ++   ++....-....+++++|-.....   .+++|+...
T Consensus       226 lw~~a~~~g~~v~~~~pd-G~---l~~~i~lP~~~~t~~~FgG~~~~---~L~iTs~~~  277 (307)
T COG3386         226 LWVAAVWGGGRVVRFNPD-GK---LLGEIKLPVKRPTNPAFGGPDLN---TLYITSARS  277 (307)
T ss_pred             EEEecccCCceEEEECCC-Cc---EEEEEECCCCCCccceEeCCCcC---EEEEEecCC
Confidence            554444444 89999988 55   66666666578889988764322   356666554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.66  E-value=0.047  Score=50.53  Aligned_cols=220  Identities=12%  Similarity=0.127  Sum_probs=100.9

Q ss_pred             ccCCeEEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC-CeEEEEecCCeEEEEeCCCCc
Q 013717           97 HKLPIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD-GKIFTAHQDCKIRVWQLTPTK  173 (437)
Q Consensus        97 h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~~~dg~i~iwd~~~~~  173 (437)
                      ..-....+.++  |++++.++++.-.|+....  ++..        ..+.-...+|.+ +.+++-...++|.++.--+.+
T Consensus        31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~~--~r~k--------~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~  100 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTALA--WRNK--------AFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNE  100 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEETTEEEEEETTT--TEEE--------EEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-
T ss_pred             CCcCCeeEEECCCCCEEEEEcCCEEEEEEccC--Cccc--------ccCceeEEEEecCccEEEEECCCeEEEEEcCccc
Confidence            34457788887  8888887777777777443  2221        224445677775 458888888999996322222


Q ss_pred             ccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEeecccc
Q 013717          174 HHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHED  253 (437)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  253 (437)
                      ....+.                               ....+..+-. +..|...+ ++.|.+||.++++.+..+...  
T Consensus       101 ~~k~i~-------------------------------~~~~~~~If~-G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--  145 (443)
T PF04053_consen  101 VVKSIK-------------------------------LPFSVEKIFG-GNLLGVKS-SDFICFYDWETGKLIRRIDVS--  145 (443)
T ss_dssp             TT------------------------------------SS-EEEEE--SSSEEEEE-TTEEEEE-TTT--EEEEESS---
T ss_pred             cceEEc-------------------------------CCcccceEEc-CcEEEEEC-CCCEEEEEhhHcceeeEEecC--
Confidence            111111                               1112333332 44555554 448999999999999998633  


Q ss_pred             cEEEEEEecCCeEEEEeCCCeEEEecCCCC------c-ccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEEC
Q 013717          254 AVNAVAVSAGGTVYTGSADRKIRVWAKPFN------E-KRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDR  326 (437)
Q Consensus       254 ~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~------~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (437)
                      .|..+.|++++.+++-..+..+.+++....      . ........+..-...|.+..|..|  .++-.+.. .++.  +
T Consensus       146 ~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l  220 (443)
T PF04053_consen  146 AVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--L  220 (443)
T ss_dssp             E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--E
T ss_pred             CCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--E
Confidence            389999999998443334557777754322      0 000012222222456777777755  33333333 4544  2


Q ss_pred             CCCccceEEeeeecccccceEEEEeeC--CEEEEEeCCCcEEEeeCC
Q 013717          327 EDSANHMVVTGALRGHGKAILCLINVA--GLLMSGSADRTVRIWQRG  371 (437)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~i~iwd~~  371 (437)
                      ..++..  ....+   ..++.-+...+  +.+.....|+.+..+.+.
T Consensus       221 ~~Ge~~--~i~~l---d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  221 VNGETG--IIAHL---DKPLYLLGYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             ETTEEE--EEEE----SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred             EcCCcc--eEEEc---CCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence            222111  11111   12222333333  566666677777666554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.60  E-value=0.04  Score=48.02  Aligned_cols=151  Identities=13%  Similarity=0.081  Sum_probs=83.1

Q ss_pred             CeEEEEECCCcEEEEECC-CcceEEEee----cccccEE-EEEEecC-CeEEEEeCCCeEEEecCCCCcccceeeEEeeC
Q 013717          223 GLIYSVSWDKSLKIWRAS-DLRCLESIK----AHEDAVN-AVAVSAG-GTVYTGSADRKIRVWAKPFNEKRHALIATLEK  295 (437)
Q Consensus       223 ~~l~~~~~dg~i~iwd~~-~~~~~~~~~----~~~~~v~-~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  295 (437)
                      +.+.+.+.||.+.-..+. .|+......    ...+++. .-++... +.++.-+.+|.|+-.|+.....  +....+..
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~--~~~~~~~~  225 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA--KFGKPWSL  225 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE--EEEEEEES
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc--cccCcccc
Confidence            678888999999988887 555543321    1122222 2233433 3477788999999988865442  22222221


Q ss_pred             c----------cccEEEEEEccCCCEEEEEeCC----------CcEEEEECCCCccceEEeeeecccccceEEEEeeC--
Q 013717          296 H----------KSAVNALALSDDGTVLFSGACD----------RSILVWDREDSANHMVVTGALRGHGKAILCLINVA--  353 (437)
Q Consensus       296 ~----------~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--  353 (437)
                      .          .+.-.-+++++..++|++.-..          ..|.+||+.+.++...+..     ...+.++..+.  
T Consensus       226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-----~~~~~Si~Vsqd~  300 (342)
T PF06433_consen  226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-----EHPIDSIAVSQDD  300 (342)
T ss_dssp             S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-----EEEESEEEEESSS
T ss_pred             cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-----CCccceEEEccCC
Confidence            1          1223346777765555553222          1477888887765443321     12344555443  


Q ss_pred             C-EEEE-EeCCCcEEEeeCCCCCCeeeeeeec
Q 013717          354 G-LLMS-GSADRTVRIWQRGSDGRFGCLAVLE  383 (437)
Q Consensus       354 ~-~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~  383 (437)
                      . +|++ ...++.+.+||..+++   .+..+.
T Consensus       301 ~P~L~~~~~~~~~l~v~D~~tGk---~~~~~~  329 (342)
T PF06433_consen  301 KPLLYALSAGDGTLDVYDAATGK---LVRSIE  329 (342)
T ss_dssp             S-EEEEEETTTTEEEEEETTT-----EEEEE-
T ss_pred             CcEEEEEcCCCCeEEEEeCcCCc---EEeehh
Confidence            3 5554 4568999999999987   555544

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.59  E-value=0.074  Score=50.81  Aligned_cols=265  Identities=11%  Similarity=0.093  Sum_probs=137.0

Q ss_pred             EEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCc--ccEE-EEEEeCCeEEEEe------cCCeEEEEeCCCCc
Q 013717          104 IAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSS--GSVK-SVTFCDGKIFTAH------QDCKIRVWQLTPTK  173 (437)
Q Consensus       104 l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~--~~v~-~l~~~~~~l~s~~------~dg~i~iwd~~~~~  173 (437)
                      +++.+..++.++.+ .|.-.|.++++..-.....   .+.  ..+. .-...++.++.+.      .+|.|..+|.++++
T Consensus       116 ~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~---~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~  192 (527)
T TIGR03075       116 VALYDGKVFFGTLDARLVALDAKTGKVVWSKKNG---DYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGK  192 (527)
T ss_pred             ceEECCEEEEEcCCCEEEEEECCCCCEEeecccc---cccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCc
Confidence            34556677778877 9999999987443222221   111  1121 1223355666554      26899999999998


Q ss_pred             ccccccccCccccceee-ecCCCCeeEEeeccceeeecCCCcEE-EEEeCC--CeEEEEECC----------------Cc
Q 013717          174 HHKLKTTLPTVNDRLLR-FMLPNSYVTVRRHKKKLWIEHGDAVT-GLAVNN--GLIYSVSWD----------------KS  233 (437)
Q Consensus       174 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~--~~l~~~~~d----------------g~  233 (437)
                      ........+........ .................+..-...+. .+++++  ++++.+..+                ..
T Consensus       193 ~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s  272 (527)
T TIGR03075       193 LVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSS  272 (527)
T ss_pred             eeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCcccee
Confidence            77766655432110000 00000000000000011111122222 335555  455544311                26


Q ss_pred             EEEEECCCcceEEEeecccccE---------EEEEEecCCe----EEEEeCCCeEEEecCCCCcccce--ee--EEe---
Q 013717          234 LKIWRASDLRCLESIKAHEDAV---------NAVAVSAGGT----VYTGSADRKIRVWAKPFNEKRHA--LI--ATL---  293 (437)
Q Consensus       234 i~iwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~~----l~~~~~dg~v~iwd~~~~~~~~~--~~--~~~---  293 (437)
                      |.-.|+++|+....++.....+         .-+.+..+|+    ++.+..+|.+.+.|.++++....  ..  ..+   
T Consensus       273 ~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~  352 (527)
T TIGR03075       273 IVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATG  352 (527)
T ss_pred             EEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccc
Confidence            7788999999988876322211         1222223543    77899999999999876543100  00  000   


Q ss_pred             -eCc------------------cc-----------cEEEEEEccCCCEEEEEeCC-------------------------
Q 013717          294 -EKH------------------KS-----------AVNALALSDDGTVLFSGACD-------------------------  318 (437)
Q Consensus       294 -~~~------------------~~-----------~i~~~~~~~~~~~l~~~~~d-------------------------  318 (437)
                       ...                  ..           .-..++++|+..+++....+                         
T Consensus       353 ~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~  432 (527)
T TIGR03075       353 VDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTI  432 (527)
T ss_pred             cCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceecccccc
Confidence             000                  00           00125666666555544333                         


Q ss_pred             --------CcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717          319 --------RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       319 --------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~  374 (437)
                              |.|.-+|+.+++..............   .+...+.+++.++.+|.++.+|.++++
T Consensus       433 ~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~---~l~t~g~lvf~g~~~G~l~a~D~~TGe  493 (527)
T TIGR03075       433 KPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGG---VLATAGDLVFYGTLEGYFKAFDAKTGE  493 (527)
T ss_pred             CCCCCCCceeEEEEeCCCCceeeEecCCCCCCCc---ceEECCcEEEEECCCCeEEEEECCCCC
Confidence                    45777777777655544322111111   133456678888889999999999998

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.56  E-value=0.00067  Score=64.47  Aligned_cols=105  Identities=16%  Similarity=0.122  Sum_probs=79.7

Q ss_pred             EEEeCC--CeEEEEE----CCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCccccee
Q 013717          217 GLAVNN--GLIYSVS----WDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHAL  289 (437)
Q Consensus       217 ~~~~~~--~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~  289 (437)
                      -..|+|  .++++++    ..|.|-||- ++|++..... ..-.+++++|+|... |+.|-.-|.+.+|....    .+.
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~----~e~   93 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT----TET   93 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCC----cee
Confidence            346777  6777765    468888884 5666544332 233467899999988 88999999999996532    233


Q ss_pred             eEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECC
Q 013717          290 IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE  327 (437)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (437)
                      -.....|..+|..+.|+++|..++++..-|.|.+|...
T Consensus        94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            33445689999999999999999999999999999876

>smart00320 WD40 WD40 repeats

Probab=97.56  E-value=0.0003  Score=39.61  Aligned_cols=37  Identities=41%  Similarity=0.657  Sum_probs=32.7

Q ss_pred             eeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717          289 LIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD  325 (437)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (437)
                      ....+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4556667888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.55  E-value=0.00015  Score=58.02  Aligned_cols=141  Identities=16%  Similarity=0.153  Sum_probs=82.3

Q ss_pred             EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccc
Q 013717          266 VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKA  345 (437)
Q Consensus       266 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  345 (437)
                      +..-+.+|.|+-++++........   -..+...   .....-+..+++|+.+|.|++|.........   .....-...
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rs---e~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~---d~~~s~~e~  103 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRS---ERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHS---DRVCSGEES  103 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhh---hhhhhcc---eeecccCceEEeecccceEEEecCCccchHH---Hhhhccccc
Confidence            556677888888776532211111   0111111   1111235578999999999999986221111   111112334


Q ss_pred             eEEEEeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCC-CCeeEEEEEccCCCCceEEEEEe--cCCCcEEEEe
Q 013717          346 ILCLINVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHT-KPVKSLTAVTEEGQNGVVSVFSG--SLDGEIRAWQ  419 (437)
Q Consensus       346 i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~l~s~--~~dg~i~iw~  419 (437)
                      |.+..+.++   +..++..||.||.|++...+   .+.....|. .++.....+..+     +++..+  |.|..++.|+
T Consensus       104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k---~~g~~g~h~~~~~e~~ivv~sd-----~~i~~a~~S~d~~~k~W~  175 (238)
T KOG2444|consen  104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK---VLGYVGQHNFESGEELIVVGSD-----EFLKIADTSHDRVLKKWN  175 (238)
T ss_pred             ceeccccccccceeEEeccCCceeeeccccCc---eeeeeccccCCCcceeEEecCC-----ceEEeeccccchhhhhcc
Confidence            444444433   88899999999999998765   455555566 455554444443     267777  7788888888


Q ss_pred             eccC
Q 013717          420 VSVS  423 (437)
Q Consensus       420 ~~~~  423 (437)
                      +..-
T Consensus       176 ve~~  179 (238)
T KOG2444|consen  176 VEKI  179 (238)
T ss_pred             hhhh
Confidence            7654

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=0.041  Score=46.31  Aligned_cols=280  Identities=11%  Similarity=0.145  Sum_probs=165.4

Q ss_pred             CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcc
Q 013717           96 GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKH  174 (437)
Q Consensus        96 ~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~  174 (437)
                      .-.+-+..+.+++++...+..+ -++|.|+.+...-.+..+   -.-.+--.++..+++....+..|.-+.+.|+.+.+.
T Consensus        84 ~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~---lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpss  160 (370)
T COG5276          84 NARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGF---LNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSS  160 (370)
T ss_pred             ehhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceecc---ccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCC
Confidence            5667778888889999999988 999999988533222222   112255567777788766676566677889987654


Q ss_pred             cccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcce---EEEeecc
Q 013717          175 HKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRC---LESIKAH  251 (437)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~  251 (437)
                      .......                           .........++.+.++...+..|+-+.+.|+.....   +... ..
T Consensus       161 P~lagry---------------------------a~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~-n~  212 (370)
T COG5276         161 PQLAGRY---------------------------ALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSY-NT  212 (370)
T ss_pred             ceeeeee---------------------------ccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEE-ec
Confidence            3332211                           123334467888888999999999999999976532   2222 23


Q ss_pred             cccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCcccc--EEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 013717          252 EDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSA--VNALALSDDGTVLFSGACDRSILVWDREDS  329 (437)
Q Consensus       252 ~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (437)
                      ...+.++..+++..+++....| +.+-|..... ........+ ...+  ++.+..  .+++...+..+.-+.+-|+.+.
T Consensus       213 g~g~~sv~vsdnr~y~vvy~eg-vlivd~s~~s-sp~~~gsye-t~~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp  287 (370)
T COG5276         213 GPGTYSVSVSDNRAYLVVYDEG-VLIVDVSGPS-SPTVFGSYE-TSNPVSISTVPV--SGEYAYVADGAKGLPIIDISNP  287 (370)
T ss_pred             CCceEEEEecCCeeEEEEcccc-eEEEecCCCC-CceEeeccc-cCCcccccceec--ccceeeeeccccCceeEeccCC
Confidence            4478888887665566655555 4455554222 112222222 2222  222333  4677777777888888898876


Q ss_pred             ccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEe
Q 013717          330 ANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSG  409 (437)
Q Consensus       330 ~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~  409 (437)
                      ..... ...+.........+...++++..+..+ ...+-+....+   ......+....+.+.+.+-+.     +.+.+.
T Consensus       288 ~spfl-~ss~~t~g~~a~gi~ay~~y~yiadkn-~g~vV~~s~~s---~m~~~~g~~ti~~s~~v~~~~-----q~~y~~  357 (370)
T COG5276         288 PSPFL-SSSLDTAGYQAAGIRAYGNYNYIADKN-TGAVVDASPPS---MMDKRPGRPTIGQSCDVSVDT-----QIIYST  357 (370)
T ss_pred             CCCch-hccccCCCccccceEEecCeeEeccCC-ceEEEeCCChh---hcccccCcceEeeecceEEEe-----eEEEEe
Confidence            54432 222222233445666667766666665 45555655433   111111111222333333333     368888


Q ss_pred             cCCCcEEEEeec
Q 013717          410 SLDGEIRAWQVS  421 (437)
Q Consensus       410 ~~dg~i~iw~~~  421 (437)
                      ..++-+.+|+..
T Consensus       358 d~~~gl~i~~~~  369 (370)
T COG5276         358 DYNGGLSIIEYL  369 (370)
T ss_pred             ecCCCEEEEEec
Confidence            899999999863

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.0005  Score=63.13  Aligned_cols=92  Identities=16%  Similarity=0.137  Sum_probs=73.0

Q ss_pred             CCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEE-EEEEecCCe-EEEEeCCCeEEEecCCCCcccc
Q 013717          212 GDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVN-AVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH  287 (437)
Q Consensus       212 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~  287 (437)
                      ...|.-+.|+|  ..+|.+..+|.|.+..+. .+.+.++..+...++ +++|.|||+ +++|-.||+|++-|+..+... 
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l-   97 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL-   97 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce-
Confidence            45678889999  999999999999999987 888888886666777 999999999 999999999999998765521 


Q ss_pred             eeeEEeeCccccEEEEEEcc
Q 013717          288 ALIATLEKHKSAVNALALSD  307 (437)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~  307 (437)
                        ..........|.++-|.+
T Consensus        98 --~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 --VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             --eccccccccchheeeccc
Confidence              111222456677777763

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.52  E-value=0.0054  Score=59.94  Aligned_cols=134  Identities=11%  Similarity=0.126  Sum_probs=90.9

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCc-ccEEEEEEe-------CCeEEEEecCCeEEEEeCCCCcccccccccCcccccee
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSS-GSVKSVTFC-------DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLL  189 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~-~~v~~l~~~-------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  189 (437)
                      .|+-.|++.|  +.+..+.   .|. .+|..++-.       +...+.|-.+..+..||.+-.... ....         
T Consensus       505 ~ly~mDLe~G--KVV~eW~---~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k-~v~~---------  569 (794)
T PF08553_consen  505 KLYKMDLERG--KVVEEWK---VHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK-LVDS---------  569 (794)
T ss_pred             ceEEEecCCC--cEEEEee---cCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc-eeec---------
Confidence            8888888885  4555553   233 336666543       233677777888999998853211 0000         


Q ss_pred             eecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEE
Q 013717          190 RFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYT  268 (437)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~  268 (437)
                                    ..+. ........|++-.. ++||+|+.+|.||+||--..+....+.+...+|..|..+.||+.+.
T Consensus       570 --------------~~k~-Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwil  634 (794)
T PF08553_consen  570 --------------QSKQ-YSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWIL  634 (794)
T ss_pred             --------------cccc-cccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEE
Confidence                          0000 12455677888887 9999999999999999543333444557789999999999999777


Q ss_pred             EeCCCeEEEecCC
Q 013717          269 GSADRKIRVWAKP  281 (437)
Q Consensus       269 ~~~dg~v~iwd~~  281 (437)
                      |+.+..|.+++..
T Consensus       635 aTc~tyLlLi~t~  647 (794)
T PF08553_consen  635 ATCKTYLLLIDTL  647 (794)
T ss_pred             EeecceEEEEEEe
Confidence            7778888888753

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>smart00320 WD40 WD40 repeats

Probab=97.49  E-value=0.00033  Score=39.42  Aligned_cols=38  Identities=37%  Similarity=0.563  Sum_probs=32.9

Q ss_pred             eeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717          377 GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       377 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~  419 (437)
                      .+...+..|...|.++.|.+.+.     ++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGK-----YLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCC-----EEEEecCCCeEEEcC
Confidence            35677778999999999998773     799999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.47  E-value=0.031  Score=53.80  Aligned_cols=191  Identities=17%  Similarity=0.254  Sum_probs=102.2

Q ss_pred             EEEeCC-CeEEEEECC------CcEEEEECCCcceEEE--eecccccEEEEEEecCCe-EEEEeCCCe-----EEEecCC
Q 013717          217 GLAVNN-GLIYSVSWD------KSLKIWRASDLRCLES--IKAHEDAVNAVAVSAGGT-VYTGSADRK-----IRVWAKP  281 (437)
Q Consensus       217 ~~~~~~-~~l~~~~~d------g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~-l~~~~~dg~-----v~iwd~~  281 (437)
                      ++++.+ ...++|+.|      ..+..||..+.+-...  +...... .+++. -+|. .++|+.||.     +-.||..
T Consensus       327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~-~~v~~-l~g~iYavGG~dg~~~l~svE~YDp~  404 (571)
T KOG4441|consen  327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSD-FGVAV-LDGKLYAVGGFDGEKSLNSVECYDPV  404 (571)
T ss_pred             cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccc-ceeEE-ECCEEEEEeccccccccccEEEecCC
Confidence            444444 677888888      3577888877653331  1111111 12222 2666 788888864     6677765


Q ss_pred             CCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC------cEEEEECCCCccceEEeeeecccccceEEEEeeCCE
Q 013717          282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR------SILVWDREDSANHMVVTGALRGHGKAILCLINVAGL  355 (437)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  355 (437)
                      ++.  +..+..+.......-.+.+  +|+..++|+.++      ++..||..+.+.  ..................++.+
T Consensus       405 ~~~--W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W--~~~~~M~~~R~~~g~a~~~~~i  478 (571)
T KOG4441|consen  405 TNK--WTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTW--TLIAPMNTRRSGFGVAVLNGKI  478 (571)
T ss_pred             CCc--ccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCce--eecCCcccccccceEEEECCEE
Confidence            433  3333322221222222222  577778887554      567888877542  2222222222222344455667


Q ss_pred             EEEEeCCCc-----EEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCc-----EEEEeeccC
Q 013717          356 LMSGSADRT-----VRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGE-----IRAWQVSVS  423 (437)
Q Consensus       356 l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~-----i~iw~~~~~  423 (437)
                      .+.|+.|+.     |..||..+.+ |..+..+......+....   .++    ++.+.|+.||.     |..||..+.
T Consensus       479 YvvGG~~~~~~~~~VE~ydp~~~~-W~~v~~m~~~rs~~g~~~---~~~----~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  479 YVVGGFDGTSALSSVERYDPETNQ-WTMVAPMTSPRSAVGVVV---LGG----KLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             EEECCccCCCccceEEEEcCCCCc-eeEcccCccccccccEEE---ECC----EEEEEecccCccccceeEEcCCCCC
Confidence            888887763     7778888755 444444443333332222   222    37888888875     556665544

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=0.092  Score=48.05  Aligned_cols=221  Identities=14%  Similarity=0.108  Sum_probs=128.9

Q ss_pred             EEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717          145 VKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN  221 (437)
Q Consensus       145 v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  221 (437)
                      -..++.++..   ++....++.|.+.|..+........                             .+.  ....++++
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~-----------------------------vG~--~P~~~~~~  124 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIP-----------------------------VGL--GPVGLAVD  124 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEee-----------------------------ecc--CCceEEEC
Confidence            3455555332   5555567889999966554322221                             112  34566776


Q ss_pred             C--CeEEEEEC---CCcEEEEECCCcceEEEeecccccEEEEEEecCCe-E-EEEeCCCeEEEecCCCCcccceeeEEee
Q 013717          222 N--GLIYSVSW---DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-V-YTGSADRKIRVWAKPFNEKRHALIATLE  294 (437)
Q Consensus       222 ~--~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~  294 (437)
                      +  +.++.+..   ++++.+.|..+.+.+........+ ..+++.|+|. + ++-..++.|.++|...............
T Consensus       125 ~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~  203 (381)
T COG3391         125 PDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLV  203 (381)
T ss_pred             CCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccc
Confidence            6  55555554   789999999999888886543344 8899999998 4 4444789999998654431100000011


Q ss_pred             CccccEEEEEEccCCCEEEEEeCC---CcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEe-CCCcEEEeeC
Q 013717          295 KHKSAVNALALSDDGTVLFSGACD---RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGS-ADRTVRIWQR  370 (437)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~-~dg~i~iwd~  370 (437)
                      .-......+.++|+|+++.+....   +.+...|..++.........-.. ...-..+.+.+..+.+.. ..+.+.+-|.
T Consensus       204 ~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~  282 (381)
T COG3391         204 GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDG  282 (381)
T ss_pred             ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeC
Confidence            223445778999999977666554   58888898765422211111111 222345566677666653 3578999998


Q ss_pred             CCCCCeeeeeeecCCCCCeeEEEEEccC
Q 013717          371 GSDGRFGCLAVLEGHTKPVKSLTAVTEE  398 (437)
Q Consensus       371 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~  398 (437)
                      .+............-...+..+++.+..
T Consensus       283 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~  310 (381)
T COG3391         283 ATDRVVKTGPTGNEALGEPVSIAISPLY  310 (381)
T ss_pred             CCCceeeeecccccccccceeccceeec
Confidence            8766322222223223345566665543

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=0.0017  Score=59.83  Aligned_cols=94  Identities=16%  Similarity=0.087  Sum_probs=70.8

Q ss_pred             cccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEE-EEEEccCCCEEEEEeCCCcEEEEECCCC
Q 013717          252 EDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVN-ALALSDDGTVLFSGACDRSILVWDREDS  329 (437)
Q Consensus       252 ~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (437)
                      ...+.-+.|+|.-. +|.+..+|.|.+..+.     ++.+..+.-++..++ +++|.|||+.|+.|-.||+|++.|++++
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-----~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~   94 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-----WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG   94 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-----cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence            34678889999888 9999999999998654     345666665666666 9999999999999999999999999987


Q ss_pred             ccceEEeeeecccccceEEEEeeC
Q 013717          330 ANHMVVTGALRGHGKAILCLINVA  353 (437)
Q Consensus       330 ~~~~~~~~~~~~~~~~i~~~~~~~  353 (437)
                      ......   ...-...|.+..|+.
T Consensus        95 ~~l~~~---~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   95 GRLVSF---LFSVETDISKGIWDR  115 (665)
T ss_pred             Cceecc---ccccccchheeeccc
Confidence            643332   122344556666653

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.17  E-value=0.14  Score=44.64  Aligned_cols=281  Identities=12%  Similarity=0.105  Sum_probs=125.6

Q ss_pred             CccCCeEEEEee--CCEEEEEecCeEEEEeCCCC-ceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCC
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSHEINVYDRTGT-TWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPT  172 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~  172 (437)
                      +-...+..|+|.  ..-+++|..+.| +-..+.+ .++....- ....-.-...+|.|.++....++..+. .+--.+.+
T Consensus        14 ~t~~~l~dV~F~d~~~G~~VG~~g~i-l~T~DGG~tW~~~~~~-~~~~~~~~l~~I~f~~~~g~ivG~~g~-ll~T~DgG   90 (302)
T PF14870_consen   14 PTDKPLLDVAFVDPNHGWAVGAYGTI-LKTTDGGKTWQPVSLD-LDNPFDYHLNSISFDGNEGWIVGEPGL-LLHTTDGG   90 (302)
T ss_dssp             S-SS-EEEEEESSSS-EEEEETTTEE-EEESSTTSS-EE------S-----EEEEEEEETTEEEEEEETTE-EEEESSTT
T ss_pred             CCCCceEEEEEecCCEEEEEecCCEE-EEECCCCccccccccC-CCccceeeEEEEEecCCceEEEcCCce-EEEecCCC
Confidence            556689999998  455555555433 2222222 34443321 001112356788888766444555564 34444445


Q ss_pred             cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcce-EEEeecc
Q 013717          173 KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRC-LESIKAH  251 (437)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~  251 (437)
                      +....+......                          ......-....+.....++..|.|..=. ..++. .......
T Consensus        91 ~tW~~v~l~~~l--------------------------pgs~~~i~~l~~~~~~l~~~~G~iy~T~-DgG~tW~~~~~~~  143 (302)
T PF14870_consen   91 KTWERVPLSSKL--------------------------PGSPFGITALGDGSAELAGDRGAIYRTT-DGGKTWQAVVSET  143 (302)
T ss_dssp             SS-EE----TT---------------------------SS-EEEEEEEETTEEEEEETT--EEEES-STTSSEEEEE-S-
T ss_pred             CCcEEeecCCCC--------------------------CCCeeEEEEcCCCcEEEEcCCCcEEEeC-CCCCCeeEcccCC
Confidence            443332210000                          1111222233344444455555543322 22222 2222345


Q ss_pred             cccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 013717          252 EDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSA  330 (437)
Q Consensus       252 ~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  330 (437)
                      .+.+..+..+++|. ++++.....+.-||-  ....+.+..  +.....|..|.|.|++.+.+.+ ..|.|+.=+.....
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~--G~~~w~~~~--r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~  218 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDP--GQTTWQPHN--RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG  218 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-T--T-SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecC--CCccceEEc--cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence            57788888899999 445544444557753  222233322  2346789999999998776655 88888887722111


Q ss_pred             cce-EEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEE
Q 013717          331 NHM-VVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFS  408 (437)
Q Consensus       331 ~~~-~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s  408 (437)
                      ... ............+..+++.++ .+.+++..|.+ +.....++.++.......-...++.|.|.++.      .-+.
T Consensus       219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~------~gf~  291 (302)
T PF14870_consen  219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD------KGFV  291 (302)
T ss_dssp             EEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETT------EEEE
T ss_pred             cccccccCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCC------ceEE
Confidence            111 111111122334688888754 55556666644 44566677666655555556678899998765      3556


Q ss_pred             ecCCCcEEEE
Q 013717          409 GSLDGEIRAW  418 (437)
Q Consensus       409 ~~~dg~i~iw  418 (437)
                      .+.+|.|.-|
T Consensus       292 lG~~G~ll~~  301 (302)
T PF14870_consen  292 LGQDGVLLRY  301 (302)
T ss_dssp             E-STTEEEEE
T ss_pred             ECCCcEEEEe
Confidence            6778887655

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.16  E-value=0.1  Score=49.59  Aligned_cols=255  Identities=10%  Similarity=0.054  Sum_probs=126.9

Q ss_pred             EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeec-cceeee--cCCCcE--EEEEeCCCeEEEEE
Q 013717          155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRH-KKKLWI--EHGDAV--TGLAVNNGLIYSVS  229 (437)
Q Consensus       155 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~v--~~~~~~~~~l~~~~  229 (437)
                      |.+|+..|.++++-+.+++.+..+..+......-..+......+.-... ......  .|.-.+  +.-.++.++++.-.
T Consensus        69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find  148 (635)
T PRK02888         69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND  148 (635)
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence            8899999999999999988766655443222211111111110000000 000000  011111  11122336666655


Q ss_pred             C-CCcEEEEECCCcceEEEee-cccccEEE-------------------EEEecCCe-EE-EEeCCCeEEEecCCCCccc
Q 013717          230 W-DKSLKIWRASDLRCLESIK-AHEDAVNA-------------------VAVSAGGT-VY-TGSADRKIRVWAKPFNEKR  286 (437)
Q Consensus       230 ~-dg~i~iwd~~~~~~~~~~~-~~~~~v~~-------------------~~~~~~~~-l~-~~~~dg~v~iwd~~~~~~~  286 (437)
                      . +..|...+++..++-+.+. .....+..                   +-+.|||+ +. ..-..+.+.+.|..+.   
T Consensus       149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etm---  225 (635)
T PRK02888        149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETM---  225 (635)
T ss_pred             CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccc---
Confidence            3 5567677776665544332 11111222                   22344555 21 2223456666665432   


Q ss_pred             ceeeEEeeCccccEEEEEEccCCCEEEEEeC----------------------------------------CCcEEEEEC
Q 013717          287 HALIATLEKHKSAVNALALSDDGTVLFSGAC----------------------------------------DRSILVWDR  326 (437)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------------------------------------dg~i~i~d~  326 (437)
                       +...++.- ......++++|+|+++++.+.                                        ++.|.+.|.
T Consensus       226 -eV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~  303 (635)
T PRK02888        226 -EVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDG  303 (635)
T ss_pred             -eEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEEC
Confidence             22232221 224466778888888877651                                        234566665


Q ss_pred             CC----CccceEEeeeecccccceEEEEeeCCE-EEEEeCCCcEEEeeCCCCCC---------eeeeeeecCCCCCeeEE
Q 013717          327 ED----SANHMVVTGALRGHGKAILCLINVAGL-LMSGSADRTVRIWQRGSDGR---------FGCLAVLEGHTKPVKSL  392 (437)
Q Consensus       327 ~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~---------~~~~~~~~~h~~~v~~l  392 (437)
                      ++    +...  ......+....=..+++++.+ ++++..+.++.|.|+...+.         .....+..--.++ ...
T Consensus       304 ~t~~~~~~~v--~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHT  380 (635)
T PRK02888        304 RKAANAGSAL--TRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHT  380 (635)
T ss_pred             CccccCCcce--EEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceE
Confidence            54    1111  111111111222445566665 45555689999999987442         0122333322333 355


Q ss_pred             EEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717          393 TAVTEEGQNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       393 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                      +|.+++.     ...|---|..|..|++..
T Consensus       381 aFDg~G~-----aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        381 AFDGRGN-----AYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EECCCCC-----EEEeEeecceeEEEehHH
Confidence            6877763     678888899999999987

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=97.08  E-value=0.14  Score=43.18  Aligned_cols=242  Identities=14%  Similarity=0.167  Sum_probs=149.6

Q ss_pred             Ccc-CCeEEEEeeCCEEEEEecCeEE---EEeCCCCce-eeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCC
Q 013717           96 GHK-LPIGCIAVHHNFLYAASSHEIN---VYDRTGTTW-TSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLT  170 (437)
Q Consensus        96 ~h~-~~V~~l~~~~~~l~s~~~d~v~---vwd~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~  170 (437)
                      ||- +.|..+...+.+-..+....+.   +|+...... ..+..+    .-.+-+..+.++.+....+..+.-+++.|+.
T Consensus        39 ghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i----~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS  114 (370)
T COG5276          39 GHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVI----NARDLFADVRVSEEYVYVADWSSGLRIVDIS  114 (370)
T ss_pred             eeccCCcccccccccccccccCceEeeccccCcccccCcceEEEE----ehhhhhheeEecccEEEEEcCCCceEEEecc
Confidence            776 7788888876665555544444   444432111 111111    2356677888888887777788889999999


Q ss_pred             CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcc---eEEE
Q 013717          171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLR---CLES  247 (437)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~  247 (437)
                      +......+..++                            ..+.-.++..+.++...+..|.-+.+.|+.+..   ....
T Consensus       115 ~P~sP~~~~~ln----------------------------t~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagr  166 (370)
T COG5276         115 TPDSPTLIGFLN----------------------------TDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGR  166 (370)
T ss_pred             CCCCcceecccc----------------------------CCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeee
Confidence            877655554332                            335667888888999999877778888887643   2333


Q ss_pred             eecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECC
Q 013717          248 IKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE  327 (437)
Q Consensus       248 ~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (437)
                      +......-..++++-+ .-..+..|+-+.+.|+... ....++.... ....+.++..+++-.+++..  +.-+.+-|..
T Consensus       167 ya~~~~d~~~v~ISGn-~AYvA~~d~GL~ivDVSnp-~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy--~egvlivd~s  241 (370)
T COG5276         167 YALPGGDTHDVAISGN-YAYVAWRDGGLTIVDVSNP-HSPVLIGSYN-TGPGTYSVSVSDNRAYLVVY--DEGVLIVDVS  241 (370)
T ss_pred             eccCCCCceeEEEecC-eEEEEEeCCCeEEEEccCC-CCCeEEEEEe-cCCceEEEEecCCeeEEEEc--ccceEEEecC
Confidence            3333444456666522 2455567888999998743 2333333322 33478888888775555554  3447888887


Q ss_pred             CCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717          328 DSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~  374 (437)
                      +.+....+-.........+..+...+++......+.-+.+-|+.+..
T Consensus       242 ~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~  288 (370)
T COG5276         242 GPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPP  288 (370)
T ss_pred             CCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCC
Confidence            76655443222222223344557778877777777778888877644

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.07  E-value=0.2  Score=45.49  Aligned_cols=121  Identities=19%  Similarity=0.172  Sum_probs=63.4

Q ss_pred             cccEEEEEEccCCCEEEEEeC--C---CcEEEEECCCCccceEEeeeecccccceEEEEe---eCC-EEEEEeCCCcEEE
Q 013717          297 KSAVNALALSDDGTVLFSGAC--D---RSILVWDREDSANHMVVTGALRGHGKAILCLIN---VAG-LLMSGSADRTVRI  367 (437)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~--d---g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~-~l~~~~~dg~i~i  367 (437)
                      ...+..+.|.++++.|+..-.  +   ..+.++|..++...........+--.....+.+   .+. +|.....||.-+|
T Consensus       183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl  262 (353)
T PF00930_consen  183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL  262 (353)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred             ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence            445788999999884444322  2   346777887765554443322221111112222   233 6666668886555


Q ss_pred             eeCCCCCCeeeeeeecCCCCCeeE-EEEEccCCCCceEEEEEecCC--CcEEEEeeccC
Q 013717          368 WQRGSDGRFGCLAVLEGHTKPVKS-LTAVTEEGQNGVVSVFSGSLD--GEIRAWQVSVS  423 (437)
Q Consensus       368 wd~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~~~~~l~s~~~d--g~i~iw~~~~~  423 (437)
                      |-+....  .....+....-.|+. +.+.++++    .+.+++..+  +.-.+|.+...
T Consensus       263 y~~~~~~--~~~~~lT~G~~~V~~i~~~d~~~~----~iyf~a~~~~p~~r~lY~v~~~  315 (353)
T PF00930_consen  263 YLYDLDG--GKPRQLTSGDWEVTSILGWDEDNN----RIYFTANGDNPGERHLYRVSLD  315 (353)
T ss_dssp             EEEETTS--SEEEESS-SSS-EEEEEEEECTSS----EEEEEESSGGTTSBEEEEEETT
T ss_pred             EEEcccc--cceeccccCceeecccceEcCCCC----EEEEEecCCCCCceEEEEEEeC
Confidence            5444322  234466656667866 44555544    366666653  35566655544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.06  E-value=0.18  Score=43.88  Aligned_cols=239  Identities=13%  Similarity=0.132  Sum_probs=127.0

Q ss_pred             eCCEEEEEecCeEEEEeCC-CCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCcc
Q 013717          107 HHNFLYAASSHEINVYDRT-GTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTV  184 (437)
Q Consensus       107 ~~~~l~s~~~d~v~vwd~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  184 (437)
                      .++.|+.|..+-+.+++.. ......+.       +...|..|...++. ++..-.|+.+.++++..-............
T Consensus         6 ~~~~L~vGt~~Gl~~~~~~~~~~~~~i~-------~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    6 WGDRLLVGTEDGLYVYDLSDPSKPTRIL-------KLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             CCCEEEEEECCCEEEEEecCCccceeEe-------ecceEEEEEEecccCEEEEEcCCccEEEEchhhcccccccccccc
Confidence            3888999977788889883 22222222       33449999998765 444444699999998865433211100000


Q ss_pred             ccceeeecCCCCeeEEeeccceeeecCCCcEEEEE----eCCCeEEEEECCCcEEEEECCCc-----ceEEEeecccccE
Q 013717          185 NDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA----VNNGLIYSVSWDKSLKIWRASDL-----RCLESIKAHEDAV  255 (437)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v  255 (437)
                      ..                .....-......+..++    ......+.......|.+|.....     +...++. ....+
T Consensus        79 ~~----------------~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~  141 (275)
T PF00780_consen   79 KS----------------RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPP  141 (275)
T ss_pred             cc----------------ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCc
Confidence            00                00000011223344444    11133344444558888887653     3445554 45778


Q ss_pred             EEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeC----------ccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717          256 NAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEK----------HKSAVNALALSDDGTVLFSGACDRSILVWD  325 (437)
Q Consensus       256 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (437)
                      .+++|. ++.++.|..+ ...+.|+.+...  ..+.....          ...++..+... ++.+|++-  |..-...|
T Consensus       142 ~~i~~~-~~~i~v~~~~-~f~~idl~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~  214 (275)
T PF00780_consen  142 SSIAFL-GNKICVGTSK-GFYLIDLNTGSP--SELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVN  214 (275)
T ss_pred             EEEEEe-CCEEEEEeCC-ceEEEecCCCCc--eEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEc
Confidence            999998 3446666654 467778764332  11111111          11233344443 45566653  33344445


Q ss_pred             CCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecC
Q 013717          326 REDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEG  384 (437)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  384 (437)
                      ... +......-.+   ......+.+...+|++.+.++ |.||++.+++   +++.+..
T Consensus       215 ~~G-~~~r~~~i~W---~~~p~~~~~~~pyli~~~~~~-iEV~~~~~~~---lvQ~i~~  265 (275)
T PF00780_consen  215 KNG-EPSRKSTIQW---SSAPQSVAYSSPYLIAFSSNS-IEVRSLETGE---LVQTIPL  265 (275)
T ss_pred             CCC-CcCcccEEEc---CCchhEEEEECCEEEEECCCE-EEEEECcCCc---EEEEEEC
Confidence            433 2222111112   234567777777888777655 9999999986   6666654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.01  E-value=0.0036  Score=61.42  Aligned_cols=99  Identities=18%  Similarity=0.290  Sum_probs=67.3

Q ss_pred             EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccc
Q 013717          266 VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKA  345 (437)
Q Consensus       266 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  345 (437)
                      ++.|+..|.+...|+..+-.   ....-....++|++++|+.+|+.++.|-.+|.|.+||+..++....+......+.+.
T Consensus       102 ivi~Ts~ghvl~~d~~~nL~---~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen  102 IVIGTSHGHVLLSDMTGNLG---PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             EEEEcCchhhhhhhhhcccc---hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            88999999999998875421   122233456899999999999999999999999999998765443332222222333


Q ss_pred             eEEEEeeCC-EEEEEeCCCcEEEee
Q 013717          346 ILCLINVAG-LLMSGSADRTVRIWQ  369 (437)
Q Consensus       346 i~~~~~~~~-~l~~~~~dg~i~iwd  369 (437)
                      +.....+++ .++++...|.  +|.
T Consensus       179 i~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  179 IFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             EEEEEeCCCcEEEEccCCCc--eEE
Confidence            333333334 5777777775  554

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.00  E-value=0.15  Score=42.15  Aligned_cols=138  Identities=9%  Similarity=0.047  Sum_probs=88.4

Q ss_pred             EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe-CCCeEEEEECCCc
Q 013717          155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV-NNGLIYSVSWDKS  233 (437)
Q Consensus       155 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~  233 (437)
                      ++.|+..+.+.--|..+++......                               -..+|.+-+. -.++++.|+..|.
T Consensus        26 v~igSHs~~~~avd~~sG~~~We~i-------------------------------lg~RiE~sa~vvgdfVV~GCy~g~   74 (354)
T KOG4649|consen   26 VVIGSHSGIVIAVDPQSGNLIWEAI-------------------------------LGVRIECSAIVVGDFVVLGCYSGG   74 (354)
T ss_pred             EEEecCCceEEEecCCCCcEEeehh-------------------------------hCceeeeeeEEECCEEEEEEccCc
Confidence            7888888888888888876443322                               2223332222 3478999999999


Q ss_pred             EEEEECCCcceEEEeecccccEEE-EEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCE
Q 013717          234 LKIWRASDLRCLESIKAHEDAVNA-VAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTV  311 (437)
Q Consensus       234 i~iwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  311 (437)
                      +++.+..+|.....+.... .|.+ ....+++. +..|+.|+..+..|.++..    .+...+...+...+-+..|-...
T Consensus        75 lYfl~~~tGs~~w~f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~~~~----cVykskcgG~~f~sP~i~~g~~s  149 (354)
T KOG4649|consen   75 LYFLCVKTGSQIWNFVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG----CVYKSKCGGGTFVSPVIAPGDGS  149 (354)
T ss_pred             EEEEEecchhheeeeeehh-hhccceEEcCCCceEEEecCCCcEEEecccccc----eEEecccCCceeccceecCCCce
Confidence            9999999998888776332 2222 23456666 9999999999999876543    45444444444444455563334


Q ss_pred             EEEEeCCCcEEEEECCC
Q 013717          312 LFSGACDRSILVWDRED  328 (437)
Q Consensus       312 l~~~~~dg~i~i~d~~~  328 (437)
                      |..+...|.+.--..+.
T Consensus       150 ly~a~t~G~vlavt~~~  166 (354)
T KOG4649|consen  150 LYAAITAGAVLAVTKNP  166 (354)
T ss_pred             EEEEeccceEEEEccCC
Confidence            45555566665555543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.98  E-value=0.45  Score=47.16  Aligned_cols=178  Identities=15%  Similarity=0.173  Sum_probs=106.5

Q ss_pred             cEEEEECCCcceEEEeec-c---cccEEEEEEecC-Ce-EEEEeC----------CCeEEEecCCCCcccceeeEEeeCc
Q 013717          233 SLKIWRASDLRCLESIKA-H---EDAVNAVAVSAG-GT-VYTGSA----------DRKIRVWAKPFNEKRHALIATLEKH  296 (437)
Q Consensus       233 ~i~iwd~~~~~~~~~~~~-~---~~~v~~~~~~~~-~~-l~~~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~  296 (437)
                      .++++|-.+.+.+...+- .   .-.|.+..|..| +. +++|+.          .|.|.+|.+.. ....+.+.... -
T Consensus       751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~v~e~~-v  828 (1096)
T KOG1897|consen  751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLELVAETV-V  828 (1096)
T ss_pred             EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceeeeeeee-e
Confidence            366777666665544331 1   123444557766 44 677652          57788886654 22223333322 2


Q ss_pred             cccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccce--EEEEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717          297 KSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI--LCLINVAGLLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~l~~~~~dg~i~iwd~~~~~  374 (437)
                      .+.+.++..- +|+++|.  -+..|++|++...+...    ....+...+  ..+...++.+++|.--+.+.+-..+..+
T Consensus       829 ~Gav~aL~~f-ngkllA~--In~~vrLye~t~~~eLr----~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e  901 (1096)
T KOG1897|consen  829 KGAVYALVEF-NGKLLAG--INQSVRLYEWTTERELR----IECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE  901 (1096)
T ss_pred             ccceeehhhh-CCeEEEe--cCcEEEEEEccccceeh----hhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence            3455555433 5666654  45689999997764222    223344444  4555678899999998888776665433


Q ss_pred             -CeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCC
Q 013717          375 -RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPN  426 (437)
Q Consensus       375 -~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  426 (437)
                       .+..++. .-+..+++++.+..++      .++-+..+|.+++-..+...+.
T Consensus       902 g~f~evAr-D~~p~Wmtaveil~~d------~ylgae~~gNlf~v~~d~~~~t  947 (1096)
T KOG1897|consen  902 GNFEEVAR-DYNPNWMTAVEILDDD------TYLGAENSGNLFTVRKDSDATT  947 (1096)
T ss_pred             CceEEeeh-hhCccceeeEEEecCc------eEEeecccccEEEEEecCCCCc
Confidence             1222222 2367788999888876      5677778899999887765443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.98  E-value=0.023  Score=51.69  Aligned_cols=138  Identities=17%  Similarity=0.221  Sum_probs=92.3

Q ss_pred             eEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe--------EEEEeCCCeEEEecCCCCcccceeeEEeeC
Q 013717          224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--------VYTGSADRKIRVWAKPFNEKRHALIATLEK  295 (437)
Q Consensus       224 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--------l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  295 (437)
                      ++..+.....++-.|++.|+.+.+++-+.. |+-+.+.|+.+        -+.|-.+..|.-||.+.....  .+...+.
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--kl~~~q~  424 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--KLAVVQS  424 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc--eeeeeec
Confidence            345566667789999999999999986665 77788888764        345667889999998744321  1222222


Q ss_pred             ----ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEE--eeCCEEEEEeCCCcEEEee
Q 013717          296 ----HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI--NVAGLLMSGSADRTVRIWQ  369 (437)
Q Consensus       296 ----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~l~~~~~dg~i~iwd  369 (437)
                          ......|.+-..+| ++++|+.+|.|++||- .+.+   ....+.+-..+|..+.  ++|.+|++. -+.++.+-+
T Consensus       425 kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~---AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~  498 (644)
T KOG2395|consen  425 KQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRR---AKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLID  498 (644)
T ss_pred             cccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhh---hhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEE
Confidence                23456677776666 8999999999999996 3222   2334566677776665  456665543 345666665


Q ss_pred             C
Q 013717          370 R  370 (437)
Q Consensus       370 ~  370 (437)
                      +
T Consensus       499 t  499 (644)
T KOG2395|consen  499 T  499 (644)
T ss_pred             E
Confidence            4

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.97  E-value=0.3  Score=45.11  Aligned_cols=245  Identities=15%  Similarity=0.191  Sum_probs=119.5

Q ss_pred             eeEEecCCCcceeeeecCccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeecccc----CCCCcccEEEEEEeC
Q 013717           79 TINFSSASHLCINSVQLGHKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTFND----NDSSSGSVKSVTFCD  152 (437)
Q Consensus        79 ~i~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~----~~~h~~~v~~l~~~~  152 (437)
                      .|.+++......-...+.+ +.|.++.|. .+.|+....+ .+++||+....   ...+..    ..-....+....+..
T Consensus        62 ~I~iys~sG~ll~~i~w~~-~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~~~  137 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDS-GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWFYK  137 (410)
T ss_pred             EEEEECCCCCEeEEEEECC-CCEEEEEECCCCeEEEEEcCCEEEEEeCCCce---eechhhhccccCcccccccccccCC
Confidence            4888877665433333344 899999999 6677777777 99999997532   111110    011222333344445


Q ss_pred             CeEEEEecCCeEEEEeCCCCc-ccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECC
Q 013717          153 GKIFTAHQDCKIRVWQLTPTK-HHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWD  231 (437)
Q Consensus       153 ~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d  231 (437)
                      ++++.-..++.+.+.+-.... ........+.......                  .......+..+.......+....+
T Consensus       138 ~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~------------------~~~~~~~i~~l~~~~~~~i~~~~g  199 (410)
T PF04841_consen  138 NGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFH------------------WWPSWTVIPLLSSDRVVEILLANG  199 (410)
T ss_pred             CCEEEECCCCeEEEEeCccccchhhccccCCCcccccc------------------cccccccceEeecCcceEEEEecC
Confidence            665555556665544322211 1111111111000000                  000001111112222444444555


Q ss_pred             CcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC-ccccEEEEEEccCC
Q 013717          232 KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK-HKSAVNALALSDDG  309 (437)
Q Consensus       232 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~  309 (437)
                      +.+.+.+-...+.   +. ..+++..|++||+++ +|.-..+|.+.+...+...    .+..+.- .......+.|+-+.
T Consensus       200 ~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~----~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  200 ETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE----KLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             CEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccc----eeEEeecCcCCCCcEEEEECCC
Confidence            6666554332211   21 346899999999999 8888888999888654322    2223322 23455666666443


Q ss_pred             CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCC
Q 013717          310 TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~  372 (437)
                      ..++.-  ...|.++..                .+.-..+.+++..++..-.|| +||+.-..
T Consensus       272 av~l~~--~~~l~lvg~----------------~~~~~~~~~~~~~~l~~E~DG-~riit~~~  315 (410)
T PF04841_consen  272 AVVLSW--EDELLLVGP----------------DGDSISFWYDGPVILVSEIDG-VRIITSTS  315 (410)
T ss_pred             cEEEEe--CCEEEEECC----------------CCCceEEeccCceEEeccCCc-eEEEeCCc
Confidence            222211  223333332                112233344444555566676 88876554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PHA03098 kelch-like protein; Provisional

Probab=96.94  E-value=0.22  Score=48.19  Aligned_cols=163  Identities=9%  Similarity=0.082  Sum_probs=76.0

Q ss_pred             EEEeCCCeEEEEECC-----CcEEEEECCCcceEEEee-cccccEEEEEEecCCe-EEEEeCC------CeEEEecCCCC
Q 013717          217 GLAVNNGLIYSVSWD-----KSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGGT-VYTGSAD------RKIRVWAKPFN  283 (437)
Q Consensus       217 ~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-l~~~~~d------g~v~iwd~~~~  283 (437)
                      .+.+....++.||.+     ..+..||..+.+-...-. .....-.+++. -+++ ++.|+.+      ..+..||..++
T Consensus       338 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~  416 (534)
T PHA03098        338 VTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTN  416 (534)
T ss_pred             EEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence            334445666777755     347778877654322111 01111112222 3566 6666632      45788887543


Q ss_pred             cccceeeEEeeCccccEEEEEEccCCCEEEEEeCC--------CcEEEEECCCCccceEEeeeecccccceEEEEeeCCE
Q 013717          284 EKRHALIATLEKHKSAVNALALSDDGTVLFSGACD--------RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGL  355 (437)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  355 (437)
                        .+..+..+....... +++ ..+++.++.|+.+        ..+.+||..+.+-.  ..............+..++.+
T Consensus       417 --~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~--~~~~~~~~r~~~~~~~~~~~i  490 (534)
T PHA03098        417 --KWSKGSPLPISHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT--ELSSLNFPRINASLCIFNNKI  490 (534)
T ss_pred             --eeeecCCCCccccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCCcee--eCCCCCcccccceEEEECCEE
Confidence              233222221111111 222 2356666666543        23888998765322  221111111112223345556


Q ss_pred             EEEEeCC-----CcEEEeeCCCCCCeeeeeeecCCCC
Q 013717          356 LMSGSAD-----RTVRIWQRGSDGRFGCLAVLEGHTK  387 (437)
Q Consensus       356 l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~  387 (437)
                      ++.|+.+     +.+.+||..+.. |..+..+....+
T Consensus       491 yv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~~~  526 (534)
T PHA03098        491 YVVGGDKYEYYINEIEVYDDKTNT-WTLFCKFPKVIG  526 (534)
T ss_pred             EEEcCCcCCcccceeEEEeCCCCE-EEecCCCccccc
Confidence            6667654     468888888644 444444333333

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.88  E-value=0.38  Score=44.76  Aligned_cols=197  Identities=13%  Similarity=0.121  Sum_probs=106.0

Q ss_pred             EEEEeCC--CeEEEE-ECCCc----EEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCC-----------eEE
Q 013717          216 TGLAVNN--GLIYSV-SWDKS----LKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADR-----------KIR  276 (437)
Q Consensus       216 ~~~~~~~--~~l~~~-~~dg~----i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg-----------~v~  276 (437)
                      ..+.++|  ++++.+ +..|.    |+++|+++++.+...-.. .....+.|.+++. |+....+.           .|.
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            3566776  555544 44444    999999999776543111 1223399999987 55554332           377


Q ss_pred             EecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC---C-CcEEEEECCCC---ccceEEeeeecccccceEEE
Q 013717          277 VWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC---D-RSILVWDREDS---ANHMVVTGALRGHGKAILCL  349 (437)
Q Consensus       277 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d-g~i~i~d~~~~---~~~~~~~~~~~~~~~~i~~~  349 (437)
                      .|++.+....-.++............+..++|+++|+....   + ..+++.|+...   ........  ....+....+
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~--~~~~~~~~~v  283 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS--PREDGVEYYV  283 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE--ESSSS-EEEE
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe--CCCCceEEEE
Confidence            77776554433343333222223678899999998775433   2 45788888764   22222221  1222333445


Q ss_pred             EeeCCEEEEEeC----CCcEEEeeCCCCCCeeeeeeecCCCC--CeeEEEEEccCCCCceEEEEEecCCC--cEEEEeec
Q 013717          350 INVAGLLMSGSA----DRTVRIWQRGSDGRFGCLAVLEGHTK--PVKSLTAVTEEGQNGVVSVFSGSLDG--EIRAWQVS  421 (437)
Q Consensus       350 ~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~l~s~~~dg--~i~iw~~~  421 (437)
                      ...++.++.-+.    .+.|.-.++...........+..|..  .+..+....+      .+++..-.++  .|+++++.
T Consensus       284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~------~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD------YLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT------EEEEEEEETTEEEEEEEETT
T ss_pred             EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECC------EEEEEEEECCccEEEEEECC
Confidence            455663333222    35666677776552122235555655  4555555433      3777777776  47778877

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.83  E-value=0.16  Score=49.02  Aligned_cols=186  Identities=18%  Similarity=0.214  Sum_probs=94.3

Q ss_pred             cEEEEEeCC--CeEEEEE------CCC--cEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCC-CeEEEecCC
Q 013717          214 AVTGLAVNN--GLIYSVS------WDK--SLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSAD-RKIRVWAKP  281 (437)
Q Consensus       214 ~v~~~~~~~--~~l~~~~------~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d-g~v~iwd~~  281 (437)
                      .+...++++  +.++...      .|.  .|.+++. .+.. ..+.. ....+.-.|+|+|. +++.... ..+++.+-.
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence            456667776  4444443      243  4555554 2222 33322 22478889999977 6666533 222222211


Q ss_pred             CCcccceee-EEee------CccccEEEEEEccCCCEEEEEeCCCcEEE---EECCCCccceEEeeeec-ccccceEEEE
Q 013717          282 FNEKRHALI-ATLE------KHKSAVNALALSDDGTVLFSGACDRSILV---WDREDSANHMVVTGALR-GHGKAILCLI  350 (437)
Q Consensus       282 ~~~~~~~~~-~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~~~~~~~~~~-~~~~~i~~~~  350 (437)
                      ...   ++. ....      .....|..+.|+|||..++... +|.|++   -....+.....-...+. +-...+..+.
T Consensus       428 ~~g---ql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~  503 (591)
T PRK13616        428 ATG---QLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD  503 (591)
T ss_pred             CCc---eEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence            100   110 0000      2245799999999999888765 577877   44334431111111111 2223346677


Q ss_pred             eeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecC--CCCCeeEEEEEccCCCCceEEEEEecCCCcE
Q 013717          351 NVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEG--HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEI  415 (437)
Q Consensus       351 ~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  415 (437)
                      |.++ .|+++..++...+|.+.-......  .+.+  ...++..|+-.+.       -++....+|.+
T Consensus       504 W~~~~~L~V~~~~~~~~v~~v~vDG~~~~--~~~~~n~~~~v~~vaa~~~-------~iyv~~~~g~~  562 (591)
T PRK13616        504 WRTGDSLVVGRSDPEHPVWYVNLDGSNSD--ALPSRNLSAPVVAVAASPS-------TVYVTDARAVL  562 (591)
T ss_pred             EecCCEEEEEecCCCCceEEEecCCcccc--ccCCCCccCceEEEecCCc-------eEEEEcCCceE
Confidence            7755 455666655555565443331111  1122  3567888887763       25555666633

>PHA03098 kelch-like protein; Provisional

Probab=96.78  E-value=0.21  Score=48.28  Aligned_cols=191  Identities=10%  Similarity=0.071  Sum_probs=90.2

Q ss_pred             EEEeCCCeEEEEECCC------cEEEEECCCcceEEEe--ecccccEEEEEEecCCe-EEEEeCC-----CeEEEecCCC
Q 013717          217 GLAVNNGLIYSVSWDK------SLKIWRASDLRCLESI--KAHEDAVNAVAVSAGGT-VYTGSAD-----RKIRVWAKPF  282 (437)
Q Consensus       217 ~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~-l~~~~~d-----g~v~iwd~~~  282 (437)
                      ++......++.|+.++      .+..||..+.+....-  ....... +++. -++. ++.|+.+     ..+..||..+
T Consensus       290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~  367 (534)
T PHA03098        290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTV-FNNRIYVIGGIYNSISLNTVESWKPGE  367 (534)
T ss_pred             EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEE-ECCEEEEEeCCCCCEecceEEEEcCCC
Confidence            3344446666666542      5778888776542211  1111112 2222 2566 6777765     3466787754


Q ss_pred             CcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC------CcEEEEECCCCccceEEeeeecccccceEEEEeeCCEE
Q 013717          283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD------RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLL  356 (437)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l  356 (437)
                      +  .+.....+....... +++. -+++..+.|+.+      ..+..||..+.+-  ..............+....+.++
T Consensus       368 ~--~W~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W--~~~~~~p~~r~~~~~~~~~~~iy  441 (534)
T PHA03098        368 S--KWREEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKW--SKGSPLPISHYGGCAIYHDGKIY  441 (534)
T ss_pred             C--ceeeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCee--eecCCCCccccCceEEEECCEEE
Confidence            3  233322222111111 1222 256666777632      4588899876432  22211111111122333445566


Q ss_pred             EEEeCCC--------cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC-----CcEEEEeeccC
Q 013717          357 MSGSADR--------TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD-----GEIRAWQVSVS  423 (437)
Q Consensus       357 ~~~~~dg--------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~  423 (437)
                      +.|+.++        .+.+||..+.+ |..+..+....... +++.. ++     ++++.||.+     ..|.+||.++.
T Consensus       442 v~GG~~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~r~~~-~~~~~-~~-----~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        442 VIGGISYIDNIKVYNIVESYNPVTNK-WTELSSLNFPRINA-SLCIF-NN-----KIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             EECCccCCCCCcccceEEEecCCCCc-eeeCCCCCcccccc-eEEEE-CC-----EEEEEcCCcCCcccceeEEEeCCCC
Confidence            6665432        38888988654 43333322111111 12222 22     366677654     46788887754

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.66  E-value=0.082  Score=48.75  Aligned_cols=173  Identities=14%  Similarity=0.086  Sum_probs=91.2

Q ss_pred             EEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEe--CC--CeEEEecCCCCcccceeeEEeeCccccEEEEEEccC
Q 013717          234 LKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGS--AD--RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD  308 (437)
Q Consensus       234 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~--~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  308 (437)
                      +.+-|.. +.....+......+..-+|+|++. ++...  ..  ..+.++|+..+..  ..+..+.++   -..-+|+||
T Consensus       175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~--~~i~~~~g~---~~~P~fspD  248 (425)
T COG0823         175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR--PVILNFNGN---NGAPAFSPD  248 (425)
T ss_pred             EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc--ceeeccCCc---cCCccCCCC
Confidence            4444433 444455544555677778999987 43332  12  3588888865542  223333333   344689999


Q ss_pred             CCEEEEE-eCCCc--EEEEECCCCccceEEeeeecccccceEEEEeeCCEEE-EEeCCCc--EEEeeCCCCCCeeeeeee
Q 013717          309 GTVLFSG-ACDRS--ILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLM-SGSADRT--VRIWQRGSDGRFGCLAVL  382 (437)
Q Consensus       309 ~~~l~~~-~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~  382 (437)
                      |+.|+.. ..||.  |+++|+...... . .....+... -.++.++|..|+ +.+..|.  |.+++.+....  ...+.
T Consensus       249 G~~l~f~~~rdg~~~iy~~dl~~~~~~-~-Lt~~~gi~~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~  323 (425)
T COG0823         249 GSKLAFSSSRDGSPDIYLMDLDGKNLP-R-LTNGFGINT-SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTF  323 (425)
T ss_pred             CCEEEEEECCCCCccEEEEcCCCCcce-e-cccCCcccc-CccCCCCCCEEEEEeCCCCCcceEEECCCCCce--eEeec
Confidence            9877654 44654  566677665421 1 222222222 355666777444 4555665  55556555442  22222


Q ss_pred             cCCCCCeeEEEEEccCCCCceEEEEEecCCCc--EEEEeeccC
Q 013717          383 EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGE--IRAWQVSVS  423 (437)
Q Consensus       383 ~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~--i~iw~~~~~  423 (437)
                      .+-...  .-.|+|++..    +++....+|.  |.+.++.++
T Consensus       324 ~~~~~~--~p~~SpdG~~----i~~~~~~~g~~~i~~~~~~~~  360 (425)
T COG0823         324 SGGGNS--NPVWSPDGDK----IVFESSSGGQWDIDKNDLASG  360 (425)
T ss_pred             cCCCCc--CccCCCCCCE----EEEEeccCCceeeEEeccCCC
Confidence            222222  5568898863    4555544555  555555443

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.63  E-value=0.079  Score=52.59  Aligned_cols=107  Identities=16%  Similarity=0.237  Sum_probs=73.6

Q ss_pred             cEEEEEeCCCeEEEEECCCcEEEEECCCc-ceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeE
Q 013717          214 AVTGLAVNNGLIYSVSWDKSLKIWRASDL-RCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIA  291 (437)
Q Consensus       214 ~v~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~  291 (437)
                      .+.+.+.-...++.|+..|.+-..|+... .....-....++|++++|+.+|+ ++.|-.+|.|.+||+..+.    .++
T Consensus        91 ~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k----~l~  166 (1206)
T KOG2079|consen   91 GVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK----ILK  166 (1206)
T ss_pred             ceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc----cee
Confidence            44444544477899999999999887653 11122223467899999999999 8889999999999987543    455


Q ss_pred             EeeCccccEE---EEEEccCCCEEEEEeCCCcEEEEEC
Q 013717          292 TLEKHKSAVN---ALALSDDGTVLFSGACDRSILVWDR  326 (437)
Q Consensus       292 ~~~~~~~~i~---~~~~~~~~~~l~~~~~dg~i~i~d~  326 (437)
                      .+..+..+.+   .+.+..++..++++...|.  +|.+
T Consensus       167 ~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  167 VITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            5555544433   3444445667888888886  4554

>PRK13684 Ycf48-like protein; Provisional

Probab=96.60  E-value=0.5  Score=42.36  Aligned_cols=158  Identities=12%  Similarity=0.040  Sum_probs=88.7

Q ss_pred             cccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCcc
Q 013717          252 EDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSAN  331 (437)
Q Consensus       252 ~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (437)
                      ...+.++.+.|++.++..+..|.+..- .+.....+..+  .......++++.+.++++.++++ ..|.+++=....+..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~--~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPH--QRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEe--eCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence            557889999999886666666765432 11122233332  22345678999999999877765 567654322333322


Q ss_pred             ceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEec
Q 013717          332 HMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGS  410 (437)
Q Consensus       332 ~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~  410 (437)
                      -.............+..+.+.++ .++.++.+|.+. .....++.+..+.....-....+.+.|..++      ..+..+
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~------~~~~~G  320 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPE------KGFVLG  320 (334)
T ss_pred             cccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCC------ceEEEC
Confidence            11111110111233555665543 455666777554 4555555554443222223467888887665      356677


Q ss_pred             CCCcEEEEee
Q 013717          411 LDGEIRAWQV  420 (437)
Q Consensus       411 ~dg~i~iw~~  420 (437)
                      ..|.|.-|+=
T Consensus       321 ~~G~il~~~~  330 (334)
T PRK13684        321 QRGVLLRYVG  330 (334)
T ss_pred             CCceEEEecC
Confidence            8899887764

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.53  E-value=0.012  Score=34.80  Aligned_cols=32  Identities=19%  Similarity=0.255  Sum_probs=28.8

Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCcEEEEECC
Q 013717          296 HKSAVNALALSDDGTVLFSGACDRSILVWDRE  327 (437)
Q Consensus       296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (437)
                      ....|..++|+|...+||.++.+|.|.+|.+.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            34569999999999999999999999999983

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.50  E-value=0.08  Score=47.44  Aligned_cols=140  Identities=11%  Similarity=0.051  Sum_probs=89.1

Q ss_pred             EEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEE
Q 013717          256 NAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVV  335 (437)
Q Consensus       256 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (437)
                      +.+-|...++.+.+...|.+.=|-+.... ...++..-....++|.++.|++|.+.|++--.|..|.+++....+.....
T Consensus        26 ngvFfDDaNkqlfavrSggatgvvvkgpn-dDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~  104 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVRSGGATGVVVKGPN-DDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY  104 (657)
T ss_pred             cceeeccCcceEEEEecCCeeEEEEeCCC-CCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence            34444444443334444445545433211 11122222234569999999999999999999999999998554444444


Q ss_pred             eeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCC
Q 013717          336 TGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEG  399 (437)
Q Consensus       336 ~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  399 (437)
                      ....+.....|..+.|... -+|..+..| +-+|.....+  ..++..+.|.-.|+--.|+++..
T Consensus       105 ~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~  166 (657)
T KOG2377|consen  105 TQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETA  166 (657)
T ss_pred             HHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccc
Confidence            4444445566888888866 555555555 7888776644  34556667888888888888875

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.46  E-value=0.062  Score=49.02  Aligned_cols=144  Identities=11%  Similarity=0.141  Sum_probs=90.9

Q ss_pred             CEEEEEe-cC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe---------EEEEecCCeEEEEeCCCCccccc
Q 013717          109 NFLYAAS-SH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK---------IFTAHQDCKIRVWQLTPTKHHKL  177 (437)
Q Consensus       109 ~~l~s~~-~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---------l~s~~~dg~i~iwd~~~~~~~~~  177 (437)
                      ++|+..+ .. .++-.|++.|  +.+..+.   -|.. |+-+.+.|+.         -+.|-.|..|.-||.+-...- .
T Consensus       346 nlil~~~~~~~~l~klDIE~G--KIVeEWk---~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-k  418 (644)
T KOG2395|consen  346 NLILMDGGEQDKLYKLDIERG--KIVEEWK---FEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-K  418 (644)
T ss_pred             ceEeeCCCCcCcceeeecccc--eeeeEee---ccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-e
Confidence            4444433 33 7777788875  4455542   2333 6666666542         345566788888998732210 0


Q ss_pred             ccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeecccccEE
Q 013717          178 KTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVN  256 (437)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  256 (437)
                      +....                      .+. ........|++-.. .++++|+.+|.|++||-...+....+.+...+|.
T Consensus       419 l~~~q----------------------~kq-y~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~  475 (644)
T KOG2395|consen  419 LAVVQ----------------------SKQ-YSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIK  475 (644)
T ss_pred             eeeee----------------------ccc-cccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCcee
Confidence            00000                      000 01233445666555 9999999999999999733344445668889999


Q ss_pred             EEEEecCCeEEEEeCCCeEEEecCCC
Q 013717          257 AVAVSAGGTVYTGSADRKIRVWAKPF  282 (437)
Q Consensus       257 ~~~~~~~~~l~~~~~dg~v~iwd~~~  282 (437)
                      .+..+.+|+.+.|+.+..+.+.++..
T Consensus       476 hVdvtadGKwil~Tc~tyLlLi~t~~  501 (644)
T KOG2395|consen  476 HVDVTADGKWILATCKTYLLLIDTLI  501 (644)
T ss_pred             eEEeeccCcEEEEecccEEEEEEEec
Confidence            99999999988888888998887653

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.45  E-value=0.71  Score=42.32  Aligned_cols=196  Identities=16%  Similarity=0.175  Sum_probs=117.1

Q ss_pred             EEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeC---CCeEEEecCCCCcccce
Q 013717          216 TGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSA---DRKIRVWAKPFNEKRHA  288 (437)
Q Consensus       216 ~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~---dg~v~iwd~~~~~~~~~  288 (437)
                      ..+++++   +.++....++.|.+.|..+.+......... ....+++++++. +.++..   ++.+.+.|-.++.    
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~----  151 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK----  151 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe----
Confidence            3555655   355555567899999988877777765322 567899999997 544443   6888888765443    


Q ss_pred             eeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCccce-EEe-eeecccccceEEEEeeCCEEEEEeC-C--
Q 013717          289 LIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSANHM-VVT-GALRGHGKAILCLINVAGLLMSGSA-D--  362 (437)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~-~~~-~~~~~~~~~i~~~~~~~~~l~~~~~-d--  362 (437)
                      ..........+ ..++++|+|+.++... .++.|.++|........ ... ....+.......+..++..+.+... +  
T Consensus       152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~  230 (381)
T COG3391         152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS  230 (381)
T ss_pred             EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence            44443322334 8999999999666665 78999999976543221 000 0111122234556666774443333 2  


Q ss_pred             CcEEEeeCCCCCCeeeeee-ecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          363 RTVRIWQRGSDGRFGCLAV-LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       363 g~i~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      +.+...|..++.   .... .......-..+...|++..    ..+.-+..+.+.+-|..+..
T Consensus       231 ~~v~~id~~~~~---v~~~~~~~~~~~~~~v~~~p~g~~----~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         231 NNVLKIDTATGN---VTATDLPVGSGAPRGVAVDPAGKA----AYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             ceEEEEeCCCce---EEEeccccccCCCCceeECCCCCE----EEEEecCCCeEEEEeCCCCc
Confidence            588888888765   2222 1111114566788888853    33332445677777766543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.41  E-value=0.24  Score=46.12  Aligned_cols=115  Identities=15%  Similarity=0.197  Sum_probs=69.6

Q ss_pred             cCCCcEEEEEeCC------CeEEEEECCCcEEEEECC-----CcceEEEeec-ccc----cEEEEEEecCCe-EEEEeCC
Q 013717          210 EHGDAVTGLAVNN------GLIYSVSWDKSLKIWRAS-----DLRCLESIKA-HED----AVNAVAVSAGGT-VYTGSAD  272 (437)
Q Consensus       210 ~~~~~v~~~~~~~------~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~-~~~----~v~~~~~~~~~~-l~~~~~d  272 (437)
                      +.-..|..+.|.|      ..+++.-....|.+|.+.     +.+.+..... ...    --..+.|+|... |++-...
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~  133 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR  133 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence            3445688999987      356777788899999875     2222222111 111    123467899888 5444444


Q ss_pred             CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-CCcEEEEECC
Q 013717          273 RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-DRSILVWDRE  327 (437)
Q Consensus       273 g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~  327 (437)
                      ..=.+++++.+...  ....+ ...+-|.|.+|.+||++|+++-. .=.-+|||-.
T Consensus       134 dvSV~~sV~~d~sr--VkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  134 DVSVLPSVHCDSSR--VKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             ceeEeeeeeeCCce--EEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            44455665544321  22223 45688999999999998876643 3345788854

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.41  E-value=0.00066  Score=64.97  Aligned_cols=230  Identities=17%  Similarity=0.221  Sum_probs=117.8

Q ss_pred             CeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCC--CcccccccccCccccceeee
Q 013717          117 HEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTP--TKHHKLKTTLPTVNDRLLRF  191 (437)
Q Consensus       117 d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~  191 (437)
                      +-|++-+....- + ...+  .++..+.|-.|.|....   +.  -.-|.+.+|+++-  |+....+..           
T Consensus       111 ~~vrvaN~~~sm-~-~~~l--~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v-----------  173 (1283)
T KOG1916|consen  111 NGVRVANQEPSM-R-HNEL--AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEV-----------  173 (1283)
T ss_pred             hhhhhccCcchh-H-HHHH--HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEE-----------
Confidence            356666665521 1 1111  14567888888886322   22  3346788998864  221111100           


Q ss_pred             cCCCCeeEEeeccceeeecCCCcEEEEEeCC-----CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeE
Q 013717          192 MLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-----GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTV  266 (437)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l  266 (437)
                                    +........+.-+.|.|     -++..+-.++.|++.+..+-.. ..+..|...+..+++...|.+
T Consensus       174 --------------~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~  238 (1283)
T KOG1916|consen  174 --------------TPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVL  238 (1283)
T ss_pred             --------------eecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchh
Confidence                          00011223334444544     5666667788888877654332 334457777777776554431


Q ss_pred             EEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECC-CCccceEEeeeecccc-c
Q 013717          267 YTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE-DSANHMVVTGALRGHG-K  344 (437)
Q Consensus       267 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~-~  344 (437)
                      ...+                                  .+|||+.|+.++.||.++.|.+. .++....+.+.++.|. .
T Consensus       239 ~l~~----------------------------------lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~  284 (1283)
T KOG1916|consen  239 KLAS----------------------------------LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKH  284 (1283)
T ss_pred             hhee----------------------------------eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCC
Confidence            1111                                  67888888888888888777653 2222333444455555 3


Q ss_pred             ceEEEEeeCC-----------EEEEEeC-CCcEEEeeCCCCCCeeee--------eeecCCCCCeeEEEEEccCCCCceE
Q 013717          345 AILCLINVAG-----------LLMSGSA-DRTVRIWQRGSDGRFGCL--------AVLEGHTKPVKSLTAVTEEGQNGVV  404 (437)
Q Consensus       345 ~i~~~~~~~~-----------~l~~~~~-dg~i~iwd~~~~~~~~~~--------~~~~~h~~~v~~l~~~~~~~~~~~~  404 (437)
                      +-.|+.++.+           ++++++. ...+++|....   +.|+        .....|.+.|+.+..+.-.-    .
T Consensus       285 p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~---w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~----~  357 (1283)
T KOG1916|consen  285 PRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP---WQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMT----T  357 (1283)
T ss_pred             CceeeeeccccccCCccceeEEEEecccCCcceeEeeccc---hhhhhhhcccceEeecCCCccccchhhhHHHH----H
Confidence            3344434322           4455544 45689997654   2344        11223433443322221110    1


Q ss_pred             EEEEecCCCcEEEEe
Q 013717          405 SVFSGSLDGEIRAWQ  419 (437)
Q Consensus       405 ~l~s~~~dg~i~iw~  419 (437)
                      .+++-+.||.|.+|.
T Consensus       358 ~~v~r~v~~~i~~~q  372 (1283)
T KOG1916|consen  358 RLVSRSVDGTIKIWQ  372 (1283)
T ss_pred             HHHHhhhHHHHHHhh
Confidence            245567788888885

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.33  E-value=1.3  Score=44.24  Aligned_cols=213  Identities=11%  Similarity=0.055  Sum_probs=115.1

Q ss_pred             CCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcE-----EEEEeCCCeEE
Q 013717          152 DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV-----TGLAVNNGLIY  226 (437)
Q Consensus       152 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~l~  226 (437)
                      ++.++.++.++.|.-.|..+++.+...............         ...+....+.......     ..-....+.++
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~---------~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~  264 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQH---------QTCRGVSYYDAPAAAAGPAAPAAPADCARRII  264 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccc---------ccccceEEecCCcccccccccccccccCCEEE
Confidence            667888888899999999988866554422111000000         0000000110000000     00112336888


Q ss_pred             EEECCCcEEEEECCCcceEEEeecccccE----------------EEEEEecCCeEEEEeC----------CCeEEEecC
Q 013717          227 SVSWDKSLKIWRASDLRCLESIKAHEDAV----------------NAVAVSAGGTVYTGSA----------DRKIRVWAK  280 (437)
Q Consensus       227 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v----------------~~~~~~~~~~l~~~~~----------dg~v~iwd~  280 (437)
                      .++.|+.|.-.|.++|+.+..+.. .+.|                ++--.--++.+++|+.          +|.|+-+|.
T Consensus       265 ~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da  343 (764)
T TIGR03074       265 LPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDV  343 (764)
T ss_pred             EecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEEC
Confidence            899999999999999998876631 1111                1111112556666643          688999999


Q ss_pred             CCCcccceeeEE-------------ee-CccccEEEEEEccCCCEEEEEe------------------CCCcEEEEECCC
Q 013717          281 PFNEKRHALIAT-------------LE-KHKSAVNALALSDDGTVLFSGA------------------CDRSILVWDRED  328 (437)
Q Consensus       281 ~~~~~~~~~~~~-------------~~-~~~~~i~~~~~~~~~~~l~~~~------------------~dg~i~i~d~~~  328 (437)
                      ++++..++.-..             +. +..+.-..++++++..+++.+.                  ..+.|.-.|.++
T Consensus       344 ~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~T  423 (764)
T TIGR03074       344 NTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATT  423 (764)
T ss_pred             CCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCC
Confidence            877654432210             00 0001112345555544444322                  135677778888


Q ss_pred             CccceEEeeeec------ccccce-EEEEe-eCC---EEEEEeCCCcEEEeeCCCCC
Q 013717          329 SANHMVVTGALR------GHGKAI-LCLIN-VAG---LLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       329 ~~~~~~~~~~~~------~~~~~i-~~~~~-~~~---~l~~~~~dg~i~iwd~~~~~  374 (437)
                      ++....+.....      .....+ ..+.. ++.   .++.++.+|.++++|.++++
T Consensus       424 Gk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~  480 (764)
T TIGR03074       424 GKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE  480 (764)
T ss_pred             CceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence            877665543210      001122 23333 443   89999999999999999988

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.30  E-value=0.21  Score=42.03  Aligned_cols=98  Identities=12%  Similarity=0.154  Sum_probs=67.3

Q ss_pred             EEEEeCC---CeEEEEECCCc-EEEEECCCcceEEEeeccccc--EEEEEEecCCeEEEEeC------CCeEEEecCCCC
Q 013717          216 TGLAVNN---GLIYSVSWDKS-LKIWRASDLRCLESIKAHEDA--VNAVAVSAGGTVYTGSA------DRKIRVWAKPFN  283 (437)
Q Consensus       216 ~~~~~~~---~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~l~~~~~------dg~v~iwd~~~~  283 (437)
                      ..++++|   .-++.+-.-|+ ..++|....+....+...++.  --.-.|+|||.++.++.      -|.|-|||.+. 
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~-  149 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE-  149 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc-
Confidence            3566766   45555555555 567898888777666533221  11235899999555554      37899999763 


Q ss_pred             cccceeeEEeeCccccEEEEEEccCCCEEEEEe
Q 013717          284 EKRHALIATLEKHKSAVNALALSDDGTVLFSGA  316 (437)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (437)
                        ....+.++..|.-....+.+.+||+.++.+.
T Consensus       150 --~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         150 --GFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             --ccceecccccCCcCcceeEEecCCcEEEEeC
Confidence              3356677778888889999999999998864

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.26  E-value=0.87  Score=41.32  Aligned_cols=274  Identities=12%  Similarity=0.100  Sum_probs=125.7

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCc-------------
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPT-------------  183 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------------  183 (437)
                      .+.|||+++++...+..      ....+....|+|++ .++--.++.|.+++..+++..+....-..             
T Consensus        24 ~y~i~d~~~~~~~~l~~------~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeE   97 (353)
T PF00930_consen   24 DYYIYDIETGEITPLTP------PPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEE   97 (353)
T ss_dssp             EEEEEETTTTEEEESS-------EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHH
T ss_pred             eEEEEecCCCceEECcC------CccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccc
Confidence            78889999965444433      25778899999877 44444578999999877743332221100             


Q ss_pred             --cccceeeec-CCCCeeEEeeccc---eee-----ecCCC---cEEEEEeCCCeEEEEECCC--cEEEEECCCcceEE-
Q 013717          184 --VNDRLLRFM-LPNSYVTVRRHKK---KLW-----IEHGD---AVTGLAVNNGLIYSVSWDK--SLKIWRASDLRCLE-  246 (437)
Q Consensus       184 --~~~~~~~~~-~~~~~~~~~~~~~---~~~-----~~~~~---~v~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~-  246 (437)
                        ......... ..+..++......   ..+     .....   .+..+.+-.    .|..+-  .+.++|+.+++... 
T Consensus        98 Ev~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk----~G~~np~v~l~v~~~~~~~~~~~  173 (353)
T PF00930_consen   98 EVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPK----AGDPNPRVSLFVVDLASGKTTEL  173 (353)
T ss_dssp             HTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--B----TTS---EEEEEEEESSSTCCCEE
T ss_pred             cccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCC----CCCcCCceEEEEEECCCCcEEEe
Confidence              001111222 2233333222111   111     01111   223333211    111222  36678888776532 


Q ss_pred             Ee----ecccccEEEEEEecCCe-EEEEeCC-----CeEEEecCCCCcccceeeEEeeCccccEEEEEEc-cCCC-EEEE
Q 013717          247 SI----KAHEDAVNAVAVSAGGT-VYTGSAD-----RKIRVWAKPFNEKRHALIATLEKHKSAVNALALS-DDGT-VLFS  314 (437)
Q Consensus       247 ~~----~~~~~~v~~~~~~~~~~-l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~-~l~~  314 (437)
                      ..    ......+..+.|.+++. ++..-.+     -.+.++|..++...........+--..-....|. +++. +|..
T Consensus       174 ~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~  253 (353)
T PF00930_consen  174 DPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWI  253 (353)
T ss_dssp             ---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEE
T ss_pred             eeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEE
Confidence            11    13456788999999988 6554432     2355666654332211111111111112244444 5554 5555


Q ss_pred             EeCCCcEEEEECCCCccceEEeeeecccccce---EEEEeeCC-EEEEEeCC--CcEEEe--eCCCCCCeeeeeeecCCC
Q 013717          315 GACDRSILVWDREDSANHMVVTGALRGHGKAI---LCLINVAG-LLMSGSAD--RTVRIW--QRGSDGRFGCLAVLEGHT  386 (437)
Q Consensus       315 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i---~~~~~~~~-~l~~~~~d--g~i~iw--d~~~~~~~~~~~~~~~h~  386 (437)
                      ...||.-+||-+........   .+....-.|   ..+...++ +++++..+  +.-.+|  ++..+.   .+..+....
T Consensus       254 s~~~G~~hly~~~~~~~~~~---~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~---~~~~LT~~~  327 (353)
T PF00930_consen  254 SERDGYRHLYLYDLDGGKPR---QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG---EPKCLTCED  327 (353)
T ss_dssp             EETTSSEEEEEEETTSSEEE---ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT---EEEESSTTS
T ss_pred             EEcCCCcEEEEEccccccee---ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC---CeEeccCCC
Confidence            55777655554433222211   222223333   34444444 44455543  344444  455122   344444333


Q ss_pred             CCeeEEEEEccCCCCceEEEEEecC
Q 013717          387 KPVKSLTAVTEEGQNGVVSVFSGSL  411 (437)
Q Consensus       387 ~~v~~l~~~~~~~~~~~~~l~s~~~  411 (437)
                      ..-..+.|+|++..    ++.+++.
T Consensus       328 ~~~~~~~~Spdg~y----~v~~~s~  348 (353)
T PF00930_consen  328 GDHYSASFSPDGKY----YVDTYSG  348 (353)
T ss_dssp             STTEEEEE-TTSSE----EEEEEES
T ss_pred             CCceEEEECCCCCE----EEEEEcC
Confidence            33368999999863    6666654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.26  E-value=0.76  Score=44.58  Aligned_cols=130  Identities=8%  Similarity=0.032  Sum_probs=67.8

Q ss_pred             CCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCC---CCcccceeeEEee-CccccEEEEEE
Q 013717          231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKP---FNEKRHALIATLE-KHKSAVNALAL  305 (437)
Q Consensus       231 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~---~~~~~~~~~~~~~-~~~~~i~~~~~  305 (437)
                      .+.+.+.++..++...   ...+.|..+.|+|||. ++... +|.|.+--+.   .+.........+. .....+..+.|
T Consensus       429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W  504 (591)
T PRK13616        429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW  504 (591)
T ss_pred             CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence            3455555665554433   2356799999999998 55544 5777773222   1211111111222 23334688999


Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEE
Q 013717          306 SDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVR  366 (437)
Q Consensus       306 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~  366 (437)
                      ..++.++ ++..++...+|.+.-........ .-......+..++-.+..++....+|.+.
T Consensus       505 ~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~~iyv~~~~g~~~  563 (591)
T PRK13616        505 RTGDSLV-VGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPSTVYVTDARAVLQ  563 (591)
T ss_pred             ecCCEEE-EEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCceEEEEcCCceEE
Confidence            9998855 55555544455443211111110 11112455666766666666666666443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.25  E-value=0.28  Score=44.37  Aligned_cols=104  Identities=16%  Similarity=0.206  Sum_probs=55.1

Q ss_pred             CCCcEEEEECCCcceEEEeeccc--ccEEEEEEec--CCe--EEEEeCCCeEEEecCCCCccccee--eEEeeC------
Q 013717          230 WDKSLKIWRASDLRCLESIKAHE--DAVNAVAVSA--GGT--VYTGSADRKIRVWAKPFNEKRHAL--IATLEK------  295 (437)
Q Consensus       230 ~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~--~~~--l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~~------  295 (437)
                      ...++.+||+.+.+.++++.-..  .....+.|..  +..  ++.+.....|..|--.. ...+..  +..+..      
T Consensus       220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~-~g~W~a~kVi~ip~~~v~~~  298 (461)
T PF05694_consen  220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDD-DGEWAAEKVIDIPAKKVEGW  298 (461)
T ss_dssp             S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-E-TTEEEEEEEEEE--EE--SS
T ss_pred             ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcC-CCCeeeeEEEECCCcccCcc
Confidence            35789999999999999987332  3455677754  333  55555566666653311 111221  112211      


Q ss_pred             -----------ccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCccceE
Q 013717          296 -----------HKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSANHMV  334 (437)
Q Consensus       296 -----------~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~  334 (437)
                                 -..-|+.|..|.|.++|...+ .+|.|+.||+.+......
T Consensus       299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl  349 (461)
T PF05694_consen  299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKL  349 (461)
T ss_dssp             ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EE
T ss_pred             cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcE
Confidence                       124579999999999887765 489999999998765543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.24  E-value=0.36  Score=44.62  Aligned_cols=134  Identities=15%  Similarity=0.130  Sum_probs=79.2

Q ss_pred             CcEEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEe--cCCCCcccceeeEEeeCccccEEEEEEcc
Q 013717          232 KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVW--AKPFNEKRHALIATLEKHKSAVNALALSD  307 (437)
Q Consensus       232 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iw--d~~~~~~~~~~~~~~~~~~~~i~~~~~~~  307 (437)
                      ..+.++|+.+++....+. ..+.-..-+|+|||+  +++...||...||  |+....     ...+....+.-..=.|+|
T Consensus       218 ~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-----~~~Lt~~~gi~~~Ps~sp  291 (425)
T COG0823         218 PRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-----LPRLTNGFGINTSPSWSP  291 (425)
T ss_pred             ceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-----ceecccCCccccCccCCC
Confidence            459999999887665554 444455678999998  5666677776665  554332     222333333333667999


Q ss_pred             CCCEEEEEeC-CCc--EEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeC-CCc--EEEeeCCCCC
Q 013717          308 DGTVLFSGAC-DRS--ILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSA-DRT--VRIWQRGSDG  374 (437)
Q Consensus       308 ~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~  374 (437)
                      ||++++-.+. .|.  |.+++.+.... ..+.  ..+-......+++++++|+..+. +|.  |.+.|+.++.
T Consensus       292 dG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT--~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         292 DGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLT--FSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CCCEEEEEeCCCCCcceEEECCCCCce-eEee--ccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            9998876543 444  56666655432 1121  22222335556677776665554 454  6667776655

>PHA02790 Kelch-like protein; Provisional

Probab=96.24  E-value=0.35  Score=45.85  Aligned_cols=184  Identities=9%  Similarity=0.041  Sum_probs=89.0

Q ss_pred             CCCeEEEEECCC-----cEEEEECCCcceEE--EeecccccEEEEEEecCCe-EEEEeCC--CeEEEecCCCCcccceee
Q 013717          221 NNGLIYSVSWDK-----SLKIWRASDLRCLE--SIKAHEDAVNAVAVSAGGT-VYTGSAD--RKIRVWAKPFNEKRHALI  290 (437)
Q Consensus       221 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~-l~~~~~d--g~v~iwd~~~~~~~~~~~  290 (437)
                      ....+++|+.++     .+..||..+.+...  .+....... +++ .-++. .+.|+.+  ..+..||...+  .+..+
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n--~W~~~  346 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDA--AWVNM  346 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCC--eEEEC
Confidence            335566776543     46678877654322  121111111 222 23677 6777654  35777876433  23333


Q ss_pred             EEeeCccccEEEEEEccCCCEEEEEeCCC---cEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEE
Q 013717          291 ATLEKHKSAVNALALSDDGTVLFSGACDR---SILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRI  367 (437)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~i  367 (437)
                      ..+.........+.  -+|+..+.|+.++   .+..||.++.+  +...................+.+.+.|   |.+.+
T Consensus       347 ~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~--W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~  419 (480)
T PHA02790        347 PSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQ--WQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEF  419 (480)
T ss_pred             CCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCE--EEeCCCCCCccccceEEEECCEEEEEC---CceEE
Confidence            32221111222222  2577777777553   46788887643  222222211111222334445455555   35778


Q ss_pred             eeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC-----CcEEEEeeccC
Q 013717          368 WQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD-----GEIRAWQVSVS  423 (437)
Q Consensus       368 wd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~  423 (437)
                      ||.++++ |..+..+....... +++... +     ++.+.||.+     ..|..||.++.
T Consensus       420 ydp~~~~-W~~~~~m~~~r~~~-~~~v~~-~-----~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        420 YCESSNT-WTLIDDPIYPRDNP-ELIIVD-N-----KLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             ecCCCCc-EeEcCCCCCCcccc-EEEEEC-C-----EEEEECCcCCCcccceEEEEECCCC
Confidence            9987654 55555443222222 233332 2     377777754     34667776654

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.11  E-value=0.85  Score=39.87  Aligned_cols=272  Identities=11%  Similarity=0.109  Sum_probs=115.4

Q ss_pred             cceeeccccccccccCCCceeEEecC-CCcceeeeec-Cc--cCCeEEEEeeCCEEEEEecCeEEEEeCCC-Cceeeeec
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSA-SHLCINSVQL-GH--KLPIGCIAVHHNFLYAASSHEINVYDRTG-TTWTSINT  134 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~-~~~~~~~~~~-~h--~~~V~~l~~~~~~l~s~~~d~v~vwd~~~-~~~~~~~~  134 (437)
                      ..+.|.......+ ++..+.|..-.- .........- ..  .-...++.|.++....++..-+.+...+. ..++.+..
T Consensus        20 ~dV~F~d~~~G~~-VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g~ll~T~DgG~tW~~v~l   98 (302)
T PF14870_consen   20 LDVAFVDPNHGWA-VGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPGLLLHTTDGGKTWERVPL   98 (302)
T ss_dssp             EEEEESSSS-EEE-EETTTEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETTEEEEESSTTSS-EE---
T ss_pred             EEEEEecCCEEEE-EecCCEEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCceEEEecCCCCCcEEeec
Confidence            4566664444444 344555543322 3333333322 11  23466788884333334444333333333 34555432


Q ss_pred             cccCCCCcccEEEEEE-eCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717          135 FNDNDSSSGSVKSVTF-CDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD  213 (437)
Q Consensus       135 ~~~~~~h~~~v~~l~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (437)
                      -.   .-.+....+.. .++....++..|.|.. ..+.++....+.                             ..-..
T Consensus        99 ~~---~lpgs~~~i~~l~~~~~~l~~~~G~iy~-T~DgG~tW~~~~-----------------------------~~~~g  145 (302)
T PF14870_consen   99 SS---KLPGSPFGITALGDGSAELAGDRGAIYR-TTDGGKTWQAVV-----------------------------SETSG  145 (302)
T ss_dssp             -T---T-SS-EEEEEEEETTEEEEEETT--EEE-ESSTTSSEEEEE------------------------------S---
T ss_pred             CC---CCCCCeeEEEEcCCCcEEEEcCCCcEEE-eCCCCCCeeEcc-----------------------------cCCcc
Confidence            11   11223333443 3555444455555432 223333222211                             12345


Q ss_pred             cEEEEEeCC-CeEEEEECCCcE-EEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCccccee-e
Q 013717          214 AVTGLAVNN-GLIYSVSWDKSL-KIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHAL-I  290 (437)
Q Consensus       214 ~v~~~~~~~-~~l~~~~~dg~i-~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~  290 (437)
                      .+..+...+ ..+++.+..|.+ .-||--...-...-+.....|.+|.|.|++.|......|.|+.=+...+...+.. +
T Consensus       146 s~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~  225 (302)
T PF14870_consen  146 SINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPI  225 (302)
T ss_dssp             -EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B
T ss_pred             eeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCcccccccc
Confidence            677777666 344444455554 5677433222222233567899999999998766779999988762222221111 1


Q ss_pred             EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee-CCEEEEEeCCCcEEEe
Q 013717          291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV-AGLLMSGSADRTVRIW  368 (437)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~dg~i~iw  368 (437)
                      .......-.+..++|.+++...++|+ .|.+ +...+.++. .........-......+.|. ++.-++-+.+|.|--|
T Consensus       226 ~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGkt-W~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  226 IPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKT-WQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             -TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS--EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred             CCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCcc-ceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence            11112233589999999877776664 5544 445555543 32222222223445566654 4566667788877554

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.07  E-value=0.035  Score=44.94  Aligned_cols=101  Identities=14%  Similarity=0.188  Sum_probs=63.5

Q ss_pred             CCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEE
Q 013717          152 DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSV  228 (437)
Q Consensus       152 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~  228 (437)
                      ...++.|+.+|.|.+|+...........                             ..-...|.++....   .+..++
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~-----------------------------~s~~e~i~~~Ip~~~~~~~~c~~  120 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV-----------------------------CSGEESIDLGIPNGRDSSLGCVG  120 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhh-----------------------------hcccccceeccccccccceeEEe
Confidence            4459999999999999987322111111                             01222333333332   488899


Q ss_pred             ECCCcEEEEECCCcceEEEeeccc-ccEEEEEEecCCe-EEEE--eCCCeEEEecCC
Q 013717          229 SWDKSLKIWRASDLRCLESIKAHE-DAVNAVAVSAGGT-VYTG--SADRKIRVWAKP  281 (437)
Q Consensus       229 ~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~-l~~~--~~dg~v~iwd~~  281 (437)
                      +.||.|+.|++.-.+.+.....|. .++..+..+..++ ++.+  +.|..++.|++.
T Consensus       121 ~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  121 AQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             ccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            999999999998888777666565 4444444444444 5555  667777777664

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.02  E-value=1.3  Score=42.82  Aligned_cols=199  Identities=11%  Similarity=0.034  Sum_probs=99.1

Q ss_pred             cCCeEEEEeeCCEEEE-EecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcc
Q 013717           98 KLPIGCIAVHHNFLYA-ASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKH  174 (437)
Q Consensus        98 ~~~V~~l~~~~~~l~s-~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~  174 (437)
                      -+...++..+...+.. .+.- .|+||+..+.   .+..+.   -..+.+..+.|+.+. |+....+|++++|++-....
T Consensus        43 ~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG~---lL~~~~---w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~i  116 (829)
T KOG2280|consen   43 FGGPIAVTRSPSKLVPLYSARPYIRIFNISGQ---LLGRIL---WKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFI  116 (829)
T ss_pred             cCCceEEEecccccccccccceeEEEEecccc---chHHHH---hcCCCeeeecccCCceEEEEeccceEEEeecchhhh
Confidence            3444455555322221 1334 7999998874   222221   123388899999776 99999999999999874321


Q ss_pred             cccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEeec---c
Q 013717          175 HKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKA---H  251 (437)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~  251 (437)
                      .......                           ......|..+.+..+-++.-..+|.+.+-+-.....+..++.   .
T Consensus       117 e~~svg~---------------------------e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~  169 (829)
T KOG2280|consen  117 ESNSVGF---------------------------ESQMSDIVECRFFHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYN  169 (829)
T ss_pred             ccccccc---------------------------ccccCceeEEEEecCceEEEecCCcEEEEcCCCcchhhhCCCCCCc
Confidence            1100000                           012223444444334444445555555544322222233321   1


Q ss_pred             cccEEEEEEecCCeEEEEeCCCe----EEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECC
Q 013717          252 EDAVNAVAVSAGGTVYTGSADRK----IRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE  327 (437)
Q Consensus       252 ~~~v~~~~~~~~~~l~~~~~dg~----v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (437)
                      .-.-.|-...+++.-.++..+-.    ..++-.....   .....+....+.+..+..||+.++|+--...|.|.+-+.+
T Consensus       170 ~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~---~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D  246 (829)
T KOG2280|consen  170 ELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESR---VQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSID  246 (829)
T ss_pred             cCCCcceeEecCCCcceeEEeechhhhhcccceeccc---ccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecc
Confidence            11112222223322111110100    1111111111   1112222234678889999999999999999999999887


Q ss_pred             CCccc
Q 013717          328 DSANH  332 (437)
Q Consensus       328 ~~~~~  332 (437)
                      ..+..
T Consensus       247 ~~~~l  251 (829)
T KOG2280|consen  247 LSQIL  251 (829)
T ss_pred             hhhhh
Confidence            55433

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.99  E-value=0.026  Score=33.41  Aligned_cols=32  Identities=16%  Similarity=0.264  Sum_probs=28.3

Q ss_pred             CCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717          386 TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       386 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                      ...|..++|+|..+     +|+.+..||.|.+++++.
T Consensus        11 ~~~v~~~~w~P~md-----LiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD-----LIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CCcEEEEEECCCCC-----EEEEEECCCeEEEEECCC
Confidence            45699999999986     899999999999999943

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.89  E-value=1.4  Score=40.44  Aligned_cols=78  Identities=14%  Similarity=0.150  Sum_probs=50.5

Q ss_pred             eeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEE----Eee-------------CC-
Q 013717          293 LEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCL----INV-------------AG-  354 (437)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~----~~~-------------~~-  354 (437)
                      +......+.++..+|++++.++.+.=|.|.++|+..+.....    ++|....-..+    ...             .. 
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrm----WKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~  378 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRM----WKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF  378 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhh----hccCccceEEEEEeecccccccccccccCCCCcc
Confidence            334455688999999999999998889999999987643222    22222211111    110             01 


Q ss_pred             ---EEEEEeCCCcEEEeeCCCCC
Q 013717          355 ---LLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       355 ---~l~~~~~dg~i~iwd~~~~~  374 (437)
                         +++-+-.-|.|-||.++.+.
T Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~  401 (415)
T PF14655_consen  379 ALFLVIYAPRRGILEVWSMRQGP  401 (415)
T ss_pred             eEEEEEEeccCCeEEEEecCCCC
Confidence               44556667889999988876

>PHA02790 Kelch-like protein; Provisional

Probab=95.82  E-value=1.7  Score=41.37  Aligned_cols=181  Identities=11%  Similarity=0.068  Sum_probs=89.6

Q ss_pred             CCEEEEEecC------eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecC--CeEEEEeCCCCcccccc
Q 013717          108 HNFLYAASSH------EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQD--CKIRVWQLTPTKHHKLK  178 (437)
Q Consensus       108 ~~~l~s~~~d------~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~d--g~i~iwd~~~~~~~~~~  178 (437)
                      +..++.|+.+      .+..||..++.|..+..+....   .. .+++..++. .+.||.+  ..+..||..+++.. ..
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r---~~-~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~-~~  346 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPR---LY-ASGVPANNKLYVVGGLPNPTSVERWFHGDAAWV-NM  346 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchh---hc-ceEEEECCEEEEECCcCCCCceEEEECCCCeEE-EC
Confidence            4555666532      5778999888787777653211   11 233344566 5666653  34667776544321 11


Q ss_pred             cccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCC---cEEEEECCCcceEEE--eecccc
Q 013717          179 TTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDK---SLKIWRASDLRCLES--IKAHED  253 (437)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~--~~~~~~  253 (437)
                      ..++                           ............+...+.|+.++   .+..||..+.+-...  +.....
T Consensus       347 ~~l~---------------------------~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~  399 (480)
T PHA02790        347 PSLL---------------------------KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHY  399 (480)
T ss_pred             CCCC---------------------------CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccc
Confidence            1111                           01112233444556666676543   467788766543221  111111


Q ss_pred             cEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC-----CcEEEEECC
Q 013717          254 AVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD-----RSILVWDRE  327 (437)
Q Consensus       254 ~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~  327 (437)
                      .. +++ .-+++ .+.|   |.+.+||..++  .+..+..+.........+.+  +|+..+.|+.+     ..+.+||..
T Consensus       400 ~~-~~~-~~~~~IYv~G---G~~e~ydp~~~--~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~  470 (480)
T PHA02790        400 KS-CAL-VFGRRLFLVG---RNAEFYCESSN--TWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNR  470 (480)
T ss_pred             cc-eEE-EECCEEEEEC---CceEEecCCCC--cEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECC
Confidence            11 222 33667 4555   45778887543  44444333222222222222  56777777754     346677766


Q ss_pred             CC
Q 013717          328 DS  329 (437)
Q Consensus       328 ~~  329 (437)
                      +.
T Consensus       471 ~~  472 (480)
T PHA02790        471 TY  472 (480)
T ss_pred             CC
Confidence            53

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.69  E-value=1.2  Score=38.07  Aligned_cols=162  Identities=14%  Similarity=0.126  Sum_probs=104.3

Q ss_pred             cCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeec-ccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcc
Q 013717          210 EHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKA-HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEK  285 (437)
Q Consensus       210 ~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~  285 (437)
                      +-...+.++.|+|  +.|++......-.++=..+|+.+.++.- .-.....+.+..+|. .++--.++.+.++.+..+..
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence            3445599999999  7888888777777777788999888761 123345677877787 44445578888887654432


Q ss_pred             ccee------eEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccc-------ccceEEEEee
Q 013717          286 RHAL------IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH-------GKAILCLINV  352 (437)
Q Consensus       286 ~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------~~~i~~~~~~  352 (437)
                      ....      +......+.....++|+|..+.|+.+=+-.-+.||.+........... ...+       -..+.++.++
T Consensus       163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~-~~~~~~~~~~f~~DvSgl~~~  241 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHA-SLDPTADRDLFVLDVSGLEFN  241 (316)
T ss_pred             EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccc-ccCcccccceEeeccccceec
Confidence            1111      111122255678999999999999888888888888764332211111 1111       1234555666


Q ss_pred             C---CEEEEEeCCCcEEEeeCCC
Q 013717          353 A---GLLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       353 ~---~~l~~~~~dg~i~iwd~~~  372 (437)
                      .   .+|+-+.+++.+.-.|...
T Consensus       242 ~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         242 AITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             CCCCcEEEEecCCceEEEEecCC
Confidence            3   3777788888888888775

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.65  E-value=0.99  Score=43.55  Aligned_cols=122  Identities=12%  Similarity=0.198  Sum_probs=75.4

Q ss_pred             eeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee----CCEEEEEeCCCc
Q 013717          289 LIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV----AGLLMSGSADRT  364 (437)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~dg~  364 (437)
                      ....+...-..+.-+.-+.-++.-++-+....+.|||.+.+.  ......+ .....|..++|.    ++.+++.+..+.
T Consensus        21 ~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~--lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~   97 (631)
T PF12234_consen   21 LTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV--LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHH   97 (631)
T ss_pred             EEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcE--EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcE
Confidence            334444444455556666656655555556689999998765  2333333 346777777765    447777888888


Q ss_pred             EEEeeCC------CCCCeeeeeee--cCCC-CCeeEEEEEccCCCCceEEEEEecCCCcEEEEee
Q 013717          365 VRIWQRG------SDGRFGCLAVL--EGHT-KPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV  420 (437)
Q Consensus       365 i~iwd~~------~~~~~~~~~~~--~~h~-~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~  420 (437)
                      |.+|--.      .+..+..+..+  ..|+ .+|.+..|.+++      .|+.|+ ++.+.|++=
T Consensus        98 v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G------~LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen   98 VLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG------TLVVGS-GNQLFVFDK  155 (631)
T ss_pred             EEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC------eEEEEe-CCEEEEECC
Confidence            9888531      12223344333  3444 589999999998      455444 347888764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.63  E-value=1.2  Score=37.79  Aligned_cols=204  Identities=10%  Similarity=0.123  Sum_probs=101.3

Q ss_pred             eec-CccCCeEEEEee--CCEEEEEecC--eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEe-cCCeEE
Q 013717           93 VQL-GHKLPIGCIAVH--HNFLYAASSH--EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAH-QDCKIR  165 (437)
Q Consensus        93 ~~~-~h~~~V~~l~~~--~~~l~s~~~d--~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~-~dg~i~  165 (437)
                      +.+ +-...+..|+|+  .+.|++..+.  .|..++.+.. ......+   .+ .+....|++.++. ++... .++.+.
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~-vlr~i~l---~g-~~D~EgI~y~g~~~~vl~~Er~~~L~   89 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGK-VLRRIPL---DG-FGDYEGITYLGNGRYVLSEERDQRLY   89 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE----SS--SSEEEEEE-STTEEEEEETTTTEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCC-EEEEEeC---CC-CCCceeEEEECCCEEEEEEcCCCcEE
Confidence            344 666679999999  4555555544  8888887642 3222223   22 4678889988554 44444 589999


Q ss_pred             EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCC--
Q 013717          166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASD--  241 (437)
Q Consensus       166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~--  241 (437)
                      +.++.............                   .........+...+-.++|++  +.|+.+-+..-..+|.+..  
T Consensus        90 ~~~~~~~~~~~~~~~~~-------------------~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~  150 (248)
T PF06977_consen   90 IFTIDDDTTSLDRADVQ-------------------KISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP  150 (248)
T ss_dssp             EEEE----TT--EEEEE-------------------EEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT
T ss_pred             EEEEeccccccchhhce-------------------EEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc
Confidence            99885432111110000                   000000013556789999988  7777777777777777653  


Q ss_pred             -cceEEEee--------cccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeC-c------cccEEEE
Q 013717          242 -LRCLESIK--------AHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEK-H------KSAVNAL  303 (437)
Q Consensus       242 -~~~~~~~~--------~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~------~~~i~~~  303 (437)
                       ...+....        .....+.+++++|...  ++....+..|..+|.....   .....+.. .      -.+.-.|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~---~~~~~L~~g~~gl~~~~~QpEGI  227 (248)
T PF06977_consen  151 GGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRV---VSSLSLDRGFHGLSKDIPQPEGI  227 (248)
T ss_dssp             -SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--E---EEEEE-STTGGG-SS---SEEEE
T ss_pred             CccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCE---EEEEEeCCcccCcccccCCccEE
Confidence             21221111        1334588999998654  6677778889999854221   11122222 1      1357899


Q ss_pred             EEccCCCEEEEEeCCCcEEEE
Q 013717          304 ALSDDGTVLFSGACDRSILVW  324 (437)
Q Consensus       304 ~~~~~~~~l~~~~~dg~i~i~  324 (437)
                      +|.++|++.++. +-+..++|
T Consensus       228 a~d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  228 AFDPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             EE-TT--EEEEE-TTTEEEEE
T ss_pred             EECCCCCEEEEc-CCceEEEe
Confidence            999999665554 55555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.56  E-value=0.73  Score=44.90  Aligned_cols=111  Identities=8%  Similarity=0.167  Sum_probs=73.6

Q ss_pred             cEEEEEeCC----CeEEEEECCCcEEEEECCCc-----------c---------eEEEeecccccEEEEEEe--cCCe-E
Q 013717          214 AVTGLAVNN----GLIYSVSWDKSLKIWRASDL-----------R---------CLESIKAHEDAVNAVAVS--AGGT-V  266 (437)
Q Consensus       214 ~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~-----------~---------~~~~~~~~~~~v~~~~~~--~~~~-l  266 (437)
                      .|+-|....    ..|+.+..||.|.+|.+++-           +         +...+ .....++.++++  ...+ |
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEE
Confidence            456555543    88999999999999976320           0         11112 234578999998  6666 7


Q ss_pred             EEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC---C---EEEEEeCCCcEEEEEC
Q 013717          267 YTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG---T---VLFSGACDRSILVWDR  326 (437)
Q Consensus       267 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~---~l~~~~~dg~i~i~d~  326 (437)
                      |+++....|.||-............ -..+...|.+|.|-++.   .   .+++++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEecccccccccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            7788888898886543221111111 11256678899998743   2   7888999999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.49  E-value=2.2  Score=39.79  Aligned_cols=184  Identities=9%  Similarity=0.046  Sum_probs=86.6

Q ss_pred             cEEEEECCCcceE--EEeecccc-c-EEEEEEecCCe-EE-EEeCC---CeEEEecCCCCcccceeeEEeeCccccE-EE
Q 013717          233 SLKIWRASDLRCL--ESIKAHED-A-VNAVAVSAGGT-VY-TGSAD---RKIRVWAKPFNEKRHALIATLEKHKSAV-NA  302 (437)
Q Consensus       233 ~i~iwd~~~~~~~--~~~~~~~~-~-v~~~~~~~~~~-l~-~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~i-~~  302 (437)
                      .|+.|.+.+....  ..+..... . ...+..+++++ ++ .....   ..+.+.|+............+......+ ..
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~  282 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY  282 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence            3788887765432  33333222 2 56788899998 33 33332   3577777764310111122222223333 33


Q ss_pred             EEEccCCCEEEEEe---CCCcEEEEECCCCccceEEeeeecccc--cceEEEEeeCCEEEE-EeCCC--cEEEeeCCCCC
Q 013717          303 LALSDDGTVLFSGA---CDRSILVWDREDSANHMVVTGALRGHG--KAILCLINVAGLLMS-GSADR--TVRIWQRGSDG  374 (437)
Q Consensus       303 ~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~l~~-~~~dg--~i~iwd~~~~~  374 (437)
                      +... .+.+++...   .++.|...++......... ..+..+.  ..+..+...+++|+. .-.++  .|+++++..+.
T Consensus       283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~-~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~  360 (414)
T PF02897_consen  283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWW-TVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGK  360 (414)
T ss_dssp             EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEE-EEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred             EEcc-CCEEEEeeCCCCCCcEEEEecccccccccce-eEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCc
Confidence            4333 444444332   3567888888876531111 1122233  356777777775444 44444  58889988222


Q ss_pred             CeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecC---CCcEEEEeeccCC
Q 013717          375 RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSL---DGEIRAWQVSVSC  424 (437)
Q Consensus       375 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~---dg~i~iw~~~~~~  424 (437)
                        ........-.+.|..+...++.+.    +.++.+.   =+++..||+.+++
T Consensus       361 --~~~~~~~p~~g~v~~~~~~~~~~~----~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  361 --ESREIPLPEAGSVSGVSGDFDSDE----LRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             --EEEEEESSSSSEEEEEES-TT-SE----EEEEEEETTEEEEEEEEETTTTC
T ss_pred             --EEeeecCCcceEEeccCCCCCCCE----EEEEEeCCCCCCEEEEEECCCCC
Confidence              122222222344555554454442    4444433   2467777777764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.42  E-value=3.3  Score=41.51  Aligned_cols=195  Identities=11%  Similarity=0.117  Sum_probs=110.9

Q ss_pred             CccCCeEEEEee---CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEE-Ee-CCeEEEEecCCeEEEEeCC
Q 013717           96 GHKLPIGCIAVH---HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVT-FC-DGKIFTAHQDCKIRVWQLT  170 (437)
Q Consensus        96 ~h~~~V~~l~~~---~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~-~~-~~~l~s~~~dg~i~iwd~~  170 (437)
                      +.......++.+   ++.|+-...+.||+++-..    ....+.    -.+.++... +. ...++.++.++.+...++.
T Consensus       446 gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~~----~~~~W~----~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~  517 (1096)
T KOG1897|consen  446 GFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSAG----LRSEWR----PPGKITIGVVSANASQVVVAGGGLALFYLEIE  517 (1096)
T ss_pred             cccccCceEEEEccCCceEEEEecccEEEEcchh----hhhccc----CCCceEEEEEeecceEEEEecCccEEEEEEee
Confidence            555556666666   7777777777899998763    122221    122233322 22 3347777777878777777


Q ss_pred             CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-----C---eEEEEECCCcEEEEEC-CC
Q 013717          171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-----G---LIYSVSWDKSLKIWRA-SD  241 (437)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~---~l~~~~~dg~i~iwd~-~~  241 (437)
                      .+.......                             ...+..|.|+.++|     +   +++.|..+..+.+.-. .+
T Consensus       518 ~~~l~e~~~-----------------------------~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd  568 (1096)
T KOG1897|consen  518 DGGLREVSH-----------------------------KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD  568 (1096)
T ss_pred             ccceeeeee-----------------------------heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC
Confidence            654222111                             12456888998875     3   8888888776655433 23


Q ss_pred             cceEEEee----cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe
Q 013717          242 LRCLESIK----AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA  316 (437)
Q Consensus       242 ~~~~~~~~----~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (437)
                      ...+....    .-...|.-..+-.|.. |.++..||.+..|-+..........+...-...++.--.|+..++.-+-+.
T Consensus       569 ~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~  648 (1096)
T KOG1897|consen  569 LILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFAL  648 (1096)
T ss_pred             cceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEe
Confidence            32222211    1233455555555455 999999999998866544433222232223345666566666555444444


Q ss_pred             CCCcEEEEECC
Q 013717          317 CDRSILVWDRE  327 (437)
Q Consensus       317 ~dg~i~i~d~~  327 (437)
                      .|.-..+|.-+
T Consensus       649 sdrP~viY~~n  659 (1096)
T KOG1897|consen  649 SDRPTVIYSSN  659 (1096)
T ss_pred             CCCCEEEEecC
Confidence            56666676654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.40  E-value=0.39  Score=46.70  Aligned_cols=121  Identities=14%  Similarity=0.152  Sum_probs=75.3

Q ss_pred             EEEEEEcc--CCCEEEEEeCCCcEEEEECCCC-----------cc---c--eEEeeeecccccceEEEEee--C--CEEE
Q 013717          300 VNALALSD--DGTVLFSGACDRSILVWDREDS-----------AN---H--MVVTGALRGHGKAILCLINV--A--GLLM  357 (437)
Q Consensus       300 i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~-----------~~---~--~~~~~~~~~~~~~i~~~~~~--~--~~l~  357 (437)
                      |+.|....  +...|+++..||.|.+|.++.-           ..   .  ..... .......+++++..  .  .+||
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f-~~~v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFF-HLRVGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCe-EeecCCceeEEEEEecCcceEEE
Confidence            55554433  4568889999999999976420           00   0  00000 01123456777776  3  3888


Q ss_pred             EEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCc-eEEEEEecCCCcEEEEeec
Q 013717          358 SGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNG-VVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       358 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~-~~~l~s~~~dg~i~iw~~~  421 (437)
                      +++....|.||-............-..|...|-+|+|.++...+. ...|++++-.|.+.+|++.
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            888888888886654221111111223677899999998874322 2478899999999999983

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=95.18  E-value=2.3  Score=38.42  Aligned_cols=63  Identities=13%  Similarity=0.141  Sum_probs=31.6

Q ss_pred             CCEEEEEecC--eEEEEeCC--CCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecC-----------CeEEEEeCCC
Q 013717          108 HNFLYAASSH--EINVYDRT--GTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQD-----------CKIRVWQLTP  171 (437)
Q Consensus       108 ~~~l~s~~~d--~v~vwd~~--~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~d-----------g~i~iwd~~~  171 (437)
                      +...+.|+..  .+.++|++  ..+|..+..+..   ....-.+++..++. .+.|+.+           ..+..||..+
T Consensus        18 ~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~---~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~   94 (346)
T TIGR03547        18 DKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPG---GPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKK   94 (346)
T ss_pred             CEEEEEccccCCeeEEEECCCCCCCceECCCCCC---CCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCC
Confidence            4444445543  77778863  345666555421   11111233444555 5566542           2466677766


Q ss_pred             Cc
Q 013717          172 TK  173 (437)
Q Consensus       172 ~~  173 (437)
                      .+
T Consensus        95 ~~   96 (346)
T TIGR03547        95 NS   96 (346)
T ss_pred             CE
Confidence            54

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.14  E-value=1.8  Score=44.59  Aligned_cols=76  Identities=9%  Similarity=0.288  Sum_probs=53.8

Q ss_pred             ccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccc--------------------eeeEEee-CccccEEEEEEccCC
Q 013717          251 HEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRH--------------------ALIATLE-KHKSAVNALALSDDG  309 (437)
Q Consensus       251 ~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~--------------------~~~~~~~-~~~~~i~~~~~~~~~  309 (437)
                      ..-.|+|+....+|+++.++.||  .+|.+.......                    ..+..+. .+..+|..+.....-
T Consensus       177 dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR  254 (1311)
T KOG1900|consen  177 DGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR  254 (1311)
T ss_pred             CCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence            45678999988899988888888  455432111000                    0011222 456799999999888


Q ss_pred             CEEEEEeCCCcEEEEECCC
Q 013717          310 TVLFSGACDRSILVWDRED  328 (437)
Q Consensus       310 ~~l~~~~~dg~i~i~d~~~  328 (437)
                      +.+.+-++.|+|.+||+..
T Consensus       255 ~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  255 NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ceeeeeccCceEEEEEccC
Confidence            8999999999999999976

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.11  E-value=1.9  Score=36.89  Aligned_cols=166  Identities=10%  Similarity=0.043  Sum_probs=99.9

Q ss_pred             cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC-ccccEEEEEEccCCCEEEEEeCCCcEEEEECC
Q 013717          250 AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK-HKSAVNALALSDDGTVLFSGACDRSILVWDRE  327 (437)
Q Consensus       250 ~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (437)
                      +....+.++.|+|+.+ |++......-.++    -...+..++++.- .-.....+.+..+|++.++--.++.+.++.+.
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVE----lt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd  158 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVE----LTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD  158 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEE----EecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence            4455699999999998 7666666665555    2333345555432 12344567788788888887788999988877


Q ss_pred             CCccceEEee------eecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCC-------CCeeEE
Q 013717          328 DSANHMVVTG------ALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHT-------KPVKSL  392 (437)
Q Consensus       328 ~~~~~~~~~~------~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-------~~v~~l  392 (437)
                      ..........      .........-.+++++.  .|+.+-+-.-+.||.+........+.....+.       ..|.++
T Consensus       159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl  238 (316)
T COG3204         159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL  238 (316)
T ss_pred             CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence            6533222111      11111344456677654  77777777778888776433211222222222       246777


Q ss_pred             EEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          393 TAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       393 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      .|.+..+.    +|+-+.+++.+.--+....
T Consensus       239 ~~~~~~~~----LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         239 EFNAITNS----LLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             eecCCCCc----EEEEecCCceEEEEecCCC
Confidence            77766554    7777777777766665544

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.09  E-value=2.7  Score=38.67  Aligned_cols=280  Identities=11%  Similarity=0.096  Sum_probs=147.8

Q ss_pred             CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe---C---CeEEEEecCCeEEEEeCCCCcccccccc
Q 013717          108 HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC---D---GKIFTAHQDCKIRVWQLTPTKHHKLKTT  180 (437)
Q Consensus       108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~  180 (437)
                      .+.++.|+.. .++||+...+..+....+ ....-..+|..|..-   +   +..++.-.-..+.+|.+.......    
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~ll-lE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~----  111 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLL-LETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTV----  111 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEE-EEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCc----
Confidence            4689999988 999999976433221111 112345788888753   1   224555667788888873221000    


Q ss_pred             cCccccceeeecCCCCeeEEeeccceeeecCCC--cEEEEEe---CC----CeEEEEECCCcEEEEECCCcceEEEeecc
Q 013717          181 LPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD--AVTGLAV---NN----GLIYSVSWDKSLKIWRASDLRCLESIKAH  251 (437)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~---~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  251 (437)
                                  ..+....+     .....|.-  ....+++   ..    .++.+=+-||.+.+|+-+.......+.. 
T Consensus       112 ------------~~g~~~~L-----~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-  173 (418)
T PF14727_consen  112 ------------EHGNQYQL-----ELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-  173 (418)
T ss_pred             ------------ccCcEEEE-----EEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence                        00001111     11112221  1222222   21    7888889999999999776554444432 


Q ss_pred             cccEEEEEEecCCe-EEEEeCCCeEEEecCCC---C----------------cccceeeEEeeCccccEEE---EEEccC
Q 013717          252 EDAVNAVAVSAGGT-VYTGSADRKIRVWAKPF---N----------------EKRHALIATLEKHKSAVNA---LALSDD  308 (437)
Q Consensus       252 ~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~---~----------------~~~~~~~~~~~~~~~~i~~---~~~~~~  308 (437)
                      -----.+.|.+... |++++.+..|..|....   .                .+....-.++. -...+..   +.++..
T Consensus       174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~  252 (418)
T PF14727_consen  174 FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSS  252 (418)
T ss_pred             CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCC
Confidence            11223456776666 99999999999985421   0                00011111111 1223333   333333


Q ss_pred             CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEe----eCC---EEEEEeCCCcEEEeeCCCCCCeeeeee
Q 013717          309 GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLIN----VAG---LLMSGSADRTVRIWQRGSDGRFGCLAV  381 (437)
Q Consensus       309 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~  381 (437)
                      ...+++-+ ...+.+.+-. |  ...+...+.........+..    .++   .++.++.++++.||.-.+     ++..
T Consensus       253 ~~~IvvLg-er~Lf~l~~~-G--~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~-----L~Ws  323 (418)
T PF14727_consen  253 ESDIVVLG-ERSLFCLKDN-G--SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT-----LVWS  323 (418)
T ss_pred             CceEEEEe-cceEEEEcCC-C--eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe-----EEEe
Confidence            33444433 3456666643 2  22233334333322222222    222   588999999999997554     4444


Q ss_pred             ecCCCCCeeEEEEEc--cCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          382 LEGHTKPVKSLTAVT--EEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       382 ~~~h~~~v~~l~~~~--~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      .+....+| +|....  +-+.    +|++-+.+|.+.+-=+-+..+
T Consensus       324 A~l~~~PV-al~v~~~~~~~G----~IV~Ls~~G~L~v~YLGTdPs  364 (418)
T PF14727_consen  324 AQLPHVPV-ALSVANFNGLKG----LIVSLSDEGQLSVSYLGTDPS  364 (418)
T ss_pred             cCCCCCCE-EEEecccCCCCc----eEEEEcCCCcEEEEEeCCCCc
Confidence            44334444 444332  2222    899999999999988877654

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.05  E-value=1.6  Score=35.86  Aligned_cols=149  Identities=11%  Similarity=0.117  Sum_probs=86.2

Q ss_pred             cccEEEEEEecCCeEEEEeCC----------CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEE-EeCCCc
Q 013717          252 EDAVNAVAVSAGGTVYTGSAD----------RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFS-GACDRS  320 (437)
Q Consensus       252 ~~~v~~~~~~~~~~l~~~~~d----------g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~  320 (437)
                      +...+.-..+|+|++..|.+.          |.++.|-....      +..+...-.--+.++|+.+.+.+.. -+.+-.
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~------v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~  181 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ------VELIWNCVGISNGLAWDSDAKKFYYIDSLNYE  181 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC------ceeeehhccCCccccccccCcEEEEEccCceE
Confidence            445666677899997666542          34444432110      1111122233467888887775554 455667


Q ss_pred             EEEEE--CCCCcc-----ceEEee--eecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeE
Q 013717          321 ILVWD--REDSAN-----HMVVTG--ALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKS  391 (437)
Q Consensus       321 i~i~d--~~~~~~-----~~~~~~--~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~  391 (437)
                      |.-||  ..++..     ...+..  .+......-+++.-.|++.++.-..++|...|..+++   .+.++.-....|++
T Consensus       182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK---~L~eiklPt~qits  258 (310)
T KOG4499|consen  182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGK---ILLEIKLPTPQITS  258 (310)
T ss_pred             EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCc---EEEEEEcCCCceEE
Confidence            76777  433321     111111  0111111125666677788888888999999999988   66666666889999


Q ss_pred             EEEEccCCCCceEEEEEecCC
Q 013717          392 LTAVTEEGQNGVVSVFSGSLD  412 (437)
Q Consensus       392 l~~~~~~~~~~~~~l~s~~~d  412 (437)
                      ++|-...-.   .+.+|+..+
T Consensus       259 ccFgGkn~d---~~yvT~aa~  276 (310)
T KOG4499|consen  259 CCFGGKNLD---ILYVTTAAK  276 (310)
T ss_pred             EEecCCCcc---EEEEEehhc
Confidence            999754211   355555543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.90  E-value=4.6  Score=40.26  Aligned_cols=79  Identities=11%  Similarity=0.150  Sum_probs=51.2

Q ss_pred             ccEEEEEEecCCe-EEEEeCCCeEEEecCCCC--c-------ccceeeEEe--------eCccccEEEEEEccC---CCE
Q 013717          253 DAVNAVAVSAGGT-VYTGSADRKIRVWAKPFN--E-------KRHALIATL--------EKHKSAVNALALSDD---GTV  311 (437)
Q Consensus       253 ~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~--~-------~~~~~~~~~--------~~~~~~i~~~~~~~~---~~~  311 (437)
                      -.|..|.++|+|. ++..+..|...+ .+...  .       ......+.+        ......|..+.|+|.   +.+
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            3688899999999 666666554443 33211  0       000011111        133457899999996   579


Q ss_pred             EEEEeCCCcEEEEECCCCccc
Q 013717          312 LFSGACDRSILVWDREDSANH  332 (437)
Q Consensus       312 l~~~~~dg~i~i~d~~~~~~~  332 (437)
                      |++-..|+++++||+.....+
T Consensus       164 l~vLtsdn~lR~y~~~~~~~p  184 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQHP  184 (717)
T ss_pred             EEEEecCCEEEEEecCCCCCC
Confidence            999999999999999865443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.89  E-value=0.42  Score=48.15  Aligned_cols=124  Identities=10%  Similarity=0.045  Sum_probs=77.7

Q ss_pred             EEEECCCcEEEEECCCcceEE-----Eee------cccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEE
Q 013717          226 YSVSWDKSLKIWRASDLRCLE-----SIK------AHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIAT  292 (437)
Q Consensus       226 ~~~~~dg~i~iwd~~~~~~~~-----~~~------~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~  292 (437)
                      +..+.+-.|..||+++...-.     -+.      .......++.|+|.-.  .++...|+.|++..+.....   ....
T Consensus       118 ~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~---~v~s  194 (1405)
T KOG3630|consen  118 VSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQ---NVTS  194 (1405)
T ss_pred             EEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhh---hhcc
Confidence            334445578899997653221     111      1233456778887654  77888899999986542211   1111


Q ss_pred             eeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC
Q 013717          293 LEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG  354 (437)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  354 (437)
                      + ......++++|+|.|+.++.|-..|++.-|...-.. ...+..........|.++.|-+.
T Consensus       195 ~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei-k~~ip~Pp~~e~yrvl~v~Wl~t  254 (1405)
T KOG3630|consen  195 F-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI-KSEIPEPPVEENYRVLSVTWLST  254 (1405)
T ss_pred             c-CcccceeeEEeccccceeeEecCCCeEEEeecccce-eecccCCCcCCCcceeEEEEecc
Confidence            1 245678999999999999999999999999865321 11111111112467889998876

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.82  E-value=0.14  Score=49.93  Aligned_cols=165  Identities=12%  Similarity=0.079  Sum_probs=95.7

Q ss_pred             cccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCc--ccce-eeEEeeCccccEEEEEEcc---CCCEEEEEeCCCcE
Q 013717          250 AHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNE--KRHA-LIATLEKHKSAVNALALSD---DGTVLFSGACDRSI  321 (437)
Q Consensus       250 ~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~--~~~~-~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i  321 (437)
                      +..+.|-.+.|-.-..  +.  -.-|.+.+||++.-.  .... .+.........+.-+.|.|   +.-++..+..++.|
T Consensus       130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i  207 (1283)
T KOG1916|consen  130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI  207 (1283)
T ss_pred             cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence            4555666666642221  22  233677788765311  1111 2222333445566667766   56688888889999


Q ss_pred             EEEECCCCccceEEeeeecccccc-------------eEEEEeeCCEEEEEeCCCcEEEeeCCCC--CCeeeeeeecCCC
Q 013717          322 LVWDREDSANHMVVTGALRGHGKA-------------ILCLINVAGLLMSGSADRTVRIWQRGSD--GRFGCLAVLEGHT  386 (437)
Q Consensus       322 ~i~d~~~~~~~~~~~~~~~~~~~~-------------i~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~h~  386 (437)
                      ++..+.....     ..+.+|...             +-.++++|..++.+..||.+++|.+.-.  ....|+...+.|.
T Consensus       208 ~lL~~~ra~~-----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd  282 (1283)
T KOG1916|consen  208 RLLNINRALR-----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD  282 (1283)
T ss_pred             eEeeechHHH-----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence            9888765332     112334433             3456778889999999999998876422  2334677777787


Q ss_pred             -CCeeEEEEEccCCC----CceEEEEEecCC-CcEEEEeec
Q 013717          387 -KPVKSLTAVTEEGQ----NGVVSVFSGSLD-GEIRAWQVS  421 (437)
Q Consensus       387 -~~v~~l~~~~~~~~----~~~~~l~s~~~d-g~i~iw~~~  421 (437)
                       .+-.|.-|+.....    ...++++++++- ..+++|.-.
T Consensus       283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a  323 (1283)
T KOG1916|consen  283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEA  323 (1283)
T ss_pred             CCCceeeeeccccccCCccceeEEEEecccCCcceeEeecc
Confidence             44444444433322    234567777654 468999743

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.78  E-value=2.3  Score=36.19  Aligned_cols=231  Identities=14%  Similarity=0.172  Sum_probs=112.7

Q ss_pred             EEEEeCCe---EEEEecCCe-EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC
Q 013717          147 SVTFCDGK---IFTAHQDCK-IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN  222 (437)
Q Consensus       147 ~l~~~~~~---l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  222 (437)
                      .|+++|..   ++.+-.-|+ ..++|.+..+....+.                      ..+.+.|.+|.-      |++
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~----------------------s~~~RHfyGHGv------fs~  123 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV----------------------SQEGRHFYGHGV------FSP  123 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe----------------------cccCceeecccc------cCC
Confidence            45555432   444544444 4567877766444333                      223344455642      555


Q ss_pred             --CeEEEEEC-----CCcEEEEECCCc-ceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEe--------cCCCCcc
Q 013717          223 --GLIYSVSW-----DKSLKIWRASDL-RCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVW--------AKPFNEK  285 (437)
Q Consensus       223 --~~l~~~~~-----dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iw--------d~~~~~~  285 (437)
                        .+|+..-.     -|.|-|||.+.+ +.+.++..|.-.-..+.+.+||+ ++.+.  |-|..-        +++..+.
T Consensus       124 dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMeP  201 (366)
T COG3490         124 DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEP  201 (366)
T ss_pred             CCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCc
Confidence              45554432     377999998753 45666777777778899999999 44432  222222        1111111


Q ss_pred             ccee--------eE--Eee--CccccEEEEEEccCCCEEEEEeCCCcE----EEEECCCCccceEEeee----ecccccc
Q 013717          286 RHAL--------IA--TLE--KHKSAVNALALSDDGTVLFSGACDRSI----LVWDREDSANHMVVTGA----LRGHGKA  345 (437)
Q Consensus       286 ~~~~--------~~--~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i----~i~d~~~~~~~~~~~~~----~~~~~~~  345 (437)
                      ...+        +.  ++.  .+...|..++..+||+.++.+-..|.-    -+.-.........+...    .......
T Consensus       202 Slvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anY  281 (366)
T COG3490         202 SLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANY  281 (366)
T ss_pred             cEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhh
Confidence            1111        11  111  234567888888888766554332210    00000011111111100    0111223


Q ss_pred             eEEEEee--CC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717          346 ILCLINV--AG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       346 i~~~~~~--~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~  419 (437)
                      |-+++.+  .. ..+++-..+...+||..++.   .+..-  --.....++-...+       ++..+.+|.+.++.
T Consensus       282 igsiA~n~~~glV~lTSP~GN~~vi~da~tG~---vv~~a--~l~daaGva~~~~g-------f~vssg~G~~~~~s  346 (366)
T COG3490         282 IGSIAANRRDGLVALTSPRGNRAVIWDAATGA---VVSEA--ALPDAAGVAAAKGG-------FAVSSGQGRIIFYS  346 (366)
T ss_pred             hhheeecccCCeEEEecCCCCeEEEEEcCCCc---EEecc--cccccccceeccCc-------eEEecCCceEEecc
Confidence            4455555  23 44445556678899999987   22111  11122334333433       55566688998884

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.74  E-value=0.21  Score=28.68  Aligned_cols=31  Identities=16%  Similarity=0.173  Sum_probs=25.9

Q ss_pred             ccEEEEEEccCC---CEEEEEeCCCcEEEEECCC
Q 013717          298 SAVNALALSDDG---TVLFSGACDRSILVWDRED  328 (437)
Q Consensus       298 ~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~  328 (437)
                      +.+.++.|+|+.   .+|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468899999844   4888888889999999985

It contains a characteristic DLL sequence motif.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.62  E-value=0.84  Score=41.30  Aligned_cols=134  Identities=4%  Similarity=-0.000  Sum_probs=82.2

Q ss_pred             EEEEeCC-CeEEEEECCCcEEEEECCCcc---eEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceee
Q 013717          216 TGLAVNN-GLIYSVSWDKSLKIWRASDLR---CLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALI  290 (437)
Q Consensus       216 ~~~~~~~-~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~  290 (437)
                      +.+-|+. +..+.+...|.+.-|-+....   ++..-...+++|.++.|++|++ +|+--.+..|.+++...+.......
T Consensus        26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~  105 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT  105 (657)
T ss_pred             cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence            4444544 333334444555555443221   1222224567999999999999 8999999999999875554444444


Q ss_pred             EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC
Q 013717          291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG  354 (437)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  354 (437)
                      .+.+.....|....|+.+ .-++.....| +-+|.....++....   ...|...|..+.|..+
T Consensus       106 ~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRl---Vks~~~nvnWy~yc~e  164 (657)
T KOG2377|consen  106 QECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRL---VKSHNLNVNWYMYCPE  164 (657)
T ss_pred             HHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhh---hhhcccCccEEEEccc
Confidence            445555667999999866 4555555444 777776544333222   3446667777777655

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=94.58  E-value=4.1  Score=38.29  Aligned_cols=272  Identities=10%  Similarity=0.117  Sum_probs=140.5

Q ss_pred             CccCCeEEEEee-CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEe-CCeEEEEecCCeEEEEeCCCCc
Q 013717           96 GHKLPIGCIAVH-HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC-DGKIFTAHQDCKIRVWQLTPTK  173 (437)
Q Consensus        96 ~h~~~V~~l~~~-~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~  173 (437)
                      --..+|.++.++ ...+..|+.+-+..||..+++.-.....    ....+|..+..+ .+++..|+.+| +.+.+.+..+
T Consensus       162 l~d~~V~aLv~D~~g~lWvgT~dGL~~fd~~~gkalql~s~----~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G~~  236 (671)
T COG3292         162 LKDTPVVALVFDANGRLWVGTPDGLSYFDAGRGKALQLASP----PLDKAINALIADVQGRLWVGTDQG-VYLQEAEGWR  236 (671)
T ss_pred             ccCccceeeeeeccCcEEEecCCcceEEccccceEEEcCCC----cchhhHHHHHHHhcCcEEEEeccc-eEEEchhhcc
Confidence            445678889998 7788889988888888887533333221    233566666666 45588888877 6666665422


Q ss_pred             ccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEe-e--
Q 013717          174 HHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESI-K--  249 (437)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~-~--  249 (437)
                      .......                             -....|..+.-+. ..+-.|+.+|..+. ........... +  
T Consensus       237 ~sn~~~~-----------------------------lp~~~I~ll~qD~qG~lWiGTenGl~r~-~l~rq~Lq~~~~~~~  286 (671)
T COG3292         237 ASNWGPM-----------------------------LPSGNILLLVQDAQGELWIGTENGLWRT-RLPRQGLQIPLSKMH  286 (671)
T ss_pred             ccccCCC-----------------------------CcchheeeeecccCCCEEEeecccceeE-ecCCCCccccccccC
Confidence            1111111                             1334555555555 77888887775433 22222222111 1  


Q ss_pred             cccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccc-cEEEEEEcc--CCCEEEEEeCCCcEEEEEC
Q 013717          250 AHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKS-AVNALALSD--DGTVLFSGACDRSILVWDR  326 (437)
Q Consensus       250 ~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~i~~~~~~~--~~~~l~~~~~dg~i~i~d~  326 (437)
                      ..-..|.++-...+|.+.+++.+|.+++-+-     .+.....+....+ .+...+..|  .+..+.-...-|.+.+-+-
T Consensus       287 l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a-----~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~  361 (671)
T COG3292         287 LGVSTVNSLWLDTDGSLWVGTYGGIVRYLTA-----DWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANG  361 (671)
T ss_pred             CccccccceeeccCCCEeeeccCceEEEecc-----hhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecC
Confidence            1234567777777888999999998887532     1222222222111 111112222  1222222222333334343


Q ss_pred             CCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecC-CCCCeeEEEEEccCCCCceEE
Q 013717          327 EDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEG-HTKPVKSLTAVTEEGQNGVVS  405 (437)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~  405 (437)
                      .++..... ....++..-...+++- ...+-.|+...-+-.|+.++..  ..+....+ -.++|..|.-.|+++      
T Consensus       362 stG~~v~s-v~q~Rg~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~~--avlde~agl~ss~V~aived~dns------  431 (671)
T COG3292         362 STGELVRS-VHQLRGMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNEW--AVLDEDAGLPSSEVSAIVEDPDNS------  431 (671)
T ss_pred             CCCcEEEE-eeeccccccchhhhcc-CCcEEEEecccchhhhccCCcc--cccccccCCcccceeeeeecCCCC------
Confidence            33332221 2222222222233333 3356666666446667666511  12222222 345777777777763      


Q ss_pred             EEEecCCCcEEE
Q 013717          406 VFSGSLDGEIRA  417 (437)
Q Consensus       406 l~s~~~dg~i~i  417 (437)
                      |.-|+.+|-++.
T Consensus       432 LWIGTs~Glvk~  443 (671)
T COG3292         432 LWIGTSGGLVKR  443 (671)
T ss_pred             EEEeccCCeEec
Confidence            777888876654

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.56  E-value=3.4  Score=37.24  Aligned_cols=180  Identities=11%  Similarity=0.114  Sum_probs=84.1

Q ss_pred             CCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCC-----eEEEecCCCCcccceeeEEeeCccccEEEEE
Q 013717          231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADR-----KIRVWAKPFNEKRHALIATLEKHKSAVNALA  304 (437)
Q Consensus       231 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~  304 (437)
                      ...|.-.|+.+++....+. ....+..+.|+|... ++.=+.+|     .-+||-++.+......+..-. ....+..=-
T Consensus       167 ~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEf  244 (386)
T PF14583_consen  167 HCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEF  244 (386)
T ss_dssp             -EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEE
T ss_pred             CceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCccccccc
Confidence            3456777888887655554 566788899999766 44433322     236776655544333333222 233455556


Q ss_pred             EccCCCEEEEE-----eCCCcEEEEECCCCccceEEeeeecccccceEEEE--eeCCEEEEEeCCC--------------
Q 013717          305 LSDDGTVLFSG-----ACDRSILVWDREDSANHMVVTGALRGHGKAILCLI--NVAGLLMSGSADR--------------  363 (437)
Q Consensus       305 ~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~l~~~~~dg--------------  363 (437)
                      |.|||..|.--     +.+..|.-+|+.+++.....  ..    .....+.  .++.+++-=+.|.              
T Consensus       245 w~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~--~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~  318 (386)
T PF14583_consen  245 WVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM--EM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIEN  318 (386)
T ss_dssp             E-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE--EE-----SEEEEEE-TTSSEEEEEE-----------------
T ss_pred             ccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE--eC----CceeeeEEcCCCCEEEecCCCCCccccccccceecC
Confidence            88999866542     22446777888776543211  11    1122222  2233443322221              


Q ss_pred             --cEEEeeCCCCCCeeeeee-------ecCCCC-CeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          364 --TVRIWQRGSDGRFGCLAV-------LEGHTK-PVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       364 --~i~iwd~~~~~~~~~~~~-------~~~h~~-~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                        -|++++++.+... .+..       +.+|.. .=-...|+||+..    +|++....|...||=++.+
T Consensus       319 ~p~i~~~~~~~~~~~-~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~----VlF~Sd~~G~~~vY~v~i~  383 (386)
T PF14583_consen  319 DPWIYLFDVEAGRFR-KLARHDTSWKVLDGDRQVTHPHPSFSPDGKW----VLFRSDMEGPPAVYLVEIP  383 (386)
T ss_dssp             --EEEEEETTTTEEE-EEEE-------BTTBSSTT----EE-TTSSE----EEEEE-TTSS-EEEEEE--
T ss_pred             CcEEEEeccccCcee-eeeeccCcceeecCCCccCCCCCccCCCCCE----EEEECCCCCCccEEEEeCc
Confidence              4667787764421 1111       222221 1246789999874    8999999999888877654

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.42  E-value=2.5  Score=40.95  Aligned_cols=90  Identities=10%  Similarity=0.110  Sum_probs=57.0

Q ss_pred             CCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCC
Q 013717          231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGT  310 (437)
Q Consensus       231 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  310 (437)
                      --.|+||+. +|+.+..+.-..+.+..+.|+.+..|++...+|.+++|++-....... -.-+......|....|..+|-
T Consensus        63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~-svg~e~~~~~I~ec~~f~~GV  140 (829)
T KOG2280|consen   63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESN-SVGFESQMSDIVECRFFHNGV  140 (829)
T ss_pred             ceeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhccc-ccccccccCceeEEEEecCce
Confidence            345888886 566666665555588899999888899999999999998753321111 011122334566666666664


Q ss_pred             EEEEEeCCCcEEEE
Q 013717          311 VLFSGACDRSILVW  324 (437)
Q Consensus       311 ~l~~~~~dg~i~i~  324 (437)
                      .+++  .+|.+.+-
T Consensus       141 avlt--~~g~v~~i  152 (829)
T KOG2280|consen  141 AVLT--VSGQVILI  152 (829)
T ss_pred             EEEe--cCCcEEEE
Confidence            4444  34555443

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.24  E-value=0.21  Score=50.13  Aligned_cols=96  Identities=14%  Similarity=0.067  Sum_probs=65.5

Q ss_pred             CcEEEEEeCC---CeEEEEECCCcEEEEECCCcce-EEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc
Q 013717          213 DAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRC-LESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH  287 (437)
Q Consensus       213 ~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~  287 (437)
                      ....++.|+|   ...+....|+.|++..+..... ...+ ......++++|+|.|+ ++.|-..|++.-|.....    
T Consensus       156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le----  230 (1405)
T KOG3630|consen  156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE----  230 (1405)
T ss_pred             cccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccc----
Confidence            4456778888   6677778899999887654322 2222 3456789999999999 999999999998854321    


Q ss_pred             eeeEEeeC----ccccEEEEEEccCCCEEEE
Q 013717          288 ALIATLEK----HKSAVNALALSDDGTVLFS  314 (437)
Q Consensus       288 ~~~~~~~~----~~~~i~~~~~~~~~~~l~~  314 (437)
                       ....+.+    ....|.+|.|.....++++
T Consensus       231 -ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  231 -IKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             -eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence             1111111    1467899999876655554

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=94.21  E-value=4.4  Score=37.15  Aligned_cols=63  Identities=16%  Similarity=0.212  Sum_probs=31.0

Q ss_pred             CCEEEEEec-C-eEEEEeCCC--CceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCC-----------eEEEEeCCC
Q 013717          108 HNFLYAASS-H-EINVYDRTG--TTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDC-----------KIRVWQLTP  171 (437)
Q Consensus       108 ~~~l~s~~~-d-~v~vwd~~~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg-----------~i~iwd~~~  171 (437)
                      +...+.|+. + .+.++|++.  ..+..+..+..   ....-.+++..++. ++.|+.+.           .+..||..+
T Consensus        39 ~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~---~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~  115 (376)
T PRK14131         39 NTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPG---GPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKT  115 (376)
T ss_pred             CEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCC---CCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCC
Confidence            444444444 3 777888863  34655544321   11111233334555 55665432           366677765


Q ss_pred             Cc
Q 013717          172 TK  173 (437)
Q Consensus       172 ~~  173 (437)
                      .+
T Consensus       116 n~  117 (376)
T PRK14131        116 NS  117 (376)
T ss_pred             CE
Confidence            54

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.11  E-value=3.4  Score=35.41  Aligned_cols=158  Identities=18%  Similarity=0.101  Sum_probs=85.4

Q ss_pred             cEEEEEEecCCe-EEEEe---CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEE-CCC
Q 013717          254 AVNAVAVSAGGT-VYTGS---ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD-RED  328 (437)
Q Consensus       254 ~v~~~~~~~~~~-l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d-~~~  328 (437)
                      .+.+.++++++. ++...   ....|.++...  ..   .....  ....+..-.|++++...+....+...+++. ...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~---~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~   97 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GP---VRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSAS   97 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Cc---ceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCC
Confidence            688999999998 55444   33445555432  21   11111  233677889999987777766666667764 333


Q ss_pred             CccceEEeeeecccccceEEEEeeCC--EEEE---EeCCCcEEEeeCCCCCCe------eeeeeecCCCCCeeEEEEEcc
Q 013717          329 SANHMVVTGALRGHGKAILCLINVAG--LLMS---GSADRTVRIWQRGSDGRF------GCLAVLEGHTKPVKSLTAVTE  397 (437)
Q Consensus       329 ~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~---~~~dg~i~iwd~~~~~~~------~~~~~~~~h~~~v~~l~~~~~  397 (437)
                      +........ ...-...|..+..+++  .++.   ...++.|.+=-+......      ..+.........+++++|.++
T Consensus        98 g~~~~~~v~-~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~  176 (253)
T PF10647_consen   98 GTGEPVEVD-WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD  176 (253)
T ss_pred             CcceeEEec-ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence            322221111 1111127777776655  3333   334577777655432211      122233334568999999998


Q ss_pred             CCCCceEEEEEecCCCcEEE-EeeccC
Q 013717          398 EGQNGVVSVFSGSLDGEIRA-WQVSVS  423 (437)
Q Consensus       398 ~~~~~~~~l~s~~~dg~i~i-w~~~~~  423 (437)
                      ..    ..+++...++.+.. ..+..+
T Consensus       177 ~~----L~V~~~~~~~~~~~~v~~dG~  199 (253)
T PF10647_consen  177 ST----LVVLGRSAGGPVVRLVSVDGG  199 (253)
T ss_pred             CE----EEEEeCCCCCceeEEEEccCC
Confidence            84    23333344444444 444433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.04  E-value=4.7  Score=36.87  Aligned_cols=193  Identities=18%  Similarity=0.163  Sum_probs=103.4

Q ss_pred             EEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEE
Q 013717          149 TFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSV  228 (437)
Q Consensus       149 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~  228 (437)
                      +..++.+..+..+|.|.-.|.++++.+........                        ...-..++   ......++.+
T Consensus        65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~------------------------~~~~~~~~---~~~~G~i~~g  117 (370)
T COG1520          65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGA------------------------VAQLSGPI---LGSDGKIYVG  117 (370)
T ss_pred             EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCc------------------------ceeccCce---EEeCCeEEEe
Confidence            34456677888899888888888864322221100                        00001111   1113668899


Q ss_pred             ECCCcEEEEECCCcceEEEeeccc-ccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeE----EeeCccccEEEE
Q 013717          229 SWDKSLKIWRASDLRCLESIKAHE-DAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIA----TLEKHKSAVNAL  303 (437)
Q Consensus       229 ~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~~~~~i~~~  303 (437)
                      +.+|.+..+|..+++.+....... ..+..-....++.+..++.+|.+...|..++...+....    .......++   
T Consensus       118 ~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~---  194 (370)
T COG1520         118 SWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA---  194 (370)
T ss_pred             cccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce---
Confidence            999999999999999888877544 122223333456666666788888887765553332211    111111111   


Q ss_pred             EEccCCCEEEEEeC--CCcEEEEECCCCccceEEeeeecccccce--E-E----EEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717          304 ALSDDGTVLFSGAC--DRSILVWDREDSANHMVVTGALRGHGKAI--L-C----LINVAGLLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       304 ~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~i--~-~----~~~~~~~l~~~~~dg~i~iwd~~~~~  374 (437)
                        ..++ .++.+..  ++.+.-+|..++............-...+  . .    ....+.-+..++.++.+...|..+++
T Consensus       195 --~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~  271 (370)
T COG1520         195 --IASG-TVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGE  271 (370)
T ss_pred             --eecc-eEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCc
Confidence              2233 3444444  56677778777765544321111111100  0 0    01112244667777878888888776

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=93.98  E-value=5  Score=36.97  Aligned_cols=143  Identities=13%  Similarity=0.164  Sum_probs=78.9

Q ss_pred             eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC------CeEEE
Q 013717          154 KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN------GLIYS  227 (437)
Q Consensus       154 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~l~~  227 (437)
                      .++.|+..|.++||+.........-..                          +-..-..+|..+....      ...++
T Consensus        39 ~IivGS~~G~LrIy~P~~~~~~~~~ll--------------------------lE~~l~~PILqv~~G~F~s~~~~~~La   92 (418)
T PF14727_consen   39 KIIVGSYSGILRIYDPSGNEFQPEDLL--------------------------LETQLKDPILQVECGKFVSGSEDLQLA   92 (418)
T ss_pred             EEEEeccccEEEEEccCCCCCCCccEE--------------------------EEEecCCcEEEEEeccccCCCCcceEE
Confidence            499999999999999854431110000                          0012334555554421      22333


Q ss_pred             EECCCcEEEEECCC--cc-------eEEEeecc--cccEEEEEEec----CCe--EEEEeCCCeEEEecCCCCcccceee
Q 013717          228 VSWDKSLKIWRASD--LR-------CLESIKAH--EDAVNAVAVSA----GGT--VYTGSADRKIRVWAKPFNEKRHALI  290 (437)
Q Consensus       228 ~~~dg~i~iwd~~~--~~-------~~~~~~~~--~~~v~~~~~~~----~~~--l~~~~~dg~v~iwd~~~~~~~~~~~  290 (437)
                      .-.-..+.+|.+..  +.       .+..+..|  ......+++-|    .++  +.+=+.||.+.+|+-+.    ....
T Consensus        93 VLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~----~~f~  168 (418)
T PF14727_consen   93 VLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES----FAFS  168 (418)
T ss_pred             EecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc----EEEE
Confidence            34455666666521  11       11222222  23344444443    223  78889999999996432    2222


Q ss_pred             EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECC
Q 013717          291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE  327 (437)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (437)
                      ..+.. ---.-.+.|.+.-..|++++.+..+..|...
T Consensus       169 ~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  169 RFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             EEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence            22222 2233457788888899999999999998764

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.96  E-value=0.6  Score=38.84  Aligned_cols=70  Identities=10%  Similarity=0.227  Sum_probs=51.5

Q ss_pred             CCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEe-------e-------cccccEEEEEEecCCeEEEEeCCCeEEE
Q 013717          212 GDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESI-------K-------AHEDAVNAVAVSAGGTVYTGSADRKIRV  277 (437)
Q Consensus       212 ~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~l~~~~~dg~v~i  277 (437)
                      ..++..+....+++++.+.+|.+++||+.+++.+..-       .       .....|..+.+..+|..++.-.+|....
T Consensus        12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~   91 (219)
T PF07569_consen   12 GSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYS   91 (219)
T ss_pred             CCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEE
Confidence            3466678878899999999999999999998765432       1       2446788888888888333345678888


Q ss_pred             ecCC
Q 013717          278 WAKP  281 (437)
Q Consensus       278 wd~~  281 (437)
                      |+..
T Consensus        92 y~~~   95 (219)
T PF07569_consen   92 YSPD   95 (219)
T ss_pred             eccc
Confidence            8653

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=93.85  E-value=8.1  Score=38.92  Aligned_cols=69  Identities=12%  Similarity=0.122  Sum_probs=40.8

Q ss_pred             CCEEEEEecC-eEEEEeCCCCceeeeeccccCC----CCcccEEEEEEe------------------CCeEEEEecCCeE
Q 013717          108 HNFLYAASSH-EINVYDRTGTTWTSINTFNDND----SSSGSVKSVTFC------------------DGKIFTAHQDCKI  164 (437)
Q Consensus       108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~----~h~~~v~~l~~~------------------~~~l~s~~~dg~i  164 (437)
                      ++.|+.++.+ .|.-.|..+++..=........    .| .....+.+.                  +++++.++.|+.+
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L  272 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQH-QTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL  272 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccc-ccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence            7777777777 8888888886322111111000    00 011223332                  3368888899999


Q ss_pred             EEEeCCCCccccc
Q 013717          165 RVWQLTPTKHHKL  177 (437)
Q Consensus       165 ~iwd~~~~~~~~~  177 (437)
                      .-.|.++++....
T Consensus       273 iALDA~TGk~~W~  285 (764)
T TIGR03074       273 IALDADTGKLCED  285 (764)
T ss_pred             EEEECCCCCEEEE
Confidence            9999999875543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.85  E-value=2.6  Score=40.82  Aligned_cols=115  Identities=11%  Similarity=0.187  Sum_probs=67.8

Q ss_pred             ccEEEEEEecCCeEEEE-eCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEc--cCCCEEEEEeCCCcEEEEECC--
Q 013717          253 DAVNAVAVSAGGTVYTG-SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALS--DDGTVLFSGACDRSILVWDRE--  327 (437)
Q Consensus       253 ~~v~~~~~~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~--  327 (437)
                      ....-+.-+.-++++.. +....+.|||.+...  .+....+ ...+.|.++.|.  |+|+.+++.+....|.+|.-.  
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~--lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~  106 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV--LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY  106 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcE--EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch
Confidence            34445555555664444 445679999987544  2222233 457789999986  589999998899999998542  


Q ss_pred             ---CCccceEEee--eecccc-cceEEEEeeCC-EEEEEeCCCcEEEeeCC
Q 013717          328 ---DSANHMVVTG--ALRGHG-KAILCLINVAG-LLMSGSADRTVRIWQRG  371 (437)
Q Consensus       328 ---~~~~~~~~~~--~~~~~~-~~i~~~~~~~~-~l~~~~~dg~i~iwd~~  371 (437)
                         ..........  .+..+. .+|....|-++ .+++|+ ++.+.|+|-.
T Consensus       107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~  156 (631)
T PF12234_consen  107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDKW  156 (631)
T ss_pred             hhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECCC
Confidence               1111111111  122233 45667777666 444444 4468888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.69  E-value=0.0025  Score=57.10  Aligned_cols=243  Identities=12%  Similarity=0.098  Sum_probs=138.1

Q ss_pred             CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC--e-EEEEecCCeEEEEeCCCCcccccccccCc
Q 013717          108 HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG--K-IFTAHQDCKIRVWQLTPTKHHKLKTTLPT  183 (437)
Q Consensus       108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  183 (437)
                      +.-++.++.+ .+..||-...   .....    .-.+....++|.-+  . ++.+-..+.+.+||+.+....+.-..-  
T Consensus        46 ~~nlavaca~tiv~~YD~agq---~~le~----n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg--  116 (615)
T KOG2247|consen   46 GHNLAVACANTIVIYYDKAGQ---VILEL----NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG--  116 (615)
T ss_pred             CCceehhhhhhHHHhhhhhcc---eeccc----CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC--
Confidence            4447777777 8999997763   22222    24566677888733  3 667778899999999865422221100  


Q ss_pred             cccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEe
Q 013717          184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVS  261 (437)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  261 (437)
                                                .|....  +.|++  ..++.+-..|.+.|++..+.+.+...-.|...++++++.
T Consensus       117 --------------------------~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~  168 (615)
T KOG2247|consen  117 --------------------------TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT  168 (615)
T ss_pred             --------------------------cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence                                      122222  45555  667777788999999988877766665588999999999


Q ss_pred             cCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEE-----EEE---EccCCCEEEEEeCCCcEEEE--ECCCCcc
Q 013717          262 AGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVN-----ALA---LSDDGTVLFSGACDRSILVW--DREDSAN  331 (437)
Q Consensus       262 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~-----~~~---~~~~~~~l~~~~~dg~i~i~--d~~~~~~  331 (437)
                      +.+..+.++.|..+.+-...+..     ....+ ..+...     .+.   |..-|..+...- .|.+++.  .+.....
T Consensus       169 lEd~vil~dcd~~L~v~~qeget-----a~lte-vggepdnm~~~y~k~n~w~kage~m~sVv-sgKkhl~yak~nE~D~  241 (615)
T KOG2247|consen  169 LEDYVILCDCDNTLSVTTQEGET-----ASLTE-VGGEPDNMDFFYGKVNGWGKAGETMVSVV-SGKKHLMYAKYNELDE  241 (615)
T ss_pred             ccceeeecCcHHHHHHhhhccce-----eeeee-ccCccchhhhheeeeeccccccceeeeee-ecHHHHHHHhhcCCCC
Confidence            99998888888777665332211     11111 111111     111   222233333221 1222221  1111111


Q ss_pred             ceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717          332 HMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT  396 (437)
Q Consensus       332 ~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~  396 (437)
                      +..+  .++...+.+.|..|-.+ +|..+..-|.|..-...+.+-...+.....|.+.+..++.+.
T Consensus       242 pval--~fq~~~gni~cyrwylDg~i~igf~ag~iV~iS~h~aeLgaeffqkldy~~aLqsiavsq  305 (615)
T KOG2247|consen  242 PVAL--QFQEKYGNIHCYRWYLDGYILIGFDAGYIVSISAHNAELGAEFFQKLDYRGALQSIAVSQ  305 (615)
T ss_pred             ccce--EeeecCCceeEEEEeccccccccccceeEEEEeccchHHHHHHHHHhhHHhhhHHHHHHH
Confidence            1112  34445667788888777 888888888877777666552222222225666666555543

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.36  E-value=6.4  Score=36.19  Aligned_cols=110  Identities=9%  Similarity=0.073  Sum_probs=67.1

Q ss_pred             CCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcc-----eEEEeec--ccccEEEEEEecCCeEEEEeCCCeEEEecCCC
Q 013717          211 HGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLR-----CLESIKA--HEDAVNAVAVSAGGTVYTGSADRKIRVWAKPF  282 (437)
Q Consensus       211 ~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~--~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~  282 (437)
                      ....+.++.+.+ ..++.++.+|.+..- ...++     .......  ....+.++.+.+++.++.++..|.+..-.-  
T Consensus       279 ~~~~l~~v~~~~dg~l~l~g~~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D--  355 (398)
T PLN00033        279 SARRIQNMGWRADGGLWLLTRGGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTD--  355 (398)
T ss_pred             CccceeeeeEcCCCCEEEEeCCceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCC--
Confidence            345677888876 566666677776443 33443     1222221  223588999998888888888887776632  


Q ss_pred             CcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 013717          283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVW  324 (437)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  324 (437)
                      +.+.++....-..-....+.+.|.++++.+++| .+|.|.-|
T Consensus       356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~  396 (398)
T PLN00033        356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY  396 (398)
T ss_pred             CCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence            333333332222334678899998877666655 67776554

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.29  E-value=4.9  Score=38.02  Aligned_cols=151  Identities=13%  Similarity=0.113  Sum_probs=86.0

Q ss_pred             ccEEEEEEecCCe--EEEEe--CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccC----CCEEEEEeCCCcEEEE
Q 013717          253 DAVNAVAVSAGGT--VYTGS--ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD----GTVLFSGACDRSILVW  324 (437)
Q Consensus       253 ~~v~~~~~~~~~~--l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg~i~i~  324 (437)
                      .++..++|. ||+  +++.-  .+|.+++=|-       ..+..|    ..|..+.|.|-    -..|++......|.||
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds-------~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVW   87 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS-------KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVW   87 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCCc-------cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEE
Confidence            467888987 555  44432  3455554321       233333    45889999984    3355556678899999


Q ss_pred             ECCCC---ccceEEeeee-cccccce--EEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717          325 DREDS---ANHMVVTGAL-RGHGKAI--LCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT  396 (437)
Q Consensus       325 d~~~~---~~~~~~~~~~-~~~~~~i--~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~  396 (437)
                      .+...   +.+....+.- -+..-++  ..+.|++.  .|++-.....-.++++..... .....+ ...+.|.|.+|..
T Consensus        88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi-~~~G~IhCACWT~  165 (671)
T PF15390_consen   88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS-RVKADI-KTSGLIHCACWTK  165 (671)
T ss_pred             EeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc-eEEEec-cCCceEEEEEecC
Confidence            98621   1111111110 0011111  33456655  555555555455667765442 122333 4567899999999


Q ss_pred             cCCCCceEEEEEecCCCcEEEEeec
Q 013717          397 EEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       397 ~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      ||.    +++++.|..=.-++||=.
T Consensus       166 DG~----RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  166 DGQ----RLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             cCC----EEEEEeCCeEEEEEecCc
Confidence            887    477777776677889844

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.24  E-value=0.68  Score=38.52  Aligned_cols=74  Identities=9%  Similarity=0.166  Sum_probs=51.0

Q ss_pred             cceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCee----eeeeec-------CCCCCeeEEEEEccCCCCceEEEEEecCC
Q 013717          344 KAILCLINVAGLLMSGSADRTVRIWQRGSDGRFG----CLAVLE-------GHTKPVKSLTAVTEEGQNGVVSVFSGSLD  412 (437)
Q Consensus       344 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~-------~h~~~v~~l~~~~~~~~~~~~~l~s~~~d  412 (437)
                      ..+..+...+.+|++-+.+|.+++||+.+.+...    ....+.       .....|..+....+|-     -+++-+ +
T Consensus        13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-----PiV~ls-n   86 (219)
T PF07569_consen   13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-----PIVTLS-N   86 (219)
T ss_pred             CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-----EEEEEe-C
Confidence            4566678888899999999999999999866210    001122       3556788888886663     355554 5


Q ss_pred             CcEEEEeeccC
Q 013717          413 GEIRAWQVSVS  423 (437)
Q Consensus       413 g~i~iw~~~~~  423 (437)
                      |..+.|+.+.+
T Consensus        87 g~~y~y~~~L~   97 (219)
T PF07569_consen   87 GDSYSYSPDLG   97 (219)
T ss_pred             CCEEEeccccc
Confidence            78888886654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.82  E-value=7.5  Score=35.51  Aligned_cols=73  Identities=15%  Similarity=0.206  Sum_probs=39.8

Q ss_pred             ccEEEEEEecCCeEEEEeC------------CC-eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC
Q 013717          253 DAVNAVAVSAGGTVYTGSA------------DR-KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR  319 (437)
Q Consensus       253 ~~v~~~~~~~~~~l~~~~~------------dg-~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  319 (437)
                      .....|+|.++|+|.++..            .+ .|.+++-............+.........+++.++| +++ +....
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            3456788888888666542            23 676665332222222233333334456889999988 444 44444


Q ss_pred             cEEEEECC
Q 013717          320 SILVWDRE  327 (437)
Q Consensus       320 ~i~i~d~~  327 (437)
                      ..++.|..
T Consensus        92 i~~~~d~~   99 (367)
T TIGR02604        92 ILFLRDKD   99 (367)
T ss_pred             EEEEeCCC
Confidence            33343543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=92.72  E-value=5.6  Score=33.82  Aligned_cols=187  Identities=9%  Similarity=0.040  Sum_probs=108.4

Q ss_pred             eeeeecCccC--CeEEEEe-e-CCEEEEEe-cC--eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEE-EEecC
Q 013717           90 INSVQLGHKL--PIGCIAV-H-HNFLYAAS-SH--EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIF-TAHQD  161 (437)
Q Consensus        90 ~~~~~~~h~~--~V~~l~~-~-~~~l~s~~-~d--~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~-s~~~d  161 (437)
                      ..+..+.|..  -...+.| . +.++-+.+ .+  .|+.+|+++++......+.    ..--=..|+..++.|+ -.=.+
T Consensus        34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~----~~~FgEGit~~~d~l~qLTWk~  109 (264)
T PF05096_consen   34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP----PRYFGEGITILGDKLYQLTWKE  109 (264)
T ss_dssp             EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T----TT--EEEEEEETTEEEEEESSS
T ss_pred             EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC----ccccceeEEEECCEEEEEEecC
Confidence            4445555543  3557888 5 55555555 33  9999999998665555542    2334456666677744 34467


Q ss_pred             CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCC
Q 013717          162 CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASD  241 (437)
Q Consensus       162 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~  241 (437)
                      +...+||.++-+....+.                               ....=+.++.+...|+.......|+++|..+
T Consensus       110 ~~~f~yd~~tl~~~~~~~-------------------------------y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~  158 (264)
T PF05096_consen  110 GTGFVYDPNTLKKIGTFP-------------------------------YPGEGWGLTSDGKRLIMSDGSSRLYFLDPET  158 (264)
T ss_dssp             SEEEEEETTTTEEEEEEE--------------------------------SSS--EEEECSSCEEEE-SSSEEEEE-TTT
T ss_pred             CeEEEEccccceEEEEEe-------------------------------cCCcceEEEcCCCEEEEECCccceEEECCcc
Confidence            889999998776544332                               3345567777777777777788999999999


Q ss_pred             cceEEEeecc-----cccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEee---------------CccccE
Q 013717          242 LRCLESIKAH-----EDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLE---------------KHKSAV  300 (437)
Q Consensus       242 ~~~~~~~~~~-----~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---------------~~~~~i  300 (437)
                      .+....+...     -..++.+.+. +|. .|=.-....|...|..++.    ....+.               ....-.
T Consensus       159 f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~----V~~~iDls~L~~~~~~~~~~~~~~dVL  233 (264)
T PF05096_consen  159 FKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK----VVGWIDLSGLRPEVGRDKSRQPDDDVL  233 (264)
T ss_dssp             -SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-B----EEEEEE-HHHHHHHTSTTST--TTS-E
T ss_pred             cceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe----EEEEEEhhHhhhcccccccccccCCee
Confidence            8887776522     2346667765 566 4545556666666665543    222211               113457


Q ss_pred             EEEEEccCCCEEEEEe
Q 013717          301 NALALSDDGTVLFSGA  316 (437)
Q Consensus       301 ~~~~~~~~~~~l~~~~  316 (437)
                      +.|++.|....|+..+
T Consensus       234 NGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  234 NGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             EeEeEeCCCCEEEEEe
Confidence            8999998766555443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.71  E-value=7.9  Score=35.48  Aligned_cols=192  Identities=13%  Similarity=0.144  Sum_probs=83.2

Q ss_pred             CeEEEEE-CCCcEEEEECCCc----ceEEEeec---cc----ccEEEEEEecCCe-EEEE--eC----CCeEEEecCCCC
Q 013717          223 GLIYSVS-WDKSLKIWRASDL----RCLESIKA---HE----DAVNAVAVSAGGT-VYTG--SA----DRKIRVWAKPFN  283 (437)
Q Consensus       223 ~~l~~~~-~dg~i~iwd~~~~----~~~~~~~~---~~----~~v~~~~~~~~~~-l~~~--~~----dg~v~iwd~~~~  283 (437)
                      ++|+..+ ..+.|+|+|+.+.    +..+.+..   +.    ..-..+-.-|+|. ++++  ..    -|.+.++|-++ 
T Consensus        88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t-  166 (461)
T PF05694_consen   88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET-  166 (461)
T ss_dssp             -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred             CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc-
Confidence            6677666 7789999998743    33444432   11    1222333457786 4443  22    24566775432 


Q ss_pred             cccceeeEEeeCc---cccEEEEEEccCCCEEEEEeC--------------------CCcEEEEECCCCccceEEeeeec
Q 013717          284 EKRHALIATLEKH---KSAVNALALSDDGTVLFSGAC--------------------DRSILVWDREDSANHMVVTGALR  340 (437)
Q Consensus       284 ~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~--------------------dg~i~i~d~~~~~~~~~~~~~~~  340 (437)
                         .......+..   ..--..+-+.|..+.+++...                    ..++++||+.+.+....+-  +.
T Consensus       167 ---f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~id--Lg  241 (461)
T PF05694_consen  167 ---FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTID--LG  241 (461)
T ss_dssp             -----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEE--S-
T ss_pred             ---ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEe--cC
Confidence               3344444432   223456777787777777542                    3579999998765433322  22


Q ss_pred             ccccceEEEEe--eCC---EEEEEeCCCcEEEeeCCCCCCeeeee--eecC-----------------CCCCeeEEEEEc
Q 013717          341 GHGKAILCLIN--VAG---LLMSGSADRTVRIWQRGSDGRFGCLA--VLEG-----------------HTKPVKSLTAVT  396 (437)
Q Consensus       341 ~~~~~i~~~~~--~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~-----------------h~~~v~~l~~~~  396 (437)
                      ......+.+.|  ++.   -++.+.-..+|..|--.....+..-.  .+..                 -..-|++|..+.
T Consensus       242 ~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl  321 (461)
T PF05694_consen  242 EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL  321 (461)
T ss_dssp             TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T
T ss_pred             CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc
Confidence            22223444444  333   23333334445444332233232211  1111                 124589999999


Q ss_pred             cCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          397 EEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       397 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      |+..    +.+++=.+|.||.||+..+.
T Consensus       322 DDrf----LYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  322 DDRF----LYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             TS-E----EEEEETTTTEEEEEE-SSTT
T ss_pred             CCCE----EEEEcccCCcEEEEecCCCC
Confidence            8853    66677779999999998764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=92.62  E-value=7.3  Score=34.84  Aligned_cols=109  Identities=12%  Similarity=0.121  Sum_probs=52.5

Q ss_pred             EEeCCCeEEEEECC-----CcEEEEECCCcceE---EEeeccccc--EEEEEEecCCe-EEEEeC-----CCeEEEecCC
Q 013717          218 LAVNNGLIYSVSWD-----KSLKIWRASDLRCL---ESIKAHEDA--VNAVAVSAGGT-VYTGSA-----DRKIRVWAKP  281 (437)
Q Consensus       218 ~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~---~~~~~~~~~--v~~~~~~~~~~-l~~~~~-----dg~v~iwd~~  281 (437)
                      +.+...+++.|+.+     ..+..+|+.+.+..   ..+..-..+  -.+++.. +++ ++.|+.     ...+..||+.
T Consensus        69 ~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~  147 (323)
T TIGR03548        69 VSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLE  147 (323)
T ss_pred             EEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCC
Confidence            44444666667654     34667777665431   222111111  1122222 556 566654     2457788875


Q ss_pred             CCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC----cEEEEECCCCc
Q 013717          282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR----SILVWDREDSA  330 (437)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~  330 (437)
                      ++  .+..+..+.... .....+...++++.+.|+.++    .+.+||.++.+
T Consensus       148 ~~--~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       148 TQ--EWFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             CC--CeeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            43  343333222111 111122233567777777654    35688887643

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=92.43  E-value=8.2  Score=34.97  Aligned_cols=193  Identities=15%  Similarity=0.152  Sum_probs=108.6

Q ss_pred             CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEe----cCCe---EEEEeCC----CeEEEecCCCCcccceeeE
Q 013717          223 GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVS----AGGT---VYTGSAD----RKIRVWAKPFNEKRHALIA  291 (437)
Q Consensus       223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~---l~~~~~d----g~v~iwd~~~~~~~~~~~~  291 (437)
                      .+++....++-+.+||+. |+.++.+.  .+.++.+..-    -.|+   |++++.-    ..|++|.+.....   .+.
T Consensus        69 SlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g---~L~  142 (381)
T PF02333_consen   69 SLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG---ELT  142 (381)
T ss_dssp             -EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT---EEE
T ss_pred             ceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC---cce
Confidence            677888888999999985 55666664  2344444432    1343   5555532    5799997753221   122


Q ss_pred             Eee-------CccccEEEEEEc--c-CCC-EEEEEeCCCcEEEEECCC---CccceEEeeeecccccceEEEEeeCC--E
Q 013717          292 TLE-------KHKSAVNALALS--D-DGT-VLFSGACDRSILVWDRED---SANHMVVTGALRGHGKAILCLINVAG--L  355 (437)
Q Consensus       292 ~~~-------~~~~~i~~~~~~--~-~~~-~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~--~  355 (437)
                      .+.       .....+..+++-  + +|. +.+....+|.+..|.+..   +.....+.+.+.. ...+-.+..+..  +
T Consensus       143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~  221 (381)
T PF02333_consen  143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGR  221 (381)
T ss_dssp             E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTE
T ss_pred             EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCC
Confidence            221       112346677763  3 454 667788899998888753   2222334444443 335666666655  8


Q ss_pred             EEEEeCCCcEEEeeCCCCC--CeeeeeeecC--CCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          356 LMSGSADRTVRIWQRGSDG--RFGCLAVLEG--HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       356 l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      |+.+-++.-|.-|+.+...  ....+....+  ....|..|+.....+. .+.+|+|.-.+++..+|+.+.+
T Consensus       222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g-~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDG-KGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC--EEEEEEEGGGTEEEEEESSTT
T ss_pred             EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCC-CeEEEEEcCCCCeEEEEecCCC
Confidence            9999999777777776332  2233333332  3467889988764321 2356666667889999998754

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=92.37  E-value=14  Score=37.64  Aligned_cols=177  Identities=15%  Similarity=0.146  Sum_probs=101.6

Q ss_pred             cEEEEECCCcceEEEeecc----cccEEEEEEecCCe---EEEEe-----------CCCeEEEecCCCCcccceeeEEee
Q 013717          233 SLKIWRASDLRCLESIKAH----EDAVNAVAVSAGGT---VYTGS-----------ADRKIRVWAKPFNEKRHALIATLE  294 (437)
Q Consensus       233 ~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~---l~~~~-----------~dg~v~iwd~~~~~~~~~~~~~~~  294 (437)
                      .|+++|..+++.+..+...    .-.+.++.|+....   +++|.           .+|.++.|++-.+....+.+....
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            3788888877766655421    12455666654332   23332           234566666544443222322211


Q ss_pred             CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717          295 KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~  374 (437)
                       -.+.+  .+..|-+.++++| ....+++||+-..+......  ...-...|..+.+.+..+++|...-.+.++..+...
T Consensus       934 -~~~~v--~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e--~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~ 1007 (1205)
T KOG1898|consen  934 -IPGPV--GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCE--LKFIPNRISSIQTYGARIVVGDIQESVHFVRYRRED 1007 (1205)
T ss_pred             -CCccc--eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhh--hccCceEEEEEeecceEEEEeeccceEEEEEEecCC
Confidence             22344  4455655566665 45689999997654333222  222456788888889999999887777766655433


Q ss_pred             CeeeeeeecC--CCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          375 RFGCLAVLEG--HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       375 ~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                        ..+..+..  -...|+++.+-..+      .++.+..=|.+.+-++...
T Consensus      1008 --n~l~~fadD~~pR~Vt~~~~lD~~------tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1008 --NQLIVFADDPVPRHVTALELLDYD------TVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred             --CeEEEEeCCCccceeeEEEEecCC------ceeeccccCcEEEEECCCc
Confidence              23333332  23457777776665      4777777788777776543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.63  E-value=0.77  Score=26.41  Aligned_cols=35  Identities=11%  Similarity=0.060  Sum_probs=26.6

Q ss_pred             CCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          387 KPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       387 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      +.|.++.|+|....  ..+|+-+-.-|.|.++|++.+
T Consensus         1 GAvR~~kFsP~~~~--~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGG--NDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCc--ccEEEEEccCCeEEEEEcccC
Confidence            46889999976540  027777777899999999964

It contains a characteristic DLL sequence motif.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=91.47  E-value=8.1  Score=32.91  Aligned_cols=187  Identities=13%  Similarity=0.060  Sum_probs=100.1

Q ss_pred             cEEEEEe-CC-CeEEEEECCC--cEEEEECCCcceEEEeecc-cccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccce
Q 013717          214 AVTGLAV-NN-GLIYSVSWDK--SLKIWRASDLRCLESIKAH-EDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHA  288 (437)
Q Consensus       214 ~v~~~~~-~~-~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  288 (437)
                      -...+.+ .. .++-+.+.-|  .|+.+|+.+++......-. .---..++...+.-....-.++...+||..+-    +
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl----~  121 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTL----K  121 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTT----E
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccc----e
Confidence            4457777 54 4445555555  6999999999887665521 22223344443322555567899999987643    3


Q ss_pred             eeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccc-ccceEEEEeeCCEEE-EEeCCCcEE
Q 013717          289 LIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH-GKAILCLINVAGLLM-SGSADRTVR  366 (437)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~l~-~~~~dg~i~  366 (437)
                      .+.++. ..+.-..++  .||+.|+.......++++|..+.+....+.-...+. -..+..+.+-+..|. =.=....|.
T Consensus       122 ~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~  198 (264)
T PF05096_consen  122 KIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIV  198 (264)
T ss_dssp             EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEE
T ss_pred             EEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEE
Confidence            455554 234455666  467788888788899999988765433332221111 112344555444333 233344566


Q ss_pred             EeeCCCCCCeeee------eeec------CCCCCeeEEEEEccCCCCceEEEEEecC
Q 013717          367 IWQRGSDGRFGCL------AVLE------GHTKPVKSLTAVTEEGQNGVVSVFSGSL  411 (437)
Q Consensus       367 iwd~~~~~~~~~~------~~~~------~h~~~v~~l~~~~~~~~~~~~~l~s~~~  411 (437)
                      ..|..++.....+      ....      ...+-.+.||+.|..+    ++++||=.
T Consensus       199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~----~l~vTGK~  251 (264)
T PF05096_consen  199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD----RLFVTGKL  251 (264)
T ss_dssp             EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT----EEEEEETT
T ss_pred             EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC----EEEEEeCC
Confidence            6666666521111      1000      1135689999999876    48888744

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=90.87  E-value=12  Score=33.67  Aligned_cols=57  Identities=16%  Similarity=0.165  Sum_probs=35.3

Q ss_pred             EEEEEeCCCcEEEeeCCCCCCeeeeee-ecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEE
Q 013717          355 LLMSGSADRTVRIWQRGSDGRFGCLAV-LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIR  416 (437)
Q Consensus       355 ~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  416 (437)
                      ++++.-..+.|....++.+........ +......+..|++.|++.     ++++-+.+|.|.
T Consensus       273 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~-----Lyv~~d~~G~iy  330 (331)
T PF07995_consen  273 LFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA-----LYVSDDSDGKIY  330 (331)
T ss_dssp             EEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE-----EEEEE-TTTTEE
T ss_pred             EEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe-----EEEEECCCCeEe
Confidence            555555566788777765442222333 334455899999999984     666666788774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.09  E-value=4.4  Score=37.66  Aligned_cols=79  Identities=13%  Similarity=0.041  Sum_probs=48.7

Q ss_pred             cEEEEEEecCCe-EEEEeCCCeEEEecC-----CCCcccceee---EE-------ee-CccccEEEEEEccCC---CEEE
Q 013717          254 AVNAVAVSAGGT-VYTGSADRKIRVWAK-----PFNEKRHALI---AT-------LE-KHKSAVNALALSDDG---TVLF  313 (437)
Q Consensus       254 ~v~~~~~~~~~~-l~~~~~dg~v~iwd~-----~~~~~~~~~~---~~-------~~-~~~~~i~~~~~~~~~---~~l~  313 (437)
                      .|..+..++.|. ++..+.+|.+.++=.     ..-...++..   ++       +. ...-.+..++|+|+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            467777888888 788888887776521     1000111111   11       10 112245678899975   5777


Q ss_pred             EEeCCCcEEEEECCCCccc
Q 013717          314 SGACDRSILVWDREDSANH  332 (437)
Q Consensus       314 ~~~~dg~i~i~d~~~~~~~  332 (437)
                      .-+.|..|++||+......
T Consensus       185 iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEecCcEEEEEecCCcchh
Confidence            8888999999999865443

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.84  E-value=4.8  Score=41.77  Aligned_cols=146  Identities=16%  Similarity=0.243  Sum_probs=86.7

Q ss_pred             EECCCcEEEEECCCcceEEEeecccccEEEEEEe-c-------CCe-EEEEeCCCeEEEecCCCCccccee-----eEEe
Q 013717          228 VSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVS-A-------GGT-VYTGSADRKIRVWAKPFNEKRHAL-----IATL  293 (437)
Q Consensus       228 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~-------~~~-l~~~~~dg~v~iwd~~~~~~~~~~-----~~~~  293 (437)
                      .+-|+.+.+|+.+++.....+.+.+..|..+..- |       .=+ +++...--.|.++-+..+......     ...+
T Consensus        95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i  174 (1311)
T KOG1900|consen   95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI  174 (1311)
T ss_pred             EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence            4568899999999987777777777777777643 2       112 444444455666644322221111     1122


Q ss_pred             eCccccEEEEEEccCCCEEEEEeCCCcEEEE--ECCCC---c-cce-------------EEeeeecccccceEEEEeeCC
Q 013717          294 EKHKSAVNALALSDDGTVLFSGACDRSILVW--DREDS---A-NHM-------------VVTGALRGHGKAILCLINVAG  354 (437)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~--d~~~~---~-~~~-------------~~~~~~~~~~~~i~~~~~~~~  354 (437)
                      .-.+..|+++....+|+.+++| .||.|+=.  ....+   + +..             .+......+..+|..+..+..
T Consensus       175 ~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S  253 (1311)
T KOG1900|consen  175 SVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS  253 (1311)
T ss_pred             ecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence            2335678899988889877766 56644322  21111   0 000             011111245667877777654


Q ss_pred             --EEEEEeCCCcEEEeeCCCCC
Q 013717          355 --LLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       355 --~l~~~~~dg~i~iwd~~~~~  374 (437)
                        .+.+-++.|+|.+||+....
T Consensus       254 R~IlY~lsek~~v~~Y~i~~~G  275 (1311)
T KOG1900|consen  254 RNILYVLSEKGTVSAYDIGGNG  275 (1311)
T ss_pred             cceeeeeccCceEEEEEccCCC
Confidence              88999999999999998744

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.71  E-value=0.063  Score=48.57  Aligned_cols=226  Identities=10%  Similarity=0.084  Sum_probs=121.2

Q ss_pred             EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECC
Q 013717          155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWD  231 (437)
Q Consensus       155 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~d  231 (437)
                      ++.++.+..+..||-....... .                               ...+....++|+.   ..++.+-..
T Consensus        49 lavaca~tiv~~YD~agq~~le-~-------------------------------n~tg~aldm~wDkegdvlavlAek~   96 (615)
T KOG2247|consen   49 LAVACANTIVIYYDKAGQVILE-L-------------------------------NPTGKALDMAWDKEGDVLAVLAEKT   96 (615)
T ss_pred             eehhhhhhHHHhhhhhcceecc-c-------------------------------CCchhHhhhhhccccchhhhhhhcC
Confidence            8888888888888865332111 1                               1223344555554   455566778


Q ss_pred             CcEEEEECCCcceEEEee-cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC
Q 013717          232 KSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG  309 (437)
Q Consensus       232 g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  309 (437)
                      +.+.+||+.+... +.+. +....-.-+.|++.+. ++.+...|.+.+++.....    .+...-.|...++++++.+.+
T Consensus        97 ~piylwd~n~eyt-qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR----~iiv~Gkh~RRgtq~av~lEd  171 (615)
T KOG2247|consen   97 GPIYLWDVNSEYT-QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSR----RIIVMGKHQRRGTQIAVTLED  171 (615)
T ss_pred             CCeeechhhhhhH-HHHhccCcchHHHHhhccCCccccccccccceEEEeccchh----hhhhhcccccceeEEEecccc
Confidence            9999999976422 2222 1111122267888777 8888899999999764332    222233378889999999877


Q ss_pred             CEEEEEeCCCcEEEEECCCCccceEEee----eecccccceEEEEeeCCEEEEEeCCC-cEEEeeCCCCCCeeeeeeecC
Q 013717          310 TVLFSGACDRSILVWDREDSANHMVVTG----ALRGHGKAILCLINVAGLLMSGSADR-TVRIWQRGSDGRFGCLAVLEG  384 (437)
Q Consensus       310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~  384 (437)
                       +.+.++.|..+.+-...+..-.....+    ...+|-..+..+.-.+..+...-... .+..=.+........+ .++.
T Consensus       172 -~vil~dcd~~L~v~~qegeta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval-~fq~  249 (615)
T KOG2247|consen  172 -YVILCDCDNTLSVTTQEGETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVAL-QFQE  249 (615)
T ss_pred             -eeeecCcHHHHHHhhhccceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccce-Eeee
Confidence             455555666554433322211110000    01111222222222233333221111 1111122221212233 5666


Q ss_pred             CCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          385 HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       385 h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      ..+-+.+..|.-|+      +|.-+.+-|.|..-.+.+++.
T Consensus       250 ~~gni~cyrwylDg------~i~igf~ag~iV~iS~h~aeL  284 (615)
T KOG2247|consen  250 KYGNIHCYRWYLDG------YILIGFDAGYIVSISAHNAEL  284 (615)
T ss_pred             cCCceeEEEEeccc------cccccccceeEEEEeccchHH
Confidence            67789999999987      566676667776666655544

>PLN02153 epithiospecifier protein

Probab=89.39  E-value=16  Score=32.97  Aligned_cols=154  Identities=12%  Similarity=0.113  Sum_probs=69.6

Q ss_pred             EeCCCeEEEEECC-------CcEEEEECCCcceEEEee-cccccE----EEEEEecCCe-EEEEeCC-----CeEEEecC
Q 013717          219 AVNNGLIYSVSWD-------KSLKIWRASDLRCLESIK-AHEDAV----NAVAVSAGGT-VYTGSAD-----RKIRVWAK  280 (437)
Q Consensus       219 ~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~-~~~~~v----~~~~~~~~~~-l~~~~~d-----g~v~iwd~  280 (437)
                      .....+++.|+.+       ..+.+||+.+.+-...-. ......    .+++.. +++ ++.|+.+     ..+.+||.
T Consensus        30 ~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~  108 (341)
T PLN02153         30 VVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV-GTKLYIFGGRDEKREFSDFYSYDT  108 (341)
T ss_pred             EECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE-CCEEEEECCCCCCCccCcEEEEEC
Confidence            3344556666653       357888887754322111 000110    112222 455 6666653     35677877


Q ss_pred             CCCcccceeeEEeeC----ccccEEEEEEccCCCEEEEEeCC-----------CcEEEEECCCCccceEEeeeec---cc
Q 013717          281 PFNEKRHALIATLEK----HKSAVNALALSDDGTVLFSGACD-----------RSILVWDREDSANHMVVTGALR---GH  342 (437)
Q Consensus       281 ~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~---~~  342 (437)
                      .++  .+..+..+..    ....-.+++. -++++++.|+.+           ..+.+||..+.+  +.......   ..
T Consensus       109 ~t~--~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~--W~~l~~~~~~~~~  183 (341)
T PLN02153        109 VKN--EWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK--WVQLPDPGENFEK  183 (341)
T ss_pred             CCC--EEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCCe--EeeCCCCCCCCCC
Confidence            543  3333322210    0111112222 356666666653           247788887643  22211110   11


Q ss_pred             ccceEEEEeeCCEEEEEeCC-------------CcEEEeeCCCCCCeeee
Q 013717          343 GKAILCLINVAGLLMSGSAD-------------RTVRIWQRGSDGRFGCL  379 (437)
Q Consensus       343 ~~~i~~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~~~~~~  379 (437)
                      ..........+.+++.|+.+             ..+.+||..+.+ +..+
T Consensus       184 r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~-W~~~  232 (341)
T PLN02153        184 RGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK-WTEV  232 (341)
T ss_pred             CCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCc-EEec
Confidence            11112233455555555432             458889988654 4433

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=89.39  E-value=4.7  Score=32.12  Aligned_cols=37  Identities=14%  Similarity=0.024  Sum_probs=29.4

Q ss_pred             CCeeEEEEEccCCC-CceEEEEEecCCCcEEEEeeccC
Q 013717          387 KPVKSLTAVTEEGQ-NGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       387 ~~v~~l~~~~~~~~-~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      ..|..++|+|.|-. .++-+|+....+|.|.||.-...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            47999999997632 34568999999999999986643

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PLN02153 epithiospecifier protein

Probab=89.38  E-value=16  Score=32.97  Aligned_cols=27  Identities=15%  Similarity=0.051  Sum_probs=16.2

Q ss_pred             EEEeCCCeEEEEECC-----CcEEEEECCCcc
Q 013717          217 GLAVNNGLIYSVSWD-----KSLKIWRASDLR  243 (437)
Q Consensus       217 ~~~~~~~~l~~~~~d-----g~i~iwd~~~~~  243 (437)
                      .+.+...+++.|+.+     ..+.+||..+.+
T Consensus        81 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~  112 (341)
T PLN02153         81 MVAVGTKLYIFGGRDEKREFSDFYSYDTVKNE  112 (341)
T ss_pred             EEEECCEEEEECCCCCCCccCcEEEEECCCCE
Confidence            344444666666643     357788887654

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=89.27  E-value=3  Score=33.27  Aligned_cols=31  Identities=19%  Similarity=0.197  Sum_probs=25.4

Q ss_pred             ccEEEEEEccCC------CEEEEEeCCCcEEEEECCC
Q 013717          298 SAVNALALSDDG------TVLFSGACDRSILVWDRED  328 (437)
Q Consensus       298 ~~i~~~~~~~~~------~~l~~~~~dg~i~i~d~~~  328 (437)
                      ..+..++|||-|      -+|++.+.+|.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378999999943      3788889999999998754

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=89.11  E-value=9.9  Score=35.37  Aligned_cols=138  Identities=12%  Similarity=0.062  Sum_probs=77.5

Q ss_pred             EEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe--------EEEEeCCCeEEEecCCCCcccceeeEEeeC-
Q 013717          225 IYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--------VYTGSADRKIRVWAKPFNEKRHALIATLEK-  295 (437)
Q Consensus       225 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--------l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-  295 (437)
                      +..|+....++-.|++.|+.+..+..+..-  -+.|.|+.+        -++|-.+..|.-.|.+........ ...+. 
T Consensus       483 ~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v-~esKdY  559 (776)
T COG5167         483 YLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV-VESKDY  559 (776)
T ss_pred             EecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee-eeehhc
Confidence            334556667888889999999999866654  567777542        344555556655565543321111 11111 


Q ss_pred             -ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEe--eCCEEEEEeCCCcEEEeeCC
Q 013717          296 -HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLIN--VAGLLMSGSADRTVRIWQRG  371 (437)
Q Consensus       296 -~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~dg~i~iwd~~  371 (437)
                       ......+..-... .++++|+..|.|++||--.-.    ....+.+....|..+..  +|.++++.+. .++.+-|++
T Consensus       560 ~tKn~Fss~~tTes-GyIa~as~kGDirLyDRig~r----AKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         560 KTKNKFSSGMTTES-GYIAAASRKGDIRLYDRIGKR----AKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             cccccccccccccC-ceEEEecCCCceeeehhhcch----hhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence             1222333333333 499999999999999953322    22234455556655544  4565544433 345565553

>PLN02193 nitrile-specifier protein

Probab=88.25  E-value=24  Score=33.56  Aligned_cols=55  Identities=13%  Similarity=0.131  Sum_probs=28.8

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcc-cEEEEEEeCCe-EEEEecC-----CeEEEEeCCCCc
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSG-SVKSVTFCDGK-IFTAHQD-----CKIRVWQLTPTK  173 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~-l~s~~~d-----g~i~iwd~~~~~  173 (437)
                      .+.+||+.+..|......... .... .-.+++..++. ++.|+.+     ..+..+|+.+.+
T Consensus       194 ~v~~yD~~~~~W~~~~~~g~~-P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~  255 (470)
T PLN02193        194 HLYVFDLETRTWSISPATGDV-PHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE  255 (470)
T ss_pred             cEEEEECCCCEEEeCCCCCCC-CCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence            477899988877754332100 1101 11233334555 5666654     357777877654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=88.05  E-value=21  Score=32.64  Aligned_cols=103  Identities=19%  Similarity=0.301  Sum_probs=56.9

Q ss_pred             CcEEEEEeCC-CeEEEEE------------CCC-cEEEEECCC--cc--eEEEeecccccEEEEEEecCCeEEEEeCCCe
Q 013717          213 DAVTGLAVNN-GLIYSVS------------WDK-SLKIWRASD--LR--CLESIKAHEDAVNAVAVSAGGTVYTGSADRK  274 (437)
Q Consensus       213 ~~v~~~~~~~-~~l~~~~------------~dg-~i~iwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~  274 (437)
                      .....|++++ ..|+++.            ..+ .|.+++-.+  ++  ....+.........+++.+++ ++++.....
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i   92 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDI   92 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeE
Confidence            3456788887 4455553            223 677776543  22  223333334456889999888 666665544


Q ss_pred             EEEecCCCCc----ccceeeEEeeC----ccccEEEEEEccCCCEEEEEe
Q 013717          275 IRVWAKPFNE----KRHALIATLEK----HKSAVNALALSDDGTVLFSGA  316 (437)
Q Consensus       275 v~iwd~~~~~----~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~  316 (437)
                      .++.|...+.    ....++..+..    +......++|.|||.+.++-+
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            4454554322    11122222322    134577899999998666544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=87.97  E-value=11  Score=33.80  Aligned_cols=53  Identities=17%  Similarity=0.225  Sum_probs=35.8

Q ss_pred             cEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEe----eCccccEEEEEEccC
Q 013717          254 AVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATL----EKHKSAVNALALSDD  308 (437)
Q Consensus       254 ~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~  308 (437)
                      .-++|+|.|+|+++++...|.|++++.. +.. ...+...    .........++++|+
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~-g~~-~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVDKD-GSL-KTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEETT-TEE-CEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEeCC-CcC-cceecccccccccccCCcccceeccc
Confidence            3578999999998888889999999832 221 1222222    234567899999994

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=87.81  E-value=9.7  Score=28.52  Aligned_cols=101  Identities=13%  Similarity=0.163  Sum_probs=60.5

Q ss_pred             CeEEEEECCCcEEEEECCCc--------ceEEEeecccccEEEEEEec----CCe-EEEEeCCCeEEEecCCCCccccee
Q 013717          223 GLIYSVSWDKSLKIWRASDL--------RCLESIKAHEDAVNAVAVSA----GGT-VYTGSADRKIRVWAKPFNEKRHAL  289 (437)
Q Consensus       223 ~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~----~~~-l~~~~~dg~v~iwd~~~~~~~~~~  289 (437)
                      ..|+.++..|+|.|++....        ..+..+. ....|++|+-.+    ++. ++.-+....|..||+..+....  
T Consensus        11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~F--   87 (136)
T PF14781_consen   11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLF--   87 (136)
T ss_pred             eeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhh--
Confidence            56788888899999987643        2344443 566788887654    233 4444555689999997654211  


Q ss_pred             eEEeeCccccEEEEEEcc----CCCEEEEEeCCCcEEEEECCCCc
Q 013717          290 IATLEKHKSAVNALALSD----DGTVLFSGACDRSILVWDREDSA  330 (437)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~  330 (437)
                         ++.-...++++.+-.    +..++++| .+-.|.-||....+
T Consensus        88 ---yke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e  128 (136)
T PF14781_consen   88 ---YKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNE  128 (136)
T ss_pred             ---hhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcE
Confidence               122345666666632    23344444 45667777765443

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=87.76  E-value=20  Score=32.05  Aligned_cols=63  Identities=13%  Similarity=0.091  Sum_probs=31.6

Q ss_pred             eCCCeEEEEEC-----CCcEEEEECCCcceEE--EeecccccEEEEEEecCCe-EEEEeCCC----eEEEecCCCC
Q 013717          220 VNNGLIYSVSW-----DKSLKIWRASDLRCLE--SIKAHEDAVNAVAVSAGGT-VYTGSADR----KIRVWAKPFN  283 (437)
Q Consensus       220 ~~~~~l~~~~~-----dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~-l~~~~~dg----~v~iwd~~~~  283 (437)
                      +...+.+.|+.     ...+..||+.+.+-..  .+.. .......+..-+++ .+.|+.++    .+.+||..++
T Consensus       122 ~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~  196 (323)
T TIGR03548       122 KDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN  196 (323)
T ss_pred             ECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence            34455556653     2458888887654322  1211 11122222233566 67777654    2457777543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=87.75  E-value=14  Score=30.16  Aligned_cols=123  Identities=9%  Similarity=-0.019  Sum_probs=66.0

Q ss_pred             eeeecCccCC--eEEEEee-CCEEEEEec--C-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCe
Q 013717           91 NSVQLGHKLP--IGCIAVH-HNFLYAASS--H-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCK  163 (437)
Q Consensus        91 ~~~~~~h~~~--V~~l~~~-~~~l~s~~~--d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~  163 (437)
                      .+....|...  -..+.+. |.++.+.+.  . .|++||+.+++......+....-...   .+.-..+. ..-.=.+|.
T Consensus        36 vi~~yphDs~sfTQGL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgE---Git~~gd~~y~LTw~egv  112 (262)
T COG3823          36 VIRTYPHDSTSFTQGLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGE---GITKLGDYFYQLTWKEGV  112 (262)
T ss_pred             EEEeccCchhhhhcceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCcccccc---ceeeccceEEEEEeccce
Confidence            3344445432  2345555 666666653  2 99999999875544444421000111   12222333 223335677


Q ss_pred             EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcc
Q 013717          164 IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLR  243 (437)
Q Consensus       164 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~  243 (437)
                      -..+|.++-+......                               ..+.=+.++.+...|+.+....+++.-|.++..
T Consensus       113 af~~d~~t~~~lg~~~-------------------------------y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa  161 (262)
T COG3823         113 AFKYDADTLEELGRFS-------------------------------YEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFA  161 (262)
T ss_pred             eEEEChHHhhhhcccc-------------------------------cCCcceeeecCCcceEeeCCceEEEecCHHHhh
Confidence            7788887765443332                               344556677766556666666677777776654


Q ss_pred             eEEE
Q 013717          244 CLES  247 (437)
Q Consensus       244 ~~~~  247 (437)
                      ...+
T Consensus       162 ~~~~  165 (262)
T COG3823         162 ELDT  165 (262)
T ss_pred             hcce
Confidence            4433

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=87.72  E-value=27  Score=33.58  Aligned_cols=232  Identities=9%  Similarity=0.124  Sum_probs=105.6

Q ss_pred             cccccccCCCceeEEecCCCcce--eeeecCc-cCCeEEEEee-CC--EEEEEecC---eEEEEeCCCCceeeeeccccC
Q 013717           68 VPSLQKLSPDETINFSSASHLCI--NSVQLGH-KLPIGCIAVH-HN--FLYAASSH---EINVYDRTGTTWTSINTFNDN  138 (437)
Q Consensus        68 ~~~~~s~s~dg~i~~~~~~~~~~--~~~~~~h-~~~V~~l~~~-~~--~l~s~~~d---~v~vwd~~~~~~~~~~~~~~~  138 (437)
                      ...+.-...+|.+.+........  .+..++. .....++.+- ..  +|+.|+..   .+.-|.  ....+.+..+   
T Consensus       222 ~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~--~~~l~~~~~~---  296 (504)
T PF10433_consen  222 GDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQIS--LSNLEVLDSL---  296 (504)
T ss_dssp             SSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEE--SESEEEEEEE---
T ss_pred             CCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEe--CCCcEEEEec---
Confidence            33445466788888777755442  2333355 6667777777 55  88888855   444455  4336666665   


Q ss_pred             CCCcccEEEEEEeCC------------eEEEEe---cCCeEEEEeCCCCcc--cccccccCccccceeeecCC---CCee
Q 013717          139 DSSSGSVKSVTFCDG------------KIFTAH---QDCKIRVWQLTPTKH--HKLKTTLPTVNDRLLRFMLP---NSYV  198 (437)
Q Consensus       139 ~~h~~~v~~l~~~~~------------~l~s~~---~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~  198 (437)
                       ..-++|..++..+.            .+++++   .+|.+++..-.-+-.  ......++. ....+.+-..   +.++
T Consensus       297 -~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~l  374 (504)
T PF10433_consen  297 -PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYL  374 (504)
T ss_dssp             -----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEE
T ss_pred             -cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEE
Confidence             35678888888521            556554   578888875422211  111111111 1111111111   2333


Q ss_pred             EEeeccceeeec-----CCCcEEEEE---e--CCCeEEEEEC---------CCcEEEEECCCcceEEEeecc-cccEEEE
Q 013717          199 TVRRHKKKLWIE-----HGDAVTGLA---V--NNGLIYSVSW---------DKSLKIWRASDLRCLESIKAH-EDAVNAV  258 (437)
Q Consensus       199 ~~~~~~~~~~~~-----~~~~v~~~~---~--~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~-~~~v~~~  258 (437)
                      .+.......+..     ..+++..+.   |  +...|+++.-         ...|++.+...++....+... ...|.+.
T Consensus       375 v~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~a  454 (504)
T PF10433_consen  375 VLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVAA  454 (504)
T ss_dssp             EEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SEE
T ss_pred             EEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEEE
Confidence            333222211111     122222221   1  1133333332         234788887777777766533 3344444


Q ss_pred             EEecCCeEEEEeCCCeEEEecCCCCcccceeeEEe-eCccccEEEEEEcc
Q 013717          259 AVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATL-EKHKSAVNALALSD  307 (437)
Q Consensus       259 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~  307 (437)
                      +. .++.++.+..++.+.++.+............. ......|.|+...|
T Consensus       455 ~~-~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  455 SI-NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             EE-SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred             EE-CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence            44 35567777778888888775433211111000 01456777777665

...

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=87.65  E-value=14  Score=34.49  Aligned_cols=139  Identities=13%  Similarity=0.168  Sum_probs=80.2

Q ss_pred             EEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC--------CEEEEEeCCCcEEEEECCCCccceEEeee
Q 013717          267 YTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG--------TVLFSGACDRSILVWDREDSANHMVVTGA  338 (437)
Q Consensus       267 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  338 (437)
                      ..|.....++--|+..+    +.+..+.-|...  -+.|.|+.        +.| +|-.+..|.-.|.+-..........
T Consensus       484 ~dg~~~~kLykmDIErG----kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v~es  556 (776)
T COG5167         484 LDGGERDKLYKMDIERG----KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKVVES  556 (776)
T ss_pred             ecCCCcccceeeecccc----eeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceeeeee
Confidence            34444455555554433    466666655544  56777742        234 4545666666677654433332221


Q ss_pred             --ecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEE
Q 013717          339 --LRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIR  416 (437)
Q Consensus       339 --~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  416 (437)
                        +.+...--........++|+++..|-|++||.-...   ....+.+-...|..|....++..    +|+||-  ..+.
T Consensus       557 KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r---AKtalP~lG~aIk~idvta~Gk~----ilaTCk--~yll  627 (776)
T COG5167         557 KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR---AKTALPGLGDAIKHIDVTANGKH----ILATCK--NYLL  627 (776)
T ss_pred             hhccccccccccccccCceEEEecCCCceeeehhhcch---hhhcCcccccceeeeEeecCCcE----EEEeec--ceEE
Confidence              111111112223334599999999999999976433   34456667788999999998863    555552  4677


Q ss_pred             EEeec
Q 013717          417 AWQVS  421 (437)
Q Consensus       417 iw~~~  421 (437)
                      +-|+.
T Consensus       628 L~d~~  632 (776)
T COG5167         628 LTDVP  632 (776)
T ss_pred             EEecc
Confidence            77754

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=87.64  E-value=3.8  Score=37.30  Aligned_cols=166  Identities=15%  Similarity=0.169  Sum_probs=96.3

Q ss_pred             eecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccc----cEE-EEEEccCCCEEEEEeCCCcE
Q 013717          248 IKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKS----AVN-ALALSDDGTVLFSGACDRSI  321 (437)
Q Consensus       248 ~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~----~i~-~~~~~~~~~~l~~~~~dg~i  321 (437)
                      +......|..+-..|||+ +..-+ ...+.++++....-..+.+  .....+    .|+ .+..-..|.-+++++.||.|
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~-g~~~~v~~L~~r~l~~rkl--~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~v  292 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRT-GSELVVALLDKRSLQIRKL--VDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLV  292 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEec-CCeEEEEeecccccchhhh--hhcCCCchHHHHHHHHHHHhCceeEEEEcCCCce
Confidence            444456677888899999 44433 3788999876433222111  111111    122 12223356778889999998


Q ss_pred             EEE-ECCCCc-cceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc
Q 013717          322 LVW-DREDSA-NHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE  397 (437)
Q Consensus       322 ~i~-d~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~  397 (437)
                      .-| |.+.+. ........+.-....+..+.+..+  -+++-...|++.++.....+   .+- ...--..+.-++++|.
T Consensus       293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~---~lL-~~~~~~~~~~~~~Sp~  368 (733)
T COG4590         293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEK---LLL-FERAYQAPQLVAMSPN  368 (733)
T ss_pred             eeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCc---cee-hhhhhcCcceeeeCcc
Confidence            876 555432 222233333333344555555433  67778888999888766543   111 1112236677889998


Q ss_pred             CCCCceEEEEEecCCCcEEEEeeccCCCC
Q 013717          398 EGQNGVVSVFSGSLDGEIRAWQVSVSCPN  426 (437)
Q Consensus       398 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  426 (437)
                      .+     ++++- +.|.|+++.++...|.
T Consensus       369 ~~-----~Ll~e-~~gki~~~~l~Nr~Pe  391 (733)
T COG4590         369 QA-----YLLSE-DQGKIRLAQLENRNPE  391 (733)
T ss_pred             cc-----hheee-cCCceEEEEecCCCCC
Confidence            85     45544 4678999999887664

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=87.55  E-value=10  Score=28.43  Aligned_cols=109  Identities=12%  Similarity=0.178  Sum_probs=60.6

Q ss_pred             EEecCCe-EEEEeCCCeEEEecCCCCcc----cceeeEEeeCccccEEEEEEcc-----CCCEEEEEeCCCcEEEEECCC
Q 013717          259 AVSAGGT-VYTGSADRKIRVWAKPFNEK----RHALIATLEKHKSAVNALALSD-----DGTVLFSGACDRSILVWDRED  328 (437)
Q Consensus       259 ~~~~~~~-l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~  328 (437)
                      .|..... |++++.-|+|.|++......    ....+..+. -...|++++-.+     +...|+.|+ ...+..||+..
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~   82 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN   82 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence            4444444 88888999999997653221    112233333 455677776544     234677775 45699999987


Q ss_pred             CccceEEeeeecccccceEEEEe-----eCCEEEEEeCCCcEEEeeCCCCC
Q 013717          329 SANHMVVTGALRGHGKAILCLIN-----VAGLLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       329 ~~~~~~~~~~~~~~~~~i~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~  374 (437)
                      ....+..  .   -...+.++.+     .+.-++..+.+..|.-||....+
T Consensus        83 N~d~Fyk--e---~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e  128 (136)
T PF14781_consen   83 NSDLFYK--E---VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE  128 (136)
T ss_pred             Cchhhhh--h---CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence            6543321  1   2233444433     12344444455667777766543

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=87.46  E-value=2  Score=21.88  Aligned_cols=26  Identities=12%  Similarity=0.294  Sum_probs=22.8

Q ss_pred             CcEEEEEeCCCeEEEEECCCcEEEEE
Q 013717          213 DAVTGLAVNNGLIYSVSWDKSLKIWR  238 (437)
Q Consensus       213 ~~v~~~~~~~~~l~~~~~dg~i~iwd  238 (437)
                      ..|.+++..+++++.+...+.+|+|.
T Consensus         2 E~i~aia~g~~~vavaTS~~~lRifs   27 (27)
T PF12341_consen    2 EEIEAIAAGDSWVAVATSAGYLRIFS   27 (27)
T ss_pred             ceEEEEEccCCEEEEEeCCCeEEecC
Confidence            36889999999999999999999973

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=87.45  E-value=24  Score=32.60  Aligned_cols=151  Identities=11%  Similarity=0.087  Sum_probs=82.7

Q ss_pred             EEEEEEecCCeEEEEeCCCeEE-EecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccce
Q 013717          255 VNAVAVSAGGTVYTGSADRKIR-VWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHM  333 (437)
Q Consensus       255 v~~~~~~~~~~l~~~~~dg~v~-iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  333 (437)
                      ...+...+++.++..+..|.+. -||-  +...++.+.  ......+..+.+.+++..++++ .+|.+.. ....+....
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~--~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~  314 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHN--RASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEE  314 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEec--CCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccc
Confidence            4455667787755555555443 3432  111112222  2335678999999999887766 5565543 333332110


Q ss_pred             --EEeee-ecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEe
Q 013717          334 --VVTGA-LRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSG  409 (437)
Q Consensus       334 --~~~~~-~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~  409 (437)
                        .+... .......+..+.+.++ .++.++..|.+.... ..++.+.....-..-....+.+.|.+++      ..+..
T Consensus       315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~------~g~~~  387 (398)
T PLN00033        315 DFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDK------KGFVL  387 (398)
T ss_pred             ccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCC------ceEEE
Confidence              11111 1111234677766644 677777888766654 4455454443223334568899887765      36667


Q ss_pred             cCCCcEEEE
Q 013717          410 SLDGEIRAW  418 (437)
Q Consensus       410 ~~dg~i~iw  418 (437)
                      +.+|.|.-|
T Consensus       388 G~~G~il~~  396 (398)
T PLN00033        388 GNDGVLLRY  396 (398)
T ss_pred             eCCcEEEEe
Confidence            778887655

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=87.02  E-value=40  Score=34.73  Aligned_cols=134  Identities=10%  Similarity=0.043  Sum_probs=73.8

Q ss_pred             CCcEEEEECC-CcceEEEee--cccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEcc
Q 013717          231 DKSLKIWRAS-DLRCLESIK--AHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD  307 (437)
Q Consensus       231 dg~i~iwd~~-~~~~~~~~~--~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~  307 (437)
                      +|.++.|++- .++.+.-+.  .-.+.+.+  +.|....+.++....+++||+.......+.  .++.-...|..+.+. 
T Consensus       911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~A--i~~f~~~~LagvG~~l~~YdlG~K~lLRk~--e~k~~p~~Is~iqt~-  985 (1205)
T KOG1898|consen  911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGA--ICPFQGRVLAGVGRFLRLYDLGKKKLLRKC--ELKFIPNRISSIQTY-  985 (1205)
T ss_pred             CCceEEEEEEecCceeeeeeccCCCccceE--EeccCCEEEEecccEEEEeeCChHHHHhhh--hhccCceEEEEEeec-
Confidence            4557777653 334333322  22344444  455554555566789999998543311111  222234567777765 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEE-eeCCEEEEEeCCCcEEEeeCC
Q 013717          308 DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI-NVAGLLMSGSADRTVRIWQRG  371 (437)
Q Consensus       308 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~l~~~~~dg~i~iwd~~  371 (437)
                       +..+++|...-.+..+-.+...........- .-...++++. .+.+.+|.+..=|.+.+-.+.
T Consensus       986 -~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD-~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen  986 -GARIVVGDIQESVHFVRYRREDNQLIVFADD-PVPRHVTALELLDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             -ceEEEEeeccceEEEEEEecCCCeEEEEeCC-CccceeeEEEEecCCceeeccccCcEEEEECC
Confidence             6688888887777776665544443332221 1223344444 345578877777777776554

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=86.70  E-value=16  Score=29.95  Aligned_cols=151  Identities=10%  Similarity=0.106  Sum_probs=83.7

Q ss_pred             EEEEeCC-CeEEEEECCCcEEEEECC--CcceEEEeecccccEEEEEEecCCe-EEEEeCC---C---eEEEe-cCCCCc
Q 013717          216 TGLAVNN-GLIYSVSWDKSLKIWRAS--DLRCLESIKAHEDAVNAVAVSAGGT-VYTGSAD---R---KIRVW-AKPFNE  284 (437)
Q Consensus       216 ~~~~~~~-~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d---g---~v~iw-d~~~~~  284 (437)
                      ..++..+ +.|+.+...+.|.+|++.  ..+....+. .-+.|..+.++..|. +++--.+   .   .+|+| +.+...
T Consensus        21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~   99 (215)
T PF14761_consen   21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQK   99 (215)
T ss_pred             ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence            3444445 677676788899999987  344555665 447899999999888 6665332   2   56765 222110


Q ss_pred             ccceeeE-Eee---------------------CccccEEEEEEcc-CCCEEEEEeCCCcEEEEECCCCccce---EEe--
Q 013717          285 KRHALIA-TLE---------------------KHKSAVNALALSD-DGTVLFSGACDRSILVWDREDSANHM---VVT--  336 (437)
Q Consensus       285 ~~~~~~~-~~~---------------------~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~--  336 (437)
                      ....++. .+-                     ....++.+++-.| .|+++ .|+ ++++.+|.+.......   .+.  
T Consensus       100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~~~~~~~~~~lDF  177 (215)
T PF14761_consen  100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQTIQSEKFSFLDF  177 (215)
T ss_pred             ccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEEEEecccccEEec
Confidence            0000110 111                     1234667888888 45544 454 4678899875432100   000  


Q ss_pred             -eee-ccc-ccceEEEEeeCCEEEEEeCCCcEEEeeC
Q 013717          337 -GAL-RGH-GKAILCLINVAGLLMSGSADRTVRIWQR  370 (437)
Q Consensus       337 -~~~-~~~-~~~i~~~~~~~~~l~~~~~dg~i~iwd~  370 (437)
                       ..+ .-| ......+++.++++|..+.. .++++.+
T Consensus       178 e~~l~~~~~~~~p~~v~ic~~yiA~~s~~-ev~Vlkl  213 (215)
T PF14761_consen  178 ERSLIDHIDNFKPTQVAICEGYIAVMSDL-EVLVLKL  213 (215)
T ss_pred             hhhhhheecCceEEEEEEEeeEEEEecCC-EEEEEEE
Confidence             000 011 22346677778888877654 4666654

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.66  E-value=13  Score=38.91  Aligned_cols=32  Identities=19%  Similarity=0.327  Sum_probs=24.4

Q ss_pred             cEEEEEeCC--CeEEEEECCCcEEEEECCCcceE
Q 013717          214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCL  245 (437)
Q Consensus       214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~  245 (437)
                      ....++|++  ++++.+...|.|+++-...-+..
T Consensus        37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~   70 (993)
T KOG1983|consen   37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFV   70 (993)
T ss_pred             CCcceeeccccceEEEEEecccEEEecccceEEE
Confidence            445667777  99999999999999986554433

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=86.62  E-value=17  Score=30.18  Aligned_cols=98  Identities=11%  Similarity=0.132  Sum_probs=62.6

Q ss_pred             ccEEEEEEecCCe--EEEEeCCCeEEEecC--CCCcc-cceeeEEeeC----ccccEEEEEEccCCCEEEEEeCCCcEEE
Q 013717          253 DAVNAVAVSAGGT--VYTGSADRKIRVWAK--PFNEK-RHALIATLEK----HKSAVNALALSDDGTVLFSGACDRSILV  323 (437)
Q Consensus       253 ~~v~~~~~~~~~~--l~~~~~dg~v~iwd~--~~~~~-~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i  323 (437)
                      .--+.++|+.+.+  .++-+.+-.|.-||.  .++.. ..+.+..++.    ..-..-.++...+|++.++.-..++|..
T Consensus       158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~  237 (310)
T KOG4499|consen  158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQK  237 (310)
T ss_pred             cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence            3445788887776  566677788877874  32221 1122222222    1112234555668999999989999999


Q ss_pred             EECCCCccceEEeeeecccccceEEEEeeCC
Q 013717          324 WDREDSANHMVVTGALRGHGKAILCLINVAG  354 (437)
Q Consensus       324 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  354 (437)
                      +|..+++....+.    -....+++++|-|.
T Consensus       238 ~dp~tGK~L~eik----lPt~qitsccFgGk  264 (310)
T KOG4499|consen  238 VDPTTGKILLEIK----LPTPQITSCCFGGK  264 (310)
T ss_pred             ECCCCCcEEEEEE----cCCCceEEEEecCC
Confidence            9999998554443    33678899998876

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=86.57  E-value=26  Score=32.10  Aligned_cols=109  Identities=14%  Similarity=0.173  Sum_probs=66.5

Q ss_pred             CCeEEEEECCCcEEEEECCCcceEEEeecc--cccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCcc-c
Q 013717          222 NGLIYSVSWDKSLKIWRASDLRCLESIKAH--EDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHK-S  298 (437)
Q Consensus       222 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~  298 (437)
                      ...++.+..+|.|.-+|..+++.+......  ...+..-.+..+|+++.++.+|.+..+|.+++.    ..-...... -
T Consensus        68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~----~~W~~~~~~~~  143 (370)
T COG1520          68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGT----LVWSRNVGGSP  143 (370)
T ss_pred             CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCc----EEEEEecCCCe
Confidence            367777788999999999998876544322  123333344448889999999988888775444    333333222 1


Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEE
Q 013717          299 AVNALALSDDGTVLFSGACDRSILVWDREDSANHMVV  335 (437)
Q Consensus       299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (437)
                      .+..-..-.++ .+..++.++.+...|..+++..+..
T Consensus       144 ~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~  179 (370)
T COG1520         144 YYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTY  179 (370)
T ss_pred             EEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEE
Confidence            11111222233 3444446788888888877765553

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=86.24  E-value=27  Score=32.05  Aligned_cols=25  Identities=4%  Similarity=-0.041  Sum_probs=14.3

Q ss_pred             EeCCCeEEEEECC-----------CcEEEEECCCcc
Q 013717          219 AVNNGLIYSVSWD-----------KSLKIWRASDLR  243 (437)
Q Consensus       219 ~~~~~~l~~~~~d-----------g~i~iwd~~~~~  243 (437)
                      .....+.+.|+.+           ..+..||..+.+
T Consensus        82 ~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~  117 (376)
T PRK14131         82 FIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS  117 (376)
T ss_pred             EECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE
Confidence            3444556666543           247778877654

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.16  E-value=6.7  Score=38.15  Aligned_cols=34  Identities=32%  Similarity=0.525  Sum_probs=25.3

Q ss_pred             ccEEEEEEcc----CCCEEEEEeCCCcEEEEECCCCcc
Q 013717          298 SAVNALALSD----DGTVLFSGACDRSILVWDREDSAN  331 (437)
Q Consensus       298 ~~i~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~  331 (437)
                      .....++++.    +..++++.+.|+++++||+.++..
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence            3455566655    677999999999999999998875

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=86.03  E-value=40  Score=33.87  Aligned_cols=34  Identities=12%  Similarity=0.227  Sum_probs=28.7

Q ss_pred             cCCCcEEEEEeCC-----CeEEEEECCCcEEEEECCCcc
Q 013717          210 EHGDAVTGLAVNN-----GLIYSVSWDKSLKIWRASDLR  243 (437)
Q Consensus       210 ~~~~~v~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~  243 (437)
                      .+...|..+.|+|     ..|+.-..|+++|+||+...+
T Consensus       144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence            4567899999998     789999999999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=85.71  E-value=18  Score=29.65  Aligned_cols=139  Identities=12%  Similarity=0.204  Sum_probs=74.6

Q ss_pred             EEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC------cEEEE-ECCCC
Q 013717          257 AVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR------SILVW-DREDS  329 (437)
Q Consensus       257 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~i~-d~~~~  329 (437)
                      .+.-.+.+.|+.+...+.|.+|++.  ....+.+..+. .-+.|..+.++..|+||++--.+.      .+++| +++..
T Consensus        22 ~~c~~g~d~Lfva~~g~~Vev~~l~--~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~   98 (215)
T PF14761_consen   22 AVCCGGPDALFVAASGCKVEVYDLE--QEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ   98 (215)
T ss_pred             eeeccCCceEEEEcCCCEEEEEEcc--cCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh
Confidence            3333333345555777889999997  33345555665 348899999999999999864432      44554 23221


Q ss_pred             ccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEe
Q 013717          330 ANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSG  409 (437)
Q Consensus       330 ~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~  409 (437)
                      .          ....++ ++..-|. -++++..+..       +.+. .+-++. -..++.+++.+|..+.     |+.|
T Consensus        99 ~----------~~~~~v-~vRiaG~-~v~~~~~~~~-------~~ql-eiiElP-l~~~p~ciaCC~~tG~-----LlVg  152 (215)
T PF14761_consen   99 K----------EENSPV-RVRIAGH-RVTPSFNESS-------KDQL-EIIELP-LSEPPLCIACCPVTGN-----LLVG  152 (215)
T ss_pred             c----------ccCCcE-EEEEccc-ccccCCCCcc-------ccce-EEEEec-CCCCCCEEEecCCCCC-----EEEE
Confidence            0          001111 1110010 0111111111       1111 122222 2567889999998765     5555


Q ss_pred             cCCCcEEEEeeccCCC
Q 013717          410 SLDGEIRAWQVSVSCP  425 (437)
Q Consensus       410 ~~dg~i~iw~~~~~~~  425 (437)
                      + ++.+.+|.+.....
T Consensus       153 ~-~~~l~lf~l~~~~~  167 (215)
T PF14761_consen  153 C-GNKLVLFTLKYQTI  167 (215)
T ss_pred             c-CCEEEEEEEEEEEE
Confidence            4 45899999877654

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=85.61  E-value=23  Score=30.76  Aligned_cols=118  Identities=9%  Similarity=0.207  Sum_probs=65.1

Q ss_pred             CCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe------CCCcEEEEECCCCccceEEeeee-ccccc
Q 013717          272 DRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA------CDRSILVWDREDSANHMVVTGAL-RGHGK  344 (437)
Q Consensus       272 dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~-~~~~~  344 (437)
                      -..|++||....+  +.  ..-.+-.+.|+.+.|..+.+++++|.      ....+..||+.+.... .+.... ..-.+
T Consensus        15 C~~lC~yd~~~~q--W~--~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipg   89 (281)
T PF12768_consen   15 CPGLCLYDTDNSQ--WS--SPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPG   89 (281)
T ss_pred             CCEEEEEECCCCE--ee--cCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCC
Confidence            4579999875432  22  22223567899999987777777764      3557888998765321 111101 11235


Q ss_pred             ceEEEEee---CC-EEEEEe-CCCc--EEEeeCCCCCCeeeeee-ecCCCCCeeEEEEEcc
Q 013717          345 AILCLINV---AG-LLMSGS-ADRT--VRIWQRGSDGRFGCLAV-LEGHTKPVKSLTAVTE  397 (437)
Q Consensus       345 ~i~~~~~~---~~-~l~~~~-~dg~--i~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~~~~  397 (437)
                      ++..+.+.   .. +.+.|. .+|.  |..||-   ..|..+.. .......|..+.+.+-
T Consensus        90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dG---s~W~~i~~~~~~~~t~I~~l~~~~l  147 (281)
T PF12768_consen   90 PVTALTFISNDGSNFWVAGRSANGSTFLMKYDG---SSWSSIGSDILGSGTTIRGLQVLPL  147 (281)
T ss_pred             cEEEEEeeccCCceEEEeceecCCCceEEEEcC---CceEeccccccCCCCEEEEEEEEec
Confidence            66666663   33 444444 3443  555643   33444444 2333456777777665

>PLN02193 nitrile-specifier protein

Probab=85.17  E-value=35  Score=32.44  Aligned_cols=154  Identities=7%  Similarity=0.016  Sum_probs=72.4

Q ss_pred             EeCCCeEEEEECC-----CcEEEEECCCcceEEEeec----ccccEEEEEEecCCe-EEEEeCCC-----eEEEecCCCC
Q 013717          219 AVNNGLIYSVSWD-----KSLKIWRASDLRCLESIKA----HEDAVNAVAVSAGGT-VYTGSADR-----KIRVWAKPFN  283 (437)
Q Consensus       219 ~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~-l~~~~~dg-----~v~iwd~~~~  283 (437)
                      .+...+++.|+.+     ..+..||+.+.+-...-..    ....-.+++. -+++ ++.|+.++     .+..||+..+
T Consensus       226 ~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~  304 (470)
T PLN02193        226 SIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDK  304 (470)
T ss_pred             EECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCC
Confidence            3444566666654     3578889877543221110    1111122222 2455 66666543     4567776543


Q ss_pred             cccceeeEEee---CccccEEEEEEccCCCEEEEEeCC----CcEEEEECCCCccceEEeeee---cccccceEEEEeeC
Q 013717          284 EKRHALIATLE---KHKSAVNALALSDDGTVLFSGACD----RSILVWDREDSANHMVVTGAL---RGHGKAILCLINVA  353 (437)
Q Consensus       284 ~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~---~~~~~~i~~~~~~~  353 (437)
                      .  +..+....   ...... .++. -+++.++.++.+    ..+.+||+.+.+-  ......   ........+....+
T Consensus       305 ~--W~~~~~~~~~~~~R~~~-~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W--~~~~~~g~~P~~R~~~~~~~~~~  378 (470)
T PLN02193        305 K--WFHCSTPGDSFSIRGGA-GLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKW--TQVETFGVRPSERSVFASAAVGK  378 (470)
T ss_pred             E--EEeCCCCCCCCCCCCCc-EEEE-ECCcEEEEECCCCCccCceEEEECCCCEE--EEeccCCCCCCCcceeEEEEECC
Confidence            2  22221100   011111 1222 256777777655    4589999987542  222111   11111123334455


Q ss_pred             CEEEEEeCC--------------CcEEEeeCCCCCCeeeee
Q 013717          354 GLLMSGSAD--------------RTVRIWQRGSDGRFGCLA  380 (437)
Q Consensus       354 ~~l~~~~~d--------------g~i~iwd~~~~~~~~~~~  380 (437)
                      .+++.|+..              ..+.+||..+.. +..+.
T Consensus       379 ~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~-W~~~~  418 (470)
T PLN02193        379 HIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQ-WERLD  418 (470)
T ss_pred             EEEEECCccCCccccccCccceeccEEEEEcCcCE-EEEcc
Confidence            577777753              247888887654 44333

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=84.73  E-value=3.1  Score=21.21  Aligned_cols=25  Identities=12%  Similarity=0.186  Sum_probs=21.7

Q ss_pred             ceEEEEeeCCEEEEEeCCCcEEEee
Q 013717          345 AILCLINVAGLLMSGSADRTVRIWQ  369 (437)
Q Consensus       345 ~i~~~~~~~~~l~~~~~dg~i~iwd  369 (437)
                      .|.+++..+.+++++..-+.+|+|.
T Consensus         3 ~i~aia~g~~~vavaTS~~~lRifs   27 (27)
T PF12341_consen    3 EIEAIAAGDSWVAVATSAGYLRIFS   27 (27)
T ss_pred             eEEEEEccCCEEEEEeCCCeEEecC
Confidence            5678888888999999999999984

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=84.05  E-value=6.5  Score=38.82  Aligned_cols=75  Identities=16%  Similarity=0.310  Sum_probs=51.3

Q ss_pred             CccCCeEEEEeeCCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecC-CeEEEEeCCCC
Q 013717           96 GHKLPIGCIAVHHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQD-CKIRVWQLTPT  172 (437)
Q Consensus        96 ~h~~~V~~l~~~~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~d-g~i~iwd~~~~  172 (437)
                      --..+|.++++..+.+++..++.|.|+...+  ............|...|+++.+.++++..+-.. ..+++++.++-
T Consensus       624 ~g~lPvrsla~~ed~~was~gG~V~vi~~tt--~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtetl  699 (925)
T KOG3522|consen  624 TGSLPVRSLAFQEDFVWASEGGCVHVIPSTT--FIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTETL  699 (925)
T ss_pred             cCCccccchhhhhceeeeecCCceEEEechh--ccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEeccccc
Confidence            4457889999988888877777999999887  333333333356788999999998884443333 34555555443

>PRK13684 Ycf48-like protein; Provisional

Probab=83.35  E-value=34  Score=30.79  Aligned_cols=155  Identities=8%  Similarity=0.016  Sum_probs=82.4

Q ss_pred             CCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEe-ecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCccccee
Q 013717          212 GDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESI-KAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHAL  289 (437)
Q Consensus       212 ~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  289 (437)
                      ...+.++.+.+ ..++..+..|.+..-.-..++.-..+ ......++++.+.+++.++..+..|.+++=..+ +...++.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d-~G~sW~~  250 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPD-DLESWSK  250 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCC-CCCcccc
Confidence            34677888877 55666666676554211222212222 234567899999999986566677876542122 2223332


Q ss_pred             eEEe-eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEe-eCCEEEEEeCCCcEEE
Q 013717          290 IATL-EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLIN-VAGLLMSGSADRTVRI  367 (437)
Q Consensus       290 ~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~dg~i~i  367 (437)
                      ...- ......+..+.+.+++..++++ .+|.+. .....++. +........-......+.+ +++..+..+..|.|--
T Consensus       251 ~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~t-W~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~  327 (334)
T PRK13684        251 PIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKT-WEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLR  327 (334)
T ss_pred             ccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCC-CeECCcCCCCCcceEEEEEeCCCceEEECCCceEEE
Confidence            2111 0122457889999987765554 667554 34444432 2221110111223444443 4556666778888877


Q ss_pred             eeC
Q 013717          368 WQR  370 (437)
Q Consensus       368 wd~  370 (437)
                      |+-
T Consensus       328 ~~~  330 (334)
T PRK13684        328 YVG  330 (334)
T ss_pred             ecC
Confidence            753

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=82.95  E-value=7.3  Score=37.90  Aligned_cols=70  Identities=17%  Similarity=0.200  Sum_probs=40.0

Q ss_pred             eCCEEEEEeCCCcEEEeeCCC----CCCeeee--------eeec-----------CCCCCeeEEEEEc---cCCCCceEE
Q 013717          352 VAGLLMSGSADRTVRIWQRGS----DGRFGCL--------AVLE-----------GHTKPVKSLTAVT---EEGQNGVVS  405 (437)
Q Consensus       352 ~~~~l~~~~~dg~i~iwd~~~----~~~~~~~--------~~~~-----------~h~~~v~~l~~~~---~~~~~~~~~  405 (437)
                      ++..++.+..||.+.......    +..+...        ..+.           .....+..++...   ++.    .+
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  232 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDD----TF  232 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETT----TE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCC----CE
Confidence            566888888898888877664    1111110        0010           0123445555555   122    28


Q ss_pred             EEEecCCCcEEEEeeccCCC
Q 013717          406 VFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       406 l~s~~~dg~i~iw~~~~~~~  425 (437)
                      |++.+.|+++|+||+.+++.
T Consensus       233 l~tl~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  233 LFTLSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             EEEEETTSEEEEEETTTTCE
T ss_pred             EEEEeCCCeEEEEECCCCeE
Confidence            99999999999999998875

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=82.80  E-value=36  Score=30.72  Aligned_cols=54  Identities=7%  Similarity=0.023  Sum_probs=24.5

Q ss_pred             CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC------CcEEEEECCCC
Q 013717          273 RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD------RSILVWDREDS  329 (437)
Q Consensus       273 g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~  329 (437)
                      ..+.+||..++  .+..+..+......-.+++ ..++++.+.|+.+      ..+.+|++...
T Consensus       168 ~~v~~YDp~t~--~W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~  227 (346)
T TIGR03547       168 KNVLSYDPSTN--QWRNLGENPFLGTAGSAIV-HKGNKLLLINGEIKPGLRTAEVKQYLFTGG  227 (346)
T ss_pred             ceEEEEECCCC--ceeECccCCCCcCCCceEE-EECCEEEEEeeeeCCCccchheEEEEecCC
Confidence            45778877543  3333332221111112222 2356777777653      13455665433

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=82.76  E-value=38  Score=30.86  Aligned_cols=156  Identities=14%  Similarity=0.171  Sum_probs=66.5

Q ss_pred             cCCCcEEEEEeCC---CeEEEEEC---CCc-EEEEECCC-cceEEEeecc--cccEEEEEEecCCe-EEE-Ee-C---CC
Q 013717          210 EHGDAVTGLAVNN---GLIYSVSW---DKS-LKIWRASD-LRCLESIKAH--EDAVNAVAVSAGGT-VYT-GS-A---DR  273 (437)
Q Consensus       210 ~~~~~v~~~~~~~---~~l~~~~~---dg~-i~iwd~~~-~~~~~~~~~~--~~~v~~~~~~~~~~-l~~-~~-~---dg  273 (437)
                      .....+.-+.++|   ..|+-|-+   +.. -|||-+.+ +.....+..+  ...+..=-|.|||. +.. +. .   +.
T Consensus       185 ~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~  264 (386)
T PF14583_consen  185 EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDF  264 (386)
T ss_dssp             EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--E
T ss_pred             ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCce
Confidence            3455666777877   55555533   221 25554432 2223333222  22333445788887 433 22 2   33


Q ss_pred             eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC----------------cEEEEECCCCccceEEee
Q 013717          274 KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR----------------SILVWDREDSANHMVVTG  337 (437)
Q Consensus       274 ~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----------------~i~i~d~~~~~~~~~~~~  337 (437)
                      .|.-+|+.+...  ..+...    .....+--++||++++-=+.|.                -|++++++.+.......+
T Consensus       265 ~i~~~d~~t~~~--~~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h  338 (386)
T PF14583_consen  265 WIAGYDPDTGER--RRLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARH  338 (386)
T ss_dssp             EEEEE-TTT--E--EEEEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-
T ss_pred             EEEeeCCCCCCc--eEEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeec
Confidence            566666654432  112211    1234555678888776533332                466677766543221111


Q ss_pred             e-----eccc---ccceEEEEeeCC-EEEEEeCCCcEEEeeCC
Q 013717          338 A-----LRGH---GKAILCLINVAG-LLMSGSADRTVRIWQRG  371 (437)
Q Consensus       338 ~-----~~~~---~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~  371 (437)
                      .     ..++   ..+-.+++++++ .|+++...|...||-++
T Consensus       339 ~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  339 DTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             ------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred             cCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence            0     1111   123356666666 67777778887777544

>smart00564 PQQ beta-propeller repeat

Probab=82.58  E-value=4.9  Score=21.23  Aligned_cols=26  Identities=27%  Similarity=0.178  Sum_probs=21.8

Q ss_pred             CeEEEEECCCcEEEEECCCcceEEEe
Q 013717          223 GLIYSVSWDKSLKIWRASDLRCLESI  248 (437)
Q Consensus       223 ~~l~~~~~dg~i~iwd~~~~~~~~~~  248 (437)
                      ..++.++.+|.+..+|.++++.+..+
T Consensus         7 ~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        7 GTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            57888899999999999999877653

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.49  E-value=44  Score=31.51  Aligned_cols=76  Identities=13%  Similarity=0.080  Sum_probs=47.6

Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEEC---------CCCccceEEeee-----e--cccccceEEEEeeCC-----EEE
Q 013717          299 AVNALALSDDGTVLFSGACDRSILVWDR---------EDSANHMVVTGA-----L--RGHGKAILCLINVAG-----LLM  357 (437)
Q Consensus       299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~---------~~~~~~~~~~~~-----~--~~~~~~i~~~~~~~~-----~l~  357 (437)
                      .|..+..++.|..++-.+.+|.+.++=.         ++++....+...     +  ....-.+...+|++.     .|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            4678889999999999999996655431         223222211110     0  011223344556654     788


Q ss_pred             EEeCCCcEEEeeCCCCC
Q 013717          358 SGSADRTVRIWQRGSDG  374 (437)
Q Consensus       358 ~~~~dg~i~iwd~~~~~  374 (437)
                      .-+.|..||+||+....
T Consensus       185 iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             EEecCcEEEEEecCCcc
Confidence            88899999999998755

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=82.34  E-value=33  Score=29.89  Aligned_cols=51  Identities=14%  Similarity=0.457  Sum_probs=38.1

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe-CCeEEEEe-------cCCeEEEEeCCCCc
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC-DGKIFTAH-------QDCKIRVWQLTPTK  173 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~-------~dg~i~iwd~~~~~  173 (437)
                      .|++||..+.+|.....     +-.+.|..|.|. .+.|+.++       ....+..||..+..
T Consensus        17 ~lC~yd~~~~qW~~~g~-----~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~   75 (281)
T PF12768_consen   17 GLCLYDTDNSQWSSPGN-----GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT   75 (281)
T ss_pred             EEEEEECCCCEeecCCC-----CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence            89999999987876654     467899999997 55544443       35578889888664

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.06  E-value=39  Score=34.49  Aligned_cols=83  Identities=10%  Similarity=0.102  Sum_probs=48.5

Q ss_pred             ccEE-EEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717          143 GSVK-SVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN  221 (437)
Q Consensus       143 ~~v~-~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  221 (437)
                      ..|. |++-.++.+..|+.+|.+.+|.+...............                 ......  -+..+|..+...
T Consensus        16 ~~vd~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~-----------------~~~~~~--~~kk~i~~l~~~   76 (877)
T KOG2063|consen   16 LEVDLCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTET-----------------VKFEKE--FSKKPINKLLVC   76 (877)
T ss_pred             CccchHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcch-----------------hHHhhh--hccchhHHHhhc
Confidence            3444 66666788999999999999998765432222110000                 000000  124566666666


Q ss_pred             C-CeEEEEECCCcEEEEECCCcce
Q 013717          222 N-GLIYSVSWDKSLKIWRASDLRC  244 (437)
Q Consensus       222 ~-~~l~~~~~dg~i~iwd~~~~~~  244 (437)
                      + ..++..-.|+.|.++++.+.+.
T Consensus        77 ~~~~~ll~l~dsqi~~~~l~~~~~  100 (877)
T KOG2063|consen   77 ASLELLLILSDSQIAVHKLPELEP  100 (877)
T ss_pred             chhcchheecCCcceeeecCcccc
Confidence            5 3344445677888888877655

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=81.74  E-value=44  Score=30.98  Aligned_cols=75  Identities=16%  Similarity=0.189  Sum_probs=44.7

Q ss_pred             EEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCC--------------CceEEEEEecCCC
Q 013717          348 CLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ--------------NGVVSVFSGSLDG  413 (437)
Q Consensus       348 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~--------------~~~~~l~s~~~dg  413 (437)
                      ++++.+.+.++...=|.|.++|+..+.   .++.++|-.+.=-.-....+...              ....+++-+-.-|
T Consensus       314 ~~sP~~~laA~tDslGRV~LiD~~~~~---vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg  390 (415)
T PF14655_consen  314 CLSPSGRLAAVTDSLGRVLLIDVARGI---VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRG  390 (415)
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCh---hhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccCC
Confidence            344445577777777999999999866   55555554432111111111110              1123556667789


Q ss_pred             cEEEEeeccCCC
Q 013717          414 EIRAWQVSVSCP  425 (437)
Q Consensus       414 ~i~iw~~~~~~~  425 (437)
                      .|.||.++.+..
T Consensus       391 ~lEvW~~~~g~R  402 (415)
T PF14655_consen  391 ILEVWSMRQGPR  402 (415)
T ss_pred             eEEEEecCCCCE
Confidence            999999998754

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=81.69  E-value=37  Score=30.03  Aligned_cols=58  Identities=10%  Similarity=0.133  Sum_probs=37.7

Q ss_pred             CEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCC
Q 013717          109 NFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTP  171 (437)
Q Consensus       109 ~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~  171 (437)
                      ++|+.|.++-+.+-++........+.     .+...|.++...+..   ++-++....++.+++..
T Consensus        14 ~~lL~GTe~Gly~~~~~~~~~~~~kl-----~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~   74 (302)
T smart00036       14 KWLLVGTEEGLYVLNISDQPGTLEKL-----IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSA   74 (302)
T ss_pred             cEEEEEeCCceEEEEcccCCCCeEEe-----cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHH
Confidence            58888888877777765421122222     267789999998654   33444445599999853

Unpublished observations.

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=81.24  E-value=77  Score=33.41  Aligned_cols=185  Identities=15%  Similarity=0.198  Sum_probs=102.4

Q ss_pred             CCCcEEEEECCCcceEEEee-cccccEEEEEEe-------cCC-e--EEEEeC---------CCeEEEecCCC----Cc-
Q 013717          230 WDKSLKIWRASDLRCLESIK-AHEDAVNAVAVS-------AGG-T--VYTGSA---------DRKIRVWAKPF----NE-  284 (437)
Q Consensus       230 ~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~-------~~~-~--l~~~~~---------dg~v~iwd~~~----~~-  284 (437)
                      ....|.+.+..+++.+..+. .....|.+++..       ..+ +  +++|..         -|.+++||+-.    .. 
T Consensus      1002 ~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgk 1081 (1366)
T KOG1896|consen 1002 EQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGK 1081 (1366)
T ss_pred             ccceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCC
Confidence            34456666666666554443 122334555442       122 2  666643         48899998632    11 


Q ss_pred             --ccceeeEE-eeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeC
Q 013717          285 --KRHALIAT-LEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSA  361 (437)
Q Consensus       285 --~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~  361 (437)
                        ...+.... .+..+++|..++=- +| +|+++ ...+|.||+++......-..  +-.-..-+.++..-.++|+.|.-
T Consensus      1082 P~t~~KlKel~~eE~KGtVsavceV-~G-~l~~~-~GqKI~v~~l~r~~~ligVa--FiD~~~yv~s~~~vknlIl~gDV 1156 (1366)
T KOG1896|consen 1082 PFTKNKLKELYIEEQKGTVSAVCEV-RG-HLLSS-QGQKIIVRKLDRDSELIGVA--FIDLPLYVHSMKVVKNLILAGDV 1156 (1366)
T ss_pred             CcccceeeeeehhhcccceEEEEEe-cc-EEEEc-cCcEEEEEEeccCCcceeeE--EeccceeEEehhhhhhheehhhh
Confidence              11111111 12345677766633 45 45544 34579999994332221111  11223334445555678888887


Q ss_pred             CCcEEEeeCCCCCCeeeeeeec--CCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          362 DRTVRIWQRGSDGRFGCLAVLE--GHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       362 dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      -..|.+.......  ..+..+.  ...-.+.++.|.-++++   .+++.+..|+.|++|-.....
T Consensus      1157 ~ksisfl~fqeep--~rlsL~srd~~~l~v~s~EFLVdg~~---L~flvsDa~rNi~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1157 MKSISFLGFQEEP--YRLSLLSRDFEPLNVYSTEFLVDGSN---LSFLVSDADRNIHVYMYAPEN 1216 (1366)
T ss_pred             hhceEEEEEccCc--eEEEEeecCCchhhceeeeeEEcCCe---eEEEEEcCCCcEEEEEeCCCC
Confidence            7778777665433  1222222  12336888899888866   789999999999998765543

>PF01011 PQQ: PQQ enzyme repeat family

Probab=80.98  E-value=5.2  Score=22.26  Aligned_cols=26  Identities=19%  Similarity=0.077  Sum_probs=23.0

Q ss_pred             eEEEEECCCcEEEEECCCcceEEEee
Q 013717          224 LIYSVSWDKSLKIWRASDLRCLESIK  249 (437)
Q Consensus       224 ~l~~~~~dg~i~iwd~~~~~~~~~~~  249 (437)
                      .++.++.+|.|.-+|.++|+.+..++
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~   27 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQ   27 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeee
Confidence            46777999999999999999998886

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=80.69  E-value=39  Score=29.63  Aligned_cols=186  Identities=12%  Similarity=0.174  Sum_probs=96.1

Q ss_pred             eEEEEeCCCCceeeeeccccCCC-CcccEEEEEEeC--C----e--EEEEecCCeEEEEeCCCCcccccccccCccccce
Q 013717          118 EINVYDRTGTTWTSINTFNDNDS-SSGSVKSVTFCD--G----K--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRL  188 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~--~----~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  188 (437)
                      .|.+||+.+++......+..... ..+.+..+.+..  +    .  .++=+..+-|.++|+.+++..+............
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            78889999976555555543222 356788888873  1    3  4555566789999999998766655422211111


Q ss_pred             eeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-----CeEEEEECCCcEEEEECCC-----c---------ceEEEee
Q 013717          189 LRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-----GLIYSVSWDKSLKIWRASD-----L---------RCLESIK  249 (437)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~dg~i~iwd~~~-----~---------~~~~~~~  249 (437)
                               ...... ...+. ....+..++..+     +.|+-..-.+. ++|.+.+     .         +.++.+-
T Consensus       115 ---------~~~~i~-g~~~~-~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG  182 (287)
T PF03022_consen  115 ---------GPFTIG-GESFQ-WPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLG  182 (287)
T ss_dssp             ---------EEEEET-TEEEE-ETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEE
T ss_pred             ---------cceecc-CceEe-cCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceecc
Confidence                     111111 11121 223377787765     35555554331 2333221     1         1112221


Q ss_pred             cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc--eeeEEeeCccccEEEEEEcc--CCCEEEEE
Q 013717          250 AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH--ALIATLEKHKSAVNALALSD--DGTVLFSG  315 (437)
Q Consensus       250 ~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~i~~~~~~~--~~~~l~~~  315 (437)
                      ........++++++|. +++--..+.|..|+........  ..+..-...-..+..+.+.+  +|.+.+..
T Consensus       183 ~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  183 DKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             E---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             ccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            1123566788889998 6667778899999876532221  22222121235678888888  66554444

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=80.42  E-value=51  Score=30.84  Aligned_cols=29  Identities=21%  Similarity=0.461  Sum_probs=21.6

Q ss_pred             ceEEEEeeCC--EEEEEeCCCcEEEeeCCCC
Q 013717          345 AILCLINVAG--LLMSGSADRTVRIWQRGSD  373 (437)
Q Consensus       345 ~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~  373 (437)
                      .|..+..++.  .+++.+.+|.|.+|++..+
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~  221 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG  221 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence            3777777654  9999999999999999863

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=80.31  E-value=8  Score=21.49  Aligned_cols=35  Identities=17%  Similarity=0.236  Sum_probs=0.0

Q ss_pred             eEEeeCccccEEEEEEccCCCEEEEEeCC---CcEEEE
Q 013717          290 IATLEKHKSAVNALALSDDGTVLFSGACD---RSILVW  324 (437)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~  324 (437)
                      +..+......-....|+|||++|+-.+..   |.-.||
T Consensus         1 l~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    1 LKQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CcCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	437
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-15
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		3e-15
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		1e-14
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-13
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		6e-13
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-06
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-12
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		4e-12
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		9e-12
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-10
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		5e-10
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		5e-10
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		5e-10
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-10
2g99_A	308	Structural Basis For The Specific Recognition Of Me		6e-10
2h9l_A	329	Wdr5delta23 Length = 329		6e-10
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		7e-10
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		7e-10
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		7e-10
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		8e-10
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		8e-10
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		8e-10
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		9e-10
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		9e-10
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-09
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-09
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-09
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		8e-05
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		7e-09
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		4e-08
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		3e-05
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		4e-08
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		3e-05
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		5e-08
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		7e-08
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		8e-08
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		8e-08
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		8e-08
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		8e-08
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-07
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		4e-07
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		7e-07
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		4e-06
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		4e-06
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		4e-06
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		4e-06
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		4e-06
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		7e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-05
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		4e-05
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-04
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		3e-04
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		6e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		6e-04
3mmy_A	368	Structural And Functional Analysis Of The Interacti		7e-04

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 111/228 (48%), Gaps = 24/228 (10%)
Query: 205 KKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG 264
           K++   H  +V  L  +  +I + S D ++++W  +    L ++  H +AV  +  + G 
Sbjct: 166 KRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM 225
Query: 265 TVYTGSADRKIRVW--AKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSIL 322
            V T S DR I VW  A P +     L   L  H++AVN +   D   V  SG  DR+I 
Sbjct: 226 MV-TCSKDRSIAVWDMASPTD---ITLRRVLVGHRAAVNVVDFDDKYIVSASG--DRTIK 279
Query: 323 VWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFG-CLAV 381
           VW+   S    V T  L GH + I CL     L++SGS+D T+R+W    D   G CL V
Sbjct: 280 VWN--TSTCEFVRT--LNGHKRGIACLQYRDRLVVSGSSDNTIRLW----DIECGACLRV 331
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSSP 429
           LEGH + V+ +    +        + SG+ DG+I+ W +  +    +P
Sbjct: 332 LEGHEELVRCIRFDNKR-------IVSGAYDGKIKVWDLVAALDPRAP 372

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 98/212 (46%), Gaps = 22/212 (10%)
Query: 211 HGD-AVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTG 269
           H D  +T L      I S S D +LK+W A   +CL ++  H   V +  +     + +G
Sbjct: 117 HDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-DNIIISG 175
Query: 270 SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDS 329
           S DR ++VW    N +    I TL  H S V  + L +   V  SG+ D ++ VWD E  
Sbjct: 176 STDRTLKVW----NAETGECIHTLYGHTSTVRCMHLHEKRVV--SGSRDATLRVWDIETG 229
Query: 330 ANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPV 389
               V    L GH  A+ C+      ++SG+ D  V++W   ++    CL  L+GHT  V
Sbjct: 230 QCLHV----LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE---TCLHTLQGHTNRV 282
Query: 390 KSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
            SL       Q   + V SGSLD  IR W V 
Sbjct: 283 YSL-------QFDGIHVVSGSLDTSIRVWDVE 307

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 114/231 (49%), Gaps = 22/231 (9%)
Query: 199 TVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIW--RASDLRCLESIK--AHEDA 254
           +++ +K+K+W            + G++ + S D+ +K+   +  D   ++ +   AH+ A
Sbjct: 9   SLKLYKEKIW--------SFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKA 60
Query: 255 VNAVAVSAGGTVYT-GSADRKIRVWAKPFNEKR---HALIATLEKHKSAVNALALSDDGT 310
           + +VA     ++   GS D  + +WAK  +  R     L+A +E H++ V  +A S+DG 
Sbjct: 61  IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY 120
Query: 311 VLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI--NVAGLLMSGSADRTVRIW 368
            L + + D+S+ +W+ ++S         L+ H + +  +I      LL S S D TVRIW
Sbjct: 121 YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
Query: 369 QRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419
            +  D  + C+AVL GH   V S      E   GV  + SGS D  +R W+
Sbjct: 181 -KDYDDDWECVAVLNGHEGTVWSSDFDKTE---GVFRLCSGSDDSTVRVWK 227

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 134/297 (45%), Gaps = 43/297 (14%)
Query: 142 SGSVKSVTFC-DGK-IFTAHQDCKIRVWQXXXXXXXXXXXXXXXVNDRLLRFMLPNSYVT 199
           S SV+ V F  DG+ I +A  D  +++W                VN    R   P+    
Sbjct: 221 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFR---PDGQTI 277
Query: 200 VRRHKKK---LW----------IEHGDAVTGLAV--NNGLIYSVSWDKSLKIWRASDLRC 244
                 K   LW            H  +V G+A   +   I S S DK++K+W  +  + 
Sbjct: 278 ASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QH 336
Query: 245 LESIKAHEDAVNAVAVSAGG-TVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNAL 303
           L+++  H  +V  VA S  G T+ + S D+ +++W      +   L+ TL  H S+V  +
Sbjct: 337 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQTLTGHSSSVRGV 391
Query: 304 ALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI--LCLINVAGLLMSGSA 361
           A S DG  + S + D+++ +W+R      ++ T  L GH  ++  +        + S S 
Sbjct: 392 AFSPDGQTIASASDDKTVKLWNRN---GQLLQT--LTGHSSSVWGVAFSPDDQTIASASD 446
Query: 362 DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAW 418
           D+TV++W R  +G+   L  L GH+  V+ + A + +GQ    ++ S S D  ++ W
Sbjct: 447 DKTVKLWNR--NGQL--LQTLTGHSSSVRGV-AFSPDGQ----TIASASDDKTVKLW 494

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 108/213 (50%), Gaps = 25/213 (11%)
Query: 211 HGDAVTGLAV--NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG-TVY 267
           H  +V G+A   +   I S S DK++K+W  +  + L+++  H  +V  VA S  G T+ 
Sbjct: 179 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIA 237
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
           + S D+ +++W      +   L+ TL  H S+VN +A   DG  + S + D+++ +W+R 
Sbjct: 238 SASDDKTVKLW-----NRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN 292
Query: 328 DSANHMVVTGALRGHGKAI--LCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGH 385
                ++ T  L GH  ++  +        + S S D+TV++W R  +G+   L  L GH
Sbjct: 293 ---GQLLQT--LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR--NGQH--LQTLTGH 343
Query: 386 TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAW 418
           +  V  + A + +GQ    ++ S S D  ++ W
Sbjct: 344 SSSVWGV-AFSPDGQ----TIASASDDKTVKLW 371

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 16/128 (12%)
Query: 293 LEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI--LCLI 350
           LE H S+V  +A S DG  + S + D+++ +W+R      ++ T  L GH  ++  +   
Sbjct: 12  LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---GQLLQT--LTGHSSSVWGVAFS 66
Query: 351 NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGS 410
                + S S D+TV++W R  +G+   L  L GH+  V+ + A + +GQ    ++ S S
Sbjct: 67  PDGQTIASASDDKTVKLWNR--NGQL--LQTLTGHSSSVRGV-AFSPDGQ----TIASAS 117
Query: 411 LDGEIRAW 418
            D  ++ W
Sbjct: 118 DDKTVKLW 125

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 148/364 (40%), Gaps = 65/364 (17%)
Query: 89  CINSVQLGHKLPIGCIAVHHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGS---- 144
           C+     G  L  GC      +  +  S    + D +       N    N SSS S    
Sbjct: 69  CVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENL---NTSSSPSSDLY 125
Query: 145 VKSVTFC-DGKIF-TAHQDCKIRVWQXXXXXXXXXXXXXXXVNDRLLRFMLPNSYVTVRR 202
           ++SV F  DGK   T  +D  IR+W                + +R +  +L       + 
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWD---------------IENRKIVMIL-------QG 163
Query: 203 HKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA 262
           H++ ++     ++      + L+ S S D++++IW     +C  ++   ED V  VAVS 
Sbjct: 164 HEQDIY-----SLDYFPSGDKLV-SGSGDRTVRIWDLRTGQCSLTLSI-EDGVTTVAVSP 216
Query: 263 GGTVY--TGSADRKIRVWAKPFNEKRHALIATLEK-------HKSAVNALALSDDGTVLF 313
           G   Y   GS DR +RVW    + +   L+  L+        HK +V ++  + DG  + 
Sbjct: 217 GDGKYIAAGSLDRAVRVW----DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 272
Query: 314 SGACDRSILVWDRED--------SANHMVVTGALRGHGKAILCLINVAG--LLMSGSADR 363
           SG+ DRS+ +W+ ++        + N         GH   +L +        ++SGS DR
Sbjct: 273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 332
Query: 364 TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVF-SGSLDGEIRAWQVSV 422
            V  W + S      L +L+GH   V S+            +VF +GS D + R W+   
Sbjct: 333 GVLFWDKKSGNP---LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389
Query: 423 SCPN 426
             PN
Sbjct: 390 IAPN 393

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 101/229 (44%), Gaps = 33/229 (14%)
Query: 214 AVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADR 273
            +T L   +  + + + DK ++++ + + + L  +  H+  V A+  + GG + +GS DR
Sbjct: 124 VITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDR 183
Query: 274 KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLF--SGACDRSILVW------- 324
            +RVW    + K+       E H S V  L + +   + +  +G+ D ++ VW       
Sbjct: 184 TVRVW----DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 239
Query: 325 --DREDSANHMVV----------TGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGS 372
             D  +  ++ +V           G LRGH  ++  +     +++SGS D T+ +W    
Sbjct: 240 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDV-- 297
Query: 373 DGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
             +  CL +L GHT  + S     E  +       S S+D  IR W + 
Sbjct: 298 -AQMKCLYILSGHTDRIYSTIYDHERKR-----CISASMDTTIRIWDLE 340

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 33/229 (14%)
Query: 214 AVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADR 273
            +T L   +  + + + DK ++++ + + + L  +  H+  V A+  + GG + +GS DR
Sbjct: 124 VITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDR 183
Query: 274 KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLF--SGACDRSILVW------- 324
            +RVW    + K+       E H S V  L + +   + +  +G+ D ++ VW       
Sbjct: 184 TVRVW----DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 239
Query: 325 --DREDSANHMVV----------TGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGS 372
             D  +  ++ +V           G LRGH  ++  +     +++SGS D T+ +W    
Sbjct: 240 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDV-- 297
Query: 373 DGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
             +  CL +L GHT  + S     E  +       S S D  IR W + 
Sbjct: 298 -AQXKCLYILSGHTDRIYSTIYDHERKR-----CISASXDTTIRIWDLE 340

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 21/179 (11%)
Query: 247 SIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALAL 305
           ++  H  AV++V  S  G  +   SAD+ I++W   ++ K      T+  HK  ++ +A 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWG-AYDGKFEK---TISGHKLGISDVAW 76
Query: 306 SDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILC--LINVAGLLMSGSADR 363
           S D  +L S + D+++ +WD   S+   + T  L+GH   + C      + L++SGS D 
Sbjct: 77  SSDSNLLVSASDDKTLKIWDV--SSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 364 TVRIWQRGSDGRFG-CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
           +VRIW    D + G CL  L  H+ PV ++       ++G + + S S DG  R W  +
Sbjct: 133 SVRIW----DVKTGKCLKTLPAHSDPVSAV----HFNRDGSL-IVSSSYDGLCRIWDTA 182

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 20/216 (9%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
           H  AV+    + N   + S S DK +KIW A D +  ++I  H+  ++ VA S+   +  
Sbjct: 25  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
           + S D+ +++W    +      + TL+ H + V     +    ++ SG+ D S+ +WD +
Sbjct: 85  SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 328 DSANHMVVTGALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGH 385
                 +    L  H   +  +  N  G L++S S D   RIW   S G+  CL  L   
Sbjct: 141 TG----MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKTLIDD 193
Query: 386 TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
             P  S    +  G+     + + +LD  ++ W  S
Sbjct: 194 DNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 225

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 14/177 (7%)
Query: 248 IKAHEDAVNAVAV-SAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALS 306
            +AH D + ++AV      V +GS D  +++W     E   AL  T E H+  V  +A +
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVAFN 149
Query: 307 -DDGTVLFSGACDRSILVWDR-EDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRT 364
             D +   SG  DR++ VW   + + N  + TG  RG        +     +++ S D T
Sbjct: 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 365 VRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
           ++IW   +     C+A LEGH   V             +  + SGS DG ++ W  S
Sbjct: 210 IKIWDYQTK---SCVATLEGHMSNVSFAVF-----HPTLPIIISGSEDGTLKIWNSS 258

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 14/177 (7%)
Query: 248 IKAHEDAVNAVAV-SAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALS 306
            +AH D + ++AV      V +GS D  +++W     E   AL  T E H+  V  +A +
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVAFN 149
Query: 307 -DDGTVLFSGACDRSILVWDR-EDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRT 364
             D +   SG  DR++ VW   + + N  + TG  RG        +     +++ S D T
Sbjct: 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 365 VRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
           ++IW   +     C+A LEGH   V             +  + SGS DG ++ W  S
Sbjct: 210 IKIWDYQTK---SCVATLEGHMSNVSFAVF-----HPTLPIIISGSEDGTLKIWNSS 258

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
           H  AV+    + N   + S S DK +KIW A D +  ++I  H+  ++ VA S+   +  
Sbjct: 28  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
           + S D+ +++W    +      + TL+ H + V     +    ++ SG+ D S+ +WD  
Sbjct: 88  SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 141
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
                 V TG     L  H   +  +  N  G L++S S D   RIW   S G+  CL  
Sbjct: 142 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 192
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
           L     P  S    +  G+     + + +LD  ++ W  S
Sbjct: 193 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 228

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
           H  AV+    + N   + S S DK +KIW A D +  ++I  H+  ++ VA S+   +  
Sbjct: 18  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 77
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
           + S D+ +++W    +      + TL+ H + V     +    ++ SG+ D S+ +WD  
Sbjct: 78  SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 131
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
                 V TG     L  H   +  +  N  G L++S S D   RIW   S G+  CL  
Sbjct: 132 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 182
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
           L     P  S    +  G+     + + +LD  ++ W  S
Sbjct: 183 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 218

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
           H  AV+    + N   + S S DK +KIW A D +  ++I  H+  ++ VA S+   +  
Sbjct: 39  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 98
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
           + S D+ +++W    +      + TL+ H + V     +    ++ SG+ D S+ +WD  
Sbjct: 99  SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 152
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
                 V TG     L  H   +  +  N  G L++S S D   RIW   S G+  CL  
Sbjct: 153 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 203
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
           L     P  S    +  G+     + + +LD  ++ W  S
Sbjct: 204 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 239

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
           H  AV+    + N   + S S DK +KIW A D +  ++I  H+  ++ VA S+   +  
Sbjct: 22  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
           + S D+ +++W    +      + TL+ H + V     +    ++ SG+ D S+ +WD  
Sbjct: 82  SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 135
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
                 V TG     L  H   +  +  N  G L++S S D   RIW   S G+  CL  
Sbjct: 136 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 186
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
           L     P  S    +  G+     + + +LD  ++ W  S
Sbjct: 187 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 222

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
           H  AV+    + N   + S S DK +KIW A D +  ++I  H+  ++ VA S+   +  
Sbjct: 23  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 82
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
           + S D+ +++W    +      + TL+ H + V     +    ++ SG+ D S+ +WD  
Sbjct: 83  SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 136
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
                 V TG     L  H   +  +  N  G L++S S D   RIW   S G+  CL  
Sbjct: 137 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 187
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
           L     P  S    +  G+     + + +LD  ++ W  S
Sbjct: 188 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 223

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
           H  AV+    + N   + S S DK +KIW A D +  ++I  H+  ++ VA S+   +  
Sbjct: 22  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
           + S D+ +++W    +      + TL+ H + V     +    ++ SG+ D S+ +WD  
Sbjct: 82  SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 135
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
                 V TG     L  H   +  +  N  G L++S S D   RIW   S G+  CL  
Sbjct: 136 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 186
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
           L     P  S    +  G+     + + +LD  ++ W  S
Sbjct: 187 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 222

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
           H  AV+    + N   + S S DK +KIW A D +  ++I  H+  ++ VA S+   +  
Sbjct: 28  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
           + S D+ +++W    +      + TL+ H + V     +    ++ SG+ D S+ +WD  
Sbjct: 88  SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 141
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
                 V TG     L  H   +  +  N  G L++S S D   RIW   S G+  CL  
Sbjct: 142 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 192
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
           L     P  S    +  G+     + + +LD  ++ W  S
Sbjct: 193 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 228

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
           H  AV+    + N   + S S DK +KIW A D +  ++I  H+  ++ VA S+   +  
Sbjct: 21  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 80
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
           + S D+ +++W    +      + TL+ H + V     +    ++ SG+ D S+ +WD  
Sbjct: 81  SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 134
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
                 V TG     L  H   +  +  N  G L++S S D   RIW   S G+  CL  
Sbjct: 135 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 185
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
           L     P  S    +  G+     + + +LD  ++ W  S
Sbjct: 186 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 221

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
           H  AV+    + N   + S S DK +KIW A D +  ++I  H+  ++ VA S+   +  
Sbjct: 44  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
           + S D+ +++W    +      + TL+ H + V     +    ++ SG+ D S+ +WD  
Sbjct: 104 SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 157
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
                 V TG     L  H   +  +  N  G L++S S D   RIW   S G+  CL  
Sbjct: 158 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 208
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
           L     P  S    +  G+     + + +LD  ++ W  S
Sbjct: 209 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 244

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
           H  AV+    + N   + S S DK +KIW A D +  ++I  H+  ++ VA S+   +  
Sbjct: 27  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 86
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
           + S D+ +++W    +      + TL+ H + V     +    ++ SG+ D S+ +WD  
Sbjct: 87  SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 140
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
                 V TG     L  H   +  +  N  G L++S S D   RIW   S G+  CL  
Sbjct: 141 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 191
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
           L     P  S    +  G+     + + +LD  ++ W  S
Sbjct: 192 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 227

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
           H  AV+    + N   + S S DK +KIW A D +  ++I  H+  ++ VA S+   +  
Sbjct: 28  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
           + S D+ +++W    +      + TL+ H + V     +    ++ SG+ D S+ +WD  
Sbjct: 88  SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 141
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
                 V TG     L  H   +  +  N  G L++S S D   RIW   S G+  CL  
Sbjct: 142 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 192
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
           L     P  S    +  G+     + + +LD  ++ W  S
Sbjct: 193 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 228

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
           H  AV+    + N   + S S DK +KIW A D +  ++I  H+  ++ VA S+   +  
Sbjct: 46  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 105
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
           + S D+ +++W    +      + TL+ H + V     +    ++ SG+ D S+ +WD  
Sbjct: 106 SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 159
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
                 V TG     L  H   +  +  N  G L++S S D   RIW   S G+  CL  
Sbjct: 160 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 210
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
           L     P  S    +  G+     + + +LD  ++ W  S
Sbjct: 211 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 246

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
           H  AV+    + N   + S S DK +KIW A D +  ++I  H+  ++ VA S+   +  
Sbjct: 25  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
           + S D+ +++W    +      + TL+ H + V     +    ++ SG+ D S+ +WD  
Sbjct: 85  SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 138
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
                 V TG     L  H   +  +  N  G L++S S D   RIW   S G+  CL  
Sbjct: 139 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 189
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
           L     P  S    +  G+     + + +LD  ++ W  S
Sbjct: 190 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 225

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTGLAV--NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
           H  AV+ +    N   + S S DK +KIW A D +  ++I  H+  ++ VA S+   +  
Sbjct: 25  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
           + S D+ +++W    +      + TL+ H + V     +    ++ SG+ D S+ +WD  
Sbjct: 85  SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 138
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
                 V TG     L  H   +  +  N  G L++S S D   RIW   S G+  CL  
Sbjct: 139 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 189
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
           L     P  S    +  G+     + + +LD  ++ W  S
Sbjct: 190 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 225

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 14/194 (7%)
Query: 231 DKSLKIWRASDLRCLESIKAHEDAVNAVAV-SAGGTVYTGSADRKIRVWAKPFNEKRHAL 289
           D  ++++  +    +   +AH D + ++AV      V +GS D  +++W     E   AL
Sbjct: 76  DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW---ENNWAL 132
Query: 290 IATLEKHKSAVNALALS-DDGTVLFSGACDRSILVWDR-EDSANHMVVTGALRGHGKAIL 347
             T E H+  V  +A +  D +   SG  DR++ VW   + + N  + TG  RG      
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192
Query: 348 CLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVF 407
             +     +++ S D T++IW   +     C+A LEGH   V             +  + 
Sbjct: 193 YPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVF-----HPTLPIII 244
Query: 408 SGSLDGEIRAWQVS 421
           SGS DG ++ W  S
Sbjct: 245 SGSEDGTLKIWNSS 258

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 20/216 (9%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
           H  AV+    + N   + S S DK +KIW A D +  ++I  H+  ++ VA S+   +  
Sbjct: 25  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
           + S D+ +++W    +      + TL+ H + V     +    ++ SG+ D S+ +WD +
Sbjct: 85  SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 328 DSANHMVVTGALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGH 385
                 +    L  H   +  +  N  G L++S S D   RIW   S G+  CL  L   
Sbjct: 141 TG----MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKTLIDD 193
Query: 386 TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
             P  S    +  G+     + + +LD +++ W  S
Sbjct: 194 DNPPVSFVKFSPNGK----YILAATLDNDLKLWDYS 225

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 100/237 (42%), Gaps = 47/237 (19%)
Query: 210 EHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYT 268
           +H  +   +  N   I S S DK++K+W      C+++   H + V  V  +  GT + +
Sbjct: 192 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 251
Query: 269 GSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD-------------------- 308
            S D+ +RVW     E +    A L +H+  V  ++ + +                    
Sbjct: 252 CSNDQTVRVWVVATKECK----AELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 307
Query: 309 GTVLFSGACDRSILVWDREDSANHMVVTG----ALRGHGKAILCLINVAG--LLMSGSAD 362
           G  L SG+ D++I +WD        V TG     L GH   +  ++  +G   ++S + D
Sbjct: 308 GPFLLSGSRDKTIKMWD--------VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD 359
Query: 363 RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419
           +T+R+W   +     C+  L  H   V SL     +       V +GS+D  ++ W+
Sbjct: 360 KTLRVWDYKNK---RCMKTLNAHEHFVTSL-----DFHKTAPYVVTGSVDQTVKVWE 408

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
Query: 293 LEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI--LCLI 350
           L  H+S V  +      +V+ S + D +I VWD E           L+GH  ++  +   
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD----FERTLKGHTDSVQDISFD 159
Query: 351 NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGS 410
           +   LL S SAD T+++W       F C+  + GH   V S++ +     NG   + S S
Sbjct: 160 HSGKLLASCSADMTIKLWDFQG---FECIRTMHGHDHNVSSVSIMP----NG-DHIVSAS 211
Query: 411 LDGEIRAWQV 420
            D  I+ W+V
Sbjct: 212 RDKTIKMWEV 221

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 14/177 (7%)
Query: 248 IKAHEDAVNAVAV-SAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALS 306
            +AH D + ++AV      V +GS D  +++W     E   AL  T E H+  V  +A +
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVAFN 149
Query: 307 -DDGTVLFSGACDRSILVWDR-EDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRT 364
             D +   SG  DR++ VW   + + N  + TG  RG        +     +++ S D T
Sbjct: 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 365 VRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
           ++IW   +     C+A LEGH   V             +  + SGS DG ++ W  S
Sbjct: 210 IKIWDYQTK---SCVATLEGHMSNVSFAVF-----HPTLPIIISGSEDGTLKIWNSS 258

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 15/165 (9%)
Query: 211 HGDAV--TGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY 267
           H DAV     + +   I S   DK+L++++A     L  IKAHED V   A S+  + + 
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGT--VLFSGACDRSILVWD 325
           T SAD+K+++W    +     L+ T ++H   VN    ++     +L +G+ D  + +WD
Sbjct: 681 TCSADKKVKIW----DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 736
Query: 326 REDSANHMVVTGALRGHGKAI-LCLINVAG-LLMSGSADRTVRIW 368
                N       + GH  ++  C  +    LL S SAD T+R+W
Sbjct: 737 ----LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 29/198 (14%)
Query: 231  DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG-TVYTGSADRKIRVWAKPFNEKRHAL 289
            D ++KI    + R   S   H+ AV  +  +A G T+ + S D  I+VW     +     
Sbjct: 989  DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD----- 1043
Query: 290  IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALR-----GHGK 344
               L+ H+  V    L  D  +L S + D ++ VW+        V+TG +        G 
Sbjct: 1044 YVFLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWN--------VITGRIERDFTCHQGT 1094
Query: 345  AILCLINV-AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGV 403
             + C I+  A    S SAD+T +IW   S      L  L+GH   V+  +A + +G    
Sbjct: 1095 VLSCAISSDATKFSSTSADKTAKIW---SFDLLSPLHELKGHNGCVRC-SAFSLDG---- 1146
Query: 404  VSVFSGSLDGEIRAWQVS 421
            + + +G  +GEIR W VS
Sbjct: 1147 ILLATGDDNGEIRIWNVS 1164

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 15/165 (9%)
Query: 211 HGDAV--TGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY 267
           H DAV     + +   I S   DK+L++++A     L  IKAHED V   A S+  + + 
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGT--VLFSGACDRSILVWD 325
           T SAD+K+++W    +     L+ T ++H   VN    ++     +L +G+ D  + +WD
Sbjct: 674 TCSADKKVKIW----DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729
Query: 326 REDSANHMVVTGALRGHGKAI-LCLINVAG-LLMSGSADRTVRIW 368
                N       + GH  ++  C  +    LL S SAD T+R+W
Sbjct: 730 ----LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 29/198 (14%)
Query: 231  DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG-TVYTGSADRKIRVWAKPFNEKRHAL 289
            D ++KI    + R   S   H+ AV  +  +A G T+ + S D  I+VW     +     
Sbjct: 982  DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD----- 1036
Query: 290  IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALR-----GHGK 344
               L+ H+  V    L  D  +L S + D ++ VW+        V+TG +        G 
Sbjct: 1037 YVFLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWN--------VITGRIERDFTCHQGT 1087
Query: 345  AILCLINV-AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGV 403
             + C I+  A    S SAD+T +IW   S      L  L+GH   V+  +A + +G    
Sbjct: 1088 VLSCAISSDATKFSSTSADKTAKIW---SFDLLSPLHELKGHNGCVRC-SAFSLDG---- 1139
Query: 404  VSVFSGSLDGEIRAWQVS 421
            + + +G  +GEIR W VS
Sbjct: 1140 ILLATGDDNGEIRIWNVS 1157

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 17/166 (10%)
Query: 209 IEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAV-NAVAVSAGGTVY 267
           I H   V  L+  +G++ S SWDK+ K+W+   L  + +++AH  +V +A  VS     +
Sbjct: 101 IGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSL--VYNLQAHNASVWDAKVVSFSENKF 158
Query: 268 -TGSADRKIRVWAKPFNEKRHALIATLEK-HKSAVNALALSDDGTVLFSGACDRSILVWD 325
            T SAD+ I++W    N+K   +I T    H   V  LA+ DDG  +   +C    L+  
Sbjct: 159 LTASADKTIKLWQ---NDK---VIKTFSGIHNDVVRHLAVVDDGHFI---SCSNDGLIKL 209
Query: 326 REDSANHMVVTGALRGHGKAILCL-INVAGLLMSGSADRTVRIWQR 370
            +     ++ T    GH   + C+ +   G ++S   DRTVRIW +
Sbjct: 210 VDXHTGDVLRT--YEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSK 253

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 24/186 (12%)
Query: 247 SIKAHEDAVNAVAVSAG--GTVYTGSADRKIRVWAKPFNEKRHAL-IATLEKHKSAVNAL 303
           +++ H   V ++A SAG    + + S D+ +  W    ++++  + + + + H   V   
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 304 ALSDDGTVLFSGACDRSILVWDREDSANHMVVTGA----LRGHGKAILC--LINVAGLLM 357
            L+ DG    S + D+++ +WD        V TG       GH   ++   +   A +++
Sbjct: 72  TLTADGAYALSASWDKTLRLWD--------VATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 358 SGSADRTVRIWQ-RGSDGRFGCLAVLEGHTKPVKSLTAV-TEEGQNGVVSVFSGSLDGEI 415
           SGS D+T+++W  +G      CLA L GH   V  +  V  E+  +  V++ S   D  +
Sbjct: 124 SGSRDKTIKVWTIKGQ-----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 416 RAWQVS 421
           +AW ++
Sbjct: 179 KAWNLN 184

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 24/186 (12%)
Query: 247 SIKAHEDAVNAVAVSAG--GTVYTGSADRKIRVWAKPFNEKRHAL-IATLEKHKSAVNAL 303
           +++ H   V ++A SAG    + + S D+ +  W    ++++  + + + + H   V   
Sbjct: 6   TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 304 ALSDDGTVLFSGACDRSILVWDREDSANHMVVTGA----LRGHGKAILC--LINVAGLLM 357
            L+ DG    S + D+++ +WD        V TG       GH   ++   +   A +++
Sbjct: 66  TLTADGAYALSASWDKTLRLWD--------VATGETYQRFVGHKSDVMSVDIDKKASMII 117
Query: 358 SGSADRTVRIWQ-RGSDGRFGCLAVLEGHTKPVKSLTAV-TEEGQNGVVSVFSGSLDGEI 415
           SGS D+T+++W  +G      CLA L GH   V  +  V  E+  +  V++ S   D  +
Sbjct: 118 SGSRDKTIKVWTIKGQ-----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 172
Query: 416 RAWQVS 421
           +AW ++
Sbjct: 173 KAWNLN 178

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 24/186 (12%)
Query: 247 SIKAHEDAVNAVAVSAG--GTVYTGSADRKIRVWAKPFNEKRHAL-IATLEKHKSAVNAL 303
           +++ H   V ++A SAG    + + S D+ +  W    ++++  + + + + H   V   
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 304 ALSDDGTVLFSGACDRSILVWDREDSANHMVVTGA----LRGHGKAILC--LINVAGLLM 357
            L+ DG    S + D+++ +WD        V TG       GH   ++   +   A +++
Sbjct: 72  TLTADGAYALSASWDKTLRLWD--------VATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 358 SGSADRTVRIWQ-RGSDGRFGCLAVLEGHTKPVKSLTAV-TEEGQNGVVSVFSGSLDGEI 415
           SGS D+T+++W  +G      CLA L GH   V  +  V  E+  +  V++ S   D  +
Sbjct: 124 SGSRDKTIKVWTIKGQ-----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 416 RAWQVS 421
           +AW ++
Sbjct: 179 KAWNLN 184

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 24/186 (12%)
Query: 247 SIKAHEDAVNAVAVSAG--GTVYTGSADRKIRVWAKPFNEKRHAL-IATLEKHKSAVNAL 303
           +++ H   V ++A SAG    + + S D+ +  W    ++++  + + + + H   V   
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 304 ALSDDGTVLFSGACDRSILVWDREDSANHMVVTGA----LRGHGKAILC--LINVAGLLM 357
            L+ DG    S + D+++ +WD        V TG       GH   ++   +   A +++
Sbjct: 72  TLTADGAYALSASWDKTLRLWD--------VATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 358 SGSADRTVRIWQ-RGSDGRFGCLAVLEGHTKPVKSLTAV-TEEGQNGVVSVFSGSLDGEI 415
           SGS D+T+++W  +G      CLA L GH   V  +  V  E+  +  V++ S   D  +
Sbjct: 124 SGSRDKTIKVWTIKGQ-----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 416 RAWQVS 421
           +AW ++
Sbjct: 179 KAWNLN 184

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 24/186 (12%)
Query: 247 SIKAHEDAVNAVAVSAG--GTVYTGSADRKIRVWAKPFNEKRHAL-IATLEKHKSAVNAL 303
           +++ H   V ++A SAG    + + S D+ +  W    ++++  + + + + H   V   
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 304 ALSDDGTVLFSGACDRSILVWDREDSANHMVVTGA----LRGHGKAILC--LINVAGLLM 357
            L+ DG    S + D+++ +WD        V TG       GH   ++   +   A +++
Sbjct: 72  TLTADGAYALSASWDKTLRLWD--------VATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 358 SGSADRTVRIWQ-RGSDGRFGCLAVLEGHTKPVKSLTAV-TEEGQNGVVSVFSGSLDGEI 415
           SGS D+T+++W  +G      CLA L GH   V  +  V  E+  +  V++ S   D  +
Sbjct: 124 SGSRDKTIKVWTIKGQ-----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 416 RAWQVS 421
           +AW ++
Sbjct: 179 KAWNLN 184

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 90/187 (48%), Gaps = 26/187 (13%)
Query: 247 SIKAHEDAVNAVAVSAG--GTVYTGSADRKIRVWAKPFNEKRHAL-IATLEKHKSAVNAL 303
           +++ H   V ++A SAG    + + S D+ +  W    ++++  + + + + H   V   
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 304 ALSDDGTVLFSGACDRSILVWDREDSANHMVVTGA----LRGHGKAILCLINV---AGLL 356
            L+ DG    S + D+++ +WD        V TG       GH K+ +  +++   A  +
Sbjct: 72  TLTADGAYALSASWDKTLRLWD--------VATGETYQRFVGH-KSDVXSVDIDKKASXI 122
Query: 357 MSGSADRTVRIWQ-RGSDGRFGCLAVLEGHTKPVKSLTAV-TEEGQNGVVSVFSGSLDGE 414
           +SGS D+T+++W  +G      CLA L GH   V  +  V  E+  +  V++ S   D  
Sbjct: 123 ISGSRDKTIKVWTIKGQ-----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKX 177
Query: 415 IRAWQVS 421
           ++AW ++
Sbjct: 178 VKAWNLN 184

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 34/227 (14%)
Query: 219 AVNNGLIYSVSWDKSLKIWRASD---LRCLESIKAH-EDAVNAVAVSAGGTVYTGSADRK 274
           A +  L+ + S DKS+ +W   +     C+  + +H +D  + V   +   + + S D  
Sbjct: 114 APSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDT 173
Query: 275 IRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMV 334
           ++++ +   E      ATLE H+S V +LA    G  L S + DR++ +W +    N   
Sbjct: 174 VKLYRE--EEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQG 231
Query: 335 VTGALRGHGKAILCLINVAGL----------------LMSGSADRTVRIWQR--GSDGR- 375
           V  A  G   +  C+  ++G                 L +   D  +R++Q    SD + 
Sbjct: 232 V--ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQ 289
Query: 376 --FGCLAVL-EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419
             F   A L + H++ V  +    +E   G+++  S S DGE+  W+
Sbjct: 290 PTFSLTAHLHQAHSQDVNCVAWNPKE--PGLLA--SCSDDGEVAFWK 332

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 14/163 (8%)
Query: 212 GDAVT-GLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY-TG 269
           GD ++  LA +  L  S + D S K+W   +  C ++   HE  +NA+     G  + TG
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 244
Query: 270 SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD--RE 327
           S D   R++       +  +  + +     + +++ S  G +L +G  D +  VWD  + 
Sbjct: 245 SDDATCRLF--DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 328 DSANHMVVTGALRGHGKAILCL-INVAGL-LMSGSADRTVRIW 368
           D A      G L GH   + CL +   G+ + +GS D  ++IW
Sbjct: 303 DRA------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 14/163 (8%)
Query: 212 GDAVT-GLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY-TG 269
           GD ++  LA +  L  S + D S K+W   +  C ++   HE  +NA+     G  + TG
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 244
Query: 270 SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD--RE 327
           S D   R++       +  +  + +     + +++ S  G +L +G  D +  VWD  + 
Sbjct: 245 SDDATCRLF--DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 328 DSANHMVVTGALRGHGKAILCL-INVAGL-LMSGSADRTVRIW 368
           D A      G L GH   + CL +   G+ + +GS D  ++IW
Sbjct: 303 DRA------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 14/163 (8%)
Query: 212 GDAVT-GLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY-TG 269
           GD ++  LA +  L  S + D S K+W   +  C ++   HE  +NA+     G  + TG
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 244
Query: 270 SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD--RE 327
           S D   R++       +  +  + +     + +++ S  G +L +G  D +  VWD  + 
Sbjct: 245 SDDATCRLF--DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 328 DSANHMVVTGALRGHGKAILCL-INVAGL-LMSGSADRTVRIW 368
           D A      G L GH   + CL +   G+ + +GS D  ++IW
Sbjct: 303 DRA------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 14/163 (8%)
Query: 212 GDAVT-GLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY-TG 269
           GD ++  LA +  L  S + D S K+W   +  C ++   HE  +NA+     G  + TG
Sbjct: 196 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 255
Query: 270 SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD--RE 327
           S D   R++       +  +  + +     + +++ S  G +L +G  D +  VWD  + 
Sbjct: 256 SDDATCRLF--DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 313
Query: 328 DSANHMVVTGALRGHGKAILCL-INVAGL-LMSGSADRTVRIW 368
           D A      G L GH   + CL +   G+ + +GS D  ++IW
Sbjct: 314 DRA------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 14/163 (8%)
Query: 212 GDAVT-GLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY-TG 269
           GD ++  LA +  L  S + D S K+W   +  C ++   HE  +NA+     G  + TG
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 244
Query: 270 SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD--RE 327
           S D   R++       +  +  + +     + +++ S  G +L +G  D +  VWD  + 
Sbjct: 245 SDDATCRLF--DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 328 DSANHMVVTGALRGHGKAILCL-INVAGL-LMSGSADRTVRIW 368
           D A      G L GH   + CL +   G+ + +GS D  ++IW
Sbjct: 303 DRA------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 12/180 (6%)
Query: 247 SIKAHEDAVNAVA--VSAGGTVYTGSADRKIRVWAKPFNEKRHALIAT-LEKHKSAVNAL 303
           +++AH D V A+A  +     + + S D+ I +W    ++K + +    L  H   V  +
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 304 ALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSA 361
            LS DG    SG+ D  + +WD        V T    GH K +L +        ++S S 
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAAG----VSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 362 DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
           DRT+++W    + ++      EGH   V  +       Q  +VS    S D  ++ W +S
Sbjct: 493 DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA---SWDKTVKVWNLS 549

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 14/157 (8%)
Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTV-YTGSADRKIRVWA 279
           +N +I S  WDK +K+W  ++ +   +   H   +N V VS  G++  +G  D +  +W 
Sbjct: 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW- 242
Query: 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE-----DSANHMV 334
              NE +H  + TL+     +NAL  S +   L + A   SI +WD E     D     V
Sbjct: 243 -DLNEGKH--LYTLDG-GDIINALCFSPNRYWLCA-ATGPSIKIWDLEGKIIVDELKQEV 297
Query: 335 VTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQ 369
           ++ + +        L   A    L +G  D  VR+WQ
Sbjct: 298 ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 14/157 (8%)
Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTV-YTGSADRKIRVWA 279
           +N +I S  WDK +K+W  ++ +   +   H   +N V VS  G++  +G  D +  +W 
Sbjct: 161 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW- 219
Query: 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE-----DSANHMV 334
              NE +H  + TL+     +NAL  S +   L + A   SI +WD E     D     V
Sbjct: 220 -DLNEGKH--LYTLDG-GDIINALCFSPNRYWLCA-ATGPSIKIWDLEGKIIVDELKQEV 274
Query: 335 VTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQ 369
           ++ + +        L   A    L +G  D  VR+WQ
Sbjct: 275 ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 311

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 17/145 (11%)
Query: 231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY-TGSADRKIRVWAKPFNEKRHAL 289
           DK   +W     +C+++ + HE  VN+V     G  + +GS D   R++       R   
Sbjct: 219 DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLY--DLRADREVA 276
Query: 290 IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGA----LRGHGKA 345
           I + E      +++  S  G +LF+G  D +I VWD        V+ G+    L GH   
Sbjct: 277 IYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWD--------VLKGSRVSILFGHENR 328
Query: 346 ILCL-INVAGL-LMSGSADRTVRIW 368
           +  L ++  G    SGS D T+R+W
Sbjct: 329 VSTLRVSPDGTAFCSGSWDHTLRVW 353

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 65/156 (41%), Gaps = 12/156 (7%)
Query: 218 LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG-TVYTGSADRKIR 276
           L+ N     S SWD SL++W   + +C      H   V +VA S     + +G  D  +R
Sbjct: 75  LSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALR 134
Query: 277 VWAKPFNEKRHALIATLEKHKSAVNALALSD--DGTVLFSGACDRSILVWDREDSANHMV 334
           VW     E  H L  +   H   V+ +  S   D  V+ SG  D  + VWD    A   +
Sbjct: 135 VWNVK-GECMHTL--SRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDL---ATGRL 188
Query: 335 VTGALRGHGKAI--LCLINVAGLLMSGSADRTVRIW 368
           VT  L+GH   +  + +     L  S   D   R+W
Sbjct: 189 VTD-LKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 16/179 (8%)
Query: 200 VRRHKKKL-WIEHGDAVTGLAVNNGLIYSVSWDKS-LKIW------RASDLRCLESIKAH 251
           + RH +++  + HG+ V  + ++N   +  +  K  +K+W        S +  L+ +   
Sbjct: 38  IPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRD 97
Query: 252 EDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTV 311
               +   +  G T+  G     + +W       R  + A L     A  ALA+S D  V
Sbjct: 98  NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR--IKAELTSSAPACYALAISPDSKV 155
Query: 312 LFSGACDRSILVWDREDSANHMVVTGALRGH--GKAILCLINVAGLLMSGSADRTVRIW 368
            FS   D +I VWD     ++  +    +GH  G + + + N    L +G  D TVR W
Sbjct: 156 CFSCCSDGNIAVWD----LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGS--ADRKIRVWAKPFNEKRHA 288
           D+ ++IW      CL ++ AH    + +       + +G   A  ++ +W  P   K   
Sbjct: 220 DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK--- 276
Query: 289 LIATLEKHKSAVNALALSDDGTVLFSGACDRSILVW 324
            +A L+ H S V +L +S DG  + S A D ++ +W
Sbjct: 277 -VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 306 SDDGTVLFSGACDRSILVW---DREDSANHMVVTGALRGHGKAI--LCLINVAGLLMSGS 360
           ++D  VL SG+ D+++++W   + E +    +   AL GH   +  L L       +S S
Sbjct: 36  NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95
Query: 361 ADRTVRIWQRGSDGRFG-CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419
            D+T+R+W    D R G       GH   V S+    +  Q     + S   + EI+ W 
Sbjct: 96  WDKTLRLW----DLRTGTTYKRFVGHQSEVYSVAFSPDNRQ-----ILSAGAEREIKLWN 146
Query: 420 VSVSCPNSS 428
           +   C  SS
Sbjct: 147 ILGECKFSS 155

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 11/148 (7%)
Query: 242 LRCLESIKAHEDAVNAVAVSA----GGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHK 297
           ++ +E   + +D++  ++ S     G  +  GS    +R W     +    +    + H 
Sbjct: 29  MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWE--VQDSGQTIPKAQQMHT 86
Query: 298 SAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI--LCLINVAGL 355
             V  +  SDDG+ +F+ +CD++  +WD   S+N  +         K I  +   N +  
Sbjct: 87  GPVLDVCWSDDGSKVFTASCDKTAKMWDL--SSNQAIQIAQHDAPVKTIHWIKAPNYS-C 143
Query: 356 LMSGSADRTVRIWQRGSDGRFGCLAVLE 383
           +M+GS D+T++ W   S      L + E
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMMVLQLPE 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	437
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.98
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.9
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.88
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.88
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.86
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.85
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.84
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.83
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.81
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.8
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.79
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.79
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.78
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.78
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.77
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.74
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.73
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.72
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.71
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.71
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.71
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.7
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.68
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.68
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.67
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.67
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.66
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.66
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.64
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.63
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.62
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.62
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.62
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.59
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.58
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.58
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.58
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.58
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.56
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.55
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.54
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.53
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.5
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.5
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.5
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.5
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.5
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.49
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.46
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.45
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.44
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.43
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.41
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.39
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.39
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.39
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.37
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.37
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.33
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.32
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.32
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.3
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.3
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.29
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.28
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.27
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.27
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.24
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.23
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.21
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.21
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.21
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.2
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.19
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.18
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.16
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.15
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.14
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.07
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.07
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.07
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.06
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.06
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.03
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.99
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.98
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.95
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.93
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.93
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.91
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.91
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.9
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.89
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.89
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.84
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.84
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.83
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.8
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.79
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.78
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.75
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.72
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.71
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.71
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.71
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.69
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.66
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.65
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.65
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.64
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.6
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.6
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.59
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.56
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.51
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.47
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.45
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.44
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.39
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.33
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.32
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.3
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.29
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.27
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.24
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.23
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.22
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.21
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.21
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.17
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.16
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.15
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.12
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.07
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.03
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.02
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.01
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	98.01
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.99
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.99
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.93
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.91
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.85
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.84
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.84
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.83
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.82
3ott_A	758	Two-component system sensor histidine kinase; beta	97.81
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.81
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.77
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.73
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.7
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.68
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.61
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.57
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.53
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.51
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.49
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.42
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.42
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.37
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.34
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.32
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.29
3ott_A	758	Two-component system sensor histidine kinase; beta	97.21
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.2
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.11
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.07
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.05
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.05
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.04
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.04
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.03
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.91
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	96.78
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.73
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.57
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.56
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.55
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.48
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.47
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.13
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.0
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.97
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.87
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.54
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.53
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.51
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.48
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.69
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	94.4
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	93.87
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	93.4
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	92.62
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	91.54
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	90.94
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	90.32
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	89.85
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	89.07
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	86.97
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	86.73
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	86.7
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	86.59
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	85.88
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	85.88
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	83.63
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	80.68

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7e-46  Score=330.26  Aligned_cols=284  Identities=20%  Similarity=0.262  Sum_probs=249.4

Q ss_pred             ceeeeec-CccCCeEEEEee------CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEE
Q 013717           89 CINSVQL-GHKLPIGCIAVH------HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTA  158 (437)
Q Consensus        89 ~~~~~~~-~h~~~V~~l~~~------~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~  158 (437)
                      ..+...+ +|.+.|.+++|+      +++|++|+.| +|+|||+..+.......+   .+|...|.+++|+++.  ++++
T Consensus        22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l---~gh~~~v~~~~~~~~~~~l~s~   98 (321)
T 3ow8_A           22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL---EGHQLGVVSVDISHTLPIAASS   98 (321)
T ss_dssp             EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEE---CCCSSCEEEEEECSSSSEEEEE
T ss_pred             hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeee---ccCCCCEEEEEECCCCCEEEEE
Confidence            3444555 999999999996      4689999999 999999987655444444   6899999999999765  9999


Q ss_pred             ecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEE
Q 013717          159 HQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKI  236 (437)
Q Consensus       159 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~i  236 (437)
                      +.|++|++||+.+++....+                              ..|...+.+++|+|  ++|++|+.||.|++
T Consensus        99 s~D~~i~lWd~~~~~~~~~~------------------------------~~~~~~~~~~~~spdg~~l~~g~~dg~v~i  148 (321)
T 3ow8_A           99 SLDAHIRLWDLENGKQIKSI------------------------------DAGPVDAWTLAFSPDSQYLATGTHVGKVNI  148 (321)
T ss_dssp             ETTSEEEEEETTTTEEEEEE------------------------------ECCTTCCCCEEECTTSSEEEEECTTSEEEE
T ss_pred             eCCCcEEEEECCCCCEEEEE------------------------------eCCCccEEEEEECCCCCEEEEEcCCCcEEE
Confidence            99999999999987644333                              24777888999998  89999999999999


Q ss_pred             EECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE
Q 013717          237 WRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG  315 (437)
Q Consensus       237 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  315 (437)
                      ||+++++....+..+...|.+++|+|+++ |++|+.||.|++||++..    +.+..+.+|...|.+++|+|++++|++|
T Consensus       149 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~spd~~~l~s~  224 (321)
T 3ow8_A          149 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG----KLLHTLEGHAMPIRSLTFSPDSQLLVTA  224 (321)
T ss_dssp             EETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCCCEEEECTTSCEEEEE
T ss_pred             EEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC----cEEEEEcccCCceeEEEEcCCCCEEEEE
Confidence            99999999999988999999999999999 999999999999998754    4677888999999999999999999999


Q ss_pred             eCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEE
Q 013717          316 ACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLT  393 (437)
Q Consensus       316 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~  393 (437)
                      +.|+.|++||++.++    ....+.+|...|.+++|+++  +|++++.|+.|++||+.+++   ++..+.+|...|.+++
T Consensus       225 s~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~---~~~~~~~h~~~v~~v~  297 (321)
T 3ow8_A          225 SDDGYIKIYDVQHAN----LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT---CVHTFFDHQDQVWGVK  297 (321)
T ss_dssp             CTTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEE
T ss_pred             cCCCeEEEEECCCcc----eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE---EEEEEcCCCCcEEEEE
Confidence            999999999998765    44567889999999998755  99999999999999999866   8889999999999999


Q ss_pred             EEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          394 AVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       394 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      |+|++.     +|++++.||.|++||+.
T Consensus       298 ~s~~g~-----~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          298 YNGNGS-----KIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             ECTTSS-----EEEEEETTCCEEEEECC
T ss_pred             ECCCCC-----EEEEEeCCCeEEEEeCC
Confidence            999874     79999999999999964

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-45  Score=340.21  Aligned_cols=279  Identities=25%  Similarity=0.483  Sum_probs=245.7

Q ss_pred             eeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEE
Q 013717           92 SVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIR  165 (437)
Q Consensus        92 ~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~  165 (437)
                      ...+ +|.++|++++|+  +++|++|+.| .|+|||+.+++  ....+   .+|...|.+++|+++.  |++|+.|++|+
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~--~~~~l---~~h~~~V~~v~~~~~~~~l~sgs~D~~i~  175 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD--FERTL---KGHTDSVQDISFDHSGKLLASCSADMTIK  175 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC--CCEEE---CCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEEEE---eccCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence            4455 999999999999  8999999999 99999999853  34444   5799999999999765  99999999999


Q ss_pred             EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc
Q 013717          166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR  243 (437)
Q Consensus       166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~  243 (437)
                      +||+.+++....+                              .+|...|.+++|+|  +++++|+.|++|++||+++++
T Consensus       176 iwd~~~~~~~~~~------------------------------~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~  225 (410)
T 1vyh_C          176 LWDFQGFECIRTM------------------------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY  225 (410)
T ss_dssp             EEETTSSCEEECC------------------------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC
T ss_pred             EEeCCCCceeEEE------------------------------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence            9999876543332                              36999999999998  899999999999999999999


Q ss_pred             eEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccC--------------
Q 013717          244 CLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD--------------  308 (437)
Q Consensus       244 ~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------  308 (437)
                      ++..+.+|...|.++.++|++. +++|+.||.|++||+....    ....+.+|...|.+++|+|+              
T Consensus       226 ~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~  301 (410)
T 1vyh_C          226 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE----CKAELREHRHVVECISWAPESSYSSISEATGSET  301 (410)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-
T ss_pred             EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc----eeeEecCCCceEEEEEEcCcccccchhhhccccc
Confidence            9999999999999999999998 9999999999999987543    56678889999999999996              


Q ss_pred             ------CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeee
Q 013717          309 ------GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLA  380 (437)
Q Consensus       309 ------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~  380 (437)
                            |.+|++|+.|+.|++||++++.    ....+.+|...|.++.++++  +|++|+.||.|++||+.+++   ++.
T Consensus       302 ~~~~~~g~~l~sgs~D~~i~iwd~~~~~----~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~---~~~  374 (410)
T 1vyh_C          302 KKSGKPGPFLLSGSRDKTIKMWDVSTGM----CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR---CMK  374 (410)
T ss_dssp             ------CCEEEEEETTSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC---CCE
T ss_pred             cccCCCCCEEEEEeCCCeEEEEECCCCc----eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eEE
Confidence                  6789999999999999998776    44456789999999988754  99999999999999998766   788


Q ss_pred             eecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          381 VLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       381 ~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      .+.+|...|++++|+|++.     +|++|+.||+|++|+++
T Consensus       375 ~~~~h~~~v~~l~~~~~~~-----~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          375 TLNAHEHFVTSLDFHKTAP-----YVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEECCSSCEEEEEECSSSS-----CEEEEETTSEEEEEC--
T ss_pred             EEcCCCCcEEEEEEcCCCC-----EEEEEeCCCcEEEEeCC
Confidence            8999999999999999985     69999999999999864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.2e-44  Score=323.85  Aligned_cols=285  Identities=18%  Similarity=0.262  Sum_probs=243.2

Q ss_pred             eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCe
Q 013717           90 INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCK  163 (437)
Q Consensus        90 ~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~  163 (437)
                      .....+ +|.+.|.+++|+  +++|++|+.| .|++||..++.  ....+   ..|...|.+++|+++.  |++++.|+.
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~--~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d~~  120 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN--KVHAI---PLRSSWVMTCAYAPSGNYVACGGLDNI  120 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC--EEEEE---ECSSSCEEEEEECTTSSEEEEEETTCE
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC--cceEe---ecCCccEEEEEECCCCCEEEEEeCCCe
Confidence            345566 999999999999  8999999999 99999998853  33343   4689999999999765  999999999


Q ss_pred             EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCc
Q 013717          164 IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDL  242 (437)
Q Consensus       164 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~  242 (437)
                      |++|++.+.+....                          ....+.+|...|.++.|.+ +.+++++.|+.|++||++++
T Consensus       121 v~iw~~~~~~~~~~--------------------------~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~  174 (340)
T 1got_B          121 CSIYNLKTREGNVR--------------------------VSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG  174 (340)
T ss_dssp             EEEEETTTCSBSCE--------------------------EEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTT
T ss_pred             EEEEECccCCCcce--------------------------eEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCC
Confidence            99999986532111                          0123357999999999987 88999999999999999999


Q ss_pred             ceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcE
Q 013717          243 RCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSI  321 (437)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  321 (437)
                      +.+..+.+|...|.+++|+|++. +++|+.||.|++||++..    .....+.+|...|.+++|+|++++|++|+.||+|
T Consensus       175 ~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~----~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v  250 (340)
T 1got_B          175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG----MCRQTFTGHESDINAICFFPNGNAFATGSDDATC  250 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             cEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC----eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcE
Confidence            99999999999999999999998 999999999999998754    3677788999999999999999999999999999


Q ss_pred             EEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCC
Q 013717          322 LVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEG  399 (437)
Q Consensus       322 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  399 (437)
                      ++||++.++....+  ....+...|.+++++++  +|++|+.||.|++||+.+++   .+..+.+|.++|.+++|+|++.
T Consensus       251 ~iwd~~~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~---~~~~~~~h~~~v~~~~~s~dg~  325 (340)
T 1got_B          251 RLFDLRADQELMTY--SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD---RAGVLAGHDNRVSCLGVTDDGM  325 (340)
T ss_dssp             EEEETTTTEEEEEE--CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEECTTSS
T ss_pred             EEEECCCCcEEEEE--ccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc---EeeEeecCCCcEEEEEEcCCCC
Confidence            99999876533222  12334456888887754  99999999999999998866   7788999999999999999885


Q ss_pred             CCceEEEEEecCCCcEEEEe
Q 013717          400 QNGVVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       400 ~~~~~~l~s~~~dg~i~iw~  419 (437)
                           +|++|+.||.|++||
T Consensus       326 -----~l~s~s~D~~i~iWd  340 (340)
T 1got_B          326 -----AVATGSWDSFLKIWN  340 (340)
T ss_dssp             -----CEEEEETTSCEEEEC
T ss_pred             -----EEEEEcCCccEEecC
Confidence                 799999999999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.1e-44  Score=327.60  Aligned_cols=314  Identities=17%  Similarity=0.159  Sum_probs=227.5

Q ss_pred             cccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEec------C-eEEEEeCCCCceeeeeccccCC
Q 013717           70 SLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASS------H-EINVYDRTGTTWTSINTFNDND  139 (437)
Q Consensus        70 ~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~------d-~v~vwd~~~~~~~~~~~~~~~~  139 (437)
                      .+...+.+.....|++..     ... +|...|.+++|+  |++||+|+.      | .|++|+..++...... .....
T Consensus        18 ~~~~~~g~~~~~~w~~p~-----~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~-~~~~~   91 (357)
T 4g56_B           18 LYFQSNGSSKGSAWGRPV-----TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESL-CTAGV   91 (357)
T ss_dssp             ---------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGG-CSEEE
T ss_pred             eEEecCCCccccccCCCC-----CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeE-ecccC
Confidence            344445556667776533     223 899999999999  999999997      6 7999988775321111 11123


Q ss_pred             CCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717          140 SSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL  218 (437)
Q Consensus       140 ~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  218 (437)
                      +|...|.+++|+++. +++++.||+|++||+.+++......                          ....+|...|+++
T Consensus        92 ~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~--------------------------~~~~~h~~~V~~v  145 (357)
T 4g56_B           92 QTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNK--------------------------FAKYEHDDIVKTL  145 (357)
T ss_dssp             ECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCC--------------------------EEECCCSSCEEEE
T ss_pred             CCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEe--------------------------eccCCCCCCEEEE
Confidence            588999999999766 8899999999999998876433221                          1123699999999


Q ss_pred             EeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEee
Q 013717          219 AVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLE  294 (437)
Q Consensus       219 ~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  294 (437)
                      +|+|  ++|++|+.||.|++||+++++.+..+..|...|++++|++++.  +++++.||.|++||++......  ...+.
T Consensus       146 ~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~--~~~~~  223 (357)
T 4g56_B          146 SVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT--RIDFC  223 (357)
T ss_dssp             EECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC--BCCCT
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee--eeeec
Confidence            9998  8999999999999999999999999999999999999999875  8999999999999987654221  12334


Q ss_pred             CccccEEEEEEccC-CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeC
Q 013717          295 KHKSAVNALALSDD-GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQR  370 (437)
Q Consensus       295 ~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~  370 (437)
                      .+...+.+++|+|+ +.+|++|+.|+.|++||+++++..    ..+.+|...|.+++|+++   +|++|+.||+|+|||+
T Consensus       224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~----~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~  299 (357)
T 4g56_B          224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA----QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDA  299 (357)
T ss_dssp             TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC----EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred             cccccccchhhhhcccceEEEeecccceeEEECCCCcEe----EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence            56778999999997 568899999999999999887643    345778999999998743   8999999999999999


Q ss_pred             CCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCCCC
Q 013717          371 GSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSSP  429 (437)
Q Consensus       371 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  429 (437)
                      ++++   ++. ..+|.+.|++|+|+|.++.    +|++++.||+|++|++.........
T Consensus       300 ~~~~---~~~-~~~H~~~V~~vafsP~d~~----~l~s~s~Dg~v~iW~~~~~~~~~~~  350 (357)
T 4g56_B          300 DFSE---VFR-DLSHRDFVTGVAWSPLDHS----KFTTVGWDHKVLHHHLPSEGRTENL  350 (357)
T ss_dssp             TSCE---EEE-ECCCSSCEEEEEECSSSTT----EEEEEETTSCEEEEECC--------
T ss_pred             CCCc---EeE-ECCCCCCEEEEEEeCCCCC----EEEEEcCCCeEEEEECCCCCccccc
Confidence            8765   444 4579999999999985433    8999999999999999876544433

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.1e-43  Score=340.84  Aligned_cols=346  Identities=19%  Similarity=0.290  Sum_probs=263.9

Q ss_pred             ccceeeccccc-cccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeee
Q 013717           59 NLSLQTLPSVP-SLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSIN  133 (437)
Q Consensus        59 ~~~~~~~~~~~-~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~  133 (437)
                      ..++.|.|..+ .+++.+.|+++++|+... .++...+ +|.+.|.+++|+  +++|++|+.| .|++||+.+++.  ..
T Consensus       150 v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~-~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~--~~  226 (611)
T 1nr0_A          150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPP-FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK--TG  226 (611)
T ss_dssp             EEEEEECSSSSCEEEEEETTSCEEEEETTT-BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--EE
T ss_pred             ceEEEECCCCCeEEEEEeCCCeEEEEECCC-CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE--ee
Confidence            35778999876 599999999999999765 4566677 999999999999  8999999999 999999988543  22


Q ss_pred             ccc----cCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceee---------ecCCCCee
Q 013717          134 TFN----DNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLR---------FMLPNSYV  198 (437)
Q Consensus       134 ~~~----~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~  198 (437)
                      .+.    ...+|.+.|.+++|+|+.  |++++.|++|++||+.+++....+..-.........         ....++.+
T Consensus       227 ~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i  306 (611)
T 1nr0_A          227 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI  306 (611)
T ss_dssp             ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred             eeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcE
Confidence            221    112699999999999775  999999999999999988755443221111111111         11111111


Q ss_pred             EEee----ccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEe-e----------------------
Q 013717          199 TVRR----HKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESI-K----------------------  249 (437)
Q Consensus       199 ~~~~----~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~-~----------------------  249 (437)
                      .+..    .....+.+|...|++++|+|  ++|++++.|+.|++||+.+++....+ .                      
T Consensus       307 ~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~  386 (611)
T 1nr0_A          307 NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSW  386 (611)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEET
T ss_pred             EEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEc
Confidence            1111    11235568999999999998  89999999999999998876543221 0                      


Q ss_pred             -----------------------------------------------------------cccccEEEEEEecCCe-EEEE
Q 013717          250 -----------------------------------------------------------AHEDAVNAVAVSAGGT-VYTG  269 (437)
Q Consensus       250 -----------------------------------------------------------~~~~~v~~~~~~~~~~-l~~~  269 (437)
                                                                                 .+...+.+++|+|+++ |++|
T Consensus       387 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasg  466 (611)
T 1nr0_A          387 DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVG  466 (611)
T ss_dssp             TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEE
T ss_pred             CCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEe
Confidence                                                                       0224578899999999 9999


Q ss_pred             eCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEee--eecccccceE
Q 013717          270 SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTG--ALRGHGKAIL  347 (437)
Q Consensus       270 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~i~  347 (437)
                      +.|+.|++||+....  ...... .+|...|.+++|+|||++|++++.|++|++||+.+...   +..  ...+|...|.
T Consensus       467 s~D~~v~lwd~~~~~--~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~---~~~~~~~~~H~~~V~  540 (611)
T 1nr0_A          467 GQDSKVHVYKLSGAS--VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE---LAHTNSWTFHTAKVA  540 (611)
T ss_dssp             ETTSEEEEEEEETTE--EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE---ESCCCCCCCCSSCEE
T ss_pred             CCCCeEEEEEccCCc--eeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCc---eeeeeeeeeccccee
Confidence            999999999986432  122233 56899999999999999999999999999999976221   222  2345999999


Q ss_pred             EEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeee-eeecCC-CCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          348 CLINVAG--LLMSGSADRTVRIWQRGSDGRFGCL-AVLEGH-TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       348 ~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~h-~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      +++|+++  +|++|+.|++|++||+..+..  .+ ..+.+| ...|++++|+|++     + |++++.||+|++|++.
T Consensus       541 ~v~fspdg~~lasgs~D~~v~lW~~~~~~~--~~~~~~~~h~~~~v~~v~fs~d~-----~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          541 CVSWSPDNVRLATGSLDNSVIVWNMNKPSD--HPIIIKGAHAMSSVNSVIWLNET-----T-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTCTTS--CCEEETTSSTTSCEEEEEEEETT-----E-EEEEETTSCEEEEECC
T ss_pred             EEEECCCCCEEEEEECCCcEEEEECCCccc--ccchhhccCcccCeeEEEEcCCC-----E-EEEecCCCCEEEEecc
Confidence            9999865  999999999999999987652  33 567889 8999999999987     4 9999999999999974

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.9e-44  Score=322.17  Aligned_cols=287  Identities=17%  Similarity=0.180  Sum_probs=228.8

Q ss_pred             CccCCeEEEEee--CCEEEEEecCeEEEEeCCCCceeee------eccccCCCCcccEEEEEEeCCe-EEEEecCCeEEE
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSI------NTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRV  166 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~------~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~i  166 (437)
                      .|...|.+++|+  |++|++++++++++||.....+...      ........|...|.+++|+++. |++|+.||+|++
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~l  107 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVEL  107 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEE
T ss_pred             cccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEE
Confidence            577789999999  8999988854888887432100000      0000012356789999999766 999999999999


Q ss_pred             EeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcce
Q 013717          167 WQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRC  244 (437)
Q Consensus       167 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~  244 (437)
                      ||+++++......                          ....+|...|++++|++  ++|++|+.||+|++||++++++
T Consensus       108 Wd~~~~~~~~~~~--------------------------~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~  161 (344)
T 4gqb_B          108 WELDENETLIVSK--------------------------FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV  161 (344)
T ss_dssp             EEECTTSSCEEEE--------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             EeccCCCceeEee--------------------------ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            9999876443322                          12247999999999998  8999999999999999999999


Q ss_pred             EEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEe--eCccccEEEEEEccC-CCEEEEEeCCC
Q 013717          245 LESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATL--EKHKSAVNALALSDD-GTVLFSGACDR  319 (437)
Q Consensus       245 ~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~-~~~l~~~~~dg  319 (437)
                      +..+.+|...|++++|+|++.  |++++.||.|++||++...    ....+  ..+...+.+++|+|+ +++|++|+.||
T Consensus       162 ~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg  237 (344)
T 4gqb_B          162 LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK----PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG  237 (344)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS----CEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred             EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc----eeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence            999999999999999999885  7899999999999997654    23333  345567999999995 56889999999


Q ss_pred             cEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717          320 SILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT  396 (437)
Q Consensus       320 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~  396 (437)
                      .|++||+++++.    ...+.+|...|.+++|+++   +|++|+.|++|+|||+.+++    +..+.+|.+.|++++|+|
T Consensus       238 ~v~~wd~~~~~~----~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~----~~~~~~H~~~V~~v~~sp  309 (344)
T 4gqb_B          238 TVSLVDTKSTSC----VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE----LFRSQAHRDFVRDATWSP  309 (344)
T ss_dssp             EEEEEESCC--C----CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE----EEEECCCSSCEEEEEECS
T ss_pred             cEEEEECCCCcE----EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc----EEEEcCCCCCEEEEEEeC
Confidence            999999988764    3446789999999998753   79999999999999998754    456789999999999999


Q ss_pred             cCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          397 EEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       397 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      ++..    +|+++|.||+|++|++.++.
T Consensus       310 ~~~~----llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          310 LNHS----LLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             SSTT----EEEEEETTSCEEEEECCC--
T ss_pred             CCCe----EEEEEcCCCeEEEEECCCCC
Confidence            8865    78899999999999998753

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.3e-43  Score=317.74  Aligned_cols=303  Identities=20%  Similarity=0.316  Sum_probs=240.4

Q ss_pred             ceeeeec-CccC-CeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC
Q 013717           89 CINSVQL-GHKL-PIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD  161 (437)
Q Consensus        89 ~~~~~~~-~h~~-~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d  161 (437)
                      ..++..+ +|.+ .|.+++|+  +++||+|+.| .|+|||+.++.......+  ..+|...|.+++|+|+.  |++|+.|
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~--~~~h~~~v~~~~~sp~g~~l~s~s~D   82 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVL--SEGHQRTVRKVAWSPCGNYLASASFD   82 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEE--CSSCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeee--ccccCCcEEEEEECCCCCEEEEEECC
Confidence            3456667 8988 99999999  8999999999 999999988643322222  25799999999999765  9999999


Q ss_pred             CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEEC
Q 013717          162 CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRA  239 (437)
Q Consensus       162 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~  239 (437)
                      ++|++|++..+....                            ...+.+|...|.+++|+|  ++|++|+.|+.|++||+
T Consensus        83 ~~v~iw~~~~~~~~~----------------------------~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~  134 (345)
T 3fm0_A           83 ATTCIWKKNQDDFEC----------------------------VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEV  134 (345)
T ss_dssp             SCEEEEEECCC-EEE----------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             CcEEEEEccCCCeEE----------------------------EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEEC
Confidence            999999987653211                            122347999999999998  89999999999999999


Q ss_pred             CCcc---eEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE
Q 013717          240 SDLR---CLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG  315 (437)
Q Consensus       240 ~~~~---~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  315 (437)
                      .+++   ++..+..|...|.+++|+|++. |++|+.|+.|++||++..  .......+.+|...|.+++|+|+|++|+++
T Consensus       135 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~--~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~  212 (345)
T 3fm0_A          135 DEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED--DWVCCATLEGHESTVWSLAFDPSGQRLASC  212 (345)
T ss_dssp             CTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETT--EEEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCC--CEEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence            8763   4566778999999999999998 999999999999987543  223556788999999999999999999999


Q ss_pred             eCCCcEEEEECCCCccc-----------eEEeeeecc-cccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCC-----e
Q 013717          316 ACDRSILVWDREDSANH-----------MVVTGALRG-HGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGR-----F  376 (437)
Q Consensus       316 ~~dg~i~i~d~~~~~~~-----------~~~~~~~~~-~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~-----~  376 (437)
                      +.|++|++||.......           ......+.+ |...|.++++++.  .|++++.|+.|++|+......     +
T Consensus       213 s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~  292 (345)
T 3fm0_A          213 SDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF  292 (345)
T ss_dssp             ETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCE
T ss_pred             eCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeE
Confidence            99999999997432211           112223333 7888999998765  999999999999999875431     1


Q ss_pred             e-eeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCC
Q 013717          377 G-CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNS  427 (437)
Q Consensus       377 ~-~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  427 (437)
                      . ......+|...|++++|+|+++.    +|++|+.||+|++|++..+++..
T Consensus       293 ~~~~~~~~~h~~~V~~v~~~p~~~~----~laS~s~Dg~v~~W~~~~~~~~~  340 (345)
T 3fm0_A          293 SLTAHLHQAHSQDVNCVAWNPKEPG----LLASCSDDGEVAFWKYQRPEGLH  340 (345)
T ss_dssp             EEEEEETTSSSSCEEEEEECSSSTT----EEEEEETTSCEEEEEECC-----
T ss_pred             EEEeeecccccCcEeEeEEeCCCce----EEEEcCCCCcEEEEEecCCCCcc
Confidence            1 12334689999999999998754    89999999999999999887544

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.6e-43  Score=316.08  Aligned_cols=287  Identities=22%  Similarity=0.311  Sum_probs=240.0

Q ss_pred             eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCe
Q 013717           90 INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCK  163 (437)
Q Consensus        90 ~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~  163 (437)
                      .....+ +|.+.|.|++|+  +++|++|+.| .|++||..++....  .+   ..|...|.+++|+|+.  +++++.|+.
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~--~~---~~~~~~v~~~~~sp~g~~lasg~~d~~  129 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH--AV---TMPCTWVMACAYAPSGCAIACGGLDNK  129 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE--EE---ECSSSCCCEEEECTTSSEEEEESTTSE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce--EE---ecCCCCEEEEEECCCCCEEEEeeCCCC
Confidence            345566 999999999999  8999999999 99999998854333  33   3488899999999776  999999999


Q ss_pred             EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCC
Q 013717          164 IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASD  241 (437)
Q Consensus       164 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~  241 (437)
                      +++|++.........                        .....+.+|...|.+++|++  ..|++++.|++|++||+++
T Consensus       130 i~v~~~~~~~~~~~~------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~  185 (354)
T 2pbi_B          130 CSVYPLTFDKNENMA------------------------AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES  185 (354)
T ss_dssp             EEEEECCCCTTCCSG------------------------GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             EEEEEEecccccccc------------------------ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Confidence            999998754321110                        11223457999999999998  7899999999999999999


Q ss_pred             cceEEEeecccccEEEEEEecC--Ce-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC
Q 013717          242 LRCLESIKAHEDAVNAVAVSAG--GT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD  318 (437)
Q Consensus       242 ~~~~~~~~~~~~~v~~~~~~~~--~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  318 (437)
                      ++.+..+.+|...|.+++++|+  +. |++|+.||.|++||++..    +.+..+..|...|.+++|+|++++|++|+.|
T Consensus       186 ~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~----~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D  261 (354)
T 2pbi_B          186 GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG----QCVQAFETHESDVNSVRYYPSGDAFASGSDD  261 (354)
T ss_dssp             CCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC----cEEEEecCCCCCeEEEEEeCCCCEEEEEeCC
Confidence            9999999999999999999874  55 999999999999998764    3677788999999999999999999999999


Q ss_pred             CcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717          319 RSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT  396 (437)
Q Consensus       319 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~  396 (437)
                      ++|++||++..+....+.  ...+...+.++.++  +.+|++|+.|+.|++||+.+++   .+..+.+|.+.|++++|+|
T Consensus       262 ~~v~lwd~~~~~~~~~~~--~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~---~~~~l~~h~~~v~~l~~sp  336 (354)
T 2pbi_B          262 ATCRLYDLRADREVAIYS--KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS---RVSILFGHENRVSTLRVSP  336 (354)
T ss_dssp             SCEEEEETTTTEEEEEEC--CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS---EEEEECCCSSCEEEEEECT
T ss_pred             CeEEEEECCCCcEEEEEc--CCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc---eEEEEECCCCcEEEEEECC
Confidence            999999998765332221  12233456777776  4599999999999999998876   7788999999999999999


Q ss_pred             cCCCCceEEEEEecCCCcEEEEe
Q 013717          397 EEGQNGVVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       397 ~~~~~~~~~l~s~~~dg~i~iw~  419 (437)
                      ++.     +|++|+.||+|++|+
T Consensus       337 dg~-----~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          337 DGT-----AFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TSS-----CEEEEETTSEEEEEC
T ss_pred             CCC-----EEEEEcCCCCEEecC
Confidence            985     799999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=5.9e-43  Score=309.42  Aligned_cols=284  Identities=17%  Similarity=0.277  Sum_probs=236.7

Q ss_pred             eeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeE
Q 013717           91 NSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKI  164 (437)
Q Consensus        91 ~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i  164 (437)
                      ...++ +|.+.|.+++|+  +++|++|+.| .|++||+.++  ..+..+   ..|...|.+++|+++.  |++|+.|++|
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~l~s~s~d~~i   79 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ--VEVRSI---QVTETPVRAGKFIARKNWIIVGSDDFRI   79 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEE---ECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--ceeEEe---eccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence            44567 999999999999  8999999999 9999999985  344444   4689999999999665  9999999999


Q ss_pred             EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc
Q 013717          165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL  242 (437)
Q Consensus       165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~  242 (437)
                      ++||+.+++....                              +.+|...|.+++|+|  .++++|+.||+|++||++++
T Consensus        80 ~vwd~~~~~~~~~------------------------------~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~  129 (304)
T 2ynn_A           80 RVFNYNTGEKVVD------------------------------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN  129 (304)
T ss_dssp             EEEETTTCCEEEE------------------------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT
T ss_pred             EEEECCCCcEEEE------------------------------EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC
Confidence            9999998764332                              246999999999998  89999999999999999887


Q ss_pred             -ceEEEeecccccEEEEEEec-CCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEcc--CCCEEEEEeC
Q 013717          243 -RCLESIKAHEDAVNAVAVSA-GGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD--DGTVLFSGAC  317 (437)
Q Consensus       243 -~~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~  317 (437)
                       .....+.+|...|.+++|+| ++. |++|+.|+.|++||++....   .......+...+..+.|+|  ++.+|++|+.
T Consensus       130 ~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~  206 (304)
T 2ynn_A          130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---NFTLTTGQERGVNYVDYYPLPDKPYMITASD  206 (304)
T ss_dssp             TEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC---SEEEECCCTTCEEEEEECCSTTCCEEEEEET
T ss_pred             cchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc---cceeccCCcCcEEEEEEEEcCCCCEEEEEcC
Confidence             45567789999999999999 455 99999999999999875442   2222345667899999987  7789999999


Q ss_pred             CCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEE
Q 013717          318 DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAV  395 (437)
Q Consensus       318 dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~  395 (437)
                      |++|++||+++++    ....+.+|...|.++.++++  +|++|+.||+|++||+.+.+   ++..+..|...+.+++|+
T Consensus       207 D~~i~iWd~~~~~----~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~---~~~~~~~~~~~~~~~~~~  279 (304)
T 2ynn_A          207 DLTIKIWDYQTKS----CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK---VEKTLNVGLERSWCIATH  279 (304)
T ss_dssp             TSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC---EEEEECCSSSSEEEEEEC
T ss_pred             CCeEEEEeCCCCc----cceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---eeeeccCCCccEEEEEEC
Confidence            9999999998765    45557789999999988865  89999999999999999876   888999999999999999


Q ss_pred             ccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          396 TEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       396 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      |++..   .++++|+.| .+.+|++...
T Consensus       280 ~~~~~---~~~asg~~~-g~~~~~~~~~  303 (304)
T 2ynn_A          280 PTGRK---NYIASGFDN-GFTVLSLGND  303 (304)
T ss_dssp             TTCGG---GCEEEEETT-EEEEEECC--
T ss_pred             CCCCc---eEEEEecCC-ceEEEEeccC
Confidence            98753   246766655 5888887653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.6e-43  Score=338.08  Aligned_cols=315  Identities=18%  Similarity=0.244  Sum_probs=261.4

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTF  135 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~  135 (437)
                      ..+.|.|....+++.+ ++.+.+|+.... .....+ +|...|++++|+  |++||+|+.| +|+|||+.+++......+
T Consensus        22 ~~~~~spdg~~l~~~~-~~~v~l~~~~~~-~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~   99 (611)
T 1nr0_A           22 VVLGNTPAGDKIQYCN-GTSVYTVPVGSL-TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI   99 (611)
T ss_dssp             CCCEECTTSSEEEEEE-TTEEEEEETTCS-SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE
T ss_pred             eEEeeCCCCCEEEeCC-CCEEEEecCCCc-ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEee
Confidence            4578899999898876 569999999754 444556 999999999999  9999999999 999999976444333344


Q ss_pred             ccCCCCcccEEEEEEeCCe--EEEEecC----CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717          136 NDNDSSSGSVKSVTFCDGK--IFTAHQD----CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI  209 (437)
Q Consensus       136 ~~~~~h~~~v~~l~~~~~~--l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (437)
                         .+|.+.|.+++|+|+.  |++++.+    +.|++||..  +....                              +.
T Consensus       100 ---~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~--~~~~~------------------------------l~  144 (611)
T 1nr0_A          100 ---PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG--TSNGN------------------------------LT  144 (611)
T ss_dssp             ---ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC--CBCBC------------------------------CC
T ss_pred             ---cccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC--CCcce------------------------------ec
Confidence               5699999999999776  7777754    478888743  22211                              23


Q ss_pred             cCCCcEEEEEeCC--C-eEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcc
Q 013717          210 EHGDAVTGLAVNN--G-LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEK  285 (437)
Q Consensus       210 ~~~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~  285 (437)
                      +|...|.+++|+|  . .|++|+.|++|++||..+++++..+.+|...|.+++|+|++. |++|+.|+.|++||+..+. 
T Consensus       145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~-  223 (611)
T 1nr0_A          145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT-  223 (611)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-
T ss_pred             CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc-
Confidence            6999999999999  3 699999999999999999999999999999999999999998 9999999999999986543 


Q ss_pred             cceeeEEee-------CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEE
Q 013717          286 RHALIATLE-------KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMS  358 (437)
Q Consensus       286 ~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~  358 (437)
                         .+..+.       +|...|.+++|+|+|++|++++.|++|++||+++++....+.. ...+......+.+++..+++
T Consensus       224 ---~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s  299 (611)
T 1nr0_A          224 ---KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV-GTRIEDQQLGIIWTKQALVS  299 (611)
T ss_dssp             ---EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSGGGCEEEEEECSSCEEE
T ss_pred             ---EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecC-CCCccceeEEEEEcCCEEEE
Confidence               344442       6999999999999999999999999999999988764433321 12344556777888889999


Q ss_pred             EeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          359 GSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       359 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      ++.||.+++||...+.   +...+.+|...|++++|+|++.     +|++++.||.|++||+.++.
T Consensus       300 ~s~d~~i~~~~~~~~~---~~~~~~gh~~~v~~l~~spdg~-----~l~s~s~D~~v~~Wd~~~~~  357 (611)
T 1nr0_A          300 ISANGFINFVNPELGS---IDQVRYGHNKAITALSSSADGK-----TLFSADAEGHINSWDISTGI  357 (611)
T ss_dssp             EETTCCEEEEETTTTE---EEEEECCCSSCEEEEEECTTSS-----EEEEEETTSCEEEEETTTCC
T ss_pred             EeCCCcEEEEeCCCCC---cceEEcCCCCCEEEEEEeCCCC-----EEEEEeCCCcEEEEECCCCc
Confidence            9999999999998755   6778899999999999999884     89999999999999998764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.1e-43  Score=312.11  Aligned_cols=303  Identities=17%  Similarity=0.270  Sum_probs=230.4

Q ss_pred             eeeeec-CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEE
Q 013717           90 INSVQL-GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIR  165 (437)
Q Consensus        90 ~~~~~~-~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~  165 (437)
                      .++..+ +|.+.|.+++|++++||+|+.| .|++||+..+.......+. ..+|...|.+++|+|+.  |++++.|++|+
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~-~~~h~~~v~~v~~sp~~~~las~s~D~~v~   83 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLD-ETAHKKAIRSVAWRPHTSLLAAGSFDSTVS   83 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEEC-TTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEe-cCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence            455667 9999999999997799999999 9999999875433333331 12499999999999765  99999999999


Q ss_pred             EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCC--
Q 013717          166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASD--  241 (437)
Q Consensus       166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~--  241 (437)
                      +||+.........                       ......+.+|...|.+++|+|  ++|++|+.|++|++||+..  
T Consensus        84 iw~~~~~~~~~~~-----------------------~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~  140 (330)
T 2hes_X           84 IWAKEESADRTFE-----------------------MDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG  140 (330)
T ss_dssp             EEEC-------CC-----------------------CEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC
T ss_pred             EEEcccCcCcccc-----------------------ceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC
Confidence            9998643210000                       011233457999999999998  8999999999999999943  


Q ss_pred             --cceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccC--CCEEEEEe
Q 013717          242 --LRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD--GTVLFSGA  316 (437)
Q Consensus       242 --~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~  316 (437)
                        .+++..+.+|...|.+++|+|++. |++|+.|+.|++||+...  ....+..+.+|...|.+++|+|+  +.+|++|+
T Consensus       141 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s  218 (330)
T 2hes_X          141 EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD--DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS  218 (330)
T ss_dssp             CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT--EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE
T ss_pred             CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC--CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe
Confidence              256777889999999999999998 999999999999987532  23467788899999999999998  77999999


Q ss_pred             CCCcEEEEECCCCcc----ceEEeeeecc-cccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeee-eeecCCCC-C
Q 013717          317 CDRSILVWDREDSAN----HMVVTGALRG-HGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCL-AVLEGHTK-P  388 (437)
Q Consensus       317 ~dg~i~i~d~~~~~~----~~~~~~~~~~-~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~h~~-~  388 (437)
                      .|++|++||++.+..    .......+.+ |...|.+++++++ +|++++.||.|++||..+++ +..+ ..+.+|.. .
T Consensus       219 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~-~~~~~~~~~~h~~~~  297 (330)
T 2hes_X          219 DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGE-WKVFAKRALCHGVYE  297 (330)
T ss_dssp             TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTE-EEEEEEESCTTTTSC
T ss_pred             CCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCc-eEEEeccccccccce
Confidence            999999999865321    1123333443 8899999999855 89999999999999987653 2233 33467887 8


Q ss_pred             eeEEEEEcc-CCCCceEEEEEecCCCcEEEEeeccC
Q 013717          389 VKSLTAVTE-EGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       389 v~~l~~~~~-~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      |.+++|+|. ++    .+|++|+.||.|++|+++..
T Consensus       298 v~~v~~~~~~~~----~~las~s~Dg~v~~W~~~~~  329 (330)
T 2hes_X          298 INVVKWLELNGK----TILATGGDDGIVNFWSLEKA  329 (330)
T ss_dssp             EEEEEEC---------CCEEEEETTSEEEEEEC---
T ss_pred             EEEEEEecCCCc----eEEEEecCCCcEEEEEeccC
Confidence            999999994 22    37999999999999998753

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.8e-43  Score=322.76  Aligned_cols=297  Identities=14%  Similarity=0.247  Sum_probs=240.8

Q ss_pred             ceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCC
Q 013717           89 CINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDC  162 (437)
Q Consensus        89 ~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg  162 (437)
                      ..+...+ +|.+.|++++|+  +++|++|+.| +|+|||..++.  ....+   ..|...|.+++|+++.  |++|+.|+
T Consensus        56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~--~~~~~---~~h~~~v~~~~~s~~g~~las~~~d~  130 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ--KTHAI---KLHCPWVMECAFAPNGQSVACGGLDS  130 (380)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE--EEEEE---ECCCTTCCCCEECTTSSEEEECCSSS
T ss_pred             eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--cceEE---ecCCCCEEEEEECCCCCEEEEeeCCC
Confidence            4566677 999999999999  8999999999 99999999853  34444   4699999999999776  99999999


Q ss_pred             eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEEC
Q 013717          163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRA  239 (437)
Q Consensus       163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~  239 (437)
                      .+++|++.+........                       .....+.+|...|.++.|.+   ..|++|+.|++|++||+
T Consensus       131 ~v~iw~~~~~~~~~~~~-----------------------~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~  187 (380)
T 3iz6_a          131 ACSIFNLSSQADRDGNM-----------------------PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDV  187 (380)
T ss_dssp             CCEEEECCCCSSCCCSS-----------------------TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECT
T ss_pred             cEEEEECCCCccccCCc-----------------------cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEc
Confidence            99999997643111000                       01123357999999999987   57999999999999999


Q ss_pred             CCcceEEEe-----ecccccEEEEEEec-CCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEE
Q 013717          240 SDLRCLESI-----KAHEDAVNAVAVSA-GGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVL  312 (437)
Q Consensus       240 ~~~~~~~~~-----~~~~~~v~~~~~~~-~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  312 (437)
                      .+++.+..+     .+|...|.++++++ ++. +++|+.||.|++||++...   ..+..+.+|...|.+++|+|++++|
T Consensus       188 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~---~~~~~~~~h~~~v~~v~~~p~~~~l  264 (380)
T 3iz6_a          188 TTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS---RAVRTYHGHEGDINSVKFFPDGQRF  264 (380)
T ss_dssp             TTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC---CCCEEECCCSSCCCEEEECTTSSEE
T ss_pred             CCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC---cceEEECCcCCCeEEEEEecCCCeE
Confidence            999988877     47889999999987 566 9999999999999987432   3566788999999999999999999


Q ss_pred             EEEeCCCcEEEEECCCCccceEEeeee---cccccceEEEEee--CCEEEEEeCCCcEEEeeCCCCCCeeeeeee----c
Q 013717          313 FSGACDRSILVWDREDSANHMVVTGAL---RGHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFGCLAVL----E  383 (437)
Q Consensus       313 ~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~  383 (437)
                      ++|+.||+|++||+++++....+....   ..+...+.+++|+  +.+|++|+.||.|++||+..++   .+..+    .
T Consensus       265 ~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~---~~~~~~~~~~  341 (380)
T 3iz6_a          265 GTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE---MVLNLGTLQN  341 (380)
T ss_dssp             EEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC---EEEEECCSCS
T ss_pred             EEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc---eEEEEecccC
Confidence            999999999999999876443332211   1122336666665  5599999999999999998876   44444    6


Q ss_pred             CCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          384 GHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       384 ~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      +|.+.|++++|+|++.     +|++|+.||+|++|++....
T Consensus       342 ~h~~~v~~l~~s~dg~-----~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          342 SHEGRISCLGLSSDGS-----ALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             SCCCCCCEEEECSSSS-----EEEEECTTSCEEEEECCSSS
T ss_pred             CCCCceEEEEECCCCC-----EEEEeeCCCCEEEEecCCCc
Confidence            8999999999999985     89999999999999998653

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1e-41  Score=302.94  Aligned_cols=282  Identities=23%  Similarity=0.417  Sum_probs=237.2

Q ss_pred             ceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCC
Q 013717           89 CINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDC  162 (437)
Q Consensus        89 ~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg  162 (437)
                      ......+ +|.+.|.+++|+  +++|++|+.| .|++|+..+++.  ...+   .+|...|.+++|+++.  |++++.|+
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~--~~~~---~~h~~~v~~~~~~~~~~~l~s~~~d~   87 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTI---SGHKLGISDVAWSSDSNLLVSASDDK   87 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--EEEE---CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc--chhh---ccCCCceEEEEEcCCCCEEEEECCCC
Confidence            4455566 999999999999  8999999999 999999988543  3333   5799999999999765  99999999


Q ss_pred             eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECC
Q 013717          163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRAS  240 (437)
Q Consensus       163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~  240 (437)
                      .|++||+++++....                              +.+|...|.+++|++  +++++|+.||.|++||++
T Consensus        88 ~i~vwd~~~~~~~~~------------------------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  137 (312)
T 4ery_A           88 TLKIWDVSSGKCLKT------------------------------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK  137 (312)
T ss_dssp             EEEEEETTTCCEEEE------------------------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred             EEEEEECCCCcEEEE------------------------------EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence            999999987754332                              246899999999998  899999999999999999


Q ss_pred             CcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEe-eCccccEEEEEEccCCCEEEEEeCC
Q 013717          241 DLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATL-EKHKSAVNALALSDDGTVLFSGACD  318 (437)
Q Consensus       241 ~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d  318 (437)
                      +++.+..+..|...|.+++|+|++. +++++.||.|++||++...    .+..+ ..+...+..++|+|++++|++++.|
T Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  213 (312)
T 4ery_A          138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ----CLKTLIDDDNPPVSFVKFSPNGKYILAATLD  213 (312)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEEECCSSCCCEEEEEECTTSSEEEEEETT
T ss_pred             CCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----eeeEEeccCCCceEEEEECCCCCEEEEEcCC
Confidence            9999999999999999999999998 9999999999999987543    33333 4566789999999999999999999


Q ss_pred             CcEEEEECCCCccceEEeeeecccccce----EEEE-eeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEE
Q 013717          319 RSILVWDREDSANHMVVTGALRGHGKAI----LCLI-NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLT  393 (437)
Q Consensus       319 g~i~i~d~~~~~~~~~~~~~~~~~~~~i----~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~  393 (437)
                      |.|++||+++++.    ...+.+|....    ..+. .++.+|++|+.||.|++||+.+++   .+..+.+|...|.+++
T Consensus       214 ~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~  286 (312)
T 4ery_A          214 NTLKLWDYSKGKC----LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTA  286 (312)
T ss_dssp             TEEEEEETTTTEE----EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC---EEEEECCCSSCEEEEE
T ss_pred             CeEEEEECCCCcE----EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch---hhhhhhccCCcEEEEe
Confidence            9999999987753    33344554432    2222 235599999999999999999876   7889999999999999


Q ss_pred             EEccCCCCceEEEEEec--CCCcEEEEeec
Q 013717          394 AVTEEGQNGVVSVFSGS--LDGEIRAWQVS  421 (437)
Q Consensus       394 ~~~~~~~~~~~~l~s~~--~dg~i~iw~~~  421 (437)
                      |+|++.     +|++++  .|+.|++|+.+
T Consensus       287 ~~p~~~-----~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          287 CHPTEN-----IIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             ECSSSS-----EEEEEECTTTCCEEEEECC
T ss_pred             ecCcCC-----ceEEEEccCCccEEEecCC
Confidence            999885     688876  69999999975

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.3e-42  Score=305.32  Aligned_cols=286  Identities=22%  Similarity=0.357  Sum_probs=232.4

Q ss_pred             ceeeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC
Q 013717           89 CINSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD  161 (437)
Q Consensus        89 ~~~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d  161 (437)
                      ..+...+ +|.+.|.+++|+   +++|++|+.| +|++||+..........+..+.+|...|.+++|+++.  |++++.|
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D   86 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD   86 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence            3445567 999999999998   4799999999 9999998753222212222236899999999999765  9999999


Q ss_pred             CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEEC
Q 013717          162 CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRA  239 (437)
Q Consensus       162 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~  239 (437)
                      ++|++||+.+++....                              +.+|...|.+++|++  .++++|+.|++|++||+
T Consensus        87 ~~v~~wd~~~~~~~~~------------------------------~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~  136 (319)
T 3frx_A           87 KTLRLWDVATGETYQR------------------------------FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI  136 (319)
T ss_dssp             SEEEEEETTTTEEEEE------------------------------EECCSSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred             CEEEEEECCCCCeeEE------------------------------EccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            9999999998764332                              247999999999998  89999999999999999


Q ss_pred             CCcceEEEeecccccEEEEEEecC------Ce-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEE
Q 013717          240 SDLRCLESIKAHEDAVNAVAVSAG------GT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVL  312 (437)
Q Consensus       240 ~~~~~~~~~~~~~~~v~~~~~~~~------~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  312 (437)
                      + ++++..+.+|...|.++++.|.      +. +++++.|+.|++||++..    .....+.+|...|.+++|+|+|++|
T Consensus       137 ~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~----~~~~~~~~h~~~v~~~~~sp~g~~l  211 (319)
T 3frx_A          137 K-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF----QIEADFIGHNSNINTLTASPDGTLI  211 (319)
T ss_dssp             T-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT----EEEEEECCCCSCEEEEEECTTSSEE
T ss_pred             C-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc----hhheeecCCCCcEEEEEEcCCCCEE
Confidence            6 5677888899999999999984      33 999999999999998653    4667788999999999999999999


Q ss_pred             EEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeec-------
Q 013717          313 FSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLE-------  383 (437)
Q Consensus       313 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------  383 (437)
                      ++|+.||.|++||+++++....    +. +...+.+++|+++  +|++++.+ .+++|++....   .+..+.       
T Consensus       212 ~s~~~dg~i~iwd~~~~~~~~~----~~-~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~---~~~~~~~~~~~~~  282 (319)
T 3frx_A          212 ASAGKDGEIMLWNLAAKKAMYT----LS-AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQY---LVDDLRPEFAGYS  282 (319)
T ss_dssp             EEEETTCEEEEEETTTTEEEEE----EE-CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEE---EEEEECCCCTTCC
T ss_pred             EEEeCCCeEEEEECCCCcEEEE----ec-CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCe---eeeccCccccccc
Confidence            9999999999999987754332    33 2457888888766  77766654 59999998644   333332       


Q ss_pred             -CCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          384 -GHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       384 -~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                       .|...+.+++|+|++.     +|++|+.||.|++||+.++
T Consensus       283 ~~~~~~v~~~~~spdg~-----~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          283 KAAEPHAVSLAWSADGQ-----TLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             GGGCCCEEEEEECTTSS-----EEEEEETTSCEEEEEEEEC
T ss_pred             cCcCcceeEEEECCCCC-----EEEEeecCceEEEEEEeec
Confidence             3566899999999984     8999999999999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.8e-41  Score=327.43  Aligned_cols=301  Identities=25%  Similarity=0.434  Sum_probs=260.3

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTF  135 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~  135 (437)
                      ..+.+.|....+++.+.|+.+++|+.+.  .....+ +|...|.+++|+  +++|++++.| .|++||.....   +..+
T Consensus       266 ~~v~~~~d~~~l~~~~~d~~i~~w~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~---~~~~  340 (577)
T 2ymu_A          266 NGVAFRPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH---LQTL  340 (577)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE---EEEE
T ss_pred             EEEEEcCCCCEEEEEeCCCEEEEEeCCC--cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe---eEEE
Confidence            4678899999999999999999999753  455666 999999999999  8999999999 99999988743   2333


Q ss_pred             ccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717          136 NDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD  213 (437)
Q Consensus       136 ~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (437)
                         .+|...|.+++|+++.  |++++.||.|++||... +...                              .+.+|..
T Consensus       341 ---~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-~~~~------------------------------~~~~~~~  386 (577)
T 2ymu_A          341 ---TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQ------------------------------TLTGHSS  386 (577)
T ss_dssp             ---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-CEEE------------------------------EEECCSS
T ss_pred             ---eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-CEEE------------------------------EecCCCC
Confidence               5699999999999775  99999999999999643 2211                              2246899


Q ss_pred             cEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceee
Q 013717          214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALI  290 (437)
Q Consensus       214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~  290 (437)
                      .|.+++|+|  ++|++++.|+.|++||. +++.+..+..|...|++++|+|++. |++++.|+.|++||+..     +.+
T Consensus       387 ~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-----~~~  460 (577)
T 2ymu_A          387 SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-----QLL  460 (577)
T ss_dssp             CEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-----CEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-----CEE
Confidence            999999998  89999999999999995 6778888999999999999999998 99999999999998642     467


Q ss_pred             EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEe
Q 013717          291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIW  368 (437)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iw  368 (437)
                      ..+.+|...|.+++|+|++++|++++.|+.|++||.. ++    ....+.+|...|.+++++++  +|++++.||.|++|
T Consensus       461 ~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~----~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lw  535 (577)
T 2ymu_A          461 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ----LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW  535 (577)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SC----EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CC----EEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEE
Confidence            7788999999999999999999999999999999964 33    44556789999999988765  99999999999999


Q ss_pred             eCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717          369 QRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       369 d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~  419 (437)
                      |.. ++   ++..+.+|.+.|++++|+|++.     +|+|++.||+|++||
T Consensus       536 d~~-~~---~~~~~~~h~~~v~~~~fs~dg~-----~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          536 NRN-GQ---LLQTLTGHSSSVWGVAFSPDGQ-----TIASASSDKTVKLWN  577 (577)
T ss_dssp             CTT-SC---EEEEEECCSSCEEEEEECTTSS-----CEEEEETTSCEEEEC
T ss_pred             eCC-CC---EEEEEcCCCCCEEEEEEcCCCC-----EEEEEeCCCEEEEeC
Confidence            964 33   7889999999999999999985     799999999999997

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.7e-41  Score=309.79  Aligned_cols=293  Identities=27%  Similarity=0.447  Sum_probs=234.1

Q ss_pred             eecCccCCeEEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccC---------------CCCcccEEEEEEeCCe-
Q 013717           93 VQLGHKLPIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDN---------------DSSSGSVKSVTFCDGK-  154 (437)
Q Consensus        93 ~~~~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~---------------~~h~~~v~~l~~~~~~-  154 (437)
                      ..++|...|.|++|+  |++||+|+.+.+++|++.+++..  ..+...               ..+...|.+++|+++. 
T Consensus        59 ~~~~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~  136 (393)
T 1erj_A           59 KSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLV--ARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK  136 (393)
T ss_dssp             EEEECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEE--EEECC-----------------CCCCBEEEEEECTTSS
T ss_pred             EecCCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEE--EEecCccccccccccccccccCCCceeEEEEEECCCCC
Confidence            344899999999999  89999988559999999886432  222110               0123359999999765 


Q ss_pred             -EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECC
Q 013717          155 -IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWD  231 (437)
Q Consensus       155 -l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d  231 (437)
                       |++|+.|+.|++||+.+++....                              +.+|...|.+++|++  .+|++++.|
T Consensus       137 ~l~s~~~d~~i~iwd~~~~~~~~~------------------------------~~~h~~~v~~~~~~p~~~~l~s~s~d  186 (393)
T 1erj_A          137 FLATGAEDRLIRIWDIENRKIVMI------------------------------LQGHEQDIYSLDYFPSGDKLVSGSGD  186 (393)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEE------------------------------ECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEE------------------------------EccCCCCEEEEEEcCCCCEEEEecCC
Confidence             99999999999999987754332                              246999999999998  899999999


Q ss_pred             CcEEEEECCCcceEEEeecccccEEEEEEec-CCe-EEEEeCCCeEEEecCCCCcccceeeEEe-------eCccccEEE
Q 013717          232 KSLKIWRASDLRCLESIKAHEDAVNAVAVSA-GGT-VYTGSADRKIRVWAKPFNEKRHALIATL-------EKHKSAVNA  302 (437)
Q Consensus       232 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~-------~~~~~~i~~  302 (437)
                      ++|++||++++++...+. +...+.+++++| ++. +++|+.||.|++||++...    .+..+       .+|...|.+
T Consensus       187 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~----~~~~~~~~~~~~~~h~~~v~~  261 (393)
T 1erj_A          187 RTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF----LVERLDSENESGTGHKDSVYS  261 (393)
T ss_dssp             SEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC----EEEEEC------CCCSSCEEE
T ss_pred             CcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc----EEEeecccccCCCCCCCCEEE
Confidence            999999999998888776 567799999999 777 9999999999999987543    23333       568899999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCccc--------eEEeeeecccccceEEEEeeC--CEEEEEeCCCcEEEeeCCC
Q 013717          303 LALSDDGTVLFSGACDRSILVWDREDSANH--------MVVTGALRGHGKAILCLINVA--GLLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       303 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~i~iwd~~~  372 (437)
                      ++|+|+|++|++|+.||.|++||++.....        ......+.+|...|.++++++  .+|++|+.||.|++||+.+
T Consensus       262 v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~  341 (393)
T 1erj_A          262 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS  341 (393)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            999999999999999999999999764321        112345678999999888875  4999999999999999998


Q ss_pred             CCCeeeeeeecCCCCCeeEEEEEccCCC-CceEEEEEecCCCcEEEEeeccCCC
Q 013717          373 DGRFGCLAVLEGHTKPVKSLTAVTEEGQ-NGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       373 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      ++   ++..+.+|.+.|.+++|++.... +.+.+|++|+.||+|++|++...+|
T Consensus       342 ~~---~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~~p  392 (393)
T 1erj_A          342 GN---PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIAP  392 (393)
T ss_dssp             CC---EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC--
T ss_pred             Ce---EEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccccCC
Confidence            77   78889999999999999874210 1225899999999999999987644

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.2e-41  Score=304.71  Aligned_cols=286  Identities=20%  Similarity=0.318  Sum_probs=228.3

Q ss_pred             eeeeec-CccCCeEEEEe-----e---CCEEEEEecC-eEEEEeCCCCc-----eeeeeccccCCCCcccEEEEEEeCCe
Q 013717           90 INSVQL-GHKLPIGCIAV-----H---HNFLYAASSH-EINVYDRTGTT-----WTSINTFNDNDSSSGSVKSVTFCDGK  154 (437)
Q Consensus        90 ~~~~~~-~h~~~V~~l~~-----~---~~~l~s~~~d-~v~vwd~~~~~-----~~~~~~~~~~~~h~~~v~~l~~~~~~  154 (437)
                      .+...+ +|.+.|++++|     +   +++|++|+.| +|++||+..++     ......+   .+|...|.+++|+++.
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l---~~h~~~V~~~~~~~~~   88 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL---TGHNHFVSDLALSQEN   88 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEE---CCCSSCEEEEEECSST
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchh---ccCCCceEEEEECCCC
Confidence            455567 99999999999     3   7899999999 99999997642     1223333   6899999999999765


Q ss_pred             --EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC
Q 013717          155 --IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW  230 (437)
Q Consensus       155 --l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~  230 (437)
                        +++++.|++|++||+++++....                              +.+|...|.+++|+|  ++|++++.
T Consensus        89 ~~l~s~s~D~~v~lwd~~~~~~~~~------------------------------~~~h~~~v~~v~~sp~~~~l~s~~~  138 (343)
T 2xzm_R           89 CFAISSSWDKTLRLWDLRTGTTYKR------------------------------FVGHQSEVYSVAFSPDNRQILSAGA  138 (343)
T ss_dssp             TEEEEEETTSEEEEEETTSSCEEEE------------------------------EECCCSCEEEEEECSSTTEEEEEET
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEE------------------------------EcCCCCcEEEEEECCCCCEEEEEcC
Confidence              89999999999999988754332                              246999999999998  89999999


Q ss_pred             CCcEEEEECCCcceEEEee---cccccEEEEEEecCC----------e-EEEEeCCCeEEEecCCCCcccceeeEEeeCc
Q 013717          231 DKSLKIWRASDLRCLESIK---AHEDAVNAVAVSAGG----------T-VYTGSADRKIRVWAKPFNEKRHALIATLEKH  296 (437)
Q Consensus       231 dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~----------~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  296 (437)
                      |+.|++||+.. +......   .|...|.+++|+|++          . +++++.||.|++||...     .....+.+|
T Consensus       139 d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~h  212 (343)
T 2xzm_R          139 EREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-----QIRYTFKAH  212 (343)
T ss_dssp             TSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-----EEEEEEECC
T ss_pred             CCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-----ceeEEEcCc
Confidence            99999999974 3333333   688899999999986          4 99999999999998432     456678889


Q ss_pred             cccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCC
Q 013717          297 KSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGR  375 (437)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~  375 (437)
                      ...|.+++|+|+|++|++|+.||.|++||+.........   + .+...|.+++|+++ .+++++.|+.|++||+.+.+.
T Consensus       213 ~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~---~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~  288 (343)
T 2xzm_R          213 ESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE---F-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSK  288 (343)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEE---E-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCS
T ss_pred             cccceEEEECCCCCEEEEEcCCCeEEEEECCCCccccee---e-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCC
Confidence            999999999999999999999999999999544332221   1 23456888888866 344566788899999987652


Q ss_pred             eeeeeee-----------cCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          376 FGCLAVL-----------EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       376 ~~~~~~~-----------~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      .. +..+           .+|...|.+++|+|++.     +|++|+.||.|++|++++++
T Consensus       289 ~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-----~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          289 AP-VCTIEAEPITKAEGQKGKNPQCTSLAWNALGK-----KLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             CS-EEECCCCSGGGBTTBCCSCCCEEEEEECSSSC-----CEEEEETTSEEEEEEEEEEE
T ss_pred             Cc-eEEeecCcchhhhhhcCCCCceEEEEECCCCC-----eEEEecCCceEEEEEEEccC
Confidence            21 1122           27888999999999985     69999999999999998764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.3e-40  Score=309.08  Aligned_cols=308  Identities=22%  Similarity=0.368  Sum_probs=264.5

Q ss_pred             eeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCC
Q 013717           63 QTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDS  140 (437)
Q Consensus        63 ~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~  140 (437)
                      .+.++...+++++.||.|.+|+.... .+...+ +|...|.+++|++++|++|+.| .|++||+.++  +....+   .+
T Consensus       124 ~~~~~g~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~---~~  197 (445)
T 2ovr_B          124 CLQFCGNRIVSGSDDNTLKVWSAVTG-KCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG--ECIHTL---YG  197 (445)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTC-CEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT--EEEEEE---CC
T ss_pred             EEEEcCCEEEEEECCCcEEEEECCCC-cEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC--cEEEEE---CC
Confidence            35556788999999999999999764 455666 9999999999999999999999 9999999985  444444   57


Q ss_pred             CcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe
Q 013717          141 SSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV  220 (437)
Q Consensus       141 h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  220 (437)
                      |...|.++.++++.+++++.||.|++||+.+++....                              +.+|...|.++.+
T Consensus       198 h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~------------------------------~~~~~~~v~~~~~  247 (445)
T 2ovr_B          198 HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV------------------------------LMGHVAAVRCVQY  247 (445)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEE------------------------------EECCSSCEEEEEE
T ss_pred             CCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEE------------------------------EcCCcccEEEEEE
Confidence            9999999999998999999999999999987754332                              2368999999999


Q ss_pred             CCCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCcccc
Q 013717          221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSA  299 (437)
Q Consensus       221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  299 (437)
                      +++++++|+.||.|++||+++++.+..+..|...|.++++  ++. +++|+.||.|++||++..    +.+..+.+|...
T Consensus       248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~  321 (445)
T 2ovr_B          248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG----NCIHTLTGHQSL  321 (445)
T ss_dssp             CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC----CEEEEECCCCSC
T ss_pred             CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC----CEEEEEcCCccc
Confidence            8899999999999999999999999999999999999999  555 999999999999998754    367778889999


Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeee
Q 013717          300 VNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCL  379 (437)
Q Consensus       300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  379 (437)
                      +.++.++  +++|++|+.||.|++||+++++....+. ....|...|.++.+++++|++|+.||.|++||+.+++   .+
T Consensus       322 v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~  395 (445)
T 2ovr_B          322 TSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQ-GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE---FI  395 (445)
T ss_dssp             EEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC-STTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC---EE
T ss_pred             EEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEc-cCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCc---ee
Confidence            9988875  6799999999999999998876333221 1234888999999999999999999999999999887   45


Q ss_pred             eee-----cCCCCCeeEEEEEccCCCCceEEEEEecCCCc----EEEEeeccC
Q 013717          380 AVL-----EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGE----IRAWQVSVS  423 (437)
Q Consensus       380 ~~~-----~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~----i~iw~~~~~  423 (437)
                      ..+     .+|.+.|++++|+|++     .++++|+.||+    |.+||++..
T Consensus       396 ~~~~~~~~~~~~~~v~~~~~s~~~-----~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          396 RNLVTLESGGSGGVVWRIRASNTK-----LVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEEEECTTGGGTCEEEEEEECSSE-----EEEEEECSSSSSCCEEEEEECCCC
T ss_pred             eeeeccccCCCCceEEEEEecCCE-----EEEEEcccCCCCccEEEEEECCCC
Confidence            555     4688899999999987     58999999998    999999864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.3e-40  Score=299.58  Aligned_cols=292  Identities=21%  Similarity=0.296  Sum_probs=231.8

Q ss_pred             ceeeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC
Q 013717           89 CINSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD  161 (437)
Q Consensus        89 ~~~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d  161 (437)
                      ..+..+| ||.+.|++|+|+   +++|+||+.| +|+|||+...+.........+.+|...|.+++|+++.  |++++.|
T Consensus        28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d  107 (340)
T 4aow_A           28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD  107 (340)
T ss_dssp             EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence            3455678 999999999998   5799999999 9999999875432222222337899999999999765  9999999


Q ss_pred             CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEEC
Q 013717          162 CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRA  239 (437)
Q Consensus       162 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~  239 (437)
                      +.|++|+..........                              ..+...+..+.+.+  .++++++.|+.+++||+
T Consensus       108 ~~i~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~  157 (340)
T 4aow_A          108 GTLRLWDLTTGTTTRRF------------------------------VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT  157 (340)
T ss_dssp             SEEEEEETTTTEEEEEE------------------------------ECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             ccceEEeecccceeeee------------------------------cCCCCceeEEEEeecCccceeecCCCeEEEEEe
Confidence            99999999876543322                              24667777888877  89999999999999998


Q ss_pred             CCcceE-EEeecccccEEEEEEecCCe---EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE
Q 013717          240 SDLRCL-ESIKAHEDAVNAVAVSAGGT---VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG  315 (437)
Q Consensus       240 ~~~~~~-~~~~~~~~~v~~~~~~~~~~---l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  315 (437)
                      ...... .....|...+..++|++++.   +++++.|+.|++||++..    +....+.+|...|++++|+|++++|++|
T Consensus       158 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~  233 (340)
T 4aow_A          158 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC----KLKTNHIGHTGYLNTVTVSPDGSLCASG  233 (340)
T ss_dssp             TSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC----ceeeEecCCCCcEEEEEECCCCCEEEEE
Confidence            765443 33457889999999998764   789999999999988654    4677788999999999999999999999


Q ss_pred             eCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCee------eeeeecCCCCC
Q 013717          316 ACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFG------CLAVLEGHTKP  388 (437)
Q Consensus       316 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~------~~~~~~~h~~~  388 (437)
                      +.||.|++||+++.+....    +. +...+.++.++++ .+++++.|+.|++||++......      ......+|...
T Consensus       234 s~Dg~i~iwd~~~~~~~~~----~~-~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~  308 (340)
T 4aow_A          234 GKDGQAMLWDLNEGKHLYT----LD-GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ  308 (340)
T ss_dssp             ETTCEEEEEETTTTEEEEE----EE-CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCC
T ss_pred             eCCCeEEEEEeccCceeee----ec-CCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCC
Confidence            9999999999987653332    23 3456888888766 77788889999999998754111      11234578999


Q ss_pred             eeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          389 VKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       389 v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      |++++|+|++.     +|++|+.||.|+|||+++|.
T Consensus       309 v~~l~~s~dg~-----~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          309 CTSLAWSADGQ-----TLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEEEECTTSS-----EEEEEETTSCEEEEEEEC--
T ss_pred             EEEEEECCCCC-----EEEEEeCCCEEEEEeCCCcC
Confidence            99999999884     89999999999999999875

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4e-41  Score=310.14  Aligned_cols=270  Identities=23%  Similarity=0.381  Sum_probs=236.0

Q ss_pred             cccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeee
Q 013717           58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSIN  133 (437)
Q Consensus        58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~  133 (437)
                      +..++.|+|....+++++.||+|.+|+..... +...+ +|.+.|.+++|+  +++|++|+.| .|++||+.++  +.+.
T Consensus       110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~--~~~~  186 (410)
T 1vyh_C          110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGD-FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF--ECIR  186 (410)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTTCC-CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS--CEEE
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeE
Confidence            34578999999999999999999999997644 45566 999999999999  8999999999 9999999884  4455


Q ss_pred             ccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717          134 TFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH  211 (437)
Q Consensus       134 ~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (437)
                      .+   .+|...|.+++|+|+.  |++|+.|++|++||+.++.....                              +.+|
T Consensus       187 ~~---~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~------------------------------~~~h  233 (410)
T 1vyh_C          187 TM---HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT------------------------------FTGH  233 (410)
T ss_dssp             CC---CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE------------------------------EECC
T ss_pred             EE---cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE------------------------------EeCC
Confidence            55   6899999999999765  99999999999999988754332                              2469


Q ss_pred             CCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecC--------------------Ce-EEE
Q 013717          212 GDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAG--------------------GT-VYT  268 (437)
Q Consensus       212 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~-l~~  268 (437)
                      ...|.++.+++  .++++|+.|+.|++||+.++++...+..|...|.+++|+|+                    +. +++
T Consensus       234 ~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s  313 (410)
T 1vyh_C          234 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS  313 (410)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred             CccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE
Confidence            99999999988  89999999999999999999999999999999999999986                    44 999


Q ss_pred             EeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEE
Q 013717          269 GSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILC  348 (437)
Q Consensus       269 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~  348 (437)
                      |+.|+.|++||++..    ..+..+.+|...|.+++|+|+|++|++|+.||.|++||+.+++..    ..+.+|...|.+
T Consensus       314 gs~D~~i~iwd~~~~----~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~----~~~~~h~~~v~~  385 (410)
T 1vyh_C          314 GSRDKTIKMWDVSTG----MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM----KTLNAHEHFVTS  385 (410)
T ss_dssp             EETTSEEEEEETTTT----EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC----EEEECCSSCEEE
T ss_pred             EeCCCeEEEEECCCC----ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE----EEEcCCCCcEEE
Confidence            999999999998754    467788899999999999999999999999999999999877643    345679999999


Q ss_pred             EEeeCC--EEEEEeCCCcEEEeeCC
Q 013717          349 LINVAG--LLMSGSADRTVRIWQRG  371 (437)
Q Consensus       349 ~~~~~~--~l~~~~~dg~i~iwd~~  371 (437)
                      ++++++  +|++|+.||.|++|+++
T Consensus       386 l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          386 LDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            999866  99999999999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.1e-40  Score=317.84  Aligned_cols=303  Identities=25%  Similarity=0.436  Sum_probs=262.0

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTF  135 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~  135 (437)
                      .++.+.|....+++.+.|+.+++|+.+  ...+..+ +|...|.+++|+  +++|++++.| .|++||....   ....+
T Consensus       225 ~~~~~s~dg~~l~~~~~d~~i~~w~~~--~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~---~~~~~  299 (577)
T 2ymu_A          225 RGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ---LLQTL  299 (577)
T ss_dssp             EEEEECTTSSCEEEEETTSCEEEECTT--SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC---EEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEeCC--CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc---EEEEE
Confidence            467889999999999999999999964  3456666 999999999999  8899999999 9999998653   33333


Q ss_pred             ccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717          136 NDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD  213 (437)
Q Consensus       136 ~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (437)
                         .+|...|.+++|+++.  +++++.|++|++||.......                               .+.+|..
T Consensus       300 ---~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~-------------------------------~~~~~~~  345 (577)
T 2ymu_A          300 ---TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ-------------------------------TLTGHSS  345 (577)
T ss_dssp             ---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE-------------------------------EECCCSS
T ss_pred             ---ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE-------------------------------EEeCCCC
Confidence               5799999999999775  999999999999998754321                               1235889


Q ss_pred             cEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceee
Q 013717          214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALI  290 (437)
Q Consensus       214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~  290 (437)
                      .|.+++++|  .++++++.||.|++||. +++.+..+..|...|.+++|+|+++ |++++.|+.|++||...     +.+
T Consensus       346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-----~~~  419 (577)
T 2ymu_A          346 SVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-----QLL  419 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC-----CEE
T ss_pred             CEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-----CEE
Confidence            999999998  89999999999999995 6788888999999999999999999 99999999999998542     467


Q ss_pred             EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEe
Q 013717          291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIW  368 (437)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iw  368 (437)
                      ..+.+|...|.+++|+||+++|++++.|+.|++||... +    ....+.+|...|.+++++++  +|++++.|+.|++|
T Consensus       420 ~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~----~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw  494 (577)
T 2ymu_A          420 QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q----LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW  494 (577)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C----EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C----EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEE
Confidence            78889999999999999999999999999999999743 2    34456789999999988765  99999999999999


Q ss_pred             eCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          369 QRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       369 d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      |.. ++   ++..+.+|...|++++|+|++.     +|++++.||.|++||.+
T Consensus       495 ~~~-~~---~~~~~~~h~~~v~~l~~s~dg~-----~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          495 NRN-GQ---LLQTLTGHSSSVRGVAFSPDGQ-----TIASASDDKTVKLWNRN  538 (577)
T ss_dssp             ETT-SC---EEEEEECCSSCEEEEEECTTSS-----CEEEEETTSEEEEECTT
T ss_pred             cCC-CC---EEEEEeCCCCCEEEEEEcCCCC-----EEEEEECcCEEEEEeCC
Confidence            964 33   7889999999999999999885     79999999999999964

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-41  Score=315.41  Aligned_cols=324  Identities=15%  Similarity=0.150  Sum_probs=262.3

Q ss_pred             cccceeeccccc-ccccc----------CCCceeEEecCCCcc--eeeeecCccCCeEEEEee--CCEEEEEecC-eEEE
Q 013717           58 SNLSLQTLPSVP-SLQKL----------SPDETINFSSASHLC--INSVQLGHKLPIGCIAVH--HNFLYAASSH-EINV  121 (437)
Q Consensus        58 ~~~~~~~~~~~~-~~~s~----------s~dg~i~~~~~~~~~--~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~v  121 (437)
                      ....+.+.|... .+++.          +.|+.|++|+.....  .+...+.|...|.+++|+  +++|++|+.| .|++
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v   93 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL   93 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence            334677778765 77777          889999999997655  344555899999999998  8999999999 9999


Q ss_pred             EeCCCC--ceeeeeccccCCCCcccEEEEEEeCC-e--EEEEecCCeEEEEeCCCCcc------cccccccCccccceee
Q 013717          122 YDRTGT--TWTSINTFNDNDSSSGSVKSVTFCDG-K--IFTAHQDCKIRVWQLTPTKH------HKLKTTLPTVNDRLLR  190 (437)
Q Consensus       122 wd~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~-~--l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~  190 (437)
                      ||+...  .......+   .+|...|.+++|+++ .  |++++.||.|++||+.+++.      .....           
T Consensus        94 w~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-----------  159 (416)
T 2pm9_A           94 YSTNEANNAINSMARF---SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG-----------  159 (416)
T ss_dssp             ECCSSTTSCCCEEEEC---CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC-----------
T ss_pred             eecccccccccchhhc---cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccc-----------
Confidence            999872  12233333   579999999999965 3  99999999999999987751      11111           


Q ss_pred             ecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecc------cccEEEEEEe
Q 013717          191 FMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAH------EDAVNAVAVS  261 (437)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~  261 (437)
                                      .+..|...|.+++|++   .++++++.||.|++||+++++.+..+..+      ...|.+++|+
T Consensus       160 ----------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  223 (416)
T 2pm9_A          160 ----------------QSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH  223 (416)
T ss_dssp             ----------------CSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred             ----------------cccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC
Confidence                            1135889999999987   68999999999999999999998888765      7889999999


Q ss_pred             cCC-e-EEEEeCCC---eEEEecCCCCcccceeeEEee-CccccEEEEEEcc-CCCEEEEEeCCCcEEEEECCCCccceE
Q 013717          262 AGG-T-VYTGSADR---KIRVWAKPFNEKRHALIATLE-KHKSAVNALALSD-DGTVLFSGACDRSILVWDREDSANHMV  334 (437)
Q Consensus       262 ~~~-~-l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~  334 (437)
                      |++ . +++++.|+   .|++||++...   .....+. +|...|.+++|+| ++++|++++.||.|++||+++++    
T Consensus       224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~----  296 (416)
T 2pm9_A          224 PKNSTRVATATGSDNDPSILIWDLRNAN---TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE----  296 (416)
T ss_dssp             SSCTTEEEEEECCSSSCCCCEEETTSTT---SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC----
T ss_pred             CCCCCEEEEEECCCCCceEEEEeCCCCC---CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc----
Confidence            997 3 89999998   99999997643   2445566 7899999999999 99999999999999999998875    


Q ss_pred             EeeeecccccceEEEEeeC---CEEEEEeCCCcEEEeeCCCCCCeeee--------------------------------
Q 013717          335 VTGALRGHGKAILCLINVA---GLLMSGSADRTVRIWQRGSDGRFGCL--------------------------------  379 (437)
Q Consensus       335 ~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~--------------------------------  379 (437)
                      ....+.+|...|.++++++   .+|++++.||.|++||+.........                                
T Consensus       297 ~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (416)
T 2pm9_A          297 QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL  376 (416)
T ss_dssp             EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC
T ss_pred             cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc
Confidence            4445667888898888875   49999999999999999876521111                                


Q ss_pred             eeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          380 AVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       380 ~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      .....|..++.+++|+|++     ++|++++.||.|+||++.++
T Consensus       377 ~~~~~~~~~~~~~~~s~dg-----~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          377 QAPTWYGEPSPAAHWAFGG-----KLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             CCCSTTCCCSCCCEEETTT-----EEECBCTTSSCBCCBCCCCC
T ss_pred             cCCccccCCccceEEeeCC-----eEEEEeCCCCeEEEEEeccC
Confidence            0111267788999999998     58999999999999999865

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.5e-40  Score=294.40  Aligned_cols=269  Identities=17%  Similarity=0.227  Sum_probs=230.8

Q ss_pred             cceeeccc----cccccccCCCceeEEecCCCcc-eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCcee
Q 013717           60 LSLQTLPS----VPSLQKLSPDETINFSSASHLC-INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWT  130 (437)
Q Consensus        60 ~~~~~~~~----~~~~~s~s~dg~i~~~~~~~~~-~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~  130 (437)
                      .++.+.|.    ...+++++.|+++++|+..... .+...+ +|...|.+++|+  +.++++++.| .|++||+.++  +
T Consensus        36 ~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~--~  113 (321)
T 3ow8_A           36 WSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG--K  113 (321)
T ss_dssp             EEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--E
T ss_pred             EEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC--C
Confidence            45666653    4579999999999999986543 344556 999999999999  8899999999 9999999985  3


Q ss_pred             eeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceee
Q 013717          131 SINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLW  208 (437)
Q Consensus       131 ~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (437)
                      .+..+   ..|...+.+++|+|+.  |++++.||.|++|++++++....+                              
T Consensus       114 ~~~~~---~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~------------------------------  160 (321)
T 3ow8_A          114 QIKSI---DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL------------------------------  160 (321)
T ss_dssp             EEEEE---ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE------------------------------
T ss_pred             EEEEE---eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe------------------------------
Confidence            44444   4578889999999775  999999999999999877543222                              


Q ss_pred             ecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcc
Q 013717          209 IEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEK  285 (437)
Q Consensus       209 ~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~  285 (437)
                      ..|...|.+++|+|  ++|++|+.||.|++||+++++.+..+.+|...|.+++|+|++. |++|+.||.|++||++..  
T Consensus       161 ~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~--  238 (321)
T 3ow8_A          161 DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA--  238 (321)
T ss_dssp             ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC--
T ss_pred             cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc--
Confidence            35778899999998  8999999999999999999999999999999999999999998 999999999999998754  


Q ss_pred             cceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCC
Q 013717          286 RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADR  363 (437)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg  363 (437)
                        .....+.+|...|.+++|+|++++|++++.|++|++||+++++    ....+.+|...|.+++++++  +|++++.||
T Consensus       239 --~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~  312 (321)
T 3ow8_A          239 --NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT----CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ  312 (321)
T ss_dssp             --CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred             --ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE----EEEEEcCCCCcEEEEEECCCCCEEEEEeCCC
Confidence              3567788999999999999999999999999999999998765    44556789999999999865  999999999


Q ss_pred             cEEEeeCC
Q 013717          364 TVRIWQRG  371 (437)
Q Consensus       364 ~i~iwd~~  371 (437)
                      .|++||..
T Consensus       313 ~i~vwd~p  320 (321)
T 3ow8_A          313 EIHIYDCP  320 (321)
T ss_dssp             CEEEEECC
T ss_pred             eEEEEeCC
Confidence            99999964

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.7e-39  Score=290.47  Aligned_cols=316  Identities=15%  Similarity=0.227  Sum_probs=260.8

Q ss_pred             cccceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeec
Q 013717           58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINT  134 (437)
Q Consensus        58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~  134 (437)
                      ....+.+.|+...++....++.+..|...........++|...|.+++|+  +++|++++ | .|++||+.++.......
T Consensus        11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~   89 (337)
T 1gxr_A           11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVS   89 (337)
T ss_dssp             ECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSE
T ss_pred             ceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeee
Confidence            34578899999998888777777777776666666666999999999999  88999999 7 99999998753221111


Q ss_pred             cccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717          135 FNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG  212 (437)
Q Consensus       135 ~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (437)
                      .....+|...|.+++|+++.  |++++.||.|++||+.+++....                            ..+..|.
T Consensus        90 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~----------------------------~~~~~~~  141 (337)
T 1gxr_A           90 QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK----------------------------AELTSSA  141 (337)
T ss_dssp             EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE----------------------------EEEECSS
T ss_pred             cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCccee----------------------------eecccCC
Confidence            11113689999999999765  99999999999999987652111                            1224588


Q ss_pred             CcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCccccee
Q 013717          213 DAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHAL  289 (437)
Q Consensus       213 ~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~  289 (437)
                      ..|.+++|++  +++++++.||.|++||+++++.+..+..|...|.+++|+|++. +++++.||.|++||++...    .
T Consensus       142 ~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~----~  217 (337)
T 1gxr_A          142 PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR----Q  217 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE----E
T ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc----e
Confidence            9999999998  7999999999999999999999999999999999999999998 9999999999999987543    3


Q ss_pred             eEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEE
Q 013717          290 IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRI  367 (437)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~i  367 (437)
                      +..+ .+...+.+++|+|++++|++++.|+.|++||+++.+.     ..+..|...+.++.++++  +|++++.||.|++
T Consensus       218 ~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  291 (337)
T 1gxr_A          218 LQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA  291 (337)
T ss_dssp             EEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             Eeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-----EEEcCCccceeEEEECCCCCEEEEecCCCcEEE
Confidence            4444 3678899999999999999999999999999987642     235678899999998854  9999999999999


Q ss_pred             eeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          368 WQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       368 wd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      ||+.+++   .+. ...|...|.+++|+|++.     +|++++.||.|++|++.
T Consensus       292 ~~~~~~~---~~~-~~~~~~~v~~~~~s~~~~-----~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          292 WRTPYGA---SIF-QSKESSSVLSCDISVDDK-----YIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EETTTCC---EEE-EEECSSCEEEEEECTTSC-----EEEEEETTSCEEEEEEE
T ss_pred             EECCCCe---EEE-EecCCCcEEEEEECCCCC-----EEEEecCCCeEEEEEEe
Confidence            9999876   333 345889999999999884     79999999999999974

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.1e-40  Score=295.15  Aligned_cols=274  Identities=15%  Similarity=0.099  Sum_probs=220.6

Q ss_pred             cceeeccccccccccCCCceeEEecCC-----------CcceeeeecCccCCeEEEEee-CCEEEEEecC-eEEEEeCCC
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSAS-----------HLCINSVQLGHKLPIGCIAVH-HNFLYAASSH-EINVYDRTG  126 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~-----------~~~~~~~~~~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~  126 (437)
                      .++.|.|....+++.+ |+++++|+..           ....+...+.|...|.+++|+ .+.|++|+.| .|+|||+.+
T Consensus        34 ~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~  112 (344)
T 4gqb_B           34 EAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDE  112 (344)
T ss_dssp             EEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECT
T ss_pred             EEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccC
Confidence            4789999999888777 7777777631           111222223677899999999 7889999999 999999998


Q ss_pred             CceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeecc
Q 013717          127 TTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHK  204 (437)
Q Consensus       127 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (437)
                      ++......+ ...+|.+.|++++|+++.  |++|+.|++|++||+.+++....+                          
T Consensus       113 ~~~~~~~~~-~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~--------------------------  165 (344)
T 4gqb_B          113 NETLIVSKF-CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY--------------------------  165 (344)
T ss_dssp             TSSCEEEEE-EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--------------------------
T ss_pred             CCceeEeec-cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE--------------------------
Confidence            643332221 124799999999999765  999999999999999987644332                          


Q ss_pred             ceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEee--cccccEEEEEEecCCe--EEEEeCCCeEEE
Q 013717          205 KKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIK--AHEDAVNAVAVSAGGT--VYTGSADRKIRV  277 (437)
Q Consensus       205 ~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~--l~~~~~dg~v~i  277 (437)
                          .+|...|.+++|++   .++++++.|++|++||+++++....+.  .+...+.+++|+|++.  +++|+.||.|++
T Consensus       166 ----~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~  241 (344)
T 4gqb_B          166 ----RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSL  241 (344)
T ss_dssp             ----CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred             ----cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEE
Confidence                46999999999987   578999999999999999999888775  4566799999999654  789999999999


Q ss_pred             ecCCCCcccceeeEEeeCccccEEEEEEccCC-CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--
Q 013717          278 WAKPFNEKRHALIATLEKHKSAVNALALSDDG-TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--  354 (437)
Q Consensus       278 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--  354 (437)
                      ||++..    +.+..+.+|...|++++|+|++ ++|++|+.|++|+|||+++++    + ..+.+|...|.+++|+++  
T Consensus       242 wd~~~~----~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~----~-~~~~~H~~~V~~v~~sp~~~  312 (344)
T 4gqb_B          242 VDTKST----SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE----L-FRSQAHRDFVRDATWSPLNH  312 (344)
T ss_dssp             EESCC------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE----E-EEECCCSSCEEEEEECSSST
T ss_pred             EECCCC----cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc----E-EEEcCCCCCEEEEEEeCCCC
Confidence            998754    3677888999999999999998 589999999999999998764    2 235789999999999754  


Q ss_pred             -EEEEEeCCCcEEEeeCCCCC
Q 013717          355 -LLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       355 -~l~~~~~dg~i~iwd~~~~~  374 (437)
                       +|++++.||+|++|++.+..
T Consensus       313 ~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          313 SLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             TEEEEEETTSCEEEEECCC--
T ss_pred             eEEEEEcCCCeEEEEECCCCC
Confidence             78899999999999998744

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.1e-40  Score=291.92  Aligned_cols=243  Identities=23%  Similarity=0.356  Sum_probs=212.1

Q ss_pred             CCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717          139 DSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT  216 (437)
Q Consensus       139 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  216 (437)
                      .+|.+.|.+++|+|+.  |++++.||+|++||+.+++....+                              ..|..+|.
T Consensus        10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~------------------------------~~~~~~v~   59 (304)
T 2ynn_A           10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI------------------------------QVTETPVR   59 (304)
T ss_dssp             EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE------------------------------ECCSSCEE
T ss_pred             cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe------------------------------eccCCcEE
Confidence            5799999999999876  999999999999999887643322                              35889999


Q ss_pred             EEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEe
Q 013717          217 GLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATL  293 (437)
Q Consensus       217 ~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~  293 (437)
                      +++|++  ++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++. |++|+.||.|++||++...   .....+
T Consensus        60 ~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~---~~~~~~  136 (304)
T 2ynn_A           60 AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW---ALEQTF  136 (304)
T ss_dssp             EEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT---EEEEEE
T ss_pred             EEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc---chhhhh
Confidence            999988  8999999999999999999999999999999999999999998 9999999999999986542   355678


Q ss_pred             eCccccEEEEEEcc-CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee----CCEEEEEeCCCcEEEe
Q 013717          294 EKHKSAVNALALSD-DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV----AGLLMSGSADRTVRIW  368 (437)
Q Consensus       294 ~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~dg~i~iw  368 (437)
                      .+|...|.+++|+| ++.+|++|+.|++|++||++.......+   ..+|...+..+.+.    +.+|++|+.|++|++|
T Consensus       137 ~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iW  213 (304)
T 2ynn_A          137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL---TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW  213 (304)
T ss_dssp             CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE---ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEE
T ss_pred             cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee---ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence            89999999999999 6789999999999999999876654433   23455667777664    3499999999999999


Q ss_pred             eCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          369 QRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       369 d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      |+++++   ++..+.+|...|.+++|+|++.     +|++|+.||+|++||+.+++.
T Consensus       214 d~~~~~---~~~~~~~h~~~v~~~~~~p~~~-----~l~s~s~Dg~i~iWd~~~~~~  262 (304)
T 2ynn_A          214 DYQTKS---CVATLEGHMSNVSFAVFHPTLP-----IIISGSEDGTLKIWNSSTYKV  262 (304)
T ss_dssp             ETTTTE---EEEEEECCSSCEEEEEECSSSS-----EEEEEETTSCEEEEETTTCCE
T ss_pred             eCCCCc---cceeeCCCCCCEEEEEECCCCC-----EEEEEcCCCeEEEEECCCCce
Confidence            999865   8899999999999999999885     799999999999999987754

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=9.8e-40  Score=293.49  Aligned_cols=270  Identities=20%  Similarity=0.297  Sum_probs=230.9

Q ss_pred             cccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCce--ee
Q 013717           58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTW--TS  131 (437)
Q Consensus        58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~--~~  131 (437)
                      ...++.+.|....+++++.||+|++|+...... ...+ .|...|.+++|+  +++|++|+.| .|++||+.++..  ..
T Consensus        57 ~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~  135 (340)
T 1got_B           57 KIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRV  135 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-EEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc-ceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCccee
Confidence            335788999999999999999999999876544 4455 999999999999  8999999999 999999987422  23


Q ss_pred             eeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeec
Q 013717          132 INTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIE  210 (437)
Q Consensus       132 ~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (437)
                      ...+   .+|.+.|.++.|+++. +++++.|++|++||+.+++....+                              .+
T Consensus       136 ~~~~---~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~------------------------------~~  182 (340)
T 1got_B          136 SREL---AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF------------------------------TG  182 (340)
T ss_dssp             EEEE---ECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE------------------------------CC
T ss_pred             EEEe---cCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEE------------------------------cC
Confidence            3333   5799999999999655 999999999999999987643322                              36


Q ss_pred             CCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc
Q 013717          211 HGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH  287 (437)
Q Consensus       211 ~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~  287 (437)
                      |...|.+++|+|  .++++|+.||.|++||+++++++..+.+|...|++++|+|++. |++|+.||.|++||++...   
T Consensus       183 h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~---  259 (340)
T 1got_B          183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ---  259 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---
T ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc---
Confidence            999999999998  7999999999999999999999999999999999999999998 9999999999999987543   


Q ss_pred             eeeEEee--CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCC
Q 013717          288 ALIATLE--KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADR  363 (437)
Q Consensus       288 ~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg  363 (437)
                       .+..+.  .+...|.+++|+|+|++|++|+.||.|++||+.+++    ....+.+|...|.++.++++  +|++|+.||
T Consensus       260 -~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~----~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~  334 (340)
T 1got_B          260 -ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD----RAGVLAGHDNRVSCLGVTDDGMAVATGSWDS  334 (340)
T ss_dssp             -EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             -EEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc----EeeEeecCCCcEEEEEEcCCCCEEEEEcCCc
Confidence             333333  233579999999999999999999999999998765    44456789999999998865  999999999


Q ss_pred             cEEEee
Q 013717          364 TVRIWQ  369 (437)
Q Consensus       364 ~i~iwd  369 (437)
                      .|+|||
T Consensus       335 ~i~iWd  340 (340)
T 1got_B          335 FLKIWN  340 (340)
T ss_dssp             CEEEEC
T ss_pred             cEEecC
Confidence            999997

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-40  Score=304.24  Aligned_cols=330  Identities=11%  Similarity=0.107  Sum_probs=261.1

Q ss_pred             ccccceeeccccc-cccccCCCceeEEecC----CCcce-----eeeec-C----------ccCCeEEEEee--CCEEEE
Q 013717           57 QSNLSLQTLPSVP-SLQKLSPDETINFSSA----SHLCI-----NSVQL-G----------HKLPIGCIAVH--HNFLYA  113 (437)
Q Consensus        57 ~~~~~~~~~~~~~-~~~s~s~dg~i~~~~~----~~~~~-----~~~~~-~----------h~~~V~~l~~~--~~~l~s  113 (437)
                      ....++.+.|... .+++++.||.|.+|+.    .....     ....+ .          |.+.|.+++|+  +++|++
T Consensus        46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  125 (425)
T 1r5m_A           46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVT  125 (425)
T ss_dssp             SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEE
T ss_pred             CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEE
Confidence            3456889999999 9999999999999999    65442     22333 2          68899999999  899999


Q ss_pred             EecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceee
Q 013717          114 ASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLR  190 (437)
Q Consensus       114 ~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  190 (437)
                      |+.+ .|++||...   .....+   .+|...|.+++|+++.  |++++.||.|++||+.+++....+..........  
T Consensus       126 ~~~dg~i~i~~~~~---~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--  197 (425)
T 1r5m_A          126 GVENGELRLWNKTG---ALLNVL---NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI--  197 (425)
T ss_dssp             EETTSCEEEEETTS---CEEEEE---CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred             EeCCCeEEEEeCCC---Ceeeec---cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce--
Confidence            9999 999999443   334444   5699999999999765  9999999999999998876544433211000000  


Q ss_pred             ecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEE
Q 013717          191 FMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYT  268 (437)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~  268 (437)
                                   ...........+.++.|++ ..+++++.||.|++||+.+++.+..+..|...|.+++|+|++. |++
T Consensus       198 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  264 (425)
T 1r5m_A          198 -------------NAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS  264 (425)
T ss_dssp             ---------------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEE
T ss_pred             -------------eeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEE
Confidence                         0000011223378888888 8899999999999999999999999989999999999999998 999


Q ss_pred             EeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEE
Q 013717          269 GSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILC  348 (437)
Q Consensus       269 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~  348 (437)
                      ++.||.|++||++...    .+..+..|...|.+++|+|++ ++++++.||.|++||+++++    ....+..|...+.+
T Consensus       265 ~~~d~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~i~~  335 (425)
T 1r5m_A          265 ASDDGTLRIWHGGNGN----SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNT----LLALSIVDGVPIFA  335 (425)
T ss_dssp             EETTSCEEEECSSSBS----CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTE----EEEEEECTTCCEEE
T ss_pred             EcCCCEEEEEECCCCc----cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCc----EeEecccCCccEEE
Confidence            9999999999987543    566677899999999999999 99999999999999998765    44445678889999


Q ss_pred             EEeeCC--EEEEEeCCCcEEEeeCCCCC-----------------CeeeeeeecCCCC--CeeEEEEEccCCCCceEEEE
Q 013717          349 LINVAG--LLMSGSADRTVRIWQRGSDG-----------------RFGCLAVLEGHTK--PVKSLTAVTEEGQNGVVSVF  407 (437)
Q Consensus       349 ~~~~~~--~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~l~  407 (437)
                      +.++++  +|++++.||.|++||+.+.+                 ...++..+.+|..  .|++++|+|++.     +|+
T Consensus       336 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-----~l~  410 (425)
T 1r5m_A          336 GRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGN-----KIS  410 (425)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSS-----EEE
T ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCc-----eEE
Confidence            888754  99999999999999997643                 1126788889977  999999999984     799


Q ss_pred             EecCCCcEEEEeec
Q 013717          408 SGSLDGEIRAWQVS  421 (437)
Q Consensus       408 s~~~dg~i~iw~~~  421 (437)
                      +++.||.|++|+++
T Consensus       411 ~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          411 VAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEESSSCCEEEECC
T ss_pred             EEecCceEEEEeec
Confidence            99999999999986

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-39  Score=292.69  Aligned_cols=285  Identities=20%  Similarity=0.326  Sum_probs=232.2

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcce-eeee-c-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeee
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCI-NSVQ-L-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSIN  133 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~-~~~~-~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~  133 (437)
                      ..+.+.|....+++++.|++|++|+...... +... . +|...|.+++|+  +++|++|+.| .|++||...+..+...
T Consensus        20 ~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~   99 (345)
T 3fm0_A           20 WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVT   99 (345)
T ss_dssp             EEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEE
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEE
Confidence            4688999999999999999999999866542 2222 3 899999999999  8999999999 9999999886556666


Q ss_pred             ccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717          134 TFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH  211 (437)
Q Consensus       134 ~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (437)
                      .+   .+|...|.+++|+|+.  |++++.|++|++||+.++......                           ..+.+|
T Consensus       100 ~~---~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~---------------------------~~~~~h  149 (345)
T 3fm0_A          100 TL---EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV---------------------------SVLNSH  149 (345)
T ss_dssp             EE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEE---------------------------EEECCC
T ss_pred             Ec---cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEE---------------------------EEecCc
Confidence            65   6899999999999765  999999999999999876432222                           123469


Q ss_pred             CCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc--eEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcc-
Q 013717          212 GDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR--CLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEK-  285 (437)
Q Consensus       212 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~-  285 (437)
                      ...|.+++|+|  .+|++|+.|+.|++||.++++  +...+.+|...|++++|+|++. |++|+.||.|++||...... 
T Consensus       150 ~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~  229 (345)
T 3fm0_A          150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE  229 (345)
T ss_dssp             CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCC
Confidence            99999999998  899999999999999998775  4567789999999999999998 99999999999998632211 


Q ss_pred             ----------cceeeEEeeC-ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccc----eEE-eeeecccccceEEE
Q 013717          286 ----------RHALIATLEK-HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANH----MVV-TGALRGHGKAILCL  349 (437)
Q Consensus       286 ----------~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~-~~~~~~~~~~i~~~  349 (437)
                                ....+..+.+ |...|.+++|+|++..|++++.|+.|++|+.......    ..+ .....+|...|.++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v  309 (345)
T 3fm0_A          230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV  309 (345)
T ss_dssp             TCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEE
T ss_pred             ccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEe
Confidence                      1233444544 7889999999999999999999999999998754321    111 22346899999999


Q ss_pred             EeeCC---EEEEEeCCCcEEEeeCCCCC
Q 013717          350 INVAG---LLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       350 ~~~~~---~l~~~~~dg~i~iwd~~~~~  374 (437)
                      +|+++   +|++|+.||+|++|++...+
T Consensus       310 ~~~p~~~~~laS~s~Dg~v~~W~~~~~~  337 (345)
T 3fm0_A          310 AWNPKEPGLLASCSDDGEVAFWKYQRPE  337 (345)
T ss_dssp             EECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred             EEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence            99864   89999999999999999866

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.5e-39  Score=283.87  Aligned_cols=287  Identities=24%  Similarity=0.346  Sum_probs=244.3

Q ss_pred             Ccceeeeec-CccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC
Q 013717           87 HLCINSVQL-GHKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD  161 (437)
Q Consensus        87 ~~~~~~~~~-~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d  161 (437)
                      ...++...+ +|.+.|.+++|. +++|++|+.| .|++||+.++..  ...+   ..|...|.+++|+++.  |++++.|
T Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~--~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d   80 (313)
T 3odt_A            6 TGYQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWL--GTVV---YTGQGFLNSVCYDSEKELLLFGGKD   80 (313)
T ss_dssp             CCCEEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEE--EEEE---EECSSCEEEEEEETTTTEEEEEETT
T ss_pred             ccHHHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEE--EEEe---ecCCccEEEEEECCCCCEEEEecCC
Confidence            345667777 999999999998 9999999999 999999988533  3333   3589999999999765  9999999


Q ss_pred             CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCC
Q 013717          162 CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASD  241 (437)
Q Consensus       162 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~  241 (437)
                      |.|++|++..........                           .+.+|...|.++.++++++++++.||.|++||  .
T Consensus        81 g~i~~~~~~~~~~~~~~~---------------------------~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~  131 (313)
T 3odt_A           81 TMINGVPLFATSGEDPLY---------------------------TLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--E  131 (313)
T ss_dssp             SCEEEEETTCCTTSCC-C---------------------------EECCCSSCEEEEEEETTEEEEEETTSEEEEEE--T
T ss_pred             CeEEEEEeeecCCCCccc---------------------------chhhcccCEEEEEecCCEEEEEeCCCCEEEEc--C
Confidence            999999998754332222                           22469999999999889999999999999999  6


Q ss_pred             cceEEEeecccccEEEEEEec-CCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC-ccccEEEEEEccCCCEEEEEeCC
Q 013717          242 LRCLESIKAHEDAVNAVAVSA-GGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK-HKSAVNALALSDDGTVLFSGACD  318 (437)
Q Consensus       242 ~~~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d  318 (437)
                      ++.+..+..|...+.++++.| ++. +++++.||.|++||..      .....+.. |...+.+++|+|++. +++++.|
T Consensus       132 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~------~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d  204 (313)
T 3odt_A          132 GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND------KVIKTFSGIHNDVVRHLAVVDDGH-FISCSND  204 (313)
T ss_dssp             TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT------EEEEEECSSCSSCEEEEEEEETTE-EEEEETT
T ss_pred             CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC------ceEEEEeccCcccEEEEEEcCCCe-EEEccCC
Confidence            778888889999999999998 666 9999999999999832      34556666 889999999999998 9999999


Q ss_pred             CcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc
Q 013717          319 RSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE  397 (437)
Q Consensus       319 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~  397 (437)
                      |.|++||+++++    ....+.+|...+.++.++++ .|++++.||.|++||+.+++   ++..+..|...|.+++|+|+
T Consensus       205 g~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~  277 (313)
T 3odt_A          205 GLIKLVDMHTGD----VLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGS---LKQVITLPAISIWSVDCMSN  277 (313)
T ss_dssp             SEEEEEETTTCC----EEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCC---EEEEEECSSSCEEEEEECTT
T ss_pred             CeEEEEECCchh----hhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCc---eeEEEeccCceEEEEEEccC
Confidence            999999998776    44456779999999999876 89999999999999999876   78888999999999999998


Q ss_pred             CCCCceEEEEEecCCCcEEEEeeccCCCCC
Q 013717          398 EGQNGVVSVFSGSLDGEIRAWQVSVSCPNS  427 (437)
Q Consensus       398 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  427 (437)
                      +      .+++++.||.|++|+++.++...
T Consensus       278 ~------~~~~~~~dg~i~iw~~~~~~~~~  301 (313)
T 3odt_A          278 G------DIIVGSSDNLVRIFSQEKSRWAS  301 (313)
T ss_dssp             S------CEEEEETTSCEEEEESCGGGCCC
T ss_pred             C------CEEEEeCCCcEEEEeCCCCceee
Confidence            8      37789999999999999876544

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.4e-39  Score=299.21  Aligned_cols=296  Identities=14%  Similarity=0.138  Sum_probs=239.5

Q ss_pred             eeeeec-CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCc----eeeeeccccCCCCcccEEEEEEeCC--------e-
Q 013717           90 INSVQL-GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTT----WTSINTFNDNDSSSGSVKSVTFCDG--------K-  154 (437)
Q Consensus        90 ~~~~~~-~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~----~~~~~~~~~~~~h~~~v~~l~~~~~--------~-  154 (437)
                      .....+ +|.+.|++++|++++|++|+.| .|++||+.+++    ......+   .+|...|.+++|+++        . 
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH---FVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEE---ECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEE---ecCCCcEEEEEEecccccCCccccE
Confidence            344556 9999999999999999999999 99999999864    1233333   479999999999954        5 


Q ss_pred             EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC-----CCcEEEEEeC----C--C
Q 013717          155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH-----GDAVTGLAVN----N--G  223 (437)
Q Consensus       155 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~----~--~  223 (437)
                      |++++.||.|++||+.+++.....                         ....+..|     ...|.+++|+    +  .
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  138 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDETKKV-------------------------IFEKLDLLDSDMKKHSFWALKWGASNDRLLS  138 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCE-------------------------EEEEECCSCTTGGGSCEEEEEEECCC----C
T ss_pred             EEEEcCCCCEEEEEccCCcccccc-------------------------cceeecccccccCCCcEEEEEEeeccCCCCc
Confidence            999999999999999876531000                         00112245     5899999999    7  7


Q ss_pred             e-EEEEECCCcEEEEECCC------cceEE-----Eee-------cccccEEEEEEecCCeEEEEeCCCeEEEecCCCCc
Q 013717          224 L-IYSVSWDKSLKIWRASD------LRCLE-----SIK-------AHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNE  284 (437)
Q Consensus       224 ~-l~~~~~dg~i~iwd~~~------~~~~~-----~~~-------~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~  284 (437)
                      + |++++.||.|++||+.+      ++.+.     .+.       .|...|.+++|+|++.+++++.||.|++||++.. 
T Consensus       139 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~-  217 (397)
T 1sq9_A          139 HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL-  217 (397)
T ss_dssp             EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTT-
T ss_pred             eEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCC-
Confidence            8 99999999999999998      66665     663       4788999999999888888999999999998754 


Q ss_pred             ccceeeEEeeC---c---cccEEEEEEccCCCEEEEEeCC---CcEEEEECCCCccceEEeeeecc-------------c
Q 013717          285 KRHALIATLEK---H---KSAVNALALSDDGTVLFSGACD---RSILVWDREDSANHMVVTGALRG-------------H  342 (437)
Q Consensus       285 ~~~~~~~~~~~---~---~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~-------------~  342 (437)
                         +.+..+..   |   ...|.+++|+|++++|++++.|   |.|++||+++++.    ...+.+             |
T Consensus       218 ---~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~  290 (397)
T 1sq9_A          218 ---RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER----IGSLSVPTHSSQASLGEFAH  290 (397)
T ss_dssp             ---EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE----EEEECBC--------CCBSB
T ss_pred             ---ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc----cceeccCccccccccccccc
Confidence               46677777   8   8999999999999999999999   9999999987753    334555             8


Q ss_pred             ccceEEEEeeC--CEEEEEeCCCcEEEeeCCCCCCeeeeeeec------CC---------------CCCeeEEEEEccCC
Q 013717          343 GKAILCLINVA--GLLMSGSADRTVRIWQRGSDGRFGCLAVLE------GH---------------TKPVKSLTAVTEEG  399 (437)
Q Consensus       343 ~~~i~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~h---------------~~~v~~l~~~~~~~  399 (437)
                      ...|.++.+++  .+|++++.||.|++||+.+++   ++..+.      +|               ...|++++|+|++.
T Consensus       291 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~  367 (397)
T 1sq9_A          291 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE---RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW  367 (397)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc---eeEEEecccCcccchhhhhccccccccccCCceeEEEeccccc
Confidence            89999999874  499999999999999999866   677777      77               99999999999962


Q ss_pred             C-----CceEEEEEecCCCcEEEEeeccCC
Q 013717          400 Q-----NGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       400 ~-----~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      .     ....+|++++.||.|++|++++++
T Consensus       368 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          368 RSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             SBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             cccccccccceEEEecCCCcEEEEEcCCCC
Confidence            0     000289999999999999998763

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3e-39  Score=299.43  Aligned_cols=319  Identities=16%  Similarity=0.189  Sum_probs=250.1

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTF  135 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~  135 (437)
                      ..+.+.|....+++++.||.+.+|+...... ...+ +| ..+....++  +++|++|+.| .|++||+.++  +....+
T Consensus        60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~-~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~  135 (420)
T 3vl1_A           60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDG-SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN--LQREID  135 (420)
T ss_dssp             TTCEEEEEETTEEEEEETTEEEEEECCSEET-TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC--EEEEET
T ss_pred             cceeeeecCCeEEEEEcCCcEEEEEecccce-eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc--ceeeec
Confidence            3678999999999999999999999866433 3334 55 334444555  8999999999 9999999985  333333


Q ss_pred             ccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717          136 NDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD  213 (437)
Q Consensus       136 ~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (437)
                         .+|...|.+++|+++.  |++++.|+.|++||+.+++....                              +.+|..
T Consensus       136 ---~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~------------------------------~~~h~~  182 (420)
T 3vl1_A          136 ---QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT------------------------------LIGHRA  182 (420)
T ss_dssp             ---TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEE------------------------------EECCSS
T ss_pred             ---ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceE------------------------------EcCCCC
Confidence               5799999999999765  99999999999999987754332                              246999


Q ss_pred             cEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeec---ccccEEEE---------------------EEecCCe-E
Q 013717          214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKA---HEDAVNAV---------------------AVSAGGT-V  266 (437)
Q Consensus       214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~---------------------~~~~~~~-l  266 (437)
                      .|.+++|+|  ++|++++.||.|++||+++++.+..+..   +...|.++                     +|+|++. +
T Consensus       183 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  262 (420)
T 3vl1_A          183 TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYV  262 (420)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEE
Confidence            999999998  8999999999999999999999888874   34445554                     4578888 9


Q ss_pred             EEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCC-EEEEEeCCCcEEEEECCCCccceEEeeeecccccc
Q 013717          267 YTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGT-VLFSGACDRSILVWDREDSANHMVVTGALRGHGKA  345 (437)
Q Consensus       267 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  345 (437)
                      ++|+.||.|++||++...   ........|...|.+++|+|+++ +|++|+.||.|++||+++++......  ...|...
T Consensus       263 ~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~--~~~~~~~  337 (420)
T 3vl1_A          263 IAGHVSGVITVHNVFSKE---QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF--LINEGTP  337 (420)
T ss_dssp             EEEETTSCEEEEETTTCC---EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE--EESTTSC
T ss_pred             EEEcCCCeEEEEECCCCc---eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhh--hccCCCC
Confidence            999999999999987654   22333345788999999999999 99999999999999999875422221  1226677


Q ss_pred             eEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCe------eeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEE
Q 013717          346 ILCLINVAG-LLMSGSADRTVRIWQRGSDGRF------GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAW  418 (437)
Q Consensus       346 i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  418 (437)
                      +.++.+.+. +|++++.||.|++|++......      .....+.+|.+.|.+++|+|++... + .+++++.+|.+.+|
T Consensus       338 v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-g-~l~a~g~~g~~~~~  415 (420)
T 3vl1_A          338 INNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESN-G-EVLEVGKNNFCALY  415 (420)
T ss_dssp             EEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSS-C-EEEEEETTTEEEEE
T ss_pred             ceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCc-c-eEEEEcCCceEEEE
Confidence            777776644 9999999999999999875422      1233566789999999999988411 1 47777788999999


Q ss_pred             eecc
Q 013717          419 QVSV  422 (437)
Q Consensus       419 ~~~~  422 (437)
                      +++.
T Consensus       416 ~~~~  419 (420)
T 3vl1_A          416 NLSN  419 (420)
T ss_dssp             ESCC
T ss_pred             eccC
Confidence            9875

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.6e-38  Score=295.20  Aligned_cols=277  Identities=27%  Similarity=0.457  Sum_probs=242.5

Q ss_pred             eeec-CccCC-eEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEe
Q 013717           92 SVQL-GHKLP-IGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQ  168 (437)
Q Consensus        92 ~~~~-~h~~~-V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd  168 (437)
                      ...+ +|.+. +.|+.+++++|++|+.| .|++||+.++  +....+   .+|.+.|.+++|+++.+++|+.||+|++||
T Consensus       111 ~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~--~~~~~~---~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd  185 (445)
T 2ovr_B          111 PKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTG--KCLRTL---VGHTGGVWSSQMRDNIIISGSTDRTLKVWN  185 (445)
T ss_dssp             CEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTC--CEEEEC---CCCSSCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             eEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCC--cEEEEE---cCCCCCEEEEEecCCEEEEEeCCCeEEEEE
Confidence            3455 99886 58888889999999999 9999999985  444444   579999999999988899999999999999


Q ss_pred             CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEe
Q 013717          169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESI  248 (437)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  248 (437)
                      +.+++....+                              .+|...|.++.++++.+++|+.||.|++||+.+++.+..+
T Consensus       186 ~~~~~~~~~~------------------------------~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~  235 (445)
T 2ovr_B          186 AETGECIHTL------------------------------YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL  235 (445)
T ss_dssp             TTTTEEEEEE------------------------------CCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred             CCcCcEEEEE------------------------------CCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence            9987644332                              3699999999999999999999999999999999999999


Q ss_pred             ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECC
Q 013717          249 KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE  327 (437)
Q Consensus       249 ~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  327 (437)
                      ..|...|.++++  ++. +++|+.||.|++||++..    ..+..+.+|...|.+++|  +++++++++.||.|++||++
T Consensus       236 ~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~  307 (445)
T 2ovr_B          236 MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE----TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE  307 (445)
T ss_dssp             ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT----EEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETT
T ss_pred             cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC----cEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECC
Confidence            999999999999  555 999999999999987643    467788889999999999  78899999999999999998


Q ss_pred             CCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecC---CCCCeeEEEEEccCCCCceE
Q 013717          328 DSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEG---HTKPVKSLTAVTEEGQNGVV  404 (437)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~~~~  404 (437)
                      +++    ....+.+|...+.++.++++++++|+.||.|++||+++++   ++..+.+   |...|++++|++.       
T Consensus       308 ~~~----~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~-------  373 (445)
T 2ovr_B          308 TGN----CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ---CLQTLQGPNKHQSAVTCLQFNKN-------  373 (445)
T ss_dssp             TCC----EEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCC---EEEEECSTTSCSSCEEEEEECSS-------
T ss_pred             CCC----EEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCc---EEEEEccCCCCCCCEEEEEECCC-------
Confidence            876    4445678899999999999999999999999999999876   6666665   8899999999642       


Q ss_pred             EEEEecCCCcEEEEeeccCCC
Q 013717          405 SVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       405 ~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      +|++|+.||.|++||+.+++.
T Consensus       374 ~l~s~~~dg~v~iwd~~~~~~  394 (445)
T 2ovr_B          374 FVITSSDDGTVKLWDLKTGEF  394 (445)
T ss_dssp             EEEEEETTSEEEEEETTTCCE
T ss_pred             EEEEEeCCCeEEEEECCCCce
Confidence            799999999999999998764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.5e-38  Score=291.04  Aligned_cols=291  Identities=15%  Similarity=0.119  Sum_probs=230.3

Q ss_pred             ceeeeec-CccCCeEEEEee--C-CEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC-Ce--EEEEec
Q 013717           89 CINSVQL-GHKLPIGCIAVH--H-NFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD-GK--IFTAHQ  160 (437)
Q Consensus        89 ~~~~~~~-~h~~~V~~l~~~--~-~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~--l~s~~~  160 (437)
                      ......+ +|...|.+++|+  + ++|++|+.| .|++||+.++........   .+|...|.+++|++ +.  |++++.
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~l~s~~~  139 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG---MGPGDAITGMKFNQFNTNQLFVSSI  139 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC---CSTTCBEEEEEEETTEEEEEEEEET
T ss_pred             cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec---CCcCCceeEEEeCCCCCCEEEEEeC
Confidence            3444566 999999999999  5 899999999 999999998655444433   46999999999998 43  999999


Q ss_pred             CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEE
Q 013717          161 DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWR  238 (437)
Q Consensus       161 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd  238 (437)
                      |+.|++||+.+.. ...+...                           ..|...|.+++|++  .++++|+.||.|++||
T Consensus       140 d~~i~iwd~~~~~-~~~~~~~---------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  191 (383)
T 3ei3_B          140 RGATTLRDFSGSV-IQVFAKT---------------------------DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLG  191 (383)
T ss_dssp             TTEEEEEETTSCE-EEEEECC---------------------------CCSSCCEEEEEEETTTTEEEEEETTSEEEEEE
T ss_pred             CCEEEEEECCCCc-eEEEecc---------------------------CCCCCCeEEEEECCCCCEEEEECCCCCEEEEE
Confidence            9999999998532 1111110                           13568899999998  8999999999999999


Q ss_pred             CCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEcc-CCCEEEEE
Q 013717          239 ASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD-DGTVLFSG  315 (437)
Q Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~  315 (437)
                      + +++.+..+..|...|.+++|+|++.  +++++.|+.|++||++........+..+ +|...|.+++|+| ++++|+++
T Consensus       192 ~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~  269 (383)
T 3ei3_B          192 L-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTT  269 (383)
T ss_dssp             T-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEE
T ss_pred             C-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEE
Confidence            9 5778889999999999999999986  8999999999999998644444555555 5899999999999 99999999


Q ss_pred             eCCCcEEEEECCCCccceEEeeee---ccccc----------ceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeee
Q 013717          316 ACDRSILVWDREDSANHMVVTGAL---RGHGK----------AILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV  381 (437)
Q Consensus       316 ~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~----------~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~  381 (437)
                      +.|+.|++||+++++....+....   ..|..          .+..+.++++ .+ +|+.||.|++||+.+++   ++..
T Consensus       270 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~---~~~~  345 (383)
T 3ei3_B          270 DQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGG---LVHQ  345 (383)
T ss_dssp             ESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCC---EEEE
T ss_pred             cCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCc---eeee
Confidence            999999999999876654443221   11222          2233333322 22 77899999999999877   6777


Q ss_pred             ecC--CCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717          382 LEG--HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       382 ~~~--h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                      +.+  |...+..++|+|++.     +|++|+ ||.|++||+++
T Consensus       346 l~~~~~~~~~~~~~~s~~g~-----~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          346 LRDPNAAGIISLNKFSPTGD-----VLASGM-GFNILIWNRED  382 (383)
T ss_dssp             ECBTTBCSCCCEEEECTTSS-----EEEEEE-TTEEEEEECC-
T ss_pred             ecCCCCCceEEEEEEecCcc-----EEEEec-CCcEEEEecCC
Confidence            776  567788889999884     788887 99999999975

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.6e-39  Score=293.11  Aligned_cols=293  Identities=16%  Similarity=0.231  Sum_probs=235.0

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCC
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLT  170 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~  170 (437)
                      .|.++|.+++|+  +++|++|+.+ .|++||+.+++......+   .+|...|.+++|+++.  |++++.||.|++||+.
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL---KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE---ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee---cCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence            689999999999  8999999999 999999998754456665   5799999999999665  9999999999999998


Q ss_pred             CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcce---E
Q 013717          171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRC---L  245 (437)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~---~  245 (437)
                      +++......                            +..|...|.+++|++  +++++++.||.|++||+..++.   .
T Consensus        83 ~~~~~~~~~----------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~  134 (372)
T 1k8k_C           83 GRTWKPTLV----------------------------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC  134 (372)
T ss_dssp             TTEEEEEEE----------------------------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred             CCeeeeeEE----------------------------eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee
Confidence            765322221                            134888999999998  8999999999999999988763   3


Q ss_pred             EEe-ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCC--------------cccceeeEEeeCccccEEEEEEccCC
Q 013717          246 ESI-KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFN--------------EKRHALIATLEKHKSAVNALALSDDG  309 (437)
Q Consensus       246 ~~~-~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~--------------~~~~~~~~~~~~~~~~i~~~~~~~~~  309 (437)
                      ..+ ..|...|.+++|+|++. +++++.||.|++||++..              ......+..+..|...|.+++|+|++
T Consensus       135 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  214 (372)
T 1k8k_C          135 KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG  214 (372)
T ss_dssp             EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS
T ss_pred             eeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC
Confidence            333 46789999999999998 999999999999997421              12345677788899999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCC--CC-----------
Q 013717          310 TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGS--DG-----------  374 (437)
Q Consensus       310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~--~~-----------  374 (437)
                      ++|++++.||.|++||+++++    ....+..|...+.++.++++  +|++| .|+.|++|++..  +.           
T Consensus       215 ~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~  289 (372)
T 1k8k_C          215 SRVAWVSHDSTVCLADADKKM----AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPK  289 (372)
T ss_dssp             SEEEEEETTTEEEEEEGGGTT----EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-
T ss_pred             CEEEEEeCCCEEEEEECCCCc----eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccc
Confidence            999999999999999998776    34445678888988888754  66655 999999999987  31           


Q ss_pred             ------------------Ceeee------eee-cCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          375 ------------------RFGCL------AVL-EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       375 ------------------~~~~~------~~~-~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                                        .....      ..+ .+|..+|++++|.+.++ .+..+|++|+.||.|++|++++++.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g-~~~~~l~s~~~Dg~i~~W~~~~~~~  364 (372)
T 1k8k_C          290 QSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK-AKCSQFCTTGMDGGMSIWDVRSLES  364 (372)
T ss_dssp             -------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTT-TSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred             cchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCC-cceeeEEEecCCCceEEEEecChhH
Confidence                              00010      233 48999999999886543 0001899999999999999987653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=7.7e-39  Score=297.77  Aligned_cols=276  Identities=25%  Similarity=0.427  Sum_probs=233.4

Q ss_pred             CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcc
Q 013717           96 GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKH  174 (437)
Q Consensus        96 ~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~  174 (437)
                      +|...|.|+++++++|++|+.| .|++||+.++  +....+   .+|...|.+++|.++.|++|+.||+|++||+.+++.
T Consensus       131 ~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~--~~~~~~---~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~  205 (435)
T 1p22_A          131 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL--ECKRIL---TGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEM  205 (435)
T ss_dssp             SSCCCEEEEECCSSEEEEEESSSCEEEEESSSC--CEEEEE---CCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCE
T ss_pred             CCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCC--eEEEEE---cCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcE
Confidence            7888999999999999999999 9999999985  344444   579999999999777799999999999999998764


Q ss_pred             cccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceE---EEeecc
Q 013717          175 HKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCL---ESIKAH  251 (437)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~  251 (437)
                      ...+                              .+|...|.+++++++.+++|+.||.|++||+.+++..   ..+.+|
T Consensus       206 ~~~~------------------------------~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  255 (435)
T 1p22_A          206 LNTL------------------------------IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH  255 (435)
T ss_dssp             EEEE------------------------------CCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCC
T ss_pred             EEEE------------------------------cCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCC
Confidence            3332                              3589999999999999999999999999999988765   566789


Q ss_pred             cccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 013717          252 EDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSA  330 (437)
Q Consensus       252 ~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  330 (437)
                      ...|.++++  ++. +++|+.||.|++||++..    +.+..+.+|...|.++.++  ++++++|+.||.|++||+++++
T Consensus       256 ~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~  327 (435)
T 1p22_A          256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC----EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGA  327 (435)
T ss_dssp             SSCEEEEEE--ETTEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC
T ss_pred             CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC----cEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCC
Confidence            999999999  444 999999999999998754    4677888999999999994  6799999999999999998876


Q ss_pred             cceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCC------eeeeeeecCCCCCeeEEEEEccCCCCceE
Q 013717          331 NHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGR------FGCLAVLEGHTKPVKSLTAVTEEGQNGVV  404 (437)
Q Consensus       331 ~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~  404 (437)
                          ....+.+|...|.++.+++.+|++|+.||.|++||+..+..      ..++..+.+|.+.|++++|  ++.     
T Consensus       328 ----~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-----  396 (435)
T 1p22_A          328 ----CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEF-----  396 (435)
T ss_dssp             ----EEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSS-----
T ss_pred             ----EEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCC-----
Confidence                44556789999999999999999999999999999865431      1167888999999999999  332     


Q ss_pred             EEEEecCCCcEEEEeeccCCC
Q 013717          405 SVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       405 ~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      +|++++.||.|++||+..+..
T Consensus       397 ~l~s~s~Dg~i~iwd~~~~~~  417 (435)
T 1p22_A          397 QIVSSSHDDTILIWDFLNDPA  417 (435)
T ss_dssp             CEEECCSSSEEEEEC------
T ss_pred             EEEEEeCCCEEEEEECCCCCC
Confidence            699999999999999987754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.8e-38  Score=284.14  Aligned_cols=284  Identities=17%  Similarity=0.265  Sum_probs=238.3

Q ss_pred             eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCe
Q 013717           90 INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCK  163 (437)
Q Consensus        90 ~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~  163 (437)
                      .....+ +|.+.|++++|+  +++|++|+.| .|++||+.++  +....+   .+|...|.+++|+++.  |++++.||.
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~dg~   97 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--ERLGTL---DGHTGTIWSIDVDCFTKYCVTGSADYS   97 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC--CEEEEE---CCCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred             cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--hhhhhh---hhcCCcEEEEEEcCCCCEEEEEeCCCe
Confidence            333445 999999999999  8999999999 9999999885  444444   5799999999999764  999999999


Q ss_pred             EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECC-----CcEEE
Q 013717          164 IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWD-----KSLKI  236 (437)
Q Consensus       164 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d-----g~i~i  236 (437)
                      |++||+.+++......                               +...|.+++|++  .++++++.+     |.|++
T Consensus        98 i~iwd~~~~~~~~~~~-------------------------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~  146 (369)
T 3zwl_B           98 IKLWDVSNGQCVATWK-------------------------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINI  146 (369)
T ss_dssp             EEEEETTTCCEEEEEE-------------------------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEE
T ss_pred             EEEEECCCCcEEEEee-------------------------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEE
Confidence            9999999876443332                               778899999998  899999998     99999


Q ss_pred             EECCCcc-----------eEEEeecccc--cEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEE
Q 013717          237 WRASDLR-----------CLESIKAHED--AVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNA  302 (437)
Q Consensus       237 wd~~~~~-----------~~~~~~~~~~--~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~  302 (437)
                      ||+....           .+..+..+..  .+.+++|+|++. +++++.||.|++||++...   ..+..+..|...|.+
T Consensus       147 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~  223 (369)
T 3zwl_B          147 YEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY---EYVDSIDLHEKSISD  223 (369)
T ss_dssp             EEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT---EEEEEEECCSSCEEE
T ss_pred             EEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc---EeEEEEecCCCceeE
Confidence            9997653           2334444555  899999999998 9999999999999987532   467778889999999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCC--------------cEE
Q 013717          303 LALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADR--------------TVR  366 (437)
Q Consensus       303 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg--------------~i~  366 (437)
                      ++|+|++++|++++.||.|++||+++++....+.     +...+.++.++++  ++++++.++              .++
T Consensus       224 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~  298 (369)
T 3zwl_B          224 MQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEAR  298 (369)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----CSSCEEEEEECSSSSEEEEEECCC-------------CEEE
T ss_pred             EEECCCCCEEEEecCCceEEEEECCCCceeeeec-----CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeE
Confidence            9999999999999999999999998876433332     5566777776654  999999888              899


Q ss_pred             EeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          367 IWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       367 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      +||..+++   .+..+.+|...|++++|+|++.     +|++++.||.|++|+++.+..
T Consensus       299 ~~d~~~~~---~~~~~~~~~~~v~~~~~s~~~~-----~l~s~~~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          299 FYHKIFEE---EIGRVQGHFGPLNTVAISPQGT-----SYASGGEDGFIRLHHFEKSYF  349 (369)
T ss_dssp             EEETTTCC---EEEEEECCSSCEEEEEECTTSS-----EEEEEETTSEEEEEEECHHHH
T ss_pred             EEecCCCc---chhheecccCcEEEEEECCCCC-----EEEEEcCCCeEEEEECccccc
Confidence            99999877   7888899999999999999874     899999999999999987643

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.5e-38  Score=291.90  Aligned_cols=281  Identities=20%  Similarity=0.311  Sum_probs=232.8

Q ss_pred             CeEEEEee-CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccc
Q 013717          100 PIGCIAVH-HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHK  176 (437)
Q Consensus       100 ~V~~l~~~-~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~  176 (437)
                      .++.|+|+ +++||+|.+++|+|||..+++......+   .+|...|++|+|++++  |++|+.||+|++||+.+++...
T Consensus       107 y~~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~---~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~  183 (420)
T 4gga_A          107 YLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQM---EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR  183 (420)
T ss_dssp             TCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEEC---CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cceeEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEe---cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence            46789999 8888888745999999999765554444   5788999999999775  9999999999999999886543


Q ss_pred             cccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCc-ceEEEeecccccE
Q 013717          177 LKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDL-RCLESIKAHEDAV  255 (437)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v  255 (437)
                      ..                              .+|...+.++.+++..+++|+.|+.+++||.... ..+..+.+|...+
T Consensus       184 ~~------------------------------~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~  233 (420)
T 4gga_A          184 NM------------------------------TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV  233 (420)
T ss_dssp             EE------------------------------CCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred             EE------------------------------eCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccce
Confidence            33                              3699999999999999999999999999998764 4567788999999


Q ss_pred             EEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCC-EEEE--EeCCCcEEEEECCCCcc
Q 013717          256 NAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGT-VLFS--GACDRSILVWDREDSAN  331 (437)
Q Consensus       256 ~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~--~~~dg~i~i~d~~~~~~  331 (437)
                      ..+.++|++. +++++.|+.+++||..........+.....|...|.+++|+|++. ++++  |+.|++|++||+.+++.
T Consensus       234 ~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~  313 (420)
T 4gga_A          234 CGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC  313 (420)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE
T ss_pred             eeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc
Confidence            9999999999 999999999999999876665566777888999999999999665 5554  45799999999998764


Q ss_pred             ceEEeeeecccccceEEEEeeC--CEEEEEe--CCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEE
Q 013717          332 HMVVTGALRGHGKAILCLINVA--GLLMSGS--ADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVF  407 (437)
Q Consensus       332 ~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~  407 (437)
                      ...    +.. ...+.++.+.+  +.+++++  .|+.|+|||+.+++   ++..+.+|.+.|++++|+|++.     +|+
T Consensus       314 ~~~----~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~---~v~~l~gH~~~V~~l~~spdg~-----~l~  380 (420)
T 4gga_A          314 LSA----VDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA---KVAELKGHTSRVLSLTMSPDGA-----TVA  380 (420)
T ss_dssp             EEE----EEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSS-----CEE
T ss_pred             cee----ecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc---EEEEEcCCCCCEEEEEEcCCCC-----EEE
Confidence            332    333 34566666654  4555544  79999999999876   8899999999999999999985     799


Q ss_pred             EecCCCcEEEEeeccCCCC
Q 013717          408 SGSLDGEIRAWQVSVSCPN  426 (437)
Q Consensus       408 s~~~dg~i~iw~~~~~~~~  426 (437)
                      ||+.||+|+|||+....+.
T Consensus       381 S~s~D~tvriWdv~~~~~~  399 (420)
T 4gga_A          381 SAAADETLRLWRCFELDPA  399 (420)
T ss_dssp             EEETTTEEEEECCSCSSCC
T ss_pred             EEecCCeEEEEECCCCCcc
Confidence            9999999999999876554

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.8e-38  Score=312.48  Aligned_cols=281  Identities=23%  Similarity=0.357  Sum_probs=224.6

Q ss_pred             eeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCce---eeeeccccCCCCcccEEEEEEeCCe--EEEEec
Q 013717           91 NSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTW---TSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQ  160 (437)
Q Consensus        91 ~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~---~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~  160 (437)
                      ....+ +|.+.|++++|+   +++|++|+.| .|++||+.....   .....+   .+|...|.+++|+++.  |++|+.
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~---~~h~~~v~~v~~s~~g~~l~sgs~  450 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL---TGHSHFVEDVVLSSDGQFALSGSW  450 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEE---ECCSSCEEEEEECTTSSEEEEEET
T ss_pred             hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccccee---cCCCCcEEEEEECCCCCEEEEEeC
Confidence            34456 999999999998   5799999999 999999976422   122233   6799999999999765  999999


Q ss_pred             CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEE
Q 013717          161 DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWR  238 (437)
Q Consensus       161 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd  238 (437)
                      ||+|++||+.+++....                              +.+|...|.+++|++  ++|++|+.|++|++||
T Consensus       451 Dg~v~vwd~~~~~~~~~------------------------------~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd  500 (694)
T 3dm0_A          451 DGELRLWDLAAGVSTRR------------------------------FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN  500 (694)
T ss_dssp             TSEEEEEETTTTEEEEE------------------------------EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCcEEEEECCCCcceeE------------------------------EeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence            99999999988754332                              346999999999998  8999999999999999


Q ss_pred             CCCcceEEEe---ecccccEEEEEEecCC--e-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEE
Q 013717          239 ASDLRCLESI---KAHEDAVNAVAVSAGG--T-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVL  312 (437)
Q Consensus       239 ~~~~~~~~~~---~~~~~~v~~~~~~~~~--~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  312 (437)
                      ..........   .+|...|.+++|+|++  . +++|+.|+.|++||++..    +....+.+|...|.+++|+|+|++|
T Consensus       501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~----~~~~~~~~h~~~v~~v~~spdg~~l  576 (694)
T 3dm0_A          501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC----KLRSTLAGHTGYVSTVAVSPDGSLC  576 (694)
T ss_dssp             TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC----cEEEEEcCCCCCEEEEEEeCCCCEE
Confidence            8654333322   3688889999999986  3 999999999999998754    3667788999999999999999999


Q ss_pred             EEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCC------
Q 013717          313 FSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGH------  385 (437)
Q Consensus       313 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h------  385 (437)
                      ++|+.||.|++||+++++..    ..+. +...+.+++++++ .+++++.++.|+|||++++.   .+..+..+      
T Consensus       577 ~sg~~Dg~i~iwd~~~~~~~----~~~~-~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~~~  648 (694)
T 3dm0_A          577 ASGGKDGVVLLWDLAEGKKL----YSLE-ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKS---IVEDLKVDLKAEAE  648 (694)
T ss_dssp             EEEETTSBCEEEETTTTEEE----ECCB-CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTE---EEEEECCCCC----
T ss_pred             EEEeCCCeEEEEECCCCceE----EEec-CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCC---Chhhhccccccccc
Confidence            99999999999999887532    2222 3456888888766 44445556779999999865   44444322      


Q ss_pred             -------------CCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          386 -------------TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       386 -------------~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                                   ...+++++|+|++.     +|++|+.||.|++|++.
T Consensus       649 ~~~~~~~~~~~~~~~~~~~l~~spdg~-----~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          649 KADNSGPAATKRKVIYCTSLNWSADGS-----TLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             ------------CCCCEEEEEECTTSS-----EEEEEETTSEEEEEEC-
T ss_pred             cccccccccCCceeEEeeeEEEcCCCC-----EEEEEcCCCeEEEEecc
Confidence                         12478999999985     89999999999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.2e-38  Score=285.85  Aligned_cols=292  Identities=14%  Similarity=0.179  Sum_probs=234.0

Q ss_pred             ceeeeec-CccCCeEEEEee--C-CEEEEEec---C-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC----e-E
Q 013717           89 CINSVQL-GHKLPIGCIAVH--H-NFLYAASS---H-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG----K-I  155 (437)
Q Consensus        89 ~~~~~~~-~h~~~V~~l~~~--~-~~l~s~~~---d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~-l  155 (437)
                      ......+ +|...|.+++|+  + .++++|+.   | .|++||+.+++......+    +|...|.+++|+++    . |
T Consensus         8 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~l   83 (357)
T 3i2n_A            8 QIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI----EKAKPIKCGTFGATSLQQRYL   83 (357)
T ss_dssp             CEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE----EESSCEEEEECTTCCTTTCCE
T ss_pred             HHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee----cccCcEEEEEEcCCCCCCceE
Confidence            3444455 899999999999  5 45566665   7 999999998765555443    58999999999975    4 9


Q ss_pred             EEEecCCeEEEEeCCCCc-ccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe------CC--CeEE
Q 013717          156 FTAHQDCKIRVWQLTPTK-HHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV------NN--GLIY  226 (437)
Q Consensus       156 ~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~--~~l~  226 (437)
                      ++++.||.|++||+.+++ ...                              .+.+|...|.++.+      ++  ++|+
T Consensus        84 ~~~~~dg~i~iwd~~~~~~~~~------------------------------~~~~~~~~v~~~~~~~~~~~s~~~~~l~  133 (357)
T 3i2n_A           84 ATGDFGGNLHIWNLEAPEMPVY------------------------------SVKGHKEIINAIDGIGGLGIGEGAPEIV  133 (357)
T ss_dssp             EEEETTSCEEEECTTSCSSCSE------------------------------EECCCSSCEEEEEEESGGGCC-CCCEEE
T ss_pred             EEecCCCeEEEEeCCCCCccEE------------------------------EEEecccceEEEeeccccccCCCccEEE
Confidence            999999999999998775 222                              22369999999965      44  7999


Q ss_pred             EEECCCcEEEEECCCcc-eEEEeecccc----cEEEEE----EecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCc
Q 013717          227 SVSWDKSLKIWRASDLR-CLESIKAHED----AVNAVA----VSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKH  296 (437)
Q Consensus       227 ~~~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  296 (437)
                      +++.||.|++||+.+++ .+..+..+.+    .+.+++    |+|++. +++++.||.|++||++...    . .....|
T Consensus       134 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~-~~~~~~  208 (357)
T 3i2n_A          134 TGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA----L-RWETNI  208 (357)
T ss_dssp             EEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE----E-EEEEEC
T ss_pred             EEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc----e-eeecCC
Confidence            99999999999999887 6777765544    899998    678888 9999999999999987643    2 333567


Q ss_pred             cccEEEEEEcc---CCCEEEEEeCCCcEEEEECCCCccceEEe-eeecccccceEEEEeeCC---EEEEEeCCCcEEEee
Q 013717          297 KSAVNALALSD---DGTVLFSGACDRSILVWDREDSANHMVVT-GALRGHGKAILCLINVAG---LLMSGSADRTVRIWQ  369 (437)
Q Consensus       297 ~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd  369 (437)
                      ...|.+++|+|   ++++|++++.||.|++||+++++....+. ....+|...|.++.++++   +|++++.||.|++||
T Consensus       209 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd  288 (357)
T 3i2n_A          209 KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWK  288 (357)
T ss_dssp             SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred             CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEee
Confidence            88999999999   99999999999999999998765443321 234579999999999876   799999999999999


Q ss_pred             CCCCCCe----------------eeeeeecCCCCCeeEEEEEccCCCCceEEEE-EecCCCcEEEEeeccCC
Q 013717          370 RGSDGRF----------------GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVF-SGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       370 ~~~~~~~----------------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~  424 (437)
                      ++.+...                .++..+.+|..+|++++|+|++.     +|+ +++.||.|++|++....
T Consensus       289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-----~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          289 YEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKR-----GLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             EECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSST-----TEEEEEETTSEEEEEEECC--
T ss_pred             cCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCC-----eEEEEecCCCcEEEEECCCcc
Confidence            9865432                46788899999999999999986     355 89999999999998653

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-39  Score=298.08  Aligned_cols=321  Identities=15%  Similarity=0.248  Sum_probs=237.5

Q ss_pred             eeccccccccccCCCceeE----EecCCCcceeeeec--CccCCeEEEEee---CCEEEEEecC-eEEEEeCCC---Cc-
Q 013717           63 QTLPSVPSLQKLSPDETIN----FSSASHLCINSVQL--GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTG---TT-  128 (437)
Q Consensus        63 ~~~~~~~~~~s~s~dg~i~----~~~~~~~~~~~~~~--~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~---~~-  128 (437)
                      .+.|........+.++...    .|+.+  ..++..+  +|.+.|++++|+   +++|++|+.| .|+|||+.+   +. 
T Consensus        24 ~~~p~~~~~~~f~~~~~~~~~~~~w~~~--g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~  101 (437)
T 3gre_A           24 KILPPLRDYKEFGPIQEIVRSPNMGNLR--GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV  101 (437)
T ss_dssp             -CCCCGGGCGGGCCCCCCCCCCCGGGCC--CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC
T ss_pred             CCCCChhchhhcCCcccccccccccccc--ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc
Confidence            3334444444444444322    46643  3444455  899999999998   5799999999 999999876   32 


Q ss_pred             eeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCC---CCcccccccccCccccceeeecCCCCeeEEeec
Q 013717          129 WTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLT---PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRH  203 (437)
Q Consensus       129 ~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (437)
                      .+....+    +|...|.+++|+++.  |++++.||.|++||+.   +++......   ...                 .
T Consensus       102 ~~~~~~~----~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---~~~-----------------i  157 (437)
T 3gre_A          102 YSSSLTY----DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLN---CEC-----------------I  157 (437)
T ss_dssp             CSCSEEE----ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEE---EEE-----------------E
T ss_pred             cceeeec----cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccc---cce-----------------e
Confidence            1112222    489999999999754  9999999999999995   332211111   000                 0


Q ss_pred             cceeeec--CCCcEEEEEe--CC--CeEEEEECCCcEEEEECCCcceEEEeec--ccccEEEEEEecCCe-EEEEeCCCe
Q 013717          204 KKKLWIE--HGDAVTGLAV--NN--GLIYSVSWDKSLKIWRASDLRCLESIKA--HEDAVNAVAVSAGGT-VYTGSADRK  274 (437)
Q Consensus       204 ~~~~~~~--~~~~v~~~~~--~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~-l~~~~~dg~  274 (437)
                      ....+..  +...+.++.+  ++  .++++|+.||.|++||+++++.+..+..  |...|++++|+|++. |++|+.||.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~  237 (437)
T 3gre_A          158 RKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGI  237 (437)
T ss_dssp             EEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSC
T ss_pred             EEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCe
Confidence            0000111  6677888874  34  8999999999999999999999999987  889999999999998 999999999


Q ss_pred             EEEecCCCCcccceeeEEee-CccccEEEEEEc----cCCCEEEEEeCCCcEEEEECCCCccceEEeee-----------
Q 013717          275 IRVWAKPFNEKRHALIATLE-KHKSAVNALALS----DDGTVLFSGACDRSILVWDREDSANHMVVTGA-----------  338 (437)
Q Consensus       275 v~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------  338 (437)
                      |++||++..    ..+..+. .|...|.+++|+    |++.+|++|+.||.|++||+++++....+...           
T Consensus       238 i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  313 (437)
T 3gre_A          238 IDIWDIRFN----VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP  313 (437)
T ss_dssp             EEEEETTTT----EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC
T ss_pred             EEEEEcCCc----cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc
Confidence            999998753    4566665 678899999655    56889999999999999999987654443311           


Q ss_pred             ---------ecc--cccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecC----------------------
Q 013717          339 ---------LRG--HGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEG----------------------  384 (437)
Q Consensus       339 ---------~~~--~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------------  384 (437)
                               +.+  |...|.++++++. +|++|+.||.|++||+.+++   +...+.+                      
T Consensus       314 ~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (437)
T 3gre_A          314 IEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELS---SSKAVISPSRFSDVFIPTQVTANLTMLLR  390 (437)
T ss_dssp             BCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGG---GCEEEECC--CCCEEEEEEEETTEEEEEE
T ss_pred             cccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcc---cceEEecccccCceEEEEEeecceEEEEE
Confidence                     122  6777888888855 89999999999999999876   3333333                      


Q ss_pred             ---------------CCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717          385 ---------------HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       385 ---------------h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~  419 (437)
                                     |.+.|++++|+++.+.   .+|++|+.||.|+||+
T Consensus       391 ~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~---~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          391 KMKRTSTHSVDDSLYHHDIINSISTCEVDET---PLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             ECC-------------CCCEEEEEEEESSSS---EEEEEEETTSCEEEEC
T ss_pred             ecccccccccCcccccccceeeEeeeccCCc---eEEEEEcCCceEEEeC
Confidence                           8999999999998322   5899999999999995

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=9.5e-38  Score=293.13  Aligned_cols=290  Identities=21%  Similarity=0.344  Sum_probs=241.5

Q ss_pred             EecCCCcceeeeec-CccCC-eEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEE
Q 013717           82 FSSASHLCINSVQL-GHKLP-IGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFT  157 (437)
Q Consensus        82 ~~~~~~~~~~~~~~-~h~~~-V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s  157 (437)
                      .|...........+ +|... +.|+.+++++|++|+.| .|++||+.++  +.+..+   .+|.+.|.+++|+++. +++
T Consensus       104 ~w~~~~~~~~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~--~~~~~~---~~h~~~V~~l~~~~~~~l~s  178 (464)
T 3v7d_B          104 NWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINK--KFLLQL---SGHDGGVWALKYAHGGILVS  178 (464)
T ss_dssp             HHHCTTCCCEEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTT--EEEEEE---CCCSSCEEEEEECSTTEEEE
T ss_pred             hhcCCCcCcceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCC--cEEEEE---eCCCcCEEEEEEcCCCEEEE
Confidence            44444444556667 99887 57888889999999999 9999999985  445555   5799999999999765 999


Q ss_pred             EecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEEEECCCc
Q 013717          158 AHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYSVSWDKS  233 (437)
Q Consensus       158 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~  233 (437)
                      |+.||+|++||+++++....+                              .+|...|.++++.+    .++++|+.||.
T Consensus       179 ~s~dg~i~vwd~~~~~~~~~~------------------------------~~h~~~v~~l~~~~~~~~~~l~s~s~d~~  228 (464)
T 3v7d_B          179 GSTDRTVRVWDIKKGCCTHVF------------------------------EGHNSTVRCLDIVEYKNIKYIVTGSRDNT  228 (464)
T ss_dssp             EETTSCEEEEETTTTEEEEEE------------------------------CCCSSCEEEEEEEESSSCEEEEEEETTSC
T ss_pred             EeCCCCEEEEECCCCcEEEEE------------------------------CCCCCccEEEEEecCCCCCEEEEEcCCCc
Confidence            999999999999987643322                              36999999999973    78999999999


Q ss_pred             EEEEECCCcce-----------------------EEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCccccee
Q 013717          234 LKIWRASDLRC-----------------------LESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHAL  289 (437)
Q Consensus       234 i~iwd~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~  289 (437)
                      |++||+.+++.                       +..+.+|...|.++  ++++. +++|+.||.|++||++..    +.
T Consensus       229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~----~~  302 (464)
T 3v7d_B          229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM----KC  302 (464)
T ss_dssp             EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT----EE
T ss_pred             EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC----cE
Confidence            99999987653                       44566788888887  45666 999999999999998754    46


Q ss_pred             eEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEee
Q 013717          290 IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQ  369 (437)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd  369 (437)
                      +..+.+|...|.+++|+|++++|++|+.||.|++||+++++    ....+.+|...|.++.+++.+|++++.||.|++||
T Consensus       303 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd  378 (464)
T 3v7d_B          303 LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE----LMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWD  378 (464)
T ss_dssp             EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEE
T ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----EEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEE
Confidence            77888899999999999999999999999999999998875    45556789999999999999999999999999999


Q ss_pred             CCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCC
Q 013717          370 RGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPN  426 (437)
Q Consensus       370 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  426 (437)
                      +.+..   ..... .|...+..++|++++.     +|++++ ||.|++||+++++..
T Consensus       379 ~~~~~---~~~~~-~~~~~~~~~~~~~~~~-----~l~~~~-dg~i~iwd~~~g~~~  425 (464)
T 3v7d_B          379 ANDYS---RKFSY-HHTNLSAITTFYVSDN-----ILVSGS-ENQFNIYNLRSGKLV  425 (464)
T ss_dssp             TTTCC---EEEEE-ECTTCCCEEEEEECSS-----EEEEEE-TTEEEEEETTTCCEE
T ss_pred             CCCCc---eeeee-cCCCCccEEEEEeCCC-----EEEEec-CCeEEEEECCCCcEE
Confidence            99865   33333 3667788899999874     788887 899999999988754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.6e-39  Score=295.22  Aligned_cols=286  Identities=19%  Similarity=0.251  Sum_probs=232.9

Q ss_pred             ccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCcee--ee
Q 013717           59 NLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWT--SI  132 (437)
Q Consensus        59 ~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~--~~  132 (437)
                      ..++.+.|....+++++.||+|++|+..... ....+ +|...|.+++|+  +++|++|+.| .|++||+.+....  ..
T Consensus        69 V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~  147 (380)
T 3iz6_a           69 VYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-KTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNM  147 (380)
T ss_dssp             EEEEEECTTSSCEEEEETTSEEEEEETTTTE-EEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSS
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-cceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCc
Confidence            3678999999999999999999999987654 44555 999999999999  9999999999 9999999763211  11


Q ss_pred             eccccCCCCcccEEEEEEeCC---eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717          133 NTFNDNDSSSGSVKSVTFCDG---KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI  209 (437)
Q Consensus       133 ~~~~~~~~h~~~v~~l~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (437)
                      .....+.+|.+.|.++.|.++   .|++|+.|++|++||+.+++....+...                         ...
T Consensus       148 ~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~-------------------------~~~  202 (380)
T 3iz6_a          148 PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE-------------------------FPS  202 (380)
T ss_dssp             TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC-------------------------SSS
T ss_pred             cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc-------------------------cCC
Confidence            112233689999999999864   3999999999999999988654332110                         013


Q ss_pred             cCCCcEEEEEeCC---CeEEEEECCCcEEEEECC-CcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCc
Q 013717          210 EHGDAVTGLAVNN---GLIYSVSWDKSLKIWRAS-DLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNE  284 (437)
Q Consensus       210 ~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~  284 (437)
                      +|...|.++++++   +++++|+.||.|++||++ ..+.+..+.+|...|++++|+|++. |++|+.||.|++||++.+.
T Consensus       203 ~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~  282 (380)
T 3iz6_a          203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH  282 (380)
T ss_dssp             SCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE
T ss_pred             CCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc
Confidence            5899999999965   899999999999999998 4577888889999999999999998 9999999999999987653


Q ss_pred             ccceeeEEeeCc-------cccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--E
Q 013717          285 KRHALIATLEKH-------KSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--L  355 (437)
Q Consensus       285 ~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~  355 (437)
                          .+..+..+       ...|.+++|+|+|++|++|+.||.|++||+..++....+.....+|...|.+++++++  +
T Consensus       283 ----~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~  358 (380)
T 3iz6_a          283 ----QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSA  358 (380)
T ss_dssp             ----EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSE
T ss_pred             ----EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCE
Confidence                33333332       2348999999999999999999999999998876544443334689999999888755  9


Q ss_pred             EEEEeCCCcEEEeeCCCCC
Q 013717          356 LMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       356 l~~~~~dg~i~iwd~~~~~  374 (437)
                      |++|+.||+|+||++...+
T Consensus       359 l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          359 LCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             EEEECTTSCEEEEECCSSS
T ss_pred             EEEeeCCCCEEEEecCCCc
Confidence            9999999999999998643

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.3e-38  Score=292.12  Aligned_cols=313  Identities=18%  Similarity=0.236  Sum_probs=242.6

Q ss_pred             CCCceeEEecCCCcceeeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeeeecc--------ccCCCC
Q 013717           75 SPDETINFSSASHLCINSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSINTF--------NDNDSS  141 (437)
Q Consensus        75 s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~--------~~~~~h  141 (437)
                      ..++.+++|+.+.... ...+ +|.+.|.+++|+   +++|++|+.| .|++||+.++........        ....+|
T Consensus        20 ~~~~~~~v~~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (408)
T 4a11_B           20 RAESTRRVLGLELNKD-RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH   98 (408)
T ss_dssp             HHHHHHHHHTEEECTT-EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCC
T ss_pred             eccCcceeeccccCcc-eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccC
Confidence            4456677888765443 3444 999999999997   6999999999 999999998533222211        111359


Q ss_pred             cccEEEEEEeC-Ce--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717          142 SGSVKSVTFCD-GK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL  218 (437)
Q Consensus       142 ~~~v~~l~~~~-~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  218 (437)
                      ...|.+++|++ +.  |++++.||.|++||+.+++.....                               .+...+.++
T Consensus        99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------------------------------~~~~~~~~~  147 (408)
T 4a11_B           99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF-------------------------------NFEETVYSH  147 (408)
T ss_dssp             SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE-------------------------------ECSSCEEEE
T ss_pred             CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec-------------------------------cCCCceeee
Confidence            99999999997 43  999999999999999987644333                               267788999


Q ss_pred             EeCC-----CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCccccee--
Q 013717          219 AVNN-----GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHAL--  289 (437)
Q Consensus       219 ~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~--  289 (437)
                      .+.+     .++++++.||.|++||+++++.+..+..|...|.+++|+|++.  +++|+.||.|++||++........  
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~  227 (408)
T 4a11_B          148 HMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD  227 (408)
T ss_dssp             EECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECC
T ss_pred             EeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccc
Confidence            9877     3899999999999999999999999999999999999999986  789999999999999765421111  


Q ss_pred             ----------eEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccc--ccceEEEEe-eCCEE
Q 013717          290 ----------IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH--GKAILCLIN-VAGLL  356 (437)
Q Consensus       290 ----------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~i~~~~~-~~~~l  356 (437)
                                ......|...|.+++|+|++++|++++.||.|++||+++++............  ......+.. ....+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (408)
T 4a11_B          228 QHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEF  307 (408)
T ss_dssp             TTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCE
T ss_pred             ccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceE
Confidence                      11125688999999999999999999999999999999876543322211111  111122222 23477


Q ss_pred             EEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCC
Q 013717          357 MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNS  427 (437)
Q Consensus       357 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  427 (437)
                      ++++.|+.|++||+.+++   ++..+.+|...|++++|+|++.     +|++++.||.|++|+++.+++..
T Consensus       308 ~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~v~~~~~s~~~~-----~l~s~~~dg~i~iw~~~~~~~~~  370 (408)
T 4a11_B          308 VFVPYGSTIAVYTVYSGE---QITMLKGHYKTVDCCVFQSNFQ-----ELYSGSRDCNILAWVPSLYEPVP  370 (408)
T ss_dssp             EEEEETTEEEEEETTTCC---EEEEECCCSSCEEEEEEETTTT-----EEEEEETTSCEEEEEECC-----
T ss_pred             EEEecCCEEEEEECcCCc---ceeeeccCCCeEEEEEEcCCCC-----EEEEECCCCeEEEEeCCCCCccC
Confidence            778889999999999877   8889999999999999999884     89999999999999999887643

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=9.6e-39  Score=288.57  Aligned_cols=276  Identities=15%  Similarity=0.104  Sum_probs=217.8

Q ss_pred             ccceeeccccccccccCC------CceeEEecCCCcc---eeeeec-CccCCeEEEEee-CCEEEEEecC-eEEEEeCCC
Q 013717           59 NLSLQTLPSVPSLQKLSP------DETINFSSASHLC---INSVQL-GHKLPIGCIAVH-HNFLYAASSH-EINVYDRTG  126 (437)
Q Consensus        59 ~~~~~~~~~~~~~~s~s~------dg~i~~~~~~~~~---~~~~~~-~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~  126 (437)
                      ..++.|.|+...+++.+.      |+.+.+|+.....   ...... +|...|.+++|+ ...+++++.| .|+|||+.+
T Consensus        45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~  124 (357)
T 4g56_B           45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILE  124 (357)
T ss_dssp             EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC----
T ss_pred             EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccc
Confidence            357899999999999987      7889999874432   222223 899999999999 5667778888 999999988


Q ss_pred             CceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeecc
Q 013717          127 TTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHK  204 (437)
Q Consensus       127 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (437)
                      ++......+. ..+|...|.+++|+++.  |++++.|++|++||+++++....+                          
T Consensus       125 ~~~~~~~~~~-~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~--------------------------  177 (357)
T 4g56_B          125 KESLLVNKFA-KYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY--------------------------  177 (357)
T ss_dssp             ----CCCCEE-ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE--------------------------
T ss_pred             cceeEEEeec-cCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE--------------------------
Confidence            6433332221 24799999999999765  999999999999999987644333                          


Q ss_pred             ceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEee--cccccEEEEEEecCCe--EEEEeCCCeEEE
Q 013717          205 KKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIK--AHEDAVNAVAVSAGGT--VYTGSADRKIRV  277 (437)
Q Consensus       205 ~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~--l~~~~~dg~v~i  277 (437)
                          .+|...|++++|++   .++++++.||.|++||+++++....+.  .+...+.+++|+|++.  |++|+.|+.|++
T Consensus       178 ----~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~  253 (357)
T 4g56_B          178 ----NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL  253 (357)
T ss_dssp             ----CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEE
T ss_pred             ----cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeE
Confidence                36999999999987   579999999999999999988776654  4677899999999764  889999999999


Q ss_pred             ecCCCCcccceeeEEeeCccccEEEEEEccCC-CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC---
Q 013717          278 WAKPFNEKRHALIATLEKHKSAVNALALSDDG-TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA---  353 (437)
Q Consensus       278 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~---  353 (437)
                      ||++...    .+..+.+|...|++++|+|++ ++|++|+.|++|+|||+++++.    .. ..+|...|.+++|++   
T Consensus       254 wd~~~~~----~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~----~~-~~~H~~~V~~vafsP~d~  324 (357)
T 4g56_B          254 VNIKNPD----SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV----FR-DLSHRDFVTGVAWSPLDH  324 (357)
T ss_dssp             EESSCGG----GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE----EE-ECCCSSCEEEEEECSSST
T ss_pred             EECCCCc----EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE----eE-ECCCCCCEEEEEEeCCCC
Confidence            9987543    567788899999999999987 5799999999999999987642    22 347999999999874   


Q ss_pred             CEEEEEeCCCcEEEeeCCCCC
Q 013717          354 GLLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       354 ~~l~~~~~dg~i~iwd~~~~~  374 (437)
                      .+|++++.||+|++|++....
T Consensus       325 ~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          325 SKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             TEEEEEETTSCEEEEECC---
T ss_pred             CEEEEEcCCCeEEEEECCCCC
Confidence            499999999999999998654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.7e-38  Score=282.85  Aligned_cols=273  Identities=20%  Similarity=0.254  Sum_probs=228.1

Q ss_pred             cccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceee-e
Q 013717           58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTS-I  132 (437)
Q Consensus        58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~-~  132 (437)
                      ...++.+.|....+++++.||+|++|+....... ..+ .|...|.+++|+  +.+|++|+.| .+++|++....... .
T Consensus        66 ~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~-~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~  144 (354)
T 2pbi_B           66 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE-HAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMA  144 (354)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-EEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSG
T ss_pred             eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcc-eEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccc
Confidence            3468899999999999999999999998765443 445 899999999999  9999999999 99999986531110 0


Q ss_pred             eccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeec
Q 013717          133 NTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIE  210 (437)
Q Consensus       133 ~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (437)
                      .......+|...|.+++|+++.  |++++.|++|++||+++++....                              +.+
T Consensus       145 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~------------------------------~~~  194 (354)
T 2pbi_B          145 AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQS------------------------------FHG  194 (354)
T ss_dssp             GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE------------------------------EEC
T ss_pred             ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEE------------------------------EcC
Confidence            1111124699999999999664  99999999999999998764332                              246


Q ss_pred             CCCcEEEEEeCC----CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcc
Q 013717          211 HGDAVTGLAVNN----GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEK  285 (437)
Q Consensus       211 ~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~  285 (437)
                      |...|.++++.+    ++|++|+.||.|++||+++++++..+..|...|++++|+|++. |++|+.|+.|++||++... 
T Consensus       195 h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~-  273 (354)
T 2pbi_B          195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR-  273 (354)
T ss_dssp             CSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-
T ss_pred             CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-
Confidence            999999999976    6899999999999999999999999999999999999999998 9999999999999987543 


Q ss_pred             cceeeEEeeC--ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeC
Q 013717          286 RHALIATLEK--HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSA  361 (437)
Q Consensus       286 ~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~  361 (437)
                         .+..+..  +...+.+++|+|+|++|++|+.|+.|++||+.+++    ....+.+|...|.+++++++  +|++|+.
T Consensus       274 ---~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~----~~~~l~~h~~~v~~l~~spdg~~l~sgs~  346 (354)
T 2pbi_B          274 ---EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS----RVSILFGHENRVSTLRVSPDGTAFCSGSW  346 (354)
T ss_dssp             ---EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS----EEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             ---EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc----eEEEEECCCCcEEEEEECCCCCEEEEEcC
Confidence               2333332  33578999999999999999999999999998776    33456789999999998765  9999999


Q ss_pred             CCcEEEee
Q 013717          362 DRTVRIWQ  369 (437)
Q Consensus       362 dg~i~iwd  369 (437)
                      ||+|+||+
T Consensus       347 D~~v~vW~  354 (354)
T 2pbi_B          347 DHTLRVWA  354 (354)
T ss_dssp             TSEEEEEC
T ss_pred             CCCEEecC
Confidence            99999996

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=7.6e-37  Score=287.01  Aligned_cols=326  Identities=21%  Similarity=0.271  Sum_probs=256.3

Q ss_pred             eccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeeccccCCC
Q 013717           64 TLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDS  140 (437)
Q Consensus        64 ~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~  140 (437)
                      +.++...+++++.||.|++|+.... .+...+ +|.+.|.+++|+ +.+|++|+.| .|++||+.++  +....+   .+
T Consensus       128 ~~~~~~~l~sgs~dg~i~vwd~~~~-~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~---~~  201 (464)
T 3v7d_B          128 LQFEDNYVITGADDKMIRVYDSINK-KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG--CCTHVF---EG  201 (464)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTT--EEEEEE---CC
T ss_pred             EEECCCEEEEEcCCCcEEEEECCCC-cEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCC--cEEEEE---CC
Confidence            3445678999999999999998764 455566 999999999999 6699999999 9999999985  344444   57


Q ss_pred             CcccEEEEEEe--CC-e-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717          141 SSGSVKSVTFC--DG-K-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT  216 (437)
Q Consensus       141 h~~~v~~l~~~--~~-~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  216 (437)
                      |...|.+++|.  ++ . +++++.||+|++||+.+.............   ......+...    ......+.+|...|.
T Consensus       202 h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~~~~~~~~~~~v~  274 (464)
T 3v7d_B          202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY---PLVFHTPEEN----PYFVGVLRGHMASVR  274 (464)
T ss_dssp             CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCS---SEEESCGGGC----TTEEEEECCCSSCEE
T ss_pred             CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCc---ceEeeccCCC----eEEEEEccCccceEE
Confidence            99999999998  33 3 999999999999999877543322111100   0000000000    001234567999999


Q ss_pred             EEEeCCCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC
Q 013717          217 GLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK  295 (437)
Q Consensus       217 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  295 (437)
                      ++..+++++++|+.||.|++||+.+++.+..+.+|...|.+++|+|++. +++|+.||.|++||++..    +.+..+.+
T Consensus       275 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~  350 (464)
T 3v7d_B          275 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG----ELMYTLQG  350 (464)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT----EEEEEECC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----cEEEEEeC
Confidence            9988889999999999999999999999999999999999999999998 999999999999998754    47788889


Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCC
Q 013717          296 HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGR  375 (437)
Q Consensus       296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  375 (437)
                      |...|.+++|+  +++|++++.||.|++||+++.......   ...+...+.++..++.++++|+ ||.|++||+++++ 
T Consensus       351 h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~-  423 (464)
T 3v7d_B          351 HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY---HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK-  423 (464)
T ss_dssp             CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE---ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC-
T ss_pred             CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee---cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc-
Confidence            99999999997  579999999999999999876543322   2334555677777888999988 8999999999877 


Q ss_pred             eeeeee-ecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          376 FGCLAV-LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       376 ~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                        ++.. +.+|...|.+++|++.      .++++++.||.+.+|-++
T Consensus       424 --~~~~~~~~~~~~v~~v~~~~~------~l~~~~~~~g~~~i~~ld  462 (464)
T 3v7d_B          424 --LVHANILKDADQIWSVNFKGK------TLVAAVEKDGQSFLEILD  462 (464)
T ss_dssp             --EEESCTTTTCSEEEEEEEETT------EEEEEEEETTEEEEEEEE
T ss_pred             --EEehhhccCCCcEEEEEecCC------EEEEEEEeCCeEEEEEee
Confidence              5554 6788999999999743      377788888877776554

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.1e-38  Score=286.87  Aligned_cols=289  Identities=15%  Similarity=0.273  Sum_probs=229.4

Q ss_pred             CccCCeEEEEeeC------CEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC------eEEEEecCC
Q 013717           96 GHKLPIGCIAVHH------NFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG------KIFTAHQDC  162 (437)
Q Consensus        96 ~h~~~V~~l~~~~------~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~------~l~s~~~dg  162 (437)
                      +|.++|.+++|+.      ..+++++.+ .|++||+.++.............|...|.+++|+++      .|++++.||
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg   95 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG   95 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC
T ss_pred             CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC
Confidence            8999999999982      345555545 999999997533222211111347789999999966      399999999


Q ss_pred             eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEEC
Q 013717          163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRA  239 (437)
Q Consensus       163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~  239 (437)
                      .|++||+.+++....+                              .+|...|.+++|+|   .+|++++.||.|++||+
T Consensus        96 ~i~v~d~~~~~~~~~~------------------------------~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~  145 (366)
T 3k26_A           96 IIRIINPITMQCIKHY------------------------------VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI  145 (366)
T ss_dssp             EEEEECTTTCCEEEEE------------------------------ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             EEEEEEchhceEeeee------------------------------cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence            9999999877543322                              36999999999986   79999999999999999


Q ss_pred             CCcceEEEe---ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc------------------------eeeE
Q 013717          240 SDLRCLESI---KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH------------------------ALIA  291 (437)
Q Consensus       240 ~~~~~~~~~---~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~------------------------~~~~  291 (437)
                      ++++.+..+   ..|...|.+++|+|++. |++++.||.|++||++......                        ....
T Consensus       146 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (366)
T 3k26_A          146 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS  225 (366)
T ss_dssp             TTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEE
T ss_pred             ecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccc
Confidence            999998888   67999999999999998 9999999999999987543211                        1122


Q ss_pred             EeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCcc----------ceEEeeeecccccceEEEEee----CCEEE
Q 013717          292 TLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSAN----------HMVVTGALRGHGKAILCLINV----AGLLM  357 (437)
Q Consensus       292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~~~~~~i~~~~~~----~~~l~  357 (437)
                      ....|...|.+++|+  +++|++++.||.|++||+++...          .......+.+|...+.++.++    +.+|+
T Consensus       226 ~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~  303 (366)
T 3k26_A          226 TRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA  303 (366)
T ss_dssp             ECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE
T ss_pred             cccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEE
Confidence            334488999999998  77999999999999999987543          123455566777777666554    66999


Q ss_pred             EEeCCCcEEEeeCCCCCCee-eeeeecCC--CCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          358 SGSADRTVRIWQRGSDGRFG-CLAVLEGH--TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       358 ~~~~dg~i~iwd~~~~~~~~-~~~~~~~h--~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      +|+.||.|++||+.+++... ....+.+|  ...|++++|+|++.     +|++++.||.|++||+.
T Consensus       304 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-----~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          304 LGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS-----ILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS-----EEEEEETTSEEEEEEC-
T ss_pred             EEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC-----eEEEEeCCCEEEEEEec
Confidence            99999999999999876322 45577777  79999999999874     89999999999999986

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-37  Score=311.46  Aligned_cols=331  Identities=10%  Similarity=0.082  Sum_probs=252.4

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeecccc
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTFND  137 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~  137 (437)
                      .++.|.|....+++++.||+|++|+... ..+...+.|...|.+++|+ +++|++++.| .|++||+.+++  .+..+  
T Consensus        21 ~~lafspdg~~lAsgs~Dg~I~lw~~~~-~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~--~~~~~--   95 (902)
T 2oaj_A           21 IAAAFDFTQNLLAIATVTGEVHIYGQQQ-VEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQK--VLTTV--   95 (902)
T ss_dssp             EEEEEETTTTEEEEEETTSEEEEECSTT-CEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCS--EEEEE--
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEeCCC-cEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCc--EEEEE--
Confidence            5789999999999999999999999865 3444445889999999999 8899999999 99999999853  34444  


Q ss_pred             CCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccc-eeeecCCCc
Q 013717          138 NDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKK-KLWIEHGDA  214 (437)
Q Consensus       138 ~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  214 (437)
                        .|...|++++|+++.  |++|+.||+|++||+++++.... . .+..                  ... ..+.+|...
T Consensus        96 --~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~-~-i~~~------------------~~~~~~~~~h~~~  153 (902)
T 2oaj_A           96 --FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSF-K-LDNL------------------QKSSFFPAARLSP  153 (902)
T ss_dssp             --ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEE-E-ECCH------------------HHHHTCSSSCCCC
T ss_pred             --cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccc-e-eccc------------------cccccccccCCCC
Confidence              266899999999765  99999999999999987753210 0 0000                  000 112468999


Q ss_pred             EEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecc------------------cccEEEEEEecCCe-EEEEeCC
Q 013717          215 VTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAH------------------EDAVNAVAVSAGGT-VYTGSAD  272 (437)
Q Consensus       215 v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~-l~~~~~d  272 (437)
                      |.+++|+|   ..+++|+.||.| +||+++++.+..+..|                  ...|++++|+|+|. |++|+.|
T Consensus       154 V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~D  232 (902)
T 2oaj_A          154 IVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHED  232 (902)
T ss_dssp             CCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETT
T ss_pred             eEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECC
Confidence            99999998   589999999999 9999999988888655                  46799999999998 9999999


Q ss_pred             CeEEEecCCCCccc------------------------c-----------------ee--------------eEEee---
Q 013717          273 RKIRVWAKPFNEKR------------------------H-----------------AL--------------IATLE---  294 (437)
Q Consensus       273 g~v~iwd~~~~~~~------------------------~-----------------~~--------------~~~~~---  294 (437)
                      |.|++||++.+...                        .                 ..              +..+.   
T Consensus       233 g~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~  312 (902)
T 2oaj_A          233 NSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGY  312 (902)
T ss_dssp             CCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEE
T ss_pred             CeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCC
Confidence            99999998542210                        0                 00              00000   


Q ss_pred             ---------------------------Cc---------------------------------------------------
Q 013717          295 ---------------------------KH---------------------------------------------------  296 (437)
Q Consensus       295 ---------------------------~~---------------------------------------------------  296 (437)
                                                 .+                                                   
T Consensus       313 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~  392 (902)
T 2oaj_A          313 TPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASL  392 (902)
T ss_dssp             CCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGG
T ss_pred             CCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccccc
Confidence                                       00                                                   


Q ss_pred             --------cccEEEE----------------------------------EEccCCCEEEEEeCCCcEEEEECCCCccc--
Q 013717          297 --------KSAVNAL----------------------------------ALSDDGTVLFSGACDRSILVWDREDSANH--  332 (437)
Q Consensus       297 --------~~~i~~~----------------------------------~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--  332 (437)
                              ...|+++                                  +|+|++++|++|+.|++|++||+.++...  
T Consensus       393 ~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~  472 (902)
T 2oaj_A          393 FPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN  472 (902)
T ss_dssp             SCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT
T ss_pred             CCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC
Confidence                    0112222                                  23577888999999999999998876421  


Q ss_pred             eEEeeeec-----ccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCC------------------------------
Q 013717          333 MVVTGALR-----GHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGR------------------------------  375 (437)
Q Consensus       333 ~~~~~~~~-----~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~------------------------------  375 (437)
                      ..+...+.     +|...|.+++|+++  +||+|+.||+|+|||+.+++.                              
T Consensus       473 ~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (902)
T 2oaj_A          473 ASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVD  552 (902)
T ss_dssp             BCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEE
T ss_pred             ceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccccc
Confidence            11111122     78889999998865  999999999999999976531                              


Q ss_pred             ------------eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          376 ------------FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       376 ------------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                                  +.++..+.+|.+.|++|+|+|++      +|++|+.||+|++||++.+.
T Consensus       553 ~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG------~lAsgs~D~tv~lwd~~~~~  607 (902)
T 2oaj_A          553 VRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG------FVGIAYAAGSLMLIDRRGPA  607 (902)
T ss_dssp             CGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS------EEEEEETTSEEEEEETTTTE
T ss_pred             ccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc------EEEEEeCCCcEEEEECCCCe
Confidence                        23578889999999999999998      79999999999999987653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-39  Score=303.72  Aligned_cols=318  Identities=9%  Similarity=0.051  Sum_probs=219.1

Q ss_pred             cccccccccCCCceeEEecCCCccee---eeec-CccCCeEEEEeeC--------CEEEEEecC-eEEEEeCCCCcee--
Q 013717           66 PSVPSLQKLSPDETINFSSASHLCIN---SVQL-GHKLPIGCIAVHH--------NFLYAASSH-EINVYDRTGTTWT--  130 (437)
Q Consensus        66 ~~~~~~~s~s~dg~i~~~~~~~~~~~---~~~~-~h~~~V~~l~~~~--------~~l~s~~~d-~v~vwd~~~~~~~--  130 (437)
                      |....+++.+.|++|++|+.+.....   ...+ +|.+.|.+++|+.        ++||+++.| +|+|||+..+...  
T Consensus       171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~  250 (524)
T 2j04_B          171 EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH  250 (524)
T ss_dssp             -----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS
T ss_pred             hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc
Confidence            44456788899999999998654321   2445 7889999999982        599999999 9999999875321  


Q ss_pred             ----eeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccc
Q 013717          131 ----SINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKK  205 (437)
Q Consensus       131 ----~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (437)
                          .......+.+|...|.+++|+++. |++|+.||+|++||++++....                             
T Consensus       251 ~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~-----------------------------  301 (524)
T 2j04_B          251 VFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPS-----------------------------  301 (524)
T ss_dssp             EEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCS-----------------------------
T ss_pred             cceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCce-----------------------------
Confidence                001111236799999999998654 9999999999999998653211                             


Q ss_pred             eeeecCCCcEEEE--EeCC---CeEEEEECCCcEEEEECCCcceEEEeecccc--cEEEEEEecCCe-EEEEeCCCeEEE
Q 013717          206 KLWIEHGDAVTGL--AVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHED--AVNAVAVSAGGT-VYTGSADRKIRV  277 (437)
Q Consensus       206 ~~~~~~~~~v~~~--~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~-l~~~~~dg~v~i  277 (437)
                      ..+.+|...|.++  .+++   .+|++|+.|++|+|||+++++++..+.+|..  .|.+++|+|++. +++++.|+.|++
T Consensus       302 ~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~l  381 (524)
T 2j04_B          302 FYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRA  381 (524)
T ss_dssp             EEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEE
T ss_pred             EEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEE
Confidence            1234699999999  4565   4789999999999999999887777766653  588999999987 999999999999


Q ss_pred             ecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeee-cccccceEEEEeeCC-E
Q 013717          278 WAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGAL-RGHGKAILCLINVAG-L  355 (437)
Q Consensus       278 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~-~  355 (437)
                      ||++...    .+..+.+|.+.|++++|+|+|++|++|+.||+|++||+.... ........ ..+...+..++++++ -
T Consensus       382 wd~~~~~----~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~  456 (524)
T 2j04_B          382 VPSRAAF----AVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRL-LHGIKNSSATQKSLRLWKWDYSIKDD  456 (524)
T ss_dssp             EETTCTT----CCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSST-TTCC------CCCCEEEECBCCSSSC
T ss_pred             EECcccc----cceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhh-ccccccCccceeeeEEEEeccCCCCC
Confidence            9987643    445677899999999999999999999999999999986431 11000000 001224556666654 1


Q ss_pred             EEEEeCCCcEEEeeCC-CCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          356 LMSGSADRTVRIWQRG-SDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       356 l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      ++....  .+++|+.. ++   .++..+.+|...|.+++|+|++.  .+.++++|+.||.||||++....
T Consensus       457 ~~~~~~--~~~~~~~~~~g---~~~~~l~gh~~~V~~Vafsp~~~--~~~~lAsg~~~g~vrlw~l~~~~  519 (524)
T 2j04_B          457 KYRIDS--SYEVYPLTVND---VSKAKIDAHGINITCTKWNETSA--GGKCYAFSNSAGLLTLEYLSLEH  519 (524)
T ss_dssp             EEEECC--CCCCCC----------------CCCSCCCEEECCSTT--TTTEEEEECTTSEEEEEECSCC-
T ss_pred             eEEccC--CceecccccCC---cceeeecCCCceEEEEECCCCCC--ccHHHHhhccCceEEEEEccccc
Confidence            222222  23344332 22   36788999999999999999963  11389999999999999998653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=9.5e-38  Score=277.85  Aligned_cols=271  Identities=21%  Similarity=0.265  Sum_probs=221.9

Q ss_pred             cceeecccc-ccccccCCCceeEEecCCCc----ceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCcee
Q 013717           60 LSLQTLPSV-PSLQKLSPDETINFSSASHL----CINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWT  130 (437)
Q Consensus        60 ~~~~~~~~~-~~~~s~s~dg~i~~~~~~~~----~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~  130 (437)
                      .++.+.|.. ..+++++.|++|++|+....    ..++..+ +|...|.+++|+  +++|++|+.| +|++||+.++  +
T Consensus        21 ~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~--~   98 (319)
T 3frx_A           21 TSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG--E   98 (319)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--E
T ss_pred             EEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC--C
Confidence            467788855 68999999999999998532    3456677 999999999999  8999999999 9999999985  3


Q ss_pred             eeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceee
Q 013717          131 SINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLW  208 (437)
Q Consensus       131 ~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (437)
                      ....+   .+|...|.+++|+++.  |++++.|++|++||++....                               ..+
T Consensus        99 ~~~~~---~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~-------------------------------~~~  144 (319)
T 3frx_A           99 TYQRF---VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL-------------------------------ATL  144 (319)
T ss_dssp             EEEEE---ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEE-------------------------------EEE
T ss_pred             eeEEE---ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE-------------------------------EEE
Confidence            44444   5799999999999765  99999999999999874321                               122


Q ss_pred             ecCCCcEEEEEeCC--------CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEec
Q 013717          209 IEHGDAVTGLAVNN--------GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWA  279 (437)
Q Consensus       209 ~~~~~~v~~~~~~~--------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd  279 (437)
                      .+|...|.++.+.|        ..+++++.|+.|++||+++++....+.+|...|.+++|+|++. |++|+.||.|++||
T Consensus       145 ~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd  224 (319)
T 3frx_A          145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN  224 (319)
T ss_dssp             CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            36899999999987        2799999999999999999999999999999999999999998 99999999999999


Q ss_pred             CCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeee----cccccceEEEEeeCC-
Q 013717          280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGAL----RGHGKAILCLINVAG-  354 (437)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~-  354 (437)
                      +....    .+..+.. ...|.+++|+|++.+|++++.+ .+++|++........+...+    ..|...+.+++|+++ 
T Consensus       225 ~~~~~----~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  298 (319)
T 3frx_A          225 LAAKK----AMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG  298 (319)
T ss_dssp             TTTTE----EEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTS
T ss_pred             CCCCc----EEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCC
Confidence            87543    4555553 5689999999999999988765 49999997654332222211    234566778887755 


Q ss_pred             -EEEEEeCCCcEEEeeCCC
Q 013717          355 -LLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       355 -~l~~~~~dg~i~iwd~~~  372 (437)
                       +|++|+.||.|+|||+.+
T Consensus       299 ~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          299 QTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             SEEEEEETTSCEEEEEEEE
T ss_pred             CEEEEeecCceEEEEEEee
Confidence             999999999999999875

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.7e-39  Score=299.79  Aligned_cols=288  Identities=14%  Similarity=0.156  Sum_probs=216.1

Q ss_pred             CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC-C--eEEEEecCCeEEEEe
Q 013717           96 GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD-G--KIFTAHQDCKIRVWQ  168 (437)
Q Consensus        96 ~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~--~l~s~~~dg~i~iwd  168 (437)
                      +|...|+||+|+   +++||+|+.| .|+|||+.++.......+   .+|.+.|++|+|+| +  .|++|+.||+|++||
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~---~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG---IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECC---CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc---cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence            899999999998   6799999999 999999988654444444   68999999999985 2  399999999999999


Q ss_pred             CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEE
Q 013717          169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLE  246 (437)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~  246 (437)
                      ++++........                            ..+...+.+++|++  .+|++|+.||.|++||++. +.+.
T Consensus       194 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~  244 (435)
T 4e54_B          194 FKGNILRVFASS----------------------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELW  244 (435)
T ss_dssp             TTSCEEEEEECC----------------------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCC
T ss_pred             ccCCceeEEecc----------------------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeE
Confidence            986532211110                            12445677888887  8999999999999999864 5677


Q ss_pred             EeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 013717          247 SIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVW  324 (437)
Q Consensus       247 ~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  324 (437)
                      .+.+|...|++++|+|++.  +++|+.|+.|++||++....... +....+|...|++++|+|+|++|++++.||.|++|
T Consensus       245 ~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~-~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iw  323 (435)
T 4e54_B          245 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS-FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY  323 (435)
T ss_dssp             CSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC-CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEE
T ss_pred             EEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccce-EEEeeeccccccceeECCCCCeeEEEcCCCEEEEE
Confidence            7889999999999999886  78999999999999976543322 23345689999999999999999999999999999


Q ss_pred             ECCCCccceEEeeeeccccc--ceEEEEe--eCCEEEEEe------------CCCcEEEeeCCCCCCeeeeeee-cCCCC
Q 013717          325 DREDSANHMVVTGALRGHGK--AILCLIN--VAGLLMSGS------------ADRTVRIWQRGSDGRFGCLAVL-EGHTK  387 (437)
Q Consensus       325 d~~~~~~~~~~~~~~~~~~~--~i~~~~~--~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~-~~h~~  387 (437)
                      |++++.....+......+..  .+....+  .+.+++++.            .++.|++||..+++   .+..+ .+|..
T Consensus       324 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~---~~~~l~~~~~~  400 (435)
T 4e54_B          324 SASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK---MMCQLYDPESS  400 (435)
T ss_dssp             ESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC---EEEEECCSSCC
T ss_pred             ECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc---EEEEEeCCCCC
Confidence            99987655444322111111  1111122  223444432            34679999999877   55554 56888


Q ss_pred             CeeEE-EEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          388 PVKSL-TAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       388 ~v~~l-~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      .|.++ +|+|++.     +|++|+ |+.|+||+++.+++
T Consensus       401 ~v~s~~~fspdg~-----~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          401 GISSLNEFNPMGD-----TLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             CCCCEEEECTTSS-----CEEEEC-SSEEEECCCC----
T ss_pred             cEEEEEEECCCCC-----EEEEEc-CCcEEEEECCcCee
Confidence            89988 6999884     677765 88999999998865

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.7e-37  Score=275.12  Aligned_cols=279  Identities=19%  Similarity=0.295  Sum_probs=228.4

Q ss_pred             eEEEEee-CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCccccc
Q 013717          101 IGCIAVH-HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKL  177 (437)
Q Consensus       101 V~~l~~~-~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~  177 (437)
                      .++|+|+ +++||+|.+++|+|||+++++......+   .+|...|.+++|+++.  |++|+.||+|++||+++++....
T Consensus        28 ~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~---~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~  104 (318)
T 4ggc_A           28 LNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQM---EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  104 (318)
T ss_dssp             CBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEEC---CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             ceEEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEe---cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence            4789999 7788877644999999999755444443   5789999999999765  99999999999999998865433


Q ss_pred             ccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCc-ceEEEeecccccEE
Q 013717          178 KTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDL-RCLESIKAHEDAVN  256 (437)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~  256 (437)
                      .                              .+|...+.++.+.+..+++++.++.+++|+.... ..+..+.+|...+.
T Consensus       105 ~------------------------------~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (318)
T 4ggc_A          105 M------------------------------TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC  154 (318)
T ss_dssp             E------------------------------ECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred             e------------------------------cCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceE
Confidence            2                              3688999999999999999999999999998876 45567778999999


Q ss_pred             EEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEE---EEEeCCCcEEEEECCCCccc
Q 013717          257 AVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVL---FSGACDRSILVWDREDSANH  332 (437)
Q Consensus       257 ~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l---~~~~~dg~i~i~d~~~~~~~  332 (437)
                      .+.+.+++. +++++.||.|++||++..............+...|.+++++|++..+   ++++.++.|++||.+.....
T Consensus       155 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~  234 (318)
T 4ggc_A          155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL  234 (318)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE
T ss_pred             EEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc
Confidence            999999998 99999999999999987666555666777788999999999976533   46678899999999876532


Q ss_pred             eEEeeeecccccceEEEEeeC--CEEEE--EeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEE
Q 013717          333 MVVTGALRGHGKAILCLINVA--GLLMS--GSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFS  408 (437)
Q Consensus       333 ~~~~~~~~~~~~~i~~~~~~~--~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s  408 (437)
                      ..     ..+...+..+.+.+  ..+++  |+.|+.|++||+.+++   ++..+.+|.+.|++++|+|++.     +|+|
T Consensus       235 ~~-----~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~---~~~~l~gH~~~V~~l~~spdg~-----~l~S  301 (318)
T 4ggc_A          235 SA-----VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA---KVAELKGHTSRVLSLTMSPDGA-----TVAS  301 (318)
T ss_dssp             EE-----EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSS-----CEEE
T ss_pred             cc-----ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc---EEEEEcCCCCCEEEEEEcCCCC-----EEEE
Confidence            22     22455566666554  45554  4479999999999877   8899999999999999999885     7999


Q ss_pred             ecCCCcEEEEeeccCCC
Q 013717          409 GSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       409 ~~~dg~i~iw~~~~~~~  425 (437)
                      ||.||+|+|||+....|
T Consensus       302 ~s~D~~v~iWd~~~~dP  318 (318)
T 4ggc_A          302 AAADETLRLWRCFELDP  318 (318)
T ss_dssp             EETTTEEEEECCSCCCC
T ss_pred             EecCCeEEEEECCCCCC
Confidence            99999999999987654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=9.3e-38  Score=282.87  Aligned_cols=295  Identities=13%  Similarity=0.078  Sum_probs=221.5

Q ss_pred             cCCeEEEEee--CCEEEEEecC--------eEEEEeCCCCceeeeec-----cccCCCCcccEEEEEEeCCeEEEEe---
Q 013717           98 KLPIGCIAVH--HNFLYAASSH--------EINVYDRTGTTWTSINT-----FNDNDSSSGSVKSVTFCDGKIFTAH---  159 (437)
Q Consensus        98 ~~~V~~l~~~--~~~l~s~~~d--------~v~vwd~~~~~~~~~~~-----~~~~~~h~~~v~~l~~~~~~l~s~~---  159 (437)
                      .-||+|++|+  +++|++|+.+        .|++|++..+.......     ...+.+|...|.+++++++.+++|+   
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~   93 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN   93 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence            3589999999  8899998764        49999987642211110     0123578889999999888766654   


Q ss_pred             --------cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEE-
Q 013717          160 --------QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSV-  228 (437)
Q Consensus       160 --------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~-  228 (437)
                              .|+.+++|++...........                     .........+...+.+++|+|  ++++++ 
T Consensus        94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~v~fSpDg~~la~as  152 (365)
T 4h5i_A           94 STKITQGKGNKHLRKFKYDKVNDQLEFLT---------------------SVDFDASTNADDYTKLVYISREGTVAAIAS  152 (365)
T ss_dssp             HHHHHHTSCCCCEEEEEEETTTTEEEEEE---------------------EECSSCCCCTTCCEEEEEECTTSSCEEEEE
T ss_pred             ccEEEEecCCCcEEEEEecCCCceEEEee---------------------eeceeecCCcccCEEEEEEcCCCCEEEEEE
Confidence                    577889998765432111100                     000011123566789999999  666544 


Q ss_pred             -ECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEc
Q 013717          229 -SWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALS  306 (437)
Q Consensus       229 -~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~  306 (437)
                       +.|++|+|||+++++++..+. |...|.+++|+|+|+ +++++.+ .+++|+...+..  ........|...|.+++|+
T Consensus       153 ~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~--~~~~~~~~~~~~v~~v~fs  228 (365)
T 4h5i_A          153 SKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSC--IARKTDFDKNWSLSKINFI  228 (365)
T ss_dssp             SCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCE--EEEECCCCTTEEEEEEEEE
T ss_pred             CCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcc--eeeeecCCCCCCEEEEEEc
Confidence             478999999999999998886 778899999999999 7777655 455555443321  2223445688899999999


Q ss_pred             cCCCEEEEEeCCC----cEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeee
Q 013717          307 DDGTVLFSGACDR----SILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLA  380 (437)
Q Consensus       307 ~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~  380 (437)
                      |+++++++++.|+    .+++|++............+.+|...|.+++++++  +||+|+.|+.|+|||+++++   ++.
T Consensus       229 pdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~---~~~  305 (365)
T 4h5i_A          229 ADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS---MSK  305 (365)
T ss_dssp             ETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE---EEE
T ss_pred             CCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc---EEE
Confidence            9999999999887    68889987765555555667889999999988765  99999999999999999866   666


Q ss_pred             e-ecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          381 V-LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       381 ~-~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      . +.+|..+|++|+|+|++.     +|+|||.|++||||++.....
T Consensus       306 ~~~~gH~~~V~~v~fSpdg~-----~laS~S~D~tvrvw~ip~~~~  346 (365)
T 4h5i_A          306 IFKQAHSFAITEVTISPDST-----YVASVSAANTIHIIKLPLNYA  346 (365)
T ss_dssp             EETTSSSSCEEEEEECTTSC-----EEEEEETTSEEEEEECCTTTT
T ss_pred             EecCcccCCEEEEEECCCCC-----EEEEEeCCCeEEEEEcCCCCc
Confidence            5 589999999999999984     899999999999999976543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.3e-39  Score=292.09  Aligned_cols=292  Identities=15%  Similarity=0.183  Sum_probs=222.0

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCC
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLT  170 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~  170 (437)
                      .|.++|.+++|+  +++|++|+.| .|++||+.++..+....+   .+|...|.+++|+++.  |++++.|++|++||+.
T Consensus         9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF---SDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB---CCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred             cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE---ecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence            466799999999  8999999999 999999998644555555   6799999999999764  9999999999999998


Q ss_pred             CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc---eE
Q 013717          171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR---CL  245 (437)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~---~~  245 (437)
                      +++.....                           ..+.+|...|.+++|++  ++|++++.|+.|++||+++++   ..
T Consensus        86 ~~~~~~~~---------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  138 (377)
T 3dwl_C           86 PDGTWKQT---------------------------LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVS  138 (377)
T ss_dssp             ---CCCCE---------------------------EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCC
T ss_pred             CCCceeee---------------------------eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceee
Confidence            77511111                           11235899999999998  899999999999999999887   46


Q ss_pred             EEeec-ccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCc--------------ccceeeEEeeCccccEEEEEEccCC
Q 013717          246 ESIKA-HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNE--------------KRHALIATLEKHKSAVNALALSDDG  309 (437)
Q Consensus       246 ~~~~~-~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~~~  309 (437)
                      ..+.. |...|.+++|+|++. |++++.||.|++||+....              .....+..+ .|...|.+++|+|++
T Consensus       139 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~  217 (377)
T 3dwl_C          139 KHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG  217 (377)
T ss_dssp             EEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS
T ss_pred             eEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC
Confidence            77776 999999999999998 9999999999999985322              123455566 899999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCC-C-----------
Q 013717          310 TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDG-R-----------  375 (437)
Q Consensus       310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~-~-----------  375 (437)
                      ++|++++.||.|++||+++++........+.+|...|.++.|+++  +|++|+.++.+ +|+..... .           
T Consensus       218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  296 (377)
T 3dwl_C          218 NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSK  296 (377)
T ss_dssp             SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCC
T ss_pred             CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccc
Confidence            999999999999999999887655556667889999999888755  77777766655 66654211 0           


Q ss_pred             ---------------e---------eee-------------eeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEE
Q 013717          376 ---------------F---------GCL-------------AVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAW  418 (437)
Q Consensus       376 ---------------~---------~~~-------------~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  418 (437)
                                     .         ...             .....|.+.|+++++.+..+. ....|+|||.||.|++|
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~-~~~~~~s~g~Dg~i~iW  375 (377)
T 3dwl_C          297 TSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPG-NITAFTSSGTDGRVVLW  375 (377)
T ss_dssp             CCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETT-EEEEEEEEETTSEEEEE
T ss_pred             cccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCC-ceEEEEeecCCCcEEEe
Confidence                           0         000             011239999999998775432 12369999999999999


Q ss_pred             ee
Q 013717          419 QV  420 (437)
Q Consensus       419 ~~  420 (437)
                      |+
T Consensus       376 dl  377 (377)
T 3dwl_C          376 TL  377 (377)
T ss_dssp             CC
T ss_pred             cC
Confidence            86

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-37  Score=288.17  Aligned_cols=298  Identities=14%  Similarity=0.178  Sum_probs=237.5

Q ss_pred             eEEecCCCcceeeeecCccCCeEEEEee--CC-EEEEEecC-eEEEEeC----CCCce----eeeeccc-cCC------C
Q 013717           80 INFSSASHLCINSVQLGHKLPIGCIAVH--HN-FLYAASSH-EINVYDR----TGTTW----TSINTFN-DND------S  140 (437)
Q Consensus        80 i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~-~l~s~~~d-~v~vwd~----~~~~~----~~~~~~~-~~~------~  140 (437)
                      +.+|+.+..........|.+.|.+++|+  ++ +||+|+.| .|++||+    .+++.    .....+. ...      +
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (425)
T 1r5m_A           27 DSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGK  106 (425)
T ss_dssp             -------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC-----
T ss_pred             cccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccC
Confidence            3456665555554444788999999999  77 99999999 9999999    77541    0111111 111      2


Q ss_pred             CcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717          141 SSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL  218 (437)
Q Consensus       141 h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  218 (437)
                      |...|.+++|+++.  |++++.||.|++||. +++....                              +..|...|.++
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~~~~~------------------------------~~~~~~~v~~~  155 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGALLNV------------------------------LNFHRAPIVSV  155 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEE------------------------------ECCCCSCEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCeeee------------------------------ccCCCccEEEE
Confidence            68899999999765  999999999999993 3332221                              23589999999


Q ss_pred             EeCC--CeEEEEECCCcEEEEECCCcceEEEeeccccc---------------EEEEEEecCCeEEEEeCCCeEEEecCC
Q 013717          219 AVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDA---------------VNAVAVSAGGTVYTGSADRKIRVWAKP  281 (437)
Q Consensus       219 ~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~l~~~~~dg~v~iwd~~  281 (437)
                      +|++  ++|++++.||.|++||+.+++.+..+..+...               +.+++|+|++.+++++.+|.|++||+.
T Consensus       156 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~  235 (425)
T 1r5m_A          156 KWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQIT  235 (425)
T ss_dssp             EECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETT
T ss_pred             EECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcC
Confidence            9998  88999999999999999999999888877666               999999999999999999999999987


Q ss_pred             CCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEe
Q 013717          282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGS  360 (437)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~  360 (437)
                      ...    .+..+..|...|.+++|+|++++|++++.||.|++||+++++..    ..+.+|...+.++.++++ ++++++
T Consensus       236 ~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~l~~~~  307 (425)
T 1r5m_A          236 EKT----PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ----NCFYGHSQSIVSASWVGDDKVISCS  307 (425)
T ss_dssp             CSS----CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCS----EEECCCSSCEEEEEEETTTEEEEEE
T ss_pred             CCc----eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccc----eEecCCCccEEEEEECCCCEEEEEe
Confidence            543    55667789999999999999999999999999999999876643    334668889999999876 999999


Q ss_pred             CCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          361 ADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       361 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      .||.|++||+.+++   .+..+..|...|.+++|+|++.     +|++++.||.|++|++..+.
T Consensus       308 ~d~~i~i~d~~~~~---~~~~~~~~~~~i~~~~~s~~~~-----~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          308 MDGSVRLWSLKQNT---LLALSIVDGVPIFAGRISQDGQ-----KYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             TTSEEEEEETTTTE---EEEEEECTTCCEEEEEECTTSS-----EEEEEETTSCEEEEECHHHH
T ss_pred             CCCcEEEEECCCCc---EeEecccCCccEEEEEEcCCCC-----EEEEEECCCeEEEEECCCCc
Confidence            99999999998765   7888889999999999999874     89999999999999998765

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.8e-37  Score=281.53  Aligned_cols=272  Identities=21%  Similarity=0.351  Sum_probs=223.0

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeeeecCcc------------------CCeEEEEee--CCEEEEEecC-e
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHK------------------LPIGCIAVH--HNFLYAASSH-E  118 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~------------------~~V~~l~~~--~~~l~s~~~d-~  118 (437)
                      ..+.|.|....+++++ ++.+.+|+...........+|.                  ..|.+++|+  +++|++|+.| .
T Consensus        68 ~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~  146 (393)
T 1erj_A           68 CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL  146 (393)
T ss_dssp             CEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCe
Confidence            5789999999998865 7899999987644333222443                  249999999  8999999999 9


Q ss_pred             EEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCC
Q 013717          119 INVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNS  196 (437)
Q Consensus       119 v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (437)
                      |++||+.++  +....+   .+|...|.+++|+++.  |++++.|++|++||+++++....+                  
T Consensus       147 i~iwd~~~~--~~~~~~---~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~------------------  203 (393)
T 1erj_A          147 IRIWDIENR--KIVMIL---QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL------------------  203 (393)
T ss_dssp             EEEEETTTT--EEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE------------------
T ss_pred             EEEEECCCC--cEEEEE---ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE------------------
Confidence            999999985  344444   5799999999999765  999999999999999987643322                  


Q ss_pred             eeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEe-------ecccccEEEEEEecCCe-
Q 013717          197 YVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESI-------KAHEDAVNAVAVSAGGT-  265 (437)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~-  265 (437)
                                   .+...+.++++++   .++++|+.||.|++||+++++.+..+       .+|...|.+++|+|++. 
T Consensus       204 -------------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~  270 (393)
T 1erj_A          204 -------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS  270 (393)
T ss_dssp             -------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE
T ss_pred             -------------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE
Confidence                         2667899999986   79999999999999999999888776       46889999999999998 


Q ss_pred             EEEEeCCCeEEEecCCCCcc--------cceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEee
Q 013717          266 VYTGSADRKIRVWAKPFNEK--------RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTG  337 (437)
Q Consensus       266 l~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  337 (437)
                      |++|+.||.|++||++....        .......+.+|...|.+++|+|++++|++|+.|+.|++||+++++    ...
T Consensus       271 l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~----~~~  346 (393)
T 1erj_A          271 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN----PLL  346 (393)
T ss_dssp             EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC----EEE
T ss_pred             EEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe----EEE
Confidence            99999999999999875321        123456678899999999999999999999999999999998876    344


Q ss_pred             eecccccceEEEEeeC--------CEEEEEeCCCcEEEeeCCC
Q 013717          338 ALRGHGKAILCLINVA--------GLLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       338 ~~~~~~~~i~~~~~~~--------~~l~~~~~dg~i~iwd~~~  372 (437)
                      .+.+|...|.++++.+        ++|++|+.||+|+||++..
T Consensus       347 ~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          347 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             EEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             EECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            5678999999998764        4899999999999999864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.2e-37  Score=282.36  Aligned_cols=286  Identities=17%  Similarity=0.251  Sum_probs=229.5

Q ss_pred             CccCC--eEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCC
Q 013717           96 GHKLP--IGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLT  170 (437)
Q Consensus        96 ~h~~~--V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~  170 (437)
                      +|...  +.+++|+++.+++++.| .|++||+.+++.......    .|...|.+++|+++.  |++|+.||.|++||+.
T Consensus        89 ~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  164 (401)
T 4aez_A           89 GIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAET----DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE  164 (401)
T ss_dssp             TCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEEC----CTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeec----CCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence            66554  55677777777888888 999999999755444432    489999999999765  9999999999999998


Q ss_pred             CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECC-CcceEEEee
Q 013717          171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRAS-DLRCLESIK  249 (437)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~  249 (437)
                      +++....+                              .+|...|.+++|++.++++++.||.|++||++ ....+..+.
T Consensus       165 ~~~~~~~~------------------------------~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  214 (401)
T 4aez_A          165 SQTKLRTM------------------------------AGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQ  214 (401)
T ss_dssp             TCCEEEEE------------------------------CCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             CCeEEEEe------------------------------cCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEc
Confidence            87644332                              35999999999999999999999999999998 566788888


Q ss_pred             cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCC-EEEEEe--CCCcEEEEE
Q 013717          250 AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGT-VLFSGA--CDRSILVWD  325 (437)
Q Consensus       250 ~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~dg~i~i~d  325 (437)
                      .|...|.+++|+|++. |++|+.||.|++||++..    .....+..|...|.+++|+|++. ++++++  .|+.|++||
T Consensus       215 ~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d  290 (401)
T 4aez_A          215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS----IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN  290 (401)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS----SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEE
T ss_pred             CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC----CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEE
Confidence            9999999999999998 999999999999998754    35667778999999999999775 555554  799999999


Q ss_pred             CCCCccceEEeeeecccccceEEEEeeCC--EEEE--EeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCC
Q 013717          326 REDSANHMVVTGALRGHGKAILCLINVAG--LLMS--GSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQN  401 (437)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  401 (437)
                      +++++....+     .+...+.++.++++  ++++  |+.||.|++||+.+++ ......+.+|...|.+++|+|++.  
T Consensus       291 ~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~-~~~~~~~~~h~~~v~~~~~s~dg~--  362 (401)
T 4aez_A          291 AATGARVNTV-----DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG-LTKQVDIPAHDTRVLYSALSPDGR--  362 (401)
T ss_dssp             TTTCCEEEEE-----ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE-EEEEEEEECCSSCCCEEEECTTSS--
T ss_pred             CCCCCEEEEE-----eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc-ceeEEEecCCCCCEEEEEECCCCC--
Confidence            9987643332     24567888888755  7777  4489999999998754 234556789999999999999884  


Q ss_pred             ceEEEEEecCCCcEEEEeeccCCCCCCCe
Q 013717          402 GVVSVFSGSLDGEIRAWQVSVSCPNSSPL  430 (437)
Q Consensus       402 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  430 (437)
                         +|++++.||.|++|++..++....+.
T Consensus       363 ---~l~s~~~dg~i~iw~~~~~~~~~~~~  388 (401)
T 4aez_A          363 ---ILSTAASDENLKFWRVYDGDHVKRPI  388 (401)
T ss_dssp             ---EEEEECTTSEEEEEECCC--------
T ss_pred             ---EEEEEeCCCcEEEEECCCCccccccc
Confidence               89999999999999999887655443

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-37  Score=275.79  Aligned_cols=251  Identities=24%  Similarity=0.344  Sum_probs=203.5

Q ss_pred             CCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717          139 DSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL  218 (437)
Q Consensus       139 ~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  218 (437)
                      .+|.+.|.+++|+++.|++|+.|++|++||+..+.... ...+.                         ..+|...|.++
T Consensus        11 ~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~-~~~~~-------------------------~~~h~~~v~~v   64 (330)
T 2hes_X           11 KLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTL-IDVLD-------------------------ETAHKKAIRSV   64 (330)
T ss_dssp             ECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEE-EEEEC-------------------------TTCCCSCEEEE
T ss_pred             ccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEE-EEEEe-------------------------cCCccCCEEEE
Confidence            67999999999999999999999999999998643111 00000                         01389999999


Q ss_pred             EeCC--CeEEEEECCCcEEEEECCC-------cceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccce
Q 013717          219 AVNN--GLIYSVSWDKSLKIWRASD-------LRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHA  288 (437)
Q Consensus       219 ~~~~--~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~  288 (437)
                      +|+|  ++|++|+.|++|++||+..       .+.+..+.+|...|.+++|+|++. |++|+.|+.|++||++......+
T Consensus        65 ~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~  144 (330)
T 2hes_X           65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYE  144 (330)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCE
T ss_pred             EECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeE
Confidence            9998  8999999999999999853       356677889999999999999998 99999999999999964444456


Q ss_pred             eeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC----EEEEEeCCCc
Q 013717          289 LIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG----LLMSGSADRT  364 (437)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~l~~~~~dg~  364 (437)
                      .+..+.+|...|.+++|+|++++|++++.|++|++||...+.  ......+.+|...|.++.++++    +|++|+.|++
T Consensus       145 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~  222 (330)
T 2hes_X          145 CISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD--WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST  222 (330)
T ss_dssp             EEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC
T ss_pred             EEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC--eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe
Confidence            677888999999999999999999999999999999987542  2245567889999999998864    7999999999


Q ss_pred             EEEeeCCCCC-----CeeeeeeecC-CCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          365 VRIWQRGSDG-----RFGCLAVLEG-HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       365 i~iwd~~~~~-----~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      |++||+..+.     .+.+...+.+ |...|.+++|++++      +|++++.||.|++|++..+
T Consensus       223 v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~------~l~s~~~dg~v~iw~~~~~  281 (330)
T 2hes_X          223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG------LIASVGADGVLAVYEEVDG  281 (330)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS------CEEEEETTSCEEEEEEETT
T ss_pred             EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC------EEEEEeCCCEEEEEEcCCC
Confidence            9999987542     1134555555 99999999999765      6999999999999998765

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.7e-36  Score=293.39  Aligned_cols=342  Identities=16%  Similarity=0.169  Sum_probs=252.1

Q ss_pred             cceeeccccccccccCCC----ceeEEecCCCcceeeeec-CccCCeEEEEee--CC-EEEEEecC-eEEEEeCCCCcee
Q 013717           60 LSLQTLPSVPSLQKLSPD----ETINFSSASHLCINSVQL-GHKLPIGCIAVH--HN-FLYAASSH-EINVYDRTGTTWT  130 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~d----g~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~-~l~s~~~d-~v~vwd~~~~~~~  130 (437)
                      ..+.+.|....+++.+.+    +.|.+|+.   ......+ +|...|.+++|+  ++ +|++++.| .|++||+.++  +
T Consensus       120 ~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~--~  194 (615)
T 1pgu_A          120 SDISWDFEGRRLCVVGEGRDNFGVFISWDS---GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF--K  194 (615)
T ss_dssp             EEEEECTTSSEEEEEECCSSCSEEEEETTT---CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB--E
T ss_pred             EEEEEeCCCCEEEEeccCCCCccEEEEEEC---CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc--c
Confidence            467888999999988887    78999983   3456666 999999999999  44 89999999 9999999884  4


Q ss_pred             eeeccccCCCCcc---cEEEEEEeCC-e--EEEEecCCeEEEEeCCCCcccccccc---cCccccceeeecCCCCeeEEe
Q 013717          131 SINTFNDNDSSSG---SVKSVTFCDG-K--IFTAHQDCKIRVWQLTPTKHHKLKTT---LPTVNDRLLRFMLPNSYVTVR  201 (437)
Q Consensus       131 ~~~~~~~~~~h~~---~v~~l~~~~~-~--l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  201 (437)
                      ....+   .+|..   .|.+++|+++ .  |++++.||.|++||+.+++....+..   ..........+. ....+...
T Consensus       195 ~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~  270 (615)
T 1pgu_A          195 FSASD---RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATV  270 (615)
T ss_dssp             EEEEE---CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEE
T ss_pred             eeeee---cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEE
Confidence            45555   56888   9999999977 4  99999999999999998876655511   111111111222 22222222


Q ss_pred             ecc--c-----------eeeecC----CCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEE---
Q 013717          202 RHK--K-----------KLWIEH----GDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAV---  260 (437)
Q Consensus       202 ~~~--~-----------~~~~~~----~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---  260 (437)
                      ...  .           ..+..+    ...+.++.+.. +++++++.||.|++||+.+++.+..+..|...|.+++|   
T Consensus       271 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l  350 (615)
T 1pgu_A          271 GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPL  350 (615)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTT
T ss_pred             cCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCc
Confidence            111  1           112222    35566666644 88888888888888888887777777666555555555   


Q ss_pred             ------------------------------ecCCeEEEEeCCCeEEEecCCCCcc-------------------------
Q 013717          261 ------------------------------SAGGTVYTGSADRKIRVWAKPFNEK-------------------------  285 (437)
Q Consensus       261 ------------------------------~~~~~l~~~~~dg~v~iwd~~~~~~-------------------------  285 (437)
                                                    .++..+++++.|+.|++||+.....                         
T Consensus       351 ~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  430 (615)
T 1pgu_A          351 ISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLL  430 (615)
T ss_dssp             EEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEE
T ss_pred             EEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceE
Confidence                                          2222367777777777776542110                         


Q ss_pred             -----------------------------------cc----------eee-EEeeCccccEEEEEEccCCCEEEEEeCCC
Q 013717          286 -----------------------------------RH----------ALI-ATLEKHKSAVNALALSDDGTVLFSGACDR  319 (437)
Q Consensus       286 -----------------------------------~~----------~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  319 (437)
                                                         ..          ... ..+..|...|.+++|+|+|++|++++.||
T Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  510 (615)
T 1pgu_A          431 ILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMG  510 (615)
T ss_dssp             EEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCC
Confidence                                               00          011 34456788999999999999999999999


Q ss_pred             cEEEEECCCCccceEEeeeecc-cccceEEEEeeC------------CEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCC
Q 013717          320 SILVWDREDSANHMVVTGALRG-HGKAILCLINVA------------GLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHT  386 (437)
Q Consensus       320 ~i~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~  386 (437)
                      .|++||+.+++    ....+.+ |...|.++++++            .+|++++.||.|++||+.++.  .++..+.+|.
T Consensus       511 ~i~iw~~~~~~----~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~h~  584 (615)
T 1pgu_A          511 KILLYDLQSRE----VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM--KIIKALNAHK  584 (615)
T ss_dssp             CEEEEETTTTE----EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT--CCEEETTSST
T ss_pred             eEEEeeCCCCc----ceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc--eechhhhcCc
Confidence            99999998765    3444556 899999999865            499999999999999999874  3788899999


Q ss_pred             CCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717          387 KPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       387 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                      ..|++++|+|++     + |++++.||.|++|+++.
T Consensus       585 ~~v~~l~~s~~~-----~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          585 DGVNNLLWETPS-----T-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             TCEEEEEEEETT-----E-EEEEETTSCEEEEEEC-
T ss_pred             cceEEEEEcCCC-----C-eEEecCCceEEEEeeec
Confidence            999999999998     6 99999999999999975

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-37  Score=307.85  Aligned_cols=356  Identities=12%  Similarity=0.126  Sum_probs=250.9

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceee----------eec-CccCCeEEEEee---CCEEEEEecC-eEEEEeC
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINS----------VQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDR  124 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~----------~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~  124 (437)
                      .++.+.|....+++++.||.|++|+........          ..+ +|.++|.+++|+   +..|++|+.| .| +||+
T Consensus       102 ~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~  180 (902)
T 2oaj_A          102 TSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSL  180 (902)
T ss_dssp             EEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEET
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEEC
Confidence            577889999999999999999999997654321          234 899999999999   3689999999 99 9999


Q ss_pred             CCCceeeeecccc---------------CCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCccccc--ccccCc--
Q 013717          125 TGTTWTSINTFND---------------NDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKL--KTTLPT--  183 (437)
Q Consensus       125 ~~~~~~~~~~~~~---------------~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~--  183 (437)
                      .+++.  ...+..               ...|...|.+++|+|++  |++++.||+|++||+++++....  +.....  
T Consensus       181 ~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~  258 (902)
T 2oaj_A          181 VENEI--KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINV  258 (902)
T ss_dssp             TTTEE--EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTS
T ss_pred             CCCce--EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCC
Confidence            98643  333321               12356889999999775  99999999999999988765432  110000  


Q ss_pred             -----------cccce--eeec---CCC-Ce-eEEeec-------c-----------------------------ceeee
Q 013717          184 -----------VNDRL--LRFM---LPN-SY-VTVRRH-------K-----------------------------KKLWI  209 (437)
Q Consensus       184 -----------~~~~~--~~~~---~~~-~~-~~~~~~-------~-----------------------------~~~~~  209 (437)
                                 ....+  ..+.   .++ .. +.....       .                             ...+.
T Consensus       259 ~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  338 (902)
T 2oaj_A          259 PQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFP  338 (902)
T ss_dssp             CCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEEC
T ss_pred             CCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEe
Confidence                       01111  1111   111 11 111101       0                             11121


Q ss_pred             -cCCCcEEEEEeCC------------CeEEEEECCCcEEEEECCCcceEEE-------e---------------------
Q 013717          210 -EHGDAVTGLAVNN------------GLIYSVSWDKSLKIWRASDLRCLES-------I---------------------  248 (437)
Q Consensus       210 -~~~~~v~~~~~~~------------~~l~~~~~dg~i~iwd~~~~~~~~~-------~---------------------  248 (437)
                       .+...|.++.+.+            ..+++++.||.|++||+.++.....       +                     
T Consensus       339 ~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~  418 (902)
T 2oaj_A          339 LPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWL  418 (902)
T ss_dssp             CSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHH
T ss_pred             cCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHH
Confidence             3567777777532            3788999999999999977643322       1                     


Q ss_pred             -------------ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEE--ee-----CccccEEEEEEcc
Q 013717          249 -------------KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIAT--LE-----KHKSAVNALALSD  307 (437)
Q Consensus       249 -------------~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~-----~~~~~i~~~~~~~  307 (437)
                                   .+|...+.+++|+|++. |++|+.|++|++||+............  +.     +|...|.+++|+|
T Consensus       419 ~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp  498 (902)
T 2oaj_A          419 GALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA  498 (902)
T ss_dssp             HHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET
T ss_pred             HHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC
Confidence                         22333444455678888 999999999999999765321111111  11     6888999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCccc-----------------------------------------eEEeeeecccccce
Q 013717          308 DGTVLFSGACDRSILVWDREDSANH-----------------------------------------MVVTGALRGHGKAI  346 (437)
Q Consensus       308 ~~~~l~~~~~dg~i~i~d~~~~~~~-----------------------------------------~~~~~~~~~~~~~i  346 (437)
                      ||++||+|+.||+|++||+.+++..                                         ......+.+|...|
T Consensus       499 dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V  578 (902)
T 2oaj_A          499 ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKT  578 (902)
T ss_dssp             TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSE
T ss_pred             CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcE
Confidence            9999999999999999999765210                                         12345577899999


Q ss_pred             EEEEeeCC-EEEEEeCCCcEEEeeCCCCCCee--eeeeec-CCCCCeeEEEEE-----ccCCCCceEEEEEecCCCcEEE
Q 013717          347 LCLINVAG-LLMSGSADRTVRIWQRGSDGRFG--CLAVLE-GHTKPVKSLTAV-----TEEGQNGVVSVFSGSLDGEIRA  417 (437)
Q Consensus       347 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~-~h~~~v~~l~~~-----~~~~~~~~~~l~s~~~dg~i~i  417 (437)
                      .+++|+++ +||+|+.|++|+|||+++.....  .+..+. +|.+.|++|+|+     ||+.  .+++|++|+.||+|++
T Consensus       579 ~svafSpdG~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~--~~~~l~sgs~D~tv~~  656 (902)
T 2oaj_A          579 SAINNSNIGFVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGY--SSILMVCGTDMGEVIT  656 (902)
T ss_dssp             EEEEECBTSEEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSS--EEEEEEEEETTSEEEE
T ss_pred             EEEEecCCcEEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCC--cceEEEEEecCCcEEE
Confidence            99988755 99999999999999988654110  112343 899999999999     8751  2258999999999999


Q ss_pred             Eee
Q 013717          418 WQV  420 (437)
Q Consensus       418 w~~  420 (437)
                      ||+
T Consensus       657 wd~  659 (902)
T 2oaj_A          657 YKI  659 (902)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            999

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=6.9e-37  Score=269.53  Aligned_cols=249  Identities=18%  Similarity=0.262  Sum_probs=205.5

Q ss_pred             CCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717          139 DSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT  216 (437)
Q Consensus       139 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  216 (437)
                      .+|...|.+++|+++.  |++|+.|++|++||+...... .                           ...+.+|..+|.
T Consensus         6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~-~---------------------------~~~l~gH~~~V~   57 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK-L---------------------------IDTLTGHEGPVW   57 (297)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC-C---------------------------CEEECCCSSCEE
T ss_pred             cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE-E---------------------------EEEEccccCCeE
Confidence            5799999999999765  999999999999999753211 1                           123357999999


Q ss_pred             EEEeCC----CeEEEEECCCcEEEEECCCcc--eEEEeecccccEEEEEEecC--Ce-EEEEeCCCeEEEecCCCCcccc
Q 013717          217 GLAVNN----GLIYSVSWDKSLKIWRASDLR--CLESIKAHEDAVNAVAVSAG--GT-VYTGSADRKIRVWAKPFNEKRH  287 (437)
Q Consensus       217 ~~~~~~----~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~-l~~~~~dg~v~iwd~~~~~~~~  287 (437)
                      +++|++    .+|++|+.||+|++||+++++  .+..+..|...|.+++|+|+  +. |++++.||.|++||++..... 
T Consensus        58 ~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~-  136 (297)
T 2pm7_B           58 RVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT-  136 (297)
T ss_dssp             EEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB-
T ss_pred             EEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce-
Confidence            999964    689999999999999998874  55667789999999999997  66 999999999999998754321 


Q ss_pred             eeeEEeeCccccEEEEEEccC-------------CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC-
Q 013717          288 ALIATLEKHKSAVNALALSDD-------------GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA-  353 (437)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~-------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  353 (437)
                       ....+.+|...|.+++|+|+             +++|++|+.|++|++||++++.........+.+|...|.+++|++ 
T Consensus       137 -~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~  215 (297)
T 2pm7_B          137 -SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT  215 (297)
T ss_dssp             -CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred             -eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCC
Confidence             13456789999999999997             579999999999999999877655556667889999999999986 


Q ss_pred             ----CEEEEEeCCCcEEEeeCCCCCCeeeeeee--cCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717          354 ----GLLMSGSADRTVRIWQRGSDGRFGCLAVL--EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       354 ----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                          .+|++++.|++|+|||++..........+  ..|...|.+++|+|++.     +|++++.||.|++|+...
T Consensus       216 ~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-----~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          216 VLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-----VLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             CSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC-----CEEEEETTSCEEEEEECT
T ss_pred             CCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCC-----EEEEEcCCCcEEEEEECC
Confidence                38999999999999999864321122233  57889999999999985     699999999999999874

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.4e-36  Score=267.58  Aligned_cols=258  Identities=19%  Similarity=0.273  Sum_probs=205.7

Q ss_pred             eec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC---C-eEEEEecCCeE
Q 013717           93 VQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD---G-KIFTAHQDCKI  164 (437)
Q Consensus        93 ~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~-~l~s~~~dg~i  164 (437)
                      ..+ +|.+.|.+++|+  |++||+|+.| .|+|||+..+..+.+..+   .+|.+.|.+++|++   + .|++|+.|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l---~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v   79 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL---TGHEGPVWRVDWAHPKFGTILASCSYDGKV   79 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE---CCCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE---ccccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence            345 999999999999  9999999999 999999986434445555   68999999999974   2 39999999999


Q ss_pred             EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEEEECCCcEEEEECC
Q 013717          165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYSVSWDKSLKIWRAS  240 (437)
Q Consensus       165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~  240 (437)
                      ++||+++++....                            ..+.+|...|.+++|+|    .+|++++.||.|++||++
T Consensus        80 ~iWd~~~~~~~~~----------------------------~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~  131 (297)
T 2pm7_B           80 MIWKEENGRWSQI----------------------------AVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFK  131 (297)
T ss_dssp             EEEEBSSSCBCCC----------------------------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBC
T ss_pred             EEEEcCCCceEEE----------------------------EEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEec
Confidence            9999987642111                            11235889999999987    589999999999999998


Q ss_pred             Ccc--eEEEeecccccEEEEEEecC-------------Ce-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEE
Q 013717          241 DLR--CLESIKAHEDAVNAVAVSAG-------------GT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALA  304 (437)
Q Consensus       241 ~~~--~~~~~~~~~~~v~~~~~~~~-------------~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~  304 (437)
                      ++.  ....+.+|...|.+++|+|+             +. |++|+.|+.|++||++...........+.+|...|.+++
T Consensus       132 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~  211 (297)
T 2pm7_B          132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA  211 (297)
T ss_dssp             SSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred             CCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEE
Confidence            763  24566789999999999997             34 999999999999998765544556678889999999999


Q ss_pred             EccCC---CEEEEEeCCCcEEEEECCCCccceE-EeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeee
Q 013717          305 LSDDG---TVLFSGACDRSILVWDREDSANHMV-VTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGC  378 (437)
Q Consensus       305 ~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~  378 (437)
                      |+|++   ++|++++.|++|++||++....... .......|...+.+++|+++  +|++++.||.|+||+......+.+
T Consensus       212 ~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w~~  291 (297)
T 2pm7_B          212 WSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEP  291 (297)
T ss_dssp             ECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred             ECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcEEe
Confidence            99985   8999999999999999986532211 11112467788888888754  999999999999999876554554


Q ss_pred             eee
Q 013717          379 LAV  381 (437)
Q Consensus       379 ~~~  381 (437)
                      +..
T Consensus       292 ~~~  294 (297)
T 2pm7_B          292 AGE  294 (297)
T ss_dssp             C--
T ss_pred             ccc
Confidence            443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.2e-36  Score=273.90  Aligned_cols=270  Identities=22%  Similarity=0.314  Sum_probs=214.0

Q ss_pred             cc-ccccccccCCCceeEEecCCCc------ceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeee
Q 013717           65 LP-SVPSLQKLSPDETINFSSASHL------CINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSIN  133 (437)
Q Consensus        65 ~~-~~~~~~s~s~dg~i~~~~~~~~------~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~  133 (437)
                      .+ ....+++++.|++|++|+....      ..+...+ +|...|.+++|+  +.+|++|+.| +|++||+.+++  .+.
T Consensus        35 ~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~--~~~  112 (343)
T 2xzm_R           35 ENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT--TYK  112 (343)
T ss_dssp             TTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC--EEE
T ss_pred             cCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc--EEE
Confidence            44 6778999999999999998542      3455667 999999999999  8999999999 99999999853  344


Q ss_pred             ccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717          134 TFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH  211 (437)
Q Consensus       134 ~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (437)
                      .+   .+|...|.+++|+|+.  |++++.|++|++||+......... ..                           .+|
T Consensus       113 ~~---~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~---------------------------~~~  161 (343)
T 2xzm_R          113 RF---VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSA-EK---------------------------ENH  161 (343)
T ss_dssp             EE---ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECC-TT---------------------------TSC
T ss_pred             EE---cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeee-cc---------------------------cCC
Confidence            44   5799999999999765  999999999999999743211111 00                           248


Q ss_pred             CCcEEEEEeCC------------CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEe
Q 013717          212 GDAVTGLAVNN------------GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVW  278 (437)
Q Consensus       212 ~~~v~~~~~~~------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iw  278 (437)
                      ...|.+++|+|            .++++++.||.|++|| ...+....+..|...|.+++|+|++. |++|+.||.|++|
T Consensus       162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iw  240 (343)
T 2xzm_R          162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW  240 (343)
T ss_dssp             SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEE
Confidence            88999999987            3799999999999999 45677778889999999999999998 9999999999999


Q ss_pred             cCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeee---------ecccccceEEE
Q 013717          279 AKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGA---------LRGHGKAILCL  349 (437)
Q Consensus       279 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~~~~~i~~~  349 (437)
                      |+.....   ....+ .+...|.+++|+|++.+++++ .|+.|++||+.+.+........         ..+|...+.++
T Consensus       241 d~~~~~~---~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  315 (343)
T 2xzm_R          241 DILNLTY---PQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSL  315 (343)
T ss_dssp             ESSCCSS---CSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEE
T ss_pred             ECCCCcc---cceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEE
Confidence            9853332   22223 245679999999999887655 5888999999876543311111         12677889888


Q ss_pred             EeeCC--EEEEEeCCCcEEEeeCCCC
Q 013717          350 INVAG--LLMSGSADRTVRIWQRGSD  373 (437)
Q Consensus       350 ~~~~~--~l~~~~~dg~i~iwd~~~~  373 (437)
                      +|+++  +|++|+.||.|++|+++++
T Consensus       316 ~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          316 AWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             EECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             EECCCCCeEEEecCCceEEEEEEEcc
Confidence            88754  9999999999999998753

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.8e-37  Score=320.54  Aligned_cols=320  Identities=17%  Similarity=0.281  Sum_probs=256.2

Q ss_pred             cccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeee
Q 013717           58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSIN  133 (437)
Q Consensus        58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~  133 (437)
                      ....+.+.|....+++++.||+|.+|+..... .+..+ +|...|.+++|+  +++|++|+.| .|++||+.++  +.+.
T Consensus       617 ~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~--~~~~  693 (1249)
T 3sfz_A          617 AVYHACFSQDGQRIASCGADKTLQVFKAETGE-KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG--KLVH  693 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC--ceEE
Confidence            33578999999999999999999999997754 44555 999999999999  8999999999 9999999985  4444


Q ss_pred             ccccCCCCcccEEEEEEeCC--e--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717          134 TFNDNDSSSGSVKSVTFCDG--K--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI  209 (437)
Q Consensus       134 ~~~~~~~h~~~v~~l~~~~~--~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (437)
                      .+   .+|...|.+++|+++  .  +++++.||.|++||+.+++....+                              .
T Consensus       694 ~~---~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~------------------------------~  740 (1249)
T 3sfz_A          694 TY---DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM------------------------------F  740 (1249)
T ss_dssp             EE---ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE------------------------------C
T ss_pred             EE---cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee------------------------------c
Confidence            44   579999999999963  2  889999999999999987644332                              2


Q ss_pred             cCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEE----------------------------------------
Q 013717          210 EHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLES----------------------------------------  247 (437)
Q Consensus       210 ~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~----------------------------------------  247 (437)
                      +|...|.+++|+|  +++++++.||.|++||+.+++....                                        
T Consensus       741 ~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~  820 (1249)
T 3sfz_A          741 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK  820 (1249)
T ss_dssp             CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTE
T ss_pred             CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCc
Confidence            5777777777777  6777777777777777765543322                                        


Q ss_pred             --------------ee-cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCE
Q 013717          248 --------------IK-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTV  311 (437)
Q Consensus       248 --------------~~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  311 (437)
                                    +. +|...|.+++|+|++. +++++.||.|++||+...    ..+..+.+|...|.+++|+|+|++
T Consensus       821 v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~----~~~~~~~~h~~~v~~v~~spdg~~  896 (1249)
T 3sfz_A          821 VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR----LKVADCRGHLSWVHGVMFSPDGSS  896 (1249)
T ss_dssp             EEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSE
T ss_pred             EEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----ceeeecCCCccceEEEEECCCCCE
Confidence                          22 5677899999999998 999999999999988654    467788899999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCccce----------------------------EEee-----eecccccceEEEEeeC--CEE
Q 013717          312 LFSGACDRSILVWDREDSANHM----------------------------VVTG-----ALRGHGKAILCLINVA--GLL  356 (437)
Q Consensus       312 l~~~~~dg~i~i~d~~~~~~~~----------------------------~~~~-----~~~~~~~~i~~~~~~~--~~l  356 (437)
                      |++++.||.|++||+.......                            ....     ....+...+.++++++  +++
T Consensus       897 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l  976 (1249)
T 3sfz_A          897 FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYV  976 (1249)
T ss_dssp             EEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEE
T ss_pred             EEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEE
Confidence            9999999999999975311000                            0000     0011234566666664  499


Q ss_pred             EEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          357 MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       357 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      ++|+.||.|++||+.++.   .+..+.+|...|++++|+|++.     +|++++.||.|++|++.+++.
T Consensus       977 ~~g~~~g~i~i~d~~~~~---~~~~~~~h~~~v~~l~~s~dg~-----~l~s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A          977 AFGDEDGAIKIIELPNNR---VFSSGVGHKKAVRHIQFTADGK-----TLISSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp             EEEETTSCCEEEETTTTS---CEEECCCCSSCCCCEEECSSSS-----CEEEECSSSBEEEEETTTTEE
T ss_pred             EEEcCCCCEEEEEcCCCc---eeeecccCCCceEEEEECCCCC-----EEEEEcCCCEEEEEECCCCce
Confidence            999999999999999876   6778889999999999999985     699999999999999987653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.5e-36  Score=317.91  Aligned_cols=348  Identities=18%  Similarity=0.247  Sum_probs=279.3

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee----CCEEEEEecC-eEEEEeCCCCceeeee
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH----HNFLYAASSH-EINVYDRTGTTWTSIN  133 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~----~~~l~s~~~d-~v~vwd~~~~~~~~~~  133 (437)
                      .++.+.|....+++++.||.|.+|+.... .++..+ +|...|.+++|+    +.++++|+.| .|++||+.++.  ...
T Consensus       661 ~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~--~~~  737 (1249)
T 3sfz_A          661 LCCAFSSDDSYIATCSADKKVKIWDSATG-KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE--CRN  737 (1249)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS--EEE
T ss_pred             EEEEEecCCCEEEEEeCCCeEEEEECCCC-ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc--hhh
Confidence            57889999999999999999999999874 555666 999999999997    4589999999 99999999853  344


Q ss_pred             ccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCcc------------ccceeeecCCCCeeE
Q 013717          134 TFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTV------------NDRLLRFMLPNSYVT  199 (437)
Q Consensus       134 ~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~  199 (437)
                      .+   .+|...|.+++|+++.  +++++.||.|++||+.+++...........            ......+......+.
T Consensus       738 ~~---~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  814 (1249)
T 3sfz_A          738 TM---FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII  814 (1249)
T ss_dssp             EE---CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEE
T ss_pred             ee---cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEE
Confidence            44   5799999999999765  999999999999999877644333211100            000111122222222


Q ss_pred             Eeeccc-------------eeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCC
Q 013717          200 VRRHKK-------------KLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG  264 (437)
Q Consensus       200 ~~~~~~-------------~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  264 (437)
                      ......             ....+|...|.+++|++  .++++++.||.|++||+.+++.+..+.+|...|.+++|+|++
T Consensus       815 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg  894 (1249)
T 3sfz_A          815 VAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG  894 (1249)
T ss_dssp             EEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             EEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCC
Confidence            221111             12237899999999998  999999999999999999999999999999999999999999


Q ss_pred             e-EEEEeCCCeEEEecCCCCc-----------------------------------------------------------
Q 013717          265 T-VYTGSADRKIRVWAKPFNE-----------------------------------------------------------  284 (437)
Q Consensus       265 ~-l~~~~~dg~v~iwd~~~~~-----------------------------------------------------------  284 (437)
                      . +++++.||.|++||+....                                                           
T Consensus       895 ~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~  974 (1249)
T 3sfz_A          895 SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLE  974 (1249)
T ss_dssp             SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSS
T ss_pred             CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCC
Confidence            8 9999999999999853200                                                           


Q ss_pred             ----------------ccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEE
Q 013717          285 ----------------KRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILC  348 (437)
Q Consensus       285 ----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~  348 (437)
                                      ........+.+|...|.+++|+|+|++|++++.||.|++||+.+++..     ...+|...+.+
T Consensus       975 ~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~-----~~~~~~~~v~~ 1049 (1249)
T 3sfz_A          975 YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-----FLQAHQETVKD 1049 (1249)
T ss_dssp             EEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE-----CCBCCSSCEEE
T ss_pred             EEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE-----EEecCCCcEEE
Confidence                            011223445578889999999999999999999999999999876532     24578899999


Q ss_pred             EEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCC
Q 013717          349 LINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPN  426 (437)
Q Consensus       349 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  426 (437)
                      +.+.++ .+++++.||.|++||+.+++   .+..+.+|.+.|++++|+|++.     +|++++.||.|++||+..+.+.
T Consensus      1050 ~~~~~~~~l~~~~~dg~v~vwd~~~~~---~~~~~~~~~~~v~~~~~s~d~~-----~l~s~s~d~~v~iwd~~~~~~~ 1120 (1249)
T 3sfz_A         1050 FRLLQDSRLLSWSFDGTVKVWNVITGR---IERDFTCHQGTVLSCAISSDAT-----KFSSTSADKTAKIWSFDLLSPL 1120 (1249)
T ss_dssp             EEECSSSEEEEEESSSEEEEEETTTTC---CCEEEECCSSCCCCEEECSSSS-----SCEEECCSSCCCEECSSSSSCS
T ss_pred             EEEcCCCcEEEEECCCcEEEEECCCCc---eeEEEcccCCcEEEEEECCCCC-----EEEEEcCCCcEEEEECCCccee
Confidence            998876 89999999999999999877   7788899999999999999985     6999999999999999887654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-37  Score=285.64  Aligned_cols=287  Identities=15%  Similarity=0.198  Sum_probs=233.1

Q ss_pred             CccCCeEEEEee--CC-EEEEE----------ecC-eEEEEeCCCCcee-eeeccccCCCCcccEEEEEEeCCe--EEEE
Q 013717           96 GHKLPIGCIAVH--HN-FLYAA----------SSH-EINVYDRTGTTWT-SINTFNDNDSSSGSVKSVTFCDGK--IFTA  158 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~-~l~s~----------~~d-~v~vwd~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~--l~s~  158 (437)
                      .+...|.+++|+  ++ +|++|          +.| .|++||+.++... ....    ..|...|.+++|+++.  |+++
T Consensus        10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~   85 (416)
T 2pm9_A           10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS----LQVDSKFNDLDWSHNNKIIAGA   85 (416)
T ss_dssp             CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC----CCCSSCEEEEEECSSSSCEEEE
T ss_pred             hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE----EecCCceEEEEECCCCCeEEEE
Confidence            455678999999  55 89999          788 9999999985322 2222    2588999999999765  9999


Q ss_pred             ecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEE
Q 013717          159 HQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLK  235 (437)
Q Consensus       159 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~  235 (437)
                      +.||.|++||+.+......                          ....+.+|...|.+++|++   .+|++++.||.|+
T Consensus        86 ~~dg~v~vw~~~~~~~~~~--------------------------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~  139 (416)
T 2pm9_A           86 LDNGSLELYSTNEANNAIN--------------------------SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF  139 (416)
T ss_dssp             ESSSCEEEECCSSTTSCCC--------------------------EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred             ccCCeEEEeeccccccccc--------------------------chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence            9999999999987321100                          0112246999999999986   7999999999999


Q ss_pred             EEECCCcc------eEEE---eecccccEEEEEEecC-Ce-EEEEeCCCeEEEecCCCCcccceeeEEeeCc------cc
Q 013717          236 IWRASDLR------CLES---IKAHEDAVNAVAVSAG-GT-VYTGSADRKIRVWAKPFNEKRHALIATLEKH------KS  298 (437)
Q Consensus       236 iwd~~~~~------~~~~---~~~~~~~v~~~~~~~~-~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~------~~  298 (437)
                      +||+.+++      ....   +..|...|.+++|+|+ +. +++++.||.|++||++...    .+..+..+      ..
T Consensus       140 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~  215 (416)
T 2pm9_A          140 IWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK----EVIHLSYTSPNSGIKQ  215 (416)
T ss_dssp             BCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE----EEEEECCCCCSSCCCC
T ss_pred             EEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC----cceEEeccccccccCC
Confidence            99999886      3333   3578899999999998 45 9999999999999987543    45555555      78


Q ss_pred             cEEEEEEccCC-CEEEEEeCCC---cEEEEECCCCccceEEeeeec-ccccceEEEEeeC---CEEEEEeCCCcEEEeeC
Q 013717          299 AVNALALSDDG-TVLFSGACDR---SILVWDREDSANHMVVTGALR-GHGKAILCLINVA---GLLMSGSADRTVRIWQR  370 (437)
Q Consensus       299 ~i~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~---~~l~~~~~dg~i~iwd~  370 (437)
                      .|.+++|+|++ .+|++++.|+   .|++||++++..   ....+. +|...|.++.+++   .+|++++.||.|++||+
T Consensus       216 ~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~  292 (416)
T 2pm9_A          216 QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT---PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP  292 (416)
T ss_dssp             CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS---CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECS
T ss_pred             ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC---CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeC
Confidence            89999999997 6899999998   999999987632   223345 7899999999865   49999999999999999


Q ss_pred             CCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCC
Q 013717          371 GSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPN  426 (437)
Q Consensus       371 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  426 (437)
                      ++++   ++..+.+|...|.+++|+|+++.    +|++++.||.|++|++......
T Consensus       293 ~~~~---~~~~~~~~~~~v~~~~~s~~~~~----~l~s~~~d~~i~iw~~~~~~~~  341 (416)
T 2pm9_A          293 ESAE---QLSQFPARGNWCFKTKFAPEAPD----LFACASFDNKIEVQTLQNLTNT  341 (416)
T ss_dssp             SSCC---EEEEEECSSSCCCCEEECTTCTT----EEEECCSSSEEEEEESCCCCCS
T ss_pred             CCCc---cceeecCCCCceEEEEECCCCCC----EEEEEecCCcEEEEEccCCCCC
Confidence            9876   78889999999999999998754    8999999999999999887643

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.4e-36  Score=281.44  Aligned_cols=274  Identities=16%  Similarity=0.161  Sum_probs=219.0

Q ss_pred             CCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCc
Q 013717           99 LPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTK  173 (437)
Q Consensus        99 ~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~  173 (437)
                      ..+++++|+  +++|++++.| .|++||+.++  .....+   ..| ..+....|+++.  |++++.||.|++||+.+++
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~--~~~~~~---~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  130 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIR--DGSKML---KRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL  130 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSE--ETTTTS---CSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEeccc--ceeeEE---ecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc
Confidence            345578888  9999999999 9999999883  333333   334 334444566543  9999999999999998775


Q ss_pred             ccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecc
Q 013717          174 HHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAH  251 (437)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  251 (437)
                      ....+                              .+|...|.+++|+|  ++|++|+.||.|++||+.+++.+..+.+|
T Consensus       131 ~~~~~------------------------------~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h  180 (420)
T 3vl1_A          131 QREID------------------------------QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH  180 (420)
T ss_dssp             EEEET------------------------------TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC
T ss_pred             eeeec------------------------------ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC
Confidence            43332                              25999999999998  79999999999999999999999999999


Q ss_pred             cccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC---cccc---------------------EEEEEEc
Q 013717          252 EDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK---HKSA---------------------VNALALS  306 (437)
Q Consensus       252 ~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~---------------------i~~~~~~  306 (437)
                      ...|.+++|+|++. |++++.||.|++||++...    .+..+..   +...                     +.+++|+
T Consensus       181 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s  256 (420)
T 3vl1_A          181 RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT----TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG  256 (420)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE----EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS
T ss_pred             CCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc----eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc
Confidence            99999999999998 9999999999999987543    4444443   3334                     4445567


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeec
Q 013717          307 DDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLE  383 (437)
Q Consensus       307 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  383 (437)
                      |++++|++|+.||.|++||+++++....+   ...|...+.++.++++   +|++|+.||.|++||+++++  .++..+.
T Consensus       257 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~  331 (420)
T 3vl1_A          257 TYGKYVIAGHVSGVITVHNVFSKEQTIQL---PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE--CPVGEFL  331 (420)
T ss_dssp             CTTEEEEEEETTSCEEEEETTTCCEEEEE---CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCceeEEc---ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc--Cchhhhh
Confidence            89999999999999999999887643332   3467889999998865   99999999999999999876  2456666


Q ss_pred             C-CCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          384 G-HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       384 ~-h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      + |...|.++.+. ++     .+|++++.||.|++|++..+
T Consensus       332 ~~~~~~v~~~~~~-~~-----~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          332 INEGTPINNVYFA-AG-----ALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             ESTTSCEEEEEEE-TT-----EEEEEETTTEEEEEEEECCT
T ss_pred             ccCCCCceEEEeC-CC-----CEEEEecCCccEEEEeccCC
Confidence            5 67788888655 44     38999999999999999874

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.4e-35  Score=261.89  Aligned_cols=269  Identities=23%  Similarity=0.392  Sum_probs=224.4

Q ss_pred             ccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeec
Q 013717           59 NLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINT  134 (437)
Q Consensus        59 ~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~  134 (437)
                      ..++.+.|....+++++.||.+.+|+..... ....+ +|...|.+++|+  +++|++|+.| .|++||+.++  +.+..
T Consensus        26 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~  102 (312)
T 4ery_A           26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKT  102 (312)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEE
T ss_pred             EEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC--cEEEE
Confidence            3578999999999999999999999987644 44555 999999999999  8999999999 9999999985  34444


Q ss_pred             cccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717          135 FNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG  212 (437)
Q Consensus       135 ~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (437)
                      +   .+|...|.+++|+++.  |++++.|+.|++||+++++....+                              ..|.
T Consensus       103 ~---~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~------------------------------~~~~  149 (312)
T 4ery_A          103 L---KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL------------------------------PAHS  149 (312)
T ss_dssp             E---ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE------------------------------CCCS
T ss_pred             E---cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe------------------------------cCCC
Confidence            4   5799999999999765  999999999999999877543322                              3588


Q ss_pred             CcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee-cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccce
Q 013717          213 DAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHA  288 (437)
Q Consensus       213 ~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~  288 (437)
                      .+|.+++|++  .++++++.||.|++||+++++.+..+. .+...+.+++|+|++. +++++.||.|++||++..    +
T Consensus       150 ~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~  225 (312)
T 4ery_A          150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG----K  225 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT----E
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC----c
Confidence            9999999998  899999999999999999998887764 4567899999999998 999999999999998754    3


Q ss_pred             eeEEeeCccccE---EEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEe--C
Q 013717          289 LIATLEKHKSAV---NALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGS--A  361 (437)
Q Consensus       289 ~~~~~~~~~~~i---~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~--~  361 (437)
                      .+..+.+|...+   ......+++.+|++|+.||.|++||+++++    ....+.+|...|.+++++++  ++++++  .
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~  301 (312)
T 4ery_A          226 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE----IVQKLQGHTDVVISTACHPTENIIASAALEN  301 (312)
T ss_dssp             EEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC----EEEEECCCSSCEEEEEECSSSSEEEEEECTT
T ss_pred             EEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch----hhhhhhccCCcEEEEeecCcCCceEEEEccC
Confidence            566666665543   223334678899999999999999998765    45567889999999998765  888886  6


Q ss_pred             CCcEEEeeCC
Q 013717          362 DRTVRIWQRG  371 (437)
Q Consensus       362 dg~i~iwd~~  371 (437)
                      |+.|++|+.+
T Consensus       302 d~~i~~W~~d  311 (312)
T 4ery_A          302 DKTIKLWKSD  311 (312)
T ss_dssp             TCCEEEEECC
T ss_pred             CccEEEecCC
Confidence            9999999864

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.5e-36  Score=291.17  Aligned_cols=315  Identities=18%  Similarity=0.216  Sum_probs=251.1

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcc---eeeeec-CccCC-eEEEEee----CCEEEEEecC-eEEEEeCCCC--
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLC---INSVQL-GHKLP-IGCIAVH----HNFLYAASSH-EINVYDRTGT--  127 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~---~~~~~~-~h~~~-V~~l~~~----~~~l~s~~~d-~v~vwd~~~~--  127 (437)
                      ..+.+.|....++..+ ++.+.+|+.....   .....+ +|... |.+++|+    +++|++|+.| .|++||+.++  
T Consensus        22 ~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~  100 (615)
T 1pgu_A           22 THLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKE  100 (615)
T ss_dssp             CCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGG
T ss_pred             eEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcc
Confidence            4678999999888777 8899999997541   455556 99999 9999997    4899999999 9999999754  


Q ss_pred             ----ceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC----CeEEEEeCCCCcccccccccCccccceeeecCCCCe
Q 013717          128 ----TWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD----CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSY  197 (437)
Q Consensus       128 ----~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (437)
                          .......+   ..|...|.+++|+++.  |++++.+    +.|++||.  ++...                     
T Consensus       101 ~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~~~~---------------------  154 (615)
T 1pgu_A          101 SNSVEVNVKSEF---QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GNSLG---------------------  154 (615)
T ss_dssp             GTEEEEEEEEEE---ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--CCEEE---------------------
T ss_pred             cccccccccchh---hcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--CCcce---------------------
Confidence                34455554   5689999999999775  8888877    68999983  32221                     


Q ss_pred             eEEeeccceeeecCCCcEEEEEeCC--C-eEEEEECCCcEEEEECCCcceEEEeecccc---cEEEEEEecC-Ce-EEEE
Q 013717          198 VTVRRHKKKLWIEHGDAVTGLAVNN--G-LIYSVSWDKSLKIWRASDLRCLESIKAHED---AVNAVAVSAG-GT-VYTG  269 (437)
Q Consensus       198 ~~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~-~~-l~~~  269 (437)
                               .+.+|...|.+++|++  . .+++++.|+.|++||+.+++.+..+..|..   .|.+++|+|+ +. ++++
T Consensus       155 ---------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  225 (615)
T 1pgu_A          155 ---------EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV  225 (615)
T ss_dssp             ---------ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEE
T ss_pred             ---------eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEE
Confidence                     1236999999999999  3 899999999999999999999999999998   9999999999 88 9999


Q ss_pred             eCCCeEEEecCCCCcccceeeEEe-e---CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccc
Q 013717          270 SADRKIRVWAKPFNEKRHALIATL-E---KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKA  345 (437)
Q Consensus       270 ~~dg~v~iwd~~~~~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  345 (437)
                      +.||.|++||++...    .+..+ .   .|...|.+++|+ ++++|++++.||.|++||+++++....+......+...
T Consensus       226 ~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  300 (615)
T 1pgu_A          226 GSDRKISCFDGKSGE----FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQ  300 (615)
T ss_dssp             ETTCCEEEEETTTCC----EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGC
T ss_pred             eCCCeEEEEECCCCC----EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCc
Confidence            999999999987543    55666 5   799999999999 99999999999999999998876443333221223455


Q ss_pred             eEEEEe-eCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc---------------------------
Q 013717          346 ILCLIN-VAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE---------------------------  397 (437)
Q Consensus       346 i~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~---------------------------  397 (437)
                      +.++.+ +++++++++.||.|++||+.+++   .+..+.+|...|++++| |+                           
T Consensus       301 ~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~---~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~  376 (615)
T 1pgu_A          301 QVGVVATGNGRIISLSLDGTLNFYELGHDE---VLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIV  376 (615)
T ss_dssp             EEEEEEEETTEEEEEETTSCEEEEETTEEE---EEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEE
T ss_pred             eeEEEeCCCCeEEEEECCCCEEEEECCCCc---EEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceE
Confidence            666665 56799999999999999998744   66677777766666666 43                           


Q ss_pred             ------CCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          398 ------EGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       398 ------~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                            +.     +|++++.||.|++|++..++
T Consensus       377 ~~~~~~~~-----~l~~~~~d~~i~~~~~~~~~  404 (615)
T 1pgu_A          377 SLDNSKAQ-----EYSSISWDDTLKVNGITKHE  404 (615)
T ss_dssp             EEECCSTT-----CCEEEETTTEEEETTEEEEE
T ss_pred             EEEECCCc-----EEEEEeCCCCEEEEEcccCc
Confidence                  22     57777777777777777654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1e-36  Score=270.88  Aligned_cols=260  Identities=17%  Similarity=0.243  Sum_probs=200.8

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC----CeEEEEecCCeEEEEe
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD----GKIFTAHQDCKIRVWQ  168 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~~~dg~i~iwd  168 (437)
                      +|.+.|.+++|+  |++||+|+.| +|+|||+.++....+..+   .+|.+.|.+++|++    +.|++|+.|++|++||
T Consensus        11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l---~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A           11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL---RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE---ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE---cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            999999999998  9999999999 999999987644444555   68999999999974    2399999999999999


Q ss_pred             CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEEEECCCcEEEEECCCcce
Q 013717          169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYSVSWDKSLKIWRASDLRC  244 (437)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~  244 (437)
                      +++++....                            ..+.+|...|.+++|+|    .+|++|+.|+.|++||++.+..
T Consensus        88 ~~~~~~~~~----------------------------~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~  139 (316)
T 3bg1_A           88 EENGTWEKS----------------------------HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ  139 (316)
T ss_dssp             CSSSCCCEE----------------------------EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC
T ss_pred             CCCCcceEE----------------------------EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC
Confidence            986532111                            12246999999999987    4899999999999999987632


Q ss_pred             ---EEEeecccccEEEEEEecC-----------------Ce-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEE
Q 013717          245 ---LESIKAHEDAVNAVAVSAG-----------------GT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNAL  303 (437)
Q Consensus       245 ---~~~~~~~~~~v~~~~~~~~-----------------~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~  303 (437)
                         ...+..|...|.+++|+|+                 +. |++|+.|+.|++||++.. .....+..+.+|...|.++
T Consensus       140 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~-~~~~~~~~l~~h~~~V~~v  218 (316)
T 3bg1_A          140 WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED-GQWKEEQKLEAHSDWVRDV  218 (316)
T ss_dssp             EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT-SCEEEEECCBCCSSCEEEE
T ss_pred             cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC-CccceeeecccCCCceEEE
Confidence               2344578889999999997                 34 999999999999998532 2234566788999999999


Q ss_pred             EEccCC----CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCee
Q 013717          304 ALSDDG----TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFG  377 (437)
Q Consensus       304 ~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~  377 (437)
                      +|+|++    ++|++++.||+|++||+++..........+..|...|.+++|+++  +|++++.||.|+||+......+.
T Consensus       219 ~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~  298 (316)
T 3bg1_A          219 AWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWV  298 (316)
T ss_dssp             ECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEE
T ss_pred             EecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEE
Confidence            999986    899999999999999997632110011123457888999998765  99999999999999987555556


Q ss_pred             eeeeecCCCC
Q 013717          378 CLAVLEGHTK  387 (437)
Q Consensus       378 ~~~~~~~h~~  387 (437)
                      ++..+....+
T Consensus       299 ~~~~~~~~~~  308 (316)
T 3bg1_A          299 CISDVNKGQG  308 (316)
T ss_dssp             EEEECC----
T ss_pred             EeeeccCCCC
Confidence            6666654443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=6.7e-36  Score=277.95  Aligned_cols=272  Identities=24%  Similarity=0.373  Sum_probs=228.4

Q ss_pred             eeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCC
Q 013717           63 QTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDS  140 (437)
Q Consensus        63 ~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~  140 (437)
                      .+.+....+++++.||.|.+|+.... .+...+ +|...|.+++|++++|++|+.| .|++||+.++  +.+..+   .+
T Consensus       138 ~~~~d~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~---~~  211 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDNTIKIWDKNTL-ECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG--EMLNTL---IH  211 (435)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSC-CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSC--CEEEEE---CC
T ss_pred             EEEECCCEEEEEeCCCeEEEEeCCCC-eEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCC--cEEEEE---cC
Confidence            44457788999999999999998764 455566 9999999999999999999999 9999999985  344444   57


Q ss_pred             CcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe
Q 013717          141 SSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV  220 (437)
Q Consensus       141 h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  220 (437)
                      |...|.+++|+++.+++|+.||.|++||+.+++.....                           ..+.+|...|.++++
T Consensus       212 h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~---------------------------~~~~~~~~~v~~~~~  264 (435)
T 1p22_A          212 HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR---------------------------RVLVGHRAAVNVVDF  264 (435)
T ss_dssp             CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEE---------------------------EEECCCSSCEEEEEE
T ss_pred             CCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceee---------------------------eEecCCCCcEEEEEe
Confidence            99999999999989999999999999999876543211                           223469999999999


Q ss_pred             CCCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccE
Q 013717          221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAV  300 (437)
Q Consensus       221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i  300 (437)
                      +++++++|+.||.|++||+++++.+..+..|...|.+++++ ...+++|+.||.|++||++..    ..+..+.+|...|
T Consensus       265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~~~v  339 (435)
T 1p22_A          265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECG----ACLRVLEGHEELV  339 (435)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTC----CEEEEECCCSSCE
T ss_pred             CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC-CCEEEEEeCCCeEEEEECCCC----CEEEEEeCCcCcE
Confidence            88999999999999999999999999999999999999995 334999999999999998754    4677888999999


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEECCCCccce-----EEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717          301 NALALSDDGTVLFSGACDRSILVWDREDSANHM-----VVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       301 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~  374 (437)
                      .+++|  ++++|++|+.||.|++||++.+....     .....+.+|...|.++.+++.+|++|+.||.|++||+.+..
T Consensus       340 ~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          340 RCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             EEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC-----
T ss_pred             EEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCC
Confidence            99999  68899999999999999986543110     13445678999999999999999999999999999998755

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.3e-36  Score=267.59  Aligned_cols=249  Identities=18%  Similarity=0.226  Sum_probs=199.4

Q ss_pred             CCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717          139 DSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT  216 (437)
Q Consensus       139 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  216 (437)
                      .+|.+.|.+++|+++.  |++|+.|++|++||+.+++...                            ...+.+|...|.
T Consensus        10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~----------------------------~~~l~gH~~~V~   61 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQIL----------------------------IADLRGHEGPVW   61 (316)
T ss_dssp             ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEE----------------------------EEEEECCSSCEE
T ss_pred             ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEE----------------------------EEEEcCCCccEE
Confidence            5799999999999654  9999999999999997653211                            122357999999


Q ss_pred             EEEeCC----CeEEEEECCCcEEEEECCCc--ceEEEeecccccEEEEEEecC--Ce-EEEEeCCCeEEEecCCCCcccc
Q 013717          217 GLAVNN----GLIYSVSWDKSLKIWRASDL--RCLESIKAHEDAVNAVAVSAG--GT-VYTGSADRKIRVWAKPFNEKRH  287 (437)
Q Consensus       217 ~~~~~~----~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~--~~-l~~~~~dg~v~iwd~~~~~~~~  287 (437)
                      +++|++    ++|++|+.|++|++||++++  +.+..+.+|...|.+++|+|+  +. |++|+.||.|++||++... ..
T Consensus        62 ~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~-~~  140 (316)
T 3bg1_A           62 QVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG-QW  140 (316)
T ss_dssp             EEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS-CE
T ss_pred             EEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC-Cc
Confidence            999963    78999999999999999887  456677789999999999997  66 9999999999999987532 22


Q ss_pred             eeeEEeeCccccEEEEEEccC-----------------CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEE
Q 013717          288 ALIATLEKHKSAVNALALSDD-----------------GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI  350 (437)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~-----------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~  350 (437)
                      .....+.+|...+.+++|+|+                 +++|++|+.|+.|++||++... .......+.+|...|.+++
T Consensus       141 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~l~~h~~~V~~v~  219 (316)
T 3bg1_A          141 EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG-QWKEEQKLEAHSDWVRDVA  219 (316)
T ss_dssp             EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS-CEEEEECCBCCSSCEEEEE
T ss_pred             ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC-ccceeeecccCCCceEEEE
Confidence            233455678889999999997                 4789999999999999997542 2224456788999999999


Q ss_pred             eeC------CEEEEEeCCCcEEEeeCCCCCC-eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717          351 NVA------GLLMSGSADRTVRIWQRGSDGR-FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       351 ~~~------~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                      |++      .+|++++.||+|+||++..... ......+..|...|.+++|+|++.     +|++++.||.|++|+...
T Consensus       220 ~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~-----~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN-----ILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTC-----CEEEEESSSCEEEEEECT
T ss_pred             ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCC-----EEEEEcCCCeEEEEEECC
Confidence            976      4799999999999999986321 112344567899999999999985     699999999999999864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.9e-35  Score=267.44  Aligned_cols=270  Identities=17%  Similarity=0.230  Sum_probs=223.0

Q ss_pred             eccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCC
Q 013717           64 TLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDND  139 (437)
Q Consensus        64 ~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~  139 (437)
                      +.++...+++++.|+.|.+|+........... .|...|.+++|+  +++|++|+.| .|++||+.++  +.+..+   .
T Consensus        99 ~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~---~  173 (401)
T 4aez_A           99 LDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ--TKLRTM---A  173 (401)
T ss_dssp             EEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEE---C
T ss_pred             EeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC--eEEEEe---c
Confidence            44455678889999999999997755444444 699999999999  8999999999 9999999985  344444   5


Q ss_pred             CCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEE
Q 013717          140 SSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA  219 (437)
Q Consensus       140 ~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  219 (437)
                      +|...|.+++|+++.+++++.||.|++||++.....                             ...+.+|...|.+++
T Consensus       174 ~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------------------------~~~~~~~~~~v~~~~  224 (401)
T 4aez_A          174 GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQ-----------------------------IGTLQGHSSEVCGLA  224 (401)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCE-----------------------------EEEEECCSSCEEEEE
T ss_pred             CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcce-----------------------------eeEEcCCCCCeeEEE
Confidence            799999999998888999999999999999854311                             122346999999999


Q ss_pred             eCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEe--CCCeEEEecCCCCcccceeeEEe
Q 013717          220 VNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGS--ADRKIRVWAKPFNEKRHALIATL  293 (437)
Q Consensus       220 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~--~dg~v~iwd~~~~~~~~~~~~~~  293 (437)
                      |++  .+|++|+.||.|++||+++++.+..+..|...|.+++|+|++.  +++++  .|+.|++||+....    .+..+
T Consensus       225 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~----~~~~~  300 (401)
T 4aez_A          225 WRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA----RVNTV  300 (401)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC----EEEEE
T ss_pred             EcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC----EEEEE
Confidence            998  8999999999999999999999999989999999999999876  55554  79999999987543    45555


Q ss_pred             eCccccEEEEEEccCCCEEEEE--eCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEee
Q 013717          294 EKHKSAVNALALSDDGTVLFSG--ACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQ  369 (437)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd  369 (437)
                      . +...|.+++|+|++++|+++  +.||.|++||+.+++..  ....+.+|...|.++.++++  +|++++.||.|++|+
T Consensus       301 ~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~--~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~  377 (401)
T 4aez_A          301 D-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT--KQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR  377 (401)
T ss_dssp             E-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE--EEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred             e-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce--eEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            4 66789999999999999994  48999999999875432  33345688999998888755  999999999999999


Q ss_pred             CCCCC
Q 013717          370 RGSDG  374 (437)
Q Consensus       370 ~~~~~  374 (437)
                      +.+++
T Consensus       378 ~~~~~  382 (401)
T 4aez_A          378 VYDGD  382 (401)
T ss_dssp             CCC--
T ss_pred             CCCCc
Confidence            99876

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.3e-34  Score=260.24  Aligned_cols=275  Identities=23%  Similarity=0.312  Sum_probs=221.9

Q ss_pred             cceeeccc-cccccccCCCceeEEecCCCc----ceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCcee
Q 013717           60 LSLQTLPS-VPSLQKLSPDETINFSSASHL----CINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWT  130 (437)
Q Consensus        60 ~~~~~~~~-~~~~~s~s~dg~i~~~~~~~~----~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~  130 (437)
                      .++.+.|. ...+++++.|++|++|++...    ..+...+ +|...|.+++|+  +++|++|+.| .|++|+.......
T Consensus        42 ~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~  121 (340)
T 4aow_A           42 TQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT  121 (340)
T ss_dssp             EEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             EEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeeccccee
Confidence            57889987 468999999999999998543    3456667 999999999999  8999999999 9999999986443


Q ss_pred             eeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceee
Q 013717          131 SINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLW  208 (437)
Q Consensus       131 ~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (437)
                      ...     ..+...+..+.+.++.  |++++.|+.+++||+.........                             .
T Consensus       122 ~~~-----~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~-----------------------------~  167 (340)
T 4aow_A          122 RRF-----VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ-----------------------------D  167 (340)
T ss_dssp             EEE-----ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC-----------------------------S
T ss_pred             eee-----cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE-----------------------------e
Confidence            333     2477788888888554  999999999999998765432211                             1


Q ss_pred             ecCCCcEEEEEeCC----CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCC
Q 013717          209 IEHGDAVTGLAVNN----GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFN  283 (437)
Q Consensus       209 ~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~  283 (437)
                      .+|...+..+++.+    .++++++.|+.|++||+++++.+..+.+|...|++++|+|++. |++|+.||.|++||++..
T Consensus       168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~  247 (340)
T 4aow_A          168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG  247 (340)
T ss_dssp             SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence            35889999999976    5788999999999999999999999999999999999999998 999999999999998754


Q ss_pred             cccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEe-----eeecccccceEEEEeeCC--EE
Q 013717          284 EKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVT-----GALRGHGKAILCLINVAG--LL  356 (437)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~--~l  356 (437)
                      .    .+..+. +...+.++.|+|++.+ ++++.|+.|++||++.......+.     ....+|...|.+++|+++  +|
T Consensus       248 ~----~~~~~~-~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l  321 (340)
T 4aow_A          248 K----HLYTLD-GGDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTL  321 (340)
T ss_dssp             E----EEEEEE-CSSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEE
T ss_pred             c----eeeeec-CCceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEE
Confidence            3    455555 4568999999998755 456679999999998765333222     223578889999988765  99


Q ss_pred             EEEeCCCcEEEeeCCCCC
Q 013717          357 MSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       357 ~~~~~dg~i~iwd~~~~~  374 (437)
                      ++|+.||.|+|||+++|.
T Consensus       322 ~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          322 FAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEETTSCEEEEEEEC--
T ss_pred             EEEeCCCEEEEEeCCCcC
Confidence            999999999999999875

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.4e-35  Score=262.37  Aligned_cols=281  Identities=17%  Similarity=0.225  Sum_probs=229.7

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCC
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLT  170 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~  170 (437)
                      -|.++|.+++|+  |++++++..+ .+.+|+.... ......    .+|...|.+++|+++.  +++++ ||.|++||+.
T Consensus         7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~   80 (337)
T 1gxr_A            7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH-ARQINT----LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDIS   80 (337)
T ss_dssp             EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSE-EEEEEE----ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETT
T ss_pred             ccCCceeEEEECCCCCEEEeecCCCcEeccccCCc-ccccee----ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECC
Confidence            456789999999  8999888877 7767765542 223333    2699999999999776  66666 9999999998


Q ss_pred             CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc--eEE
Q 013717          171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR--CLE  246 (437)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~--~~~  246 (437)
                      +++.......+.                         ..+|...|.+++|++  +++++++.||.|++||+.+++  ...
T Consensus        81 ~~~~~~~~~~~~-------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  135 (337)
T 1gxr_A           81 HPGNKSPVSQLD-------------------------CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA  135 (337)
T ss_dssp             STTCCSCSEEEE-------------------------CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE
T ss_pred             CCCceeeeeccc-------------------------ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee
Confidence            765433322110                         015889999999998  789999999999999999887  566


Q ss_pred             EeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717          247 SIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD  325 (437)
Q Consensus       247 ~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (437)
                      .+..|...|.+++|+|++. +++++.||.|++||++..    +.+..+..|...|.+++|+|++++|++++.||.|++||
T Consensus       136 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d  211 (337)
T 1gxr_A          136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD  211 (337)
T ss_dssp             EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC----ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEE
Confidence            6778899999999999998 999999999999998754    46777888999999999999999999999999999999


Q ss_pred             CCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCce
Q 013717          326 REDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGV  403 (437)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~  403 (437)
                      +++++.....     .+...+.++.++++  +|++++.||.|++||+...+    ...+..|...|.+++|+|++.    
T Consensus       212 ~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~----  278 (337)
T 1gxr_A          212 LREGRQLQQH-----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----KYQLHLHESCVLSLKFAYCGK----  278 (337)
T ss_dssp             TTTTEEEEEE-----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----EEEECCCSSCEEEEEECTTSS----
T ss_pred             CCCCceEeee-----cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC----eEEEcCCccceeEEEECCCCC----
Confidence            9877533322     35677888887654  99999999999999999865    346788999999999999884    


Q ss_pred             EEEEEecCCCcEEEEeeccCCC
Q 013717          404 VSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       404 ~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                       +|++++.||.|++|++..++.
T Consensus       279 -~l~~~~~dg~i~~~~~~~~~~  299 (337)
T 1gxr_A          279 -WFVSTGKDNLLNAWRTPYGAS  299 (337)
T ss_dssp             -EEEEEETTSEEEEEETTTCCE
T ss_pred             -EEEEecCCCcEEEEECCCCeE
Confidence             799999999999999988764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.8e-36  Score=274.45  Aligned_cols=281  Identities=12%  Similarity=0.129  Sum_probs=215.7

Q ss_pred             cccceeeccccccccccCCCceeEEecCCCcc-eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCc-eee
Q 013717           58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLC-INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTT-WTS  131 (437)
Q Consensus        58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~-~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~-~~~  131 (437)
                      +..++.+.|....+++++.|+.|.+|+..... .+...+ +|...|.+++|+  +++|++++.| .|++||+.++. ...
T Consensus        13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~   92 (377)
T 3dwl_C           13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ   92 (377)
T ss_dssp             CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCC
T ss_pred             cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceee
Confidence            44678999999999999999999999997654 667777 999999999999  8999999999 99999999864 223


Q ss_pred             eeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717          132 INTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI  209 (437)
Q Consensus       132 ~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (437)
                      ...+   .+|...|.+++|+++.  |++++.|+.|++||+++++......                           .+.
T Consensus        93 ~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---------------------------~~~  142 (377)
T 3dwl_C           93 TLVL---LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSK---------------------------HLK  142 (377)
T ss_dssp             EEEC---CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCE---------------------------EEC
T ss_pred             eeEe---cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeee---------------------------Eee
Confidence            3333   5799999999999765  9999999999999998775322222                           122


Q ss_pred             c-CCCcEEEEEeCC--CeEEEEECCCcEEEEECC------------------CcceEEEeecccccEEEEEEecCCe-EE
Q 013717          210 E-HGDAVTGLAVNN--GLIYSVSWDKSLKIWRAS------------------DLRCLESIKAHEDAVNAVAVSAGGT-VY  267 (437)
Q Consensus       210 ~-~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~-l~  267 (437)
                      + |...|.+++|+|  .+|++++.||.|++||+.                  .++++..+ .|...|.+++|+|++. |+
T Consensus       143 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~  221 (377)
T 3dwl_C          143 RPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALA  221 (377)
T ss_dssp             SSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEE
T ss_pred             cccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEE
Confidence            4 899999999998  799999999999999985                  35566666 8999999999999999 99


Q ss_pred             EEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccc---------------
Q 013717          268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANH---------------  332 (437)
Q Consensus       268 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---------------  332 (437)
                      +++.||.|++||+.........+..+..|...|.+++|+|++++|++++.++.+ +|+.......               
T Consensus       222 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  300 (377)
T 3dwl_C          222 YAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFT  300 (377)
T ss_dssp             EEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBS
T ss_pred             EEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccc
Confidence            999999999999987654444467788899999999999999999998766655 7766521100               


Q ss_pred             ---------------------eEE------------eeeecccccceEEEEeeCC------EEEEEeCCCcEEEeeC
Q 013717          333 ---------------------MVV------------TGALRGHGKAILCLINVAG------LLMSGSADRTVRIWQR  370 (437)
Q Consensus       333 ---------------------~~~------------~~~~~~~~~~i~~~~~~~~------~l~~~~~dg~i~iwd~  370 (437)
                                           ..+            ......|...|.++.+.+.      .|++|+.||.|+|||+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          301 HTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             SSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                                 000            0011238889999886432      6999999999999985

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.2e-34  Score=291.05  Aligned_cols=285  Identities=18%  Similarity=0.291  Sum_probs=240.2

Q ss_pred             eeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeE
Q 013717           91 NSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKI  164 (437)
Q Consensus        91 ~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i  164 (437)
                      ..+.+ +|.+.|.+++|+  +++|++|+.+ .|+|||+.++  .....+   .+|...|.+++|+++.  |++++.||.|
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~--~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i   79 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ--VEVRSI---QVTETPVRAGKFIARKNWIIVGSDDFRI   79 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEE---ECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC--ceEEEE---ecCCCcEEEEEEeCCCCEEEEEeCCCeE
Confidence            34556 999999999999  8999999999 9999999885  344444   4699999999999765  9999999999


Q ss_pred             EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc
Q 013717          165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL  242 (437)
Q Consensus       165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~  242 (437)
                      ++||+.+++....+                              .+|...|.+++|+|  .++++++.||.|++||+.++
T Consensus        80 ~vw~~~~~~~~~~~------------------------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~  129 (814)
T 3mkq_A           80 RVFNYNTGEKVVDF------------------------------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN  129 (814)
T ss_dssp             EEEETTTCCEEEEE------------------------------ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT
T ss_pred             EEEECCCCcEEEEE------------------------------ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC
Confidence            99999987644332                              36999999999998  78999999999999999887


Q ss_pred             -ceEEEeecccccEEEEEEec-CCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC-ccccEEEEEEcc--CCCEEEEEe
Q 013717          243 -RCLESIKAHEDAVNAVAVSA-GGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK-HKSAVNALALSD--DGTVLFSGA  316 (437)
Q Consensus       243 -~~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~--~~~~l~~~~  316 (437)
                       .....+..|...|.+++|+| ++. +++++.||.|++||+....    ....+.. +...+.+++|+|  ++.+|++++
T Consensus       130 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  205 (814)
T 3mkq_A          130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST----PNFTLTTGQERGVNYVDYYPLPDKPYMITAS  205 (814)
T ss_dssp             SEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS----CSEEEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred             ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----ceeEEecCCCCCEEEEEEEECCCCCEEEEEe
Confidence             66778888999999999999 776 9999999999999986544    2333333 448899999999  999999999


Q ss_pred             CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEE
Q 013717          317 CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTA  394 (437)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~  394 (437)
                      .||.|++||+++++    ....+.+|...+.++.++++  +|++++.||.|++||+.+++   .+..+..|...|.+++|
T Consensus       206 ~dg~i~~~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~---~~~~~~~~~~~v~~~~~  278 (814)
T 3mkq_A          206 DDLTIKIWDYQTKS----CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK---VEKTLNVGLERSWCIAT  278 (814)
T ss_dssp             TTSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS---EEEEECCSSSSEEEEEE
T ss_pred             CCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---EEEEeecCCCcEEEEEE
Confidence            99999999998765    34456678889998888765  99999999999999999876   78888999999999999


Q ss_pred             EccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          395 VTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       395 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      +|++..    ++++++.|+.+.+|++..+.+
T Consensus       279 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~  305 (814)
T 3mkq_A          279 HPTGRK----NYIASGFDNGFTVLSLGNDEP  305 (814)
T ss_dssp             CTTCGG----GEEEEEETTEEEEEECSCCSC
T ss_pred             ccCCCc----eEEEEEeCCCEEEEEcCCCCc
Confidence            999853    445566678899999876543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.4e-34  Score=263.50  Aligned_cols=283  Identities=13%  Similarity=0.101  Sum_probs=231.7

Q ss_pred             cccceeeccccccccccCCCceeEEecCCCcc-eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeee
Q 013717           58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLC-INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSI  132 (437)
Q Consensus        58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~-~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~  132 (437)
                      +..++.+.|....+++.+.|+.|.+|+..... .....+ +|...|.+++|+  +++|++++.| .|++||+.+++....
T Consensus        10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   89 (372)
T 1k8k_C           10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT   89 (372)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee
Confidence            34578899999999999999999999997653 366666 999999999999  8999999999 999999988654444


Q ss_pred             eccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeec
Q 013717          133 NTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIE  210 (437)
Q Consensus       133 ~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (437)
                      ..+   ..|...|.+++|+++.  |++++.||.|++||++.++.......                          ....
T Consensus        90 ~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~--------------------------~~~~  140 (372)
T 1k8k_C           90 LVI---LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH--------------------------IKKP  140 (372)
T ss_dssp             EEC---CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE--------------------------ECTT
T ss_pred             EEe---ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee--------------------------eecc
Confidence            433   4689999999999765  99999999999999987653211111                          1135


Q ss_pred             CCCcEEEEEeCC--CeEEEEECCCcEEEEEC------------------CCcceEEEeecccccEEEEEEecCCe-EEEE
Q 013717          211 HGDAVTGLAVNN--GLIYSVSWDKSLKIWRA------------------SDLRCLESIKAHEDAVNAVAVSAGGT-VYTG  269 (437)
Q Consensus       211 ~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~  269 (437)
                      |...|.+++|++  .++++++.||.|++||+                  ..++.+..+..|...|.+++|+|++. |+++
T Consensus       141 ~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  220 (372)
T 1k8k_C          141 IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV  220 (372)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE
T ss_pred             cCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEE
Confidence            889999999998  79999999999999995                  46788888888999999999999998 9999


Q ss_pred             eCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCC--Cccc---------------
Q 013717          270 SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRED--SANH---------------  332 (437)
Q Consensus       270 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~---------------  332 (437)
                      +.||.|++||++..    +.+..+..|...|.+++|+|++++|++| .|+.|++|+++.  +...               
T Consensus       221 ~~d~~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (372)
T 1k8k_C          221 SHDSTVCLADADKK----MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG  295 (372)
T ss_dssp             ETTTEEEEEEGGGT----TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred             eCCCEEEEEECCCC----ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence            99999999988654    3677788899999999999999988887 899999999987  3100               


Q ss_pred             -------------eEEe------eee-cccccceEEEEee---C---CEEEEEeCCCcEEEeeCCCCC
Q 013717          333 -------------MVVT------GAL-RGHGKAILCLINV---A---GLLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       333 -------------~~~~------~~~-~~~~~~i~~~~~~---~---~~l~~~~~dg~i~iwd~~~~~  374 (437)
                                   ....      ..+ .+|...|.++++.   +   .+|++|+.||.|++||+.+++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          296 LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             -CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             cchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence                         0000      222 4899999999744   3   699999999999999987644

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=7.4e-34  Score=285.20  Aligned_cols=316  Identities=16%  Similarity=0.228  Sum_probs=255.2

Q ss_pred             cccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeee
Q 013717           58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSIN  133 (437)
Q Consensus        58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~  133 (437)
                      ....+.++|..+.+++++.||.|.+|+.... .....+ +|..+|.+++|+  +++|++|+.| .|++||+.+++  ...
T Consensus        15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~--~~~   91 (814)
T 3mkq_A           15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ-VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE--KVV   91 (814)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC--EEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEECCCC-ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--EEE
Confidence            4467899999999999999999999998764 455566 999999999999  8999999999 99999999853  344


Q ss_pred             ccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717          134 TFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH  211 (437)
Q Consensus       134 ~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (437)
                      .+   .+|...|.+++|+++.  |++++.||.|++||+.++...                             ...+.+|
T Consensus        92 ~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~-----------------------------~~~~~~~  139 (814)
T 3mkq_A           92 DF---EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL-----------------------------EQTFEGH  139 (814)
T ss_dssp             EE---ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEE-----------------------------EEEEECC
T ss_pred             EE---ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceE-----------------------------EEEEcCC
Confidence            44   4699999999999775  999999999999999865211                             1223468


Q ss_pred             CCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeeccc-ccEEEEEEec--CCe-EEEEeCCCeEEEecCCCCc
Q 013717          212 GDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHE-DAVNAVAVSA--GGT-VYTGSADRKIRVWAKPFNE  284 (437)
Q Consensus       212 ~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~--~~~-l~~~~~dg~v~iwd~~~~~  284 (437)
                      ...|.+++|+|   ..+++++.||.|++||+.+++....+..+. ..+.+++|+|  ++. +++++.||.|++||+... 
T Consensus       140 ~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-  218 (814)
T 3mkq_A          140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-  218 (814)
T ss_dssp             SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-
T ss_pred             CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-
Confidence            99999999987   689999999999999999888877776544 8899999999  887 999999999999988654 


Q ss_pred             ccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeC
Q 013717          285 KRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSA  361 (437)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~  361 (437)
                         ..+..+.+|...|.+++|+|++++|++++.||.|++||+.+++    ....+..|...+.+++++++   .+++++.
T Consensus       219 ---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  291 (814)
T 3mkq_A          219 ---SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK----VEKTLNVGLERSWCIATHPTGRKNYIASGF  291 (814)
T ss_dssp             ---EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS----EEEEECCSSSSEEEEEECTTCGGGEEEEEE
T ss_pred             ---cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----EEEEeecCCCcEEEEEEccCCCceEEEEEe
Confidence               4677788899999999999999999999999999999998775    44456677889999998866   2344555


Q ss_pred             CCcEEEeeCCCCCCee----------------------------------------eeeeecCCCCCeeEEEEEccCCCC
Q 013717          362 DRTVRIWQRGSDGRFG----------------------------------------CLAVLEGHTKPVKSLTAVTEEGQN  401 (437)
Q Consensus       362 dg~i~iwd~~~~~~~~----------------------------------------~~~~~~~h~~~v~~l~~~~~~~~~  401 (437)
                      ++.+.+|++.......                                        ....+..+...+.+++|+|++.  
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~--  369 (814)
T 3mkq_A          292 DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGR--  369 (814)
T ss_dssp             TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSS--
T ss_pred             CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCC--
Confidence            6678888876532100                                        0112234556789999999874  


Q ss_pred             ceEEEEEecCCCcEEEEeecc
Q 013717          402 GVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       402 ~~~~l~s~~~dg~i~iw~~~~  422 (437)
                         ++++++ ||.+.+|++..
T Consensus       370 ---~la~~~-~~~~~i~~~~~  386 (814)
T 3mkq_A          370 ---FVTVVG-DGEYVIYTALA  386 (814)
T ss_dssp             ---EEEEEE-TTEEEEEETTT
T ss_pred             ---EEEEec-CCEEEEEECcc
Confidence               677776 88899998654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.6e-34  Score=282.85  Aligned_cols=274  Identities=24%  Similarity=0.339  Sum_probs=216.9

Q ss_pred             cceeecccc-ccccccCCCceeEEecCCCc----ceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCcee
Q 013717           60 LSLQTLPSV-PSLQKLSPDETINFSSASHL----CINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWT  130 (437)
Q Consensus        60 ~~~~~~~~~-~~~~s~s~dg~i~~~~~~~~----~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~  130 (437)
                      .++.+.|.. ..+++++.|++|++|+....    ......+ +|...|.+++|+  +++|++|+.| .|+|||+.++  .
T Consensus       386 ~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~--~  463 (694)
T 3dm0_A          386 TAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG--V  463 (694)
T ss_dssp             EEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--E
T ss_pred             EEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC--c
Confidence            456666654 57999999999999998643    2345566 999999999999  8999999999 9999999985  3


Q ss_pred             eeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceee
Q 013717          131 SINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLW  208 (437)
Q Consensus       131 ~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (437)
                      ....+   .+|...|.+++|+++.  |++++.|++|++||.............                           
T Consensus       464 ~~~~~---~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~---------------------------  513 (694)
T 3dm0_A          464 STRRF---VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGG---------------------------  513 (694)
T ss_dssp             EEEEE---ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSST---------------------------
T ss_pred             ceeEE---eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCC---------------------------
Confidence            34444   5799999999999765  999999999999998654322111110                           


Q ss_pred             ecCCCcEEEEEeCC----CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCC
Q 013717          209 IEHGDAVTGLAVNN----GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFN  283 (437)
Q Consensus       209 ~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~  283 (437)
                      .+|...|.+++|++    ..+++++.|+.|++||++++++...+.+|...|++++|+|++. |++|+.||.|++||++..
T Consensus       514 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~  593 (694)
T 3dm0_A          514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG  593 (694)
T ss_dssp             TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT
T ss_pred             CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            25889999999988    4799999999999999999999999999999999999999998 999999999999998765


Q ss_pred             cccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeee---------------cccccceEE
Q 013717          284 EKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGAL---------------RGHGKAILC  348 (437)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------~~~~~~i~~  348 (437)
                      .    .+..+. +...|.+++|+|++.+|++++ ++.|++||+++++....+....               ..+...+.+
T Consensus       594 ~----~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  667 (694)
T 3dm0_A          594 K----KLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTS  667 (694)
T ss_dssp             E----EEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEE
T ss_pred             c----eEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeee
Confidence            3    344444 456899999999998887775 5569999998875433332111               011123566


Q ss_pred             EEeeC--CEEEEEeCCCcEEEeeCC
Q 013717          349 LINVA--GLLMSGSADRTVRIWQRG  371 (437)
Q Consensus       349 ~~~~~--~~l~~~~~dg~i~iwd~~  371 (437)
                      +.|++  .+|++|+.||.|+||++.
T Consensus       668 l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          668 LNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEEcCCCCEEEEEcCCCeEEEEecc
Confidence            77765  499999999999999986

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.2e-34  Score=259.14  Aligned_cols=277  Identities=12%  Similarity=0.126  Sum_probs=224.8

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCce-eeeeccccCCCCcccEEEEEEeC--C-eEEEEecCCeEEEEe
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTW-TSINTFNDNDSSSGSVKSVTFCD--G-KIFTAHQDCKIRVWQ  168 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~~~dg~i~iwd  168 (437)
                      +|.+.|.+++|+  +++|++++.| .|++||+..+.. .....+   .+|...|.+++|++  . .|++++.||.|++||
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd   85 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS---LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE---EECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee---eecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence            899999999999  8999999999 999999988641 112222   36899999999984  4 599999999999999


Q ss_pred             C-CCCcccccccccCccccceeeecCCCCeeEEeeccceeeec--CCCcEEEEEeCC-CeEEEEECCCcEEEEECCC---
Q 013717          169 L-TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIE--HGDAVTGLAVNN-GLIYSVSWDKSLKIWRASD---  241 (437)
Q Consensus       169 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~---  241 (437)
                      + .+++..                               .+.+  |...|.+++|++ +++++++.|+.|++||+++   
T Consensus        86 ~~~~~~~~-------------------------------~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~  134 (342)
T 1yfq_A           86 LIGSPSFQ-------------------------------ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD  134 (342)
T ss_dssp             SSSSSSEE-------------------------------ECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT
T ss_pred             eccCCceE-------------------------------eccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc
Confidence            9 766421                               1235  889999999997 9999999999999999987   


Q ss_pred             ------cceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCC-CcccceeeEEeeCccccEEEEEEcc-CCCEEE
Q 013717          242 ------LRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPF-NEKRHALIATLEKHKSAVNALALSD-DGTVLF  313 (437)
Q Consensus       242 ------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~  313 (437)
                            ++++..+. +...|.+++|+|++ +++++.|+.|++||++. ...  ........+...+.+++|+| ++++|+
T Consensus       135 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~~l~  210 (342)
T 1yfq_A          135 GVIAVKNLNSNNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDD--NGTIEESGLKYQIRDVALLPKEQEGYA  210 (342)
T ss_dssp             BCEEEEESCSSSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTC--CCEEEECSCSSCEEEEEECSGGGCEEE
T ss_pred             ccccccCCeeeEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccc--cceeeecCCCCceeEEEECCCCCCEEE
Confidence                  77666666 88899999999888 99999999999999975 322  12334456788999999999 999999


Q ss_pred             EEeCCCcEEEEECCCC--ccceEEeeeeccc---------ccceEEEEeeC--CEEEEEeCCCcEEEeeCCCCCCeeeee
Q 013717          314 SGACDRSILVWDREDS--ANHMVVTGALRGH---------GKAILCLINVA--GLLMSGSADRTVRIWQRGSDGRFGCLA  380 (437)
Q Consensus       314 ~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~---------~~~i~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~  380 (437)
                      +++.||.|++|+++..  .........+..|         ...|.++.+++  .+|++++.||.|++||+.+++   ++.
T Consensus       211 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---~~~  287 (342)
T 1yfq_A          211 CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK---KIK  287 (342)
T ss_dssp             EEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE---EEE
T ss_pred             EEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh---Hhh
Confidence            9999999999999876  1001122223444         34898988875  499999999999999999866   788


Q ss_pred             eecCC-CCCeeEEEEEccCCCCceEEEEEecCCCc-EEEEee
Q 013717          381 VLEGH-TKPVKSLTAVTEEGQNGVVSVFSGSLDGE-IRAWQV  420 (437)
Q Consensus       381 ~~~~h-~~~v~~l~~~~~~~~~~~~~l~s~~~dg~-i~iw~~  420 (437)
                      .+.+| ..+|.+++  |++.     +|++++.||. .+.|..
T Consensus       288 ~~~~~h~~~v~~~~--~~~~-----~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          288 NFAKFNEDSVVKIA--CSDN-----ILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             ECCCCSSSEEEEEE--ECSS-----EEEEEEECTHHHHCSSS
T ss_pred             hhhcccCCCceEec--CCCC-----eEEEEecCCcccccccc
Confidence            89998 99999998  7664     8999999999 666654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=6.6e-35  Score=262.92  Aligned_cols=292  Identities=14%  Similarity=0.168  Sum_probs=209.9

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCce--eeeeccccCCCCcccEEEEEEeC---Ce-EEEEecCCeEEE
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTW--TSINTFNDNDSSSGSVKSVTFCD---GK-IFTAHQDCKIRV  166 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~--~~~~~~~~~~~h~~~v~~l~~~~---~~-l~s~~~dg~i~i  166 (437)
                      +|.+.|++++|+  +++|++|+.| .|++||+.++..  +....+   .+|...|.+++|++   +. |++++.||.|++
T Consensus         9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A            9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW---RAHDSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEE---ECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceeccee---ccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            999999999999  8999999999 999999986422  334444   57999999999986   33 999999999999


Q ss_pred             EeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEEEECCCcEEEEECCCc
Q 013717          167 WQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYSVSWDKSLKIWRASDL  242 (437)
Q Consensus       167 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~  242 (437)
                      ||+++++.......                     ......+..|...|.+++|++    .++++++.||.|++||++++
T Consensus        86 wd~~~~~~~~~~~~---------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~  144 (351)
T 3f3f_A           86 WEEDPDQEECSGRR---------------------WNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEP  144 (351)
T ss_dssp             EEECTTSCTTSSCS---------------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSST
T ss_pred             EecCCCcccccccC---------------------cceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCCh
Confidence            99987643211100                     001123346899999999987    58999999999999999887


Q ss_pred             ceEEEee-------------cccccEEEEEEecC---Ce-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEE
Q 013717          243 RCLESIK-------------AHEDAVNAVAVSAG---GT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALAL  305 (437)
Q Consensus       243 ~~~~~~~-------------~~~~~v~~~~~~~~---~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~  305 (437)
                      +.+..+.             .+...+.+++|+|+   +. +++++.++.+.+|+....  ....+..+.+|...|.+++|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~i~~~~~  222 (351)
T 3f3f_A          145 SDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG--KLHVAAKLPGHKSLIRSISW  222 (351)
T ss_dssp             TCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS--CEEEEEECCCCCSCEEEEEE
T ss_pred             HHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC--ceeeeeecCCCCcceeEEEE
Confidence            6544332             57788999999997   66 999999999988876433  23346677889999999999


Q ss_pred             ccCC----CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEE----EeCCCcEEEeeCCCCCC
Q 013717          306 SDDG----TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMS----GSADRTVRIWQRGSDGR  375 (437)
Q Consensus       306 ~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~----~~~dg~i~iwd~~~~~~  375 (437)
                      +|++    ++|++++.||.|++||++.+........    +..........  ...+..    +.....+.+|+...   
T Consensus       223 ~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  295 (351)
T 3f3f_A          223 APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEE----SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ---  295 (351)
T ss_dssp             CCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------------------CCSEE---
T ss_pred             CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCC----cccceeccCCCcccccccccccccccceeeeeccccc---
Confidence            9998    8999999999999999986543322211    11111112111  112222    23344455555443   


Q ss_pred             eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          376 FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       376 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      ..++..+.+|...|++++|+|++.     +|++++.||.|++|+++.++.
T Consensus       296 ~~~~~~~~~h~~~v~~~~~s~~~~-----~l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          296 VELLSEHDDHNGEVWSVSWNLTGT-----ILSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             EEEEEEECTTSSCEEEEEECSSSC-----CEEEEETTSCEEEEEECTTSC
T ss_pred             ccEEEEEecccccEEEEEEcCCCC-----EEEEecCCCcEEEEecCcCcc
Confidence            358888999999999999999884     799999999999999998753

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-34  Score=253.01  Aligned_cols=268  Identities=21%  Similarity=0.297  Sum_probs=223.2

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCc-eeeeecc
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTT-WTSINTF  135 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~-~~~~~~~  135 (437)
                      ..+.+ |....+++++.||.|++|+............|...|.+++|+  +++|++++.| .|++|++.... .+....+
T Consensus        22 ~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~  100 (313)
T 3odt_A           22 RDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTL  100 (313)
T ss_dssp             EEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEE
T ss_pred             EEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccch
Confidence            46677 888899999999999999996644443333999999999999  8999999999 99999998732 1223333


Q ss_pred             ccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcE
Q 013717          136 NDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV  215 (437)
Q Consensus       136 ~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  215 (437)
                         .+|...|.++.|.++.+++++.||.|++||  .++..                              ..+..|...+
T Consensus       101 ---~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~------------------------------~~~~~~~~~v  145 (313)
T 3odt_A          101 ---IGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLV------------------------------YNLQAHNASV  145 (313)
T ss_dssp             ---CCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEE------------------------------EEEECCSSCE
T ss_pred             ---hhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEE------------------------------EecccCCCce
Confidence               679999999999888899999999999999  22211                              1224588999


Q ss_pred             EEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeec-ccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeE
Q 013717          216 TGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKA-HEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIA  291 (437)
Q Consensus       216 ~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  291 (437)
                      .++.+.+   +++++++.||.|++||  ..+....+.. +...|.+++|+|++.+++++.||.|++||++..    +.+.
T Consensus       146 ~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~----~~~~  219 (313)
T 3odt_A          146 WDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG----DVLR  219 (313)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTC----CEEE
T ss_pred             eEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCch----hhhh
Confidence            9999854   8999999999999999  4556667765 899999999999999999999999999998754    4677


Q ss_pred             EeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeC
Q 013717          292 TLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQR  370 (437)
Q Consensus       292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~  370 (437)
                      .+..|...|.+++|+|++ .|++++.||.|++||+++++    ....+..|...+.++.++++ .+++++.||.|++||+
T Consensus       220 ~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~  294 (313)
T 3odt_A          220 TYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGS----LKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQ  294 (313)
T ss_dssp             EEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCC----EEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEES
T ss_pred             hhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCc----eeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeC
Confidence            788899999999999999 68899999999999998876    44445678889999998866 5778999999999999


Q ss_pred             CCCC
Q 013717          371 GSDG  374 (437)
Q Consensus       371 ~~~~  374 (437)
                      ++++
T Consensus       295 ~~~~  298 (313)
T 3odt_A          295 EKSR  298 (313)
T ss_dssp             CGGG
T ss_pred             CCCc
Confidence            8755

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=270.05  Aligned_cols=306  Identities=13%  Similarity=0.239  Sum_probs=217.8

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCce---------eeeeccccCCCCc------------ccEEEEEEe
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTW---------TSINTFNDNDSSS------------GSVKSVTFC  151 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~---------~~~~~~~~~~~h~------------~~v~~l~~~  151 (437)
                      .|.+.|.+++|+  +++||+|+.| .|+|||+.++..         +....+   .+|.            ..|.+++|+
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~---~~h~~~~~~~~~~~~~~~V~~l~~~  102 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF---QSHEPEFDYLKSLEIEEKINKIRWL  102 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE---ECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc---ccccccccccccccccCceEEEEEc
Confidence            678999999999  8999999999 999999987531         123344   5687            889999999


Q ss_pred             CC----eEEEEecCCeEEEEeCCCCcccccccccCccccce----------eeecCCCCeeEEeeccc-eeeecCCCcEE
Q 013717          152 DG----KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRL----------LRFMLPNSYVTVRRHKK-KLWIEHGDAVT  216 (437)
Q Consensus       152 ~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~-~~~~~~~~~v~  216 (437)
                      ++    .|++++.|++|++||+.+++.......+.......          .....+.. ..+..... ....+|...|.
T Consensus       103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~  181 (447)
T 3dw8_B          103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMD-LMVEASPRRIFANAHTYHIN  181 (447)
T ss_dssp             CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEE-EEEEEEEEEEECSCCSSCCC
T ss_pred             CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchh-eeeeccceEEeccCCCcceE
Confidence            65    39999999999999998654322111111100000          00000011 11111222 23367999999


Q ss_pred             EEEeCC--CeEEEEECCCcEEEEECCC-cceEEE-------eecccccEEEEEEecCC-e-EEEEeCCCeEEEecCCCCc
Q 013717          217 GLAVNN--GLIYSVSWDKSLKIWRASD-LRCLES-------IKAHEDAVNAVAVSAGG-T-VYTGSADRKIRVWAKPFNE  284 (437)
Q Consensus       217 ~~~~~~--~~l~~~~~dg~i~iwd~~~-~~~~~~-------~~~~~~~v~~~~~~~~~-~-l~~~~~dg~v~iwd~~~~~  284 (437)
                      +++|++  .+|++| .||.|++||+++ ++.+..       +..|...|.+++|+|++ . |++|+.||.|++||++...
T Consensus       182 ~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  260 (447)
T 3dw8_B          182 SISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA  260 (447)
T ss_dssp             EEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred             EEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence            999998  788888 899999999984 444442       45788999999999998 5 9999999999999998655


Q ss_pred             ccceeeEEeeCccc------------cEEEEEEccCCCEEEEEeCCCcEEEEECCC-CccceEEeeeecccccc------
Q 013717          285 KRHALIATLEKHKS------------AVNALALSDDGTVLFSGACDRSILVWDRED-SANHMVVTGALRGHGKA------  345 (437)
Q Consensus       285 ~~~~~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~------  345 (437)
                      ........+..|..            .|.+++|+|+|++|++++. +.|++||++. ++..    ..+.+|...      
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~----~~~~~~~~~~~~l~~  335 (447)
T 3dw8_B          261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV----ETYQVHEYLRSKLCS  335 (447)
T ss_dssp             SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS----CCEESCGGGTTTHHH
T ss_pred             cccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc----ceeeccccccccccc
Confidence            32223566666665            8999999999999999998 9999999986 4432    233444321      


Q ss_pred             ---------e--EEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeec-------------------------------
Q 013717          346 ---------I--LCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLE-------------------------------  383 (437)
Q Consensus       346 ---------i--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------------  383 (437)
                               +  .++.+++.+|++|+.||.|++||+.+++.   + .+.                               
T Consensus       336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (447)
T 3dw8_B          336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD---I-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVD  411 (447)
T ss_dssp             HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE---E-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGG
T ss_pred             cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc---e-eeeecccccccccccCCccccccCCccccccccc
Confidence                     1  34455566999999999999999998762   1 222                               


Q ss_pred             --CCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          384 --GHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       384 --~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                        .+...|..++|+|+++     +|++++.++ +++|.-+
T Consensus       412 ~~~~~~~i~~~~~~p~~~-----~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          412 SLDFNKKILHTAWHPKEN-----IIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             GCCTTSCCCEEEECSSSS-----EEEEECSSC-EEEEECC
T ss_pred             ccccCCceeEEEECCCCC-----EEEEEecce-eeeeccc
Confidence              2346789999999985     688887765 8888643

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.7e-34  Score=258.80  Aligned_cols=253  Identities=20%  Similarity=0.270  Sum_probs=208.4

Q ss_pred             eeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC----eEEEEecCC
Q 013717           91 NSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG----KIFTAHQDC  162 (437)
Q Consensus        91 ~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~l~s~~~dg  162 (437)
                      ++..+ +|.+.|.+++|+  +++|++|+.| .|+|||+..+..+....+   .+|...|.+++|+++    .|++++.||
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~l~s~~~dg   79 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL---TGHEGPVWRVDWAHPKFGTILASCSYDG   79 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe---cCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence            34566 999999999999  8999999999 999999986556666665   679999999999843    399999999


Q ss_pred             eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEEEECCCcEEEEE
Q 013717          163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYSVSWDKSLKIWR  238 (437)
Q Consensus       163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd  238 (437)
                      .|++||+.+++....                            ..+..|...|.+++|++    .++++++.||.|++||
T Consensus        80 ~v~iwd~~~~~~~~~----------------------------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d  131 (379)
T 3jrp_A           80 KVLIWKEENGRWSQI----------------------------AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE  131 (379)
T ss_dssp             CEEEEEEETTEEEEE----------------------------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred             EEEEEEcCCCceeEe----------------------------eeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEe
Confidence            999999987652111                            12235889999999987    5899999999999999


Q ss_pred             CCCcc--eEEEeecccccEEEEEEec-------------CCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEE
Q 013717          239 ASDLR--CLESIKAHEDAVNAVAVSA-------------GGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNA  302 (437)
Q Consensus       239 ~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~  302 (437)
                      +.+..  ....+..|...|.+++|+|             ++. +++++.||.|++||++...........+.+|...|.+
T Consensus       132 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~  211 (379)
T 3jrp_A          132 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD  211 (379)
T ss_dssp             CCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred             cCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeE
Confidence            98873  4455668999999999999             566 9999999999999998766666677788899999999


Q ss_pred             EEEccC---CCEEEEEeCCCcEEEEECCCCccceE-EeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCC
Q 013717          303 LALSDD---GTVLFSGACDRSILVWDREDSANHMV-VTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       303 ~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~  374 (437)
                      ++|+|+   +++|++++.||.|++||++.+..... .......|...+.+++|+++  +|++++.||.|++|++....
T Consensus       212 ~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          212 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred             EEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence            999999   89999999999999999987643322 22233457888988888755  99999999999999988544

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.4e-34  Score=264.42  Aligned_cols=287  Identities=17%  Similarity=0.193  Sum_probs=224.6

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcc-----eeeeec-CccCCeEEEEee-C--------CEEEEEecC-eEEEEe
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLC-----INSVQL-GHKLPIGCIAVH-H--------NFLYAASSH-EINVYD  123 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~-----~~~~~~-~h~~~V~~l~~~-~--------~~l~s~~~d-~v~vwd  123 (437)
                      .++.+.|  ..+++++.||.|.+|+.....     .+...+ +|...|.+++|+ .        ++|++++.| .|++||
T Consensus        20 ~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~   97 (397)
T 1sq9_A           20 FSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYR   97 (397)
T ss_dssp             EEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEE
T ss_pred             EEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEE
Confidence            4677777  889999999999999997655     345555 999999999998 4        799999999 999999


Q ss_pred             CCCCceee---eeccccCCCC-----cccEEEEEEe----CC--e-EEEEecCCeEEEEeCCC------CcccccccccC
Q 013717          124 RTGTTWTS---INTFNDNDSS-----SGSVKSVTFC----DG--K-IFTAHQDCKIRVWQLTP------TKHHKLKTTLP  182 (437)
Q Consensus       124 ~~~~~~~~---~~~~~~~~~h-----~~~v~~l~~~----~~--~-l~s~~~dg~i~iwd~~~------~~~~~~~~~~~  182 (437)
                      +.++....   ...+   ..|     ...|.+++|+    ++  . |++++.||.|++||+.+      ++.......  
T Consensus        98 ~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--  172 (397)
T 1sq9_A           98 ITREDETKKVIFEKL---DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPT--  172 (397)
T ss_dssp             EEECTTTCCEEEEEE---CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCE--
T ss_pred             ccCCcccccccceee---cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCc--
Confidence            98754200   3333   446     6999999999    55  4 88999999999999987      432220000  


Q ss_pred             ccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeec---c---cccE
Q 013717          183 TVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKA---H---EDAV  255 (437)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~---~~~v  255 (437)
                                   .  .+.. .......|...|.+++|++ .++++++.||.|++||+++++.+..+..   |   ...|
T Consensus       173 -------------~--~~~~-~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i  236 (397)
T 1sq9_A          173 -------------L--ELQG-TVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI  236 (397)
T ss_dssp             -------------E--EEEE-EECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred             -------------c--eeee-eeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCcc
Confidence                         0  0000 0000124888999999998 5899999999999999999999999988   8   9999


Q ss_pred             EEEEEecCCe-EEEEeCC---CeEEEecCCCCcccceeeEEeeC-------------ccccEEEEEEccCCCEEEEEeCC
Q 013717          256 NAVAVSAGGT-VYTGSAD---RKIRVWAKPFNEKRHALIATLEK-------------HKSAVNALALSDDGTVLFSGACD  318 (437)
Q Consensus       256 ~~~~~~~~~~-l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~d  318 (437)
                      .+++|+|++. |++++.|   |.|++||++..    +.+..+..             |...|.+++|+|++++|++++.|
T Consensus       237 ~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  312 (397)
T 1sq9_A          237 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFG----ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD  312 (397)
T ss_dssp             EEEEECSSTTEEEEEEEETTEEEEEEEETTTC----CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred             ceEEECCCCCEEEEEecCCCCceEEEEECCCC----cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC
Confidence            9999999998 9999999   99999998754    35667777             89999999999999999999999


Q ss_pred             CcEEEEECCCCccceEEeeee--ccc---------------ccceEEEEeeCC------------EEEEEeCCCcEEEee
Q 013717          319 RSILVWDREDSANHMVVTGAL--RGH---------------GKAILCLINVAG------------LLMSGSADRTVRIWQ  369 (437)
Q Consensus       319 g~i~i~d~~~~~~~~~~~~~~--~~~---------------~~~i~~~~~~~~------------~l~~~~~dg~i~iwd  369 (437)
                      |.|++||+++++....+....  .+|               ...|.+++++++            +|++++.||.|++|+
T Consensus       313 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~  392 (397)
T 1sq9_A          313 GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  392 (397)
T ss_dssp             SEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             CeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence            999999998876433332000  055               888999988755            899999999999999


Q ss_pred             CCCC
Q 013717          370 RGSD  373 (437)
Q Consensus       370 ~~~~  373 (437)
                      +.++
T Consensus       393 ~~~g  396 (397)
T 1sq9_A          393 EAGG  396 (397)
T ss_dssp             EEC-
T ss_pred             cCCC
Confidence            9864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=7.1e-34  Score=257.40  Aligned_cols=280  Identities=11%  Similarity=0.079  Sum_probs=215.3

Q ss_pred             cccceeeccccccccccCCC-------ceeEEecCCCcce---------eeeec-CccCCeEEEEeeCCEEEEEe-----
Q 013717           58 SNLSLQTLPSVPSLQKLSPD-------ETINFSSASHLCI---------NSVQL-GHKLPIGCIAVHHNFLYAAS-----  115 (437)
Q Consensus        58 ~~~~~~~~~~~~~~~s~s~d-------g~i~~~~~~~~~~---------~~~~~-~h~~~V~~l~~~~~~l~s~~-----  115 (437)
                      +..++.|.|+...+++++.+       ..|++|+.+....         ....+ +|...|.+++++++.+++|.     
T Consensus        16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~~   95 (365)
T 4h5i_A           16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENST   95 (365)
T ss_dssp             CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCHH
T ss_pred             CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCcc
Confidence            34588999999999988653       3599999854322         12345 89999999999988888764     


Q ss_pred             ------cC-eEEEEeCCCCc--eeeeec--cccCCCCcccEEEEEEeCCe--EE--EEecCCeEEEEeCCCCcccccccc
Q 013717          116 ------SH-EINVYDRTGTT--WTSINT--FNDNDSSSGSVKSVTFCDGK--IF--TAHQDCKIRVWQLTPTKHHKLKTT  180 (437)
Q Consensus       116 ------~d-~v~vwd~~~~~--~~~~~~--~~~~~~h~~~v~~l~~~~~~--l~--s~~~dg~i~iwd~~~~~~~~~~~~  180 (437)
                            .| .+++|++....  ......  +.....+...+.+++|+|++  ++  +++.|++|++||+++++....+  
T Consensus        96 ~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~--  173 (365)
T 4h5i_A           96 KITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI--  173 (365)
T ss_dssp             HHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE--
T ss_pred             EEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe--
Confidence                  46 89999987642  122211  11223456679999999876  44  4557999999999987654333  


Q ss_pred             cCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEe--ecccccEE
Q 013717          181 LPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESI--KAHEDAVN  256 (437)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~  256 (437)
                                                   .|...|.+++|+|  +++++++ ++.+++|+..+++.+...  ..|...|.
T Consensus       174 -----------------------------~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (365)
T 4h5i_A          174 -----------------------------ETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLS  223 (365)
T ss_dssp             -----------------------------ECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEE
T ss_pred             -----------------------------CCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEE
Confidence                                         3778899999999  6777776 556778887777765443  46888999


Q ss_pred             EEEEecCCe-EEEEeCCC----eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCcc
Q 013717          257 AVAVSAGGT-VYTGSADR----KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSAN  331 (437)
Q Consensus       257 ~~~~~~~~~-l~~~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (437)
                      +++|+|++. +++++.|+    .+++|++............+.+|...|++++|+|||++|++|+.|++|+|||+++++.
T Consensus       224 ~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~  303 (365)
T 4h5i_A          224 KINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM  303 (365)
T ss_dssp             EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred             EEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE
Confidence            999999999 88888887    6888987655444444567788999999999999999999999999999999987753


Q ss_pred             ceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCC
Q 013717          332 HMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       332 ~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~  372 (437)
                      ..   ..+.+|...|.+++|+++  +|++|+.|++|+|||+..
T Consensus       304 ~~---~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          304 SK---IFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EE---EETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             EE---EecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            22   225789999999999866  999999999999999965

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-33  Score=251.73  Aligned_cols=281  Identities=16%  Similarity=0.169  Sum_probs=233.1

Q ss_pred             cccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeee
Q 013717           58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSIN  133 (437)
Q Consensus        58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~  133 (437)
                      ...++.+.|....+++.+.||.|.+|+.... .....+ +|...|.+++|+  +++|++++.| .|++||+.+++  ...
T Consensus        34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~  110 (369)
T 3zwl_B           34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ--CVA  110 (369)
T ss_dssp             CEEEEEECTTSCEEEEEESSSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC--EEE
T ss_pred             eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEE
Confidence            3357899999999999999999999998764 445556 999999999999  8999999999 99999999853  444


Q ss_pred             ccccCCCCcccEEEEEEeCCe--EEEEecC-----CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccce
Q 013717          134 TFNDNDSSSGSVKSVTFCDGK--IFTAHQD-----CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKK  206 (437)
Q Consensus       134 ~~~~~~~h~~~v~~l~~~~~~--l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (437)
                      .+    .|...|.+++|+++.  +++++.+     |.|++||+.............                   .....
T Consensus       111 ~~----~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~-------------------~~~~~  167 (369)
T 3zwl_B          111 TW----KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS-------------------EEPIH  167 (369)
T ss_dssp             EE----ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC-------------------SSCSE
T ss_pred             Ee----ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccc-------------------cceee
Confidence            44    278899999999765  8888888     999999998765433222111                   11222


Q ss_pred             eeecCCC--cEEEEEeCC--CeEEEEECCCcEEEEECCC-cceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecC
Q 013717          207 LWIEHGD--AVTGLAVNN--GLIYSVSWDKSLKIWRASD-LRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAK  280 (437)
Q Consensus       207 ~~~~~~~--~v~~~~~~~--~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~  280 (437)
                      .+..|..  .+.+++|++  +++++++.||.|++||+++ .+.+..+..|...|.+++|+|++. |++++.||.|++||+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~  247 (369)
T 3zwl_B          168 KIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV  247 (369)
T ss_dssp             EEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             eccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEEC
Confidence            3345665  999999998  8999999999999999998 788888889999999999999998 999999999999998


Q ss_pred             CCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC--------------cEEEEECCCCccceEEeeeecccccce
Q 013717          281 PFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR--------------SILVWDREDSANHMVVTGALRGHGKAI  346 (437)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~i  346 (437)
                      +...    .+..+. +...+..++|+|+++++++++.++              .+++||+.+++    ....+.+|...|
T Consensus       248 ~~~~----~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~v  318 (369)
T 3zwl_B          248 STLQ----VLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE----EIGRVQGHFGPL  318 (369)
T ss_dssp             TTCC----EEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC----EEEEEECCSSCE
T ss_pred             CCCc----eeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc----chhheecccCcE
Confidence            7543    445554 778899999999999999999988              89999998776    444567799999


Q ss_pred             EEEEeeCC--EEEEEeCCCcEEEeeCCCC
Q 013717          347 LCLINVAG--LLMSGSADRTVRIWQRGSD  373 (437)
Q Consensus       347 ~~~~~~~~--~l~~~~~dg~i~iwd~~~~  373 (437)
                      .+++++++  +|++++.||.|++|+++.+
T Consensus       319 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          319 NTVAISPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence            99998755  9999999999999999864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-34  Score=260.83  Aligned_cols=250  Identities=18%  Similarity=0.254  Sum_probs=209.8

Q ss_pred             CCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717          139 DSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT  216 (437)
Q Consensus       139 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  216 (437)
                      .+|...|.+++|+++.  |++++.||.|++||+.......                            ...+.+|...|.
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~----------------------------~~~~~~h~~~v~   59 (379)
T 3jrp_A            8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKL----------------------------IDTLTGHEGPVW   59 (379)
T ss_dssp             EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEE----------------------------EEEECCCSSCEE
T ss_pred             cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCccee----------------------------eeEecCCCCcEE
Confidence            5799999999999765  9999999999999997432111                            122346999999


Q ss_pred             EEEeCC----CeEEEEECCCcEEEEECCCcc--eEEEeecccccEEEEEEecC--Ce-EEEEeCCCeEEEecCCCCcccc
Q 013717          217 GLAVNN----GLIYSVSWDKSLKIWRASDLR--CLESIKAHEDAVNAVAVSAG--GT-VYTGSADRKIRVWAKPFNEKRH  287 (437)
Q Consensus       217 ~~~~~~----~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~-l~~~~~dg~v~iwd~~~~~~~~  287 (437)
                      +++|++    .+|++++.||.|++||+.+++  .+..+..|...|.+++|+|+  +. +++++.||.|++||++....  
T Consensus        60 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--  137 (379)
T 3jrp_A           60 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--  137 (379)
T ss_dssp             EEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC--
T ss_pred             EEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc--
Confidence            999973    899999999999999999987  67777789999999999998  77 99999999999999976532  


Q ss_pred             eeeEEeeCccccEEEEEEcc-------------CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC-
Q 013717          288 ALIATLEKHKSAVNALALSD-------------DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA-  353 (437)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  353 (437)
                      .....+..|...|.+++|+|             ++.+|++++.||.|++||++.+.........+.+|...|.++++++ 
T Consensus       138 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~  217 (379)
T 3jrp_A          138 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT  217 (379)
T ss_dssp             CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred             eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCC
Confidence            23345678999999999999             6999999999999999999987776667777889999999999874 


Q ss_pred             ----CEEEEEeCCCcEEEeeCCCCCCee--eeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          354 ----GLLMSGSADRTVRIWQRGSDGRFG--CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       354 ----~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                          .+|++++.||.|++||+..+....  .+.....|...|++++|+|++.     +|++++.||.|++|++..+
T Consensus       218 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-----~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          218 VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-----VLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             CSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC-----CEEEEESSSSEEEEEEEET
T ss_pred             CCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCC-----EEEEecCCCcEEEEeCCCC
Confidence                489999999999999999865322  2233345889999999999985     6999999999999999853

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.3e-33  Score=258.51  Aligned_cols=276  Identities=22%  Similarity=0.299  Sum_probs=216.2

Q ss_pred             cccccCCCceeEEecCCCccee-eeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCccc
Q 013717           70 SLQKLSPDETINFSSASHLCIN-SVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGS  144 (437)
Q Consensus        70 ~~~s~s~dg~i~~~~~~~~~~~-~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~  144 (437)
                      .+++++.|++|++|+....... ...+ +|...|+||+|+  |++||+|+.| .|+|||+.++  +.+..+   .+|...
T Consensus       117 n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~--~~~~~~---~~h~~~  191 (420)
T 4gga_A          117 NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--KRLRNM---TSHSAR  191 (420)
T ss_dssp             SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEE---CCCSSC
T ss_pred             CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC--cEEEEE---eCCCCc
Confidence            4566788999999999764332 2334 788999999999  8999999999 9999999985  445554   679999


Q ss_pred             EEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--
Q 013717          145 VKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--  222 (437)
Q Consensus       145 v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--  222 (437)
                      +.++.+++..+++|+.|+.+++||.......                             ...+.+|...+..+.+.+  
T Consensus       192 v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~-----------------------------~~~~~~h~~~~~~~~~~~~g  242 (420)
T 4gga_A          192 VGSLSWNSYILSSGSRSGHIHHHDVRVAEHH-----------------------------VATLSGHSQEVCGLRWAPDG  242 (420)
T ss_dssp             EEEEEEETTEEEEEETTSEEEEEETTSSSCE-----------------------------EEEEECCSSCEEEEEECTTS
T ss_pred             eEEEeeCCCEEEEEeCCCceeEeeeccccee-----------------------------eEEecccccceeeeeecCCC
Confidence            9999999988999999999999998765321                             122357999999999998  


Q ss_pred             CeEEEEECCCcEEEEECCCcc----eEEEeecccccEEEEEEecCCe--EEE--EeCCCeEEEecCCCCcccceeeEEee
Q 013717          223 GLIYSVSWDKSLKIWRASDLR----CLESIKAHEDAVNAVAVSAGGT--VYT--GSADRKIRVWAKPFNEKRHALIATLE  294 (437)
Q Consensus       223 ~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~--l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~  294 (437)
                      .++++++.|+.+++||..+++    .+.....|...|.+++|+|++.  +++  |+.|+.|++||+.++.    ....+.
T Consensus       243 ~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~----~~~~~~  318 (420)
T 4gga_A          243 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA----CLSAVD  318 (420)
T ss_dssp             SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE----EEEEEE
T ss_pred             CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc----cceeec
Confidence            899999999999999998765    3456667899999999999776  444  4579999999987653    455554


Q ss_pred             CccccEEEEEEccCCCEEEEEe--CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeC
Q 013717          295 KHKSAVNALALSDDGTVLFSGA--CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQR  370 (437)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~  370 (437)
                       +...+.++.|+|+++.+++++  .|+.|+|||+.+++    ....+.+|...|.+++++++  +|++|+.|++|+|||+
T Consensus       319 -~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~----~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv  393 (420)
T 4gga_A          319 -AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA----KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC  393 (420)
T ss_dssp             -CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             -cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence             456789999999999988765  79999999998876    45567889999999998755  9999999999999999


Q ss_pred             CCCCCeeeeeeecCCCCCeeE
Q 013717          371 GSDGRFGCLAVLEGHTKPVKS  391 (437)
Q Consensus       371 ~~~~~~~~~~~~~~h~~~v~~  391 (437)
                      ....   +......+...+..
T Consensus       394 ~~~~---~~~~~~~~~~~~~~  411 (420)
T 4gga_A          394 FELD---PARRREREKASAAK  411 (420)
T ss_dssp             SCSS---CC------------
T ss_pred             CCCC---ccchhhhccCCccc
Confidence            8654   34444444444333

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=5.2e-34  Score=262.54  Aligned_cols=286  Identities=16%  Similarity=0.267  Sum_probs=219.9

Q ss_pred             eEEEEeeCCE---EEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC-Ce--EEEEecCCeEEEEeCCCCc
Q 013717          101 IGCIAVHHNF---LYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD-GK--IFTAHQDCKIRVWQLTPTK  173 (437)
Q Consensus       101 V~~l~~~~~~---l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~--l~s~~~dg~i~iwd~~~~~  173 (437)
                      ...+++++++   +++++.+ .|+||++... .+....+....+|.+.|.+++|++ +.  |++|+.||+|++||+.++.
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~-~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKT-GRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCC-EECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccC-CCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            3456777443   3346777 9999999663 122233333468999999999997 44  9999999999999998874


Q ss_pred             ccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEe--
Q 013717          174 HHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESI--  248 (437)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~--  248 (437)
                      ......                       .....+.+|...|.+++|++   .+|++++.||.|++||+++++.+..+  
T Consensus       116 ~~~~~~-----------------------~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  172 (402)
T 2aq5_A          116 LVLPLR-----------------------EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP  172 (402)
T ss_dssp             CSSCBC-----------------------SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT
T ss_pred             CccccC-----------------------CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec
Confidence            322111                       11233457999999999998   48999999999999999999999999  


Q ss_pred             ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEe-eCcccc-EEEEEEccCCCEEEEE---eCCCcEE
Q 013717          249 KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATL-EKHKSA-VNALALSDDGTVLFSG---ACDRSIL  322 (437)
Q Consensus       249 ~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~~~---~~dg~i~  322 (437)
                      ..|...|.+++|+|++. |++++.||.|++||++...    .+..+ ..|... +.++.|+|++++|++|   +.|+.|+
T Consensus       173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~  248 (402)
T 2aq5_A          173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT----VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVA  248 (402)
T ss_dssp             TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE----EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEE
T ss_pred             CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc----eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEE
Confidence            78999999999999998 9999999999999987543    55566 567665 8999999999999999   7999999


Q ss_pred             EEECCCCccceEEeeeecccccceEEEEeeCC--EEE-EEeCCCcEEEeeCCCCCC-eeeeeeecCCCCCeeEEEEEccC
Q 013717          323 VWDREDSANHMVVTGALRGHGKAILCLINVAG--LLM-SGSADRTVRIWQRGSDGR-FGCLAVLEGHTKPVKSLTAVTEE  398 (437)
Q Consensus       323 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~-~~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~  398 (437)
                      +||+++.+......  ...|...+.++.++++  +|+ +|+.||.|++||+.+++. ...+..+. |..+|.+++|+|++
T Consensus       249 iwd~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~  325 (402)
T 2aq5_A          249 LWDTKHLEEPLSLQ--ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKR  325 (402)
T ss_dssp             EEETTBCSSCSEEE--ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGG
T ss_pred             EEcCccccCCceEE--eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEeccc
Confidence            99998865433222  2245667888887755  665 566899999999998763 23333333 67999999999987


Q ss_pred             CCCceEEEEEecCCCcEEEEeeccCC
Q 013717          399 GQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       399 ~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      .     +++  +.|+.+++|++..+.
T Consensus       326 ~-----~~~--s~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          326 G-----LEV--NKCEIARFYKLHERK  344 (402)
T ss_dssp             G-----SCG--GGTEEEEEEEEETTE
T ss_pred             c-----cce--ecceeEEEEEcCCCc
Confidence            4     343  457799999998753

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.9e-34  Score=261.85  Aligned_cols=280  Identities=19%  Similarity=0.260  Sum_probs=224.8

Q ss_pred             ccceeeccc----cccccccCCCceeEEecCCCcceeeee--c---CccCCeEEEEee------CCEEEEEecC-eEEEE
Q 013717           59 NLSLQTLPS----VPSLQKLSPDETINFSSASHLCINSVQ--L---GHKLPIGCIAVH------HNFLYAASSH-EINVY  122 (437)
Q Consensus        59 ~~~~~~~~~----~~~~~s~s~dg~i~~~~~~~~~~~~~~--~---~h~~~V~~l~~~------~~~l~s~~~d-~v~vw  122 (437)
                      ..++.+.|.    ...+++.+.++.|.+|+..........  +   .|...|.+++|+      +++|++|+.| .|++|
T Consensus        21 v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~  100 (366)
T 3k26_A           21 LFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRII  100 (366)
T ss_dssp             EEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEE
T ss_pred             eEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEE
Confidence            357788883    556777788889999999754332222  2   377889999998      2489999999 99999


Q ss_pred             eCCCCceeeeeccccCCCCcccEEEEEEeC-Ce--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeE
Q 013717          123 DRTGTTWTSINTFNDNDSSSGSVKSVTFCD-GK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVT  199 (437)
Q Consensus       123 d~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (437)
                      |+.++  +.+..+   .+|...|.+++|++ +.  |++++.||.|++||+++++....+..+                  
T Consensus       101 d~~~~--~~~~~~---~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------  157 (366)
T 3k26_A          101 NPITM--QCIKHY---VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV------------------  157 (366)
T ss_dssp             CTTTC--CEEEEE---ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST------------------
T ss_pred             Echhc--eEeeee---cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc------------------
Confidence            99985  344444   46999999999997 43  999999999999999987655443211                  


Q ss_pred             EeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee----------------------------
Q 013717          200 VRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK----------------------------  249 (437)
Q Consensus       200 ~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~----------------------------  249 (437)
                               .+|...|.+++|++  ++|++++.||.|++||+++++....+.                            
T Consensus       158 ---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (366)
T 3k26_A          158 ---------EGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD  228 (366)
T ss_dssp             ---------TSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred             ---------ccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence                     25899999999998  899999999999999999876544333                            


Q ss_pred             cccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcc----------cceeeEEeeCccccEEEEEEccC--CCEEEEEeC
Q 013717          250 AHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEK----------RHALIATLEKHKSAVNALALSDD--GTVLFSGAC  317 (437)
Q Consensus       250 ~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----------~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~  317 (437)
                      .|...|.+++|+ ...+++++.||.|++||+.....          ....+..+..|...|.+++|+|+  +++|++|+.
T Consensus       229 ~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~  307 (366)
T 3k26_A          229 IHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ  307 (366)
T ss_dssp             SCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT
T ss_pred             CCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec
Confidence            388999999999 44599999999999999875432          12456778889999999999999  999999999


Q ss_pred             CCcEEEEECCCCccceEEeeeeccc--ccceEEEEeeCC--EEEEEeCCCcEEEeeCC
Q 013717          318 DRSILVWDREDSANHMVVTGALRGH--GKAILCLINVAG--LLMSGSADRTVRIWQRG  371 (437)
Q Consensus       318 dg~i~i~d~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~  371 (437)
                      ||.|++||+.+++........+.+|  ...|.++.|+++  +|++++.||.|++||+.
T Consensus       308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            9999999999876554444556666  789999998755  99999999999999985

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=9.8e-34  Score=257.33  Aligned_cols=289  Identities=16%  Similarity=0.205  Sum_probs=226.0

Q ss_pred             ceeeeec-CccCCeEEEEee-C----CEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEe
Q 013717           89 CINSVQL-GHKLPIGCIAVH-H----NFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAH  159 (437)
Q Consensus        89 ~~~~~~~-~h~~~V~~l~~~-~----~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~  159 (437)
                      ...+..+ +|.+.|++++|+ .    ++|++|+.| .|++||+.+........+   .+|...|.+++|+++.  |++++
T Consensus        29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~  105 (368)
T 3mmy_A           29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ---QMHTGPVLDVCWSDDGSKVFTAS  105 (368)
T ss_dssp             TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEE---EECSSCEEEEEECTTSSEEEEEE
T ss_pred             cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEe---ccccCCEEEEEECcCCCEEEEEc
Confidence            4455566 999999999999 3    799999999 999999987323332333   4699999999999765  99999


Q ss_pred             cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe--CC--CeEEEEECCCcEE
Q 013717          160 QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV--NN--GLIYSVSWDKSLK  235 (437)
Q Consensus       160 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~--~~l~~~~~dg~i~  235 (437)
                      .||.|++||+.+++....                               ..|...|.+++|  ++  .++++++.||.|+
T Consensus       106 ~dg~v~iwd~~~~~~~~~-------------------------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~  154 (368)
T 3mmy_A          106 CDKTAKMWDLSSNQAIQI-------------------------------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLK  154 (368)
T ss_dssp             TTSEEEEEETTTTEEEEE-------------------------------EECSSCEEEEEEEECSSCEEEEEEETTSEEE
T ss_pred             CCCcEEEEEcCCCCceee-------------------------------ccccCceEEEEEEeCCCCCEEEEccCCCcEE
Confidence            999999999998764332                               359999999999  66  6799999999999


Q ss_pred             EEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCE----
Q 013717          236 IWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTV----  311 (437)
Q Consensus       236 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----  311 (437)
                      +||+++++.+..+..+. .+.++.+.++ .+++++.++.+++|+++.........  ...+...+.++.+.++...    
T Consensus       155 vwd~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  230 (368)
T 3mmy_A          155 FWDTRSSNPMMVLQLPE-RCYCADVIYP-MAVVATAERGLIVYQLENQPSEFRRI--ESPLKHQHRCVAIFKDKQNKPTG  230 (368)
T ss_dssp             EECSSCSSCSEEEECSS-CEEEEEEETT-EEEEEEGGGCEEEEECSSSCEEEEEC--CCSCSSCEEEEEEEECTTSCEEE
T ss_pred             EEECCCCcEEEEEecCC-CceEEEecCC-eeEEEeCCCcEEEEEeccccchhhhc--cccccCCCceEEEcccCCCCCCe
Confidence            99999999988887554 6777777643 58888999999999997654322222  2234455666666665544    


Q ss_pred             EEEEeCCCcEEEEECCCCccceEEeeeeccccc------------ceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCee
Q 013717          312 LFSGACDRSILVWDREDSANHMVVTGALRGHGK------------AILCLINVAG--LLMSGSADRTVRIWQRGSDGRFG  377 (437)
Q Consensus       312 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------------~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~  377 (437)
                      +++++.||.|++||++..... .....+.+|..            .|.+++++++  +|++|+.||.|++||+.+++   
T Consensus       231 ~~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~---  306 (368)
T 3mmy_A          231 FALGSIEGRVAIHYINPPNPA-KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART---  306 (368)
T ss_dssp             EEEEETTSEEEEEESSCSCHH-HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE---
T ss_pred             EEEecCCCcEEEEecCCCCcc-ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc---
Confidence            999999999999999876321 12223344544            6888888765  99999999999999999866   


Q ss_pred             eeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          378 CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       378 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      ++..+.+|..+|++++|+|++.     +|++++.|+..+.|++-..+
T Consensus       307 ~~~~~~~~~~~v~~~~~s~~g~-----~l~~~s~d~~~~~~~~~~~~  348 (368)
T 3mmy_A          307 KLKTSEQLDQPISACCFNHNGN-----IFAYASSYDWSKGHEFYNPQ  348 (368)
T ss_dssp             EEEECCCCSSCEEEEEECTTSS-----CEEEEECCCSTTCGGGCCTT
T ss_pred             EEEEecCCCCCceEEEECCCCC-----eEEEEecccccccccccCCC
Confidence            7889999999999999999985     79999999877777765443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2e-33  Score=256.92  Aligned_cols=271  Identities=20%  Similarity=0.173  Sum_probs=210.4

Q ss_pred             cceeecccc-ccccccCCCceeEEecCCCcceeeee-c-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeee
Q 013717           60 LSLQTLPSV-PSLQKLSPDETINFSSASHLCINSVQ-L-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSI  132 (437)
Q Consensus        60 ~~~~~~~~~-~~~~s~s~dg~i~~~~~~~~~~~~~~-~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~  132 (437)
                      .++.+.|.. ..+++++.||.|.+|+.......... . +|...|.+++|+   +++|++++.| .|++||+.+...   
T Consensus        77 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---  153 (383)
T 3ei3_B           77 TSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI---  153 (383)
T ss_dssp             EEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE---
T ss_pred             EEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce---
Confidence            578899988 89999999999999999754443333 3 899999999998   4899999999 999999997433   


Q ss_pred             eccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeec
Q 013717          133 NTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIE  210 (437)
Q Consensus       133 ~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (437)
                      ..+.....|...|.+++|+++.  |++++.|+.|++||++ ++...                              .+.+
T Consensus       154 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~------------------------------~~~~  202 (383)
T 3ei3_B          154 QVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIF------------------------------KEKL  202 (383)
T ss_dssp             EEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEE------------------------------EEEC
T ss_pred             EEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEE------------------------------Eecc
Confidence            3333335677899999999765  9999999999999994 32211                              2246


Q ss_pred             CCCcEEEEEeCC--C-eEEEEECCCcEEEEECCC----cceEEEeecccccEEEEEEec-CCe-EEEEeCCCeEEEecCC
Q 013717          211 HGDAVTGLAVNN--G-LIYSVSWDKSLKIWRASD----LRCLESIKAHEDAVNAVAVSA-GGT-VYTGSADRKIRVWAKP  281 (437)
Q Consensus       211 ~~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~dg~v~iwd~~  281 (437)
                      |...|.+++|++  . ++++++.|+.|++||+++    ++++..+ .|...|.+++|+| ++. |++++.|+.|++||++
T Consensus       203 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~  281 (383)
T 3ei3_B          203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY  281 (383)
T ss_dssp             SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred             CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence            999999999999  4 899999999999999987    5666666 6999999999999 988 9999999999999997


Q ss_pred             CCcccceeeEEe---eCc----------cccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecc--cccce
Q 013717          282 FNEKRHALIATL---EKH----------KSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRG--HGKAI  346 (437)
Q Consensus       282 ~~~~~~~~~~~~---~~~----------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~i  346 (437)
                      ............   ..|          ...+..++|+|+|++  +++.||.|++||+.+++...    .+.+  |...+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~----~l~~~~~~~~~  355 (383)
T 3ei3_B          282 DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVH----QLRDPNAAGII  355 (383)
T ss_dssp             BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEE----EECBTTBCSCC
T ss_pred             CCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceee----eecCCCCCceE
Confidence            654322221100   011          234556778888877  78899999999998876433    3333  45566


Q ss_pred             EEEEee--CCEEEEEeCCCcEEEeeCCC
Q 013717          347 LCLINV--AGLLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       347 ~~~~~~--~~~l~~~~~dg~i~iwd~~~  372 (437)
                      .+++|+  +.+|++|+ ||.|+|||+++
T Consensus       356 ~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          356 SLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             EEEEEecCccEEEEec-CCcEEEEecCC
Confidence            665665  45899997 99999999875

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.1e-33  Score=254.17  Aligned_cols=286  Identities=12%  Similarity=0.153  Sum_probs=220.4

Q ss_pred             cccceeeccccccc-cccCC---CceeEEecCCCcceeeeec-CccCCeEEEEee-C----CEEEEEecC-eEEEEeCCC
Q 013717           58 SNLSLQTLPSVPSL-QKLSP---DETINFSSASHLCINSVQL-GHKLPIGCIAVH-H----NFLYAASSH-EINVYDRTG  126 (437)
Q Consensus        58 ~~~~~~~~~~~~~~-~s~s~---dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~-~----~~l~s~~~d-~v~vwd~~~  126 (437)
                      ...++.+.|....+ ++.+.   ||.|.+|+........... +|...|.+++|+ .    ++|++|+.| .|++||+.+
T Consensus        20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~   99 (357)
T 3i2n_A           20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEA   99 (357)
T ss_dssp             CEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTS
T ss_pred             ceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCC
Confidence            33578899977544 45555   9999999998765444444 999999999998 3    899999999 999999998


Q ss_pred             CceeeeeccccCCCCcccEEEEEEe------CC--eEEEEecCCeEEEEeCCCCc-ccccccccCccccceeeecCCCCe
Q 013717          127 TTWTSINTFNDNDSSSGSVKSVTFC------DG--KIFTAHQDCKIRVWQLTPTK-HHKLKTTLPTVNDRLLRFMLPNSY  197 (437)
Q Consensus       127 ~~~~~~~~~~~~~~h~~~v~~l~~~------~~--~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  197 (437)
                      +. .....+   .+|...|.++.|.      ++  .|++++.||.|++||+.+++ ....+....               
T Consensus       100 ~~-~~~~~~---~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~---------------  160 (357)
T 3i2n_A          100 PE-MPVYSV---KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ---------------  160 (357)
T ss_dssp             CS-SCSEEE---CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCT---------------
T ss_pred             CC-ccEEEE---EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccC---------------
Confidence            53 133333   5799999999764      34  39999999999999998775 222222110               


Q ss_pred             eEEeeccceeeecCCCcEEEEE----eCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEec---CCe-EE
Q 013717          198 VTVRRHKKKLWIEHGDAVTGLA----VNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA---GGT-VY  267 (437)
Q Consensus       198 ~~~~~~~~~~~~~~~~~v~~~~----~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~~-l~  267 (437)
                                 ..+...+.+++    |++  .++++++.||.|++||+++++.... ..|...|.+++|+|   ++. ++
T Consensus       161 -----------~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~  228 (357)
T 3i2n_A          161 -----------GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLV  228 (357)
T ss_dssp             -----------TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEE
T ss_pred             -----------CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEE
Confidence                       01244788888    455  8999999999999999999887554 46889999999999   777 99


Q ss_pred             EEeCCCeEEEecCCCCccccee-eEEeeCccccEEEEEEccCCC-EEEEEeCCCcEEEEECCCCccce------------
Q 013717          268 TGSADRKIRVWAKPFNEKRHAL-IATLEKHKSAVNALALSDDGT-VLFSGACDRSILVWDREDSANHM------------  333 (437)
Q Consensus       268 ~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~------------  333 (437)
                      +++.||.|++||++........ ...+..|...|.+++|+|+++ +|++++.||.|++||++.+....            
T Consensus       229 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~  308 (357)
T 3i2n_A          229 ATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVA  308 (357)
T ss_dssp             EEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCC
T ss_pred             EECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccc
Confidence            9999999999998754332221 224458999999999999998 89999999999999998654331            


Q ss_pred             ---EEeeeecccccceEEEEeeCC--EEE-EEeCCCcEEEeeCCCCC
Q 013717          334 ---VVTGALRGHGKAILCLINVAG--LLM-SGSADRTVRIWQRGSDG  374 (437)
Q Consensus       334 ---~~~~~~~~~~~~i~~~~~~~~--~l~-~~~~dg~i~iwd~~~~~  374 (437)
                         .....+.+|...|.+++|+++  +|+ +++.||.|++||+.+.+
T Consensus       309 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          309 GSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             CEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             cccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence               345567889999999998865  666 89999999999998743

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.6e-34  Score=266.14  Aligned_cols=273  Identities=19%  Similarity=0.169  Sum_probs=202.9

Q ss_pred             cceeecccc-ccccccCCCceeEEecCCCcc-eeeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeee
Q 013717           60 LSLQTLPSV-PSLQKLSPDETINFSSASHLC-INSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSI  132 (437)
Q Consensus        60 ~~~~~~~~~-~~~~s~s~dg~i~~~~~~~~~-~~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~  132 (437)
                      .++.++|.. ..+++++.||+|.+|+..... .....+ +|.+.|++|+|+   +++|++|+.| +|++||++++.....
T Consensus       123 ~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~  202 (435)
T 4e54_B          123 TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVF  202 (435)
T ss_dssp             EEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEE
T ss_pred             EEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEE
Confidence            478999965 578899999999999996543 444455 999999999997   6899999999 999999988543333


Q ss_pred             eccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeec
Q 013717          133 NTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIE  210 (437)
Q Consensus       133 ~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (437)
                      ..   ...+...+.+++|+++.  |++|+.||.|++||++... ...                              +.+
T Consensus       203 ~~---~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~~~------------------------------~~~  248 (435)
T 4e54_B          203 AS---SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWN------------------------------LRM  248 (435)
T ss_dssp             EC---CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-CCC------------------------------SBC
T ss_pred             ec---cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-eEE------------------------------Eec
Confidence            32   24566678999999765  9999999999999987532 111                              135


Q ss_pred             CCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEe---ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCC
Q 013717          211 HGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESI---KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFN  283 (437)
Q Consensus       211 ~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~  283 (437)
                      |...|.+++|+|   .++++|+.|+.|++||+++.+....+   .+|...|++++|+|++. |++++.||.|++||+...
T Consensus       249 h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~  328 (435)
T 4e54_B          249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW  328 (435)
T ss_dssp             CSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred             ccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence            999999999997   57889999999999999887654433   47899999999999998 999999999999998765


Q ss_pred             cccceeeEEeeCcc------ccEEEEEEccCCCEEEEEe------------CCCcEEEEECCCCccceEEeeeecccccc
Q 013717          284 EKRHALIATLEKHK------SAVNALALSDDGTVLFSGA------------CDRSILVWDREDSANHMVVTGALRGHGKA  345 (437)
Q Consensus       284 ~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  345 (437)
                      ..    ...+..|.      ..+....|+|++.+++++.            .++.|++||..+++....+   ..+|...
T Consensus       329 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l---~~~~~~~  401 (435)
T 4e54_B          329 DC----PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL---YDPESSG  401 (435)
T ss_dssp             SS----EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE---CCSSCCC
T ss_pred             cc----ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE---eCCCCCc
Confidence            42    22222222      1233445666666655553            3467999999887643322   3467777


Q ss_pred             eEEE-Eee--CCEEEEEeCCCcEEEeeCCCCC
Q 013717          346 ILCL-INV--AGLLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       346 i~~~-~~~--~~~l~~~~~dg~i~iwd~~~~~  374 (437)
                      |.++ +|+  +.+|++|+ |+.|+||+++.++
T Consensus       402 v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk  432 (435)
T 4e54_B          402 ISSLNEFNPMGDTLASAM-GYHILIWSQQEAR  432 (435)
T ss_dssp             CCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred             EEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence            7665 354  55888765 7899999999865

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.2e-32  Score=248.65  Aligned_cols=284  Identities=11%  Similarity=0.083  Sum_probs=207.4

Q ss_pred             eeeec-CccCCeEEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEe--CCe-EEEEecCCeE
Q 013717           91 NSVQL-GHKLPIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC--DGK-IFTAHQDCKI  164 (437)
Q Consensus        91 ~~~~~-~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~-l~s~~~dg~i  164 (437)
                      ++..+ +|...|.+++|+  |++|++|+.+.++|||.+.+.  .....     +...+..+++.  ++. +++++.|++|
T Consensus        11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~v   83 (355)
T 3vu4_A           11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVA--HIMSQ-----EMRHLSKVRMLHRTNYVAFVTGVKEVV   83 (355)
T ss_dssp             --------CCCCCEEEECTTSSEEEEECSSEEEEEEETTEE--EEEEE-----ECSCCCEEEECTTSSEEEEECSSTTEE
T ss_pred             CccccccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcc--eeeee-----ecCCeEEEEEcCCCCEEEEEECCccEE
Confidence            34455 899999999999  899999988888999998843  33222     11235566665  444 4678888999


Q ss_pred             EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCc-c
Q 013717          165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDL-R  243 (437)
Q Consensus       165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~-~  243 (437)
                      ++||..+++....+.                               +...|.++.++++.++++. |+.|++||+.++ +
T Consensus        84 ~iWd~~~~~~~~~~~-------------------------------~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~  131 (355)
T 3vu4_A           84 HIWDDVKKQDVSRIK-------------------------------VDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWK  131 (355)
T ss_dssp             EEEETTTTEEEEEEE-------------------------------CSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCC
T ss_pred             EEEECCCCcEEEEEE-------------------------------CCCceEEEEEcCCEEEEEE-cCEEEEEECCCCce
Confidence            999999886544332                               6678999999997776654 789999999988 6


Q ss_pred             eEEEeecccccEEEEEEecCCeEEE--EeCCCeEEEecCCCCcc-----------ccee-eEEeeCccccEEEEEEccCC
Q 013717          244 CLESIKAHEDAVNAVAVSAGGTVYT--GSADRKIRVWAKPFNEK-----------RHAL-IATLEKHKSAVNALALSDDG  309 (437)
Q Consensus       244 ~~~~~~~~~~~v~~~~~~~~~~l~~--~~~dg~v~iwd~~~~~~-----------~~~~-~~~~~~~~~~i~~~~~~~~~  309 (437)
                      .+..+..   ....+++++ ..+++  |+.||.|++||+.....           ...+ +..+.+|...|.+++|+|+|
T Consensus       132 ~~~~~~~---~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g  207 (355)
T 3vu4_A          132 RITDDIR---FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS  207 (355)
T ss_dssp             BSSCCEE---EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS
T ss_pred             eeEEecc---CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC
Confidence            6666654   344556666 45554  68899999999975320           0012 66788999999999999999


Q ss_pred             CEEEEEeCCCc-EEEEECCCCccceEEeeeec-c-cccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeee--
Q 013717          310 TVLFSGACDRS-ILVWDREDSANHMVVTGALR-G-HGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVL--  382 (437)
Q Consensus       310 ~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~--  382 (437)
                      ++|++|+.||+ |++||+++++..    ..+. + |...|.+++|+++  +|++++.|++|++||++..... ....+  
T Consensus       208 ~~l~s~s~d~~~v~iwd~~~~~~~----~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~-~~~~~~~  282 (355)
T 3vu4_A          208 DMVATCSQDGTIIRVFKTEDGVLV----REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDN-KRHALKG  282 (355)
T ss_dssp             SEEEEEETTCSEEEEEETTTCCEE----EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCC-CSEETTT
T ss_pred             CEEEEEeCCCCEEEEEECCCCcEE----EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCc-ccccccc
Confidence            99999999998 999999987643    3344 4 8899999998865  9999999999999999765311 11111  


Q ss_pred             -------------------cCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCC
Q 013717          383 -------------------EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNS  427 (437)
Q Consensus       383 -------------------~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  427 (437)
                                         ..+......++|++++     .+|++++.||.+++|++..+....
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~-----~~l~~~~~dg~~~~~~~~~~~~~~  341 (355)
T 3vu4_A          283 WINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISES-----SLVVVWPHTRMIETFKVVFDDEME  341 (355)
T ss_dssp             TEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSS-----EEEEEETTTTEEEEEEEEEETTTT
T ss_pred             eeeccccccccceeEEEeccCCCCCceEEEEeCCC-----CEEEEEeCCCeEEEEEEEcCCCCc
Confidence                               1122334778999988     489999999999999998876544

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-34  Score=267.21  Aligned_cols=268  Identities=13%  Similarity=0.092  Sum_probs=199.5

Q ss_pred             cceeeeecCccCCeEEEEee--C---------CEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--
Q 013717           88 LCINSVQLGHKLPIGCIAVH--H---------NFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--  154 (437)
Q Consensus        88 ~~~~~~~~~h~~~V~~l~~~--~---------~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--  154 (437)
                      ...+...+.+.+.|.+|+|+  +         ++||+|+.+...     .                      ..+++.  
T Consensus       123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----~----------------------~~~~~~~~  175 (524)
T 2j04_B          123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----E----------------------PLNEHLEM  175 (524)
T ss_dssp             CCSCEEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC---------------------------------------
T ss_pred             CCcceEEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccC-----C----------------------ccchhhhh
Confidence            34444455678999999998  5         799998865110     0                      013333  


Q ss_pred             EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--------CeEE
Q 013717          155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--------GLIY  226 (437)
Q Consensus       155 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~l~  226 (437)
                      +++++.|++|+|||+.+++.....                          ...+.+|.+.|.+++|+|        .+|+
T Consensus       176 laS~s~D~tI~iWd~~~~~~~~~~--------------------------~~~l~~~~~~V~~v~wsp~~~~~~~~~~LA  229 (524)
T 2j04_B          176 FDKEKHSSCIQIFKMNTSTLHCVK--------------------------VQTIVHSFGEVWDLKWHEGCHAPHLVGCLS  229 (524)
T ss_dssp             ------CEEEEEEEEETTTCCEEE--------------------------EEEEEECCCSEEEEEECSSCCCSSSSCEEE
T ss_pred             hccCCCCceEEEEEccCCCCCceE--------------------------EEEEEecCCcEEEEEECCCCCCCCCCceEE
Confidence            889999999999999766421100                          012235788999999987        3899


Q ss_pred             EEECCCcEEEEECCCcce-----------EEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeC
Q 013717          227 SVSWDKSLKIWRASDLRC-----------LESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEK  295 (437)
Q Consensus       227 ~~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  295 (437)
                      +++.||+|++||+.+++.           ...+.+|...|++++|++++.|++|+.||+|++||++...   .+...+.+
T Consensus       230 s~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~---~~~~~~~~  306 (524)
T 2j04_B          230 FVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPE---VPSFYDQV  306 (524)
T ss_dssp             EEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCS---SCSEEEEC
T ss_pred             EEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCC---CceEEeec
Confidence            999999999999987642           2356788999999999988779999999999999997542   23455778


Q ss_pred             ccccEEEE--EEccCC-CEEEEEeCCCcEEEEECCCCccceEEeeeecccc--cceEEEEeeC--CEEEEEeCCCcEEEe
Q 013717          296 HKSAVNAL--ALSDDG-TVLFSGACDRSILVWDREDSANHMVVTGALRGHG--KAILCLINVA--GLLMSGSADRTVRIW  368 (437)
Q Consensus       296 ~~~~i~~~--~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~i~~~~~~~--~~l~~~~~dg~i~iw  368 (437)
                      |...|.++  +|+|+| ++|++|+.|++|+|||+++++....+.    +|.  ..+.+++|++  ..+++++.|++|++|
T Consensus       307 H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~----~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lw  382 (524)
T 2j04_B          307 HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV----SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAV  382 (524)
T ss_dssp             SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE----EECSCCSCCCEEEETTTTEEEEECSSSEEEEE
T ss_pred             ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc----cccccCcccceEeCCCcCeEEEeCCCCcEEEE
Confidence            99999999  578888 899999999999999998765444333    333  2355666665  489999999999999


Q ss_pred             eCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          369 QRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       369 d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      |++.+.   ++..+.+|.+.|++|+|+|++.     +|++|+.||+|++|++...
T Consensus       383 d~~~~~---~~~~l~gH~~~V~sva~Sp~g~-----~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          383 PSRAAF---AVHPLVSRETTITAIGVSRLHP-----MVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             ETTCTT---CCEEEEECSSCEEEEECCSSCC-----BCEEEETTTEEECCBSCSS
T ss_pred             ECcccc---cceeeecCCCceEEEEeCCCCC-----eEEEEECCCEEEEEechHh
Confidence            999866   6677889999999999999885     7999999999999998654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2e-32  Score=246.26  Aligned_cols=270  Identities=13%  Similarity=0.123  Sum_probs=220.3

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcc--eeeeec-CccCCeEEEEee--CC-EEEEEecC-eEEEEeC-CCCceee
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLC--INSVQL-GHKLPIGCIAVH--HN-FLYAASSH-EINVYDR-TGTTWTS  131 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~--~~~~~~-~h~~~V~~l~~~--~~-~l~s~~~d-~v~vwd~-~~~~~~~  131 (437)
                      .++.+.|....+++.+.||.|.+|+.....  .....+ +|...|.+++|+  ++ +|++|+.| .|++||+ .++..  
T Consensus        15 ~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~--   92 (342)
T 1yfq_A           15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF--   92 (342)
T ss_dssp             EEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE--
T ss_pred             EEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce--
Confidence            467889999999999999999999996654  223333 999999999999  88 99999999 9999999 87533  


Q ss_pred             eeccccCCC--CcccEEEEEEeC-CeEEEEecCCeEEEEeCCC---------CcccccccccCccccceeeecCCCCeeE
Q 013717          132 INTFNDNDS--SSGSVKSVTFCD-GKIFTAHQDCKIRVWQLTP---------TKHHKLKTTLPTVNDRLLRFMLPNSYVT  199 (437)
Q Consensus       132 ~~~~~~~~~--h~~~v~~l~~~~-~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (437)
                       ..+   .+  |...|.+++|++ +.+++++.|+.|++||+.+         ++....+                     
T Consensus        93 -~~~---~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---------------------  147 (342)
T 1yfq_A           93 -QAL---TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT---------------------  147 (342)
T ss_dssp             -EEC---BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS---------------------
T ss_pred             -Eec---cccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEE---------------------
Confidence             222   46  999999999996 3399999999999999875         3222211                     


Q ss_pred             EeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCC-cce--EEEeecccccEEEEEEec-CCe-EEEEeCCCe
Q 013717          200 VRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASD-LRC--LESIKAHEDAVNAVAVSA-GGT-VYTGSADRK  274 (437)
Q Consensus       200 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~--~~~~~~~~~~v~~~~~~~-~~~-l~~~~~dg~  274 (437)
                                .|...|.+++++++.+++++.|+.|++||+++ +..  ......+...|.+++|+| ++. +++++.||.
T Consensus       148 ----------~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~  217 (342)
T 1yfq_A          148 ----------KVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR  217 (342)
T ss_dssp             ----------SSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred             ----------eeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc
Confidence                      27889999999997799999999999999988 543  334446788999999999 888 999999999


Q ss_pred             EEEecCCCC--cccceeeEEeeCccc---------cEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccc-
Q 013717          275 IRVWAKPFN--EKRHALIATLEKHKS---------AVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH-  342 (437)
Q Consensus       275 v~iwd~~~~--~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-  342 (437)
                      |++|+++..  .........+..|..         .|.+++|+|++++|++++.||.|++||+.+++    ....+.+| 
T Consensus       218 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~h  293 (342)
T 1yfq_A          218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK----KIKNFAKFN  293 (342)
T ss_dssp             EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE----EEEECCCCS
T ss_pred             EEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh----Hhhhhhccc
Confidence            999998765  111234556666654         99999999999999999999999999998775    44456777 


Q ss_pred             ccceEEEEeeCCEEEEEeCCCc-EEEeeC
Q 013717          343 GKAILCLINVAGLLMSGSADRT-VRIWQR  370 (437)
Q Consensus       343 ~~~i~~~~~~~~~l~~~~~dg~-i~iwd~  370 (437)
                      ...|.+++.++.+|++++.||. .+.|..
T Consensus       294 ~~~v~~~~~~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          294 EDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             SSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             CCCceEecCCCCeEEEEecCCcccccccc
Confidence            8999998866779999999998 666654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.9e-31  Score=237.34  Aligned_cols=267  Identities=22%  Similarity=0.295  Sum_probs=214.3

Q ss_pred             eeeccccccccccCCCceeEEecCCCccee-eeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccc
Q 013717           62 LQTLPSVPSLQKLSPDETINFSSASHLCIN-SVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFN  136 (437)
Q Consensus        62 ~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~-~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~  136 (437)
                      +..++. . +++++.|++|++|+....... ...+ +|...|.+++|+  +++|++|+.| .|++||++++  +.+..+ 
T Consensus        31 l~WS~~-~-~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~--~~~~~~-  105 (318)
T 4ggc_A           31 VDWSSG-N-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--KRLRNM-  105 (318)
T ss_dssp             EEECTT-S-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEE-
T ss_pred             EEECCC-C-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc--eeEEEe-
Confidence            455544 2 555678999999998764332 2233 789999999999  8999999999 9999999995  444444 


Q ss_pred             cCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717          137 DNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT  216 (437)
Q Consensus       137 ~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  216 (437)
                        .+|...+.++.+.+..+++++.++.+++|+........                             ..+.+|...+.
T Consensus       106 --~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~  154 (318)
T 4ggc_A          106 --TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHV-----------------------------ATLSGHSQEVC  154 (318)
T ss_dssp             --ECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEE-----------------------------EEEECCSSCEE
T ss_pred             --cCccceEEEeecCCCEEEEEecCCceEeeecCCCceeE-----------------------------EEEcCccCceE
Confidence              57999999999999889999999999999987654221                             22346899999


Q ss_pred             EEEeCC--CeEEEEECCCcEEEEECCCcce----EEEeecccccEEEEEEecCCe----EEEEeCCCeEEEecCCCCccc
Q 013717          217 GLAVNN--GLIYSVSWDKSLKIWRASDLRC----LESIKAHEDAVNAVAVSAGGT----VYTGSADRKIRVWAKPFNEKR  286 (437)
Q Consensus       217 ~~~~~~--~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~----l~~~~~dg~v~iwd~~~~~~~  286 (437)
                      .+.+.+  .++++++.||.|++||+++++.    ......+...|.+++++|++.    +++++.++.|++||.....  
T Consensus       155 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~--  232 (318)
T 4ggc_A          155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA--  232 (318)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC--
T ss_pred             EEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc--
Confidence            999988  8999999999999999988753    344456788999999998775    3466788999999986543  


Q ss_pred             ceeeEEeeCccccEEEEEEccCCCEEEEEe--CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCC
Q 013717          287 HALIATLEKHKSAVNALALSDDGTVLFSGA--CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSAD  362 (437)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~d  362 (437)
                        .. ....+...+..+.|+|+++.+++++  .|+.|++||+++++    ....+.+|...|.+++++++  +|++|+.|
T Consensus       233 --~~-~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~----~~~~l~gH~~~V~~l~~spdg~~l~S~s~D  305 (318)
T 4ggc_A          233 --CL-SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA----KVAELKGHTSRVLSLTMSPDGATVASAAAD  305 (318)
T ss_dssp             --EE-EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             --cc-ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEcCCCCEEEEEecC
Confidence              22 2334677899999999999887755  79999999998876    45567889999999998755  99999999


Q ss_pred             CcEEEeeCCCC
Q 013717          363 RTVRIWQRGSD  373 (437)
Q Consensus       363 g~i~iwd~~~~  373 (437)
                      |+|+|||+...
T Consensus       306 ~~v~iWd~~~~  316 (318)
T 4ggc_A          306 ETLRLWRCFEL  316 (318)
T ss_dssp             TEEEEECCSCC
T ss_pred             CeEEEEECCCC
Confidence            99999999764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.2e-32  Score=250.99  Aligned_cols=313  Identities=16%  Similarity=0.216  Sum_probs=212.1

Q ss_pred             ccceeecc-ccccccccCCCceeEEecCCCcceeeeec-------------CccCCeEEEEee---CCEEEEEecC-eEE
Q 013717           59 NLSLQTLP-SVPSLQKLSPDETINFSSASHLCINSVQL-------------GHKLPIGCIAVH---HNFLYAASSH-EIN  120 (437)
Q Consensus        59 ~~~~~~~~-~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-------------~h~~~V~~l~~~---~~~l~s~~~d-~v~  120 (437)
                      ...+.+.| ....+++++.||.|.+|+...........             +|...|.+++|+   +++|++++.| .|+
T Consensus        46 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~  125 (408)
T 4a11_B           46 INTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLK  125 (408)
T ss_dssp             EEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEE
T ss_pred             EEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEE
Confidence            35788999 89999999999999999996543322221             499999999998   5799999999 999


Q ss_pred             EEeCCCCceeeeeccccCCCCcccEEEEEEeC---C--eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCC
Q 013717          121 VYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD---G--KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPN  195 (437)
Q Consensus       121 vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (437)
                      +||+.+++  ....+    .+...+.++.+.+   +  .+++++.||.|++||+.+++....+                 
T Consensus       126 iwd~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-----------------  182 (408)
T 4a11_B          126 VWDTNTLQ--TADVF----NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL-----------------  182 (408)
T ss_dssp             EEETTTTE--EEEEE----ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE-----------------
T ss_pred             EeeCCCCc--cceec----cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee-----------------
Confidence            99999853  33333    2678899999984   2  3999999999999999877543322                 


Q ss_pred             CeeEEeeccceeeecCCCcEEEEEeCC--C-eEEEEECCCcEEEEECCCcc-eEEEe---------------ecccccEE
Q 013717          196 SYVTVRRHKKKLWIEHGDAVTGLAVNN--G-LIYSVSWDKSLKIWRASDLR-CLESI---------------KAHEDAVN  256 (437)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~-~~~~~---------------~~~~~~v~  256 (437)
                                   ..|...|.+++|+|  . ++++++.||.|++||+++++ .+..+               ..|...|.
T Consensus       183 -------------~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  249 (408)
T 4a11_B          183 -------------QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN  249 (408)
T ss_dssp             -------------CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred             -------------cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence                         35899999999998  4 68999999999999998765 34443               46888999


Q ss_pred             EEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEe-eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceE
Q 013717          257 AVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATL-EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMV  334 (437)
Q Consensus       257 ~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  334 (437)
                      +++|+|++. |++++.||.|++||+............. ......+........+..+++++.|+.|++||+.+++    
T Consensus       250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~----  325 (408)
T 4a11_B          250 GLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE----  325 (408)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC----
T ss_pred             EEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCc----
Confidence            999999998 9999999999999998654322111111 1111222222233345567777889999999998876    


Q ss_pred             EeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC
Q 013717          335 VTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD  412 (437)
Q Consensus       335 ~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d  412 (437)
                      ....+.+|...|.+++++++  +|++++.||.|++||+.+.+   .+.....+..   ...+.+...    ..+.+++.|
T Consensus       326 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~---~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~  395 (408)
T 4a11_B          326 QITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE---PVPDDDETTT---KSQLNPAFE----DAWSSSDEE  395 (408)
T ss_dssp             EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----------------------------------------
T ss_pred             ceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC---ccCCCCceEe---ccccccccc----eeecccCcc
Confidence            44556789999999988865  99999999999999999866   3333332221   123333332    256778889


Q ss_pred             CcEEEEeec
Q 013717          413 GEIRAWQVS  421 (437)
Q Consensus       413 g~i~iw~~~  421 (437)
                      +.+++|+..
T Consensus       396 ~~~~~W~~~  404 (408)
T 4a11_B          396 GGTSAWSHP  404 (408)
T ss_dssp             ---------
T ss_pred             CceeecCCc
Confidence            999999865

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-31  Score=250.31  Aligned_cols=286  Identities=13%  Similarity=0.137  Sum_probs=218.7

Q ss_pred             cCCeEEEEee--CCEEEEEecCeEEEEeCCCCce-eeeecccc-------------------------------------
Q 013717           98 KLPIGCIAVH--HNFLYAASSHEINVYDRTGTTW-TSINTFND-------------------------------------  137 (437)
Q Consensus        98 ~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~-~~~~~~~~-------------------------------------  137 (437)
                      ..+|.+++|+  |++|+++..+.|++||+.+++. ..+..+..                                     
T Consensus         4 ~~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            4678999998  8877777655999999988751 11221110                                     


Q ss_pred             --------------CCCCcccEEEEEEeCCe--E-EEEecCCeEEEEeCC--CCcccccccccCccccceeeecCCCCee
Q 013717          138 --------------NDSSSGSVKSVTFCDGK--I-FTAHQDCKIRVWQLT--PTKHHKLKTTLPTVNDRLLRFMLPNSYV  198 (437)
Q Consensus       138 --------------~~~h~~~v~~l~~~~~~--l-~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (437)
                                    ..+|.+.|.+++|+++.  | ++++.||.|++||+.  +++....+..                  
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~------------------  145 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR------------------  145 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE------------------
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec------------------
Confidence                          01355579999999775  4 788899999999998  6654333221                  


Q ss_pred             EEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEE----EeecccccEEEEEEecC---Ce-EEE
Q 013717          199 TVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLE----SIKAHEDAVNAVAVSAG---GT-VYT  268 (437)
Q Consensus       199 ~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~---~~-l~~  268 (437)
                                ..|...|.+++|+|  .+|++|+.+|.|++|++.+++...    .+.+|...|++++|+|+   +. |++
T Consensus       146 ----------~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s  215 (450)
T 2vdu_B          146 ----------FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIIT  215 (450)
T ss_dssp             ----------EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEE
T ss_pred             ----------ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEE
Confidence                      14778999999998  899999999999999998876544    67789999999999999   87 999


Q ss_pred             EeCCCeEEEecCCCCcccceeeEE-eeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeee--------
Q 013717          269 GSADRKIRVWAKPFNEKRHALIAT-LEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGAL--------  339 (437)
Q Consensus       269 ~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------  339 (437)
                      |+.|+.|++||++...    .+.. +.+|...|.+++|+ ++++|++++.|+.|++||+++++....+....        
T Consensus       216 ~~~d~~i~vwd~~~~~----~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  290 (450)
T 2vdu_B          216 SDRDEHIKISHYPQCF----IVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLND  290 (450)
T ss_dssp             EETTSCEEEEEESCTT----CEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCT
T ss_pred             EcCCCcEEEEECCCCc----eeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhh
Confidence            9999999999987543    3444 55799999999999 99999999999999999999876544332110        


Q ss_pred             -------------cccccceEEEEeeC--CEEEEEe-CCCcEEEeeC--CCCCCeeeeeeecCCCCCeeEEEEEccCCCC
Q 013717          340 -------------RGHGKAILCLINVA--GLLMSGS-ADRTVRIWQR--GSDGRFGCLAVLEGHTKPVKSLTAVTEEGQN  401 (437)
Q Consensus       340 -------------~~~~~~i~~~~~~~--~~l~~~~-~dg~i~iwd~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  401 (437)
                                   ......+.++.+.+  .+|++++ .|+.|++|++  ..+.....+..+..| +.|.+++|+|++   
T Consensus       291 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~---  366 (450)
T 2vdu_B          291 QHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE---  366 (450)
T ss_dssp             TSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE---
T ss_pred             cccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc---
Confidence                         02234567777764  4888888 8999999999  555555678888888 899999999954   


Q ss_pred             ceEEEEEecC-------CCcEEEEeeccC
Q 013717          402 GVVSVFSGSL-------DGEIRAWQVSVS  423 (437)
Q Consensus       402 ~~~~l~s~~~-------dg~i~iw~~~~~  423 (437)
                         ++++.+.       +..|.+|.++..
T Consensus       367 ---~~v~~~~~~~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          367 ---FQVTLDNKESSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             ---EEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred             ---EEEEEecccCCCCCCcceEEEEEEcC
Confidence               5555443       556899988754

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-32  Score=252.30  Aligned_cols=263  Identities=9%  Similarity=0.044  Sum_probs=206.2

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCC
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPT  172 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~  172 (437)
                      .-...|.+++|+  |+++|+++.| +|+  |.+.+     ..+   .+|...|.+++|+|++     .++.+.+|+.+  
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~-----~~l---~gh~~~v~~V~FsPdg-----~~~~~~~~~~~--   75 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA-----KDI---NCNSKNLFHVKEFPLE-----FENKLDFELAQ--   75 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC-----SCC---SSBGGGTEEEEEECCC-----CCCTTTTSCCC--
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--ccccc-----cee---cCCCccEEEEEECCCC-----CcceEEEEeCC--
Confidence            566899999999  9999999999 999  64442     233   5799999999999977     45555454433  


Q ss_pred             cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeec
Q 013717          173 KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKA  250 (437)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~  250 (437)
                       ....+.                             ..|...|.+++|+|  ..|++++.||.|++||.+.  ++..+. 
T Consensus        76 -~~~~~~-----------------------------~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-  122 (588)
T 2j04_A           76 -QNGLLN-----------------------------SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-  122 (588)
T ss_dssp             -SSCSST-----------------------------TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-
T ss_pred             -CceEee-----------------------------cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-
Confidence             222221                             13678899999999  8899999999999999644  666666 


Q ss_pred             ccc-----cEEEEEEecCCe-EEEEeCCCeEEEecCCCCccc---ceeeEEe----eCccccEEEEEEccCCCEEEEEeC
Q 013717          251 HED-----AVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKR---HALIATL----EKHKSAVNALALSDDGTVLFSGAC  317 (437)
Q Consensus       251 ~~~-----~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~---~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~  317 (437)
                      |..     .|.+++|+|||+ |++|+.||+|++||+..+...   .-.+..+    .+|...|.+++|+|||  +++++.
T Consensus       123 ~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~  200 (588)
T 2j04_A          123 SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS  200 (588)
T ss_dssp             CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET
T ss_pred             CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC
Confidence            554     599999999999 999999999999998764311   1134555    5677899999999999  888899


Q ss_pred             CCcEEEEECCCCccceEEeeee-cccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEE--
Q 013717          318 DRSILVWDREDSANHMVVTGAL-RGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTA--  394 (437)
Q Consensus       318 dg~i~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~--  394 (437)
                      |+.|++||+....... ....+ .+|...|.+++|+++.||+++ +++|++||+.++.   ......+|.+.|..++|  
T Consensus       201 D~tVrlWd~~~~~~~~-~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~---~~~~~~gh~~~V~~va~~~  275 (588)
T 2j04_A          201 NNSVFSMTVSASSHQP-VSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYS---ISSLKTGSLENFHIIPLNH  275 (588)
T ss_dssp             TCCEEEECCCSSSSCC-CEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTE---EEEEECSCCSCCCEEEETT
T ss_pred             CCeEEEEECCCCcccc-ceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCe---EEEEEcCCCceEEEEEeee
Confidence            9999999998765321 11223 368889999999878999887 6999999999755   32333389999999999  


Q ss_pred             EccCCCCceEEEEEecCCCcEEEEeec
Q 013717          395 VTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       395 ~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      +|++     +.|++++.||+ ++|.++
T Consensus       276 s~d~-----~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          276 EKES-----TILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             CSSC-----EEEEECSSCEE-EEEESS
T ss_pred             CCCC-----CEEEEEcCCCC-EEEeec
Confidence            8887     58999999999 999975

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-33  Score=257.93  Aligned_cols=278  Identities=13%  Similarity=0.153  Sum_probs=214.3

Q ss_pred             ccceeecc-ccccccccCCCceeEEecCCC---cc--eeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCC---C
Q 013717           59 NLSLQTLP-SVPSLQKLSPDETINFSSASH---LC--INSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRT---G  126 (437)
Q Consensus        59 ~~~~~~~~-~~~~~~s~s~dg~i~~~~~~~---~~--~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~---~  126 (437)
                      ..++.+.| ....+++++.||+|++|+...   ..  .....++|...|.+++|+  +++|++|+.| .|++||+.   .
T Consensus        66 V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~  145 (437)
T 3gre_A           66 ITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQ  145 (437)
T ss_dssp             EEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEE
T ss_pred             eEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccC
Confidence            35788999 889999999999999999854   22  223344899999999998  8999999999 99999995   3


Q ss_pred             Ccee------eeeccccC-CCCcccEEEEEEe--CCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCC
Q 013717          127 TTWT------SINTFNDN-DSSSGSVKSVTFC--DGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPN  195 (437)
Q Consensus       127 ~~~~------~~~~~~~~-~~h~~~v~~l~~~--~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (437)
                      ++..      .+..+... .++...+.++.+.  ++.  |++++.||.|++||+++++....+...              
T Consensus       146 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------------  211 (437)
T 3gre_A          146 ESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS--------------  211 (437)
T ss_dssp             TTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC--------------
T ss_pred             CceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC--------------
Confidence            2111      11111100 1156778888754  443  999999999999999987654433311              


Q ss_pred             CeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee-cccccEEEEEEe----cCCe-EE
Q 013717          196 SYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK-AHEDAVNAVAVS----AGGT-VY  267 (437)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~----~~~~-l~  267 (437)
                                    .|...|++++|++  .+|++|+.||.|++||+++++++..+. .|...|.+++++    +++. ++
T Consensus       212 --------------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~  277 (437)
T 3gre_A          212 --------------PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV  277 (437)
T ss_dssp             --------------GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEE
T ss_pred             --------------CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEE
Confidence                          1788999999988  899999999999999999999999886 778899999665    4676 99


Q ss_pred             EEeCCCeEEEecCCCCcccceeeEEee------------------------C--ccccEEEEEEccCCCEEEEEeCCCcE
Q 013717          268 TGSADRKIRVWAKPFNEKRHALIATLE------------------------K--HKSAVNALALSDDGTVLFSGACDRSI  321 (437)
Q Consensus       268 ~~~~dg~v~iwd~~~~~~~~~~~~~~~------------------------~--~~~~i~~~~~~~~~~~l~~~~~dg~i  321 (437)
                      +|+.||.|++||++...    .+..+.                        +  |...|.+++|+ ++++|++|+.||.|
T Consensus       278 s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i  352 (437)
T 3gre_A          278 GGSSKTFLTIWNFVKGH----CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSI  352 (437)
T ss_dssp             EESTTEEEEEEETTTTE----EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEE
T ss_pred             EEcCCCcEEEEEcCCCc----EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeE
Confidence            99999999999987544    222232                        2  66778999999 77899999999999


Q ss_pred             EEEECCCCccceEEeee---------------------------------ecccccceEEEEeeCC----EEEEEeCCCc
Q 013717          322 LVWDREDSANHMVVTGA---------------------------------LRGHGKAILCLINVAG----LLMSGSADRT  364 (437)
Q Consensus       322 ~i~d~~~~~~~~~~~~~---------------------------------~~~~~~~i~~~~~~~~----~l~~~~~dg~  364 (437)
                      ++||+.+++....+...                                 ...|...|.++.+.+.    +|++|+.||.
T Consensus       353 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~  432 (437)
T 3gre_A          353 VMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGL  432 (437)
T ss_dssp             EEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSC
T ss_pred             EEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCce
Confidence            99999987655444321                                 1238889999887654    9999999999


Q ss_pred             EEEee
Q 013717          365 VRIWQ  369 (437)
Q Consensus       365 i~iwd  369 (437)
                      |+||+
T Consensus       433 I~iw~  437 (437)
T 3gre_A          433 IGIFQ  437 (437)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99995

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.4e-32  Score=251.42  Aligned_cols=279  Identities=15%  Similarity=0.169  Sum_probs=216.7

Q ss_pred             eeecccccc-ccccCCCceeEEecCCCcce---eeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCce---
Q 013717           62 LQTLPSVPS-LQKLSPDETINFSSASHLCI---NSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTW---  129 (437)
Q Consensus        62 ~~~~~~~~~-~~s~s~dg~i~~~~~~~~~~---~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~---  129 (437)
                      +.+.|.... +++.+.||.|.+|+......   ....+ +|.+.|.+++|+   +++|++|+.| .|++||+.++..   
T Consensus        40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~  119 (402)
T 2aq5_A           40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP  119 (402)
T ss_dssp             EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC
T ss_pred             EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc
Confidence            455665554 44578899999999866543   34455 999999999997   7899999999 999999988532   


Q ss_pred             --eeeeccccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeecc
Q 013717          130 --TSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHK  204 (437)
Q Consensus       130 --~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (437)
                        ..+..+   .+|...|.+++|+++.   |++++.||.|++||+.+++....+..                        
T Consensus       120 ~~~~~~~~---~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------  172 (402)
T 2aq5_A          120 LREPVITL---EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP------------------------  172 (402)
T ss_dssp             BCSCSEEE---ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT------------------------
T ss_pred             cCCceEEe---cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec------------------------
Confidence              223333   5799999999999663   99999999999999998764433310                        


Q ss_pred             ceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEe-eccccc-EEEEEEecCCe-EEEE---eCCCeEE
Q 013717          205 KKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESI-KAHEDA-VNAVAVSAGGT-VYTG---SADRKIR  276 (437)
Q Consensus       205 ~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~-v~~~~~~~~~~-l~~~---~~dg~v~  276 (437)
                          ..|...|.+++|++  .+|++++.||.|++||+++++.+..+ ..|.+. +.+++|+|++. +++|   +.|+.|+
T Consensus       173 ----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~  248 (402)
T 2aq5_A          173 ----DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVA  248 (402)
T ss_dssp             ----TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEE
T ss_pred             ----CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEE
Confidence                24889999999998  89999999999999999999999888 677765 89999999999 7777   6899999


Q ss_pred             EecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEE-EeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCE
Q 013717          277 VWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFS-GACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGL  355 (437)
Q Consensus       277 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  355 (437)
                      +||++.......  .....+...+.+++|+|++++|++ |+.||.|++||+.+++........+. |...+.+++++++.
T Consensus       249 iwd~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~  325 (402)
T 2aq5_A          249 LWDTKHLEEPLS--LQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKR  325 (402)
T ss_dssp             EEETTBCSSCSE--EEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGG
T ss_pred             EEcCccccCCce--EEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEeccc
Confidence            999976442111  112246778999999999999864 55799999999998764333333333 66888888888772


Q ss_pred             EEEEeCCCcEEEeeCCCCC
Q 013717          356 LMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       356 l~~~~~dg~i~iwd~~~~~  374 (437)
                      .+.++.++.+++|++.++.
T Consensus       326 ~~~~s~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          326 GLEVNKCEIARFYKLHERK  344 (402)
T ss_dssp             GSCGGGTEEEEEEEEETTE
T ss_pred             ccceecceeEEEEEcCCCc
Confidence            2233567799999998754

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=9.9e-32  Score=231.73  Aligned_cols=280  Identities=13%  Similarity=0.121  Sum_probs=194.9

Q ss_pred             eEEEEee--C---CEEEEEecCeEEEEeCCCC-ceeeeeccccCCCCcccEEEEEEeCCe--EEEEec-C-CeEEEEeCC
Q 013717          101 IGCIAVH--H---NFLYAASSHEINVYDRTGT-TWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQ-D-CKIRVWQLT  170 (437)
Q Consensus       101 V~~l~~~--~---~~l~s~~~d~v~vwd~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~-d-g~i~iwd~~  170 (437)
                      +.++-|-  +   -.++++++..|++|+..++ .++.+.++   ..|+.+|..+.+.|+.  |+.... + ..-.++-+.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla  118 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTW---HFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF  118 (356)
T ss_dssp             EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEE---ECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred             EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEE---eccCceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence            4555554  2   3688888889999999885 45777777   6788899999999864  332221 1 111111111


Q ss_pred             CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEE---CCCcEEEEEC-CCcceEE
Q 013717          171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVS---WDKSLKIWRA-SDLRCLE  246 (437)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~---~dg~i~iwd~-~~~~~~~  246 (437)
                      -...-...                 ......       .+|...|..+  ....++..+   .|+.|++|++ .+++.+.
T Consensus       119 ~spd~~~~-----------------~~~l~s-------~g~~~~v~~l--~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~  172 (356)
T 2w18_A          119 CSSDDESE-----------------KQVLLK-------SGNIKAVLGL--TKRRLVSSSGTLSDQQVEVMTFAEDGGGKE  172 (356)
T ss_dssp             C------C-----------------CEEEEE-------EEEEEEEEEE--TTTEEEEEESSSTTCEEEEEEECTTSCEEE
T ss_pred             ECCCcccc-----------------ccEEEe-------CCCeEEEEec--CCCcEEEecccCCCCcEEEEEECCCCceee
Confidence            00000000                 000000       1233334443  445555554   5999999999 5588888


Q ss_pred             EeecccccEEEEEEec---CCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCcc---ccEEEEEEccCCCEE-------
Q 013717          247 SIKAHEDAVNAVAVSA---GGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHK---SAVNALALSDDGTVL-------  312 (437)
Q Consensus       247 ~~~~~~~~v~~~~~~~---~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l-------  312 (437)
                      .+..|...++.++|++   ++. |++|+.|++|+|||+.++.    .++++.+|.   ..+.+++|+|+|+++       
T Consensus       173 s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk----~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~  248 (356)
T 2w18_A          173 NQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ----LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPC  248 (356)
T ss_dssp             EEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC----EEEEEECCC---CCCEEEEEEETTEEEEEEC---
T ss_pred             eeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc----EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCC
Confidence            8889999999999998   556 9999999999999987654    667776543   367788999999876       


Q ss_pred             -----EEEeCCCcEEEEECCCCccceEEeee-ecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCC
Q 013717          313 -----FSGACDRSILVWDREDSANHMVVTGA-LRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHT  386 (437)
Q Consensus       313 -----~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~  386 (437)
                           ++|+.|++|++||..+++....+... ..+|...+.+..+++.++++|+.|++|+|||+.+++   ++.++.+|.
T Consensus       249 ~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk---~l~tL~gH~  325 (356)
T 2w18_A          249 AKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQ---CTALLPPVS  325 (356)
T ss_dssp             ---------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCS---EEEEECCC-
T ss_pred             CcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCc---EEEEecCCC
Confidence                 56788999999999887644333221 246766677777778899999999999999999987   889999998


Q ss_pred             CCee-EEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          387 KPVK-SLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       387 ~~v~-~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      ..+. .++|+|++.     +|++|+.|++|||||+.
T Consensus       326 ~~vvs~vafSPDG~-----~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          326 DQHWSFVKWSGTDS-----HLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             -CCCCEEEECSSSS-----EEEEECTTSCEEEEEEC
T ss_pred             CCeEEEEEECCCCC-----EEEEEECCCcEEEecCC
Confidence            8765 589999984     89999999999999963

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=7.5e-32  Score=250.08  Aligned_cols=258  Identities=19%  Similarity=0.280  Sum_probs=205.2

Q ss_pred             CCCcccEEEEEEeCC-e--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcE
Q 013717          139 DSSSGSVKSVTFCDG-K--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV  215 (437)
Q Consensus       139 ~~h~~~v~~l~~~~~-~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  215 (437)
                      ..|.+.|++++|+++ .  |++++.||.|++|++...........                    .......+.+|...|
T Consensus       125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~--------------------~~~~~~~~~~h~~~v  184 (430)
T 2xyi_A          125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSG--------------------ECQPDLRLRGHQKEG  184 (430)
T ss_dssp             EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTC--------------------CCCCSEEEECCSSCC
T ss_pred             EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccc--------------------cCCCcEEecCCCCCe
Confidence            369999999999986 3  88999999999999975321100000                    001123345799999


Q ss_pred             EEEEeCC--C-eEEEEECCCcEEEEECCCcce-------EEEeecccccEEEEEEecC-Ce-EEEEeCCCeEEEecCCCC
Q 013717          216 TGLAVNN--G-LIYSVSWDKSLKIWRASDLRC-------LESIKAHEDAVNAVAVSAG-GT-VYTGSADRKIRVWAKPFN  283 (437)
Q Consensus       216 ~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~-~~-l~~~~~dg~v~iwd~~~~  283 (437)
                      .+++|++  . +|++|+.||.|++||+.++..       ...+..|...|.+++|+|+ +. |++++.||.|++||++..
T Consensus       185 ~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~  264 (430)
T 2xyi_A          185 YGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN  264 (430)
T ss_dssp             CCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS
T ss_pred             EEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence            9999998  4 999999999999999987322       3556689999999999994 44 889999999999999854


Q ss_pred             cccceeeEEeeCccccEEEEEEccCCC-EEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEE
Q 013717          284 EKRHALIATLEKHKSAVNALALSDDGT-VLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSG  359 (437)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~  359 (437)
                      . ....+..+..|...|++++|+|++. +|++|+.||.|++||++....   ....+.+|...|.++.++++   +|+++
T Consensus       265 ~-~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~---~~~~~~~h~~~v~~i~~sp~~~~~l~s~  340 (430)
T 2xyi_A          265 N-TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL---KLHSFESHKDEIFQVQWSPHNETILASS  340 (430)
T ss_dssp             C-SSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---CSEEEECCSSCEEEEEECSSCTTEEEEE
T ss_pred             C-CCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC---CeEEeecCCCCEEEEEECCCCCCEEEEE
Confidence            2 1234556678999999999999987 688999999999999987443   23345678999999999864   79999


Q ss_pred             eCCCcEEEeeCCCCCC-----------eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          360 SADRTVRIWQRGSDGR-----------FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       360 ~~dg~i~iwd~~~~~~-----------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      +.||.|+|||+.....           ..++..+.+|...|++++|+|++..    +|++++.||.|++|++....
T Consensus       341 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~----~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          341 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW----IICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             ETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTT----EEEEEETTSEEEEEEECHHH
T ss_pred             eCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCC----EEEEEECCCCEEEeEccccc
Confidence            9999999999986321           2467788899999999999999864    89999999999999997654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-32  Score=267.98  Aligned_cols=251  Identities=20%  Similarity=0.278  Sum_probs=205.4

Q ss_pred             eec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC--e--EEEEecCCeE
Q 013717           93 VQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG--K--IFTAHQDCKI  164 (437)
Q Consensus        93 ~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~--l~s~~~dg~i  164 (437)
                      ..+ +|.+.|++++|+  +++|++|+.| .|+|||+..+.......+   .+|.+.|.+++|+++  .  |++|+.||.|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l---~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I   79 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL---TGHEGPVWRVDWAHPKFGTILASCSYDGKV   79 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec---cCCcCceEEEEecCCCCCCEEEEEeCCCeE
Confidence            455 999999999999  8999999999 999999986556666666   689999999999854  3  9999999999


Q ss_pred             EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEEEECCCcEEEEECC
Q 013717          165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYSVSWDKSLKIWRAS  240 (437)
Q Consensus       165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~  240 (437)
                      ++||+.+++....                            ..+.+|...|.+++|+|    ..+++|+.||.|++||++
T Consensus        80 ~vwd~~~~~~~~~----------------------------~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~  131 (753)
T 3jro_A           80 LIWKEENGRWSQI----------------------------AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK  131 (753)
T ss_dssp             EEEEEETTEEEEE----------------------------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred             EEEECCCCccccc----------------------------ccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence            9999987642111                            12246999999999987    589999999999999998


Q ss_pred             Ccc--eEEEeecccccEEEEEEec-------------CCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEE
Q 013717          241 DLR--CLESIKAHEDAVNAVAVSA-------------GGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALA  304 (437)
Q Consensus       241 ~~~--~~~~~~~~~~~v~~~~~~~-------------~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~  304 (437)
                      ++.  ....+..|...|.+++|+|             ++. +++|+.||.|++||++...........+.+|...|.+++
T Consensus       132 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~  211 (753)
T 3jro_A          132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA  211 (753)
T ss_dssp             SSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred             cCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEE
Confidence            873  3455668999999999999             466 999999999999999877666677788889999999999


Q ss_pred             EccC---CCEEEEEeCCCcEEEEECCCCccceE-EeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCC
Q 013717          305 LSDD---GTVLFSGACDRSILVWDREDSANHMV-VTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       305 ~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~  374 (437)
                      |+|+   +++|++++.||.|++||++++..... .......|...+.+++++++  +|++|+.||.|++|++..+.
T Consensus       212 ~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          212 WSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             ECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             eccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            9999   89999999999999999987642211 22233457788887777654  99999999999999998644

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-32  Score=268.09  Aligned_cols=251  Identities=18%  Similarity=0.255  Sum_probs=209.4

Q ss_pred             CCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717          139 DSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT  216 (437)
Q Consensus       139 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  216 (437)
                      .+|.+.|++++|++++  |++|+.||.|++||+..+....                            ...+.+|...|.
T Consensus         6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~----------------------------~~~l~~h~~~V~   57 (753)
T 3jro_A            6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKL----------------------------IDTLTGHEGPVW   57 (753)
T ss_dssp             --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEE----------------------------EEEECCCSSCEE
T ss_pred             ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCcc----------------------------ceeccCCcCceE
Confidence            6899999999999765  9999999999999987432111                            122346999999


Q ss_pred             EEEeCC----CeEEEEECCCcEEEEECCCcc--eEEEeecccccEEEEEEecC--Ce-EEEEeCCCeEEEecCCCCcccc
Q 013717          217 GLAVNN----GLIYSVSWDKSLKIWRASDLR--CLESIKAHEDAVNAVAVSAG--GT-VYTGSADRKIRVWAKPFNEKRH  287 (437)
Q Consensus       217 ~~~~~~----~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~-l~~~~~dg~v~iwd~~~~~~~~  287 (437)
                      +++|++    +++++|+.||.|++||+.+++  .+..+..|...|++++|+|+  +. +++|+.||.|++||++....  
T Consensus        58 ~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~--  135 (753)
T 3jro_A           58 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--  135 (753)
T ss_dssp             EEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC--
T ss_pred             EEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC--
Confidence            999974    789999999999999999886  66777789999999999998  77 99999999999999976532  


Q ss_pred             eeeEEeeCccccEEEEEEcc-------------CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC-
Q 013717          288 ALIATLEKHKSAVNALALSD-------------DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA-  353 (437)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  353 (437)
                      .....+.+|...|.+++|+|             ++.+|++|+.||.|++||++++.........+.+|...|.++.+++ 
T Consensus       136 ~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  215 (753)
T 3jro_A          136 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT  215 (753)
T ss_dssp             CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred             cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccC
Confidence            23345678999999999999             5899999999999999999987766667777889999999999874 


Q ss_pred             ----CEEEEEeCCCcEEEeeCCCCCCe--eeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          354 ----GLLMSGSADRTVRIWQRGSDGRF--GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       354 ----~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                          .+|++|+.||.|++||+.++...  ..+.....|...|++++|+|++.     +|++++.||.|++|++..+.
T Consensus       216 ~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-----~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          216 VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-----VLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             CSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC-----CEEEECSSSCEECCBCCSSS
T ss_pred             CCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCC-----EEEEEcCCCEEEEEecCCCC
Confidence                48999999999999999876421  13344456899999999999885     79999999999999998543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=6.8e-32  Score=247.12  Aligned_cols=233  Identities=11%  Similarity=0.080  Sum_probs=168.4

Q ss_pred             EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----------Ce
Q 013717          155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----------GL  224 (437)
Q Consensus       155 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------~~  224 (437)
                      +++++.|++|++||.++++......                         ...+.+|.+.|++++|+|          ++
T Consensus       104 las~~~d~~v~lw~~~~~~~~~~~~-------------------------~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~  158 (393)
T 4gq1_A          104 LACVCQDNTVRLIITKNETIITQHV-------------------------LGGKSGHHNFVNDIDIADVYSADNRLAEQV  158 (393)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEE-------------------------ECTTTSCSSCEEEEEEEEEECTTCSEEEEE
T ss_pred             EEEEeCCCcEEEEECCCCccceeee-------------------------ecccCCCCCceEEEEEccccccccCCCCCE
Confidence            8999999999999998775332110                         112247999999999974          68


Q ss_pred             EEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceee------------
Q 013717          225 IYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALI------------  290 (437)
Q Consensus       225 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~------------  290 (437)
                      |++|+.|++|+|||+.++.++..+..|...|.+++|+|++.  |++|+.||.|++||++.........            
T Consensus       159 las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s  238 (393)
T 4gq1_A          159 IASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLT  238 (393)
T ss_dssp             EEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEE
T ss_pred             EEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEe
Confidence            99999999999999998888888888999999999999874  9999999999999997654321111            


Q ss_pred             ---------EEeeCccccEEEEEEc-cCCCEEEEEeCCCcEEEEECCCCccceEEeee---------------ecccccc
Q 013717          291 ---------ATLEKHKSAVNALALS-DDGTVLFSGACDRSILVWDREDSANHMVVTGA---------------LRGHGKA  345 (437)
Q Consensus       291 ---------~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------------~~~~~~~  345 (437)
                               ....+|...+.++.|+ |+|+.|++++.|+++++||+..++....+...               ...+...
T Consensus       239 ~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  318 (393)
T 4gq1_A          239 LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSL  318 (393)
T ss_dssp             EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCS
T ss_pred             cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcc
Confidence                     1123567788899987 79999999999999999999865432221110               0011111


Q ss_pred             eEEEEee--CC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          346 ILCLINV--AG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       346 i~~~~~~--~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      +....+.  +. ++++|+.||.|++||+.+++   ++..+.+|..+|.+++|+|++.     +|++++.|| +.+|++.
T Consensus       319 ~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~---~~~~~~~~~~~V~svafspdG~-----~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          319 LGACPHPRYMDYFATAHSQHGLIQLINTYEKD---SNSIPIQLGMPIVDFCWHQDGS-----HLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             SCCEECSSCTTEEEEEETTTTEEEEEETTCTT---CCEEEEECSSCEEEEEECTTSS-----EEEEEESSE-EEEEEEG
T ss_pred             eeEEEccCCCCEEEEEECCCCEEEEEECCCCc---EEEEecCCCCcEEEEEEcCCCC-----EEEEEeCCC-eEEEEEe
Confidence            1111111  22 67788899999999999877   5667778899999999999985     799988665 7777664

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=8.4e-32  Score=251.39  Aligned_cols=255  Identities=12%  Similarity=0.186  Sum_probs=192.6

Q ss_pred             CCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC-----
Q 013717          140 SSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG-----  212 (437)
Q Consensus       140 ~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  212 (437)
                      .+.+.|.+++|+++.  |++|+.||.|++||+.+++.........                   ......+.+|.     
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~-------------------~~~~~~~~~h~~~~~~   86 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGE-------------------YNVYSTFQSHEPEFDY   86 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCC-------------------EEEEEEEECCCCEEEG
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccc-------------------eeEecccccccccccc
Confidence            478999999999765  9999999999999998765211100000                   00112334676     


Q ss_pred             -------CcEEEEEeCC----CeEEEEECCCcEEEEECCCcceE------------------------------------
Q 013717          213 -------DAVTGLAVNN----GLIYSVSWDKSLKIWRASDLRCL------------------------------------  245 (437)
Q Consensus       213 -------~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~------------------------------------  245 (437)
                             ..|.+++|++    ..+++++.||.|++||+.+++..                                    
T Consensus        87 ~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  166 (447)
T 3dw8_B           87 LKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEA  166 (447)
T ss_dssp             GGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEE
T ss_pred             cccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeec
Confidence                   8899999998    37999999999999999765432                                    


Q ss_pred             ---EE-eecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeE-------EeeCccccEEEEEEccCC-CEE
Q 013717          246 ---ES-IKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIA-------TLEKHKSAVNALALSDDG-TVL  312 (437)
Q Consensus       246 ---~~-~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~-~~l  312 (437)
                         .. ..+|...|.+++|+|++. |++| .||.|++||++...   ..+.       .+..|...|.+++|+|++ ++|
T Consensus       167 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  242 (447)
T 3dw8_B          167 SPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITD---RSFNIVDIKPANMEELTEVITAAEFHPNSCNTF  242 (447)
T ss_dssp             EEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEE---EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEE
T ss_pred             cceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCC---ceeeeeecccccccccCcceEEEEECCCCCcEE
Confidence               12 247899999999999998 7787 89999999987432   2222       255788999999999998 999


Q ss_pred             EEEeCCCcEEEEECCCCccceEEeeeeccccc------------ceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeee
Q 013717          313 FSGACDRSILVWDREDSANHMVVTGALRGHGK------------AILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGC  378 (437)
Q Consensus       313 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------------~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~  378 (437)
                      ++|+.||.|++||+++++........+.+|..            .|.++.++++  +|++++. +.|++||++...  .+
T Consensus       243 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~--~~  319 (447)
T 3dw8_B          243 VYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN--RP  319 (447)
T ss_dssp             EEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS--SC
T ss_pred             EEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc--cc
Confidence            99999999999999987642211233455554            8999988765  8999988 999999998722  36


Q ss_pred             eeeecCCCCC---------------eeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          379 LAVLEGHTKP---------------VKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       379 ~~~~~~h~~~---------------v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      +..+.+|...               +..++|+|++.     +|++|+.||.|++||+.+++.
T Consensus       320 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-----~l~s~s~dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          320 VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS-----VVMTGSYNNFFRMFDRNTKRD  376 (447)
T ss_dssp             SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS-----EEEEECSTTEEEEEETTTCCE
T ss_pred             cceeeccccccccccccccccccccceEEEECCCCC-----EEEEeccCCEEEEEEcCCCcc
Confidence            7788888642               23489999985     799999999999999987753

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.5e-30  Score=234.86  Aligned_cols=274  Identities=13%  Similarity=0.074  Sum_probs=216.7

Q ss_pred             cccceeecccc---ccccccCCCceeEEecCCC-cceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCce
Q 013717           58 SNLSLQTLPSV---PSLQKLSPDETINFSSASH-LCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTW  129 (437)
Q Consensus        58 ~~~~~~~~~~~---~~~~s~s~dg~i~~~~~~~-~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~  129 (437)
                      ....+.+.|..   ..+++++.||.|.+|+... .......+ +|...|.+++|+  +++|++++.| .|++||+.++..
T Consensus        41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  120 (368)
T 3mmy_A           41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA  120 (368)
T ss_dssp             CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCc
Confidence            33578899984   8999999999999999987 44444666 999999999999  8899999999 999999998643


Q ss_pred             eeeeccccCCCCcccEEEEEE--eCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccc
Q 013717          130 TSINTFNDNDSSSGSVKSVTF--CDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKK  205 (437)
Q Consensus       130 ~~~~~~~~~~~h~~~v~~l~~--~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (437)
                      ..  .    .+|...|.+++|  +++.  |++++.||.|++||+++++....+.                          
T Consensus       121 ~~--~----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------------------------  168 (368)
T 3mmy_A          121 IQ--I----AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ--------------------------  168 (368)
T ss_dssp             EE--E----EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE--------------------------
T ss_pred             ee--e----ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe--------------------------
Confidence            32  2    359999999999  6554  9999999999999999876444332                          


Q ss_pred             eeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEee--cccccEEEEEEecCC----e-EEEEeCCCeEEEe
Q 013717          206 KLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIK--AHEDAVNAVAVSAGG----T-VYTGSADRKIRVW  278 (437)
Q Consensus       206 ~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~----~-l~~~~~dg~v~iw  278 (437)
                           ....+.++.+.+..+++++.++.+++|+++.........  .+...+.++.+.++.    . +++++.||.|++|
T Consensus       169 -----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~  243 (368)
T 3mmy_A          169 -----LPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH  243 (368)
T ss_dssp             -----CSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred             -----cCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence                 334678888888899999999999999998765443322  334556666665433    2 9999999999999


Q ss_pred             cCCCCcccceeeEEeeCccc------------cEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccce
Q 013717          279 AKPFNEKRHALIATLEKHKS------------AVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI  346 (437)
Q Consensus       279 d~~~~~~~~~~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i  346 (437)
                      |++.... ......+..|..            .|.+++|+|++++|++++.||.|++||+++++    ....+.+|...|
T Consensus       244 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v  318 (368)
T 3mmy_A          244 YINPPNP-AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART----KLKTSEQLDQPI  318 (368)
T ss_dssp             ESSCSCH-HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE----EEEECCCCSSCE
T ss_pred             ecCCCCc-cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc----EEEEecCCCCCc
Confidence            9975432 134455666665            79999999999999999999999999998765    445567899999


Q ss_pred             EEEEeeCC--EEEEEeCCCcEEEeeCCCC
Q 013717          347 LCLINVAG--LLMSGSADRTVRIWQRGSD  373 (437)
Q Consensus       347 ~~~~~~~~--~l~~~~~dg~i~iwd~~~~  373 (437)
                      .+++|+++  +|++++.|+..+.|++...
T Consensus       319 ~~~~~s~~g~~l~~~s~d~~~~~~~~~~~  347 (368)
T 3mmy_A          319 SACCFNHNGNIFAYASSYDWSKGHEFYNP  347 (368)
T ss_dssp             EEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred             eEEEECCCCCeEEEEecccccccccccCC
Confidence            99998765  9999999987666665443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.8e-31  Score=244.67  Aligned_cols=250  Identities=20%  Similarity=0.297  Sum_probs=202.9

Q ss_pred             ecCccCCeEEEEee---CCEEEEEecC-eEEEEeCCC--------CceeeeeccccCCCCcccEEEEEEeCC---eEEEE
Q 013717           94 QLGHKLPIGCIAVH---HNFLYAASSH-EINVYDRTG--------TTWTSINTFNDNDSSSGSVKSVTFCDG---KIFTA  158 (437)
Q Consensus        94 ~~~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~--------~~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~  158 (437)
                      .++|.+.|++++|+   +++|++++.+ .|++||+..        +.......+   .+|...|.+++|+++   .|++|
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL---RGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE---ECCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe---cCCCCCeEEEEeCCCCCCeEEEE
Confidence            34999999999999   4689999999 999999975        122333333   579999999999965   49999


Q ss_pred             ecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEE
Q 013717          159 HQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLK  235 (437)
Q Consensus       159 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~  235 (437)
                      +.||.|++|++..+.......                       .....+.+|...|.+++|++   .++++++.||.|+
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~-----------------------~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~  257 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVI-----------------------DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM  257 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEE-----------------------ECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             eCCCeEEEEeCCCCCCCCcee-----------------------ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEE
Confidence            999999999998743211100                       01123346999999999987   7899999999999


Q ss_pred             EEECCCc---ceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCC
Q 013717          236 IWRASDL---RCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGT  310 (437)
Q Consensus       236 iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  310 (437)
                      +||++++   +.+..+..|...|++++|+|++.  +++|+.||.|++||++...   ..+..+..|...|.+++|+|+++
T Consensus       258 i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~---~~~~~~~~h~~~v~~i~~sp~~~  334 (430)
T 2xyi_A          258 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK---LKLHSFESHKDEIFQVQWSPHNE  334 (430)
T ss_dssp             EEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT---SCSEEEECCSSCEEEEEECSSCT
T ss_pred             EEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC---CCeEEeecCCCCEEEEEECCCCC
Confidence            9999987   57777888999999999999886  8899999999999997533   35667788999999999999985


Q ss_pred             -EEEEEeCCCcEEEEECCCCccc----------eEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCC
Q 013717          311 -VLFSGACDRSILVWDREDSANH----------MVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       311 -~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~  372 (437)
                       +|++++.||.|++||+......          ..+...+.+|...|.++.|+++   +|++++.||.|+||++..
T Consensus       335 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          335 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence             6999999999999999763211          1244556789999999999865   899999999999999875

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.2e-30  Score=232.15  Aligned_cols=299  Identities=15%  Similarity=0.148  Sum_probs=208.9

Q ss_pred             ccceeeccccccccccCCCceeEEecCCCcc---eeeeec-CccCCeEEEEee----CCEEEEEecC-eEEEEeCCCCce
Q 013717           59 NLSLQTLPSVPSLQKLSPDETINFSSASHLC---INSVQL-GHKLPIGCIAVH----HNFLYAASSH-EINVYDRTGTTW  129 (437)
Q Consensus        59 ~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~---~~~~~~-~h~~~V~~l~~~----~~~l~s~~~d-~v~vwd~~~~~~  129 (437)
                      ...+.+.|....+++++.||.|++|+.....   .....+ +|...|.+++|+    +++|++|+.| .|++||+..+..
T Consensus        14 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~   93 (351)
T 3f3f_A           14 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQE   93 (351)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSC
T ss_pred             eeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcc
Confidence            3578899999999999999999999996543   455666 999999999997    6899999999 999999987532


Q ss_pred             -------eeeeccccCCCCcccEEEEEEeCC--e--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCee
Q 013717          130 -------TSINTFNDNDSSSGSVKSVTFCDG--K--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYV  198 (437)
Q Consensus       130 -------~~~~~~~~~~~h~~~v~~l~~~~~--~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (437)
                             +....+   .+|...|.+++|+++  .  |++++.||.|++||+.+++...........              
T Consensus        94 ~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------------  156 (351)
T 3f3f_A           94 ECSGRRWNKLCTL---NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM--------------  156 (351)
T ss_dssp             TTSSCSEEEEEEE---CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE--------------
T ss_pred             cccccCcceeeee---cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc--------------
Confidence                   334443   579999999999975  3  999999999999999887654433210000              


Q ss_pred             EEeeccceeeecCCCcEEEEEeCC-----CeEEEEECCCcEEEEECCCcce--EEEeecccccEEEEEEecCC----e-E
Q 013717          199 TVRRHKKKLWIEHGDAVTGLAVNN-----GLIYSVSWDKSLKIWRASDLRC--LESIKAHEDAVNAVAVSAGG----T-V  266 (437)
Q Consensus       199 ~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~----~-l  266 (437)
                         .........|...+.+++|+|     .++++++.|+.+.+|+...++.  +..+.+|...|++++|+|++    . |
T Consensus       157 ---~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l  233 (351)
T 3f3f_A          157 ---KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLI  233 (351)
T ss_dssp             ---ESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEE
T ss_pred             ---cccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEE
Confidence               000001125788899999975     7999999999998888877765  66677899999999999997    6 9


Q ss_pred             EEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC----CCcEEEEECCCCccceEEeeeeccc
Q 013717          267 YTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC----DRSILVWDREDSANHMVVTGALRGH  342 (437)
Q Consensus       267 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~  342 (437)
                      ++|+.||.|++||++.....    .....+..........+....+..+..    ...+.+|+.    ........+.+|
T Consensus       234 ~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~h  305 (351)
T 3f3f_A          234 ATGCKDGRIRIFKITEKLSP----LASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSN----LQVELLSEHDDH  305 (351)
T ss_dssp             EEEETTSCEEEEEEEECC-------------------------------------------CCS----EEEEEEEEECTT
T ss_pred             EEEcCCCeEEEEeCCCCcCc----cccCCcccceeccCCCcccccccccccccccceeeeeccc----ccccEEEEEecc
Confidence            99999999999998754321    112222233334444444444444433    333444443    333456667889


Q ss_pred             ccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCC
Q 013717          343 GKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGH  385 (437)
Q Consensus       343 ~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h  385 (437)
                      ...|.+++++++  +|++|+.||.|++||+.+++.+.++..+..|
T Consensus       306 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~  350 (351)
T 3f3f_A          306 NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQ  350 (351)
T ss_dssp             SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEEEEC--
T ss_pred             cccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhheeehccc
Confidence            999999998754  9999999999999999998877888877665

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-31  Score=238.82  Aligned_cols=269  Identities=7%  Similarity=0.026  Sum_probs=193.0

Q ss_pred             CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCcccc
Q 013717          108 HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVND  186 (437)
Q Consensus       108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  186 (437)
                      +++|++|+.| .|++||+.+++  .+..+     ....|.++.+++. +++++.|++|++|+.............     
T Consensus        48 ~~~l~sg~~Dg~v~iwd~~~~~--~~~~~-----~~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~-----  114 (343)
T 3lrv_A           48 KWVCMCRCEDGALHFTQLKDSK--TITTI-----TTPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTN-----  114 (343)
T ss_dssp             EEEEEEEEETTEEEEEEESSSS--CEEEE-----EEECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTC-----
T ss_pred             CCEEEEECCCCcEEEEECCCCc--EEEEE-----ecCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCc-----
Confidence            7899999999 99999999853  33333     1466778888888 999999999999998743211110000     


Q ss_pred             ceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEEEECCCcEEEEECCCcceEEEee-cccccEEEEEEe
Q 013717          187 RLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYSVSWDKSLKIWRASDLRCLESIK-AHEDAVNAVAVS  261 (437)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~  261 (437)
                               ..      ......+|...|.+++++|    +++++++.||.|++||+++++.+.... .+...|.+++|+
T Consensus       115 ---------~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~  179 (343)
T 3lrv_A          115 ---------KV------LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLH  179 (343)
T ss_dssp             ---------CE------EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEEC
T ss_pred             ---------ce------eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEEC
Confidence                     00      0011125778999999987    789999999999999999999876664 455689999999


Q ss_pred             cCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC-ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeee
Q 013717          262 AGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK-HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGAL  339 (437)
Q Consensus       262 ~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  339 (437)
                      |++. |++|+.||.|++||++....   ....+.. |...|.+++|+|+|.+|++++ |+.|++||+++.+....+. .+
T Consensus       180 pdg~~lasg~~dg~i~iwd~~~~~~---~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~-~~  254 (343)
T 3lrv_A          180 KDSLLLALYSPDGILDVYNLSSPDQ---ASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYP-TY  254 (343)
T ss_dssp             TTSCEEEEECTTSCEEEEESSCTTS---CCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSC-CC
T ss_pred             CCCCEEEEEcCCCEEEEEECCCCCC---CccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeec-cc
Confidence            9999 89999999999999986542   2145666 999999999999999999999 5599999999876433221 11


Q ss_pred             cccccce--EEEEee--CCEEEEEeC-CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc---cCCCCceEEEEEecC
Q 013717          340 RGHGKAI--LCLINV--AGLLMSGSA-DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT---EEGQNGVVSVFSGSL  411 (437)
Q Consensus       340 ~~~~~~i--~~~~~~--~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~~~~~~l~s~~~  411 (437)
                      ..|...+  .+++++  +.+|++++. |+.|++|++.....  .. ..    .++..+.|.+   +.     ..+++++.
T Consensus       255 ~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~--~~-~~----~~~~~~~~~~~~~~~-----~~l~~~~~  322 (343)
T 3lrv_A          255 TIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK--NW-TK----DEESALCLQSDTADF-----TDMDVVCG  322 (343)
T ss_dssp             BC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC--SE-EE----EEEEECCC----CCC-----CEEEEEEE
T ss_pred             ccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc--ce-Ee----cCceeEecCcccccc-----ceeEEEec
Confidence            1222222  245555  559999888 99999999976542  11 11    4566777776   33     36777888


Q ss_pred             CCcEEEEeec
Q 013717          412 DGEIRAWQVS  421 (437)
Q Consensus       412 dg~i~iw~~~  421 (437)
                      ||.++++-..
T Consensus       323 d~~~~~~~~~  332 (343)
T 3lrv_A          323 DGGIAAILKT  332 (343)
T ss_dssp             TTEEEEEEEC
T ss_pred             CCceEEEEec
Confidence            8888877543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.98  E-value=9.8e-31  Score=240.06  Aligned_cols=285  Identities=8%  Similarity=-0.004  Sum_probs=213.6

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeecccc
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFND  137 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~  137 (437)
                      .++.++|....+++++.|++|+  +.    .....+ +|...|.+++|+++-     .+ .+.+|+.+.   .....+  
T Consensus        19 ~sv~~SpDG~~iASas~D~TV~--d~----~~~~~l~gh~~~v~~V~FsPdg-----~~~~~~~~~~~~---~~~~~~--   82 (588)
T 2j04_A           19 NNLTWARDGTLYLTTFPDISIG--QP----KYAKDINCNSKNLFHVKEFPLE-----FENKLDFELAQQ---NGLLNS--   82 (588)
T ss_dssp             CCEEECTTSCEEEECSSSEEEE--EE----CCCSCCSSBGGGTEEEEEECCC-----CCCTTTTSCCCS---SCSSTT--
T ss_pred             EEEEECCCCCEEEEEcCCceee--cc----cccceecCCCccEEEEEECCCC-----CcceEEEEeCCC---ceEeec--
Confidence            4789999999999999999999  42    222444 999999999999322     33 555554432   333333  


Q ss_pred             CCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC---
Q 013717          138 NDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG---  212 (437)
Q Consensus       138 ~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  212 (437)
                        .|...|.+++|+|++  |++++.||.|++||.+.     .+..+                           . |.   
T Consensus        83 --~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----~l~~l---------------------------~-~~~~~  127 (588)
T 2j04_A           83 --QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----MLTNL---------------------------D-SKGNL  127 (588)
T ss_dssp             --SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-----EEEEC---------------------------C-CSSCS
T ss_pred             --CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----eeeec---------------------------c-CCCcc
Confidence              468899999999876  99999999999999543     11111                           1 22   


Q ss_pred             --CcEEEEEeCC--CeEEEEECCCcEEEEECCCcce-------EEEe----ecccccEEEEEEecCCeEEEEeCCCeEEE
Q 013717          213 --DAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRC-------LESI----KAHEDAVNAVAVSAGGTVYTGSADRKIRV  277 (437)
Q Consensus       213 --~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~l~~~~~dg~v~i  277 (437)
                        ..|.+++|+|  ++|++|+.||+|++||+.+++.       +.++    .+|...|.+++|+|+| +++++.|+.|++
T Consensus       128 ~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrl  206 (588)
T 2j04_A          128 SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFS  206 (588)
T ss_dssp             TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEE
T ss_pred             ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEE
Confidence              3599999999  9999999999999999998853       5666    4677899999999999 999999999999


Q ss_pred             ecCCCCcccceeeEEe-eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEe--eCC
Q 013717          278 WAKPFNEKRHALIATL-EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLIN--VAG  354 (437)
Q Consensus       278 wd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~  354 (437)
                      ||+..+.. ......+ .+|...|.+++|+  |+.|++++ +++|++||+.+++.    .....+|...+..+.+  +++
T Consensus       207 Wd~~~~~~-~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~----~~~~~gh~~~V~~va~~~s~d  278 (588)
T 2j04_A          207 MTVSASSH-QPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSI----SSLKTGSLENFHIIPLNHEKE  278 (588)
T ss_dssp             ECCCSSSS-CCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEE----EEEECSCCSCCCEEEETTCSS
T ss_pred             EECCCCcc-ccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeE----EEEEcCCCceEEEEEeeeCCC
Confidence            99875441 1123445 3688899999999  68899887 79999999987642    1222369999988888  666


Q ss_pred             --EEEEEeCCCcEEEeeCCC-----CCC---------------eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecC
Q 013717          355 --LLMSGSADRTVRIWQRGS-----DGR---------------FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSL  411 (437)
Q Consensus       355 --~l~~~~~dg~i~iwd~~~-----~~~---------------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~  411 (437)
                        .|+++++||+ ++|....     ...               ...+..+.+ ...|.+++|+|++.     ++++++.
T Consensus       279 ~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~-----~lA~~~~  350 (588)
T 2j04_A          279 STILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGY-----SIAIVYD  350 (588)
T ss_dssp             CEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSS-----EEEEEEE
T ss_pred             CCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCC-----EEEEEEe
Confidence              8999999999 9998632     110               011223333 55699999999984     6777764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=3.9e-29  Score=232.34  Aligned_cols=299  Identities=11%  Similarity=0.105  Sum_probs=219.5

Q ss_pred             cCCCceeEEecCCC---cceeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEE
Q 013717           74 LSPDETINFSSASH---LCINSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKS  147 (437)
Q Consensus        74 ~s~dg~i~~~~~~~---~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~  147 (437)
                      .+.++.+.+|..+.   .......+.+...+.+++|+  +.++++++.+ .|++||+.+++...........+|...|.+
T Consensus        95 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~  174 (433)
T 3bws_A           95 KPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVET  174 (433)
T ss_dssp             SGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEE
T ss_pred             ccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeE
Confidence            34555455555543   22445555444556699998  5666677777 899999998655433322223578999999


Q ss_pred             EEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--C
Q 013717          148 VTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--G  223 (437)
Q Consensus       148 l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~  223 (437)
                      ++|+++.  +++++.|+.|++||+++++....+                              ..|...+.+++|++  +
T Consensus       175 ~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~  224 (433)
T 3bws_A          175 ISIPEHNELWVSQMQANAVHVFDLKTLAYKATV------------------------------DLTGKWSKILLYDPIRD  224 (433)
T ss_dssp             EEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE------------------------------ECSSSSEEEEEEETTTT
T ss_pred             EEEcCCCEEEEEECCCCEEEEEECCCceEEEEE------------------------------cCCCCCeeEEEEcCCCC
Confidence            9998554  889999999999999876543322                              24788999999998  5


Q ss_pred             eEE-EEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEe--------CCCeEEEecCCCCcccceeeEEe
Q 013717          224 LIY-SVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGS--------ADRKIRVWAKPFNEKRHALIATL  293 (437)
Q Consensus       224 ~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~--------~dg~v~iwd~~~~~~~~~~~~~~  293 (437)
                      .++ +++.|+.|++||+++++.+..+.. ...+.+++|+|++. +++++        .||.|++||+....    ....+
T Consensus       225 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~----~~~~~  299 (433)
T 3bws_A          225 LVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK----LIDTI  299 (433)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE----EEEEE
T ss_pred             EEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc----EEeec
Confidence            564 555899999999999988888764 45599999999997 77777        58899999987543    33333


Q ss_pred             eCccccEEEEEEccCCCEE-EEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeC---------
Q 013717          294 EKHKSAVNALALSDDGTVL-FSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSA---------  361 (437)
Q Consensus       294 ~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~---------  361 (437)
                       .+...+.+++|+|+++.+ ++++.|+.|++||+.+++...    .+. +...+.+++++++  +|++++.         
T Consensus       300 -~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~----~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~  373 (433)
T 3bws_A          300 -GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQK----SIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGY  373 (433)
T ss_dssp             -EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEE----EEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCT
T ss_pred             -cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEE----Eec-CCCCCCeEEEcCCCCEEEEEecCCCcccccc
Confidence             355688999999999755 666889999999998765332    222 4566777777754  7777766         


Q ss_pred             ------CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEec-CCCcEEEEeecc
Q 013717          362 ------DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGS-LDGEIRAWQVSV  422 (437)
Q Consensus       362 ------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~  422 (437)
                            ||.|++||+.+++   .+..+.. ...+.+++|+|++.     +|++++ .|+.|++|+++.
T Consensus       374 ~~~g~~dg~v~~~d~~~~~---~~~~~~~-~~~~~~~~~s~dg~-----~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          374 LKKGLVLGKVYVIDTTTDT---VKEFWEA-GNQPTGLDVSPDNR-----YLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             TSCCSSCCEEEEEETTTTE---EEEEEEC-SSSEEEEEECTTSC-----EEEEEETTTTEEEEEEETT
T ss_pred             ccccccceEEEEEECCCCc---EEEEecC-CCCCceEEEcCCCC-----EEEEEECCCCeEEEEEecC
Confidence                  5799999998865   5566655 45799999999885     566555 599999999863

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=8.6e-29  Score=223.33  Aligned_cols=270  Identities=14%  Similarity=0.127  Sum_probs=195.2

Q ss_pred             cccceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEE-EEEecC-eEEEEeCCCCceeeee
Q 013717           58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFL-YAASSH-EINVYDRTGTTWTSIN  133 (437)
Q Consensus        58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l-~s~~~d-~v~vwd~~~~~~~~~~  133 (437)
                      ...++.|.|....+++++.++ +++|+.+..... ... +...+..+++.  ++++ ++++.+ .|++||..+++  .+.
T Consensus        21 ~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~--~~~   95 (355)
T 3vu4_A           21 PVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI-MSQ-EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ--DVS   95 (355)
T ss_dssp             CCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE-EEE-ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE--EEE
T ss_pred             ceEEEEECCCCCEEEEEcCCE-EEEEecCCccee-eee-ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc--EEE
Confidence            345789999999999888776 679998754332 222 22245666665  6666 566777 99999999864  344


Q ss_pred             ccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCC-cccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717          134 TFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPT-KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG  212 (437)
Q Consensus       134 ~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (437)
                      .+    .|...|.++.++++.++.+. |+.|++||+.+. +....+.                               . 
T Consensus        96 ~~----~~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~-------------------------------~-  138 (355)
T 3vu4_A           96 RI----KVDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWKRITDDI-------------------------------R-  138 (355)
T ss_dssp             EE----ECSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSSCCE-------------------------------E-
T ss_pred             EE----ECCCceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeEEec-------------------------------c-
Confidence            44    26679999999998866654 789999999877 4333222                               1 


Q ss_pred             CcEEEEEeCCCeEEE--EECCCcEEEEECCCcc----------------eEEEeecccccEEEEEEecCCe-EEEEeCCC
Q 013717          213 DAVTGLAVNNGLIYS--VSWDKSLKIWRASDLR----------------CLESIKAHEDAVNAVAVSAGGT-VYTGSADR  273 (437)
Q Consensus       213 ~~v~~~~~~~~~l~~--~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg  273 (437)
                       +...+++++.+++.  |+.||.|++||+.+++                ++..+.+|...|++++|+|++. |++|+.||
T Consensus       139 -~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~  217 (355)
T 3vu4_A          139 -FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDG  217 (355)
T ss_dssp             -EEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred             -CCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCC
Confidence             22334455566666  5789999999999865                2677889999999999999998 99999999


Q ss_pred             e-EEEecCCCCcccceeeEEee-C-ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEe------e-------
Q 013717          274 K-IRVWAKPFNEKRHALIATLE-K-HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVT------G-------  337 (437)
Q Consensus       274 ~-v~iwd~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~-------  337 (437)
                      + |++||++...    .+..+. + |...|.+++|+|+|++|++++.|++|++||++.........      .       
T Consensus       218 ~~v~iwd~~~~~----~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (355)
T 3vu4_A          218 TIIRVFKTEDGV----LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEW  293 (355)
T ss_dssp             SEEEEEETTTCC----EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSS
T ss_pred             CEEEEEECCCCc----EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccccc
Confidence            8 9999987543    667777 5 89999999999999999999999999999997653211000      0       


Q ss_pred             -----ee-cccc--cceEEEEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717          338 -----AL-RGHG--KAILCLINVAGLLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       338 -----~~-~~~~--~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~  374 (437)
                           .+ ....  ..+.++..++.+|++++.||.+++|++..++
T Consensus       294 ~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          294 SLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             CSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             ceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence                 00 0111  1333444445599999999999999987544

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=2.5e-27  Score=217.10  Aligned_cols=303  Identities=14%  Similarity=0.124  Sum_probs=220.4

Q ss_pred             cccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEE-EEEecC-eEEEEeCCCCceeeeeccccCCCCccc
Q 013717           70 SLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFL-YAASSH-EINVYDRTGTTWTSINTFNDNDSSSGS  144 (437)
Q Consensus        70 ~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l-~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~  144 (437)
                      .+++.+.|+.|.+|+.... ++...+ +| ..+.+++|+  +++| ++++.+ .|++||+.+++.  ...+.    +...
T Consensus         4 l~vs~~~d~~v~v~d~~~~-~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~--~~~~~----~~~~   75 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTSN-KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV--IATVP----AGSS   75 (391)
T ss_dssp             EEEEETTTTEEEEEETTTT-EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE--EEEEE----CSSS
T ss_pred             EEEEcCCCCEEEEEECCCC-eEEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE--EEEEE----CCCC
Confidence            5677889999999999764 555566 55 458999999  7766 667677 999999998644  33331    3348


Q ss_pred             EEEEEEeCCe--E-EEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717          145 VKSVTFCDGK--I-FTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN  221 (437)
Q Consensus       145 v~~l~~~~~~--l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  221 (437)
                      +.+++|+++.  | ++++.++.|++||+.+++....+.                               +...+.+++|+
T Consensus        76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-------------------------------~~~~~~~~~~s  124 (391)
T 1l0q_A           76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-------------------------------TGKSPLGLALS  124 (391)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-------------------------------CSSSEEEEEEC
T ss_pred             ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-------------------------------CCCCcceEEEC
Confidence            9999999765  5 455577999999999876443322                               44578999999


Q ss_pred             C--CeE-EEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-E-EEEeCCCeEEEecCCCCcccceeeEEeeCc
Q 013717          222 N--GLI-YSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-V-YTGSADRKIRVWAKPFNEKRHALIATLEKH  296 (437)
Q Consensus       222 ~--~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  296 (437)
                      +  +.+ ++++.++.|++||+.+++.+..+..+ ..+.+++|+|++. + ++++.++.|++||++...    ....+. +
T Consensus       125 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~----~~~~~~-~  198 (391)
T 1l0q_A          125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS----VIDTVK-V  198 (391)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE----EEEEEE-C
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe----EEEEEe-c
Confidence            8  555 67888999999999999988888754 4579999999997 5 677889999999987543    344443 5


Q ss_pred             cccEEEEEEccCCCEEEEEe---CCCcEEEEECCCCccceEEeeeecccccceEEEEeeC--CEE-EEEeCCCcEEEeeC
Q 013717          297 KSAVNALALSDDGTVLFSGA---CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLL-MSGSADRTVRIWQR  370 (437)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l-~~~~~dg~i~iwd~  370 (437)
                      ...+.+++|+|+|++|++++   .++.|++||+++++..    ..+..+. .+.++.+++  ++| ++++.|+.|++||+
T Consensus       199 ~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~----~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~  273 (391)
T 1l0q_A          199 EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT----ARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDT  273 (391)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE----EEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE----EEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence            66889999999999999888   6899999999877532    2333333 356676664  455 67788999999999


Q ss_pred             CCCCCeeeeeeecCCCCCee---EEE------------EEccCCCC-----ceEEEEEecCCCcEEEEeeccCCC
Q 013717          371 GSDGRFGCLAVLEGHTKPVK---SLT------------AVTEEGQN-----GVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       371 ~~~~~~~~~~~~~~h~~~v~---~l~------------~~~~~~~~-----~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      .+++   .+..+..|..+..   .+.            |+.+....     ....+...+.|..+++|++..+..
T Consensus       274 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~  345 (391)
T 1l0q_A          274 ATNT---ITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS  345 (391)
T ss_dssp             TTTE---EEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred             CCCc---EEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence            9866   5666665544321   122            22221000     003577778899999999977653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2e-29  Score=226.72  Aligned_cols=263  Identities=8%  Similarity=0.013  Sum_probs=192.9

Q ss_pred             ccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCc-------eeeeeccc
Q 013717           65 LPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTT-------WTSINTFN  136 (437)
Q Consensus        65 ~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~-------~~~~~~~~  136 (437)
                      .+....+++++.||+|++|+........ .+. ...|.++.++.. +++++.| .|++|+.....       .+.+..+.
T Consensus        45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~-~~~-~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~  121 (343)
T 3lrv_A           45 YYDKWVCMCRCEDGALHFTQLKDSKTIT-TIT-TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE  121 (343)
T ss_dssp             SEEEEEEEEEEETTEEEEEEESSSSCEE-EEE-EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             cCCCCEEEEECCCCcEEEEECCCCcEEE-EEe-cCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence            3456789999999999999997644332 222 567888888866 9999999 99999876421       11111111


Q ss_pred             cCCCCcccEEEEEEeC--Ce--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717          137 DNDSSSGSVKSVTFCD--GK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG  212 (437)
Q Consensus       137 ~~~~h~~~v~~l~~~~--~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (437)
                        .+|...|.+++|++  +.  +++++.||+|++||+++++......                             ..|.
T Consensus       122 --~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-----------------------------~~~~  170 (343)
T 3lrv_A          122 --VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS-----------------------------AKSD  170 (343)
T ss_dssp             --CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC-----------------------------CCSS
T ss_pred             --cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-----------------------------cCCC
Confidence              25778999999998  54  8999999999999999876532221                             1356


Q ss_pred             CcEEEEEeCC--CeEEEEECCCcEEEEECCCcceE-EEeec-ccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc
Q 013717          213 DAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCL-ESIKA-HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH  287 (437)
Q Consensus       213 ~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~-~~~~~-~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~  287 (437)
                      ..|.+++|+|  .++++|+.||.|++||+++++.+ ..+.. |...|++++|+|++. |++++ ++.|++||++......
T Consensus       171 ~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~  249 (343)
T 3lrv_A          171 VEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL  249 (343)
T ss_dssp             CCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB
T ss_pred             CceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce
Confidence            6799999998  89999999999999999999887 78887 999999999999999 88888 5599999998654221


Q ss_pred             eeeEEeeCccccE--EEEEEccCCCEEEEEeC-CCcEEEEECCCCccceEEeeeecccccceEEEEeeC-----CEEEEE
Q 013717          288 ALIATLEKHKSAV--NALALSDDGTVLFSGAC-DRSILVWDREDSANHMVVTGALRGHGKAILCLINVA-----GLLMSG  359 (437)
Q Consensus       288 ~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~l~~~  359 (437)
                       .+..+..|...+  .+++|+|+|++|++++. |+.|++|++.........        ..+..+.+.+     ..++++
T Consensus       250 -~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~  320 (343)
T 3lrv_A          250 -AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK--------DEESALCLQSDTADFTDMDVV  320 (343)
T ss_dssp             -SSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE--------EEEEECCC----CCCCEEEEE
T ss_pred             -eecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe--------cCceeEecCccccccceeEEE
Confidence             122222233333  46999999999999998 999999999766544332        2334444443     488888


Q ss_pred             eCCCcEEEeeCC
Q 013717          360 SADRTVRIWQRG  371 (437)
Q Consensus       360 ~~dg~i~iwd~~  371 (437)
                      +.||.++++-..
T Consensus       321 ~~d~~~~~~~~~  332 (343)
T 3lrv_A          321 CGDGGIAAILKT  332 (343)
T ss_dssp             EETTEEEEEEEC
T ss_pred             ecCCceEEEEec
Confidence            889988887544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.7e-28  Score=224.60  Aligned_cols=240  Identities=11%  Similarity=0.137  Sum_probs=186.1

Q ss_pred             ccCCeEEEEee--CCEE-EEEecC-eEEEEeCC--CCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEe
Q 013717           97 HKLPIGCIAVH--HNFL-YAASSH-EINVYDRT--GTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQ  168 (437)
Q Consensus        97 h~~~V~~l~~~--~~~l-~s~~~d-~v~vwd~~--~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd  168 (437)
                      |.+.|.+++|+  +++| ++|+.| .|++||+.  ++..  +..+.. ..|...|.+++|+++.  |++++.||.|++|+
T Consensus       101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~--~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~  177 (450)
T 2vdu_B          101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV--LKLRKR-FCFSKRPNAISIAEDDTTVIIADKFGDVYSID  177 (450)
T ss_dssp             CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC--EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce--eeeeec-ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            44479999999  7885 889888 99999998  5432  333211 2477899999999765  99999999999999


Q ss_pred             CCCCcccc-cccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCC-----eEEEEECCCcEEEEECCCc
Q 013717          169 LTPTKHHK-LKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNG-----LIYSVSWDKSLKIWRASDL  242 (437)
Q Consensus       169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~l~~~~~dg~i~iwd~~~~  242 (437)
                      +.+++... ...                           .+.+|...|.+++|+|.     +|++|+.|+.|++||+.++
T Consensus       178 ~~~~~~~~~~~~---------------------------~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~  230 (450)
T 2vdu_B          178 INSIPEEKFTQE---------------------------PILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC  230 (450)
T ss_dssp             TTSCCCSSCCCC---------------------------CSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred             cCCcccccccce---------------------------eeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence            98775432 111                           22469999999999876     8999999999999999999


Q ss_pred             ceEEE-eecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEee-------------------------C
Q 013717          243 RCLES-IKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLE-------------------------K  295 (437)
Q Consensus       243 ~~~~~-~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------------------------~  295 (437)
                      +.+.. +.+|...|.+++|+ ++. |++++.|+.|++||+....    .+..+.                         .
T Consensus       231 ~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (450)
T 2vdu_B          231 FIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGK----NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDI  305 (450)
T ss_dssp             TCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCC----EEEEEECHHHHGGGCCTTSBC----------C
T ss_pred             ceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCc----Eeeeecchhhhhhhhhhccccccccccccccc
Confidence            88877 55899999999999 888 9999999999999987654    333333                         2


Q ss_pred             ccccEEEEEEccCCCEEEEEe-CCCcEEEEEC--CCCccceEEeeeecccccceEEEEeeCC-EEEEEeC-------CCc
Q 013717          296 HKSAVNALALSDDGTVLFSGA-CDRSILVWDR--EDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSA-------DRT  364 (437)
Q Consensus       296 ~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~-------dg~  364 (437)
                      ....|.+++|+|++++|++++ .|+.|++|++  ..+ ........+..| ..+.+++++++ ++++.+.       +..
T Consensus       306 ~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~-~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~  383 (450)
T 2vdu_B          306 IEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQK-GDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNF  383 (450)
T ss_dssp             BCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSST-TCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCS
T ss_pred             ceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCC-CceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcc
Confidence            345789999999999999998 8999999999  433 223345556666 78999999987 4444332       455


Q ss_pred             EEEeeCCCC
Q 013717          365 VRIWQRGSD  373 (437)
Q Consensus       365 i~iwd~~~~  373 (437)
                      |.+|.+...
T Consensus       384 i~v~~~~~~  392 (450)
T 2vdu_B          384 AKFIEYNLN  392 (450)
T ss_dssp             EEEEEEETT
T ss_pred             eEEEEEEcC
Confidence            888887643

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=3.9e-29  Score=228.83  Aligned_cols=225  Identities=10%  Similarity=0.077  Sum_probs=161.4

Q ss_pred             CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC--------C--eEEEEecCCeEEEEeCCCCcccc
Q 013717          108 HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD--------G--KIFTAHQDCKIRVWQLTPTKHHK  176 (437)
Q Consensus       108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--------~--~l~s~~~dg~i~iwd~~~~~~~~  176 (437)
                      +.+|++|+.| +|+|||...+.......+..+.+|.+.|++++|+|        +  .|++++.|++|++||+.++....
T Consensus       101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~  180 (393)
T 4gq1_A          101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL  180 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE
T ss_pred             CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee
Confidence            4589999999 99999999876555555555689999999999985        2  29999999999999998765322


Q ss_pred             cccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEe-----
Q 013717          177 LKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESI-----  248 (437)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~-----  248 (437)
                      .                              +..|...|.+++|+|   .+|++|+.||+|++||+++++.....     
T Consensus       181 ~------------------------------~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~  230 (393)
T 4gq1_A          181 A------------------------------GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL  230 (393)
T ss_dssp             E------------------------------EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------
T ss_pred             e------------------------------ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC
Confidence            2                              235889999999998   57999999999999999887543322     


Q ss_pred             --------------------ecccccEEEEEEe-cCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEE----
Q 013717          249 --------------------KAHEDAVNAVAVS-AGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNA----  302 (437)
Q Consensus       249 --------------------~~~~~~v~~~~~~-~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~----  302 (437)
                                          .+|...+.++.|+ +++. +++++.|+.+++||+.....    ...+..|...+..    
T Consensus       231 ~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~----~~~l~~~~~~~~~~~~~  306 (393)
T 4gq1_A          231 VKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND----YNEISDSTMKLGPKNLL  306 (393)
T ss_dssp             CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------CCS
T ss_pred             cccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC----CceEeeecCccccEEEc
Confidence                                2466778899987 7888 99999999999999875432    2222222222222    


Q ss_pred             --------------EEEcc--CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCc
Q 013717          303 --------------LALSD--DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRT  364 (437)
Q Consensus       303 --------------~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~  364 (437)
                                    ..++|  ++.++++|+.||.|++||+.+++....    ..+|...|.+++|+++  +||+++.+| 
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~----~~~~~~~V~svafspdG~~LA~as~~G-  381 (393)
T 4gq1_A          307 PNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSI----PIQLGMPIVDFCWHQDGSHLAIATEGS-  381 (393)
T ss_dssp             CSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEE----EEECSSCEEEEEECTTSSEEEEEESSE-
T ss_pred             cccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEE----ecCCCCcEEEEEEcCCCCEEEEEeCCC-
Confidence                          23333  344677888999999999998765433    3457788998888865  999998776 


Q ss_pred             EEEeeCC
Q 013717          365 VRIWQRG  371 (437)
Q Consensus       365 i~iwd~~  371 (437)
                      +.+|.+.
T Consensus       382 v~lvrL~  388 (393)
T 4gq1_A          382 VLLTRLM  388 (393)
T ss_dssp             EEEEEEG
T ss_pred             eEEEEEe
Confidence            6666554

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=2.9e-27  Score=216.72  Aligned_cols=260  Identities=14%  Similarity=0.132  Sum_probs=199.0

Q ss_pred             CEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--E-EEEecCCeEEEEeCCCCcccccccccCcc
Q 013717          109 NFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--I-FTAHQDCKIRVWQLTPTKHHKLKTTLPTV  184 (437)
Q Consensus       109 ~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  184 (437)
                      .++++++.+ .|++||+.+++  ....+   ..| ..+.+++|+++.  + ++++.|+.|++||+.+++....+.     
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~--~~~~~---~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~-----   71 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNK--VTATI---PVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP-----   71 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTE--EEEEE---ECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-----
T ss_pred             EEEEEcCCCCEEEEEECCCCe--EEEEe---ecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE-----
Confidence            357788888 99999999864  33343   223 458999999765  4 677799999999998876544332     


Q ss_pred             ccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEE-EEECCCcEEEEECCCcceEEEeecccccEEEEEEe
Q 013717          185 NDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIY-SVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVS  261 (437)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  261 (437)
                                                +...+.+++|++  ++++ ++..++.|++||+.+++.+..+.. ...+.+++|+
T Consensus        72 --------------------------~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s  124 (391)
T 1l0q_A           72 --------------------------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALS  124 (391)
T ss_dssp             --------------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEEC
T ss_pred             --------------------------CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEEC
Confidence                                      344899999998  5565 445679999999999998888774 4568999999


Q ss_pred             cCCe-E-EEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEE-EEEeCCCcEEEEECCCCccceEEeee
Q 013717          262 AGGT-V-YTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVL-FSGACDRSILVWDREDSANHMVVTGA  338 (437)
Q Consensus       262 ~~~~-l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~  338 (437)
                      |+++ + ++++.++.|++||+....    .+..+..+ ..+..++|+|++++| ++++.++.|++||+++++....    
T Consensus       125 ~dg~~l~~~~~~~~~v~~~d~~~~~----~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~----  195 (391)
T 1l0q_A          125 PDGKKLYVTNNGDKTVSVINTVTKA----VINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT----  195 (391)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTE----EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE----
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCc----EEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE----
Confidence            9998 5 688889999999986543    45555543 567999999999987 5777899999999987653322    


Q ss_pred             ecccccceEEEEeeC--CEEEEEe---CCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCC
Q 013717          339 LRGHGKAILCLINVA--GLLMSGS---ADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDG  413 (437)
Q Consensus       339 ~~~~~~~i~~~~~~~--~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  413 (437)
                      +. +...+.++.+++  .+|++++   .++.|++||+.+++   .+..+..|. .+.+++|+|++..    ++++++.|+
T Consensus       196 ~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~---~~~~~~~~~-~~~~~~~s~dg~~----l~~s~~~d~  266 (391)
T 1l0q_A          196 VK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK---ITARIPVGP-DPAGIAVTPDGKK----VYVALSFXN  266 (391)
T ss_dssp             EE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE---EEEEEECCS-SEEEEEECTTSSE----EEEEETTTT
T ss_pred             Ee-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe---EEEEEecCC-CccEEEEccCCCE----EEEEcCCCC
Confidence            22 345667777764  4777777   68999999999765   666776665 5789999998853    557889999


Q ss_pred             cEEEEeeccCC
Q 013717          414 EIRAWQVSVSC  424 (437)
Q Consensus       414 ~i~iw~~~~~~  424 (437)
                      .|++||+.+++
T Consensus       267 ~v~v~d~~~~~  277 (391)
T 1l0q_A          267 TVSVIDTATNT  277 (391)
T ss_dssp             EEEEEETTTTE
T ss_pred             EEEEEECCCCc
Confidence            99999998764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=7.2e-26  Score=210.33  Aligned_cols=266  Identities=14%  Similarity=0.125  Sum_probs=205.8

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeee----ec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceee
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSV----QL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTS  131 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~----~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~  131 (437)
                      ..+.+.|....+++.+.++.|.+|+.........    .+ +|...|.+++|+  ++++++++.+ .|++||+++++  .
T Consensus       126 ~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~--~  203 (433)
T 3bws_A          126 KSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA--Y  203 (433)
T ss_dssp             CCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC--E
T ss_pred             eEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce--E
Confidence            3678888777788888899999999976444321    34 899999999997  8899999998 99999998853  3


Q ss_pred             eeccccCCCCcccEEEEEEeCCe--E-EEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceee
Q 013717          132 INTFNDNDSSSGSVKSVTFCDGK--I-FTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLW  208 (437)
Q Consensus       132 ~~~~~~~~~h~~~v~~l~~~~~~--l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (437)
                      ...+   ..|...+.+++|+++.  + ++++.|+.|++||+.+++....+.                             
T Consensus       204 ~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~-----------------------------  251 (433)
T 3bws_A          204 KATV---DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD-----------------------------  251 (433)
T ss_dssp             EEEE---ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC-----------------------------
T ss_pred             EEEE---cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec-----------------------------
Confidence            3443   3588899999999765  5 455589999999998876443322                             


Q ss_pred             ecCCCcEEEEEeCC--CeEEEEE--------CCCcEEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEE
Q 013717          209 IEHGDAVTGLAVNN--GLIYSVS--------WDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIR  276 (437)
Q Consensus       209 ~~~~~~v~~~~~~~--~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~  276 (437)
                        +...+.++++++  +.+++++        .||.|++||+.+++.+..+. +...+.+++|+|++.  +++++.++.|+
T Consensus       252 --~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~  328 (433)
T 3bws_A          252 --KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIE  328 (433)
T ss_dssp             --CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEE
T ss_pred             --CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEE
Confidence              345689999998  6888887        58899999999998777663 566899999999996  56778999999


Q ss_pred             EecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC---------------CCcEEEEECCCCccceEEeeeecc
Q 013717          277 VWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC---------------DRSILVWDREDSANHMVVTGALRG  341 (437)
Q Consensus       277 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~  341 (437)
                      +||+...    +....+. +...+.+++|+|+|++|++++.               ||.|++||+.+++....    +..
T Consensus       329 v~d~~~~----~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~----~~~  399 (433)
T 3bws_A          329 VYDLKEK----KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEF----WEA  399 (433)
T ss_dssp             EEETTTT----EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEE----EEC
T ss_pred             EEECCCC----cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEE----ecC
Confidence            9998744    3444444 6678999999999999988876               57999999987753332    332


Q ss_pred             cccceEEEEeeC--CEEEEEeC-CCcEEEeeCCC
Q 013717          342 HGKAILCLINVA--GLLMSGSA-DRTVRIWQRGS  372 (437)
Q Consensus       342 ~~~~i~~~~~~~--~~l~~~~~-dg~i~iwd~~~  372 (437)
                       ...+.++++++  ++|++++. |+.|++|++..
T Consensus       400 -~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          400 -GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             -SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             -CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence             34567777764  47777764 99999999863

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=9.7e-26  Score=194.54  Aligned_cols=257  Identities=12%  Similarity=0.067  Sum_probs=169.4

Q ss_pred             cccCCCceeEEecCCCc--ceeeeec-CccCCeEEEEee---CCEEEEEecC-eE-EEEeCCCCce-eeeeccccCCCCc
Q 013717           72 QKLSPDETINFSSASHL--CINSVQL-GHKLPIGCIAVH---HNFLYAASSH-EI-NVYDRTGTTW-TSINTFNDNDSSS  142 (437)
Q Consensus        72 ~s~s~dg~i~~~~~~~~--~~~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v-~vwd~~~~~~-~~~~~~~~~~~h~  142 (437)
                      ...-....+.+|+....  .++++++ +|..+|..+++.   .+++..+-.+ .+ .++-+.-... +.........+|.
T Consensus        57 ~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~  136 (356)
T 2w18_A           57 IITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNI  136 (356)
T ss_dssp             EEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEE
T ss_pred             EEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCe
Confidence            33445678999999765  3788888 999999999998   4555555544 22 2222211100 0000000002344


Q ss_pred             ccEEEEEEeCCeEEEEe---cCCeEEEEeCCC-CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717          143 GSVKSVTFCDGKIFTAH---QDCKIRVWQLTP-TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL  218 (437)
Q Consensus       143 ~~v~~l~~~~~~l~s~~---~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  218 (437)
                      ..|..+  ..++++.++   .|+.|++|++.. ++....                              +..|...+..+
T Consensus       137 ~~v~~l--~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s------------------------------~~~~~~~v~~l  184 (356)
T 2w18_A          137 KAVLGL--TKRRLVSSSGTLSDQQVEVMTFAEDGGGKEN------------------------------QFLMPPEETIL  184 (356)
T ss_dssp             EEEEEE--TTTEEEEEESSSTTCEEEEEEECTTSCEEEE------------------------------EEECCCSSCEE
T ss_pred             EEEEec--CCCcEEEecccCCCCcEEEEEECCCCceeee------------------------------eccCCCceeeE
Confidence            445443  344455554   488888888843 432221                              13577777777


Q ss_pred             EeCC-----CeEEEEECCCcEEEEECCCcceEEEeeccc---ccEEEEEEecCCe-E------------EEEeCCCeEEE
Q 013717          219 AVNN-----GLIYSVSWDKSLKIWRASDLRCLESIKAHE---DAVNAVAVSAGGT-V------------YTGSADRKIRV  277 (437)
Q Consensus       219 ~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~-l------------~~~~~dg~v~i  277 (437)
                      +|++     ..|++++.|++|+|||+++++++.++.+|.   ..+.+++|+|+|. +            ++|+.|++|++
T Consensus       185 ~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIkl  264 (356)
T 2w18_A          185 TFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIV  264 (356)
T ss_dssp             EEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEE
T ss_pred             EeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEE
Confidence            6665     899999999999999999999999998643   4678889999998 4            56788999999


Q ss_pred             ecCCCCcccceeeEEe-----eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceE-EEEe
Q 013717          278 WAKPFNEKRHALIATL-----EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAIL-CLIN  351 (437)
Q Consensus       278 wd~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~-~~~~  351 (437)
                      ||..+..    .+..+     .+|...+.+..++  +.++++++.|++|+|||+.+++    ....+.+|...+. +++|
T Consensus       265 Wd~~tgk----~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk----~l~tL~gH~~~vvs~vaf  334 (356)
T 2w18_A          265 INPKTTL----SVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQ----CTALLPPVSDQHWSFVKW  334 (356)
T ss_dssp             EETTTTE----EEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCS----EEEEECCC--CCCCEEEE
T ss_pred             EECCCCE----EEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCc----EEEEecCCCCCeEEEEEE
Confidence            9886543    33322     3555555444444  7899999999999999999887    4445667766543 3555


Q ss_pred             e--CCEEEEEeCCCcEEEeeC
Q 013717          352 V--AGLLMSGSADRTVRIWQR  370 (437)
Q Consensus       352 ~--~~~l~~~~~dg~i~iwd~  370 (437)
                      +  +.+|++|+.|++|+|||+
T Consensus       335 SPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          335 SGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCCCEEEEEECCCcEEEecC
Confidence            5  459999999999999985

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=4.2e-24  Score=202.51  Aligned_cols=322  Identities=13%  Similarity=0.072  Sum_probs=227.0

Q ss_pred             eccccccccccCCCceeEEecCCCcceeeeec--CccCCeEEEEee--CCEEEEEecC-eEEEEeC--CCCceeeeeccc
Q 013717           64 TLPSVPSLQKLSPDETINFSSASHLCINSVQL--GHKLPIGCIAVH--HNFLYAASSH-EINVYDR--TGTTWTSINTFN  136 (437)
Q Consensus        64 ~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~--~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~--~~~~~~~~~~~~  136 (437)
                      +.|....+++.+.+++|.+|+.... +++..+  +|.  +.+++|+  |++|++++.+ .|.+||+  .+  .+.+..+.
T Consensus       145 ~~p~~~~~vs~~~d~~V~v~D~~t~-~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t--~~~~~~i~  219 (543)
T 1nir_A          145 LDLPNLFSVTLRDAGQIALVDGDSK-KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKE--PTKVAEIK  219 (543)
T ss_dssp             CCGGGEEEEEEGGGTEEEEEETTTC-CEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSS--CEEEEEEE
T ss_pred             cCCCCEEEEEEcCCCeEEEEECCCc-eEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCC--CcEEEEEe
Confidence            5566677888889999999998764 445555  554  8899999  8999999999 9999999  66  44555552


Q ss_pred             cCCCCcccEEEEEEeC----Ce--EEEEe-cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717          137 DNDSSSGSVKSVTFCD----GK--IFTAH-QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI  209 (437)
Q Consensus       137 ~~~~h~~~v~~l~~~~----~~--l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (437)
                          +...+..++|++    ++  +++++ .+++|.+||..+.+....+........       .           .. .
T Consensus       220 ----~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~-------~-----------~~-~  276 (543)
T 1nir_A          220 ----IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD-------T-----------QT-Y  276 (543)
T ss_dssp             ----CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSS-------S-----------CC-E
T ss_pred             ----cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccC-------c-----------cc-c
Confidence                456789999998    65  66666 589999999988765544331100000       0           00 0


Q ss_pred             cCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEE--EeecccccEEEEEEecCCe-EEE-EeCCCeEEEecCCC
Q 013717          210 EHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLE--SIKAHEDAVNAVAVSAGGT-VYT-GSADRKIRVWAKPF  282 (437)
Q Consensus       210 ~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~-l~~-~~~dg~v~iwd~~~  282 (437)
                      .+...+.++.+++   .++++...++.|.+||+.+.+.+.  .+ .+...+..++|+|+++ +++ +..++.|.+||..+
T Consensus       277 ~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t  355 (543)
T 1nir_A          277 HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD  355 (543)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             ccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCC
Confidence            1234788899987   567777889999999998876544  33 3566788999999998 554 45689999999875


Q ss_pred             CcccceeeEEeeC----ccccEEEEEEccC-CCEEEEEe-CCCcEEEEECCCCcc---ceEEeeeecccccceEEEEeeC
Q 013717          283 NEKRHALIATLEK----HKSAVNALALSDD-GTVLFSGA-CDRSILVWDREDSAN---HMVVTGALRGHGKAILCLINVA  353 (437)
Q Consensus       283 ~~~~~~~~~~~~~----~~~~i~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~i~~~~~~~  353 (437)
                      +.    ++..+..    |.+....+ ++|+ |..++++. .|++|.+||+.+...   .......+.+|...+..+.+++
T Consensus       356 g~----l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p  430 (543)
T 1nir_A          356 RR----LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP  430 (543)
T ss_dssp             TE----EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT
T ss_pred             Ce----EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC
Confidence            53    4555543    44333333 4677 66666665 589999999987211   1335566777777766666665


Q ss_pred             C--EEEEEe-------CCCcEEEeeCCCCCCeeeeee--------ecCCCCCeeEEEEEccCCCCceEEEEEe----cCC
Q 013717          354 G--LLMSGS-------ADRTVRIWQRGSDGRFGCLAV--------LEGHTKPVKSLTAVTEEGQNGVVSVFSG----SLD  412 (437)
Q Consensus       354 ~--~l~~~~-------~dg~i~iwd~~~~~~~~~~~~--------~~~h~~~v~~l~~~~~~~~~~~~~l~s~----~~d  412 (437)
                      +  +|++++       .+++|.+||+.+.+..  ...        +..+...+..+.|+|++..    ++++.    +.|
T Consensus       431 dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~----~~~s~~~~~~~~  504 (543)
T 1nir_A          431 KSSHLYVDTTFNPDARISQSVAVFDLKNLDAK--YQVLPIAEWADLGEGAKRVVQPEYNKRGDE----VWFSVWNGKNDS  504 (543)
T ss_dssp             TCCEEEECCTTCSSHHHHTCEEEEETTCTTSC--CEEECHHHHHCCCSSCCEEEEEEECSSSSE----EEEEEECCTTSC
T ss_pred             CCCcEEEecCCCCCcccCceEEEEECCCCCCC--eEEeechhhcccCCCCCceEeccCCCCCCE----EEEEeecCCCCC
Confidence            4  888887       2779999999988732  133        2456788999999999864    44443    258


Q ss_pred             CcEEEEeeccCCC
Q 013717          413 GEIRAWQVSVSCP  425 (437)
Q Consensus       413 g~i~iw~~~~~~~  425 (437)
                      +.|.|||.++.+.
T Consensus       505 ~~i~v~D~~t~~~  517 (543)
T 1nir_A          505 SALVVVDDKTLKL  517 (543)
T ss_dssp             CEEEEEETTTTEE
T ss_pred             CeEEEEECCCceE
Confidence            9999999998864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=2.7e-24  Score=197.86  Aligned_cols=270  Identities=10%  Similarity=-0.005  Sum_probs=202.0

Q ss_pred             CCc----eeEEecC--CCcceee-eec-CccCCeEEEEee----------------CCEEEEEec-------CeEEEEeC
Q 013717           76 PDE----TINFSSA--SHLCINS-VQL-GHKLPIGCIAVH----------------HNFLYAASS-------HEINVYDR  124 (437)
Q Consensus        76 ~dg----~i~~~~~--~~~~~~~-~~~-~h~~~V~~l~~~----------------~~~l~s~~~-------d~v~vwd~  124 (437)
                      .+|    .+++|+.  ....... ..+ +|...+..++++                +..++.++.       ..|++||+
T Consensus        87 ~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~  166 (415)
T 2hqs_A           87 PDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDY  166 (415)
T ss_dssp             TTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEET
T ss_pred             CCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcC
Confidence            466    8999999  6554332 445 899888887765                556666654       38999999


Q ss_pred             CCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCC---eEEEEeCCCCcccccccccCccccceeeecCCCCeeE
Q 013717          125 TGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDC---KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVT  199 (437)
Q Consensus       125 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (437)
                      +++...   .+   .+|...|.+++|+|++  |++++.++   .|++||+.+++....                      
T Consensus       167 ~g~~~~---~l---~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l----------------------  218 (415)
T 2hqs_A          167 DGYNQF---VV---HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV----------------------  218 (415)
T ss_dssp             TSCSCE---EE---EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE----------------------
T ss_pred             CCCCCE---EE---eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEe----------------------
Confidence            864332   22   3588899999999876  88888775   999999998764321                      


Q ss_pred             EeeccceeeecCCCcEEEEEeCC--CeEE-EEECCCc--EEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeC-C
Q 013717          200 VRRHKKKLWIEHGDAVTGLAVNN--GLIY-SVSWDKS--LKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSA-D  272 (437)
Q Consensus       200 ~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~-d  272 (437)
                               ..|...+.+++|+|  +.|+ +++.++.  |++||+.+++. ..+..+...+.+++|+|+|+ |++++. +
T Consensus       219 ---------~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~  288 (415)
T 2hqs_A          219 ---------ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQA  288 (415)
T ss_dssp             ---------ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTT
T ss_pred             ---------ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCC
Confidence                     24777899999998  5566 6666655  99999998876 55667888999999999998 777775 4


Q ss_pred             C--eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC---CcEEEEECCCCccceEEeeeecccccceE
Q 013717          273 R--KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD---RSILVWDREDSANHMVVTGALRGHGKAIL  347 (437)
Q Consensus       273 g--~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~i~  347 (437)
                      +  .|.+||+....     ...+..+...+.+++|+|||++|++++.+   ..|++||+.+++..     .+..+. .+.
T Consensus       289 g~~~i~~~d~~~~~-----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-----~l~~~~-~~~  357 (415)
T 2hqs_A          289 GRPQVYKVNINGGA-----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-----VLSSTF-LDE  357 (415)
T ss_dssp             SSCEEEEEETTSSC-----CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-----ECCCSS-SCE
T ss_pred             CCcEEEEEECCCCC-----EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-----EecCCC-CcC
Confidence            5  67777876543     23344566788999999999999988764   68999999876531     123333 666


Q ss_pred             EEEeeC--CEEEEEeCCC---cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccC
Q 013717          348 CLINVA--GLLMSGSADR---TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEE  398 (437)
Q Consensus       348 ~~~~~~--~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  398 (437)
                      ++.|++  .+|++++.++   .|++||+..+    ....+.+|.+.|.+++|+|..
T Consensus       358 ~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~----~~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          358 TPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR----FKARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             EEEECTTSSEEEEEEEETTEEEEEEEETTSC----CEEECCCSSSEEEEEEECCCC
T ss_pred             CeEEcCCCCEEEEEEcCCCccEEEEEECCCC----cEEEeeCCCCCCcCCcccccc
Confidence            677664  4788887776   7999998753    567888999999999999975

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=2.1e-24  Score=198.55  Aligned_cols=272  Identities=11%  Similarity=0.040  Sum_probs=197.6

Q ss_pred             cCCeEEEEee---CCEEEEEe--------cC-eEEEEeC--CCCceeeeeccccCCCCcccEEEEEEe------------
Q 013717           98 KLPIGCIAVH---HNFLYAAS--------SH-EINVYDR--TGTTWTSINTFNDNDSSSGSVKSVTFC------------  151 (437)
Q Consensus        98 ~~~V~~l~~~---~~~l~s~~--------~d-~v~vwd~--~~~~~~~~~~~~~~~~h~~~v~~l~~~------------  151 (437)
                      ...|...+|.   .+++++|+        .+ .|++||+  .+++......+   .+|...+..+++.            
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~~~~~~~g~  138 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSY---KVNKQWLRYAGHTASDEVFEKLTGI  138 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEE---EECGGGHHHHHHHHHHHHHHHHHSS
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEE---EcChhHHHHHHHHHHHHHHHHHcCC
Confidence            3466666776   46677776        12 7999999  77643322334   4577777777665            


Q ss_pred             ----CCeEEEEecC------CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717          152 ----DGKIFTAHQD------CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN  221 (437)
Q Consensus       152 ----~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  221 (437)
                          +..++.++.+      +.|++||++.... .                              .+.+|...+.+++|+
T Consensus       139 ~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-~------------------------------~l~~~~~~v~~~~~S  187 (415)
T 2hqs_A          139 KGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-F------------------------------VVHRSPQPLMSPAWS  187 (415)
T ss_dssp             CCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC-E------------------------------EEEEESSCEEEEEEC
T ss_pred             CCcCCCEEEEEEecCCCCccceEEEEcCCCCCC-E------------------------------EEeCCCCcceeeEEc
Confidence                3456666654      7999999975331 1                              223588899999999


Q ss_pred             C--CeEEEEECCC---cEEEEECCCcceEEEeecccccEEEEEEecCCe-EE-EEeCCCe--EEEecCCCCcccceeeEE
Q 013717          222 N--GLIYSVSWDK---SLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY-TGSADRK--IRVWAKPFNEKRHALIAT  292 (437)
Q Consensus       222 ~--~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~dg~--v~iwd~~~~~~~~~~~~~  292 (437)
                      |  +.|++++.++   .|++||+.+++.. .+..+...+.+++|+|||+ |+ +++.++.  |.+||+....     ...
T Consensus       188 pdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-----~~~  261 (415)
T 2hqs_A          188 PDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-----IRQ  261 (415)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-----EEE
T ss_pred             CCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-----EEe
Confidence            9  7899998875   9999999998875 4556788999999999998 66 5666554  9999987543     345


Q ss_pred             eeCccccEEEEEEccCCCEEEEEeC-CC--cEEEEECCCCccceEEeeeecccccceEEEEeeC--CEEEEEeCC---Cc
Q 013717          293 LEKHKSAVNALALSDDGTVLFSGAC-DR--SILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLLMSGSAD---RT  364 (437)
Q Consensus       293 ~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~d---g~  364 (437)
                      +..|...+.+++|+|||++|++++. ++  .|++||+.+++..     .+..+...+.++.|++  ++|++++.+   +.
T Consensus       262 l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-----~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~  336 (415)
T 2hqs_A          262 VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-----RITWEGSQNQDADVSSDGKFMVMVSSNGGQQH  336 (415)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-----ECCCSSSEEEEEEECTTSSEEEEEEECSSCEE
T ss_pred             CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-----EEecCCCcccCeEECCCCCEEEEEECcCCceE
Confidence            6678889999999999999988876 44  6788898876421     1233455666666654  477777664   58


Q ss_pred             EEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCC---cEEEEeeccCC
Q 013717          365 VRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDG---EIRAWQVSVSC  424 (437)
Q Consensus       365 i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg---~i~iw~~~~~~  424 (437)
                      |++||+.+++   . ..+..|. .+.+++|+|++.     +|++++.|+   .|++||++.+.
T Consensus       337 i~~~d~~~~~---~-~~l~~~~-~~~~~~~spdg~-----~l~~~s~~~~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          337 IAKQDLATGG---V-QVLSSTF-LDETPSLAPNGT-----MVIYSSSQGMGSVLNLVSTDGRF  389 (415)
T ss_dssp             EEEEETTTCC---E-EECCCSS-SCEEEEECTTSS-----EEEEEEEETTEEEEEEEETTSCC
T ss_pred             EEEEECCCCC---E-EEecCCC-CcCCeEEcCCCC-----EEEEEEcCCCccEEEEEECCCCc
Confidence            9999999866   2 4455554 899999999985     677777766   79999987654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=2.6e-23  Score=197.11  Aligned_cols=276  Identities=9%  Similarity=0.125  Sum_probs=203.3

Q ss_pred             ee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeC--CCCcccccc
Q 013717          106 VH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQL--TPTKHHKLK  178 (437)
Q Consensus       106 ~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~--~~~~~~~~~  178 (437)
                      ++  +.++++++.+ .|.+||..+++  .+..+.  .++.  +..++|++++  |++++.|++|++||+  .+++....+
T Consensus       145 ~~p~~~~~vs~~~d~~V~v~D~~t~~--~~~~i~--~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i  218 (543)
T 1nir_A          145 LDLPNLFSVTLRDAGQIALVDGDSKK--IVKVID--TGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI  218 (543)
T ss_dssp             CCGGGEEEEEEGGGTEEEEEETTTCC--EEEEEE--CSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             cCCCCEEEEEEcCCCeEEEEECCCce--EEEEEe--cCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence            55  7788888888 99999999854  344442  1233  8899999775  899999999999999  655433222


Q ss_pred             cccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC------CeEEEEE-CCCcEEEEECCCcceEEEeecc
Q 013717          179 TTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN------GLIYSVS-WDKSLKIWRASDLRCLESIKAH  251 (437)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~  251 (437)
                      .                               +...+..++|+|      +++++++ .+++|.+||..+++++..+..+
T Consensus       219 ~-------------------------------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~  267 (543)
T 1nir_A          219 K-------------------------------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR  267 (543)
T ss_dssp             E-------------------------------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC
T ss_pred             e-------------------------------cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeeccc
Confidence            1                               455678899985      6787777 4899999999999998888642


Q ss_pred             -----------cccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-C
Q 013717          252 -----------EDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-C  317 (437)
Q Consensus       252 -----------~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~  317 (437)
                                 ...+.++.++|++.  +++...++.|.+||+......  .+..+. +...+..+.|+|+|++|++++ .
T Consensus       268 g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l--~~~~i~-~~~~~~~~~~spdg~~l~va~~~  344 (543)
T 1nir_A          268 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL--TVTSIG-AAPFLHDGGWDSSHRYFMTAANN  344 (543)
T ss_dssp             EECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC--EEEEEE-CCSSCCCEEECTTSCEEEEEEGG
T ss_pred             CcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc--eeEEec-cCcCccCceECCCCCEEEEEecC
Confidence                       23789999999776  677788999999998754321  122332 456788999999999876654 5


Q ss_pred             CCcEEEEECCCCccceEEeeeecccccceEEEE-ee-CCEEEEEe-CCCcEEEeeCCCCCC----eeeeeeecCCCCCee
Q 013717          318 DRSILVWDREDSANHMVVTGALRGHGKAILCLI-NV-AGLLMSGS-ADRTVRIWQRGSDGR----FGCLAVLEGHTKPVK  390 (437)
Q Consensus       318 dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~-~~-~~~l~~~~-~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~  390 (437)
                      +++|.+||+.+++....+......|......+. .. +.+++++. .|++|.+||+.+.+.    ++++.++.+|.+.+.
T Consensus       345 ~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~  424 (543)
T 1nir_A          345 SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSL  424 (543)
T ss_dssp             GTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCC
T ss_pred             CCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCce
Confidence            889999999988644333222223554444443 23 23666665 689999999987321    568999999999999


Q ss_pred             EEEEEccCCCCceEEEEEec-------CCCcEEEEeeccCCCC
Q 013717          391 SLTAVTEEGQNGVVSVFSGS-------LDGEIRAWQVSVSCPN  426 (437)
Q Consensus       391 ~l~~~~~~~~~~~~~l~s~~-------~dg~i~iw~~~~~~~~  426 (437)
                      .++++|++.     +|++++       .+++|.+||+.+.+..
T Consensus       425 ~v~~~pdg~-----~l~v~~~~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          425 FIKTHPKSS-----HLYVDTTFNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             CEECCTTCC-----EEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             EEEcCCCCC-----cEEEecCCCCCcccCceEEEEECCCCCCC
Confidence            999999985     688876       2789999999988754

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=5.2e-22  Score=178.15  Aligned_cols=270  Identities=8%  Similarity=0.168  Sum_probs=177.2

Q ss_pred             EEEEecC-eEEEEeCC-CCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC-CeEEEEeCC--CCcccccccccCc
Q 013717          111 LYAASSH-EINVYDRT-GTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD-CKIRVWQLT--PTKHHKLKTTLPT  183 (437)
Q Consensus       111 l~s~~~d-~v~vwd~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d-g~i~iwd~~--~~~~~~~~~~~~~  183 (437)
                      +++++.+ .|++||+. ++..+....+    .|...+.+++|++++  |++++.+ +.|.+|+++  +++... ...   
T Consensus         8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~-~~~---   79 (343)
T 1ri6_A            8 YIASPESQQIHVWNLNHEGALTLTQVV----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF-AAE---   79 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEE----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-EEE---
T ss_pred             EEeCCCCCeEEEEEECCCCcEEEeeeE----ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee-ccc---
Confidence            3444667 99999996 3334444443    367789999999765  7777766 999999997  333211 111   


Q ss_pred             cccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC-CCcEEEEECC---CcceEEEeecccccEEE
Q 013717          184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW-DKSLKIWRAS---DLRCLESIKAHEDAVNA  257 (437)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-dg~i~iwd~~---~~~~~~~~~~~~~~v~~  257 (437)
                                              +. ....+..++|++  +++++++. ++.|.+||+.   ..+.+..+. ....+.+
T Consensus        80 ------------------------~~-~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~  133 (343)
T 1ri6_A           80 ------------------------SA-LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHS  133 (343)
T ss_dssp             ------------------------EE-CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCC
T ss_pred             ------------------------cc-cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceE
Confidence                                    11 223678899988  66666654 8899999994   444444444 3445889


Q ss_pred             EEEecCCe-EEEEe-CCCeEEEecCCCCcccceeeE--Eee-CccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCcc
Q 013717          258 VAVSAGGT-VYTGS-ADRKIRVWAKPFNEKRHALIA--TLE-KHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSAN  331 (437)
Q Consensus       258 ~~~~~~~~-l~~~~-~dg~v~iwd~~~~~~~~~~~~--~~~-~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~  331 (437)
                      ++|+|+++ +++++ .++.|.+||+...... ....  ... .....+..++|+|+|+++++++ .++.|.+|++.....
T Consensus       134 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g  212 (343)
T 1ri6_A          134 ANISPDNRTLWVPALKQDRICLFTVSDDGHL-VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG  212 (343)
T ss_dssp             CEECTTSSEEEEEEGGGTEEEEEEECTTSCE-EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS
T ss_pred             EEECCCCCEEEEecCCCCEEEEEEecCCCce-eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence            99999998 76666 8999999998752211 1111  222 2345788999999999776554 789999999964222


Q ss_pred             ceEEeeeec----cc--ccceEEEEee--CCEEE-EEeCCCcEEEeeCCCC-CCeeeeeeecCCCCCeeEEEEEccCCCC
Q 013717          332 HMVVTGALR----GH--GKAILCLINV--AGLLM-SGSADRTVRIWQRGSD-GRFGCLAVLEGHTKPVKSLTAVTEEGQN  401 (437)
Q Consensus       332 ~~~~~~~~~----~~--~~~i~~~~~~--~~~l~-~~~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~  401 (437)
                      .........    ++  ...+..+.++  +++|+ ++..++.|++||+... .....+..+..+.. +.+++|+|++.  
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~--  289 (343)
T 1ri6_A          213 NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGK--  289 (343)
T ss_dssp             CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSS--
T ss_pred             cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCC--
Confidence            111111111    11  2234456666  44555 5557999999999832 22345555655554 89999999885  


Q ss_pred             ceEEEEEec-CCCcEEEEeec
Q 013717          402 GVVSVFSGS-LDGEIRAWQVS  421 (437)
Q Consensus       402 ~~~~l~s~~-~dg~i~iw~~~  421 (437)
                         +|++++ .|+.|.+|+++
T Consensus       290 ---~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          290 ---YLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             ---EEEEECTTTCEEEEEEEE
T ss_pred             ---EEEEecCCCCeEEEEEEc
Confidence               455555 78999999776

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=2e-21  Score=174.32  Aligned_cols=294  Identities=10%  Similarity=0.107  Sum_probs=192.8

Q ss_pred             ccccCCCceeEEecCCCcc--eeeeecCccCCeEEEEee--CCEEEEEecC--eEEEEeCC--CCceeeeeccccCCCCc
Q 013717           71 LQKLSPDETINFSSASHLC--INSVQLGHKLPIGCIAVH--HNFLYAASSH--EINVYDRT--GTTWTSINTFNDNDSSS  142 (437)
Q Consensus        71 ~~s~s~dg~i~~~~~~~~~--~~~~~~~h~~~V~~l~~~--~~~l~s~~~d--~v~vwd~~--~~~~~~~~~~~~~~~h~  142 (437)
                      +++.+.++.|.+|+.+...  .....+.|...+.+++|+  +++|++++.+  .|.+|++.  ++....+..+.   .+ 
T Consensus         8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~-   83 (343)
T 1ri6_A            8 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA---LP-   83 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE---CS-
T ss_pred             EEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc---cC-
Confidence            3444679999999985333  344445788899999998  8888888764  99999998  55555555542   22 


Q ss_pred             ccEEEEEEeCCe--EEEEe-cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEE
Q 013717          143 GSVKSVTFCDGK--IFTAH-QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA  219 (437)
Q Consensus       143 ~~v~~l~~~~~~--l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  219 (437)
                      ..+..++|+++.  +++++ .++.|.+||+..+........+                            .....+.+++
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~----------------------------~~~~~~~~~~  135 (343)
T 1ri6_A           84 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV----------------------------EGLDGCHSAN  135 (343)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE----------------------------CCCTTBCCCE
T ss_pred             CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc----------------------------cCCCCceEEE
Confidence            378899999765  55554 5899999999533211111111                            1334578889


Q ss_pred             eCC--CeEEEEE-CCCcEEEEECCC-cceEE----Eeec-ccccEEEEEEecCCe-EEEE-eCCCeEEEecCCCCcccce
Q 013717          220 VNN--GLIYSVS-WDKSLKIWRASD-LRCLE----SIKA-HEDAVNAVAVSAGGT-VYTG-SADRKIRVWAKPFNEKRHA  288 (437)
Q Consensus       220 ~~~--~~l~~~~-~dg~i~iwd~~~-~~~~~----~~~~-~~~~v~~~~~~~~~~-l~~~-~~dg~v~iwd~~~~~~~~~  288 (437)
                      |++  +++++++ .++.|++||+.+ ++...    .+.. ....+..++|+|++. ++++ ..++.|.+||+........
T Consensus       136 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~  215 (343)
T 1ri6_A          136 ISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE  215 (343)
T ss_dssp             ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred             ECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence            988  6777777 899999999987 65432    2222 345788999999998 5544 4789999999864322222


Q ss_pred             eeEEeeC---c---cccEEEEEEccCCCEEEEE-eCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEE
Q 013717          289 LIATLEK---H---KSAVNALALSDDGTVLFSG-ACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSG  359 (437)
Q Consensus       289 ~~~~~~~---~---~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~  359 (437)
                      .......   .   ...+..++|+|+|++|+++ ..++.|.+||+............+..+.. +..++++  +++|+++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~  294 (343)
T 1ri6_A          216 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAA  294 (343)
T ss_dssp             EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEE
T ss_pred             EEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEe
Confidence            2222221   1   2357789999999988754 47899999999842222223333333333 5555555  5577777


Q ss_pred             e-CCCcEEEeeCC--CCCCeeeeeeecCCCCCeeEEEEEccCC
Q 013717          360 S-ADRTVRIWQRG--SDGRFGCLAVLEGHTKPVKSLTAVTEEG  399 (437)
Q Consensus       360 ~-~dg~i~iwd~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~  399 (437)
                      + .++.|.+|++.  +++ ...+..+... ....+++|.++.+
T Consensus       295 ~~~~~~v~v~~~d~~~g~-~~~~~~~~~g-~~p~~i~~~~~~~  335 (343)
T 1ri6_A          295 GQKSHHISVYEIVGEQGL-LHEKGRYAVG-QGPMWVVVNAHEG  335 (343)
T ss_dssp             CTTTCEEEEEEEETTTTE-EEEEEEEECS-SSCCEEEEEEEC-
T ss_pred             cCCCCeEEEEEEcCCCce-eeEccccccC-CCCeeEEEEcccC
Confidence            6 68999999654  433 3345555442 4567888888764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=3.2e-21  Score=172.29  Aligned_cols=273  Identities=8%  Similarity=0.059  Sum_probs=180.3

Q ss_pred             CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEe-cCCeEEEEeCCCCcc-cccccccC
Q 013717          108 HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAH-QDCKIRVWQLTPTKH-HKLKTTLP  182 (437)
Q Consensus       108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~-~dg~i~iwd~~~~~~-~~~~~~~~  182 (437)
                      +..+++++.+ .|.+||..+++.......     +...+ .++|++++  +++++ .++.|.+||+.+++. ....    
T Consensus        10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-----~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~----   79 (331)
T 3u4y_A           10 NFGIVVEQHLRRISFFSTDTLEILNQITL-----GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI----   79 (331)
T ss_dssp             CEEEEEEGGGTEEEEEETTTCCEEEEEEC-----CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE----
T ss_pred             CEEEEEecCCCeEEEEeCcccceeeeEEc-----cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec----
Confidence            4456677777 999999998655443332     44556 99999765  55554 489999999988764 2211    


Q ss_pred             ccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCC---cEEEEECCCcceEEEeecccccEEE
Q 013717          183 TVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDK---SLKIWRASDLRCLESIKAHEDAVNA  257 (437)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~  257 (437)
                                                ..+..+..++++++  ++++++..++   .|.+||+.+++.+..+.. .....+
T Consensus        80 --------------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~  132 (331)
T 3u4y_A           80 --------------------------QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVG  132 (331)
T ss_dssp             --------------------------EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEE
T ss_pred             --------------------------ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccc
Confidence                                      22444554588988  6777544443   899999999998887764 445789


Q ss_pred             EEEecCCe-EEE-EeCCCe-EEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE-eCCCcEEEEECCCCccce
Q 013717          258 VAVSAGGT-VYT-GSADRK-IRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG-ACDRSILVWDREDSANHM  333 (437)
Q Consensus       258 ~~~~~~~~-l~~-~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~  333 (437)
                      ++|+|+|+ +++ ...++. |.+|++...................+..++|+|+|++++++ ..++.|++||+.+++...
T Consensus       133 ~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~  212 (331)
T 3u4y_A          133 IAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT  212 (331)
T ss_dssp             EEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE
T ss_pred             eEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc
Confidence            99999997 544 455688 99999874332211112222345568999999999966554 468999999998876511


Q ss_pred             EEeeeecccccceEEEEee--CCEEEEE-eCCCcEEEeeCCCCCCeeeeeeecCC----CC---CeeEEEEEccCCCCce
Q 013717          334 VVTGALRGHGKAILCLINV--AGLLMSG-SADRTVRIWQRGSDGRFGCLAVLEGH----TK---PVKSLTAVTEEGQNGV  403 (437)
Q Consensus       334 ~~~~~~~~~~~~i~~~~~~--~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~h----~~---~v~~l~~~~~~~~~~~  403 (437)
                      . ...+.. ...+..+.++  +++++++ ..++.|.+||+.+++. ..+..+..+    ..   ....++|+|++..   
T Consensus       213 ~-~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~---  286 (331)
T 3u4y_A          213 L-LNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL-SFVKSFGHGLLIDPRPLFGANQMALNKTETK---  286 (331)
T ss_dssp             E-EEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE-EEEEEEECCCCCCCGGGTTCCCEEECTTSSE---
T ss_pred             e-eeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce-eeecccccccccCCCCcccccceEECCCCCE---
Confidence            1 222222 2334444554  5555554 4578899999987652 123333322    22   2356899999863   


Q ss_pred             EEEEEecCCCcEEEEeeccCC
Q 013717          404 VSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       404 ~~l~s~~~dg~i~iw~~~~~~  424 (437)
                       +++++..++.|++||+....
T Consensus       287 -l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          287 -LFISANISRELKVFTISGKV  306 (331)
T ss_dssp             -EEEEETTTTEEEEEETTSCE
T ss_pred             -EEEecCCCCcEEEEEecCCc
Confidence             55667778899999998654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.90  E-value=1.4e-21  Score=193.87  Aligned_cols=330  Identities=13%  Similarity=0.054  Sum_probs=215.5

Q ss_pred             cceeeccccccccccCC-Cc-----eeEEecCCCcceeeeecCcc------------------------CCeEEEEee--
Q 013717           60 LSLQTLPSVPSLQKLSP-DE-----TINFSSASHLCINSVQLGHK------------------------LPIGCIAVH--  107 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~-dg-----~i~~~~~~~~~~~~~~~~h~------------------------~~V~~l~~~--  107 (437)
                      ..+.++|....+++.+. |+     .|.+|+..........-.|.                        ..|.+++|+  
T Consensus        40 ~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpD  119 (741)
T 2ecf_A           40 MKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPD  119 (741)
T ss_dssp             EEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTT
T ss_pred             CCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCC
Confidence            46789999999999988 88     89999987644332222333                        238899999  


Q ss_pred             CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccc
Q 013717          108 HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVN  185 (437)
Q Consensus       108 ~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  185 (437)
                      |++|++++.+.|.+||+.++.......+   ..|...+..++|+|++  |+.++ ++.|.+||+.+++.........   
T Consensus       120 g~~l~~~~~~~i~~~d~~~~~~~~~~~l---~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~---  192 (741)
T 2ecf_A          120 AQRLLFPLGGELYLYDLKQEGKAAVRQL---THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGS---  192 (741)
T ss_dssp             SSEEEEEETTEEEEEESSSCSTTSCCBC---CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCC---
T ss_pred             CCEEEEEeCCcEEEEECCCCCcceEEEc---ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCc---
Confidence            8999999878999999998510012222   3577889999999876  66555 6799999998875433221100   


Q ss_pred             cceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCC-------------------------------
Q 013717          186 DRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDK-------------------------------  232 (437)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg-------------------------------  232 (437)
                      ..          +. .....-+.......+.++.|+|  ++|++++.|+                               
T Consensus       193 ~~----------~~-~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          193 TT----------IG-NGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             SS----------EE-ESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             cc----------ee-ccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            00          00 0000000000112246788888  7777777665                               


Q ss_pred             --cEEEEECCC-cceEEEee--cccccEEEEEEecCCe-EEEEeC-----CCeEEEecCCCCcccceeeEEeeCccc---
Q 013717          233 --SLKIWRASD-LRCLESIK--AHEDAVNAVAVSAGGT-VYTGSA-----DRKIRVWAKPFNEKRHALIATLEKHKS---  298 (437)
Q Consensus       233 --~i~iwd~~~-~~~~~~~~--~~~~~v~~~~~~~~~~-l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~---  298 (437)
                        .|.+||+.+ ++......  .+...+..++| |||+ |++++.     +..|.+||+.+..    ....+..+..   
T Consensus       262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~----~~~~~~~~~~~~~  336 (741)
T 2ecf_A          262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ----QRVLAHETSPTWV  336 (741)
T ss_dssp             EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC----EEEEEEEECSSCC
T ss_pred             eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc----eEEEEEcCCCCcC
Confidence              789999988 87654433  36778999999 9998 666543     5789999987543    2233333322   


Q ss_pred             -cEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEE-Eee--CCEE-EEEeCCC--cEEEeeCC
Q 013717          299 -AVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCL-INV--AGLL-MSGSADR--TVRIWQRG  371 (437)
Q Consensus       299 -~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~-~~~--~~~l-~~~~~dg--~i~iwd~~  371 (437)
                       .+..++|+|||+++++++.||.++||.+.....    ...+..+...+..+ .++  ++.| ++++.++  .++||++.
T Consensus       337 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~----~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          337 PLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK----AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             CCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC----EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred             CcCCceEECCCCeEEEEecCCCccEEEEEcCCCC----eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence             456889999999999999999888887763222    22344556666554 344  5555 4555565  89999986


Q ss_pred             CCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC---CcEEEEeeccC
Q 013717          372 SDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD---GEIRAWQVSVS  423 (437)
Q Consensus       372 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~  423 (437)
                      ...  .....+.. ...+..++|+|++..    ++++.+..   +.+.+|+...+
T Consensus       413 ~~g--~~~~~l~~-~~~~~~~~~spdg~~----l~~~~~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          413 LQG--GQPQRLSK-APGMHSASFARNASV----YVDSWSNNSTPPQIELFRANGE  460 (741)
T ss_dssp             TTC--CCCEECCC-SCSEEEEEECTTSSE----EEEEEEETTEEEEEEEEETTSC
T ss_pred             cCC--CCeeeccc-CCCceEEEECCCCCE----EEEEecCCCCCCeEEEEEcCCC
Confidence            532  23455554 667889999999863    44454443   46888886543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.90  E-value=3.9e-21  Score=190.74  Aligned_cols=279  Identities=10%  Similarity=0.078  Sum_probs=197.4

Q ss_pred             cCCeEEEEee--CCEEEEEec-C------eEEEEeCCCCceeeeeccccCCCCc----------------------ccEE
Q 013717           98 KLPIGCIAVH--HNFLYAASS-H------EINVYDRTGTTWTSINTFNDNDSSS----------------------GSVK  146 (437)
Q Consensus        98 ~~~V~~l~~~--~~~l~s~~~-d------~v~vwd~~~~~~~~~~~~~~~~~h~----------------------~~v~  146 (437)
                      ...|.+++|+  |++|++++. +      .|++||+.+++...+...   ..+.                      ..|.
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDS---KVVLPGTETLSDEEKARRERQRIAAMTGIV  112 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECG---GGTC--------------------CCEESC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccch---hhcccccccccchhhhhhhhhhhccccCcc
Confidence            4578999999  899999886 3      699999998755544433   1122                      3488


Q ss_pred             EEEEeCCe--EEEEecCCeEEEEeCCCC---cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717          147 SVTFCDGK--IFTAHQDCKIRVWQLTPT---KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN  221 (437)
Q Consensus       147 ~l~~~~~~--l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  221 (437)
                      +++|+|++  |++++. +.|.+||+.++   +....                               ..|...+..++|+
T Consensus       113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l-------------------------------~~~~~~~~~~~~S  160 (741)
T 2ecf_A          113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL-------------------------------THGEGFATDAKLS  160 (741)
T ss_dssp             CCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC-------------------------------CCSSSCEEEEEEC
T ss_pred             eeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc-------------------------------ccCCcccccccCC
Confidence            99999876  666665 99999999877   32221                               1366789999999


Q ss_pred             C--CeEEEEECCCcEEEEECCCcceEEEeeccccc----------------EEEEEEecCCe-EEEEeCCC---------
Q 013717          222 N--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDA----------------VNAVAVSAGGT-VYTGSADR---------  273 (437)
Q Consensus       222 ~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------------v~~~~~~~~~~-l~~~~~dg---------  273 (437)
                      |  ++|+.++ ++.|++||+.+++.......+...                +.+++|+|||+ |++++.|+         
T Consensus       161 PDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~  239 (741)
T 2ecf_A          161 PKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRY  239 (741)
T ss_dssp             TTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEE
T ss_pred             CCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecC
Confidence            9  6777776 569999999988766554433332                47899999999 88887765         


Q ss_pred             ------------------------eEEEecCCC-CcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-----CCcEEE
Q 013717          274 ------------------------KIRVWAKPF-NEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-----DRSILV  323 (437)
Q Consensus       274 ------------------------~v~iwd~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i  323 (437)
                                              .|.+||+.. ...  ..+.....+...+..++| |||++|++++.     +..|++
T Consensus       240 ~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~  316 (741)
T 2ecf_A          240 EVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT--QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVE  316 (741)
T ss_dssp             EECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC--EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEE
T ss_pred             CCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce--EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEE
Confidence                                    788898865 431  111111146778999999 99999987754     678999


Q ss_pred             EECCCCccceEEeeeecccccce--EEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEE-EEEccCCC
Q 013717          324 WDREDSANHMVVTGALRGHGKAI--LCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSL-TAVTEEGQ  400 (437)
Q Consensus       324 ~d~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l-~~~~~~~~  400 (437)
                      ||+.+++..........+....+  ..+..+++++++++.||.++||.+....  . ...+..|...|..+ .|+|++..
T Consensus       317 ~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~--~-~~~l~~~~~~v~~~~~~s~dg~~  393 (741)
T 2ecf_A          317 VTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG--K-AAALTHGNWSVDELLAVDEKAGL  393 (741)
T ss_dssp             EETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS--C-EEESCCSSSCEEEEEEEETTTTE
T ss_pred             EECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC--C-eeeeeecceEEEeEeEEeCCCCE
Confidence            99998764433322111110022  3444456688899999988888876433  2 56777788889887 59999863


Q ss_pred             CceEEEEEecCCC--cEEEEeecc
Q 013717          401 NGVVSVFSGSLDG--EIRAWQVSV  422 (437)
Q Consensus       401 ~~~~~l~s~~~dg--~i~iw~~~~  422 (437)
                          ++++++.|+  .+++|++..
T Consensus       394 ----l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          394 ----AYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             ----EEEEECSSCTTCBEEEEEET
T ss_pred             ----EEEEEeCCCCceEEEEEEEc
Confidence                566777776  899999975

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=3.9e-21  Score=197.25  Aligned_cols=310  Identities=9%  Similarity=0.021  Sum_probs=220.8

Q ss_pred             cceeeccccccccccCCC------ceeEEecCCCcceeeeec-CccCCe-------EEEEee--CCEEEEEec------C
Q 013717           60 LSLQTLPSVPSLQKLSPD------ETINFSSASHLCINSVQL-GHKLPI-------GCIAVH--HNFLYAASS------H  117 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~d------g~i~~~~~~~~~~~~~~~-~h~~~V-------~~l~~~--~~~l~s~~~------d  117 (437)
                      ..+.++|....++..+.+      ..|.+|+.....  ...+ +|...+       .+++|+  |+++++++.      .
T Consensus        56 ~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~--~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~  133 (1045)
T 1k32_A           56 NNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE--IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSM  133 (1045)
T ss_dssp             EEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE--EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTC
T ss_pred             cCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC--eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCccc
Confidence            467889999988877543      478889886543  4455 888888       999999  777777773      2


Q ss_pred             -eEEEEeCCCCceeeeecc--------------------------------------------ccCCCCcccEEEEEEeC
Q 013717          118 -EINVYDRTGTTWTSINTF--------------------------------------------NDNDSSSGSVKSVTFCD  152 (437)
Q Consensus       118 -~v~vwd~~~~~~~~~~~~--------------------------------------------~~~~~h~~~v~~l~~~~  152 (437)
                       .|.+|++.++....+...                                            ....+|...+.++.|++
T Consensus       134 ~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~  213 (1045)
T 1k32_A          134 TCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG  213 (1045)
T ss_dssp             CEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET
T ss_pred             ceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeC
Confidence             688888877543321110                                            00124666777888887


Q ss_pred             Ce-EEEEecCCeEEEEeCCC-CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEE
Q 013717          153 GK-IFTAHQDCKIRVWQLTP-TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSV  228 (437)
Q Consensus       153 ~~-l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~  228 (437)
                      +. +++++.|+.+++|.++. +.....+                              ..|. .+...+|+|  +.++.+
T Consensus       214 d~l~~~~~~dg~~~l~~~~~~g~~~~~l------------------------------~~~~-~~~~~~~SpDG~~la~~  262 (1045)
T 1k32_A          214 HRIYFITDIDGFGQIYSTDLDGKDLRKH------------------------------TSFT-DYYPRHLNTDGRRILFS  262 (1045)
T ss_dssp             TEEEEEECTTSSCEEEEEETTSCSCEEC------------------------------CCCC-SSCEEEEEESSSCEEEE
T ss_pred             CEEEEEEeccCceEEEEEeCCCCcceEe------------------------------cCCC-CcceeeEcCCCCEEEEE
Confidence            77 45666778888887653 2111111                              1232 344556666  667766


Q ss_pred             ECCCcEEEEECCCcceEEEeec-----------ccccEEEEEEe-cCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC
Q 013717          229 SWDKSLKIWRASDLRCLESIKA-----------HEDAVNAVAVS-AGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK  295 (437)
Q Consensus       229 ~~dg~i~iwd~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  295 (437)
                       .++.|.+||+...+ +..+..           +...+.+++|+ |+|+ +++++ ++.|.+|++....     ...+..
T Consensus       263 -~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-----~~~~~~  334 (1045)
T 1k32_A          263 -KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-----VLKVPE  334 (1045)
T ss_dssp             -ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-----EEECSC
T ss_pred             -eCCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-----eEEccC
Confidence             58999999995443 335443           33468999999 9998 77776 8899999886432     233455


Q ss_pred             ccc-cEEEEEEccCCCEEEEEeCCCcEE-EEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCC
Q 013717          296 HKS-AVNALALSDDGTVLFSGACDRSIL-VWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRG  371 (437)
Q Consensus       296 ~~~-~i~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~  371 (437)
                      +.. .+..++|+ ||+.|+.++.++.+. +||+..++.    . .+.+|...+..+.++++  +|++++.++.|++||+.
T Consensus       335 ~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~----~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~  408 (1045)
T 1k32_A          335 PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA----E-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE  408 (1045)
T ss_dssp             CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE----E-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc----e-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECC
Confidence            666 89999999 999999998888898 999876542    1 12356677777777654  99999999999999999


Q ss_pred             CCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCC----------cEEEEeeccCC
Q 013717          372 SDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDG----------EIRAWQVSVSC  424 (437)
Q Consensus       372 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg----------~i~iw~~~~~~  424 (437)
                      +++   ....+.+|...+.+++|+|++.     +|++++.++          .|++||+.+++
T Consensus       409 tg~---~~~~~~~~~~~v~~~~~SpDG~-----~la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          409 TGK---PTVIERSREAMITDFTISDNSR-----FIAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             TCC---EEEEEECSSSCCCCEEECTTSC-----EEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             CCc---eEEeccCCCCCccceEECCCCC-----eEEEEecCccccccCCCCCeEEEEECCCCc
Confidence            876   5556668999999999999985     677776544          89999998764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=4.3e-21  Score=189.38  Aligned_cols=317  Identities=6%  Similarity=0.004  Sum_probs=200.4

Q ss_pred             cccccccCCCceeEEecCCCccee-eeecCcc-----------------CCeEEEEee-CCEEEEEecCeEEEEeCCCCc
Q 013717           68 VPSLQKLSPDETINFSSASHLCIN-SVQLGHK-----------------LPIGCIAVH-HNFLYAASSHEINVYDRTGTT  128 (437)
Q Consensus        68 ~~~~~s~s~dg~i~~~~~~~~~~~-~~~~~h~-----------------~~V~~l~~~-~~~l~s~~~d~v~vwd~~~~~  128 (437)
                      ...+...+.++ | +|+....... ...+.|.                 ..|.+++|+ .++++.+....|++||+.+++
T Consensus        35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~~~~~i~~~d~~~~~  112 (706)
T 2z3z_A           35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLFTQGGLVGFDMLARK  112 (706)
T ss_dssp             TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEEETTEEEEEETTTTE
T ss_pred             CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEEECCEEEEEECCCCc
Confidence            34455566677 7 9998665442 2233333                 579999999 555555544599999999864


Q ss_pred             eeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCC-----CcccccccccCccccceeeecCCCCeeEEe
Q 013717          129 WTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTP-----TKHHKLKTTLPTVNDRLLRFMLPNSYVTVR  201 (437)
Q Consensus       129 ~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (437)
                      ...+.      .+...+.+++|+|++  |++ ..|+.|++||+.+     ++.........   ..          +. .
T Consensus       113 ~~~l~------~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~---~~----------~~-~  171 (706)
T 2z3z_A          113 VTYLF------DTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGT---ET----------LV-Y  171 (706)
T ss_dssp             EEEEE------CCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCB---TT----------EE-E
T ss_pred             eEEcc------CCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCC---CC----------eE-c
Confidence            43332      356678889999876  555 5789999999987     55332221100   00          00 0


Q ss_pred             eccceeeecCCCcEEEEEeCC--CeEEEEE---------------------------------CCCcEEEEECCCcceEE
Q 013717          202 RHKKKLWIEHGDAVTGLAVNN--GLIYSVS---------------------------------WDKSLKIWRASDLRCLE  246 (437)
Q Consensus       202 ~~~~~~~~~~~~~v~~~~~~~--~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~  246 (437)
                      ...  +...+...+.++.|+|  ++|++++                                 .+..|++||+.+++...
T Consensus       172 g~~--~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~  249 (706)
T 2z3z_A          172 GQA--VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY  249 (706)
T ss_dssp             SSC--CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE
T ss_pred             ccc--hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe
Confidence            000  1112233467888988  7788776                                 44779999999887654


Q ss_pred             Eee--cccccEEEEEEecCCe-EEEEeCCC-----eEEEecCCCCcccceeeEEeeCcc---ccEEEEEEcc--CCCEEE
Q 013717          247 SIK--AHEDAVNAVAVSAGGT-VYTGSADR-----KIRVWAKPFNEKRHALIATLEKHK---SAVNALALSD--DGTVLF  313 (437)
Q Consensus       247 ~~~--~~~~~v~~~~~~~~~~-l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~---~~i~~~~~~~--~~~~l~  313 (437)
                      ...  .+...+.+++|+|||+ |++++.++     .|.+||+.+..... .+.. ..+.   ..+..++|+|  ||++++
T Consensus       250 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~-~~~~-~~~~~~~~~~~~~~~sp~~dg~~l~  327 (706)
T 2z3z_A          250 LQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVR-TLFV-ETDKHYVEPLHPLTFLPGSNNQFIW  327 (706)
T ss_dssp             CCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEE-EEEE-EECSSCCCCCSCCEECTTCSSEEEE
T ss_pred             eccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceee-EEEE-ccCCCeECccCCceeecCCCCEEEE
Confidence            442  4567799999999998 88877775     89999987652111 1111 1112   1246789999  999999


Q ss_pred             EEeCCCcEEEEECC-CCccceEEeeeecccccceEE-EEee--CCEEE-EEeCCC----cEEEeeCCCCCCeeeeeeecC
Q 013717          314 SGACDRSILVWDRE-DSANHMVVTGALRGHGKAILC-LINV--AGLLM-SGSADR----TVRIWQRGSDGRFGCLAVLEG  384 (437)
Q Consensus       314 ~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~i~~-~~~~--~~~l~-~~~~dg----~i~iwd~~~~~~~~~~~~~~~  384 (437)
                      +++.||.+++|++. +++    ....+..+...+.. +.++  ++.|+ ++..++    .|..||+.++.    ...+. 
T Consensus       328 ~~~~~g~~~l~~~~~~~~----~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~l~-  398 (706)
T 2z3z_A          328 QSRRDGWNHLYLYDTTGR----LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK----TKDLT-  398 (706)
T ss_dssp             EECTTSSCEEEEEETTSC----EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC----CEESC-
T ss_pred             EEccCCccEEEEEECCCC----EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC----ceecc-
Confidence            99999999999876 332    22334455555654 4555  44554 444454    56666776644    23333 


Q ss_pred             CCCCeeEEEEEccCCCCceEEEEEecCC---CcEEEEeeccCC
Q 013717          385 HTKPVKSLTAVTEEGQNGVVSVFSGSLD---GEIRAWQVSVSC  424 (437)
Q Consensus       385 h~~~v~~l~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~~  424 (437)
                      |...+.+++|+|++..    ++++++.+   +.|++||+++++
T Consensus       399 ~~~~~~~~~~spdg~~----l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          399 PESGMHRTQLSPDGSA----IIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             CSSSEEEEEECTTSSE----EEEEEECSSCSCEEEEEESSSCE
T ss_pred             CCCceEEEEECCCCCE----EEEEecCCCCCcEEEEEECCCCe
Confidence            6778999999999852    44444443   569999988764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=2.1e-20  Score=168.14  Aligned_cols=266  Identities=13%  Similarity=0.171  Sum_probs=173.9

Q ss_pred             eEEEEeC--CCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEec---CCeEEEEeCCCCcccccccccCccccceeee
Q 013717          118 EINVYDR--TGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQ---DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRF  191 (437)
Q Consensus       118 ~v~vwd~--~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  191 (437)
                      .|.+|++  ++++...+...    .+...+..++|++++ |++++.   ++.|.+|++.+++... +..           
T Consensus        17 ~i~v~~~d~~tg~~~~~~~~----~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~-~~~-----------   80 (347)
T 3hfq_A           17 GIYQGTLDTTAKTLTNDGLL----AATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHK-LNT-----------   80 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEE----EECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEE-EEE-----------
T ss_pred             CEEEEEEcCCCCeEEEeeee----eccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEE-eee-----------
Confidence            5666655  45544443332    345677889999776 666655   6899999997654211 111           


Q ss_pred             cCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE-CCCcEEEEECCC-c--ceEEEeec---------ccccEE
Q 013717          192 MLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS-WDKSLKIWRASD-L--RCLESIKA---------HEDAVN  256 (437)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~-~--~~~~~~~~---------~~~~v~  256 (437)
                                      +..+...+..+++++  ++|++++ .++.|.+|++.. +  +.+..+..         ....+.
T Consensus        81 ----------------~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~  144 (347)
T 3hfq_A           81 ----------------VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIH  144 (347)
T ss_dssp             ----------------EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEE
T ss_pred             ----------------eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCce
Confidence                            123566778899988  6788777 789999999963 2  23333321         112488


Q ss_pred             EEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC-ccccEEEEEEccCCCEEEE-EeCCCcEEEEECCCCccce
Q 013717          257 AVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK-HKSAVNALALSDDGTVLFS-GACDRSILVWDREDSANHM  333 (437)
Q Consensus       257 ~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~  333 (437)
                      +++|+|+|+ +++...++.|.+||+.... .......+.. ....+..++|+|||+++++ ...++.|.+|++.......
T Consensus       145 ~~~~spdg~l~v~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~  223 (347)
T 3hfq_A          145 YTDLTPDNRLAVIDLGSDKVYVYNVSDAG-QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF  223 (347)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEEEECTTS-CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             EEEECCCCcEEEEeCCCCEEEEEEECCCC-cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce
Confidence            999999999 6666678999999987322 1122222222 2346788999999996665 5568899999987522222


Q ss_pred             EEeeeecccc------cceEEEEee--CCEE-EEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceE
Q 013717          334 VVTGALRGHG------KAILCLINV--AGLL-MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVV  404 (437)
Q Consensus       334 ~~~~~~~~~~------~~i~~~~~~--~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~  404 (437)
                      ..........      ..+..++++  +++| ++...++.|.+|++........+..+..+...+..++|+|++.     
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~-----  298 (347)
T 3hfq_A          224 TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEA-----  298 (347)
T ss_dssp             EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSS-----
T ss_pred             EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCC-----
Confidence            2222222211      235556665  4455 5566789999999974434456777777777899999999985     


Q ss_pred             EEEEec-CCCcEEEEeec
Q 013717          405 SVFSGS-LDGEIRAWQVS  421 (437)
Q Consensus       405 ~l~s~~-~dg~i~iw~~~  421 (437)
                      +|++++ .++.|.+|+++
T Consensus       299 ~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          299 FVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEEEEETTTTEEEEEEEC
T ss_pred             EEEEEEcCCCcEEEEEEe
Confidence            455554 56899999664

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=2.9e-21  Score=169.33  Aligned_cols=249  Identities=9%  Similarity=0.040  Sum_probs=174.1

Q ss_pred             EecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCC-CcccccccccCcccccee
Q 013717          114 ASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTP-TKHHKLKTTLPTVNDRLL  189 (437)
Q Consensus       114 ~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~  189 (437)
                      ++.+ .|++||+.+++...+.      .|...|.+++|+|+.  |+++ .++.|.+||+.+ ++.......         
T Consensus        18 ~~~~~~i~~~d~~~~~~~~~~------~~~~~v~~~~~spdg~~l~~~-~~~~i~~~d~~~~~~~~~~~~~---------   81 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRVVW------QTPELFEAPNWSPDGKYLLLN-SEGLLYRLSLAGDPSPEKVDTG---------   81 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEEEE------EESSCCEEEEECTTSSEEEEE-ETTEEEEEESSSCCSCEECCCT---------
T ss_pred             CCcceeEEEEeCCCCceeeec------cCCcceEeeEECCCCCEEEEE-cCCeEEEEeCCCCCCceEeccc---------
Confidence            3456 9999999986544322      478899999999776  5555 489999999988 654332210         


Q ss_pred             eecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE--CCCc--EEEEECCCcceEEEeecccccEEEEEEecC
Q 013717          190 RFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS--WDKS--LKIWRASDLRCLESIKAHEDAVNAVAVSAG  263 (437)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~--~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  263 (437)
                                          .+...+.+++|+|  +++++++  .++.  |..++..+++ ...+.. ...+..++|+|+
T Consensus        82 --------------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~spd  139 (297)
T 2ojh_A           82 --------------------FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK-NLPSYWHGWSPD  139 (297)
T ss_dssp             --------------------TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCS-SSSEEEEEECTT
T ss_pred             --------------------cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeec-CCCccceEECCC
Confidence                                1246778899988  7888888  3344  4445555554 344443 334899999999


Q ss_pred             Ce-EE-EEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCccceEEeeeec
Q 013717          264 GT-VY-TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSANHMVVTGALR  340 (437)
Q Consensus       264 ~~-l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~  340 (437)
                      ++ ++ ++..++.+++|+++....   ....+..+...+.+++|+|+|++|+.++ .++.+.+|++......   ...+.
T Consensus       140 g~~l~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~---~~~~~  213 (297)
T 2ojh_A          140 GKSFTYCGIRDQVFDIYSMDIDSG---VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS---VERIT  213 (297)
T ss_dssp             SSEEEEEEEETTEEEEEEEETTTC---CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC---EEECC
T ss_pred             CCEEEEEECCCCceEEEEEECCCC---cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCC---cEEEe
Confidence            98 55 788899999998643321   2345556778899999999999888766 5899999998632222   22344


Q ss_pred             ccccceEEEEeeCC--EEEEEeCC-----------CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEE
Q 013717          341 GHGKAILCLINVAG--LLMSGSAD-----------RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVF  407 (437)
Q Consensus       341 ~~~~~i~~~~~~~~--~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~  407 (437)
                      .|...+..+.++++  +|++++.+           +.|++||+.+++ ...+..+.+|...+.+++|+|++.     +|+
T Consensus       214 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~spdg~-----~l~  287 (297)
T 2ojh_A          214 DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN-VETLFDLFGGQGTMNSPNWSPDGD-----EFA  287 (297)
T ss_dssp             CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS-CEEEEEEEESTTTSCSCCBCTTSS-----EEE
T ss_pred             cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC-ceeeeccCCCCcccccceECCCCC-----EEE
Confidence            56667777777654  77777765           569999998765 234555667888999999999985     466


Q ss_pred             EecCC
Q 013717          408 SGSLD  412 (437)
Q Consensus       408 s~~~d  412 (437)
                      +++.|
T Consensus       288 ~~~~~  292 (297)
T 2ojh_A          288 YVRYF  292 (297)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            55554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=1.2e-20  Score=168.72  Aligned_cols=266  Identities=11%  Similarity=0.100  Sum_probs=183.3

Q ss_pred             CEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcc-cEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCc
Q 013717          109 NFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSG-SVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPT  183 (437)
Q Consensus       109 ~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  183 (437)
                      ++|++++.+ .|.+||..+++.  +..+.  .++.. .+..++|+++.   ++++..++.|.+||+.+++....+.....
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~--~~~~~--~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~   77 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAV--DKVIT--IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEE--EEEEE--CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT
T ss_pred             cEEEEcCCCCeEEEEECCCCcE--EEEEE--cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc
Confidence            578899988 999999998643  33331  12222 47889999764   45666789999999988764433221000


Q ss_pred             cccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE------------CCCcEEEEECCCcceEEEee
Q 013717          184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS------------WDKSLKIWRASDLRCLESIK  249 (437)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~------------~dg~i~iwd~~~~~~~~~~~  249 (437)
                                               ..+...+.++++++  ++++++.            .++.|.+||+.+++.+..+.
T Consensus        78 -------------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  132 (337)
T 1pby_B           78 -------------------------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE  132 (337)
T ss_dssp             -------------------------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE
T ss_pred             -------------------------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe
Confidence                                     00112455788887  5777775            57999999999988887776


Q ss_pred             cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC---------
Q 013717          250 AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR---------  319 (437)
Q Consensus       250 ~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------  319 (437)
                      . ...+.+++|+|+++ ++++  ++.|.+||+....    ....+..+.. ...+.|+|+|++++..+.++         
T Consensus       133 ~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~----~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~  204 (337)
T 1pby_B          133 A-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGT----LVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYT  204 (337)
T ss_dssp             C-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTE----EEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred             C-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCc----Eeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeec
Confidence            4 45688899999998 7776  6899999987543    3444443320 11237899998776554332         


Q ss_pred             ---------------cEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeee
Q 013717          320 ---------------SILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVL  382 (437)
Q Consensus       320 ---------------~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~  382 (437)
                                     .|.+||+.+++..   ......+...+.++.++++  +++++  ++.|++||+.+++   .+..+
T Consensus       205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~---~~~~~  276 (337)
T 1pby_B          205 ARKDIDPADPTAYRTGLLTMDLETGEMA---MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA---SIKRV  276 (337)
T ss_dssp             EBTTSCTTSGGGEEEEEEEEETTTCCEE---EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE---EEEEE
T ss_pred             cccccccccccccccceEEEeCCCCCce---EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc---Cccee
Confidence                           4689999887643   2223345556666666654  77777  7899999998765   44555


Q ss_pred             cCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          383 EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       383 ~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      .. ...+.+++|+|++.     +|++++.|+.|++||+.+++.
T Consensus       277 ~~-~~~~~~~~~s~dg~-----~l~~~~~~~~i~v~d~~~~~~  313 (337)
T 1pby_B          277 PL-PHSYYSVNVSTDGS-----TVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             EC-SSCCCEEEECTTSC-----EEEEESBSSEEEEEETTTCCE
T ss_pred             cC-CCceeeEEECCCCC-----EEEEEcCCCcEEEEECcCCcE
Confidence            43 34678999999885     677778899999999988764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.88  E-value=1.6e-19  Score=162.67  Aligned_cols=265  Identities=11%  Similarity=0.057  Sum_probs=183.8

Q ss_pred             CccCCeEEEEee--CCEEEEEec-------C-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe---EEEEecCC
Q 013717           96 GHKLPIGCIAVH--HNFLYAASS-------H-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDC  162 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~-------d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg  162 (437)
                      .....+..++|+  ++++++++.       + .|.+||..+++.  ...+.    ....+..++|++++   +++...++
T Consensus        38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~--~~~~~----~~~~~~~~~~s~dg~~l~v~~~~~~  111 (353)
T 3vgz_A           38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV--TQAIH----NDLKPFGATINNTTQTLWFGNTVNS  111 (353)
T ss_dssp             EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE--EEEEE----ESSCCCSEEEETTTTEEEEEETTTT
T ss_pred             hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE--EEEEe----cCCCcceEEECCCCCEEEEEecCCC
Confidence            445678899999  778887772       5 899999998543  33331    23447788998654   45556689


Q ss_pred             eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE--CCCcEEEEE
Q 013717          163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS--WDKSLKIWR  238 (437)
Q Consensus       163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~--~dg~i~iwd  238 (437)
                      .|.+||..+++....+..-.....                     -......+.++++++  +.+++++  .++.|.+||
T Consensus       112 ~v~~~d~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d  170 (353)
T 3vgz_A          112 AVTAIDAKTGEVKGRLVLDDRKRT---------------------EEVRPLQPRELVADDATNTVYISGIGKESVIWVVD  170 (353)
T ss_dssp             EEEEEETTTCCEEEEEESCCCCCC---------------------SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred             EEEEEeCCCCeeEEEEecCCCccc---------------------cccCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence            999999998865443321000000                     000111367889987  6666665  478999999


Q ss_pred             CCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC----ccccEEEEEEccCCCEEE
Q 013717          239 ASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK----HKSAVNALALSDDGTVLF  313 (437)
Q Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~  313 (437)
                      ..+++.+..+..+...+.+++|+|++. ++++..++.|.+||+....    ....+..    +...+..++|+|+|++++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  246 (353)
T 3vgz_A          171 GGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK----ILSRKKLLDDGKEHFFINISLDTARQRAF  246 (353)
T ss_dssp             TTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE----EEEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred             CCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe----EEEEEEcCCCCCCcccceEEECCCCCEEE
Confidence            999998888875666688999999998 8888999999999987543    3333332    455688999999999777


Q ss_pred             EEeC-CCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEE-eCCCcEEEeeCCCCCCeeeeeeecCCCCCeeE
Q 013717          314 SGAC-DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSG-SADRTVRIWQRGSDGRFGCLAVLEGHTKPVKS  391 (437)
Q Consensus       314 ~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~  391 (437)
                      +++. ++.|.+||+.+++....+.    .....-..+..++++++++ ..++.|.+||..+++   .+..+..+ ..+.+
T Consensus       247 ~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~---~~~~~~~~-~~~~~  318 (353)
T 3vgz_A          247 ITDSKAAEVLVVDTRNGNILAKVA----APESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK---VVKTFDTP-THPNS  318 (353)
T ss_dssp             EEESSSSEEEEEETTTCCEEEEEE----CSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTE---EEEEEECC-SEEEE
T ss_pred             EEeCCCCEEEEEECCCCcEEEEEE----cCCCceEEECCCCCEEEEEECCCCeEEEEECCCCe---EEEEEecC-CCCCe
Confidence            7665 4999999998876433222    2222334555566655544 478999999998866   55555543 46899


Q ss_pred             EEEEccCC
Q 013717          392 LTAVTEEG  399 (437)
Q Consensus       392 l~~~~~~~  399 (437)
                      ++|+|++.
T Consensus       319 ~~~s~dg~  326 (353)
T 3vgz_A          319 LALSADGK  326 (353)
T ss_dssp             EEECTTSC
T ss_pred             EEEcCCCC
Confidence            99999985

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=2.4e-20  Score=184.56  Aligned_cols=314  Identities=10%  Similarity=0.024  Sum_probs=198.9

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeeeec-CccC---CeEEEEee--CCEEEEEec---------C-eEEEEe
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKL---PIGCIAVH--HNFLYAASS---------H-EINVYD  123 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~---~V~~l~~~--~~~l~s~~~---------d-~v~vwd  123 (437)
                      .++.++|....+++ +.||+|.+|+...... ...+ +|..   .|.+++|+  |++|++++.         + .|.+||
T Consensus        20 ~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~-~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d   97 (723)
T 1xfd_A           20 PEAKWISDTEFIYR-EQKGTVRLWNVETNTS-TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (723)
T ss_dssp             CCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC-EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             cccEEcCCCcEEEE-eCCCCEEEEECCCCcE-EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence            35677787776655 7899999999976543 3444 6654   49999999  899999876         3 688999


Q ss_pred             CCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEe
Q 013717          124 RTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVR  201 (437)
Q Consensus       124 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (437)
                      +.+++...+..   ..+|...+..++|+|++  |+.++. +.|++||+.+++.......-..  .               
T Consensus        98 ~~~~~~~~l~~---~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~--~---------------  156 (723)
T 1xfd_A           98 IPHGDPQSLDP---PEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKE--G---------------  156 (723)
T ss_dssp             SSSCCCEECCC---TTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBT--T---------------
T ss_pred             CCCCceEeccC---CccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCC--C---------------
Confidence            99875433332   24566678999999876  776665 8999999988764332221000  0               


Q ss_pred             eccceeeecCC---------CcEEEEEeCC--CeEEEEECCC----------------------------------cEEE
Q 013717          202 RHKKKLWIEHG---------DAVTGLAVNN--GLIYSVSWDK----------------------------------SLKI  236 (437)
Q Consensus       202 ~~~~~~~~~~~---------~~v~~~~~~~--~~l~~~~~dg----------------------------------~i~i  236 (437)
                          .++.++.         ..+.+++|+|  +.|++++.|+                                  .|++
T Consensus       157 ----~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~  232 (723)
T 1xfd_A          157 ----VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHV  232 (723)
T ss_dssp             ----TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEE
T ss_pred             ----ceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEE
Confidence                0000111         1236777777  5666665442                                  7999


Q ss_pred             EECCCcceEEEeecc------cccEEEEEEecCCe-EEEEeC----CCeEEEecCCCCcccceeeEEeeC-ccccE----
Q 013717          237 WRASDLRCLESIKAH------EDAVNAVAVSAGGT-VYTGSA----DRKIRVWAKPFNEKRHALIATLEK-HKSAV----  300 (437)
Q Consensus       237 wd~~~~~~~~~~~~~------~~~v~~~~~~~~~~-l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~-~~~~i----  300 (437)
                      ||+.+++....+..+      ...+..++|+|||+ +++...    +..|.+||+.++.    ....+.. +...+    
T Consensus       233 ~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~----~~~~~~~~~~~~~~~~~  308 (723)
T 1xfd_A          233 IGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV----CTKKHEDESEAWLHRQN  308 (723)
T ss_dssp             EESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC----EEEEEEEECSSCCCCCC
T ss_pred             EECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc----ceEEEEeccCCEEeccC
Confidence            999988865666543      56799999999999 555543    3579999987543    2222222 22333    


Q ss_pred             EEEEEccCCCEEEE--EeCCC------cEEEEEC-CCCcc--ceEEeeeecccccce---EEEEeeCCEEEEEeCC---C
Q 013717          301 NALALSDDGTVLFS--GACDR------SILVWDR-EDSAN--HMVVTGALRGHGKAI---LCLINVAGLLMSGSAD---R  363 (437)
Q Consensus       301 ~~~~~~~~~~~l~~--~~~dg------~i~i~d~-~~~~~--~~~~~~~~~~~~~~i---~~~~~~~~~l~~~~~d---g  363 (437)
                      ..++|+|||+.|+.  +..++      .|++||+ ..+..  ...    +..+...+   .+++.+++.|+..+.+   +
T Consensus       309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~----l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  384 (723)
T 1xfd_A          309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQS----ITSGDWDVTKILAYDEKGNKIYFLSTEDLPR  384 (723)
T ss_dssp             CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCB----SCCSSSCEEEEEEEETTTTEEEEEESSSCTT
T ss_pred             CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeE----eecCCeEEEeeeEEcCCCCEEEEEEcCCCCc
Confidence            37899999997775  45566      5777773 33320  221    22122222   2444556677655544   7


Q ss_pred             cEEEeeCCCCCCeeeeeeecC---CCCCeeEEEEEccCCCCceEEEEEecCCC
Q 013717          364 TVRIWQRGSDGRFGCLAVLEG---HTKPVKSLTAVTEEGQNGVVSVFSGSLDG  413 (437)
Q Consensus       364 ~i~iwd~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  413 (437)
                      .++||++...... ....+..   |...+..++|+|++..    +++..+..+
T Consensus       385 ~~~l~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~spdg~~----l~~~~~~~~  432 (723)
T 1xfd_A          385 RRQLYSANTVGNF-NRQCLSCDLVENCTYFSASFSHSMDF----FLLKCEGPG  432 (723)
T ss_dssp             CCEEEEECSSTTC-CCBCSSTTSSSSCCCCEEEECTTSSE----EEEECCSSS
T ss_pred             ceEEEEEeCCCCC-CcceecccccCCCCeEEEEECCCCCE----EEEEccCCC
Confidence            8999998754311 2223333   6777999999999863    555554443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.88  E-value=7e-21  Score=187.87  Aligned_cols=282  Identities=9%  Similarity=0.058  Sum_probs=185.2

Q ss_pred             eEEEEeeCCEEEEEecCeEEEEeCCCCce--eeeeccccC-----------CCCcccEEEEEEeCCeEEEEecCCeEEEE
Q 013717          101 IGCIAVHHNFLYAASSHEINVYDRTGTTW--TSINTFNDN-----------DSSSGSVKSVTFCDGKIFTAHQDCKIRVW  167 (437)
Q Consensus       101 V~~l~~~~~~l~s~~~d~v~vwd~~~~~~--~~~~~~~~~-----------~~h~~~v~~l~~~~~~l~s~~~dg~i~iw  167 (437)
                      +..+.|.++.+++++.+.| +||+.+++.  ..+......           ..+...|.+++|+++..+..+.++.|++|
T Consensus        28 ~~~~~w~g~~~~~~~~~~i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~~~~~i~~~  106 (706)
T 2z3z_A           28 VVGLQWMGDNYVFIEGDDL-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLFTQGGLVGF  106 (706)
T ss_dssp             CTTCEEETTEEEEEETTEE-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEEETTEEEEE
T ss_pred             CCCCcCcCCeEEEEeCCcE-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEEECCEEEEE
Confidence            4446666777777776767 999998754  333221100           00125699999998773333357999999


Q ss_pred             eCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCC----
Q 013717          168 QLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASD----  241 (437)
Q Consensus       168 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~----  241 (437)
                      |+.+++.....                               .+...+.+++|+|  +.|++ ..++.|++||+.+    
T Consensus       107 d~~~~~~~~l~-------------------------------~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~  154 (706)
T 2z3z_A          107 DMLARKVTYLF-------------------------------DTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEG  154 (706)
T ss_dssp             ETTTTEEEEEE-------------------------------CCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSC
T ss_pred             ECCCCceEEcc-------------------------------CCcccccCCcCCCCCCEEEE-EECCeEEEEecCccccc
Confidence            99877543221                               2555677889998  67777 4789999999998    


Q ss_pred             -cceEEEeeccccc--------------EEEEEEecCCe-EEEEe---------------------------------CC
Q 013717          242 -LRCLESIKAHEDA--------------VNAVAVSAGGT-VYTGS---------------------------------AD  272 (437)
Q Consensus       242 -~~~~~~~~~~~~~--------------v~~~~~~~~~~-l~~~~---------------------------------~d  272 (437)
                       ++.......+...              +.+++|+|||+ |++++                                 .+
T Consensus       155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~  234 (706)
T 2z3z_A          155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH  234 (706)
T ss_dssp             CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred             CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence             7766544433332              48899999999 88776                                 44


Q ss_pred             CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC-----cEEEEECCCCccceEEeeee-cccccce
Q 013717          273 RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR-----SILVWDREDSANHMVVTGAL-RGHGKAI  346 (437)
Q Consensus       273 g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~-~~~~~~i  346 (437)
                      ..|.+||+.....  ..+.....+...+..++|+|||++|++++.++     .|++||+.+++....+.... ......+
T Consensus       235 ~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~  312 (706)
T 2z3z_A          235 VTVGIYHLATGKT--VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL  312 (706)
T ss_dssp             EEEEEEETTTTEE--EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred             eEEEEEECCCCce--EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence            7899999875431  11111124667899999999999999987775     89999998873222222111 1111112


Q ss_pred             E--EEEe--eCCEEEEEeCCCcEEEeeCC-CCCCeeeeeeecCCCCCeeE-EEEEccCCCCceEEEEEecCCC----cEE
Q 013717          347 L--CLIN--VAGLLMSGSADRTVRIWQRG-SDGRFGCLAVLEGHTKPVKS-LTAVTEEGQNGVVSVFSGSLDG----EIR  416 (437)
Q Consensus       347 ~--~~~~--~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~~~~~l~s~~~dg----~i~  416 (437)
                      .  .+.+  ++.+++++..||.++||++. .++   .+..+..|...+.. ++|+|++..    ++++++.++    .|.
T Consensus       313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~---~~~~l~~~~~~v~~~~~~spdg~~----l~~~~~~~~~~~~~l~  385 (706)
T 2z3z_A          313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR---LIRQVTKGEWEVTNFAGFDPKGTR----LYFESTEASPLERHFY  385 (706)
T ss_dssp             SCCEECTTCSSEEEEEECTTSSCEEEEEETTSC---EEEECCCSSSCEEEEEEECTTSSE----EEEEESSSCTTCBEEE
T ss_pred             CCceeecCCCCEEEEEEccCCccEEEEEECCCC---EEEecCCCCeEEEeeeEEcCCCCE----EEEEecCCCCceEEEE
Confidence            2  3444  55588999999999999886 333   56777788888887 799998863    556666665    566


Q ss_pred             EEeeccCC
Q 013717          417 AWQVSVSC  424 (437)
Q Consensus       417 iw~~~~~~  424 (437)
                      .|++.+++
T Consensus       386 ~~d~~~~~  393 (706)
T 2z3z_A          386 CIDIKGGK  393 (706)
T ss_dssp             EEETTCCC
T ss_pred             EEEcCCCC
Confidence            66665553

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.87  E-value=8.9e-20  Score=187.20  Aligned_cols=305  Identities=10%  Similarity=-0.016  Sum_probs=222.3

Q ss_pred             ceeeccccccccccCCCceeEEecCCCcceeeeec-C-----------ccCCeEEEEee---CCEEEEEecCeEEEEeCC
Q 013717           61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-G-----------HKLPIGCIAVH---HNFLYAASSHEINVYDRT  125 (437)
Q Consensus        61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~-----------h~~~V~~l~~~---~~~l~s~~~d~v~vwd~~  125 (437)
                      ...++|....++.. .++.|.+|+... .... .+ +           |...|.+++|+   |++|++++.+.|.+|+..
T Consensus       249 ~~~~SpDG~~la~~-~~~~i~~~d~~~-~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~  325 (1045)
T 1k32_A          249 PRHLNTDGRRILFS-KGGSIYIFNPDT-EKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVS  325 (1045)
T ss_dssp             EEEEEESSSCEEEE-ETTEEEEECTTT-CCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTT
T ss_pred             eeeEcCCCCEEEEE-eCCEEEEecCCc-eEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCC
Confidence            34666777766655 588899998833 2222 44 4           45578999997   678888885599999998


Q ss_pred             CCceeeeeccccCCCCcc-cEEEEEEeCCe--EEEEecCCeEE-EEeCCCCcccccccccCccccceeeecCCCCeeEEe
Q 013717          126 GTTWTSINTFNDNDSSSG-SVKSVTFCDGK--IFTAHQDCKIR-VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVR  201 (437)
Q Consensus       126 ~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~--l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (437)
                      ++....   +   ..|.. .+..++|+ +.  |+.++.++.+. +|++.+++....                        
T Consensus       326 ~~~~~~---~---~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l------------------------  374 (1045)
T 1k32_A          326 GTYVLK---V---PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF------------------------  374 (1045)
T ss_dssp             SSBEEE---C---SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC------------------------
T ss_pred             CCceEE---c---cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe------------------------
Confidence            864332   2   34666 89999999 65  88888888888 889886642211                        


Q ss_pred             eccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCC-----
Q 013717          202 RHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADR-----  273 (437)
Q Consensus       202 ~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg-----  273 (437)
                             .+|...+..++|+|  ++|++++.++.|++||+.+++....+..|...+.+++|+|||+ |++++.++     
T Consensus       375 -------~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~  447 (1045)
T 1k32_A          375 -------EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETD  447 (1045)
T ss_dssp             -------CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTC
T ss_pred             -------cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCcccccc
Confidence                   13777899999998  8899999999999999999998887778888999999999999 77776644     


Q ss_pred             -----eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCcc-------ce--------
Q 013717          274 -----KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSAN-------HM--------  333 (437)
Q Consensus       274 -----~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~--------  333 (437)
                           .|++||+....     ...+..|...+..++|+|||++|+.++.++...+|+......       ..        
T Consensus       448 ~~~~~~i~l~d~~~g~-----~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  522 (1045)
T 1k32_A          448 GYVMQAIHVYDMEGRK-----IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGS  522 (1045)
T ss_dssp             SCCEEEEEEEETTTTE-----EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTC
T ss_pred             CCCCCeEEEEECCCCc-----EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCC
Confidence                 89999987532     455667788889999999999999999888777776532211       00        


Q ss_pred             ------------------------EEeeeecccccceEEEEeeCC--EEEE-------------EeCCCcEEEeeCCCCC
Q 013717          334 ------------------------VVTGALRGHGKAILCLINVAG--LLMS-------------GSADRTVRIWQRGSDG  374 (437)
Q Consensus       334 ------------------------~~~~~~~~~~~~i~~~~~~~~--~l~~-------------~~~dg~i~iwd~~~~~  374 (437)
                                              .....+..|...+..+.++++  ++++             ......|.+||+.+++
T Consensus       523 ~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~  602 (1045)
T 1k32_A          523 PNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK  602 (1045)
T ss_dssp             CCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC
T ss_pred             CCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCc
Confidence                                    001112234556667777665  4553             1234578888988766


Q ss_pred             CeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          375 RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       375 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                          ...+.   ..+..++|+|++.     +|++++.| .|++||+.+++
T Consensus       603 ----~~~l~---~~v~~~~~S~DG~-----~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          603 ----VTEVK---NNLTDLRLSADRK-----TVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             ----EEEEE---EEEEEEEECTTSC-----EEEEEETT-SCEEEEESSCT
T ss_pred             ----EEEee---cCcceEEECCCCC-----EEEEEcCC-cEEEEeCccCc
Confidence                22222   5688999999985     67777766 89999998876

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=5e-19  Score=163.26  Aligned_cols=206  Identities=12%  Similarity=0.091  Sum_probs=145.8

Q ss_pred             cCCeEEEEee--CCEEEEEecCeEEEEeCCCCce--------eeeeccc--cCCCCcccEEEEEEeCCe--EE----EEe
Q 013717           98 KLPIGCIAVH--HNFLYAASSHEINVYDRTGTTW--------TSINTFN--DNDSSSGSVKSVTFCDGK--IF----TAH  159 (437)
Q Consensus        98 ~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~--------~~~~~~~--~~~~h~~~v~~l~~~~~~--l~----s~~  159 (437)
                      ...+..++++  +.++++++.+.+++|+......        .......  ....+...|.+++|+++.  |+    +++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred             CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence            3467888888  8889988878888887642100        0000000  001356789999999765  66    788


Q ss_pred             cCCeEEEEeCCCCcccc--cccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcE
Q 013717          160 QDCKIRVWQLTPTKHHK--LKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSL  234 (437)
Q Consensus       160 ~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i  234 (437)
                      .|+.|++||+.+.....  ....+                     .....+.+|...|.+++|+|   .+|++++.||+|
T Consensus       116 ~d~~v~iwd~~~~~~~~~~~~~~~---------------------~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v  174 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNEAKQQKRPF---------------------AYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI  174 (434)
T ss_dssp             TEEEEEEEEHHHHHCTTCSSCCCS---------------------EEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred             CCceEEEEEccccccCCcCCccee---------------------eeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence            89999999987541000  00000                     00122346899999999997   689999999999


Q ss_pred             EEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC-------ccccEEEEEEc
Q 013717          235 KIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK-------HKSAVNALALS  306 (437)
Q Consensus       235 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-------~~~~i~~~~~~  306 (437)
                      ++||++++..+.....|...|.+++|+|+|. |++|+.||.|++||++ ..    ....+..       |...+.+++|+
T Consensus       175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~----~~~~~~~~~~~~~~~~~~v~~v~w~  249 (434)
T 2oit_A          175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ----EKKVIPCPPFYESDHPVRVLDVLWI  249 (434)
T ss_dssp             EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC----EEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred             EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc----ccccccCCcccCCCCceeEEEEEEe
Confidence            9999999877766677889999999999998 9999999999999986 22    2222222       23489999999


Q ss_pred             cCCCEEEEE-eCCC------cEEEEECCCC
Q 013717          307 DDGTVLFSG-ACDR------SILVWDREDS  329 (437)
Q Consensus       307 ~~~~~l~~~-~~dg------~i~i~d~~~~  329 (437)
                      +++.++++. ..||      .+++|+++..
T Consensus       250 ~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          250 GTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             ETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             cCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            988777543 3343      3899999865

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=4.3e-20  Score=177.95  Aligned_cols=264  Identities=8%  Similarity=0.024  Sum_probs=182.2

Q ss_pred             ccCCeEEEEee--CCEEEEEec-C-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEec---CCeEEEEe
Q 013717           97 HKLPIGCIAVH--HNFLYAASS-H-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQ---DCKIRVWQ  168 (437)
Q Consensus        97 h~~~V~~l~~~--~~~l~s~~~-d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~---dg~i~iwd  168 (437)
                      +..+|.+++|+  |++||.++. + .++||++++++...+.     ..+...+..+.|+|++ +++++.   +...++|.
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt-----~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~   94 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLN-----REPINSVLDPHYGVGRVILVRDVSKGAEQHALFK   94 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECC-----SSCCSEECEECTTCSEEEEEEECSTTSCCEEEEE
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeee-----cccccccccccCCCCeEEEEeccCCCCcceEEEE
Confidence            46689999999  899999886 7 9999999775443332     1233689999999888 555554   45566665


Q ss_pred             CCC--CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceE
Q 013717          169 LTP--TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCL  245 (437)
Q Consensus       169 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~  245 (437)
                      ++.  ......+..                             .+...+.++++++ ..+++.+.++.+.+||+.+++..
T Consensus        95 ~~~~~~g~~~~l~~-----------------------------~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~  145 (582)
T 3o4h_A           95 VNTSRPGEEQRLEA-----------------------------VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR  145 (582)
T ss_dssp             EETTSTTCCEECTT-----------------------------SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE
T ss_pred             EeccCCCccccccC-----------------------------CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE
Confidence            543  211111111                             1222244556666 44555555666669999988765


Q ss_pred             EEeecccccEEEEEEecCCe-EEEEeCC----CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC-
Q 013717          246 ESIKAHEDAVNAVAVSAGGT-VYTGSAD----RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR-  319 (437)
Q Consensus       246 ~~~~~~~~~v~~~~~~~~~~-l~~~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-  319 (437)
                      ..... ..  .+++|+|||+ +++++.+    +.|.+||+.++.     ...+..+...+..++|+|||++|+++..++ 
T Consensus       146 ~l~~~-~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-----~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~  217 (582)
T 3o4h_A          146 ELARL-PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-----LRVFDSGEGSFSSASISPGMKVTAGLETARE  217 (582)
T ss_dssp             EEEEE-SS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-----CEEECCSSCEEEEEEECTTSCEEEEEECSSC
T ss_pred             EeecC-CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-----ceEeecCCCccccceECCCCCEEEEccCCCe
Confidence            55443 23  7899999999 7777776    789999987543     235667888899999999999999888888 


Q ss_pred             -cEEEEECCCCccceEEeeeecccccceEE----------EEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCC
Q 013717          320 -SILVWDREDSANHMVVTGALRGHGKAILC----------LINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKP  388 (437)
Q Consensus       320 -~i~i~d~~~~~~~~~~~~~~~~~~~~i~~----------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~  388 (437)
                       .|++||+.+++..     .+.+|...+..          +++++.++++++.||.+++|++  ++   ...   .+.+.
T Consensus       218 ~~i~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~---~~~---~~~~~  284 (582)
T 3o4h_A          218 ARLVTVDPRDGSVE-----DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GE---RVE---APQGN  284 (582)
T ss_dssp             EEEEEECTTTCCEE-----ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TE---EEC---CCSSE
T ss_pred             eEEEEEcCCCCcEE-----EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CC---eec---cCCCc
Confidence             8999999877533     23445444433          4445558899999999999999  33   332   33467


Q ss_pred             eeEEEEEccCCCCceEEEEEecCCCc---EEEEeec
Q 013717          389 VKSLTAVTEEGQNGVVSVFSGSLDGE---IRAWQVS  421 (437)
Q Consensus       389 v~~l~~~~~~~~~~~~~l~s~~~dg~---i~iw~~~  421 (437)
                      |.+++|+ ++     +++++++.+..   +.+|+..
T Consensus       285 v~~~~~s-dg-----~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          285 HGRVVLW-RG-----KLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             EEEEEEE-TT-----EEEEEEEETTEEEEEEEETTC
T ss_pred             eEEEEec-CC-----EEEEEEcCCCCCCeEEEEcCC
Confidence            8999999 65     47788777744   6666654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=4.5e-20  Score=170.22  Aligned_cols=254  Identities=11%  Similarity=0.080  Sum_probs=161.5

Q ss_pred             cccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEE
Q 013717          142 SGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA  219 (437)
Q Consensus       142 ~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  219 (437)
                      ...+..++++++.  +++++.|+ +++|+.......   .........            ...........+...|.+++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~---~~~~~~~~~------------~~~~~~~~~~~~~~~v~~l~   99 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ---NKPGDDPNK------------IVDKVQGLLVPMKFPIHHLA   99 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC---CCTTCCTTC------------EEECCCCEEECCSSCEEEEE
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh---cccccCccc------------ccccCccccccCCCcccEEE
Confidence            3457888888554  77777777 899876422100   000000000            00000011124677899999


Q ss_pred             eCC--CeEE----EEECCCcEEEEECCCc--------ce---EEEeecccccEEEEEEecC-Ce-EEEEeCCCeEEEecC
Q 013717          220 VNN--GLIY----SVSWDKSLKIWRASDL--------RC---LESIKAHEDAVNAVAVSAG-GT-VYTGSADRKIRVWAK  280 (437)
Q Consensus       220 ~~~--~~l~----~~~~dg~i~iwd~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~-l~~~~~dg~v~iwd~  280 (437)
                      |++  ++|+    +|+.|+.|++||+.++        +.   +..+.+|...|.+++|+|+ +. |++++.||.|++||+
T Consensus       100 ~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~  179 (434)
T 2oit_A          100 LSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQV  179 (434)
T ss_dssp             ECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEE
T ss_pred             EcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEc
Confidence            998  7788    6788999999998765        22   3445578999999999998 55 999999999999999


Q ss_pred             CCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeec---ccccceEEEEeeCC--E
Q 013717          281 PFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALR---GHGKAILCLINVAG--L  355 (437)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~--~  355 (437)
                      +...    ......+|...|.+++|+|+|++|++|+.||.|++||++ ++....+.....   .|...+.++.|+++  +
T Consensus       180 ~~~~----~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~  254 (434)
T 2oit_A          180 TETV----KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVF  254 (434)
T ss_dssp             SSSE----EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEE
T ss_pred             CCCc----ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceE
Confidence            7652    344556688999999999999999999999999999998 332222221111   23458899999877  3


Q ss_pred             E-EEEeCCCc------EEEeeCCCCCC--eeeeeeec-------CCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717          356 L-MSGSADRT------VRIWQRGSDGR--FGCLAVLE-------GHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       356 l-~~~~~dg~------i~iwd~~~~~~--~~~~~~~~-------~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~  419 (437)
                      + +.+..||.      +++|++...+.  ......+.       +...+-..+.+.++.+    .++++.+..+.|-+..
T Consensus       255 l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~----l~~v~s~~s~dv~vl~  330 (434)
T 2oit_A          255 AIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWD----LVLAASAASTEVSILA  330 (434)
T ss_dssp             EEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGT----EEEEEETTCSBCEEEE
T ss_pred             EEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCC----EEEEecCCCCceeEEE
Confidence            3 23444543      89999986531  11111111       2223333344445553    3555555555565555


Q ss_pred             e
Q 013717          420 V  420 (437)
Q Consensus       420 ~  420 (437)
                      .
T Consensus       331 ~  331 (434)
T 2oit_A          331 R  331 (434)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=4.9e-19  Score=158.01  Aligned_cols=268  Identities=10%  Similarity=0.083  Sum_probs=174.8

Q ss_pred             cccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEec-C-eEEEEeCCCCceeeeeccccCCCCcc
Q 013717           68 VPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASS-H-EINVYDRTGTTWTSINTFNDNDSSSG  143 (437)
Q Consensus        68 ~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~-d-~v~vwd~~~~~~~~~~~~~~~~~h~~  143 (437)
                      ...+++.+.++.|.+|+............+...+ +++|+  +++|++++. + .|.+||..+++.. ...+   ..+..
T Consensus        10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-~~~~---~~~~~   84 (331)
T 3u4y_A           10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK-VVAI---QEGQS   84 (331)
T ss_dssp             CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE-EEEE---EECSS
T ss_pred             CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee-EEec---ccCCC
Confidence            3456777889999999987654433333555556 99998  776776665 5 9999999986541 2222   23445


Q ss_pred             cEEEEEEeCCe--EEEEecCC---eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717          144 SVKSVTFCDGK--IFTAHQDC---KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL  218 (437)
Q Consensus       144 ~v~~l~~~~~~--l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  218 (437)
                      +..+++|+++.  ++++..++   .|.+||+.+++....+.                               ......++
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~-------------------------------~~~~~~~~  133 (331)
T 3u4y_A           85 SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP-------------------------------IPYDAVGI  133 (331)
T ss_dssp             CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE-------------------------------CCTTEEEE
T ss_pred             CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE-------------------------------CCCCccce
Confidence            55559999765  66444442   89999998876443322                               34456899


Q ss_pred             EeCC--CeEE-EEECCCc-EEEEECCCcceEE----EeecccccEEEEEEecCCe-EE-EEeCCCeEEEecCCCCcccce
Q 013717          219 AVNN--GLIY-SVSWDKS-LKIWRASDLRCLE----SIKAHEDAVNAVAVSAGGT-VY-TGSADRKIRVWAKPFNEKRHA  288 (437)
Q Consensus       219 ~~~~--~~l~-~~~~dg~-i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~-l~-~~~~dg~v~iwd~~~~~~~~~  288 (437)
                      +|+|  ++++ +...++. |.+|++.....+.    ...........++|+|+|+ ++ ++..++.|.+||+..... ..
T Consensus       134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~-~~  212 (331)
T 3u4y_A          134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN-IT  212 (331)
T ss_dssp             EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS-CE
T ss_pred             EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc-cc
Confidence            9998  4454 4456688 9999987643331    1113445689999999998 54 455689999999875442 11


Q ss_pred             eeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCccceE--Eeeeecccccce-----EEEEeeCCEEEEE-
Q 013717          289 LIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSANHMV--VTGALRGHGKAI-----LCLINVAGLLMSG-  359 (437)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~i-----~~~~~~~~~l~~~-  359 (437)
                      .+..+. ....+..++|+|||++++++. .++.|.+||+.+++....  +...+..+....     .++.+++.+|+++ 
T Consensus       213 ~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~  291 (331)
T 3u4y_A          213 LLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISA  291 (331)
T ss_dssp             EEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEE
T ss_pred             eeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEec
Confidence            244444 346678999999999776654 578899999987654211  111111111111     3555556666554 


Q ss_pred             eCCCcEEEeeCCCC
Q 013717          360 SADRTVRIWQRGSD  373 (437)
Q Consensus       360 ~~dg~i~iwd~~~~  373 (437)
                      ..++.|++||+...
T Consensus       292 ~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          292 NISRELKVFTISGK  305 (331)
T ss_dssp             TTTTEEEEEETTSC
T ss_pred             CCCCcEEEEEecCC
Confidence            55679999999863

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=1.5e-19  Score=158.36  Aligned_cols=249  Identities=10%  Similarity=-0.012  Sum_probs=174.7

Q ss_pred             ccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEecCeEEEEeCCC-CceeeeeccccCCCCcccEEEEE
Q 013717           73 KLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASSHEINVYDRTG-TTWTSINTFNDNDSSSGSVKSVT  149 (437)
Q Consensus        73 s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~-~~~~~~~~~~~~~~h~~~v~~l~  149 (437)
                      +.+.++.|.+|+..... ......|...|.+++|+  +++|++++.+.|.+||+.+ ++...+..    ..+...|.+++
T Consensus        17 ~~~~~~~i~~~d~~~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~----~~~~~~~~~~~   91 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRK-MRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDT----GFATICNNDHG   91 (297)
T ss_dssp             -CCCCEEEEEEETTTTE-EEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCC----TTCCCBCSCCE
T ss_pred             CCCcceeEEEEeCCCCc-eeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEecc----ccccccccceE
Confidence            34678999999987643 33344899999999999  8999998855999999988 65443332    12357889999


Q ss_pred             EeCCe--EEEEe--cCCeEEEEeC--CCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-
Q 013717          150 FCDGK--IFTAH--QDCKIRVWQL--TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-  222 (437)
Q Consensus       150 ~~~~~--l~s~~--~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  222 (437)
                      |+++.  |++++  .++...+|.+  .+++. ..+                               .+...+..++|+| 
T Consensus        92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~-------------------------------~~~~~~~~~~~spd  139 (297)
T 2ojh_A           92 ISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLM-------------------------------TKNLPSYWHGWSPD  139 (297)
T ss_dssp             ECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EEC-------------------------------CSSSSEEEEEECTT
T ss_pred             ECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEe-------------------------------ecCCCccceEECCC
Confidence            99775  77777  3345555554  44331 111                               1233488889998 


Q ss_pred             -CeEE-EEECCCcEEEEECCC-cceEEEeecccccEEEEEEecCCe-EEEEe-CCCeEEEecCCCCcccceeeEEeeCcc
Q 013717          223 -GLIY-SVSWDKSLKIWRASD-LRCLESIKAHEDAVNAVAVSAGGT-VYTGS-ADRKIRVWAKPFNEKRHALIATLEKHK  297 (437)
Q Consensus       223 -~~l~-~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~  297 (437)
                       +.++ ++..++.+++|++.. ......+..+...+.+++|+|++. +++++ .++.+++|++....   .....+..+.
T Consensus       140 g~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~  216 (297)
T 2ojh_A          140 GKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG---SSVERITDSA  216 (297)
T ss_dssp             SSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS---SCEEECCCCS
T ss_pred             CCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC---CCcEEEecCC
Confidence             5555 788899999998532 233455566778899999999998 66555 58999999875322   2345566677


Q ss_pred             ccEEEEEEccCCCEEEEEeCC-----------CcEEEEECCCCccceEEeeeecccccceEEEEeeC--CEEEEEeCCC
Q 013717          298 SAVNALALSDDGTVLFSGACD-----------RSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLLMSGSADR  363 (437)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg  363 (437)
                      ..+..++|+|+|++|++++.+           +.|++||+.+++...  .....+|...+..+.|++  ++|++++.+.
T Consensus       217 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          217 YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVET--LFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEE--EEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCcee--eeccCCCCcccccceECCCCCEEEEEEecc
Confidence            889999999999999988776           569999998765432  222345666777676664  4777666543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.86  E-value=9e-19  Score=157.44  Aligned_cols=273  Identities=13%  Similarity=0.148  Sum_probs=172.3

Q ss_pred             CCceeEEecCCCc-ceee--eecCccCCeEEEEee--CCEEEEEec---C-eEEEEeCCCCceeeeeccccCCCCcccEE
Q 013717           76 PDETINFSSASHL-CINS--VQLGHKLPIGCIAVH--HNFLYAASS---H-EINVYDRTGTTWTSINTFNDNDSSSGSVK  146 (437)
Q Consensus        76 ~dg~i~~~~~~~~-~~~~--~~~~h~~~V~~l~~~--~~~l~s~~~---d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~  146 (437)
                      .++.+.+|..+.. ....  ....+...+..++|+  |+ |++++.   + .|.+||+.++..+.+..+   ..+...+.
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~---~~~~~~p~   89 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV---VAPGTPPA   89 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE---EEESCCCS
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee---ecCCCCCE
Confidence            3556777777542 2222  223667788899999  66 554443   5 999999987765555543   34667888


Q ss_pred             EEEEeCCe--EEEEe-cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-
Q 013717          147 SVTFCDGK--IFTAH-QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-  222 (437)
Q Consensus       147 ~l~~~~~~--l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  222 (437)
                      .++|++++  |++++ .++.|.+|++........+..+......      +            ....+...+.+++++| 
T Consensus        90 ~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~------p------------~~~~~~~~~~~~~~spd  151 (347)
T 3hfq_A           90 YVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHG------P------------RPEQDGSHIHYTDLTPD  151 (347)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCC------S------------STTCSSCCEEEEEECTT
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCC------C------------CccccCCCceEEEECCC
Confidence            99999765  76666 7899999999643221111111000000      0            0001334688999998 


Q ss_pred             -CeEEEEECCCcEEEEECC-CcceEE--Eeec-ccccEEEEEEecCCe-EEE-EeCCCeEEEecCCCCcccceeeEEeeC
Q 013717          223 -GLIYSVSWDKSLKIWRAS-DLRCLE--SIKA-HEDAVNAVAVSAGGT-VYT-GSADRKIRVWAKPFNEKRHALIATLEK  295 (437)
Q Consensus       223 -~~l~~~~~dg~i~iwd~~-~~~~~~--~~~~-~~~~v~~~~~~~~~~-l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~  295 (437)
                       +++++...++.|++||+. +++...  .+.. .......++|+|+|+ +++ ...++.|.+|++.........+..+..
T Consensus       152 g~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~  231 (347)
T 3hfq_A          152 NRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT  231 (347)
T ss_dssp             SCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred             CcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee
Confidence             655555568899999998 554332  2222 233678899999998 554 567899999998642222233333332


Q ss_pred             cc------ccEEEEEEccCCCEEE-EEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeC-CCcE
Q 013717          296 HK------SAVNALALSDDGTVLF-SGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSA-DRTV  365 (437)
Q Consensus       296 ~~------~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-dg~i  365 (437)
                      ..      ..+..++|+|||++|+ +...++.|.+|++.... .......+..+...+..++++  +++|++++. ++.|
T Consensus       232 ~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g-~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v  310 (347)
T 3hfq_A          232 IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG-HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNA  310 (347)
T ss_dssp             SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG-CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEE
T ss_pred             cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC-cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcE
Confidence            22      4588999999999874 55568999999997432 222333444444555666665  447777765 4899


Q ss_pred             EEeeCC
Q 013717          366 RIWQRG  371 (437)
Q Consensus       366 ~iwd~~  371 (437)
                      .+|++.
T Consensus       311 ~v~~~d  316 (347)
T 3hfq_A          311 TLYARD  316 (347)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            999554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=2.3e-19  Score=160.41  Aligned_cols=268  Identities=9%  Similarity=0.020  Sum_probs=179.3

Q ss_pred             cccccCCCceeEEecCCCcceeeeec--CccC-CeEEEEee--CCEEE-EEecC-eEEEEeCCCCceeeeeccccCCCCc
Q 013717           70 SLQKLSPDETINFSSASHLCINSVQL--GHKL-PIGCIAVH--HNFLY-AASSH-EINVYDRTGTTWTSINTFNDNDSSS  142 (437)
Q Consensus        70 ~~~s~s~dg~i~~~~~~~~~~~~~~~--~h~~-~V~~l~~~--~~~l~-s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~  142 (437)
                      .+++.+.++.|.+|+...... ...+  ++.. .+.+++|+  +++++ ++..+ .|.+||+.+++............|.
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAV-DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEE-EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             EEEEcCCCCeEEEEECCCCcE-EEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            466778899999999976443 3344  4433 48889998  66654 55556 9999999886433322221001123


Q ss_pred             ccEEEEEEeCCe--EEEEe------------cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceee
Q 013717          143 GSVKSVTFCDGK--IFTAH------------QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLW  208 (437)
Q Consensus       143 ~~v~~l~~~~~~--l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (437)
                      ..+..++|++++  ++++.            .++.|.+||+.+++....+.                             
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-----------------------------  132 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-----------------------------  132 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-----------------------------
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe-----------------------------
Confidence            367789999765  66664            57999999998775433222                             


Q ss_pred             ecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeC-CC-----------
Q 013717          209 IEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSA-DR-----------  273 (437)
Q Consensus       209 ~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~-dg-----------  273 (437)
                        ....+.++++++  ++++++  ++.|.+||+.+++.+..+..+.. ...+.|+|++. ++..+. ++           
T Consensus       133 --~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~  207 (337)
T 1pby_B          133 --APRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARK  207 (337)
T ss_dssp             --CCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBT
T ss_pred             --CCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeecccc
Confidence              234566788887  667766  68999999999988877764331 11237888887 444332 33           


Q ss_pred             ------------eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecc
Q 013717          274 ------------KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRG  341 (437)
Q Consensus       274 ------------~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  341 (437)
                                  .|.+||+......   ...+..+...+..++|+|+|++++++  ++.|++||+.+++....+    ..
T Consensus       208 ~~~~~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~----~~  278 (337)
T 1pby_B          208 DIDPADPTAYRTGLLTMDLETGEMA---MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV----PL  278 (337)
T ss_dssp             TSCTTSGGGEEEEEEEEETTTCCEE---EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE----EC
T ss_pred             ccccccccccccceEEEeCCCCCce---EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCccee----cC
Confidence                        4689988765422   33344566778899999999999988  799999999876533222    11


Q ss_pred             cccceEEEEee--CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCC
Q 013717          342 HGKAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGH  385 (437)
Q Consensus       342 ~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h  385 (437)
                       ...+.++.++  +++|++++.++.|++||+.+++   .+..+..+
T Consensus       279 -~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~---~~~~~~~~  320 (337)
T 1pby_B          279 -PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE---KKGQVDLP  320 (337)
T ss_dssp             -SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC---EEEEEECG
T ss_pred             -CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc---EEEEEEcC
Confidence             2234455555  5588888889999999999876   45555433

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.85  E-value=7.2e-20  Score=181.17  Aligned_cols=279  Identities=6%  Similarity=-0.030  Sum_probs=183.3

Q ss_pred             CCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcc---cEEEEEEeCCe--EEEEecC---------
Q 013717           99 LPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSG---SVKSVTFCDGK--IFTAHQD---------  161 (437)
Q Consensus        99 ~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~--l~s~~~d---------  161 (437)
                      ..+.+++|+  |+++++ +.| .|++||+.+++...+..     .|..   .|.+++|+|++  |++++.+         
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~-----~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~   90 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIE-----GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYT   90 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEEC-----TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCC
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEec-----cccccccccceEEECCCCCEEEEEecCccceeecce
Confidence            346788888  777766 566 99999999865443332     3443   59999999876  7777654         


Q ss_pred             CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEEC
Q 013717          162 CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRA  239 (437)
Q Consensus       162 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~  239 (437)
                      +.|.+||+.+++.. .+...                           .+|...+..++|+|  +.|+.++. +.|++||+
T Consensus        91 ~~i~~~d~~~~~~~-~l~~~---------------------------~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~  141 (723)
T 1xfd_A           91 GYYVLSKIPHGDPQ-SLDPP---------------------------EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAH  141 (723)
T ss_dssp             SEEEEEESSSCCCE-ECCCT---------------------------TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESS
T ss_pred             eeEEEEECCCCceE-eccCC---------------------------ccccccccccEECCCCCEEEEEEC-CeEEEEEC
Confidence            78899999987642 11111                           12555578889998  68888776 79999999


Q ss_pred             CCcceEEEeecccccE------------------EEEEEecCCe-EEEEeCCC---------------------------
Q 013717          240 SDLRCLESIKAHEDAV------------------NAVAVSAGGT-VYTGSADR---------------------------  273 (437)
Q Consensus       240 ~~~~~~~~~~~~~~~v------------------~~~~~~~~~~-l~~~~~dg---------------------------  273 (437)
                      .+++.......+...+                  .+++|+|||+ |++++.++                           
T Consensus       142 ~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (723)
T 1xfd_A          142 VGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKA  221 (723)
T ss_dssp             SSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBT
T ss_pred             CCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCC
Confidence            9988766655433333                  7899999998 88776543                           


Q ss_pred             -------eEEEecCCCCcccceeeEEeeC------ccccEEEEEEccCCCEEEEEeC----CCcEEEEECCCCccceEEe
Q 013717          274 -------KIRVWAKPFNEKRHALIATLEK------HKSAVNALALSDDGTVLFSGAC----DRSILVWDREDSANHMVVT  336 (437)
Q Consensus       274 -------~v~iwd~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~  336 (437)
                             .|.+||+.....    ...+..      +...+..++|+|||++|++...    +..|++||+.+++......
T Consensus       222 G~~~~~~~l~~~d~~~~~~----~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~  297 (723)
T 1xfd_A          222 GSENPSISLHVIGLNGPTH----DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE  297 (723)
T ss_dssp             TSCCCEEEEEEEESSSSCC----CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred             CCCCCeeEEEEEECCCCce----eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE
Confidence                   789998875431    223333      2567899999999998876643    4679999998876433222


Q ss_pred             eeecccccc------eEEEEeeCCEEEE--EeCCC------cEEEeeCCCCCCeeeeeeecCCCCCeeE-EEEEccCCCC
Q 013717          337 GALRGHGKA------ILCLINVAGLLMS--GSADR------TVRIWQRGSDGRFGCLAVLEGHTKPVKS-LTAVTEEGQN  401 (437)
Q Consensus       337 ~~~~~~~~~------i~~~~~~~~~l~~--~~~dg------~i~iwd~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~  401 (437)
                      ..   +...      -..++++++.|+.  +..++      .|++||...+....+...+..+...+.. ++|+|++.. 
T Consensus       298 ~~---~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~-  373 (723)
T 1xfd_A          298 DE---SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNK-  373 (723)
T ss_dssp             EE---CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTE-
T ss_pred             ec---cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCE-
Confidence            11   2222      2344445664443  55677      5677773233310013444444445554 699999862 


Q ss_pred             ceEEEEEecCC--CcEEEEeeccC
Q 013717          402 GVVSVFSGSLD--GEIRAWQVSVS  423 (437)
Q Consensus       402 ~~~~l~s~~~d--g~i~iw~~~~~  423 (437)
                         +++++..+  +.+++|+++..
T Consensus       374 ---l~~~~~~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          374 ---IYFLSTEDLPRRRQLYSANTV  394 (723)
T ss_dssp             ---EEEEESSSCTTCCEEEEECSS
T ss_pred             ---EEEEEcCCCCcceEEEEEeCC
Confidence               34455555  88999999754

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.85  E-value=6.7e-19  Score=158.56  Aligned_cols=241  Identities=10%  Similarity=0.074  Sum_probs=171.7

Q ss_pred             CcccEEEEEEeCCe--EEEEec-------CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717          141 SSGSVKSVTFCDGK--IFTAHQ-------DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH  211 (437)
Q Consensus       141 h~~~v~~l~~~~~~--l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (437)
                      ....+..++|+++.  +++++.       ++.|.+||..+++....+.                               .
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-------------------------------~   87 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH-------------------------------N   87 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE-------------------------------E
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe-------------------------------c
Confidence            34568899999764  555553       6789999999876444332                               2


Q ss_pred             CCcEEEEEeCC--CeEE-EEECCCcEEEEECCCcceEEEeecccc---------cEEEEEEecCCe-EEEEe--CCCeEE
Q 013717          212 GDAVTGLAVNN--GLIY-SVSWDKSLKIWRASDLRCLESIKAHED---------AVNAVAVSAGGT-VYTGS--ADRKIR  276 (437)
Q Consensus       212 ~~~v~~~~~~~--~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~-l~~~~--~dg~v~  276 (437)
                      ...+..+++++  ++++ +...++.|.+||..+++.+..+..+..         .+.+++|+|++. ++++.  .++.|.
T Consensus        88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~  167 (353)
T 3vgz_A           88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIW  167 (353)
T ss_dssp             SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEE
T ss_pred             CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEE
Confidence            23456677877  5444 445579999999999998888775432         278999999998 55554  478999


Q ss_pred             EecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CC
Q 013717          277 VWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AG  354 (437)
Q Consensus       277 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~  354 (437)
                      +||+...    +....+..+...+..++|+|+|+++++++.++.|.+||+.+++..........++...+..+.++  ++
T Consensus       168 ~~d~~~~----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  243 (353)
T 3vgz_A          168 VVDGGNI----KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ  243 (353)
T ss_dssp             EEETTTT----EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT
T ss_pred             EEcCCCC----ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC
Confidence            9988654    34555554556688999999999999999999999999988764433322222344455556655  55


Q ss_pred             EEEEEe-CCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          355 LLMSGS-ADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       355 ~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      ++++++ .++.|.+||..+++   .+..+....  ...++|+|++..    ++++...++.|.+||+.+++.
T Consensus       244 ~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~~--~~~~~~s~dg~~----l~v~~~~~~~v~~~d~~~~~~  306 (353)
T 3vgz_A          244 RAFITDSKAAEVLVVDTRNGN---ILAKVAAPE--SLAVLFNPARNE----AYVTHRQAGKVSVIDAKSYKV  306 (353)
T ss_dssp             EEEEEESSSSEEEEEETTTCC---EEEEEECSS--CCCEEEETTTTE----EEEEETTTTEEEEEETTTTEE
T ss_pred             EEEEEeCCCCEEEEEECCCCc---EEEEEEcCC--CceEEECCCCCE----EEEEECCCCeEEEEECCCCeE
Confidence            555555 45999999998877   444444332  257899999863    666777899999999987653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.84  E-value=1.6e-17  Score=150.15  Aligned_cols=266  Identities=9%  Similarity=0.076  Sum_probs=169.5

Q ss_pred             eEEEEeC--CCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC----CeEEEEeCCCC-cccccccccCccccce
Q 013717          118 EINVYDR--TGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD----CKIRVWQLTPT-KHHKLKTTLPTVNDRL  188 (437)
Q Consensus       118 ~v~vwd~--~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d----g~i~iwd~~~~-~~~~~~~~~~~~~~~~  188 (437)
                      .|.+|++  .+++...+...     +...+..++|++++  |++++.+    +.|.+|+++.. .....+...       
T Consensus        28 ~i~~~~~d~~~g~~~~~~~~-----~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~-------   95 (361)
T 3scy_A           28 GIYTFRFNEETGESLPLSDA-----EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ-------   95 (361)
T ss_dssp             EEEEEEEETTTCCEEEEEEE-----ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE-------
T ss_pred             CEEEEEEeCCCCCEEEeecc-----cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe-------
Confidence            7888866  45545444442     56777889999775  7777765    79999998753 111111111       


Q ss_pred             eeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEE-CCCcEEEEECCCcceEEEe----e--c--------ccc
Q 013717          189 LRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVS-WDKSLKIWRASDLRCLESI----K--A--------HED  253 (437)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~----~--~--------~~~  253 (437)
                                          ..+......++++.+++++++ .++.|.+|++.....+..+    .  +        +..
T Consensus        96 --------------------~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~  155 (361)
T 3scy_A           96 --------------------KTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMP  155 (361)
T ss_dssp             --------------------ECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSC
T ss_pred             --------------------ccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCC
Confidence                                124456677777557677666 6889999999754332211    1  1        123


Q ss_pred             cEEEEEEecCCe-EEEEe-CCCeEEEecCCCCcc----c-cee----eEEeeCccccEEEEEEccCCCEEEEEe-CCCcE
Q 013717          254 AVNAVAVSAGGT-VYTGS-ADRKIRVWAKPFNEK----R-HAL----IATLEKHKSAVNALALSDDGTVLFSGA-CDRSI  321 (437)
Q Consensus       254 ~v~~~~~~~~~~-l~~~~-~dg~v~iwd~~~~~~----~-~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i  321 (437)
                      .+.+++|+|+|+ ++++. .++.|.+|++.....    . ...    ..........+..++|+|||+++++++ .++.|
T Consensus       156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v  235 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTV  235 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEE
T ss_pred             cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeE
Confidence            468899999998 55544 589999998865432    1 111    112223456678999999999887777 68999


Q ss_pred             EEEECCCCccceEE-eeeecccccceEEEEee--CCEEEEEeC--CCcEEEeeCCC-CCCeeeeeeecCCCCCeeEEEEE
Q 013717          322 LVWDREDSANHMVV-TGALRGHGKAILCLINV--AGLLMSGSA--DRTVRIWQRGS-DGRFGCLAVLEGHTKPVKSLTAV  395 (437)
Q Consensus       322 ~i~d~~~~~~~~~~-~~~~~~~~~~i~~~~~~--~~~l~~~~~--dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~l~~~  395 (437)
                      .+|++.+++..... ......+......+.++  +++|+++..  ++.|.+|++.. ......+..+.. ...+.+++|+
T Consensus       236 ~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~s  314 (361)
T 3scy_A          236 IAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIIT  314 (361)
T ss_dssp             EEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEEC
T ss_pred             EEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEEC
Confidence            99999865322111 11122223334566665  457766655  48999999962 223345555554 5678899999


Q ss_pred             ccCCCCceEEEEEec-CCCcEEEEeec
Q 013717          396 TEEGQNGVVSVFSGS-LDGEIRAWQVS  421 (437)
Q Consensus       396 ~~~~~~~~~~l~s~~-~dg~i~iw~~~  421 (437)
                      |++.     +|++++ .++.|.+|+++
T Consensus       315 pdg~-----~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          315 PNGK-----YLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             TTSC-----EEEEEETTTTEEEEEEEC
T ss_pred             CCCC-----EEEEEECCCCCEEEEEEE
Confidence            9985     455555 78999998765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.83  E-value=4.2e-17  Score=147.36  Aligned_cols=295  Identities=11%  Similarity=0.090  Sum_probs=179.9

Q ss_pred             CCCceeEEecCCCc-c--eeeeecCccCCeEEEEee--CCEEEEEec-----CeEEEEeCCC--CceeeeeccccCCCCc
Q 013717           75 SPDETINFSSASHL-C--INSVQLGHKLPIGCIAVH--HNFLYAASS-----HEINVYDRTG--TTWTSINTFNDNDSSS  142 (437)
Q Consensus        75 s~dg~i~~~~~~~~-~--~~~~~~~h~~~V~~l~~~--~~~l~s~~~-----d~v~vwd~~~--~~~~~~~~~~~~~~h~  142 (437)
                      +.++.|.+|..+.. .  ...... +...+..++|+  +++|++++.     +.|.+|+++.  +..+.+...   ..+.
T Consensus        24 ~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~---~~~~   99 (361)
T 3scy_A           24 GNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ---KTMG   99 (361)
T ss_dssp             SSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE---ECSS
T ss_pred             CCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe---ccCC
Confidence            34678888887432 2  222223 77888889999  888888887     2899998865  444444443   2345


Q ss_pred             ccEEEEEEeCCeEEEEe-cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717          143 GSVKSVTFCDGKIFTAH-QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN  221 (437)
Q Consensus       143 ~~v~~l~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  221 (437)
                      .....+++..+.|++++ .++.|.+|++.................                ........+...+.+++|+
T Consensus       100 ~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g----------------~~~~~~~~~~~~~~~~~~s  163 (361)
T 3scy_A          100 ADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKG----------------SGPDKERQTMPHLHCVRIT  163 (361)
T ss_dssp             SCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCC----------------CCSCTTTCSSCCEEEEEEC
T ss_pred             CCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccC----------------CCCCccccCCCcceEEEEC
Confidence            67778888333355554 688999999975443222211000000                0000001234457889999


Q ss_pred             C--CeEEEEE-CCCcEEEEECCCcc-------eE-----EE-eecccccEEEEEEecCCe-EEEEe-CCCeEEEecCCCC
Q 013717          222 N--GLIYSVS-WDKSLKIWRASDLR-------CL-----ES-IKAHEDAVNAVAVSAGGT-VYTGS-ADRKIRVWAKPFN  283 (437)
Q Consensus       222 ~--~~l~~~~-~dg~i~iwd~~~~~-------~~-----~~-~~~~~~~v~~~~~~~~~~-l~~~~-~dg~v~iwd~~~~  283 (437)
                      |  +++++++ .++.|.+|++....       ..     .. ..........++|+|+|+ ++++. .++.|.+||+..+
T Consensus       164 pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g  243 (361)
T 3scy_A          164 PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG  243 (361)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred             CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence            8  5565555 48899999887543       11     11 123455688999999998 66665 6899999998633


Q ss_pred             cccceeeEEee---CccccEEEEEEccCCCEEEEEeCC--CcEEEEECCCCccceEEeeeecccccceEEEEee--CCEE
Q 013717          284 EKRHALIATLE---KHKSAVNALALSDDGTVLFSGACD--RSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLL  356 (437)
Q Consensus       284 ~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l  356 (437)
                      .  ...+..+.   .+...+..++|+|||++|+++..+  +.|.+|++............+.. ...+..++++  +++|
T Consensus       244 ~--~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l  320 (361)
T 3scy_A          244 M--LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYL  320 (361)
T ss_dssp             E--EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEE
T ss_pred             c--eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEE
Confidence            2  12222222   233557899999999998776654  89999999632222222332322 3344555555  5577


Q ss_pred             EEEe-CCCcEEEeeCC--CCCCeeeeeee-cCCCCCeeEEEEE
Q 013717          357 MSGS-ADRTVRIWQRG--SDGRFGCLAVL-EGHTKPVKSLTAV  395 (437)
Q Consensus       357 ~~~~-~dg~i~iwd~~--~~~~~~~~~~~-~~h~~~v~~l~~~  395 (437)
                      ++++ .++.|.+|++.  +++   ..... ..+...+.||.|.
T Consensus       321 ~~~~~~~~~v~v~~~d~~~g~---~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          321 LVACRDTNVIQIFERDQATGL---LTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEEETTTTEEEEEEECTTTCC---EEECSCCEECSSEEEEEEE
T ss_pred             EEEECCCCCEEEEEEECCCCc---EeecceeeeCCCCeEEEEc
Confidence            7776 67899997654  443   22221 1244578888886

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.81  E-value=3.9e-18  Score=168.63  Aligned_cols=324  Identities=9%  Similarity=0.012  Sum_probs=199.9

Q ss_pred             ceeeccccccccccCCCceeEEecCCCcceeeeec-CccC---CeEEEEee--CCEEEEEec---------C-eEEEEeC
Q 013717           61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKL---PIGCIAVH--HNFLYAASS---------H-EINVYDR  124 (437)
Q Consensus        61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~---~V~~l~~~--~~~l~s~~~---------d-~v~vwd~  124 (437)
                      ++.+.|....+. .+.|++|.+|+..... ....+ +|..   .|.+++|+  |++|+.++.         + .|++||+
T Consensus        20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           20 FPNWISGQEYLH-QSADNNIVLYNIETGQ-SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCEESSSSEEEE-ECTTSCEEEEESSSCC-EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             ccEECCCCeEEE-EcCCCCEEEEEcCCCc-EEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            456667664333 4569999999997654 34444 4443   49999999  899998876         6 9999999


Q ss_pred             CCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEee
Q 013717          125 TGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRR  202 (437)
Q Consensus       125 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (437)
                      .+++......+      ...+..++|+|++  |+.+ .++.|++|++.+++.......  .                   
T Consensus        98 ~~g~~~~~~~l------~~~~~~~~~SPDG~~la~~-~~~~i~~~~~~~g~~~~l~~~--~-------------------  149 (719)
T 1z68_A           98 SNGEFVRGNEL------PRPIQYLCWSPVGSKLAYV-YQNNIYLKQRPGDPPFQITFN--G-------------------  149 (719)
T ss_dssp             TTTEECCSSCC------CSSBCCEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCCC--C-------------------
T ss_pred             CCCccccceec------CcccccceECCCCCEEEEE-ECCeEEEEeCCCCCcEEEecC--C-------------------
Confidence            98643111222      2468889999876  6666 488999999988764332110  0                   


Q ss_pred             ccceeeecCCCc---------EEEEEeCC--CeEEEEECCC----------------------------------cEEEE
Q 013717          203 HKKKLWIEHGDA---------VTGLAVNN--GLIYSVSWDK----------------------------------SLKIW  237 (437)
Q Consensus       203 ~~~~~~~~~~~~---------v~~~~~~~--~~l~~~~~dg----------------------------------~i~iw  237 (437)
                      ....++.++...         ..+++|+|  +.|++++.|.                                  .|++|
T Consensus       150 ~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~  229 (719)
T 1z68_A          150 RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII  229 (719)
T ss_dssp             BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred             CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence            000111223222         24788888  6787776542                                  78999


Q ss_pred             ECCCcceE--EE------eecccccEEEEEEecCCe-EEEEeCC----CeEEEec----CCCCcccceeeE-EeeCcccc
Q 013717          238 RASDLRCL--ES------IKAHEDAVNAVAVSAGGT-VYTGSAD----RKIRVWA----KPFNEKRHALIA-TLEKHKSA  299 (437)
Q Consensus       238 d~~~~~~~--~~------~~~~~~~v~~~~~~~~~~-l~~~~~d----g~v~iwd----~~~~~~~~~~~~-~~~~~~~~  299 (437)
                      |+.+++..  ..      +..+...+..++|+||++ +++....    ..|.+||    +.++... .... ....+...
T Consensus       230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~-~~~~~~~~~~~~~  308 (719)
T 1z68_A          230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP-KTQEHIEESRTGW  308 (719)
T ss_dssp             ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC-GGGEEEEECSSSC
T ss_pred             ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE-EEEecccccCCce
Confidence            99988753  11      224777899999999988 4443322    2488888    5433211 1110 01345555


Q ss_pred             EE-----EEEEccCCCEEEE--EeCCC--cEEEEECCCCccceEEeeeecccccceEEEEe-eCCEEEEEeC-----CCc
Q 013717          300 VN-----ALALSDDGTVLFS--GACDR--SILVWDREDSANHMVVTGALRGHGKAILCLIN-VAGLLMSGSA-----DRT  364 (437)
Q Consensus       300 i~-----~~~~~~~~~~l~~--~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~-----dg~  364 (437)
                      +.     .+.|+|||+.|+.  ...+|  .|++||+.+++ ..    .+..+...+..+.+ +++.|+..+.     ++.
T Consensus       309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~----~lt~~~~~v~~~~~~d~~~i~~~~~~~~~~~~~  383 (719)
T 1z68_A          309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AI----QITSGKWEAINIFRVTQDSLFYSSNEFEEYPGR  383 (719)
T ss_dssp             SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CE----ECSCSSSCEEEEEEECSSEEEEEESCGGGCTTC
T ss_pred             EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eE----ecccCceEEEEEEEEeCCEEEEEEecCCCCCce
Confidence            65     7899999996554  44555  56777776654 11    12233333433222 5555555554     488


Q ss_pred             EEEeeCCC--CC-Ceeeeee-ecCCCCCeeEEEEEccCCCCceEEEEEecCC--CcEEEEeeccCC
Q 013717          365 VRIWQRGS--DG-RFGCLAV-LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD--GEIRAWQVSVSC  424 (437)
Q Consensus       365 i~iwd~~~--~~-~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d--g~i~iw~~~~~~  424 (437)
                      .++|.+..  +. ...++.. +.+|...+..+.|+|++..    ++++++.+  ..+.+|++.+++
T Consensus       384 ~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~----l~~~~s~~~~p~~~l~d~~~g~  445 (719)
T 1z68_A          384 RNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKY----YALVCYGPGIPISTLHDGRTDQ  445 (719)
T ss_dssp             BEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSS----EEEEECCBSSCEEEEECSSSCC
T ss_pred             EEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCE----EEEEcCCCCCCeEEEEECCCCC
Confidence            99998764  21 1122211 2336678889999998864    55565554  568889887664

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.80  E-value=7.1e-18  Score=151.55  Aligned_cols=232  Identities=8%  Similarity=0.046  Sum_probs=155.4

Q ss_pred             EEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--Ce
Q 013717          149 TFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GL  224 (437)
Q Consensus       149 ~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~  224 (437)
                      ++.++.  +++++.++.|.+||+.+++....+..                             +....+..+++++  +.
T Consensus         6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-----------------------------~~~~~~~~~~~s~dg~~   56 (349)
T 1jmx_B            6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-----------------------------PDKFGPGTAMMAPDNRT   56 (349)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC-----------------------------SSCCSSCEEEECTTSSE
T ss_pred             cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec-----------------------------CCCCCCceeEECCCCCE
Confidence            445443  88889999999999998765433321                             1112466788887  44


Q ss_pred             EE-EEECCCcEEEEECCCcceEEEeecc------cccEEEEEEecCCe-EEEEeCC------------CeEEEecCCCCc
Q 013717          225 IY-SVSWDKSLKIWRASDLRCLESIKAH------EDAVNAVAVSAGGT-VYTGSAD------------RKIRVWAKPFNE  284 (437)
Q Consensus       225 l~-~~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~-l~~~~~d------------g~v~iwd~~~~~  284 (437)
                      ++ +...++.|.+||+.+++.+..+...      ...+..++|+|+|+ +++++.+            +.|.+||+.+..
T Consensus        57 ~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  136 (349)
T 1jmx_B           57 AYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL  136 (349)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred             EEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence            54 5557899999999999888777632      23378899999998 7777755            899999987532


Q ss_pred             ccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecc-----------------------
Q 013717          285 KRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRG-----------------------  341 (437)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----------------------  341 (437)
                      . ...+..+. +...+.+++|+|+|+ +++++  +.|++||+.+++....+.....+                       
T Consensus       137 ~-~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (349)
T 1jmx_B          137 E-AKPVRTFP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS  211 (349)
T ss_dssp             G-BCCSEEEE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred             c-cceeeecc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEE
Confidence            1 22233333 334688999999999 55554  34999999876533222110000                       


Q ss_pred             -----------------------------------------cccceEEEE--e-eCCEEEEEeCCCcEEEeeCCCCCCee
Q 013717          342 -----------------------------------------HGKAILCLI--N-VAGLLMSGSADRTVRIWQRGSDGRFG  377 (437)
Q Consensus       342 -----------------------------------------~~~~i~~~~--~-~~~~l~~~~~dg~i~iwd~~~~~~~~  377 (437)
                                                               +...+..+.  + ++++++++  ++.|++||+.+++   
T Consensus       212 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~---  286 (349)
T 1jmx_B          212 MLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK---  286 (349)
T ss_dssp             EEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE---
T ss_pred             eeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCe---
Confidence                                                     000122233  3 44577777  8899999999865   


Q ss_pred             eeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          378 CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       378 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      .+..+.. ...+.+++|+|++.     +|++++.++.|++||+++++.
T Consensus       287 ~~~~~~~-~~~~~~~~~s~dg~-----~l~~~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          287 LIKAANL-DHTYYCVAFDKKGD-----KLYLGGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             EEEEEEC-SSCCCEEEECSSSS-----CEEEESBSSEEEEEETTTTEE
T ss_pred             EEEEEcC-CCCccceEECCCCC-----EEEEecCCCeEEEEeccccce
Confidence            4444443 34578999999985     466678889999999987653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.79  E-value=5.7e-17  Score=146.62  Aligned_cols=274  Identities=9%  Similarity=0.062  Sum_probs=167.9

Q ss_pred             EEEEEec--C-eEEEEeC--CCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCC-CCccccccccc
Q 013717          110 FLYAASS--H-EINVYDR--TGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLT-PTKHHKLKTTL  181 (437)
Q Consensus       110 ~l~s~~~--d-~v~vwd~--~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~-~~~~~~~~~~~  181 (437)
                      +|+.|+.  + .|.+|++  .+++...+....  .+....+..++|++++  |++++.+ .|.+|++. +++...... .
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~--~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~-~   79 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTE--IPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEAS-H   79 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEE--CCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEE-E
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEc--cCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeE-e
Confidence            3455553  2 5777654  555444443321  1233467889999765  7777777 99999987 554322111 0


Q ss_pred             CccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--C--eEEEEE-------------CCCcEEEEECC-Ccc
Q 013717          182 PTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--G--LIYSVS-------------WDKSLKIWRAS-DLR  243 (437)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~--~l~~~~-------------~dg~i~iwd~~-~~~  243 (437)
                                                 ..+ +....++++|  +  +++++.             .+|.+.+|++. +++
T Consensus        80 ---------------------------~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~  131 (365)
T 1jof_A           80 ---------------------------PIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK  131 (365)
T ss_dssp             ---------------------------ECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC
T ss_pred             ---------------------------ecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc
Confidence                                       001 1123466666  3  233442             68999999997 466


Q ss_pred             eEEEee----cccccEEEEEEecCCe-EEEEe-CCCeEEEecCC-CCcccceeeEEee--CccccEEEEEEccCCCEEEE
Q 013717          244 CLESIK----AHEDAVNAVAVSAGGT-VYTGS-ADRKIRVWAKP-FNEKRHALIATLE--KHKSAVNALALSDDGTVLFS  314 (437)
Q Consensus       244 ~~~~~~----~~~~~v~~~~~~~~~~-l~~~~-~dg~v~iwd~~-~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~  314 (437)
                      ....+.    .+...+.+++|+|+|+ ++++. .++.|.+||+. .+.  ...+..+.  .+...+..++|+|||++|++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~--~~~~~~~~~~~~g~~p~~~~~spdg~~l~v  209 (365)
T 1jof_A          132 LEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE--VELVGSVDAPDPGDHPRWVAMHPTGNYLYA  209 (365)
T ss_dssp             EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC--EEEEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred             CcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCC--EEEeeeEecCCCCCCCCEeEECCCCCEEEE
Confidence            554443    2456799999999998 66655 46899999986 332  12223333  23567899999999999888


Q ss_pred             EeC-CCcEEEEECCC--Cccce--EEeeeec----cccc------ceEEEE-ee--CCEEEEEeCC-C-----cEEEeeC
Q 013717          315 GAC-DRSILVWDRED--SANHM--VVTGALR----GHGK------AILCLI-NV--AGLLMSGSAD-R-----TVRIWQR  370 (437)
Q Consensus       315 ~~~-dg~i~i~d~~~--~~~~~--~~~~~~~----~~~~------~i~~~~-~~--~~~l~~~~~d-g-----~i~iwd~  370 (437)
                      ++. ++.|.+|++..  ++...  .....+.    +|..      .+..+. ++  +++|+++..+ +     .|.+|++
T Consensus       210 ~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~  289 (365)
T 1jof_A          210 LMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL  289 (365)
T ss_dssp             EETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred             EECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence            775 78999998753  33211  1111111    2221      355666 55  4577666543 2     8999999


Q ss_pred             C-CCCCeeeee-eecCCCCCeeEEEEEc---cCCCCceEEEEEecC-CCcEEEEeeccC
Q 013717          371 G-SDGRFGCLA-VLEGHTKPVKSLTAVT---EEGQNGVVSVFSGSL-DGEIRAWQVSVS  423 (437)
Q Consensus       371 ~-~~~~~~~~~-~~~~h~~~v~~l~~~~---~~~~~~~~~l~s~~~-dg~i~iw~~~~~  423 (437)
                      . +++ ...+. ....+...+..++|+|   ++.     +|++++. ++.|++|+++..
T Consensus       290 ~~~g~-~~~~~~~~~~~~~~~~~~a~sp~~~dg~-----~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          290 RDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWSDE-----WMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CTTSC-EEEEEEEEECSSCCTTCCCEEECTTCTT-----EEEEECSSSCEEEEEEEETT
T ss_pred             CCCCC-EEEeeeeeecCCCCcccceecCCCcCCC-----EEEEEEcCCCeEEEEEEchh
Confidence            6 333 22211 2334555678899999   564     6777765 589999998765

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.79  E-value=1e-16  Score=146.25  Aligned_cols=284  Identities=8%  Similarity=0.024  Sum_probs=180.5

Q ss_pred             ceeeeec-CccCCeEE-----EEee--CCEEEEEec-C---eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--
Q 013717           89 CINSVQL-GHKLPIGC-----IAVH--HNFLYAASS-H---EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--  154 (437)
Q Consensus        89 ~~~~~~~-~h~~~V~~-----l~~~--~~~l~s~~~-d---~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--  154 (437)
                      ......+ .|......     .+|+  |++|+.++. +   .|.+||+.+++...+.     .++...+..+.|+|+.  
T Consensus        20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-----~~~~~~~~~~~~spdg~~   94 (388)
T 3pe7_A           20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-----EGRGDNTFGGFLSPDDDA   94 (388)
T ss_dssp             CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-----CSSCBCSSSCEECTTSSE
T ss_pred             CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-----eCCCCCccceEEcCCCCE
Confidence            3444455 66666665     7788  888888886 4   4888999886544333     2355555567899776  


Q ss_pred             EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEE--eCC--CeEEE---
Q 013717          155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA--VNN--GLIYS---  227 (437)
Q Consensus       155 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~--~~l~~---  227 (437)
                      |+.++.++.|++||+.+++......                              .+...+....  +++  ..++.   
T Consensus        95 l~~~~~~~~l~~~d~~~g~~~~~~~------------------------------~~~~~~~~~~~~~~~dg~~l~~~~~  144 (388)
T 3pe7_A           95 LFYVKDGRNLMRVDLATLEENVVYQ------------------------------VPAEWVGYGTWVANSDCTKLVGIEI  144 (388)
T ss_dssp             EEEEETTTEEEEEETTTCCEEEEEE------------------------------CCTTEEEEEEEEECTTSSEEEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcceeeee------------------------------chhhcccccceeECCCCCeeccccc
Confidence            8888889999999999876433222                              1222222222  233  33332   


Q ss_pred             -------------------EECCCcEEEEECCCcceEEEeecccccEEEEEEec-CCe-EEEEeCC------CeEEEecC
Q 013717          228 -------------------VSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA-GGT-VYTGSAD------RKIRVWAK  280 (437)
Q Consensus       228 -------------------~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~d------g~v~iwd~  280 (437)
                                         ...++.|.+||+.+++... +..+...+..++|+| +|+ |+....+      ..|.++|+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~  223 (388)
T 3pe7_A          145 RREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE  223 (388)
T ss_dssp             EGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET
T ss_pred             cCcccccccccchhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC
Confidence                               2244789999999886544 444667799999999 998 7666653      36777776


Q ss_pred             CCCcccceeeEEeeCcc--ccEEEEEEccCCCEEEEEeC-CC----cEEEEECCCCccceEEeeeecccc-----cceEE
Q 013717          281 PFNEKRHALIATLEKHK--SAVNALALSDDGTVLFSGAC-DR----SILVWDREDSANHMVVTGALRGHG-----KAILC  348 (437)
Q Consensus       281 ~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~-----~~i~~  348 (437)
                      ....     ...+..+.  ..+..++|+|||+.|+..+. ++    .|++||+.+++....  ....++.     ..-..
T Consensus       224 ~~~~-----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l--~~~~~~~~~~~~~~~~~  296 (388)
T 3pe7_A          224 DGTN-----MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQL--TSMPACSHLMSNYDGSL  296 (388)
T ss_dssp             TSCC-----CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEE--EEECCEEEEEECTTSSE
T ss_pred             CCCc-----eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEE--EcCCCceeeeecCCCCe
Confidence            5332     22233333  35778999999997765443 22    399999988754322  1222211     01125


Q ss_pred             EEeeCCEEEEE---------eCCCcEEEeeCCCCCCeeeeeeecCCCC-----------CeeEEEEEccCCCCceEEEEE
Q 013717          349 LINVAGLLMSG---------SADRTVRIWQRGSDGRFGCLAVLEGHTK-----------PVKSLTAVTEEGQNGVVSVFS  408 (437)
Q Consensus       349 ~~~~~~~l~~~---------~~dg~i~iwd~~~~~~~~~~~~~~~h~~-----------~v~~l~~~~~~~~~~~~~l~s  408 (437)
                      +++++..|+..         ..+..|++||+.+++    +..+..|..           .+..++|+|++..    ++++
T Consensus       297 ~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~----l~~~  368 (388)
T 3pe7_A          297 MVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT----QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQ----ILFT  368 (388)
T ss_dssp             EEEEECCC------------CCCCEEEEEETTTTE----EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSE----EEEE
T ss_pred             EccCCCcceeEeeeccccccCCCCEEEEEeccCCc----eEEeccccCcccccccccccCCCCccCCCCCCE----EEEE
Confidence            67777755543         456689999998754    344444554           5788999999863    5666


Q ss_pred             ecCCCcEEEEeeccC
Q 013717          409 GSLDGEIRAWQVSVS  423 (437)
Q Consensus       409 ~~~dg~i~iw~~~~~  423 (437)
                      +..+|...||.++-.
T Consensus       369 s~~~g~~~l~~~~l~  383 (388)
T 3pe7_A          369 SDVHGKPALYLATLP  383 (388)
T ss_dssp             ECTTSSCEEEEEECC
T ss_pred             ecCCCceeEEEEECC
Confidence            667888888887654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.78  E-value=1.5e-16  Score=142.82  Aligned_cols=273  Identities=9%  Similarity=0.011  Sum_probs=169.5

Q ss_pred             eeccccccccccCCCceeEEecCCCcceeeeec--CccCCeEEEEee--CCEEE-EEecC-eEEEEeCCCCceeeeeccc
Q 013717           63 QTLPSVPSLQKLSPDETINFSSASHLCINSVQL--GHKLPIGCIAVH--HNFLY-AASSH-EINVYDRTGTTWTSINTFN  136 (437)
Q Consensus        63 ~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~--~h~~~V~~l~~~--~~~l~-s~~~d-~v~vwd~~~~~~~~~~~~~  136 (437)
                      .+.+....+++.+.++.|.+|+..... ....+  +....+..++|+  +++++ ++..+ .|.+||+.+++....... 
T Consensus         6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~-   83 (349)
T 1jmx_B            6 ALKAGHEYMIVTNYPNNLHVVDVASDT-VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL-   83 (349)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTE-EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES-
T ss_pred             cccCCCEEEEEeCCCCeEEEEECCCCc-EEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc-
Confidence            445566778888899999999987643 44444  333367889998  66655 44456 999999998643322222 


Q ss_pred             cCCCC-----cccEEEEEEeCCe--EEEEecC------------CeEEEEeCCCCcccccccccCccccceeeecCCCCe
Q 013717          137 DNDSS-----SGSVKSVTFCDGK--IFTAHQD------------CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSY  197 (437)
Q Consensus       137 ~~~~h-----~~~v~~l~~~~~~--l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (437)
                         .+     ...+..++|++++  +++++.+            +.|.+||+.+++........                
T Consensus        84 ---~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----------------  144 (349)
T 1jmx_B           84 ---SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF----------------  144 (349)
T ss_dssp             ---CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE----------------
T ss_pred             ---ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec----------------
Confidence               12     3447889999765  7777654            89999999876533322211                


Q ss_pred             eEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeecccc-----------------------
Q 013717          198 VTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHED-----------------------  253 (437)
Q Consensus       198 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------------  253 (437)
                                  .+...+.+++|++ ..+++++  +.|.+||+.+++.+..+.....                       
T Consensus       145 ------------~~~~~~~~~~~s~dg~l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (349)
T 1jmx_B          145 ------------PMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEF  210 (349)
T ss_dssp             ------------ECCSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEE
T ss_pred             ------------cCCCcccceeECCCCcEEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeE
Confidence                        1334578888988 3366654  4499999999988877653210                       


Q ss_pred             -cEEEEEEecCCe-E-EEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEcc-CCCEEEEEeCCCcEEEEECCCC
Q 013717          254 -AVNAVAVSAGGT-V-YTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD-DGTVLFSGACDRSILVWDREDS  329 (437)
Q Consensus       254 -~v~~~~~~~~~~-l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~  329 (437)
                       ....+++++++. . ........+..+|...+..   ....+..+...+..++|+| +|++++++  ++.|++||+.++
T Consensus       211 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~  285 (349)
T 1jmx_B          211 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT---HTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR  285 (349)
T ss_dssp             EEEEEEEEC-------CCCEEEEEEEEEETTTCCE---EEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT
T ss_pred             EeeeeeeecCCCcCCccccccceeEEEEeccCCcE---EecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC
Confidence             234566665442 0 0000011112233332211   1112223556788999999 99999988  889999999876


Q ss_pred             ccceEEeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCCCCCCeeeeeeec
Q 013717          330 ANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFGCLAVLE  383 (437)
Q Consensus       330 ~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  383 (437)
                      +....+.   .++  .+.+++++  +++|++++.++.|++||..+++   .+..+.
T Consensus       286 ~~~~~~~---~~~--~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~---~~~~~~  333 (349)
T 1jmx_B          286 KLIKAAN---LDH--TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE---KVKNIK  333 (349)
T ss_dssp             EEEEEEE---CSS--CCCEEEECSSSSCEEEESBSSEEEEEETTTTE---EEEEEE
T ss_pred             eEEEEEc---CCC--CccceEECCCCCEEEEecCCCeEEEEeccccc---eeeeee
Confidence            5332221   122  23455554  5577778889999999998865   455444

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.78  E-value=1e-17  Score=161.36  Aligned_cols=227  Identities=10%  Similarity=0.058  Sum_probs=159.4

Q ss_pred             CcccEEEEEEeCCe--EEEEec-CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEE
Q 013717          141 SSGSVKSVTFCDGK--IFTAHQ-DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTG  217 (437)
Q Consensus       141 h~~~v~~l~~~~~~--l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  217 (437)
                      +..+|.+++|++|+  |++++. ||+++||++++++......                              .+...+..
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~------------------------------~~~~~~~~   69 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNR------------------------------EPINSVLD   69 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCS------------------------------SCCSEECE
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeec------------------------------cccccccc
Confidence            45689999999764  887776 9999999986654322211                              13357889


Q ss_pred             EEeCC-CeEEEEEC---CCcEEEEECCC---cceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccce
Q 013717          218 LAVNN-GLIYSVSW---DKSLKIWRASD---LRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHA  288 (437)
Q Consensus       218 ~~~~~-~~l~~~~~---dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~  288 (437)
                      +.|+| +.+++++.   +...++|.+..   +... .+.. ...+...+|+|+++  +++...++.+.+||+.++.    
T Consensus        70 ~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~----  143 (582)
T 3o4h_A           70 PHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG----  143 (582)
T ss_dssp             ECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE----
T ss_pred             ccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc----
Confidence            99998 55565654   45556655432   2222 3332 22344668888875  4444455556699886542    


Q ss_pred             eeEEeeCccccEEEEEEccCCCEEEEEeCC----CcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCC
Q 013717          289 LIATLEKHKSAVNALALSDDGTVLFSGACD----RSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSAD  362 (437)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~d  362 (437)
                      ... +..+..  .+++|+|||++|++++.+    +.|++||+.+++..     .+..|...+..+.|+++  +|+++..+
T Consensus       144 ~~~-l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-----~l~~~~~~~~~~~~SpDG~~l~~~~~~  215 (582)
T 3o4h_A          144 LRE-LARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-----VFDSGEGSFSSASISPGMKVTAGLETA  215 (582)
T ss_dssp             EEE-EEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-----EECCSSCEEEEEEECTTSCEEEEEECS
T ss_pred             EEE-eecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-----EeecCCCccccceECCCCCEEEEccCC
Confidence            222 222222  789999999999988877    78999999877532     23556677777777655  88888888


Q ss_pred             C--cEEEeeCCCCCCeeeeeeecCCCCCeeEEE--------EEccCCCCceEEEEEecCCCcEEEEee
Q 013717          363 R--TVRIWQRGSDGRFGCLAVLEGHTKPVKSLT--------AVTEEGQNGVVSVFSGSLDGEIRAWQV  420 (437)
Q Consensus       363 g--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~--------~~~~~~~~~~~~l~s~~~dg~i~iw~~  420 (437)
                      +  .|++||+.+++   .. .+.+|...+..++        |+|++ .    ++++++.||.+++|++
T Consensus       216 ~~~~i~~~d~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~----~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          216 REARLVTVDPRDGS---VE-DLELPSKDFSSYRPTAITWLGYLPDG-R----LAVVARREGRSAVFID  274 (582)
T ss_dssp             SCEEEEEECTTTCC---EE-ECCCSCSHHHHHCCSEEEEEEECTTS-C----EEEEEEETTEEEEEET
T ss_pred             CeeEEEEEcCCCCc---EE-EccCCCcChhhhhhccccceeEcCCC-c----EEEEEEcCCcEEEEEE
Confidence            8  89999999876   34 6777888888778        99998 3    8999999999999999

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.77  E-value=2.2e-17  Score=163.17  Aligned_cols=273  Identities=8%  Similarity=0.046  Sum_probs=174.5

Q ss_pred             EEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcc---cEEEEEEeCCe--EEEEec---------CCeEE
Q 013717          103 CIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSG---SVKSVTFCDGK--IFTAHQ---------DCKIR  165 (437)
Q Consensus       103 ~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~--l~s~~~---------dg~i~  165 (437)
                      +++|+  +++++++ .+ .|++||+.+++...+..     .|..   .+.+++|+|++  |++++.         ++.|+
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~   93 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILS-----NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY   93 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEEC-----HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEc-----cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence            56777  6555544 56 99999999975544332     2333   48999999876  776665         78999


Q ss_pred             EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc
Q 013717          166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR  243 (437)
Q Consensus       166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~  243 (437)
                      +||+.+++......                               ....+..++|+|  +.|+.+. ++.|++||+.+++
T Consensus        94 ~~d~~~g~~~~~~~-------------------------------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~  141 (719)
T 1z68_A           94 IYDLSNGEFVRGNE-------------------------------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDP  141 (719)
T ss_dssp             EEETTTTEECCSSC-------------------------------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSC
T ss_pred             EEECCCCcccccee-------------------------------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCC
Confidence            99999886421011                               123577889999  6777775 7899999999887


Q ss_pred             eEEEee-cccccE-----------------EEEEEecCCe-EEEEeCCC-------------------------------
Q 013717          244 CLESIK-AHEDAV-----------------NAVAVSAGGT-VYTGSADR-------------------------------  273 (437)
Q Consensus       244 ~~~~~~-~~~~~v-----------------~~~~~~~~~~-l~~~~~dg-------------------------------  273 (437)
                      ...... ++...|                 .+++|+|||+ |++++.|.                               
T Consensus       142 ~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~  221 (719)
T 1z68_A          142 PFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKN  221 (719)
T ss_dssp             CEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCC
T ss_pred             cEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCC
Confidence            654332 222222                 4899999998 88877552                               


Q ss_pred             ---eEEEecCCCCccc--ceee--EEeeCccccEEEEEEccCCCEEEEEeCC----CcEEEEE----CCCCccceEEeee
Q 013717          274 ---KIRVWAKPFNEKR--HALI--ATLEKHKSAVNALALSDDGTVLFSGACD----RSILVWD----REDSANHMVVTGA  338 (437)
Q Consensus       274 ---~v~iwd~~~~~~~--~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~~~  338 (437)
                         .|++||+......  ....  ..+..+...+..++|+||++++++....    ..|.+||    +.+++........
T Consensus       222 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~  301 (719)
T 1z68_A          222 PVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHI  301 (719)
T ss_dssp             CEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEE
T ss_pred             CeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecc
Confidence               7889988754321  0000  1233577789999999998777764432    3488899    7665433221100


Q ss_pred             ecccccceE-----E--EEeeCCEEE--EEeCCC--cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEE
Q 013717          339 LRGHGKAIL-----C--LINVAGLLM--SGSADR--TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVF  407 (437)
Q Consensus       339 ~~~~~~~i~-----~--~~~~~~~l~--~~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~  407 (437)
                      ..+|...+.     .  ++++++.|+  +...+|  .|.+||+.+++    ...+..+...+..+.+. ++.    .+++
T Consensus       302 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~----~~~lt~~~~~v~~~~~~-d~~----~i~~  372 (719)
T 1z68_A          302 EESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN----AIQITSGKWEAINIFRV-TQD----SLFY  372 (719)
T ss_dssp             EECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT----CEECSCSSSCEEEEEEE-CSS----EEEE
T ss_pred             cccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc----eEecccCceEEEEEEEE-eCC----EEEE
Confidence            023444433     3  444555333  454555  56777776644    34555666678888887 554    3555


Q ss_pred             EecC----CCcEEEEeecc
Q 013717          408 SGSL----DGEIRAWQVSV  422 (437)
Q Consensus       408 s~~~----dg~i~iw~~~~  422 (437)
                      ++..    ++.+++|.+..
T Consensus       373 ~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          373 SSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             EESCGGGCTTCBEEEEEEC
T ss_pred             EEecCCCCCceEEEEEEeC
Confidence            5554    58899999875

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.74  E-value=4e-15  Score=134.42  Aligned_cols=247  Identities=11%  Similarity=0.089  Sum_probs=156.0

Q ss_pred             CccCCeEEEEee--CCEEEEEecCeEEEEeCC-CCceeeeeccccCCCCcccEEEEEEeCCe----EEEEe---------
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSHEINVYDRT-GTTWTSINTFNDNDSSSGSVKSVTFCDGK----IFTAH---------  159 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----l~s~~---------  159 (437)
                      ++...+..++|+  +++|++++.+.|.+|++. +++.......   ..+ +.+.+++|++++    ++++.         
T Consensus        37 ~~~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~---~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~  112 (365)
T 1jof_A           37 PQDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASH---PIG-GHPRANDADTNTRAIFLLAAKQPPYAVYAN  112 (365)
T ss_dssp             CTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEE---ECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred             CCCCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEe---ecC-CCCccEEECCCCCEEEEEEecCCcceeccc
Confidence            344578899998  888988887899999997 6544332221   111 224457888654    23442         


Q ss_pred             ----cCCeEEEEeCCC-CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC-C
Q 013717          160 ----QDCKIRVWQLTP-TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW-D  231 (437)
Q Consensus       160 ----~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-d  231 (437)
                          .+|.+.+|++.. ++....+....                          ..+...+.+++|+|  ++++++.. +
T Consensus       113 ~~~~~~g~v~v~~~~~~g~~~~~~~~~~--------------------------~~~~~~~~~~~~spdG~~l~~~~~~~  166 (365)
T 1jof_A          113 PFYKFAGYGNVFSVSETGKLEKNVQNYE--------------------------YQENTGIHGMVFDPTETYLYSADLTA  166 (365)
T ss_dssp             EESSSCCEEEEEEECTTCCEEEEEEEEE--------------------------CCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             eeecCCceEEEEccCCCCcCcceEeeEE--------------------------eCCCCcceEEEECCCCCEEEEEcCCC
Confidence                689999999974 43221111000                          02456789999998  56777654 6


Q ss_pred             CcEEEEECC-CcceE--EEee--cccccEEEEEEecCCe-EEEEe-CCCeEEEecCCCCcccce----eeEEee----Cc
Q 013717          232 KSLKIWRAS-DLRCL--ESIK--AHEDAVNAVAVSAGGT-VYTGS-ADRKIRVWAKPFNEKRHA----LIATLE----KH  296 (437)
Q Consensus       232 g~i~iwd~~-~~~~~--~~~~--~~~~~v~~~~~~~~~~-l~~~~-~dg~v~iwd~~~~~~~~~----~~~~~~----~~  296 (437)
                      +.|++||+. +++..  ..+.  .+...+..++|+|+|+ ++++. .++.|.+|+++.......    .+..+.    ++
T Consensus       167 ~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~  246 (365)
T 1jof_A          167 NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDR  246 (365)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCB
T ss_pred             CEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCc
Confidence            899999998 67653  2333  2356799999999998 66665 478999998753221111    111121    11


Q ss_pred             cc------cEEEEE-EccCCCEEEEEeCCC------cEEEEECC-CCccceEEeeeecccc--cceEEEEe---eCCEEE
Q 013717          297 KS------AVNALA-LSDDGTVLFSGACDR------SILVWDRE-DSANHMVVTGALRGHG--KAILCLIN---VAGLLM  357 (437)
Q Consensus       297 ~~------~i~~~~-~~~~~~~l~~~~~dg------~i~i~d~~-~~~~~~~~~~~~~~~~--~~i~~~~~---~~~~l~  357 (437)
                      ..      .+..++ |+|||++|+++..+.      .|.+|++. +++ ..........+.  ..-.++++   ++++|+
T Consensus       247 ~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~-~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~  325 (365)
T 1jof_A          247 DPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMA  325 (365)
T ss_dssp             CTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC-EEEEEEEEECSSCCTTCCCEEECTTCTTEEE
T ss_pred             ccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC-EEEeeeeeecCCCCcccceecCCCcCCCEEE
Confidence            22      588999 999999988776533      89999996 333 221111121122  22345566   577888


Q ss_pred             EEeCC-CcEEEeeCCCC
Q 013717          358 SGSAD-RTVRIWQRGSD  373 (437)
Q Consensus       358 ~~~~d-g~i~iwd~~~~  373 (437)
                      +++.+ +.|++|++...
T Consensus       326 v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          326 ITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EECSSSCEEEEEEEETT
T ss_pred             EEEcCCCeEEEEEEchh
Confidence            88764 89999998764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.73  E-value=4.8e-14  Score=122.81  Aligned_cols=244  Identities=11%  Similarity=0.137  Sum_probs=163.1

Q ss_pred             CCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717          139 DSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT  216 (437)
Q Consensus       139 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  216 (437)
                      .++-..+.+++++++.  +++...++.|.+||.+ ++....+.....                        -.++...+.
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~------------------------~~~~~~~p~   80 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGK------------------------RDSQLLYPN   80 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSS------------------------STTCBSSEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCC------------------------CcccccCce
Confidence            3566789999999655  5565788999999987 332222110000                        012445688


Q ss_pred             EEEe-CC-CeEEEEEC--CCcEEEEECCCcceEEEee-cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceee
Q 013717          217 GLAV-NN-GLIYSVSW--DKSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALI  290 (437)
Q Consensus       217 ~~~~-~~-~~l~~~~~--dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~  290 (437)
                      ++++ .+ ..++++..  ++.|.+|| .+++.+..+. .+...+..+++++++. +++...++.|.+||...     ..+
T Consensus        81 ~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-----~~~  154 (286)
T 1q7f_A           81 RVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-----NVL  154 (286)
T ss_dssp             EEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-----CEE
T ss_pred             EEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-----CEE
Confidence            9999 34 56666653  89999999 5677776664 2345789999999999 55556789999998642     233


Q ss_pred             EEee--CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC--CEEEEEeCCC-cE
Q 013717          291 ATLE--KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLLMSGSADR-TV  365 (437)
Q Consensus       291 ~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg-~i  365 (437)
                      ..+.  .+...+..++++++|+++++...++.|++||... +....+  ...++...+..+++++  +++++...++ .|
T Consensus       155 ~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~--~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i  231 (286)
T 1q7f_A          155 HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLRQI--GGEGITNYPIGVGINSNGEILIADNHNNFNL  231 (286)
T ss_dssp             EEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEEEE--SCTTTSCSEEEEEECTTCCEEEEECSSSCEE
T ss_pred             EEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-CEEEEE--ccCCccCCCcEEEECCCCCEEEEeCCCCEEE
Confidence            3333  3445689999999999888877899999999753 211111  1122234566676654  4667666675 99


Q ss_pred             EEeeCCCCCCeeeeeeecCCC--CCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCC
Q 013717          366 RIWQRGSDGRFGCLAVLEGHT--KPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPN  426 (437)
Q Consensus       366 ~iwd~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  426 (437)
                      ++||.. ++   .+..+..+.  ..+.++++.|++     +++++ +.|++|++|++....|.
T Consensus       232 ~~~~~~-g~---~~~~~~~~~~~~~~~~i~~~~~g-----~l~vs-~~~~~v~v~~~~~~~pv  284 (286)
T 1q7f_A          232 TIFTQD-GQ---LISALESKVKHAQCFDVALMDDG-----SVVLA-SKDYRLYIYRYVQLAPV  284 (286)
T ss_dssp             EEECTT-SC---EEEEEEESSCCSCEEEEEEETTT-----EEEEE-ETTTEEEEEECSCCCCT
T ss_pred             EEECCC-CC---EEEEEcccCCCCcceeEEECCCC-----cEEEE-CCCCeEEEEEccccccc
Confidence            999965 33   344444333  347899999987     35666 57999999998766554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.72  E-value=3.2e-15  Score=147.87  Aligned_cols=338  Identities=9%  Similarity=-0.003  Sum_probs=188.2

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCe-----EEEEee--CCEEEEEecC----------eEEE
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPI-----GCIAVH--HNFLYAASSH----------EINV  121 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V-----~~l~~~--~~~l~s~~~d----------~v~v  121 (437)
                      .++.+.|....+++.  |++|.+|+...... ...+ +|....     ..++|+  |++|+.++.+          .+.+
T Consensus        20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~   96 (740)
T 4a5s_A           20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNS-SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (740)
T ss_dssp             CCEEECSSSEEEEEE--TTEEEEEETTTCCE-EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             cccEECCCCcEEEEc--CCcEEEEECCCCce-EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence            356788888777764  99999999976544 3445 665432     336677  8999998874          4569


Q ss_pred             EeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCcccc-------------
Q 013717          122 YDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVND-------------  186 (437)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------------  186 (437)
                      ||+.+++...   +   ..|...+...+|+|++  |+.+ .|+.|.+|++.+++..+...  .+...             
T Consensus        97 ~d~~~~~~~~---l---~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~--~g~~~~~~~g~~~~v~~e  167 (740)
T 4a5s_A           97 YDLNKRQLIT---E---ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITW--TGKEDIIYNGITDWVYEE  167 (740)
T ss_dssp             EETTTTEECC---S---SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCS--CCBTTTEEESBCCHHHHH
T ss_pred             EECCCCcEEE---c---ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcC--CCCccceecCcccccccc
Confidence            9999975433   2   3467789999999876  6665 57899999998876433221  11000             


Q ss_pred             ------ceeeecCCCCeeEEeecc---ceeee--------cCCCcEEEEEeCCCeEEEEE--CCCcEEEEECCC---cc-
Q 013717          187 ------RLLRFMLPNSYVTVRRHK---KKLWI--------EHGDAVTGLAVNNGLIYSVS--WDKSLKIWRASD---LR-  243 (437)
Q Consensus       187 ------~~~~~~~~~~~~~~~~~~---~~~~~--------~~~~~v~~~~~~~~~l~~~~--~dg~i~iwd~~~---~~-  243 (437)
                            ....+......+......   ...+.        .+...+..+.+..    .|.  ....|++||+.+   ++ 
T Consensus       168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~----~G~~~~~~~l~v~d~~~~~~~~~  243 (740)
T 4a5s_A          168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPK----AGAVNPTVKFFVVNTDSLSSVTN  243 (740)
T ss_dssp             HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCB----TTSCCCEEEEEEEETTSCCSSSC
T ss_pred             hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCC----CcCcCCeeEEEEEECCCCCCCCc
Confidence                  001122222223222110   00000        0112222222221    001  112688999998   73 


Q ss_pred             -eEEEee------cccccEEEEEEecCCe-EEEEeC----CCeEEEecCCCCcccc--eeeEEe--eCccccEE-----E
Q 013717          244 -CLESIK------AHEDAVNAVAVSAGGT-VYTGSA----DRKIRVWAKPFNEKRH--ALIATL--EKHKSAVN-----A  302 (437)
Q Consensus       244 -~~~~~~------~~~~~v~~~~~~~~~~-l~~~~~----dg~v~iwd~~~~~~~~--~~~~~~--~~~~~~i~-----~  302 (437)
                       ....+.      ++...+..++|+|||+ ++....    +..|.+||+.++....  .....+  ..+...+.     .
T Consensus       244 ~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~  323 (740)
T 4a5s_A          244 ATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSE  323 (740)
T ss_dssp             CCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCC
T ss_pred             ceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCC
Confidence             223333      2677899999999999 554432    3479999987654100  001111  33444433     6


Q ss_pred             EEEccCCCEEE-EEeC-C--CcEEEEECCCCccceEEeeeecccccceEE-EEeeCCEEE-EEeC----CCcEEEeeCCC
Q 013717          303 LALSDDGTVLF-SGAC-D--RSILVWDREDSANHMVVTGALRGHGKAILC-LINVAGLLM-SGSA----DRTVRIWQRGS  372 (437)
Q Consensus       303 ~~~~~~~~~l~-~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~l~-~~~~----dg~i~iwd~~~  372 (437)
                      ..|+|||+.|+ ..+. +  ..|++||+.++....     +......+.. +.++++.|+ ++..    .+...||.+..
T Consensus       324 p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-----lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~  398 (740)
T 4a5s_A          324 PHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-----ITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL  398 (740)
T ss_dssp             CEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-----SCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEET
T ss_pred             ceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-----cccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEEC
Confidence            88999999876 5553 3  468888887654221     1222333333 336666444 4443    24455554432


Q ss_pred             CCCeeeeeeec----CCCCCeeEEEEEccCCCCceEEEEEecCC--CcEEEEeeccC
Q 013717          373 DGRFGCLAVLE----GHTKPVKSLTAVTEEGQNGVVSVFSGSLD--GEIRAWQVSVS  423 (437)
Q Consensus       373 ~~~~~~~~~~~----~h~~~v~~l~~~~~~~~~~~~~l~s~~~d--g~i~iw~~~~~  423 (437)
                      ... .....+.    +....+....|+|++..    ++++.+..  ..+.+++...+
T Consensus       399 ~g~-~~~~~lt~~~~~~~~~~~~~~~S~dg~~----~~~~~s~~~~p~~~l~~~~~~  450 (740)
T 4a5s_A          399 IDY-TKVTCLSCELNPERCQYYSVSFSKEAKY----YQLRCSGPGLPLYTLHSSVND  450 (740)
T ss_dssp             TEE-EEEEESSTTTSTTTBCBEEEEECTTSSE----EEEEECSBSSCEEEEEETTTT
T ss_pred             CCC-CcceeeccccCCCCCceEEEEECCCCCE----EEEEeCCCCCCEEEEEECCCC
Confidence            221 1111232    23467889999999863    55555443  35667766544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.71  E-value=1.2e-14  Score=142.17  Aligned_cols=311  Identities=11%  Similarity=0.056  Sum_probs=186.0

Q ss_pred             ceeecccccccccc--CCCceeEEecCCCcceeeeecCccCCeE---------EEEee----CCE-EEEEec-C-eEEEE
Q 013717           61 SLQTLPSVPSLQKL--SPDETINFSSASHLCINSVQLGHKLPIG---------CIAVH----HNF-LYAASS-H-EINVY  122 (437)
Q Consensus        61 ~~~~~~~~~~~~s~--s~dg~i~~~~~~~~~~~~~~~~h~~~V~---------~l~~~----~~~-l~s~~~-d-~v~vw  122 (437)
                      .+.+.+..-.+++.  +.++...+|.............|...+.         ...|+    |++ |+.++. + .|.+|
T Consensus        28 ~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~  107 (662)
T 3azo_A           28 CVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAF  107 (662)
T ss_dssp             EEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEE
T ss_pred             eeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEE
Confidence            34455555455555  5578888888643343333336666665         55454    777 776654 4 78888


Q ss_pred             eCC--C-CceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC----------CeEEEEeCCC------Cccccccccc
Q 013717          123 DRT--G-TTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD----------CKIRVWQLTP------TKHHKLKTTL  181 (437)
Q Consensus       123 d~~--~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d----------g~i~iwd~~~------~~~~~~~~~~  181 (437)
                      ++.  + +....+.... ...|...+..++|+|++  |++++.+          ..|.+||+.+      ++......  
T Consensus       108 ~~~~~g~~~~~~l~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~--  184 (662)
T 3azo_A          108 EPDAPGGAVPRPLTPVS-AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD--  184 (662)
T ss_dssp             CTTSTTCCCCEECSCCC-CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC--
T ss_pred             cCCCCCCCCCEeccCCc-cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEe--
Confidence            876  3 4333332210 01167789999999775  7777766          5899999987      43221110  


Q ss_pred             CccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECC--------CcEEEEECC-Cc---ceEEE
Q 013717          182 PTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWD--------KSLKIWRAS-DL---RCLES  247 (437)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d--------g~i~iwd~~-~~---~~~~~  247 (437)
                                                  .+...+..++|+|  ++|+.++.+        ..|++||+. ++   +....
T Consensus       185 ----------------------------~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l  236 (662)
T 3azo_A          185 ----------------------------DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL  236 (662)
T ss_dssp             ----------------------------SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE
T ss_pred             ----------------------------cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEe
Confidence                                        1345667788988  778877754        379999998 56   44444


Q ss_pred             eecccccEEEEEEecCCe-EEEEeCCC--eEEEecCCCCcccceeeEEeeCcccc--------EEEEEEccCCCEEEEEe
Q 013717          248 IKAHEDAVNAVAVSAGGT-VYTGSADR--KIRVWAKPFNEKRHALIATLEKHKSA--------VNALALSDDGTVLFSGA  316 (437)
Q Consensus       248 ~~~~~~~v~~~~~~~~~~-l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~l~~~~  316 (437)
                      ...+...+..++|+|||+ ++++..++  .|.+||+....    .......+...        +..++|+|++++++++.
T Consensus       237 ~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~----~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~  312 (662)
T 3azo_A          237 LGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA----ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG  312 (662)
T ss_dssp             EEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC----EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB
T ss_pred             CCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc----eeecccccccccCccccccCceEeEeCCCEEEEEEE
Confidence            444578899999999999 67777778  56666553322    22111222111        56789999999999999


Q ss_pred             CCCcEEEE--ECCCCccceEEeeeecccccceEEE-EeeCC--EEEEEeCCC--cEEEeeCCCCCCeeeeeeecCCCCCe
Q 013717          317 CDRSILVW--DREDSANHMVVTGALRGHGKAILCL-INVAG--LLMSGSADR--TVRIWQRGSDGRFGCLAVLEGHTKPV  389 (437)
Q Consensus       317 ~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~--~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v  389 (437)
                      . +.++||  |+.+++     ...+..+...+..+ +++++  ++++++.+.  .|.++|+.+++   .......|...+
T Consensus       313 ~-~~~~l~~~d~~~~~-----~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~---~~~l~~~~~~~~  383 (662)
T 3azo_A          313 K-GAAVLGILDPESGE-----LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR---ARTIGARHTDPV  383 (662)
T ss_dssp             S-SSCEEEEEETTTTE-----EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC---EEEEESCCCCSS
T ss_pred             c-CccEEEEEECCCCc-----EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc---eEEeecCCcccC
Confidence            8 999999  554432     22345566667777 78877  334445554  45555666654   222223443333


Q ss_pred             eEEEEEccCCCCceEEEEEecCCCcEEEEee
Q 013717          390 KSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV  420 (437)
Q Consensus       390 ~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~  420 (437)
                      ....+.+..     .+.+.+..+..|..|-+
T Consensus       384 ~~~~~~~~~-----~~~~~~~dg~~i~~~~~  409 (662)
T 3azo_A          384 DPAYYPEPQ-----IRTFTAPDGREIHAHIY  409 (662)
T ss_dssp             CGGGSCCCE-----EEEEECTTSCEEEEEEE
T ss_pred             CccccCcce-----EEEEEcCCCCEEEEEEE
Confidence            332232222     23444444446666654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.71  E-value=1.6e-13  Score=119.42  Aligned_cols=238  Identities=12%  Similarity=0.176  Sum_probs=157.6

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe-CC-eEEEEec--CCeEEEEe
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC-DG-KIFTAHQ--DCKIRVWQ  168 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~--dg~i~iwd  168 (437)
                      +|-..+.+++++  ++++++...+ .|.+||.+..............++...+..+++. ++ .++.+..  ++.|.+||
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d  106 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN  106 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence            566778999998  7777777777 9999998853222222111112455678999994 44 4555553  88999999


Q ss_pred             CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEE
Q 013717          169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLE  246 (437)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~  246 (437)
                      . +++....+.                             ..+...+.++++++  +++++...++.|.+||. .++.+.
T Consensus       107 ~-~g~~~~~~~-----------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~  155 (286)
T 1q7f_A          107 Q-YGQFVRKFG-----------------------------ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLH  155 (286)
T ss_dssp             T-TSCEEEEEC-----------------------------TTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEE
T ss_pred             C-CCcEEEEec-----------------------------CccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEE
Confidence            4 444322211                             01345678999987  55555566889999996 456666


Q ss_pred             Eee--cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCc--cccEEEEEEccCCCEEEEEeCCC-c
Q 013717          247 SIK--AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKH--KSAVNALALSDDGTVLFSGACDR-S  320 (437)
Q Consensus       247 ~~~--~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg-~  320 (437)
                      .+.  .+...+..+++++++. +++...++.|++||...     ..+..+...  ...+..++++++|+++++...++ .
T Consensus       156 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-----~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~  230 (286)
T 1q7f_A          156 KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN  230 (286)
T ss_dssp             EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE
T ss_pred             EeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-----CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE
Confidence            654  3445689999999999 56666789999998643     234444332  35789999999999888887776 9


Q ss_pred             EEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCC
Q 013717          321 ILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSD  373 (437)
Q Consensus       321 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~  373 (437)
                      |.+||.. ++....+..  ......+.+++++++  ++++ +.|+.|++|++...
T Consensus       231 i~~~~~~-g~~~~~~~~--~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          231 LTIFTQD-GQLISALES--KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEEECTT-SCEEEEEEE--SSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EEEECCC-CCEEEEEcc--cCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            9999964 332222211  112223556666644  5444 67999999998653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.71  E-value=1.8e-14  Score=128.05  Aligned_cols=199  Identities=11%  Similarity=0.100  Sum_probs=140.3

Q ss_pred             CCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc-eEEEee---------cccccEEEEEEec-CCe-EEEEe-CCCeE
Q 013717          211 HGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR-CLESIK---------AHEDAVNAVAVSA-GGT-VYTGS-ADRKI  275 (437)
Q Consensus       211 ~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-~~~~~~---------~~~~~v~~~~~~~-~~~-l~~~~-~dg~v  275 (437)
                      +-.....+++++  +++++...++.|++||..... .+..+.         .+......++++| ++. +++.+ .++.|
T Consensus        89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I  168 (329)
T 3fvz_A           89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI  168 (329)
T ss_dssp             TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred             ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence            445788999987  666666778999999986542 445442         2334689999999 777 55554 58999


Q ss_pred             EEecCCCCcccceeeEEeeC----------ccccEEEEEEccC-CCEEEEEeCCCcEEEEECCCCccceEEeeeeccccc
Q 013717          276 RVWAKPFNEKRHALIATLEK----------HKSAVNALALSDD-GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGK  344 (437)
Q Consensus       276 ~iwd~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  344 (437)
                      ++||...     ..+..+..          +-..+..++++|+ ++++++...++.|++||..+++....+.  ...+..
T Consensus       169 ~~~~~~g-----~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~--~~~~~~  241 (329)
T 3fvz_A          169 VQFSPSG-----KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK--HASFGR  241 (329)
T ss_dssp             EEECTTS-----CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC--CTTTTT
T ss_pred             EEEcCCC-----CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe--ccccCC
Confidence            9998432     23333321          2234899999998 7777777789999999998665332221  133455


Q ss_pred             ceEEEEeeCCEEEEE--------eCCCcEEEeeCCCCCCeeeeeee---cCCCCCeeEEEEEccCCCCceEEEEEecCCC
Q 013717          345 AILCLINVAGLLMSG--------SADRTVRIWQRGSDGRFGCLAVL---EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDG  413 (437)
Q Consensus       345 ~i~~~~~~~~~l~~~--------~~dg~i~iwd~~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  413 (437)
                      .+..+.+.+..++..        ..+..|++|+..+++   .+..+   .++.....+|+++|++     .++++...++
T Consensus       242 ~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~---~~~~~~~~~~~~~~p~~ia~~~dG-----~lyvad~~~~  313 (329)
T 3fvz_A          242 NVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE---IIDVFKPVRKHFDMPHDIVASEDG-----TVYIGDAHTN  313 (329)
T ss_dssp             CEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCC---EEEEECCSSSCCSSEEEEEECTTS-----EEEEEESSSC
T ss_pred             CcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCe---EEEEEcCCCCccCCeeEEEECCCC-----CEEEEECCCC
Confidence            666776666533332        234589999998877   55555   4677789999999988     3888888999


Q ss_pred             cEEEEeeccCC
Q 013717          414 EIRAWQVSVSC  424 (437)
Q Consensus       414 ~i~iw~~~~~~  424 (437)
                      .|++|+++...
T Consensus       314 ~I~~~~~~~~~  324 (329)
T 3fvz_A          314 TVWKFTLTEKM  324 (329)
T ss_dssp             CEEEEEEEECS
T ss_pred             EEEEEeCCccc
Confidence            99999998653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.70  E-value=9.1e-15  Score=144.66  Aligned_cols=277  Identities=10%  Similarity=0.073  Sum_probs=170.6

Q ss_pred             cCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC---------Ce
Q 013717           98 KLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD---------CK  163 (437)
Q Consensus        98 ~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d---------g~  163 (437)
                      .....+++|+  +++++++  + .|++||+.+++...+........+......+.|+|++  |+.++.+         +.
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence            3446688998  7788876  6 9999999997654443321111222233458889876  7777665         56


Q ss_pred             EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCC
Q 013717          164 IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASD  241 (437)
Q Consensus       164 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~  241 (437)
                      +.+||+.+++.....                               .|...+...+|+|  +.|+.+ .++.|++||+.+
T Consensus        94 ~~~~d~~~~~~~~l~-------------------------------~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~  141 (740)
T 4a5s_A           94 YDIYDLNKRQLITEE-------------------------------RIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPN  141 (740)
T ss_dssp             EEEEETTTTEECCSS-------------------------------CCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTT
T ss_pred             EEEEECCCCcEEEcc-------------------------------cCCCcceeeEECCCCCEEEEE-ECCeEEEEECCC
Confidence            779999988744321                               3667899999999  677776 578999999988


Q ss_pred             cceEEEee-cccccE-----------------EEEEEecCCe-EEEEeCCC-----------------------------
Q 013717          242 LRCLESIK-AHEDAV-----------------NAVAVSAGGT-VYTGSADR-----------------------------  273 (437)
Q Consensus       242 ~~~~~~~~-~~~~~v-----------------~~~~~~~~~~-l~~~~~dg-----------------------------  273 (437)
                      ++..+... ++...+                 ..+.|+|||+ |+.++.|.                             
T Consensus       142 ~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~  221 (740)
T 4a5s_A          142 LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKA  221 (740)
T ss_dssp             SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBT
T ss_pred             CceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCC
Confidence            87554221 222222                 3589999999 77765321                             


Q ss_pred             -------eEEEecCCC---CcccceeeEEee------CccccEEEEEEccCCCEEEEEeC----CCcEEEEECCCCcc--
Q 013717          274 -------KIRVWAKPF---NEKRHALIATLE------KHKSAVNALALSDDGTVLFSGAC----DRSILVWDREDSAN--  331 (437)
Q Consensus       274 -------~v~iwd~~~---~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~--  331 (437)
                             .|.+||+..   +... . ...+.      ++...+..++|+|||+.++....    +..|++||+.+++.  
T Consensus       222 G~~~~~~~l~v~d~~~~~~~~~~-~-~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~  299 (740)
T 4a5s_A          222 GAVNPTVKFFVVNTDSLSSVTNA-T-SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRW  299 (740)
T ss_dssp             TSCCCEEEEEEEETTSCCSSSCC-C-EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEE
T ss_pred             cCcCCeeEEEEEECCCCCCCCcc-e-EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccc
Confidence                   477788765   3210 1 11222      36677999999999996665432    34799999988761  


Q ss_pred             ----ceEEeeeecccccce-------EEEEeeCCEEE-EEe-CCC--cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717          332 ----HMVVTGALRGHGKAI-------LCLINVAGLLM-SGS-ADR--TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT  396 (437)
Q Consensus       332 ----~~~~~~~~~~~~~~i-------~~~~~~~~~l~-~~~-~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~  396 (437)
                          ...+.  ..+|...+       ..++++++.|+ ..+ .+|  .|++||+.++.    ...+......|..+.. +
T Consensus       300 ~~~~~~~l~--~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~----~~~lT~g~~~v~~~~~-~  372 (740)
T 4a5s_A          300 NCLVARQHI--EMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD----CTFITKGTWEVIGIEA-L  372 (740)
T ss_dssp             EECGGGCEE--EECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS----CEESCCSSSCEEEEEE-E
T ss_pred             ceeEEEEee--eccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc----eEecccCCEEEEEEEE-E
Confidence                11111  12233322       23444555555 554 344  58888888654    3344444556666543 4


Q ss_pred             cCCCCceEEEEEecC----CCcEEEEeec
Q 013717          397 EEGQNGVVSVFSGSL----DGEIRAWQVS  421 (437)
Q Consensus       397 ~~~~~~~~~l~s~~~----dg~i~iw~~~  421 (437)
                      +++    .+++++..    .+...||.++
T Consensus       373 d~~----~i~f~~~~~~~~~~~~~ly~v~  397 (740)
T 4a5s_A          373 TSD----YLYYISNEYKGMPGGRNLYKIQ  397 (740)
T ss_dssp             CSS----EEEEEESCGGGCTTCBEEEEEE
T ss_pred             eCC----EEEEEEecCCCCCceeEEEEEE
Confidence            443    35666654    3455666554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.68  E-value=3.7e-14  Score=127.58  Aligned_cols=276  Identities=9%  Similarity=0.028  Sum_probs=176.2

Q ss_pred             CCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEec----------C-eEEEEeCCCCceeeeeccccCCC-
Q 013717           76 PDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASS----------H-EINVYDRTGTTWTSINTFNDNDS-  140 (437)
Q Consensus        76 ~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~----------d-~v~vwd~~~~~~~~~~~~~~~~~-  140 (437)
                      .|+.+.+|+..... .+..+ .+..+  .++|+  +++|+++..          + .|.+||..+.  +.+..+..... 
T Consensus        29 ~d~~v~v~D~~t~~-~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~--~~~~~i~~~~~~  103 (361)
T 2oiz_A           29 TESRVHVYDYTNGK-FLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL--TFEKEISLPPKR  103 (361)
T ss_dssp             GGCEEEEEETTTCC-EEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC--CEEEEEEECTTB
T ss_pred             ccCeEEEEECCCCe-EEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC--cEEEEEEcCccc
Confidence            47899999976544 34455 55555  88998  888888862          4 8999999874  33333321111 


Q ss_pred             --CcccEEEEEEeCCe--EEEEec--CCeEEEEeCCCCccccc-ccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717          141 --SSGSVKSVTFCDGK--IFTAHQ--DCKIRVWQLTPTKHHKL-KTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD  213 (437)
Q Consensus       141 --h~~~v~~l~~~~~~--l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (437)
                        +......+++++++  |+++..  +++|.+||+.+++.... +.                               ...
T Consensus       104 ~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-------------------------------~~~  152 (361)
T 2oiz_A          104 VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA-------------------------------AAG  152 (361)
T ss_dssp             CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG-------------------------------GTT
T ss_pred             cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec-------------------------------CCC
Confidence              23456789999765  666653  68999999998865433 22                               111


Q ss_pred             cEEEEEeCC---CeEEEEECCCcEEEEECCC-cceEEEe------ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCC
Q 013717          214 AVTGLAVNN---GLIYSVSWDKSLKIWRASD-LRCLESI------KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPF  282 (437)
Q Consensus       214 ~v~~~~~~~---~~l~~~~~dg~i~iwd~~~-~~~~~~~------~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~  282 (437)
                       ...+.+.|   ..+++.+.||.+.+|+... ++.....      .....++ .+.+.+++. ++..+.++.|.++|+..
T Consensus       153 -~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~  230 (361)
T 2oiz_A          153 -CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSG  230 (361)
T ss_dssp             -EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSS
T ss_pred             -cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecC
Confidence             12233444   5778888999999999865 5544221      1112222 233456665 77777899999999864


Q ss_pred             CcccceeeEEeeCc----------cccEEEEEEccCCCEEEEEeC-----------CCcEEEEECCCCccceEEeeeecc
Q 013717          283 NEKRHALIATLEKH----------KSAVNALALSDDGTVLFSGAC-----------DRSILVWDREDSANHMVVTGALRG  341 (437)
Q Consensus       283 ~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~  341 (437)
                      +..  .....+...          ......++|+|+++.++++..           .+.|.+||+.+.+    ....+..
T Consensus       231 ~~~--~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~----~v~~i~~  304 (361)
T 2oiz_A          231 DEV--KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ----RVARIPG  304 (361)
T ss_dssp             SSC--EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE----EEEEEEC
T ss_pred             CCc--eecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc----EEEEEec
Confidence            431  122221110          011123789999888877653           3489999998875    3333444


Q ss_pred             cccceEEEEe--eCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCC
Q 013717          342 HGKAILCLIN--VAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEG  399 (437)
Q Consensus       342 ~~~~i~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  399 (437)
                      +.  ..++.+  ++++|++++. +.|.+||..++. .+.+..+..+......++++|++.
T Consensus       305 ~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~-l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          305 RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPE-PKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSS-CEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCc-ceeeEEeccCCCCcEEEEecCCCC
Confidence            44  555555  4568888876 999999999871 126777766777888999999873

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.68  E-value=1.9e-14  Score=140.83  Aligned_cols=283  Identities=8%  Similarity=0.044  Sum_probs=170.3

Q ss_pred             CccCCeEEEEeeCCEEEEEe----cC-eEEEEeCCCCceeeeeccccCCCCcccEE---------EEEEe--CCe---EE
Q 013717           96 GHKLPIGCIAVHHNFLYAAS----SH-EINVYDRTGTTWTSINTFNDNDSSSGSVK---------SVTFC--DGK---IF  156 (437)
Q Consensus        96 ~h~~~V~~l~~~~~~l~s~~----~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~---------~l~~~--~~~---l~  156 (437)
                      +|...|..++++++.++-..    .+ ...||....+.  ....+   ..|...+.         ...|+  |++   |+
T Consensus        21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~l---~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADG--AEESA---LPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTS--CEEES---SCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCC--Cccee---CCCCccccccccccCCccceeeeecCCCeEEE
Confidence            88999999999955444333    35 88999854321  12222   23444444         55565  543   44


Q ss_pred             EEec-CCeEEEEeCC--C-CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC
Q 013717          157 TAHQ-DCKIRVWQLT--P-TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW  230 (437)
Q Consensus       157 s~~~-dg~i~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~  230 (437)
                      .++. +..|.+|++.  . ++ ...+...+.                         ..|...+..++|+|  +.|++++.
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~-------------------------~~~~~~~~~~~~spDg~~l~~~~~  149 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGAV-PRPLTPVSA-------------------------VGGGLRWADPVLLPERGEVWCMAE  149 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCCC-CEECSCCCC-------------------------STTCEEEEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCeEEEEcCCCCCCCC-CEeccCCcc-------------------------CCCCccccCcEECCCCCEEEEEEe
Confidence            4332 4556666655  2 32 121211000                         01456788999998  78888877


Q ss_pred             C----------CcEEEEECCC------cceEEEee-cccccEEEEEEecCCe-EEEEeCC--------CeEEEecCCCCc
Q 013717          231 D----------KSLKIWRASD------LRCLESIK-AHEDAVNAVAVSAGGT-VYTGSAD--------RKIRVWAKPFNE  284 (437)
Q Consensus       231 d----------g~i~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~-l~~~~~d--------g~v~iwd~~~~~  284 (437)
                      +          ..|++||+.+      ++. ..+. .+...+..++|+|||+ |+.++.+        ..|.+||+....
T Consensus       150 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g  228 (662)
T 3azo_A          150 EFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG  228 (662)
T ss_dssp             EECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred             cccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCC
Confidence            6          5899999988      554 3444 4556788899999998 7777654        379999986211


Q ss_pred             ccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC--cEEEEECCCCccceEEeeeecccccc--------eEEEEee--
Q 013717          285 KRHALIATLEKHKSAVNALALSDDGTVLFSGACDR--SILVWDREDSANHMVVTGALRGHGKA--------ILCLINV--  352 (437)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~--------i~~~~~~--  352 (437)
                      ...........+...+..+.|+|||+++++++.++  .|++||+.+++.. .+   ...+...        +..+.+.  
T Consensus       229 ~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~-~l---~~~~~~~~~p~w~~~~~~~~~~~~  304 (662)
T 3azo_A          229 RFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT-QL---CRREEEFAGPLWTPGMRWFAPLAN  304 (662)
T ss_dssp             CEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE-ES---SCCSSBSSCCCCSTTCCSEEECTT
T ss_pred             cccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee-ec---ccccccccCccccccCceEeEeCC
Confidence            11122233334567899999999999888888888  6666676554321 11   1112111        2345544  


Q ss_pred             CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          353 AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       353 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      +.+++++.. +.++||.+....  ..+..+..|...+..+. +++++.   .++++++.+....+|.++
T Consensus       305 ~~~~~~~~~-~~~~l~~~d~~~--~~~~~l~~~~~~~~~~~-s~~~~~---~~~~~~~~~~~~~i~~~d  366 (662)
T 3azo_A          305 GLIAVVHGK-GAAVLGILDPES--GELVDAAGPWTEWAATL-TVSGTR---AVGVAASPRTAYEVVELD  366 (662)
T ss_dssp             SCEEEEEBS-SSCEEEEEETTT--TEEEECCSSCCEEEEEE-EEETTE---EEEEEEETTEEEEEEEEE
T ss_pred             CEEEEEEEc-CccEEEEEECCC--CcEEEecCCCCeEEEEE-ecCCCE---EEEEEcCCCCCCEEEEEE
Confidence            558888888 999999443221  13567777877787761 444432   355555666555555443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.67  E-value=3.9e-15  Score=136.10  Aligned_cols=285  Identities=8%  Similarity=-0.005  Sum_probs=166.9

Q ss_pred             eEEEEee--CCEEEEEec---C-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCC
Q 013717          101 IGCIAVH--HNFLYAASS---H-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPT  172 (437)
Q Consensus       101 V~~l~~~--~~~l~s~~~---d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~  172 (437)
                      +.+++|+  |++|+....   + .|.+||+.+++...+..     ++......+.|+|+.  |+.++.++.|.+||+.++
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-----~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~  112 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE-----GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETL  112 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC-----SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec-----CCCCccccceECCCCCEEEEEEcCCcEEEEECCCC
Confidence            6778888  888776643   3 78999998865433321     222223347789765  888888899999999877


Q ss_pred             cccccccccCcc--ccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEE-----ECCCcEEEEECCCcc
Q 013717          173 KHHKLKTTLPTV--NDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSV-----SWDKSLKIWRASDLR  243 (437)
Q Consensus       173 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~-----~~dg~i~iwd~~~~~  243 (437)
                      +...........  ......+........       .      ....+.++|  +.++.+     ..+..|.+||+.+++
T Consensus       113 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~-------~------~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~  179 (396)
T 3c5m_A          113 EEQVIYTVDEEWKGYGTWVANSDCTKLVG-------I------EILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE  179 (396)
T ss_dssp             CEEEEEECCTTEEEEEEEEECTTSSEEEE-------E------EEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC
T ss_pred             CcEEEEecccccCCCCCEEEeccCCcccc-------c------cccccccCCCCcceeeeeeccCCCcceEEEEECCCCc
Confidence            543322211000  000000000000000       0      000122333  333332     356789999999887


Q ss_pred             eEEEeecccccEEEEEEec-CCe-EEEEeCC------CeEEEecCCCCcccceeeEEeeCc--cccEEEEEEccCCCEEE
Q 013717          244 CLESIKAHEDAVNAVAVSA-GGT-VYTGSAD------RKIRVWAKPFNEKRHALIATLEKH--KSAVNALALSDDGTVLF  313 (437)
Q Consensus       244 ~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~  313 (437)
                      ..... .+...+..+.|+| ++. |+..+.+      ..|.+||+....     ...+..+  ...+..++|+|||++|+
T Consensus       180 ~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~~~~~~~~~~~~~spdg~~l~  253 (396)
T 3c5m_A          180 LEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-----VRKIKEHAEGESCTHEFWIPDGSAMA  253 (396)
T ss_dssp             EEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-----CEESSCCCTTEEEEEEEECTTSSCEE
T ss_pred             EEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-----eeEeeccCCCccccceEECCCCCEEE
Confidence            65544 4667799999999 777 6666543      358888875332     1222222  33588899999999887


Q ss_pred             EEeCC-----CcEEEEECCCCccceEEeeeecccccceEEEEe-eCCEEEEEe----------------CCCcEEEeeCC
Q 013717          314 SGACD-----RSILVWDREDSANHMVVTGALRGHGKAILCLIN-VAGLLMSGS----------------ADRTVRIWQRG  371 (437)
Q Consensus       314 ~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~----------------~dg~i~iwd~~  371 (437)
                      .++.+     +.|++||+.+++...  .....++.   ..+.. ++.+++.++                .++.|++||+.
T Consensus       254 ~~~~~~~~~~~~l~~~d~~~g~~~~--l~~~~~~~---~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~  328 (396)
T 3c5m_A          254 YVSYFKGQTDRVIYKANPETLENEE--VMVMPPCS---HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK  328 (396)
T ss_dssp             EEEEETTTCCEEEEEECTTTCCEEE--EEECCSEE---EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred             EEecCCCCccceEEEEECCCCCeEE--eeeCCCCC---CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence            77554     459999998765322  11222221   44455 666777654                34789999998


Q ss_pred             CCCCeeeeeeecCCCC-----------CeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717          372 SDGRFGCLAVLEGHTK-----------PVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       372 ~~~~~~~~~~~~~h~~-----------~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                      +++.    ..+..+..           .+..++|+|++..    ++++...++...+|.++.
T Consensus       329 ~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~----l~~~s~~~~~~~l~~~~~  382 (396)
T 3c5m_A          329 AKSA----QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDG----VLFTSDFEGVPAIYIADV  382 (396)
T ss_dssp             TTBC----CEEEECCCCCCCBTTBSSTTCCCCEECTTSSE----EEEEECTTSSCEEEEEEC
T ss_pred             cCce----EEccCCCCccccccccccCCCCCceEccCCCe----EEEEecCCCCceEEEEEE
Confidence            7652    23333433           2567789998752    455555567777777653

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.67  E-value=4e-14  Score=127.35  Aligned_cols=261  Identities=13%  Similarity=0.089  Sum_probs=167.4

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEe----------cCCeEEEEeCCCCcccccccccCccc
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAH----------QDCKIRVWQLTPTKHHKLKTTLPTVN  185 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~  185 (437)
                      .|.+||..+++.  +..+   ..+..+  .++|++++  ++++.          .++.|.+||..+.+....+...+.. 
T Consensus        32 ~v~v~D~~t~~~--~~~i---~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~-  103 (361)
T 2oiz_A           32 RVHVYDYTNGKF--LGMV---PTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR-  103 (361)
T ss_dssp             EEEEEETTTCCE--EEEE---ECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB-
T ss_pred             eEEEEECCCCeE--EEEe---cCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc-
Confidence            899999988643  3344   234444  89999776  66554          3678999999877654433211100 


Q ss_pred             cceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC--CCcEEEEECCCcceEEE-eecccccEEEEEE
Q 013717          186 DRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW--DKSLKIWRASDLRCLES-IKAHEDAVNAVAV  260 (437)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~  260 (437)
                                             ..+......++++|  ++|+++..  ++.|.+||+.+++.+.. +.. . ....+.+
T Consensus       104 -----------------------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~  158 (361)
T 2oiz_A          104 -----------------------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIP  158 (361)
T ss_dssp             -----------------------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEE
T ss_pred             -----------------------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEE
Confidence                                   01223456788887  78887764  68999999999988877 542 2 2333567


Q ss_pred             ecCCe--EEEEeCCCeEEEecCCCCcccceee---EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEE
Q 013717          261 SAGGT--VYTGSADRKIRVWAKPFNEKRHALI---ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVV  335 (437)
Q Consensus       261 ~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (437)
                      .|++.  +++.+.||.+.+|++..........   ..+.....+ ..+.+++++..++..+.++.|.++|+.........
T Consensus       159 ~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~  237 (361)
T 2oiz_A          159 QPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDG  237 (361)
T ss_dssp             CTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEE
T ss_pred             cCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecc
Confidence            78763  8888999999999875422111011   111112222 23445677877777888999999999754322111


Q ss_pred             eeeec----------ccccceEEEEeeCCEEEEEeC-----------CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEE
Q 013717          336 TGALR----------GHGKAILCLINVAGLLMSGSA-----------DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTA  394 (437)
Q Consensus       336 ~~~~~----------~~~~~i~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~  394 (437)
                      .....          ........+..+++.++++..           .+.|.+||+.+.+   .+..+..+.  +.+|+|
T Consensus       238 ~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~---~v~~i~~~~--p~~ia~  312 (361)
T 2oiz_A          238 PWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ---RVARIPGRD--ALSMTI  312 (361)
T ss_dssp             EEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE---EEEEEECTT--CCEEEE
T ss_pred             cccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc---EEEEEecCC--eeEEEE
Confidence            10000          011122455555565555432           3479999999876   777887776  999999


Q ss_pred             EccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          395 VTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       395 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      +|++.     +|++++. +.|.+||..++
T Consensus       313 spdg~-----~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          313 DQQRN-----LMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             ETTTT-----EEEEECS-SCEEEEECSSS
T ss_pred             CCCCC-----EEEEeCC-CeEEEEECCCC
Confidence            99985     6777766 99999999988

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.66  E-value=1.8e-13  Score=122.74  Aligned_cols=252  Identities=9%  Similarity=0.064  Sum_probs=160.3

Q ss_pred             CeEEEEeeCCEEEEEe---------cC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC---C--
Q 013717          100 PIGCIAVHHNFLYAAS---------SH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD---C--  162 (437)
Q Consensus       100 ~V~~l~~~~~~l~s~~---------~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d---g--  162 (437)
                      .+...+++|++++...         .+ .|.+||+.+++...+          ..+..+.|+|++  |+.++.+   +  
T Consensus        16 ~~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----------~~~~~~~~SpDg~~la~~~~~~~~~~~   85 (347)
T 2gop_A           16 YLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----------ENATMPRISPDGKKIAFMRANEEKKVS   85 (347)
T ss_dssp             EEEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----------ESCEEEEECTTSSEEEEEEEETTTTEE
T ss_pred             EcccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----------ccCCCeEECCCCCEEEEEEeccCCCcc
Confidence            3455555776666542         24 899999998643332          457889999775  6666543   3  


Q ss_pred             eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC----------
Q 013717          163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW----------  230 (437)
Q Consensus       163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~----------  230 (437)
                      .|.+|++.+++......                               +.. +..+.|+|  +.|+.++.          
T Consensus        86 ~l~~~~~~~g~~~~l~~-------------------------------~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~  133 (347)
T 2gop_A           86 EIWVADLETLSSKKILE-------------------------------AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIF  133 (347)
T ss_dssp             EEEEEETTTTEEEEEEE-------------------------------ESE-EEEEEECTTSSEEEEEEECCCC------
T ss_pred             eEEEEECCCCceEEEEc-------------------------------CCC-ccceeECCCCCEEEEEEccCCCcCCcEE
Confidence            37777887665322211                               223 78889987  66776653          


Q ss_pred             -----------------CCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCC------C-eEEEecCCCCccc
Q 013717          231 -----------------DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSAD------R-KIRVWAKPFNEKR  286 (437)
Q Consensus       231 -----------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d------g-~v~iwd~~~~~~~  286 (437)
                                       ...|.+||+.+++.+..+.. . .+..++|+|+|.++++..+      . ...+|.+. ..  
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d-~~--  208 (347)
T 2gop_A          134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE-DG--  208 (347)
T ss_dssp             ---CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE-TT--
T ss_pred             EcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC-CC--
Confidence                             25799999998877455554 3 7889999999943344333      1 34555443 21  


Q ss_pred             ceeeEEeeCccccEEEEEEccCCCEEEEEeCC--------CcEEEEECCCCccceEEeeeecccccceEE-EEeeCCEEE
Q 013717          287 HALIATLEKHKSAVNALALSDDGTVLFSGACD--------RSILVWDREDSANHMVVTGALRGHGKAILC-LINVAGLLM  357 (437)
Q Consensus       287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~l~  357 (437)
                       + ...+..+ ..+..+  +|||++|+.++.+        ..|++||  +++    .......+...+.. +.|+..+++
T Consensus       209 -~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~----~~~l~~~~~~~~~~~~~~sdg~~~  277 (347)
T 2gop_A          209 -K-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE----VMGILDEVDRGVGQAKIKDGKVYF  277 (347)
T ss_dssp             -E-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC----EEESSTTCCSEEEEEEEETTEEEE
T ss_pred             -c-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCc----eEeccccCCcccCCccEEcCcEEE
Confidence             1 2222223 445444  9999988877654        3688888  332    12223344555654 666522888


Q ss_pred             EEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcE-EEEeec
Q 013717          358 SGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEI-RAWQVS  421 (437)
Q Consensus       358 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i-~iw~~~  421 (437)
                      +++.++.++|| +.+++   . ..+..+...|.+++|++ .      ++++++.++.. .+|.++
T Consensus       278 ~~~~~~~~~l~-~~~g~---~-~~~~~~~~~v~~~~~s~-~------~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          278 TLFEEGSVNLY-IWDGE---I-KPIAKGRHWIMGFDVDE-I------VVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEETTEEEEE-EESSS---E-EEEECSSSEEEEEEESS-S------EEEEEECSSSCCEEEEES
T ss_pred             EEecCCcEEEE-EcCCc---e-EEEecCCCeEEeeeeeC-c------EEEEEcCCCChHHheEeC
Confidence            89999999999 87433   3 33444577899999998 4      67777777765 888876

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.66  E-value=6.2e-13  Score=118.45  Aligned_cols=263  Identities=10%  Similarity=0.053  Sum_probs=166.5

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTF  135 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~  135 (437)
                      .++.+.+....+.+++.++.+..|.    ......+ ++...+.+++|+  +++++++..+ .|.+||.++++...... 
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~-   83 (333)
T 2dg1_A            9 PTLFYSGKSNSAVPIISESELQTIT----AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV-   83 (333)
T ss_dssp             CBCCSCGGGGCSSCCCCGGGSCEEE----CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE-
T ss_pred             ceeeecCCccceeEEeecccCcccc----cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee-
Confidence            3566777777778778888888882    3344455 777788999998  7777778777 99999998865443321 


Q ss_pred             ccCCCCcccEEEEEEeCCe-EEEEe-cC----CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717          136 NDNDSSSGSVKSVTFCDGK-IFTAH-QD----CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI  209 (437)
Q Consensus       136 ~~~~~h~~~v~~l~~~~~~-l~s~~-~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (437)
                          .+...+.+++++++. ++.+. .+    +.|.+||.+++.........                            
T Consensus        84 ----~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----------------------------  131 (333)
T 2dg1_A           84 ----SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL----------------------------  131 (333)
T ss_dssp             ----CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS----------------------------
T ss_pred             ----CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC----------------------------
Confidence                255789999999665 55444 44    58999998876532111100                            


Q ss_pred             cCCCcEEEEEeCC-CeEEEEEC-------CCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EE-EEeCCCeEEEec
Q 013717          210 EHGDAVTGLAVNN-GLIYSVSW-------DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY-TGSADRKIRVWA  279 (437)
Q Consensus       210 ~~~~~v~~~~~~~-~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~dg~v~iwd  279 (437)
                      .+...+.++++++ ..++.+..       .+.|..+|..+++... +......+..++|+|++. ++ +...++.|.+||
T Consensus       132 ~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d  210 (333)
T 2dg1_A          132 STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIA  210 (333)
T ss_dssp             SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEE
Confidence            1345788999988 44444444       3567777766554433 323344688999999997 54 445678999999


Q ss_pred             CCCCccccee-----eEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeee--cccccceEEEEee
Q 013717          280 KPFNEKRHAL-----IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGAL--RGHGKAILCLINV  352 (437)
Q Consensus       280 ~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~i~~~~~~  352 (437)
                      +.........     ...+.++ ..+..++++++|+++++...++.|.+||.. ++....+....  .+|...+.+++++
T Consensus       211 ~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~  288 (333)
T 2dg1_A          211 LEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFI  288 (333)
T ss_dssp             ECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEEC
T ss_pred             ecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEEC
Confidence            8532211111     1111222 467889999999988887778999999984 33222221100  0111245666665


Q ss_pred             C--CEEEEEeCC
Q 013717          353 A--GLLMSGSAD  362 (437)
Q Consensus       353 ~--~~l~~~~~d  362 (437)
                      +  ..|+.++.+
T Consensus       289 ~dg~~L~v~~~~  300 (333)
T 2dg1_A          289 PGTNQLIICSND  300 (333)
T ss_dssp             TTSCEEEEEEEC
T ss_pred             CCCCEEEEEeCc
Confidence            3  466555554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.64  E-value=5e-13  Score=119.06  Aligned_cols=273  Identities=10%  Similarity=0.048  Sum_probs=167.3

Q ss_pred             CCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-E-EEEecCCeEEEEeCCCCc
Q 013717           99 LPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-I-FTAHQDCKIRVWQLTPTK  173 (437)
Q Consensus        99 ~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l-~s~~~dg~i~iwd~~~~~  173 (437)
                      ..|.+++|+  +..++..+.+ .++.|.-     .....+   ..+...+.+++|+++. | +++..++.|.+||.++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~   77 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITA-----EPWLEI---SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE   77 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEEC-----EEEEEE---ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred             cccceeeecCCccceeEEeecccCccccc-----ceeEEE---eccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc
Confidence            346677777  4455555556 8888832     222222   2355677999999665 4 467788999999998765


Q ss_pred             ccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECC----CcEEEEECCCcceEEE
Q 013717          174 HHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWD----KSLKIWRASDLRCLES  247 (437)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d----g~i~iwd~~~~~~~~~  247 (437)
                      .....                              ..+...+.++++++  +++++...+    +.|.+||..+++....
T Consensus        78 ~~~~~------------------------------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~  127 (333)
T 2dg1_A           78 IKRPF------------------------------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI  127 (333)
T ss_dssp             EEEEE------------------------------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE
T ss_pred             EEEEe------------------------------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEE
Confidence            32211                              12456799999987  445544444    5899999988766533


Q ss_pred             ee--cccccEEEEEEecCCeEEEEeC-------CCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEE-EeC
Q 013717          248 IK--AHEDAVNAVAVSAGGTVYTGSA-------DRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFS-GAC  317 (437)
Q Consensus       248 ~~--~~~~~v~~~~~~~~~~l~~~~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~  317 (437)
                      +.  .....+.+++++|+|.++.+..       .+.|..+|.....    . ..+......+..++|+|+|+.|+. .+.
T Consensus       128 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~----~-~~~~~~~~~~~~i~~~~dg~~l~v~~~~  202 (333)
T 2dg1_A          128 IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT----V-TPIIQNISVANGIALSTDEKVLWVTETT  202 (333)
T ss_dssp             ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC----E-EEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE----E-EEeecCCCcccceEECCCCCEEEEEeCC
Confidence            32  2345789999999999555554       2556666543221    1 122223345789999999986654 456


Q ss_pred             CCcEEEEECCC-CccceEE----eeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCC----
Q 013717          318 DRSILVWDRED-SANHMVV----TGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHT----  386 (437)
Q Consensus       318 dg~i~i~d~~~-~~~~~~~----~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~----  386 (437)
                      ++.|.+||+.. +.....+    .....++ ..+..+.++  ++++++...++.|.+||.. ++   .+..+..+.    
T Consensus       203 ~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~---~~~~~~~~~~~~g  277 (333)
T 2dg1_A          203 ANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GY---PIGQILIPGRDEG  277 (333)
T ss_dssp             GTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SC---EEEEEECTTGGGT
T ss_pred             CCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-CC---EEEEEEcCCCccc
Confidence            78999999964 2222111    1111222 244556665  4466666678899999984 43   344444332    


Q ss_pred             --CCeeEEEEEccCCCCceEEEEEecCC---CcEEEEeeccC
Q 013717          387 --KPVKSLTAVTEEGQNGVVSVFSGSLD---GEIRAWQVSVS  423 (437)
Q Consensus       387 --~~v~~l~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~  423 (437)
                        ..+.+++|++++.    .++++...+   ..-.||.++..
T Consensus       278 ~~~~~~~~~~~~dg~----~L~v~~~~g~~~~~~~l~~~~~~  315 (333)
T 2dg1_A          278 HMLRSTHPQFIPGTN----QLIICSNDIEMGGGSMLYTVNGF  315 (333)
T ss_dssp             CSCBCCEEEECTTSC----EEEEEEECGGGTCCEEEEEEECS
T ss_pred             cccCcceEEECCCCC----EEEEEeCccCCCCCceEEEEecc
Confidence              2689999998754    234444431   23566666544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.63  E-value=1.1e-12  Score=116.31  Aligned_cols=260  Identities=12%  Similarity=0.065  Sum_probs=172.4

Q ss_pred             C-eEEEEeCCCCceeeeecc-ccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecC
Q 013717          117 H-EINVYDRTGTTWTSINTF-NDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFML  193 (437)
Q Consensus       117 d-~v~vwd~~~~~~~~~~~~-~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  193 (437)
                      + .|.+||.++++....... ............+.+.++. +++...++.|.+||..+++....+.              
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~--------------   81 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT--------------   81 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE--------------
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC--------------
Confidence            6 999999998644321110 0011233557888888887 5555667999999999887544332              


Q ss_pred             CCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEE-CCCcEEEEECCCcceEEEeeccc-----ccEEEEEEecCCeE
Q 013717          194 PNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVS-WDKSLKIWRASDLRCLESIKAHE-----DAVNAVAVSAGGTV  266 (437)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~l  266 (437)
                                       .......+++++ ..++++. .++.|.+||..+++....+....     .....+++ .++++
T Consensus        82 -----------------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~l  143 (328)
T 3dsm_A           82 -----------------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYV  143 (328)
T ss_dssp             -----------------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEE
T ss_pred             -----------------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEE
Confidence                             334577888854 6666666 79999999999998887776332     14556777 56665


Q ss_pred             EEEe--CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC----------CcEEEEECCCCccceE
Q 013717          267 YTGS--ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD----------RSILVWDREDSANHMV  334 (437)
Q Consensus       267 ~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~  334 (437)
                      +++.  .++.|.++|+.+..    .+..+.. ......++++|+|++++++..+          +.|.++|..+++....
T Consensus       144 yv~~~~~~~~v~viD~~t~~----~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~  218 (328)
T 3dsm_A          144 YVNCWSYQNRILKIDTETDK----VVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ  218 (328)
T ss_dssp             EEEECTTCCEEEEEETTTTE----EEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE
T ss_pred             EEEcCCCCCEEEEEECCCCe----EEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEE
Confidence            5554  48999999987543    3444443 3345788999999877776655          7899999987653222


Q ss_pred             EeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEe---
Q 013717          335 VTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSG---  409 (437)
Q Consensus       335 ~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~---  409 (437)
                      +.  .. .......++++  ++.|+++..  .|.+||..+++.. ....+..+.....+++++|+++.    ++++.   
T Consensus       219 ~~--~~-~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~-~~~~~~~~~~~p~gi~vdp~~g~----lyva~~~~  288 (328)
T 3dsm_A          219 FK--FK-LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP-VRPFLEFRDTKYYGLTVNPNNGE----VYVADAID  288 (328)
T ss_dssp             EE--CC-TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC-SSCSBCCCSSCEEEEEECTTTCC----EEEEECTT
T ss_pred             Ee--cC-CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee-eeeeecCCCCceEEEEEcCCCCe----EEEEcccc
Confidence            11  11 12245667776  457766654  8999999876621 11112222467889999996553    66666   


Q ss_pred             -cCCCcEEEEeeccCC
Q 013717          410 -SLDGEIRAWQVSVSC  424 (437)
Q Consensus       410 -~~dg~i~iw~~~~~~  424 (437)
                       ..++.|.+||.+ ++
T Consensus       289 y~~~~~V~v~d~~-g~  303 (328)
T 3dsm_A          289 YQQQGIVYRYSPQ-GK  303 (328)
T ss_dssp             SSSEEEEEEECTT-CC
T ss_pred             cccCCEEEEECCC-CC
Confidence             678999999988 54

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.62  E-value=4.9e-13  Score=118.68  Aligned_cols=259  Identities=7%  Similarity=0.029  Sum_probs=167.4

Q ss_pred             CCCceeEEecCCCcceeeeec-C-----ccCCeEEEEeeCCEE-EEEecC-eEEEEeCCCCceeeeeccccCCCCcccEE
Q 013717           75 SPDETINFSSASHLCINSVQL-G-----HKLPIGCIAVHHNFL-YAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVK  146 (437)
Q Consensus        75 s~dg~i~~~~~~~~~~~~~~~-~-----h~~~V~~l~~~~~~l-~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~  146 (437)
                      +.++.|.+++..........+ .     .......+++.++.+ ++...+ .|.+||..+++  .+.++.    ......
T Consensus        14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~--~~~~i~----~~~~p~   87 (328)
T 3dsm_A           14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFK--EVGRIT----GFTSPR   87 (328)
T ss_dssp             SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCC--EEEEEE----CCSSEE
T ss_pred             CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccE--EEEEcC----CCCCCc
Confidence            347899999987644332221 1     224467788885444 444445 99999999853  344441    346788


Q ss_pred             EEEEe-CCeEEEEe-cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCe
Q 013717          147 SVTFC-DGKIFTAH-QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGL  224 (437)
Q Consensus       147 ~l~~~-~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  224 (437)
                      .++++ ++.++.+. .++.|.+||..+++....+..-..                         .+.......+++..+.
T Consensus        88 ~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~-------------------------~~~~~~p~~i~~~~~~  142 (328)
T 3dsm_A           88 YIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM-------------------------DMESGSTEQMVQYGKY  142 (328)
T ss_dssp             EEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC-------------------------CTTTCBCCCEEEETTE
T ss_pred             EEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc-------------------------cccCCCcceEEEECCE
Confidence            99996 44555555 789999999998764433221000                         0011133455555566


Q ss_pred             EEEEE--CCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeC-C----------CeEEEecCCCCcccceeeE
Q 013717          225 IYSVS--WDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSA-D----------RKIRVWAKPFNEKRHALIA  291 (437)
Q Consensus       225 l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~-d----------g~v~iwd~~~~~~~~~~~~  291 (437)
                      ++++.  .++.|.++|..+++.+..+.. ......++++|+|+++.++. +          +.|.++|..+..    ...
T Consensus       143 lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~----v~~  217 (328)
T 3dsm_A          143 VYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT----VEK  217 (328)
T ss_dssp             EEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE----EEE
T ss_pred             EEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe----EEE
Confidence            66665  489999999999998887764 33457889999999554443 3          789999876543    343


Q ss_pred             EeeCc-cccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC--C-EEEEE----eCCC
Q 013717          292 TLEKH-KSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--G-LLMSG----SADR  363 (437)
Q Consensus       292 ~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~l~~~----~~dg  363 (437)
                      .+... ...+..++++|++++|+++..  .|.+||..+++....  ............+++++  . ++++.    ..++
T Consensus       218 ~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~--~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~  293 (328)
T 3dsm_A          218 QFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR--PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQG  293 (328)
T ss_dssp             EEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS--CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEE
T ss_pred             EEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeee--eeecCCCCceEEEEEcCCCCeEEEEcccccccCC
Confidence            44322 346899999999999988765  899999987653211  11111134556677754  3 55555    5688


Q ss_pred             cEEEeeCCCCC
Q 013717          364 TVRIWQRGSDG  374 (437)
Q Consensus       364 ~i~iwd~~~~~  374 (437)
                      .|.+||.. ++
T Consensus       294 ~V~v~d~~-g~  303 (328)
T 3dsm_A          294 IVYRYSPQ-GK  303 (328)
T ss_dssp             EEEEECTT-CC
T ss_pred             EEEEECCC-CC
Confidence            99999998 55

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.62  E-value=1.2e-12  Score=116.27  Aligned_cols=244  Identities=9%  Similarity=0.034  Sum_probs=160.1

Q ss_pred             cCCeEEEEee--CCEEEEEecC-------------------------eEEEEeCCCCceeeeeccccCCCCcccEEEEEE
Q 013717           98 KLPIGCIAVH--HNFLYAASSH-------------------------EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTF  150 (437)
Q Consensus        98 ~~~V~~l~~~--~~~l~s~~~d-------------------------~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~  150 (437)
                      -+.+.+++++  |+++++...+                         .|.+||..+++..  ..+.  .++-..+..|++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~--~~~~~~p~gia~   98 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL--QSSG--KNLFYLPHGLSI   98 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE--EEEC--TTTCSSEEEEEE
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE--eccC--CCccCCceEEEE
Confidence            3568888888  7777777665                         4999999876443  2221  245567899999


Q ss_pred             eCCe--EEEEecCCeEEEEeCCCCc-ccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---Ce
Q 013717          151 CDGK--IFTAHQDCKIRVWQLTPTK-HHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GL  224 (437)
Q Consensus       151 ~~~~--l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~  224 (437)
                      +++.  +++...++.|++|+.+... ....+.......                     .-.++......+++++   .+
T Consensus        99 d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g---------------------~~~~~~~~P~~ia~~~~~g~l  157 (329)
T 3fvz_A           99 DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPG---------------------SDQNHFCQPTDVAVEPSTGAV  157 (329)
T ss_dssp             CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCC---------------------CSTTCCSSEEEEEECTTTCCE
T ss_pred             CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCC---------------------CCccccCCCcEEEEeCCCCeE
Confidence            9665  6666678999999986542 111111000000                     0012445688999986   44


Q ss_pred             EEEEE-CCCcEEEEECCCcceEEEeecc----------cccEEEEEEecC-Ce-EEEEeCCCeEEEecCCCCcccceeeE
Q 013717          225 IYSVS-WDKSLKIWRASDLRCLESIKAH----------EDAVNAVAVSAG-GT-VYTGSADRKIRVWAKPFNEKRHALIA  291 (437)
Q Consensus       225 l~~~~-~dg~i~iwd~~~~~~~~~~~~~----------~~~v~~~~~~~~-~~-l~~~~~dg~v~iwd~~~~~~~~~~~~  291 (437)
                      +++.+ .++.|++|| .+++.+..+...          -.....++++|+ +. +++...++.|++||..++    +.+.
T Consensus       158 yv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G----~~~~  232 (329)
T 3fvz_A          158 FVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK----EFVR  232 (329)
T ss_dssp             EEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC----CEEE
T ss_pred             EEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC----cEEE
Confidence            44444 589999999 567777766422          234889999998 77 677778899999987633    3444


Q ss_pred             Eee--CccccEEEEEEcc------CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeC
Q 013717          292 TLE--KHKSAVNALALSD------DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSA  361 (437)
Q Consensus       292 ~~~--~~~~~i~~~~~~~------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~  361 (437)
                      .+.  .+...+..++|+|      +|+..++...+..|++||..+++....+ ....++......++++++  ++++...
T Consensus       233 ~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~-~~~~~~~~~p~~ia~~~dG~lyvad~~  311 (329)
T 3fvz_A          233 EIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF-KPVRKHFDMPHDIVASEDGTVYIGDAH  311 (329)
T ss_dssp             EECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE-CCSSSCCSSEEEEEECTTSEEEEEESS
T ss_pred             EEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE-cCCCCccCCeeEEEECCCCCEEEEECC
Confidence            442  3556788999999      3333333344568999999887633322 111345566777777655  7777888


Q ss_pred             CCcEEEeeCCC
Q 013717          362 DRTVRIWQRGS  372 (437)
Q Consensus       362 dg~i~iwd~~~  372 (437)
                      ++.|++|++..
T Consensus       312 ~~~I~~~~~~~  322 (329)
T 3fvz_A          312 TNTVWKFTLTE  322 (329)
T ss_dssp             SCCEEEEEEEE
T ss_pred             CCEEEEEeCCc
Confidence            99999999864

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.62  E-value=8.4e-14  Score=126.91  Aligned_cols=265  Identities=8%  Similarity=-0.001  Sum_probs=161.9

Q ss_pred             eeeccccccccccCC-Cce--eEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeec
Q 013717           62 LQTLPSVPSLQKLSP-DET--INFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINT  134 (437)
Q Consensus        62 ~~~~~~~~~~~s~s~-dg~--i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~  134 (437)
                      ..++|....++..+. ++.  |.+|+.... ...... +|...+..++|+  |+.|+.++.+ .|++||+.+++...+..
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g-~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~  119 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ-VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ  119 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTC-EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCC-ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee
Confidence            467788887777776 674  666666553 333444 777777677888  8999999988 99999999976555544


Q ss_pred             cccCCCCcccEEEEEE--eCCe-EEEE-----------------------ecCCeEEEEeCCCCcccccccccCccccce
Q 013717          135 FNDNDSSSGSVKSVTF--CDGK-IFTA-----------------------HQDCKIRVWQLTPTKHHKLKTTLPTVNDRL  188 (437)
Q Consensus       135 ~~~~~~h~~~v~~l~~--~~~~-l~s~-----------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  188 (437)
                      .     +...+....|  +++. ++.+                       ..+..|.+||+.+++....           
T Consensus       120 ~-----~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-----------  183 (388)
T 3pe7_A          120 V-----PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI-----------  183 (388)
T ss_dssp             C-----CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE-----------
T ss_pred             c-----hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEe-----------
Confidence            3     4444444443  5554 3331                       2346788888887753222           


Q ss_pred             eeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECC------CcEEEEECCCcceEEEeeccc--ccEEE
Q 013717          189 LRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWD------KSLKIWRASDLRCLESIKAHE--DAVNA  257 (437)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~--~~v~~  257 (437)
                                          ..+...+..+.|+|   +.|+.+..+      ..|.++|...++.. .+..+.  ..+..
T Consensus       184 --------------------~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~  242 (388)
T 3pe7_A          184 --------------------LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTH  242 (388)
T ss_dssp             --------------------EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEE
T ss_pred             --------------------ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCccccc
Confidence                                13556688888987   556666553      37888888765543 333333  35788


Q ss_pred             EEEecCCe-EEEEeC-CC----eEEEecCCCCcccceeeEEeeCcccc---EEEEEEccCCCEEEEE---------eCCC
Q 013717          258 VAVSAGGT-VYTGSA-DR----KIRVWAKPFNEKRHALIATLEKHKSA---VNALALSDDGTVLFSG---------ACDR  319 (437)
Q Consensus       258 ~~~~~~~~-l~~~~~-dg----~v~iwd~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~l~~~---------~~dg  319 (437)
                      ++|+|||+ |+..+. ++    .|.+||+.++..  ..+..+..+...   ...+.|+|||+.|+..         ..+.
T Consensus       243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~  320 (388)
T 3pe7_A          243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN--RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDP  320 (388)
T ss_dssp             EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE--EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCC
T ss_pred             ceECCCCCEEEEEecCCCCCcceEEEEecCCCce--EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCC
Confidence            99999998 655443 22    399999876542  223233321111   1123799999988754         4567


Q ss_pred             cEEEEECCCCccceEEeeeeccccc-----------ceEEEE--eeCCEEEE-EeCCCcEEEeeCC
Q 013717          320 SILVWDREDSANHMVVTGALRGHGK-----------AILCLI--NVAGLLMS-GSADRTVRIWQRG  371 (437)
Q Consensus       320 ~i~i~d~~~~~~~~~~~~~~~~~~~-----------~i~~~~--~~~~~l~~-~~~dg~i~iwd~~  371 (437)
                      .|++||+.+++.. .+    ..+..           .+..+.  ++++.|+. +..+|...||.+.
T Consensus       321 ~i~~~d~~~~~~~-~l----~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          321 FLYVFNMKNGTQH-RV----ARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             EEEEEETTTTEEE-EE----EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             EEEEEeccCCceE-Ee----ccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence            8999999876432 12    22222           234344  44555554 4457777777554

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.59  E-value=1.7e-12  Score=111.87  Aligned_cols=237  Identities=10%  Similarity=0.040  Sum_probs=155.0

Q ss_pred             cEEEEEEeCCe-EEE-E-ecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe
Q 013717          144 SVKSVTFCDGK-IFT-A-HQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV  220 (437)
Q Consensus       144 ~v~~l~~~~~~-l~s-~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  220 (437)
                      ...+++++++. ++. + ..++.|.+|+..+.......                              ..+...+.++++
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~------------------------------~~~~~~p~~i~~   74 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP------------------------------FNGLYQPQGLAV   74 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC------------------------------CCSCCSCCCEEE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe------------------------------eCCcCCcceeEE
Confidence            78899998665 554 5 67889999987654321110                              012345677888


Q ss_pred             CC-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccc
Q 013717          221 NN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKS  298 (437)
Q Consensus       221 ~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  298 (437)
                      ++ ..++.+..++.|.+||................+..+++.++|. +++...++.|.+|+.....    ..........
T Consensus        75 ~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~----~~~~~~~~~~  150 (270)
T 1rwi_B           75 DGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT----QTVLPFTGLN  150 (270)
T ss_dssp             CTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS----CEECCCCSCC
T ss_pred             CCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce----eEeeccccCC
Confidence            87 4455555588999999876544322212335789999999998 5555667899999754322    1111122234


Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCe
Q 013717          299 AVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRF  376 (437)
Q Consensus       299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~  376 (437)
                      .+..++++++|+++++...++.|.+||........    ....+...+..+.++++  ++++...++.|.+|+.....  
T Consensus       151 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~----~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~--  224 (270)
T 1rwi_B          151 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV----LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT--  224 (270)
T ss_dssp             SCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEE----CCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC--
T ss_pred             CceeEEEeCCCCEEEEECCCCEEEEEecCCCceEe----ecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc--
Confidence            67889999999977777778899999987653211    11122245667777654  55555668899999987643  


Q ss_pred             eeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCC
Q 013717          377 GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPN  426 (437)
Q Consensus       377 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  426 (437)
                       .......+...+.++++.+++.     ++++...++.|+++++..++..
T Consensus       225 -~~~~~~~~~~~p~~i~~~~~g~-----l~v~~~~~~~v~~~~~~~~~~~  268 (270)
T 1rwi_B          225 -STVLPFTGLNTPLAVAVDSDRT-----VYVADRGNDRVVKLTSLEHHHH  268 (270)
T ss_dssp             -CEECCCCSCSCEEEEEECTTCC-----EEEEEGGGTEEEEECCCGGGSC
T ss_pred             -ceeeccCCCCCceeEEECCCCC-----EEEEECCCCEEEEEcCCCcccc
Confidence             2222223346789999999873     7888889999999999887654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.58  E-value=1.1e-10  Score=101.87  Aligned_cols=273  Identities=10%  Similarity=0.038  Sum_probs=173.4

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEE-ecCCeEEEEeCC
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTA-HQDCKIRVWQLT  170 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~-~~dg~i~iwd~~  170 (437)
                      .+...+.+++++  |+++++...+ .|.+||.. +.......    ..+...+.++++.++. ++.+ ..++.|..|+..
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPL----PTPDAKVMCLTISSDGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEC----SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecC----CcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence            556789999998  6666655556 99999988 54433221    1245778999998665 5544 447889999876


Q ss_pred             CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEE-
Q 013717          171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLES-  247 (437)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~-  247 (437)
                       ++. .... +                           ......+.++++++  .++++...++.|..||. +++.... 
T Consensus        87 -g~~-~~~~-~---------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~  135 (299)
T 2z2n_A           87 -GII-KEYT-L---------------------------PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYE  135 (299)
T ss_dssp             -SCE-EEEE-C---------------------------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEE
T ss_pred             -CcE-EEEe-C---------------------------CCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEec
Confidence             321 1110 0                           01345678899987  44444456789999998 5554332 


Q ss_pred             eecccccEEEEEEecCCeEEE-EeCCCeEEEecCCCCcccceeeE-EeeCccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717          248 IKAHEDAVNAVAVSAGGTVYT-GSADRKIRVWAKPFNEKRHALIA-TLEKHKSAVNALALSDDGTVLFSGACDRSILVWD  325 (437)
Q Consensus       248 ~~~~~~~v~~~~~~~~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (437)
                      .......+..+++.+++.+.. ...++.|..||. ...    ... ........+..++++++|+++++...++.|.+||
T Consensus       136 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~----~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~  210 (299)
T 2z2n_A          136 LPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGD----ITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRIT  210 (299)
T ss_dssp             CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC----EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCc----EEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEEC
Confidence            223445789999999999544 445789999987 222    111 1233445688999999998777776788999999


Q ss_pred             CCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCce
Q 013717          326 REDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGV  403 (437)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~  403 (437)
                      . +++.. ..  ....+...+.++.++++  ++++...++.|.+||.. +. .. ...+..+...+.++++ +++.    
T Consensus       211 ~-~g~~~-~~--~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-~~-~~~~~~~~~~~~~i~~-~~g~----  278 (299)
T 2z2n_A          211 T-SGEIT-EF--KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI-IE-EYPIQIKSAEPHGICF-DGET----  278 (299)
T ss_dssp             T-TCCEE-EE--ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE-EE-EEECSSSSCCEEEEEE-CSSC----
T ss_pred             C-CCcEE-EE--ECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc-eE-EEeCCCCCCccceEEe-cCCC----
Confidence            8 54421 11  12334456777777644  44544467889999984 32 11 1223345567999999 6653    


Q ss_pred             EEEEEecCCCcEEEEeeccC
Q 013717          404 VSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       404 ~~l~s~~~dg~i~iw~~~~~  423 (437)
                       ++++.. .+.|..++.+..
T Consensus       279 -l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          279 -IWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             -EEEEET-TTEEEEEEEC--
T ss_pred             -EEEEec-CCcEEEEEcCcc
Confidence             444444 567777777654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.58  E-value=1.1e-11  Score=117.13  Aligned_cols=271  Identities=11%  Similarity=0.108  Sum_probs=177.7

Q ss_pred             CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCC--CCcccccccccC
Q 013717          108 HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLT--PTKHHKLKTTLP  182 (437)
Q Consensus       108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~--~~~~~~~~~~~~  182 (437)
                      +.++++...+ .|.++|..++  +.+..+.    ....+..+.|++++  +++++.|+.|.+||+.  +.+....+.   
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~--~v~~~i~----~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~---  237 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTY--EIKTVLD----TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK---  237 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTC--CEEEEEE----CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE---
T ss_pred             ceEEEEeCCCCeEEEEECCCC--eEEEEEe----CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe---
Confidence            3455555566 9999999985  3344442    23456789999775  7888899999999995  444332221   


Q ss_pred             ccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC----C--CeEEEEE-CCCcEEEEECCCcceEEEeecc----
Q 013717          183 TVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN----N--GLIYSVS-WDKSLKIWRASDLRCLESIKAH----  251 (437)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~----  251 (437)
                                                  .......++++    |  ++++++. .+++|.++|..+.+.+..+...    
T Consensus       238 ----------------------------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~  289 (567)
T 1qks_A          238 ----------------------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY  289 (567)
T ss_dssp             ----------------------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT
T ss_pred             ----------------------------cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccc
Confidence                                        22345688888    4  5666655 5699999999999998877521    


Q ss_pred             -------cccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcE
Q 013717          252 -------EDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSI  321 (437)
Q Consensus       252 -------~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i  321 (437)
                             ...+..+..++++.  ++....+|.|.++|......  ..+..+. .......+.|+|+|++++++. .++.|
T Consensus       290 ~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~--~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V  366 (567)
T 1qks_A          290 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN--LKTTEIS-AERFLHDGGLDGSHRYFITAANARNKL  366 (567)
T ss_dssp             TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE--EEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEE
T ss_pred             ccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc--ceeeeee-ccccccCceECCCCCEEEEEeCCCCeE
Confidence                   22678888888766  55666779999998764321  1122222 344577899999999887765 57899


Q ss_pred             EEEECCCCccceEEee-eecccccceEEE-EeeCC-EEEEEe-CCCcEEEeeCCCCC----CeeeeeeecCCCCCeeEEE
Q 013717          322 LVWDREDSANHMVVTG-ALRGHGKAILCL-INVAG-LLMSGS-ADRTVRIWQRGSDG----RFGCLAVLEGHTKPVKSLT  393 (437)
Q Consensus       322 ~i~d~~~~~~~~~~~~-~~~~~~~~i~~~-~~~~~-~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~h~~~v~~l~  393 (437)
                      .++|+.+++....... ....|.+.-..+ ...+. +++++. .++.|.++|....+    .++.+.++......-..|.
T Consensus       367 ~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~  446 (567)
T 1qks_A          367 VVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIK  446 (567)
T ss_dssp             EEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE
T ss_pred             EEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEE
Confidence            9999998764333221 122344323233 33323 444543 46899999998733    1556777765544434567


Q ss_pred             EEccCCCCceEEEEEecC-------CCcEEEEeeccC
Q 013717          394 AVTEEGQNGVVSVFSGSL-------DGEIRAWQVSVS  423 (437)
Q Consensus       394 ~~~~~~~~~~~~l~s~~~-------dg~i~iw~~~~~  423 (437)
                      .+|++.     +|.....       .+.|.++|+.+.
T Consensus       447 ~~p~~~-----~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          447 THPNSQ-----YLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             CCTTCS-----EEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             eCCCCC-----eEEEecCCCCCcccCceEEEEECCcc
Confidence            888875     4444331       459999999876

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.58  E-value=4.4e-12  Score=124.93  Aligned_cols=240  Identities=10%  Similarity=0.067  Sum_probs=157.9

Q ss_pred             CCcccEEEEEEeCCe--EEEEecC-C----eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717          140 SSSGSVKSVTFCDGK--IFTAHQD-C----KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG  212 (437)
Q Consensus       140 ~h~~~v~~l~~~~~~--l~s~~~d-g----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (437)
                      +|...+..++|+|++  |+.+..+ |    .|++||+.+++......                               ..
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-------------------------------~~  170 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-------------------------------ER  170 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-------------------------------EE
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-------------------------------cC
Confidence            455678999999876  5554433 3    89999999886433211                               11


Q ss_pred             CcEEEEEeCC--CeEEEEECCCc----------------EEEEECCCcce--EEEee--cccccEEEEEEecCCe-EEEE
Q 013717          213 DAVTGLAVNN--GLIYSVSWDKS----------------LKIWRASDLRC--LESIK--AHEDAVNAVAVSAGGT-VYTG  269 (437)
Q Consensus       213 ~~v~~~~~~~--~~l~~~~~dg~----------------i~iwd~~~~~~--~~~~~--~~~~~v~~~~~~~~~~-l~~~  269 (437)
                      ..+..++|+|  +.|+.+..++.                |++|++.+++.  ...+.  .+...+..+.|+|||+ |+.+
T Consensus       171 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~  250 (710)
T 2xdw_A          171 VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (710)
T ss_dssp             ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEE
Confidence            1255788987  78888887765                99999988762  22222  2455688999999998 6665


Q ss_pred             eC-----CCeEEEecCCC------CcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC----CcEEEEECCCCcc-ce
Q 013717          270 SA-----DRKIRVWAKPF------NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD----RSILVWDREDSAN-HM  333 (437)
Q Consensus       270 ~~-----dg~v~iwd~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~-~~  333 (437)
                      +.     +..|.+||+..      ...   ....+..+...+.. .|+|+|+.|+..+.+    +.|.+||+.++.. ..
T Consensus       251 ~~~~~~~~~~l~~~d~~~~~~~~~~~~---~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~  326 (710)
T 2xdw_A          251 IREGCDPVNRLWYCDLQQESNGITGIL---KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKW  326 (710)
T ss_dssp             EECSSSSCCEEEEEEGGGSSSSSCSSC---CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGC
T ss_pred             EEccCCCccEEEEEECcccccccCCcc---ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccc
Confidence            54     57899999864      211   23334445555544 488899887766553    3699999987642 11


Q ss_pred             EEeeeecccc--cceEEEEee-CC-EEEEEeCCCc--EEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEE
Q 013717          334 VVTGALRGHG--KAILCLINV-AG-LLMSGSADRT--VRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVF  407 (437)
Q Consensus       334 ~~~~~~~~~~--~~i~~~~~~-~~-~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~  407 (437)
                      ..   +..|.  ..+..+.+. ++ ++++...|+.  |++|++.+++   .+..+..+.+.|..+.++|+++.    +++
T Consensus       327 ~~---l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~---~~~~l~~~~~~v~~~~~s~d~~~----l~~  396 (710)
T 2xdw_A          327 KV---LVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA---LLKIFPLEVGSVVGYSGQKKDTE----IFY  396 (710)
T ss_dssp             EE---EECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC---EEEEECCCSSEEEEEECCTTCSE----EEE
T ss_pred             ee---ccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC---EEEecCCCCceEEEEecCCCCCE----EEE
Confidence            11   12232  256667776 44 7777777874  5667775555   55667777778889999987653    454


Q ss_pred             Eec---CCCcEEEEeeccCC
Q 013717          408 SGS---LDGEIRAWQVSVSC  424 (437)
Q Consensus       408 s~~---~dg~i~iw~~~~~~  424 (437)
                      +.+   ..+.|++||+.+++
T Consensus       397 ~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          397 QFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEECSSCCCEEEEEETTSSS
T ss_pred             EEeCCCCCCEEEEEECCCCc
Confidence            443   35789999998776

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.58  E-value=9.9e-13  Score=129.16  Aligned_cols=274  Identities=9%  Similarity=0.029  Sum_probs=168.5

Q ss_pred             EeeCCEEEEEecC------eEEEEeCCCCceeeeecccc-CCCCcccEEEEEEeCCe--EE-----EEecCCeEEEEeCC
Q 013717          105 AVHHNFLYAASSH------EINVYDRTGTTWTSINTFND-NDSSSGSVKSVTFCDGK--IF-----TAHQDCKIRVWQLT  170 (437)
Q Consensus       105 ~~~~~~l~s~~~d------~v~vwd~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~--l~-----s~~~dg~i~iwd~~  170 (437)
                      ...|++++....+      .|.+.+...+..+.+..... ..+|...+..++|+|++  |+     .|+.+..|++||+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            3457777665542      24444544544444433221 13566789999999876  54     23345689999999


Q ss_pred             CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCc-------------EE
Q 013717          171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKS-------------LK  235 (437)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~-------------i~  235 (437)
                      +++.... ..+                             .......++|+|  +.|+.++.|..             |+
T Consensus       156 tg~~~~~-~~~-----------------------------~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~  205 (695)
T 2bkl_A          156 SGEWSKV-DVI-----------------------------EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIR  205 (695)
T ss_dssp             TCCBCSS-CCB-----------------------------SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEE
T ss_pred             CCCCcCC-ccc-----------------------------CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEE
Confidence            8874310 000                             111115678888  68888888776             99


Q ss_pred             EEECCCcc----eEEEeecccccEEEEEEecCCe-EEEEeCCC----eEEEecCCCCcccceeeEEeeCccccEEEEEEc
Q 013717          236 IWRASDLR----CLESIKAHEDAVNAVAVSAGGT-VYTGSADR----KIRVWAKPFNEKRHALIATLEKHKSAVNALALS  306 (437)
Q Consensus       236 iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~  306 (437)
                      +|++.+++    .+.....+...+..+.|+|||+ |+.++.++    .|.+||....  .   ...+..+...+....+ 
T Consensus       206 ~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~--~---~~~l~~~~~~~~~~~~-  279 (695)
T 2bkl_A          206 YHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK--D---FRLLVKGVGAKYEVHA-  279 (695)
T ss_dssp             EEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS--S---CEEEEECSSCCEEEEE-
T ss_pred             EEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC--c---eEEeecCCCceEEEEe-
Confidence            99998876    3333334556789999999999 77766655    6666654322  1   2233334445555556 


Q ss_pred             cCCCEEEEEe---CCCcEEEEECCCCcc--ceEEeeeeccc-ccceEEEEeeCC-EEEEEeCCCcEEEeeCCC-CCCeee
Q 013717          307 DDGTVLFSGA---CDRSILVWDREDSAN--HMVVTGALRGH-GKAILCLINVAG-LLMSGSADRTVRIWQRGS-DGRFGC  378 (437)
Q Consensus       307 ~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~~~~-~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~  378 (437)
                      ++|.+++...   .++.|.+||+.++..  ...+   ...+ ...+..+.+.++ ++++...|+..+||.+.. ++   .
T Consensus       280 ~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l---~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~---~  353 (695)
T 2bkl_A          280 WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEI---VPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGK---P  353 (695)
T ss_dssp             ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEE---ECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCC---E
T ss_pred             cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEE---ecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCC---e
Confidence            5666444443   258899999977642  1222   1222 345666777665 777888899888886652 33   4


Q ss_pred             eeeecCC-CCCeeEEEEEccCCCCceEEEEEec---CCCcEEEEeeccCC
Q 013717          379 LAVLEGH-TKPVKSLTAVTEEGQNGVVSVFSGS---LDGEIRAWQVSVSC  424 (437)
Q Consensus       379 ~~~~~~h-~~~v~~l~~~~~~~~~~~~~l~s~~---~dg~i~iw~~~~~~  424 (437)
                      ...+..+ .+.|..+++++++..    ++++.+   ..++|++||+.+++
T Consensus       354 ~~~l~~~~~~~v~~~~~s~d~~~----l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          354 VRTVQLPGVGAASNLMGLEDLDD----AYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEECCCSSSSEECCCBSCTTCSE----EEEEEEETTEEEEEEEEETTTCC
T ss_pred             eEEecCCCCeEEEEeecCCCCCE----EEEEEcCCCCCCEEEEEECCCCc
Confidence            4555544 567888888887642    444443   35789999998765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.56  E-value=2.4e-11  Score=114.95  Aligned_cols=326  Identities=11%  Similarity=0.049  Sum_probs=198.6

Q ss_pred             cccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCc
Q 013717           66 PSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSS  142 (437)
Q Consensus        66 ~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~  142 (437)
                      |....+++...++.+.++|..... .+..+.....+..++|+  |+++++++.+ .|.+||+.....+.+..+.    ..
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~-v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~----~G  239 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYE-IKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK----IG  239 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCC-EEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE----CC
T ss_pred             CCceEEEEeCCCCeEEEEECCCCe-EEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe----cC
Confidence            334456667788999999987643 44444333356788998  8999999988 9999999621134444442    23


Q ss_pred             ccEEEEEEe----CCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC-CCc
Q 013717          143 GSVKSVTFC----DGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH-GDA  214 (437)
Q Consensus       143 ~~v~~l~~~----~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  214 (437)
                      .....++|+    +++   +++.-.+++|.++|..+.+....+........                    ....| ...
T Consensus       240 ~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~--------------------~~~~~p~~r  299 (567)
T 1qks_A          240 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYD--------------------EQEYHPEPR  299 (567)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTT--------------------TCCEESCCC
T ss_pred             CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccc--------------------cccccCCCc
Confidence            356799999    354   44555679999999888765544331100000                    00002 225


Q ss_pred             EEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEee-cccccEEEEEEecCCe-EE-EEeCCCeEEEecCCCCcccce
Q 013717          215 VTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGGT-VY-TGSADRKIRVWAKPFNEKRHA  288 (437)
Q Consensus       215 v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-l~-~~~~dg~v~iwd~~~~~~~~~  288 (437)
                      +..+..++   .+++....+|.|.++|....+.+.... ........+.|+|+++ ++ +...++.|.++|+.+..    
T Consensus       300 va~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k----  375 (567)
T 1qks_A          300 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK----  375 (567)
T ss_dssp             EEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE----
T ss_pred             eEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc----
Confidence            66666655   456666778999999998764332221 2345677889999998 44 45568999999987553    


Q ss_pred             eeEEeeC-----ccccEEEEEEccCCCEEE-EEe-CCCcEEEEECCCCccc---eEEeeeecccccce--EEEEeeCCEE
Q 013717          289 LIATLEK-----HKSAVNALALSDDGTVLF-SGA-CDRSILVWDREDSANH---MVVTGALRGHGKAI--LCLINVAGLL  356 (437)
Q Consensus       289 ~~~~~~~-----~~~~i~~~~~~~~~~~l~-~~~-~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~i--~~~~~~~~~l  356 (437)
                      .+..+.-     |.+.-..+ ++|++..++ ++. .++.|.++|....+..   +.....+......-  ....+++.++
T Consensus       376 l~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l  454 (567)
T 1qks_A          376 LVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYL  454 (567)
T ss_dssp             EEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEE
T ss_pred             EEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeE
Confidence            3333322     32212122 578755444 443 4689999999863211   22333333322222  3334455577


Q ss_pred             EEEeC-------CCcEEEeeCCCCCC---eeeeeeec--------CCCCCeeEEEEEccCCCCceEEEEEec----CCCc
Q 013717          357 MSGSA-------DRTVRIWQRGSDGR---FGCLAVLE--------GHTKPVKSLTAVTEEGQNGVVSVFSGS----LDGE  414 (437)
Q Consensus       357 ~~~~~-------dg~i~iwd~~~~~~---~~~~~~~~--------~h~~~v~~l~~~~~~~~~~~~~l~s~~----~dg~  414 (437)
                      .+...       .+.|.+||+.+.+.   ...+..+.        .-...+..+.|++++..    ++++..    .++.
T Consensus       455 ~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~----~~~s~~~~~~~~~~  530 (567)
T 1qks_A          455 YVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTE----VWFSVWNGKDQESA  530 (567)
T ss_dssp             EEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSE----EEEEEECCTTSCCE
T ss_pred             EEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCE----EEEEeecCCCCCCc
Confidence            76653       35899999987510   11222221        12357889999999874    566643    4799


Q ss_pred             EEEEeeccCCC
Q 013717          415 IRAWQVSVSCP  425 (437)
Q Consensus       415 i~iw~~~~~~~  425 (437)
                      |.++|.++.+.
T Consensus       531 i~v~D~~t~~~  541 (567)
T 1qks_A          531 LVVVDDKTLEL  541 (567)
T ss_dssp             EEEEETTTTEE
T ss_pred             EEEEECCCceE
Confidence            99999888764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.55  E-value=4.4e-12  Score=109.21  Aligned_cols=203  Identities=11%  Similarity=0.061  Sum_probs=140.7

Q ss_pred             CCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC-CcEEEEEeCC--CeEEE
Q 013717          152 DGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG-DAVTGLAVNN--GLIYS  227 (437)
Q Consensus       152 ~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~~l~~  227 (437)
                      |+. |++++.|+.|.+||.++++....+.                              .+. ..+.++.+.+  ++++ 
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~------------------------------~~~~~~~~~~~~~pdG~ilv-   52 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP------------------------------LEKGWECNSVAATKAGEILF-   52 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEE------------------------------CCTTCCCCEEEECTTSCEEE-
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeC------------------------------CCccCCCcCeEECCCCCEEE-
Confidence            555 8888999999999998887654443                              122 3567778877  5555 


Q ss_pred             EECCCcEEEEECCCcceEEEeecc-cccEEEEEEecCCe-EEEEeC-CCeEEEecCCCCcccceeeEEee------Cccc
Q 013717          228 VSWDKSLKIWRASDLRCLESIKAH-EDAVNAVAVSAGGT-VYTGSA-DRKIRVWAKPFNEKRHALIATLE------KHKS  298 (437)
Q Consensus       228 ~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~-l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~------~~~~  298 (437)
                       +.++.|..||. +++.+..+... ...+.++.+.++|. +++.+. ++.|..+|.. +    +.+..+.      .+..
T Consensus        53 -s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-G----k~l~~~~~~~~~~~~~~  125 (276)
T 3no2_A           53 -SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-G----EVLSKTEFETGIERPHA  125 (276)
T ss_dssp             -ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-S----CEEEEEEECCSCSSGGG
T ss_pred             -eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-C----CEEEEEeccCCCCcccc
Confidence             56788999998 89999998854 35788999999999 666666 7778777653 2    2333322      2223


Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeee
Q 013717          299 AVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGC  378 (437)
Q Consensus       299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  378 (437)
                      ....+++.++|+++++...++.|.+||.+ ++....+...  ... .-.....++++++++..++.|..+|..+++   .
T Consensus       126 ~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~--~~~-~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~---~  198 (276)
T 3no2_A          126 QFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS--GTP-FSSAFLDNGDCLVACGDAHCFVQLNLESNR---I  198 (276)
T ss_dssp             SCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS--SCC-CEEEECTTSCEEEECBTTSEEEEECTTTCC---E
T ss_pred             cccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC--CCc-cceeEcCCCCEEEEeCCCCeEEEEeCcCCc---E
Confidence            45567789999999999999999999987 7655544321  111 112233456688888888899999999877   4


Q ss_pred             eeeecCCC------CCeeEEEEEccCC
Q 013717          379 LAVLEGHT------KPVKSLTAVTEEG  399 (437)
Q Consensus       379 ~~~~~~h~------~~v~~l~~~~~~~  399 (437)
                      +.++..+.      ..+..++..+++.
T Consensus       199 ~w~~~~~~~~~~~l~~~~~~~~~~~G~  225 (276)
T 3no2_A          199 VRRVNANDIEGVQLFFVAQLFPLQNGG  225 (276)
T ss_dssp             EEEEEGGGSBSCCCSEEEEEEECTTSC
T ss_pred             EEEecCCCCCCccccccccceEcCCCC
Confidence            55543221      2367777777764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.54  E-value=8.8e-12  Score=108.98  Aligned_cols=231  Identities=13%  Similarity=0.106  Sum_probs=147.7

Q ss_pred             CcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEE
Q 013717          141 SSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTG  217 (437)
Q Consensus       141 h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  217 (437)
                      +.....+++|+++.   ++++..++.|..|+..++  ...+                              ..+...+.+
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~------------------------------~~~~~~~~~   73 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE------------------------------MHPSHHQNG   73 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE------------------------------ESSCSSEEE
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE------------------------------ECCCCCcce
Confidence            45667899999553   677788999999998865  2111                              125567889


Q ss_pred             EEeCC--CeEEEEECCCcEEEEECCCcceEEEeecc----cccEEEEEEecCCeEEE-----Ee-------------CCC
Q 013717          218 LAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAH----EDAVNAVAVSAGGTVYT-----GS-------------ADR  273 (437)
Q Consensus       218 ~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~l~~-----~~-------------~dg  273 (437)
                      +++++  +++++...++.|.+||..+++........    ...+..++++|+|.++.     |+             ..+
T Consensus        74 l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~  153 (296)
T 3e5z_A           74 HCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGR  153 (296)
T ss_dssp             EEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSC
T ss_pred             eeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCc
Confidence            99988  44444445689999999888765443221    23467899999999444     33             134


Q ss_pred             eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECC-CCccceEEeeeecccccceEEEEee
Q 013717          274 KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE-DSANHMVVTGALRGHGKAILCLINV  352 (437)
Q Consensus       274 ~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~i~~~~~~  352 (437)
                      .|..++.. +    . ...+..+...+..++|+|+|+.+++.+.++.|++|++. +++... ....+..+...+..+.++
T Consensus       154 ~l~~~~~~-g----~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~-~~~~~~~~~~~p~~i~~d  226 (296)
T 3e5z_A          154 WVFRLAPD-G----T-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEY-QGVHFTVEPGKTDGLRVD  226 (296)
T ss_dssp             EEEEECTT-S----C-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEE-EEEEECCSSSCCCSEEEB
T ss_pred             EEEEECCC-C----C-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcC-CCeEeeCCCCCCCeEEEC
Confidence            56666543 1    1 23334456678899999999988777778999999997 332200 011112233334445555


Q ss_pred             --CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEE-ccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          353 --AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAV-TEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       353 --~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                        ++++++.  ++.|.+||.. ++   .+..+..+.. +++++|. +++.     .|+.++.+ .+.-++.++.
T Consensus       227 ~~G~l~v~~--~~~v~~~~~~-g~---~~~~~~~~~~-~~~~~f~~~d~~-----~L~v~t~~-~l~~~~~~~~  287 (296)
T 3e5z_A          227 AGGLIWASA--GDGVHVLTPD-GD---ELGRVLTPQT-TSNLCFGGPEGR-----TLYMTVST-EFWSIETNVR  287 (296)
T ss_dssp             TTSCEEEEE--TTEEEEECTT-SC---EEEEEECSSC-CCEEEEESTTSC-----EEEEEETT-EEEEEECSCC
T ss_pred             CCCCEEEEc--CCeEEEECCC-CC---EEEEEECCCC-ceeEEEECCCCC-----EEEEEcCC-eEEEEEcccc
Confidence              4444444  7889999986 44   5666776766 9999996 5553     56666665 3333344443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.53  E-value=4e-11  Score=108.68  Aligned_cols=301  Identities=8%  Similarity=0.044  Sum_probs=182.1

Q ss_pred             ccccccCCCceeEEecCCCcceeeeec-Cc--------cCCe-EEEEeeCCEEEEEecC-eEEEEeCCCCceeeeecccc
Q 013717           69 PSLQKLSPDETINFSSASHLCINSVQL-GH--------KLPI-GCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFND  137 (437)
Q Consensus        69 ~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h--------~~~V-~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~  137 (437)
                      ..+...+.++.+..++.......-..- +.        ...+ ......+..++.++.+ .|..+|.++++..-....  
T Consensus        54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~--  131 (376)
T 3q7m_A           54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV--  131 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC--
T ss_pred             CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC--
Confidence            344555667888888876544332222 21        2233 3344458888888888 999999998754322222  


Q ss_pred             CCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEE
Q 013717          138 NDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTG  217 (437)
Q Consensus       138 ~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  217 (437)
                         ...........++.++.++.++.|..+|..+++...........                     ........    
T Consensus       132 ---~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~---------------------~~~~~~~~----  183 (376)
T 3q7m_A          132 ---AGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPS---------------------LSLRGESA----  183 (376)
T ss_dssp             ---SSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC--------------------------CCCCC----
T ss_pred             ---CCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCc---------------------eeecCCCC----
Confidence               11111122344677888999999999999988755433211000                     00000111    


Q ss_pred             EEeCCCeEEEEECCCcEEEEECCCcceEEEeeccccc----------EEEEEEecCCeEEEEeCCCeEEEecCCCCcccc
Q 013717          218 LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDA----------VNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRH  287 (437)
Q Consensus       218 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~  287 (437)
                      .......++.+..++.|..+|..+++.+.........          +.......++.+++++.++.+..+|..++..  
T Consensus       184 ~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~--  261 (376)
T 3q7m_A          184 PTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI--  261 (376)
T ss_dssp             CEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE--
T ss_pred             cEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE--
Confidence            1222477888888999999999999988776522110          1111111256688888999999999876542  


Q ss_pred             eeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEE
Q 013717          288 ALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRI  367 (437)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~i  367 (437)
                        +....  ......+..  ++..++.++.++.|..+|..+++.......   ............++.|+.++.+|.|++
T Consensus       262 --~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~~~~~l~v~~~~g~l~~  332 (376)
T 3q7m_A          262 --MWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSD---LLHRLLTSPVLYNGNLVVGDSEGYLHW  332 (376)
T ss_dssp             --EEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECT---TTTSCCCCCEEETTEEEEECTTSEEEE
T ss_pred             --Eeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecc---cCCCcccCCEEECCEEEEEeCCCeEEE
Confidence              22222  122334443  366788888999999999998875443320   111222333445778999999999999


Q ss_pred             eeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717          368 WQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       368 wd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~  419 (437)
                      +|..+++   .+.........+.......++      .|+.++.||.|..|+
T Consensus       333 ~d~~tG~---~~~~~~~~~~~~~~~~~~~~~------~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          333 INVEDGR---FVAQQKVDSSGFQTEPVAADG------KLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EETTTCC---EEEEEECCTTCBCSCCEEETT------EEEEEBTTSCEEEEE
T ss_pred             EECCCCc---EEEEEecCCCcceeCCEEECC------EEEEEeCCCEEEEEe
Confidence            9999887   444444433333322222233      588889999999986

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.50  E-value=4.7e-10  Score=97.88  Aligned_cols=269  Identities=7%  Similarity=0.001  Sum_probs=169.1

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTF  135 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~  135 (437)
                      ..+.+.+.....++...++.|..++.. .......+ .+...+.+++++  ++++++...+ .|..||.+. ...... +
T Consensus        18 ~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~-~   94 (299)
T 2z2n_A           18 YGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG-IIKEYT-L   94 (299)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEE-C
T ss_pred             cceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cEEEEe-C
Confidence            355666777766666667889999887 33322233 456789999997  6766666656 899999873 232221 1


Q ss_pred             ccCCCCcccEEEEEEeCCe-EEE-EecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717          136 NDNDSSSGSVKSVTFCDGK-IFT-AHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD  213 (437)
Q Consensus       136 ~~~~~h~~~v~~l~~~~~~-l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (437)
                         ......+..+++.++. ++. ...++.|..||. +++......                             .....
T Consensus        95 ---~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~-----------------------------~~~~~  141 (299)
T 2z2n_A           95 ---PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYEL-----------------------------PNKGS  141 (299)
T ss_dssp             ---SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC-----------------------------SSTTC
T ss_pred             ---CCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecC-----------------------------CCCCC
Confidence               1245678999998654 444 445789999998 443221100                             11345


Q ss_pred             cEEEEEeCC-CeEEE-EECCCcEEEEECCCcceEEE-eecccccEEEEEEecCCeEEEE-eCCCeEEEecCCCCccccee
Q 013717          214 AVTGLAVNN-GLIYS-VSWDKSLKIWRASDLRCLES-IKAHEDAVNAVAVSAGGTVYTG-SADRKIRVWAKPFNEKRHAL  289 (437)
Q Consensus       214 ~v~~~~~~~-~~l~~-~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~  289 (437)
                      .+.++++++ ..++. ...++.|..||. +++.... +......+..+++.+++.+..+ ..++.|.+||. .+..   .
T Consensus       142 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~---~  216 (299)
T 2z2n_A          142 YPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI---T  216 (299)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE---E
T ss_pred             CCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE---E
Confidence            678899987 44444 445689999998 6665432 2234456889999999985544 45789999987 3321   1


Q ss_pred             eEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEee
Q 013717          290 IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQ  369 (437)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd  369 (437)
                      ..........+.+++++++|+++++...++.|.+||.. ++ ...+  ....+...+.++.+....|..+...+.|..++
T Consensus       217 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-~~~~--~~~~~~~~~~~i~~~~g~l~v~~~~~~l~~~~  292 (299)
T 2z2n_A          217 EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI-IEEY--PIQIKSAEPHGICFDGETIWFAMECDKIGKLT  292 (299)
T ss_dssp             EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE-EEEE--ECSSSSCCEEEEEECSSCEEEEETTTEEEEEE
T ss_pred             EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc-eEEE--eCCCCCCccceEEecCCCEEEEecCCcEEEEE
Confidence            11223345678999999999877766678899999983 32 1111  12233455666666333455454466787787


Q ss_pred             CCCC
Q 013717          370 RGSD  373 (437)
Q Consensus       370 ~~~~  373 (437)
                      ..+.
T Consensus       293 ~~~~  296 (299)
T 2z2n_A          293 LIKD  296 (299)
T ss_dssp             EC--
T ss_pred             cCcc
Confidence            7653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.50  E-value=1.7e-12  Score=115.73  Aligned_cols=172  Identities=12%  Similarity=0.049  Sum_probs=126.6

Q ss_pred             CeEEEEee--CCEEEEEecCeEEEEeCCCCc---------eeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEe
Q 013717          100 PIGCIAVH--HNFLYAASSHEINVYDRTGTT---------WTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQ  168 (437)
Q Consensus       100 ~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~---------~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd  168 (437)
                      +++.|+++  ..++++|+.+.+++|+++..+         .+....    ..+.. |..|+|.++.|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~----~~lp~-V~~l~fd~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWE----KEIPD-VIFVCFHGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEE----EECTT-EEEEEEETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEE----eeCCC-eeEEEECCCEEEEE-cCCcEEEEE
Confidence            68899998  888999999988889976532         111111    13556 99999933336666 889999999


Q ss_pred             CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEe
Q 013717          169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESI  248 (437)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  248 (437)
                      +.+.......                              ..|...+.++.+.+..++++..||.|.+||+.+++...  
T Consensus       113 v~sl~~~~~~------------------------------~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~--  160 (388)
T 1xip_A          113 LEELSEFRTV------------------------------TSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ--  160 (388)
T ss_dssp             SSSTTCEEEE------------------------------EECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE--
T ss_pred             chhhhccCcc------------------------------ceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc--
Confidence            9876422211                              23566788887777569999999999999999887643  


Q ss_pred             ecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEe------e---CccccEEEEEEccCCCEEEE
Q 013717          249 KAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATL------E---KHKSAVNALALSDDGTVLFS  314 (437)
Q Consensus       249 ~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------~---~~~~~i~~~~~~~~~~~l~~  314 (437)
                        +...|+|++|+|+| ++.|..||.+++|+.......  ....+      .   +|...|.+|.|.+++.++++
T Consensus       161 --~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~~~~~--~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          161 --LAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRNGEME--KQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             --EEESEEEEEECSSE-EEEEETTSCEEEEEEETTEEE--EEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             --ccCCceEEEEcCCc-eEEEEcCCcEEEEcCCCcccc--ccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence              44689999999999 788999999999976543210  02233      2   36788999999999988886

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.50  E-value=2e-12  Score=118.06  Aligned_cols=226  Identities=8%  Similarity=-0.045  Sum_probs=135.8

Q ss_pred             eeeccccccccccCC---CceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeec
Q 013717           62 LQTLPSVPSLQKLSP---DETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINT  134 (437)
Q Consensus        62 ~~~~~~~~~~~s~s~---dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~  134 (437)
                      +.++|....++....   +..|.+|+..... ..... ++......+.|+  |++|+.++.+ .|.+||+.+++...+..
T Consensus        41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~  119 (396)
T 3c5m_A           41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ-AVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYT  119 (396)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTTE-EEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             CcCCCCCCEEEEEEecCCCceEEEEECCCCc-EEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEe
Confidence            456666666554432   3467777775533 23333 443334446777  8899999888 99999999875554443


Q ss_pred             cccCCCCcccEEE---E----------------EEeCCe--EEEE-----ecCCeEEEEeCCCCcccccccccCccccce
Q 013717          135 FNDNDSSSGSVKS---V----------------TFCDGK--IFTA-----HQDCKIRVWQLTPTKHHKLKTTLPTVNDRL  188 (437)
Q Consensus       135 ~~~~~~h~~~v~~---l----------------~~~~~~--l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  188 (437)
                      .     +......   |                .++|+.  ++.+     ..+..|.+||+.+++....           
T Consensus       120 ~-----~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~-----------  183 (396)
T 3c5m_A          120 V-----DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI-----------  183 (396)
T ss_dssp             C-----CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE-----------
T ss_pred             c-----ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee-----------
Confidence            2     2221111   2                223332  2221     3455777788776543221           


Q ss_pred             eeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECC------CcEEEEECCCcceEEEeecc-cccEEEE
Q 013717          189 LRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWD------KSLKIWRASDLRCLESIKAH-EDAVNAV  258 (437)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~-~~~v~~~  258 (437)
                                          ..+...+..+.|+|   ..|+..+.+      ..|.+||+..++........ ...+..+
T Consensus       184 --------------------~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~  243 (396)
T 3c5m_A          184 --------------------HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHE  243 (396)
T ss_dssp             --------------------EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEE
T ss_pred             --------------------ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccce
Confidence                                12556678888877   345555543      46889998766543332211 2358889


Q ss_pred             EEecCCe-EEEEeCC-----CeEEEecCCCCcccceeeEEeeCccccEEEEEEcc-CCCEEEEEe---------------
Q 013717          259 AVSAGGT-VYTGSAD-----RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD-DGTVLFSGA---------------  316 (437)
Q Consensus       259 ~~~~~~~-l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~---------------  316 (437)
                      +|+|+|+ |+.++.+     +.|.+||+..+..  ..+..+.   . .. +.|+| ||++++.++               
T Consensus       244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~---~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~  316 (396)
T 3c5m_A          244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN--EEVMVMP---P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNI  316 (396)
T ss_dssp             EECTTSSCEEEEEEETTTCCEEEEEECTTTCCE--EEEEECC---S-EE-EEEECSSSSEEEEEECCC----------CC
T ss_pred             EECCCCCEEEEEecCCCCccceEEEEECCCCCe--EEeeeCC---C-CC-CCccCCCCceEEEecCCcceeecccccccc
Confidence            9999998 7776544     4599999865431  1222222   1 23 88999 999888754               


Q ss_pred             -CCCcEEEEECCCCcc
Q 013717          317 -CDRSILVWDREDSAN  331 (437)
Q Consensus       317 -~dg~i~i~d~~~~~~  331 (437)
                       .++.|++||+.+++.
T Consensus       317 ~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          317 ENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             CCCCEEEEEETTTTBC
T ss_pred             CCCCcEEEEecccCce
Confidence             347899999987653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.50  E-value=4.4e-11  Score=107.05  Aligned_cols=246  Identities=10%  Similarity=0.065  Sum_probs=152.5

Q ss_pred             CCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEec----C--eEEEEeCCCCceeeeeccccCCCCcccEEE
Q 013717           76 PDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASS----H--EINVYDRTGTTWTSINTFNDNDSSSGSVKS  147 (437)
Q Consensus        76 ~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~----d--~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~  147 (437)
                      .++.|.+|+.......  .+   ..+.+++|+  |++|+.++.    +  .|.+||+.+++...+..      +.. +..
T Consensus        41 ~~~~l~~~d~~~~~~~--~l---~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~------~~~-~~~  108 (347)
T 2gop_A           41 YENTIVIENLKNNARR--FI---ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE------AKN-IRS  108 (347)
T ss_dssp             EEEEEEEEETTTCCEE--EE---ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE------ESE-EEE
T ss_pred             ccceEEEEeCCCCceE--Ec---ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc------CCC-ccc
Confidence            4667888887654322  22   568889999  888887763    2  68899998865544433      223 999


Q ss_pred             EEEeCCe--EEEEecC---------------------------CeEEEEeCCCCcccccccccCccccceeeecCCCCee
Q 013717          148 VTFCDGK--IFTAHQD---------------------------CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYV  198 (437)
Q Consensus       148 l~~~~~~--l~s~~~d---------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (437)
                      +.|+|+.  |+.++.+                           ..|.+||+.+++....+.                   
T Consensus       109 ~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~-------------------  169 (347)
T 2gop_A          109 LEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE-------------------  169 (347)
T ss_dssp             EEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE-------------------
T ss_pred             eeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec-------------------
Confidence            9999765  6666532                           467888887665311111                   


Q ss_pred             EEeeccceeeecCCCcEEEEEeCC-CeEEEEECCC-------cEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEE
Q 013717          199 TVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDK-------SLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTG  269 (437)
Q Consensus       199 ~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~  269 (437)
                                 . . .+..+.|+| .+++++..++       ...||.+.+++. ..+..+ ..+..+  +|+|+ |+.+
T Consensus       170 -----------~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~  232 (347)
T 2gop_A          170 -----------K-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLY  232 (347)
T ss_dssp             -----------E-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEE
T ss_pred             -----------C-C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEE
Confidence                       1 1 456777877 4444454432       334444435443 344334 555554  99998 7776


Q ss_pred             eCC--------CeEEEecCCCCcccceeeEEeeCccccEEE-EEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeec
Q 013717          270 SAD--------RKIRVWAKPFNEKRHALIATLEKHKSAVNA-LALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALR  340 (437)
Q Consensus       270 ~~d--------g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  340 (437)
                      +.+        ..|.+||  .+    +.......+...+.. +.|+ |+ ++++++.++.+++| +.+++ ...    +.
T Consensus       233 ~~~~~~~~~~~~~l~~~d--~~----~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~-~~~----~~  298 (347)
T 2gop_A          233 GKPEKKYMSEHNKLYIYD--GK----EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE-IKP----IA  298 (347)
T ss_dssp             ECCSSSCCCSSCEEEEEC--SS----CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS-EEE----EE
T ss_pred             EccccCCccccceEEEEC--CC----ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc-eEE----Ee
Confidence            644        4678887  22    222333445667876 8999 88 88999999999999 87432 211    22


Q ss_pred             ccccceEEEEeeCCEEEEEeCCCcE-EEeeCCCCCCeeeeeeecCCCCC
Q 013717          341 GHGKAILCLINVAGLLMSGSADRTV-RIWQRGSDGRFGCLAVLEGHTKP  388 (437)
Q Consensus       341 ~~~~~i~~~~~~~~~l~~~~~dg~i-~iwd~~~~~~~~~~~~~~~h~~~  388 (437)
                      .+...+.++++++.++++++.++.. .||.+. ++    ...+..|...
T Consensus       299 ~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~-g~----~~~lt~~n~~  342 (347)
T 2gop_A          299 KGRHWIMGFDVDEIVVYLKETATRLRELFTWD-GE----EKQLTDYNDP  342 (347)
T ss_dssp             CSSSEEEEEEESSSEEEEEECSSSCCEEEEES-SS----EEECCCTTST
T ss_pred             cCCCeEEeeeeeCcEEEEEcCCCChHHheEeC-Cc----EEEeccccHh
Confidence            3466777888777666677777664 777766 32    3445555543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.50  E-value=1.7e-11  Score=105.57  Aligned_cols=232  Identities=10%  Similarity=0.036  Sum_probs=149.5

Q ss_pred             CeEEEEee--CCEEE-EEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcc
Q 013717          100 PIGCIAVH--HNFLY-AASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKH  174 (437)
Q Consensus       100 ~V~~l~~~--~~~l~-s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~  174 (437)
                      ...+++++  +++++ +...+ .|.+||..+.......     ..+...+.+|+++++. ++.+..++.|.+||......
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-----FNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ   99 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC-----CCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe-----eCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceE
Confidence            66788887  66665 43556 9999998764322211     1234567889998654 65555588999999876532


Q ss_pred             cccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeeccc
Q 013717          175 HKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHE  252 (437)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  252 (437)
                      ....                              ......+.++++++  .++++...++.|.+|+..+...........
T Consensus       100 ~~~~------------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~  149 (270)
T 1rwi_B          100 TVLP------------------------------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGL  149 (270)
T ss_dssp             EECC------------------------------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSC
T ss_pred             eeee------------------------------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccC
Confidence            1110                              01234678899987  445554567899999876654433222333


Q ss_pred             ccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCcc
Q 013717          253 DAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSAN  331 (437)
Q Consensus       253 ~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (437)
                      ..+..+++++++. +++...++.|.+||.....    ...........+..++++++|+++++...++.|.+||......
T Consensus       150 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~----~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~  225 (270)
T 1rwi_B          150 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN----QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS  225 (270)
T ss_dssp             CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC----EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred             CCceeEEEeCCCCEEEEECCCCEEEEEecCCCc----eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence            4678899999999 5555567899999876432    1111122336788999999998777777788999999865432


Q ss_pred             ceEEeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCCCCC
Q 013717          332 HMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       332 ~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~  374 (437)
                      ..    ....+...+.++.++  ++++++...++.|++|++...+
T Consensus       226 ~~----~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          226 TV----LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             EE----CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             ee----eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            11    111223456667665  4577888889999999988644

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.49  E-value=1.7e-11  Score=107.09  Aligned_cols=233  Identities=7%  Similarity=-0.003  Sum_probs=148.2

Q ss_pred             CccCCeEEEEee--CC-EEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEe-cCCeEEEEeC
Q 013717           96 GHKLPIGCIAVH--HN-FLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAH-QDCKIRVWQL  169 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~-~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~-~dg~i~iwd~  169 (437)
                      .+.....+++|+  ++ +++++..+ .|..||..++ ...   +   ..+...+.++++++++ ++.+. .++.|.+||.
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~---~---~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~   97 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSP---E---MHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE   97 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEE---E---ESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEE---E---ECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence            566678899998  66 77788777 9999999985 322   2   2356779999999765 55554 4689999999


Q ss_pred             CCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEE----EE-------------C
Q 013717          170 TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYS----VS-------------W  230 (437)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~----~~-------------~  230 (437)
                      .+++.........                          ......+.++++++  +++++    |.             .
T Consensus        98 ~~g~~~~~~~~~~--------------------------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~  151 (296)
T 3e5z_A           98 PGGEWESIADSFE--------------------------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELP  151 (296)
T ss_dssp             TTCCEEEEECEET--------------------------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSS
T ss_pred             CCCcEEEEeeccC--------------------------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCC
Confidence            7775332211100                          01123456788887  44554    22             1


Q ss_pred             CCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC
Q 013717          231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG  309 (437)
Q Consensus       231 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  309 (437)
                      .+.|..++.. ++ +..+..+......++|+|+++ +++.+.++.|.+||+............+..+...+..++++++|
T Consensus       152 ~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G  229 (296)
T 3e5z_A          152 GRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG  229 (296)
T ss_dssp             SCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS
T ss_pred             CcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC
Confidence            3456666654 44 344445566789999999998 76667789999999862211101122223345567789999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee---CCEEEEEeCCCcEEEeeCCC
Q 013717          310 TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV---AGLLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~iwd~~~  372 (437)
                      +++++.  ++.|.+||.. ++    ....+..+.. +.++.+.   ++.|++++.++ +.-++.++
T Consensus       230 ~l~v~~--~~~v~~~~~~-g~----~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~  286 (296)
T 3e5z_A          230 LIWASA--GDGVHVLTPD-GD----ELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV  286 (296)
T ss_dssp             CEEEEE--TTEEEEECTT-SC----EEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred             CEEEEc--CCeEEEECCC-CC----EEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence            866665  7889999986 33    2222333444 6667663   23788777764 44555554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.46  E-value=3.2e-11  Score=119.33  Aligned_cols=276  Identities=12%  Similarity=0.044  Sum_probs=163.0

Q ss_pred             eeCCEEEEEecC----eEEEEeC--C---CCceeeeecccc-CCCCcccEEEEEEeCCe--EEEEecC-----CeEEEEe
Q 013717          106 VHHNFLYAASSH----EINVYDR--T---GTTWTSINTFND-NDSSSGSVKSVTFCDGK--IFTAHQD-----CKIRVWQ  168 (437)
Q Consensus       106 ~~~~~l~s~~~d----~v~vwd~--~---~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~--l~s~~~d-----g~i~iwd  168 (437)
                      ..|++++....+    .-.+|-.  .   .+..+.+..... ..+|...+..+.|+|++  |+.+..+     ..|++||
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d  195 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG  195 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence            447777766533    2455544  3   333333322111 12344578899999876  5554432     3699999


Q ss_pred             CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCc--------------
Q 013717          169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKS--------------  233 (437)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~--------------  233 (437)
                      +.+++......                               +...+..++|+| +.|+.+..++.              
T Consensus       196 l~tg~~~~~~~-------------------------------~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~  244 (741)
T 1yr2_A          196 VADGKPLADEL-------------------------------KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQT  244 (741)
T ss_dssp             TTTCCEEEEEE-------------------------------EEEESCCCEESTTSEEEEEECCCC--------CCCCCE
T ss_pred             CCCCCCCCccC-------------------------------CCceeccEEEECCCEEEEEEecCcccccccccCCCCCE
Confidence            99886432100                               111123566776 56776665543              


Q ss_pred             EEEEECCCcce--EEEee--cccccEEEEEEecCCe-EEEEeCC-----CeEEEecCCCCcccceeeEEeeCccccEEEE
Q 013717          234 LKIWRASDLRC--LESIK--AHEDAVNAVAVSAGGT-VYTGSAD-----RKIRVWAKPFNEKRHALIATLEKHKSAVNAL  303 (437)
Q Consensus       234 i~iwd~~~~~~--~~~~~--~~~~~v~~~~~~~~~~-l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~  303 (437)
                      |++|++.+++.  ...+.  .+...+..+.|+|||+ |+..+.+     ..|.+||+......  ....+..+...+...
T Consensus       245 v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~--~~~~l~~~~~~~~~~  322 (741)
T 1yr2_A          245 VWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG--PVTALIPDLKAQWDF  322 (741)
T ss_dssp             EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC--CCEEEECSSSSCEEE
T ss_pred             EEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc--ccEEecCCCCceEEE
Confidence            89999977652  22222  2333588999999998 6666644     38999988643211  023333444444444


Q ss_pred             EEccCCCEEEEEeC----CCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCC-CCCCee
Q 013717          304 ALSDDGTVLFSGAC----DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRG-SDGRFG  377 (437)
Q Consensus       304 ~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~-~~~~~~  377 (437)
                      . +|+|+.|+..+.    ++.|.+||+.++.  ......+..+...+..+.+.++ ++++...|+..+||.+. .++   
T Consensus       323 ~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~---  396 (741)
T 1yr2_A          323 V-DGVGDQLWFVSGDGAPLKKIVRVDLSGST--PRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGK---  396 (741)
T ss_dssp             E-EEETTEEEEEECTTCTTCEEEEEECSSSS--CEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSC---
T ss_pred             E-eccCCEEEEEECCCCCCCEEEEEeCCCCc--cccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCC---
Confidence            3 488988887765    3459999987642  1122222334445666777666 77788889887777654 233   


Q ss_pred             eeeeecC-CCCCeeEEEEEccCCCCceEEEEEec---CCCcEEEEeeccCC
Q 013717          378 CLAVLEG-HTKPVKSLTAVTEEGQNGVVSVFSGS---LDGEIRAWQVSVSC  424 (437)
Q Consensus       378 ~~~~~~~-h~~~v~~l~~~~~~~~~~~~~l~s~~---~dg~i~iw~~~~~~  424 (437)
                      ....+.. +.+.|..+.++++++.    ++++.+   ..++|++||+.+++
T Consensus       397 ~~~~l~~~~~~~v~~~~~s~d~~~----l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          397 PAGAVSLPGIGSASGLSGRPGDRH----AYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEECBCSSSCEEEEEECCBTCSC----EEEEEEETTEEEEEEEEETTTTE
T ss_pred             ceeeccCCCCeEEEEeecCCCCCE----EEEEEcCCCCCCEEEEEECCCCc
Confidence            4445544 3567889999997753    444433   35789999987764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.45  E-value=2.8e-09  Score=93.00  Aligned_cols=271  Identities=8%  Similarity=0.029  Sum_probs=169.9

Q ss_pred             CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEe-cCCeEEEEeCC
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAH-QDCKIRVWQLT  170 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~-~dg~i~iwd~~  170 (437)
                      .....+.+++++  |++.++...+ .|.+||.. ++..... +   ..+...+.++++.++. ++.+. .++.|..||..
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~-~---~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~   91 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFE-V---PTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK   91 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE-C---SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEE-C---CCCCCcceeEEECCCCCEEEEecCCCeEEEECCC
Confidence            445678899998  6666666566 99999988 5444322 1   2344678999998655 55444 47889999987


Q ss_pred             CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEE-
Q 013717          171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLES-  247 (437)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~-  247 (437)
                       ++... .. .                           ......+.++++++  .++++...++.|..+|.. ++.... 
T Consensus        92 -g~~~~-~~-~---------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~  140 (300)
T 2qc5_A           92 -GGFTE-YP-L---------------------------PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYD  140 (300)
T ss_dssp             -SCEEE-EE-C---------------------------SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred             -CCeEE-ec-C---------------------------CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEcc
Confidence             43211 11 0                           01235678888887  444444447899999987 554422 


Q ss_pred             eecccccEEEEEEecCCeEEEE-eCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEEC
Q 013717          248 IKAHEDAVNAVAVSAGGTVYTG-SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDR  326 (437)
Q Consensus       248 ~~~~~~~v~~~~~~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (437)
                      +......+..+++.+++.+..+ ..++.|..||.. ...   ...........+..++++++|++.++....+.|.+||.
T Consensus       141 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~---~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  216 (300)
T 2qc5_A          141 LPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT-GKL---EEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT  216 (300)
T ss_dssp             CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCE---EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             CCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC-CcE---EEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence            2224567899999999995544 447889999873 221   11122234457899999999987777666778999998


Q ss_pred             CCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceE
Q 013717          327 EDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVV  404 (437)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~  404 (437)
                       +++... .  ....+...+.++..+++  ++++...++.|..||.. +. .. ...+......+.++++.+++.     
T Consensus       217 -~g~~~~-~--~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~-~~-~~~~~~~~~~~~~i~~~~~g~-----  284 (300)
T 2qc5_A          217 -TGEISE-Y--DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NT-IQ-EYQLQTENAEPHGITFGKDGS-----  284 (300)
T ss_dssp             -TCCEEE-E--ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-EE-EEECCSTTCCCCCEEECTTSC-----
T ss_pred             -CCcEEE-E--ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-Cc-EE-EEECCccCCccceeEeCCCCC-----
Confidence             332211 1  12233455667776643  55555557899999984 33 11 222333456688999988773     


Q ss_pred             EEEEecCCCcEEEEee
Q 013717          405 SVFSGSLDGEIRAWQV  420 (437)
Q Consensus       405 ~l~s~~~dg~i~iw~~  420 (437)
                      ++++ +.. .|..++.
T Consensus       285 l~v~-~~~-~i~~~~p  298 (300)
T 2qc5_A          285 VWFA-LKC-KIGKLNL  298 (300)
T ss_dssp             EEEE-CSS-EEEEEEE
T ss_pred             EEEE-ccC-ceEEeCC
Confidence            4444 434 6666654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.44  E-value=2.5e-11  Score=104.46  Aligned_cols=186  Identities=10%  Similarity=-0.012  Sum_probs=136.0

Q ss_pred             CeEEEEECCCcEEEEECCCcceEEEeeccc-ccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCc-cccE
Q 013717          223 GLIYSVSWDKSLKIWRASDLRCLESIKAHE-DAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKH-KSAV  300 (437)
Q Consensus       223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~i  300 (437)
                      +.|++++.++.|.+||.++++.+..+..+. ..+.++.+.|+|+++. +.++.|..||. .+    +.+..+..+ ...+
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G----~~~W~~~~~~~~~~   79 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DG----RELWNIAAPAGCEM   79 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TS----CEEEEEECCTTCEE
T ss_pred             cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CC----CEEEEEcCCCCccc
Confidence            678889999999999999999999998665 4789999999999555 56788999986 33    355555544 3578


Q ss_pred             EEEEEccCCCEEEEEeC-CCcEEEEECCCCccceEEeeee--cccccce--EEEEeeCCEEEEEeCCCcEEEeeCCCCCC
Q 013717          301 NALALSDDGTVLFSGAC-DRSILVWDREDSANHMVVTGAL--RGHGKAI--LCLINVAGLLMSGSADRTVRIWQRGSDGR  375 (437)
Q Consensus       301 ~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~--~~~~~~i--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  375 (437)
                      .++.+.++|+++++.+. ++.|..+|. +++....+....  ..+....  ..+..+++++++...++.|..||.. ++ 
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~-  156 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ-  156 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC-
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC-
Confidence            89999999999999887 788888886 444433332110  1111111  2345567799999999999999988 66 


Q ss_pred             eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          376 FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       376 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                        .+.++..+ ..+.++...+++.     ++++++.+++|..+|.++++.
T Consensus       157 --~~w~~~~~-~~~~~~~~~~~g~-----~~v~~~~~~~v~~~d~~tG~~  198 (276)
T 3no2_A          157 --LLNSVKLS-GTPFSSAFLDNGD-----CLVACGDAHCFVQLNLESNRI  198 (276)
T ss_dssp             --EEEEEECS-SCCCEEEECTTSC-----EEEECBTTSEEEEECTTTCCE
T ss_pred             --EEEEEECC-CCccceeEcCCCC-----EEEEeCCCCeEEEEeCcCCcE
Confidence              56666544 3556677777764     788888888898888776654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.43  E-value=4.8e-10  Score=101.49  Aligned_cols=269  Identities=11%  Similarity=0.077  Sum_probs=168.1

Q ss_pred             eeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCC-----CcccEEEEEEeCCeEEEEecCCeEEEEeCCCCccccccc
Q 013717          106 VHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDS-----SSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKT  179 (437)
Q Consensus       106 ~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  179 (437)
                      ..+..++.++.+ .|..+|.++++..-.........     .......+...++.++.++.++.|..+|..+++......
T Consensus        51 v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           51 LADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             EETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            357788888877 99999998864432222210000     112234455567779999999999999999887543332


Q ss_pred             ccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEeecccccE----
Q 013717          180 TLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAV----  255 (437)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v----  255 (437)
                      ..                              ...........+.++.++.++.|..+|..+++.+..........    
T Consensus       131 ~~------------------------------~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~  180 (376)
T 3q7m_A          131 VA------------------------------GEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRG  180 (376)
T ss_dssp             CS------------------------------SCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred             CC------------------------------CceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence            10                              00001112234788889999999999999999888776332211    


Q ss_pred             -EEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccc-------cEEEEEEcc--CCCEEEEEeCCCcEEEEE
Q 013717          256 -NAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKS-------AVNALALSD--DGTVLFSGACDRSILVWD  325 (437)
Q Consensus       256 -~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-------~i~~~~~~~--~~~~l~~~~~dg~i~i~d  325 (437)
                       ...... ++.+++++.++.|..+|..++...+.    ......       .+..+...|  .+..++.++.++.+..+|
T Consensus       181 ~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d  255 (376)
T 3q7m_A          181 ESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQ----QRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD  255 (376)
T ss_dssp             CCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEE----EECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred             CCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEE----EecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence             122222 56688889999999999876553222    211100       000011111  245778888899999999


Q ss_pred             CCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeec-CCCCCeeEEEEEccCCCCceE
Q 013717          326 REDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLE-GHTKPVKSLTAVTEEGQNGVV  404 (437)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~  404 (437)
                      .++++......      ......+...++.++.++.++.|..+|..+++   .+.... .....+....... +      
T Consensus       256 ~~tG~~~w~~~------~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~---~~w~~~~~~~~~~~~~~~~~-~------  319 (376)
T 3q7m_A          256 LRSGQIMWKRE------LGSVNDFIVDGNRIYLVDQNDRVMALTIDGGV---TLWTQSDLLHRLLTSPVLYN-G------  319 (376)
T ss_dssp             TTTCCEEEEEC------CCCEEEEEEETTEEEEEETTCCEEEEETTTCC---EEEEECTTTTSCCCCCEEET-T------
T ss_pred             CCCCcEEeecc------CCCCCCceEECCEEEEEcCCCeEEEEECCCCc---EEEeecccCCCcccCCEEEC-C------
Confidence            99887544322      12244566678889999999999999999887   333333 1222233333332 2      


Q ss_pred             EEEEecCCCcEEEEeeccCCC
Q 013717          405 SVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       405 ~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      .|+.++.+|.|.++|..+++.
T Consensus       320 ~l~v~~~~g~l~~~d~~tG~~  340 (376)
T 3q7m_A          320 NLVVGDSEGYLHWINVEDGRF  340 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEEeCCCeEEEEECCCCcE
Confidence            588888999999999888764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.41  E-value=5e-10  Score=98.57  Aligned_cols=244  Identities=11%  Similarity=0.074  Sum_probs=152.3

Q ss_pred             CccCCeEEEEee--CCEEEE-------EecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC-e-EEEEecCCe
Q 013717           96 GHKLPIGCIAVH--HNFLYA-------ASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG-K-IFTAHQDCK  163 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s-------~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~-l~s~~~dg~  163 (437)
                      ..-....+++|+  ++++++       +..+ .|.+||..+++...... ....++...+.+++++++ . ++.++..+.
T Consensus        15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~   93 (314)
T 1pjx_A           15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-PEVNGYGGIPAGCQCDRDANQLFVADMRLG   93 (314)
T ss_dssp             CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-CEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred             ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-cccCCCCCCCceEEEecCCCcEEEEECCCC
Confidence            334456788887  666666       4566 99999988765443321 011235567899999876 4 676666668


Q ss_pred             EEEEeCCCCccccc-ccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECC---------
Q 013717          164 IRVWQLTPTKHHKL-KTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWD---------  231 (437)
Q Consensus       164 i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d---------  231 (437)
                      |.+||.+ ++.... .....                          ......+.++++++  +++++...+         
T Consensus        94 l~~~d~~-g~~~~~~~~~~~--------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKDSE--------------------------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             EEEEETT-SCEEECCSBCTT--------------------------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             EEEEeCC-CCEEEEEeccCC--------------------------CccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            9999988 543222 11000                          01224577888887  444444333         


Q ss_pred             ------CcEEEEECCCcceEEEeecccccEEEEEEe----cCCe-EEEE-eCCCeEEEecCCC-Ccc-cceeeEEeeCcc
Q 013717          232 ------KSLKIWRASDLRCLESIKAHEDAVNAVAVS----AGGT-VYTG-SADRKIRVWAKPF-NEK-RHALIATLEKHK  297 (437)
Q Consensus       232 ------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~-l~~~-~~dg~v~iwd~~~-~~~-~~~~~~~~~~~~  297 (437)
                            +.|..||.. ++..... .+......++++    |++. ++++ ..++.|.+||+.. +.. .......+..+.
T Consensus       147 ~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~  224 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH  224 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred             cccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC
Confidence                  567777765 5543332 334457889999    9996 5444 5689999998752 110 111222333333


Q ss_pred             -ccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEE-EEeCCCcEEEeeCCCC
Q 013717          298 -SAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLM-SGSADRTVRIWQRGSD  373 (437)
Q Consensus       298 -~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~-~~~~dg~i~iwd~~~~  373 (437)
                       ..+..++++++|+++++...++.|.+||.++++....    +..+...+.++.++  ++.|+ +...++.|..|++...
T Consensus       225 ~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~----~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMR----IRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEE----EECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEE----EeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence             5688999999999888887888999999875543322    22344567777765  44454 4455688999998753

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.39  E-value=7.4e-10  Score=97.48  Aligned_cols=242  Identities=11%  Similarity=0.101  Sum_probs=153.6

Q ss_pred             cccEEEEEEeCCe-EEEE--------ecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717          142 SGSVKSVTFCDGK-IFTA--------HQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG  212 (437)
Q Consensus       142 ~~~v~~l~~~~~~-l~s~--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (437)
                      -....+++|+++. ++.+        ..++.|.+||..+++......  +.                        ..++.
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~--~~------------------------~~~~~   70 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK--PE------------------------VNGYG   70 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC--CE------------------------ETTEE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe--cc------------------------cCCCC
Confidence            3456789998654 5444        678999999987765321110  00                        00133


Q ss_pred             CcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEE-eec----ccccEEEEEEecCCeEEEEe-CC------------
Q 013717          213 DAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLES-IKA----HEDAVNAVAVSAGGTVYTGS-AD------------  272 (437)
Q Consensus       213 ~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~l~~~~-~d------------  272 (437)
                      ..+.++++++  ..++.++..+.|.+||.. ++.... ...    ....+.+++++++|.++.+. .+            
T Consensus        71 ~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~  149 (314)
T 1pjx_A           71 GIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred             CCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccccccc
Confidence            5678898877  467777766689999988 665433 221    12358899999999955444 33            


Q ss_pred             ---CeEEEecCCCCcccceeeEEeeCccccEEEEEEc----cCCCEEEEE-eCCCcEEEEECC-CCccc-eEEeeeeccc
Q 013717          273 ---RKIRVWAKPFNEKRHALIATLEKHKSAVNALALS----DDGTVLFSG-ACDRSILVWDRE-DSANH-MVVTGALRGH  342 (437)
Q Consensus       273 ---g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~~~-~~~~~~~~~~  342 (437)
                         +.|..||.. ..    .. .+..+......++++    |+|+.|+.+ ..++.|.+||+. .++.. ......+..+
T Consensus       150 ~~~~~l~~~~~~-g~----~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~  223 (314)
T 1pjx_A          150 EKFGSIYCFTTD-GQ----MI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT  223 (314)
T ss_dssp             SSCEEEEEECTT-SC----EE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred             CCCCeEEEECCC-CC----EE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC
Confidence               567777653 21    21 122233456889999    999766555 567899999986 33211 1111222333


Q ss_pred             c-cceEEEEee--CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717          343 G-KAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       343 ~-~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~  419 (437)
                      . .....+.++  +.++++...++.|.+||..+++   .+..+..+...+.++++++++.    .++++...++.|..|+
T Consensus       224 ~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~i~~~~dg~----~l~v~~~~~~~l~~~~  296 (314)
T 1pjx_A          224 HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ---PKMRIRCPFEKPSNLHFKPQTK----TIFVTEHENNAVWKFE  296 (314)
T ss_dssp             SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS---CSEEEECSSSCEEEEEECTTSS----EEEEEETTTTEEEEEE
T ss_pred             CCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc---EeEEEeCCCCCceeEEECCCCC----EEEEEeCCCCeEEEEe
Confidence            2 445566665  4466666678899999988655   4445555667899999988874    2566666778999999


Q ss_pred             eccC
Q 013717          420 VSVS  423 (437)
Q Consensus       420 ~~~~  423 (437)
                      +...
T Consensus       297 ~~~~  300 (314)
T 1pjx_A          297 WQRN  300 (314)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            8753

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.39  E-value=9.7e-11  Score=115.35  Aligned_cols=204  Identities=11%  Similarity=0.064  Sum_probs=134.6

Q ss_pred             CCCcEEEEEeCC--CeEEEEECCC-----cEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCe--------
Q 013717          211 HGDAVTGLAVNN--GLIYSVSWDK-----SLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRK--------  274 (437)
Q Consensus       211 ~~~~v~~~~~~~--~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~--------  274 (437)
                      |...+..++|+|  ++|+.+..++     .|++||+.+++.+..... ...+..++|+|||+ |+.++.++.        
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~  201 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCccccccccc
Confidence            444678899999  6777665443     899999999987664322 22367899999998 888887765        


Q ss_pred             --------EEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-----CCcEEEEECCC------CccceEE
Q 013717          275 --------IRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-----DRSILVWDRED------SANHMVV  335 (437)
Q Consensus       275 --------v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~~~~~~  335 (437)
                              |.+|++.+.......+.....+...+..+.|+|||++|+.++.     +..|++||+.+      +......
T Consensus       202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~  281 (710)
T 2xdw_A          202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (710)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence                    9999987654332333333334556889999999999988765     56899999976      3211111


Q ss_pred             eeeecccccc-eEEEEeeCCEEEEEeCC----CcEEEeeCCCCCCeeeeeeecCCCC--CeeEEEEEccCCCCceEEEEE
Q 013717          336 TGALRGHGKA-ILCLINVAGLLMSGSAD----RTVRIWQRGSDGRFGCLAVLEGHTK--PVKSLTAVTEEGQNGVVSVFS  408 (437)
Q Consensus       336 ~~~~~~~~~~-i~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~l~s  408 (437)
                         +..+... ...+..+++.|+..+..    +.|.+||+.++.. .....+..|..  .+..++|++++     .++++
T Consensus       282 ---l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-----~lv~~  352 (710)
T 2xdw_A          282 ---LIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE-SKWKVLVPEHEKDVLEWVACVRSN-----FLVLC  352 (710)
T ss_dssp             ---EECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEECCCSSCEEEEEEEETTT-----EEEEE
T ss_pred             ---eeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc-ccceeccCCCCCCeEEEEEEEcCC-----EEEEE
Confidence               1222222 23466677866655543    3699999987541 12244444544  68889998544     48888


Q ss_pred             ecCCCcEE--EEeeccCC
Q 013717          409 GSLDGEIR--AWQVSVSC  424 (437)
Q Consensus       409 ~~~dg~i~--iw~~~~~~  424 (437)
                      ...|+..+  +|++..++
T Consensus       353 ~~~~g~~~l~~~~~~~g~  370 (710)
T 2xdw_A          353 YLHDVKNTLQLHDLATGA  370 (710)
T ss_dssp             EEETTEEEEEEEETTTCC
T ss_pred             EEECCEEEEEEEECCCCC
Confidence            88898654  45553443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.39  E-value=1.3e-09  Score=95.03  Aligned_cols=227  Identities=10%  Similarity=0.044  Sum_probs=142.5

Q ss_pred             CcccEEEEEEeCC--e-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEE
Q 013717          141 SSGSVKSVTFCDG--K-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTG  217 (437)
Q Consensus       141 h~~~v~~l~~~~~--~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  217 (437)
                      +..-..+..|+++  . +++...++.|..||..+++... .                               .....+.+
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~-------------------------------~~~~~~~~   58 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-V-------------------------------TMDAPVSS   58 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-E-------------------------------ECSSCEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-E-------------------------------eCCCceEE
Confidence            3345568888863  3 5566678999999998764311 1                               13457889


Q ss_pred             EEeCC-CeEEEEECCCcEEEEECCCcceEEEeec----ccccEEEEEEecCCeEEEEeCC----------CeEEEecCCC
Q 013717          218 LAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKA----HEDAVNAVAVSAGGTVYTGSAD----------RKIRVWAKPF  282 (437)
Q Consensus       218 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~~~~~d----------g~v~iwd~~~  282 (437)
                      +++++ ..++.+. ++.|.+||..+++.......    ....++.++++|+|++..++..          ..-.+|.+..
T Consensus        59 i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~  137 (297)
T 3g4e_A           59 VALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP  137 (297)
T ss_dssp             EEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT
T ss_pred             EEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC
Confidence            99988 4455555 56899999988765433321    1245889999999995555421          2234444432


Q ss_pred             CcccceeeEEeeCccccEEEEEEccCCCEEE-EEeCCCcEEEEECC--CCccc-eEEeeeecccccceEEEEee--CCEE
Q 013717          283 NEKRHALIATLEKHKSAVNALALSDDGTVLF-SGACDRSILVWDRE--DSANH-MVVTGALRGHGKAILCLINV--AGLL  356 (437)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~--~~~~~-~~~~~~~~~~~~~i~~~~~~--~~~l  356 (437)
                      ..   ... .+.......+.++|+||++.|+ +.+.++.|.+|++.  ++... ......+..+......+..+  +++.
T Consensus       138 ~g---~~~-~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lw  213 (297)
T 3g4e_A          138 DH---HVK-KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLW  213 (297)
T ss_dssp             TS---CEE-EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEE
T ss_pred             CC---CEE-EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEE
Confidence            22   111 1222345578999999998765 45557889999974  44311 11122222233445556655  4466


Q ss_pred             EEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEE-ccCCCCceEEEEEecC
Q 013717          357 MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAV-TEEGQNGVVSVFSGSL  411 (437)
Q Consensus       357 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~~~~~~l~s~~~  411 (437)
                      ++....+.|.+||..+++   .+..+..+...+++++|. |++..    ++++...
T Consensus       214 va~~~~~~v~~~d~~tG~---~~~~i~~p~~~~t~~~f~g~d~~~----L~vt~~~  262 (297)
T 3g4e_A          214 VACYNGGRVIRLDPVTGK---RLQTVKLPVDKTTSCCFGGKNYSE----MYVTCAR  262 (297)
T ss_dssp             EEEETTTEEEEECTTTCC---EEEEEECSSSBEEEEEEESGGGCE----EEEEEBC
T ss_pred             EEEcCCCEEEEEcCCCce---EEEEEECCCCCceEEEEeCCCCCE----EEEEcCC
Confidence            666667889999998766   666777677789999998 76653    5555543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.37  E-value=7.3e-11  Score=104.77  Aligned_cols=291  Identities=14%  Similarity=0.097  Sum_probs=178.7

Q ss_pred             ccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee-CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEE
Q 013717           71 LQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH-HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSV  148 (437)
Q Consensus        71 ~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~-~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l  148 (437)
                      +...+.++.+..++ .. ....... .+...+.++... +..|+.++.+ |..+|. ++  +....+   ..........
T Consensus        33 l~v~t~~~~l~~~d-~~-g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~-l~~~d~-~g--~~~~~~---~~~~~~~~~~  103 (330)
T 3hxj_A           33 IYLGSSNKNLYAIN-TD-GSVKWFFKSGEIIECRPSIGKDGTIYFGSDK-VYAINP-DG--TEKWRF---DTKKAIVSDF  103 (330)
T ss_dssp             EECSSTTTTTEEEC-TT-SCEEESSCGGGEEEECCEETTTTEECCSSCE-EEEECC-CG--GGGGGS---CC-----CCE
T ss_pred             EEEEcCCCEEEEEC-CC-CcEEEEEecCCCcccceEEecCCcEEEecCc-EEEECC-CC--cEEEEE---ECCCCcccCc
Confidence            44455677788887 33 3333334 344556777776 6677777777 888886 32  222222   1122222333


Q ss_pred             EEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEE
Q 013717          149 TFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYS  227 (437)
Q Consensus       149 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~  227 (437)
                      .+.++.++.++.++.|..+|.. ++......                              .....+.++...+ ..++.
T Consensus       104 ~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~------------------------------~~~~~~~~~~~~~~g~l~v  152 (330)
T 3hxj_A          104 TIFEDILYVTSMDGHLYAINTD-GTEKWRFK------------------------------TKKAIYATPIVSEDGTIYV  152 (330)
T ss_dssp             EEETTEEEEECTTSEEEEECTT-SCEEEEEE------------------------------CSSCCCSCCEECTTSCEEE
T ss_pred             eEECCEEEEEecCCEEEEEcCC-CCEEEEEc------------------------------CCCceeeeeEEcCCCEEEE
Confidence            3446678889889999999987 54322211                              1222334445554 67888


Q ss_pred             EECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEcc
Q 013717          228 VSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD  307 (437)
Q Consensus       228 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~  307 (437)
                      ++.++.|..+|.. ++.+..+......+.++...+++.+..++  +.|..+| ....    ...........+.++...+
T Consensus       153 gt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~----~~~~~~~~~~~~~~~~~~~  224 (330)
T 3hxj_A          153 GSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGT----EKWNFYAGYWTVTRPAISE  224 (330)
T ss_dssp             ECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSC----EEEEECCSSCCCSCCEECT
T ss_pred             EcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCc----EEEEEccCCcceeceEECC
Confidence            8888999999998 88777776556667778887888877777  8889998 3332    3333444445677888888


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee-CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCC
Q 013717          308 DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV-AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHT  386 (437)
Q Consensus       308 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~  386 (437)
                      +|. |..++.++.|..+|. +++.....    ......+..+..+ +..|..++.+|.|..+|. +++   .+..+....
T Consensus       225 ~g~-l~v~t~~~gl~~~~~-~g~~~~~~----~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~---~~~~~~~~~  294 (330)
T 3hxj_A          225 DGT-IYVTSLDGHLYAINP-DGTEKWRF----KTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGT---EKWNFETGS  294 (330)
T ss_dssp             TSC-EEEEETTTEEEEECT-TSCEEEEE----ECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSC---EEEEEECSS
T ss_pred             CCe-EEEEcCCCeEEEECC-CCCEeEEe----eCCCCccccceEcCCCeEEEecCCCCEEEECC-CCc---EEEEEEcCC
Confidence            875 555667788888874 33322222    1112222223334 457888899989999995 444   344444445


Q ss_pred             CCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          387 KPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       387 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      ..+.++...+++      .|..++.+|.+++...+..++
T Consensus       295 ~~~~~~~~d~~g------~l~~gt~~G~~~~~~~~~~~~  327 (330)
T 3hxj_A          295 WIIATPVIDENG------TIYFGTRNGKFYALFNLEHHH  327 (330)
T ss_dssp             CCCSCCEECTTC------CEEEECTTSCEEEEEC-----
T ss_pred             ccccceEEcCCC------EEEEEcCCCeEEEEecccccc
Confidence            567777766665      477899999999988776544

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.37  E-value=2.5e-11  Score=119.23  Aligned_cols=199  Identities=9%  Similarity=-0.018  Sum_probs=130.5

Q ss_pred             cCCCcEEEEEeCC--CeEEE-----EECCCcEEEEECCCcceEEEeecccccE--EEEEEecCCe-EEEEeCCCe-----
Q 013717          210 EHGDAVTGLAVNN--GLIYS-----VSWDKSLKIWRASDLRCLESIKAHEDAV--NAVAVSAGGT-VYTGSADRK-----  274 (437)
Q Consensus       210 ~~~~~v~~~~~~~--~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~-l~~~~~dg~-----  274 (437)
                      +|...+..++|+|  ++|+.     |+.+..|++||+.+++.+..  .+...+  ..++|+|||+ |+.++.+..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV--DVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS--CCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC--cccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            3555788999999  66663     33446899999999886411  111222  6789999998 888888765     


Q ss_pred             --------EEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC----cEEEEECCCCccceEEeeeeccc
Q 013717          275 --------IRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR----SILVWDREDSANHMVVTGALRGH  342 (437)
Q Consensus       275 --------v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~  342 (437)
                              |++|++.+......++.....+...+..+.|+|||++|+.++.++    .|++++..+++ ...+..    +
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~----~  270 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVK----G  270 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEE----C
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeec----C
Confidence                    999999765543345544445556789999999999998887666    67777665443 222221    2


Q ss_pred             ccceEE-EEeeCCEEEEEe---CCCcEEEeeCCCCCCeeeeeeecCC-CCCeeEEEEEccCCCCceEEEEEecCCCcEEE
Q 013717          343 GKAILC-LINVAGLLMSGS---ADRTVRIWQRGSDGRFGCLAVLEGH-TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRA  417 (437)
Q Consensus       343 ~~~i~~-~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  417 (437)
                      ...+.. +..++++++...   .++.|.+||+.+++.......+..+ ...|..++|+ ++     .++++...|+..++
T Consensus       271 ~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~-----~lv~~~~~dg~~~l  344 (695)
T 2bkl_A          271 VGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG-----HLSLEYLKDATSEV  344 (695)
T ss_dssp             SSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT-----EEEEEEEETTEEEE
T ss_pred             CCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC-----EEEEEEEECCEEEE
Confidence            222222 234455333333   2578999999875421112223333 4568888887 33     48999999999999


Q ss_pred             Eeec
Q 013717          418 WQVS  421 (437)
Q Consensus       418 w~~~  421 (437)
                      |.++
T Consensus       345 ~~~~  348 (695)
T 2bkl_A          345 RVAT  348 (695)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9776

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.33  E-value=1.8e-08  Score=87.79  Aligned_cols=264  Identities=9%  Similarity=0.042  Sum_probs=162.2

Q ss_pred             ceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccc
Q 013717           61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFN  136 (437)
Q Consensus        61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~  136 (437)
                      .+...+.....++...++.|..++.. .......+ .+...+.+++++  ++++++...+ .|..||.. ++..... . 
T Consensus        24 ~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~-~-   99 (300)
T 2qc5_A           24 GITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYP-L-   99 (300)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE-C-
T ss_pred             eeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEec-C-
Confidence            45566666666666677889988877 33222233 445788999998  6666665556 89999988 4333221 1 


Q ss_pred             cCCCCcccEEEEEEeCCe-EEEE-ecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCc
Q 013717          137 DNDSSSGSVKSVTFCDGK-IFTA-HQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA  214 (437)
Q Consensus       137 ~~~~h~~~v~~l~~~~~~-l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (437)
                        ......+.++++.++. ++.+ ..++.|..|+.. ++.....  +                           ......
T Consensus       100 --~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~--~---------------------------~~~~~~  147 (300)
T 2qc5_A          100 --PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYD--L---------------------------PNKGSY  147 (300)
T ss_dssp             --SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEE--C---------------------------SSTTCC
T ss_pred             --CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEcc--C---------------------------CCCCCC
Confidence              1234678999998554 5444 447889999876 4322110  0                           013346


Q ss_pred             EEEEEeCC-CeEEEEE-CCCcEEEEECCCcceEEE-eecccccEEEEEEecCCeEEEEe-CCCeEEEecCCCCcccceee
Q 013717          215 VTGLAVNN-GLIYSVS-WDKSLKIWRASDLRCLES-IKAHEDAVNAVAVSAGGTVYTGS-ADRKIRVWAKPFNEKRHALI  290 (437)
Q Consensus       215 v~~~~~~~-~~l~~~~-~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~  290 (437)
                      +.++++++ ..++.+. .++.|..+|. +++.... .......+..+++.+++.+..+. ..+.|.+||.. +.   ...
T Consensus       148 ~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~---~~~  222 (300)
T 2qc5_A          148 PAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-GE---ISE  222 (300)
T ss_dssp             EEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CC---EEE
T ss_pred             ceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-Cc---EEE
Confidence            78888887 4344444 4788999998 5554432 12334568899999999855554 46789999873 22   111


Q ss_pred             EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEee
Q 013717          291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQ  369 (437)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd  369 (437)
                      .........+.+++++++|++.++...++.|..||.. ++. ...  ........+.++..+++ .|..++.. .|..+|
T Consensus       223 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~-~~~--~~~~~~~~~~~i~~~~~g~l~v~~~~-~i~~~~  297 (300)
T 2qc5_A          223 YDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTI-QEY--QLQTENAEPHGITFGKDGSVWFALKC-KIGKLN  297 (300)
T ss_dssp             EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-EEE--ECCSTTCCCCCEEECTTSCEEEECSS-EEEEEE
T ss_pred             EECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcE-EEE--ECCccCCccceeEeCCCCCEEEEccC-ceEEeC
Confidence            1222345678999999999877766667899999983 321 111  12222344555665533 34444444 666666


Q ss_pred             C
Q 013717          370 R  370 (437)
Q Consensus       370 ~  370 (437)
                      .
T Consensus       298 p  298 (300)
T 2qc5_A          298 L  298 (300)
T ss_dssp             E
T ss_pred             C
Confidence            4

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.32  E-value=6e-09  Score=93.68  Aligned_cols=264  Identities=9%  Similarity=0.017  Sum_probs=159.1

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEe----------cCCeEEEEeCCCCcccccccccCccc
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAH----------QDCKIRVWQLTPTKHHKLKTTLPTVN  185 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~  185 (437)
                      .|.+||..+++  .+..+.   ....+  .++++|++  ++.+.          .++.|.+||..+.+....+.....  
T Consensus        48 ~v~v~D~~t~~--~~~~i~---~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~--  118 (373)
T 2mad_H           48 QQWVLDAGSGS--ILGHVN---GGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDA--  118 (373)
T ss_pred             EEEEEECCCCe--EEEEec---CCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCc--
Confidence            67899998853  444442   12223  89999776  55553          367899999987654433321000  


Q ss_pred             cceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC--CCcEEEEECCCcceEEE-eecccccEEEEEE
Q 013717          186 DRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW--DKSLKIWRASDLRCLES-IKAHEDAVNAVAV  260 (437)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~  260 (437)
                                         .+.  .+......+.++|  ++|+++..  ++.|.++| .+++.+.. +.. ..   ++.+
T Consensus       119 -------------------~~~--~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~---~~~~  172 (373)
T 2mad_H          119 -------------------PRF--DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT---CYHI  172 (373)
T ss_pred             -------------------ccc--ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc---eEEE
Confidence                               000  0112344788887  78887764  57899999 99998877 642 22   2445


Q ss_pred             ecCCe--EEEEeCCCeEEEecCCCCcccceee--EEeeCcccc-EEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEE
Q 013717          261 SAGGT--VYTGSADRKIRVWAKPFNEKRHALI--ATLEKHKSA-VNALALSDDGTVLFSGACDRSILVWDREDSANHMVV  335 (437)
Q Consensus       261 ~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (437)
                      .|++.  +++.+.||.+.++|. .........  ..+ ....+ .....+.+++..++..+..+.+.+.|+.......  
T Consensus       173 ~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v--  248 (373)
T 2mad_H          173 HPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATN--  248 (373)
T ss_pred             EeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceE--
Confidence            56654  777888999999988 443211100  001 11122 2334566766555555578899999997543221  


Q ss_pred             eeeec------------ccccceEEEEeeCCEEEEEeC----------CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEE
Q 013717          336 TGALR------------GHGKAILCLINVAGLLMSGSA----------DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLT  393 (437)
Q Consensus       336 ~~~~~------------~~~~~i~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~  393 (437)
                      ...+.            ........+..+++.++++..          ++.|.++|..+.+   .+..+.. .....+++
T Consensus       249 ~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~---vv~~i~~-g~~p~~i~  324 (373)
T 2mad_H          249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ---TSSQISL-GHDVDAIS  324 (373)
T ss_pred             eeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE---EEEEEEC-CCCcCeEE
Confidence            11111            111122344555565555432          3579999999866   5555542 33688999


Q ss_pred             EEccCCCCceEEEEEec-CCCcEEEEeeccCCCCCC
Q 013717          394 AVTEEGQNGVVSVFSGS-LDGEIRAWQVSVSCPNSS  428 (437)
Q Consensus       394 ~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~  428 (437)
                      |+|++..    +++++. .++.|.+||+.+.+....
T Consensus       325 ~s~Dg~~----~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          325 VAQDGGP----DLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             ECCCCCe----EEEEEcCCCCeEEEEECCCCCEEee
Confidence            9999852    566666 589999999998875443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.32  E-value=6.4e-11  Score=105.64  Aligned_cols=164  Identities=13%  Similarity=0.050  Sum_probs=119.9

Q ss_pred             cEEEEEeCC--CeEEEEECCCcEEEEECCCcc-----------eEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEec
Q 013717          214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLR-----------CLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWA  279 (437)
Q Consensus       214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd  279 (437)
                      +++.+++++  +++++|+.+ .+.+|+++..+           ..... .+.. |+.++|  ++. |+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            578888887  888888887 56669876443           11222 3555 999999  666 7777 889999999


Q ss_pred             CCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEE
Q 013717          280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSG  359 (437)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~  359 (437)
                      ++... .   ......+...+.++.+.+.  .+++++.||.|.+||+.++...    .    +...|.|++|+++-++.|
T Consensus       113 v~sl~-~---~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~----~----~~~~Vs~v~WSpkG~~vg  178 (388)
T 1xip_A          113 LEELS-E---FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK----Q----LAQNVTSFDVTNSQLAVL  178 (388)
T ss_dssp             SSSTT-C---EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE----E----EEESEEEEEECSSEEEEE
T ss_pred             chhhh-c---cCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc----c----ccCCceEEEEcCCceEEE
Confidence            87544 2   2233445667888877754  3888899999999999876532    1    346789999998878899


Q ss_pred             eCCCcEEEeeCCCCCCeeeeeee------c---CCCCCeeEEEEEccC
Q 013717          360 SADRTVRIWQRGSDGRFGCLAVL------E---GHTKPVKSLTAVTEE  398 (437)
Q Consensus       360 ~~dg~i~iwd~~~~~~~~~~~~~------~---~h~~~v~~l~~~~~~  398 (437)
                      ..||.+++|+...... ....++      .   +|...|.+|.|.+++
T Consensus       179 ~~dg~i~~~~~~~~~~-~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~  225 (388)
T 1xip_A          179 LKDRSFQSFAWRNGEM-EKQFEFSLPSELEELPVEEYSPLSVTILSPQ  225 (388)
T ss_dssp             ETTSCEEEEEEETTEE-EEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred             EcCCcEEEEcCCCccc-cccceecCCcccccccCCCeeEEEEEEecCC
Confidence            9999999998876441 003334      3   478899999999876

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.30  E-value=1.6e-08  Score=88.11  Aligned_cols=218  Identities=9%  Similarity=0.044  Sum_probs=136.3

Q ss_pred             ccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCC
Q 013717           97 HKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTP  171 (437)
Q Consensus        97 h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~  171 (437)
                      +..---+..|+   +.++++...+ .|..||..++....   +    .....+.+++++++. ++.+. ++.|.+||.++
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---~----~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~   82 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR---V----TMDAPVSSVALRQSGGYVATI-GTKFCALNWKE   82 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE---E----ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTT
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE---E----eCCCceEEEEECCCCCEEEEE-CCeEEEEECCC
Confidence            33445677787   4556666666 99999998864322   2    134678999999765 66665 56899999987


Q ss_pred             CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEEC----------CCcEEEEECC
Q 013717          172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSW----------DKSLKIWRAS  240 (437)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~----------dg~i~iwd~~  240 (437)
                      ++.........                          ......++++++++ ..++.+..          ...-.+|.+.
T Consensus        83 g~~~~~~~~~~--------------------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d  136 (297)
T 3g4e_A           83 QSAVVLATVDN--------------------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLF  136 (297)
T ss_dssp             TEEEEEEECCT--------------------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEEC
T ss_pred             CcEEEEEecCC--------------------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEE
Confidence            65322211000                          00223578888888 44444431          1233455443


Q ss_pred             C-cceEEEeecccccEEEEEEecCCe-E-EEEeCCCeEEEecCC--CCccc-ceeeEEeeCccccEEEEEEccCCCEEEE
Q 013717          241 D-LRCLESIKAHEDAVNAVAVSAGGT-V-YTGSADRKIRVWAKP--FNEKR-HALIATLEKHKSAVNALALSDDGTVLFS  314 (437)
Q Consensus       241 ~-~~~~~~~~~~~~~v~~~~~~~~~~-l-~~~~~dg~v~iwd~~--~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~  314 (437)
                      . ++.. .+.......+.++|+|+++ + ++.+.++.|.+||+.  .+... .+....+......+..++++++|++.++
T Consensus       137 ~~g~~~-~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva  215 (297)
T 3g4e_A          137 PDHHVK-KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVA  215 (297)
T ss_dssp             TTSCEE-EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEE
T ss_pred             CCCCEE-EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEE
Confidence            2 3332 2333445578999999997 4 556668999999874  22111 1222333334567889999999988888


Q ss_pred             EeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC
Q 013717          315 GACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA  353 (437)
Q Consensus       315 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~  353 (437)
                      ...++.|.+||..+++.    ...+..+...+.+++|.+
T Consensus       216 ~~~~~~v~~~d~~tG~~----~~~i~~p~~~~t~~~f~g  250 (297)
T 3g4e_A          216 CYNGGRVIRLDPVTGKR----LQTVKLPVDKTTSCCFGG  250 (297)
T ss_dssp             EETTTEEEEECTTTCCE----EEEEECSSSBEEEEEEES
T ss_pred             EcCCCEEEEEcCCCceE----EEEEECCCCCceEEEEeC
Confidence            77788899999987763    333344456678888874

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.30  E-value=9.5e-09  Score=90.87  Aligned_cols=220  Identities=12%  Similarity=0.032  Sum_probs=135.8

Q ss_pred             EEEEEEeCC--e-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717          145 VKSVTFCDG--K-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN  221 (437)
Q Consensus       145 v~~l~~~~~--~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  221 (437)
                      ..+..|+++  . +++...++.|..||..+++... .                               .....+.++.+.
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~-------------------------------~~~~~v~~i~~~   98 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-H-------------------------------ALPFMGSALAKI   98 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E-------------------------------ECSSCEEEEEEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-E-------------------------------ECCCcceEEEEe
Confidence            456778864  3 5666678899999988764211 1                               123468888887


Q ss_pred             C-CeEEEEECCCcEEEEECCCcceEEEeec----ccccEEEEEEecCCeEEEEeC-------CCeEEEecCCCCccccee
Q 013717          222 N-GLIYSVSWDKSLKIWRASDLRCLESIKA----HEDAVNAVAVSAGGTVYTGSA-------DRKIRVWAKPFNEKRHAL  289 (437)
Q Consensus       222 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~~~~~-------dg~v~iwd~~~~~~~~~~  289 (437)
                      + ..++.++.+ .|.+||..+++.......    ....+..++++|+|.++.++.       .+.|..++ . .    +.
T Consensus        99 ~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~-g----~~  171 (326)
T 2ghs_A           99 SDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-K-G----KV  171 (326)
T ss_dssp             ETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-T-T----EE
T ss_pred             CCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-C-C----cE
Confidence            7 555556654 499999988875433221    123588999999999555543       24555554 1 1    11


Q ss_pred             eEEeeCccccEEEEEEccCCCEEEEE-eCCCcEEEEECC--CC-ccce-EEeeeecccccceEEEEee--CCEEEEEeCC
Q 013717          290 IATLEKHKSAVNALALSDDGTVLFSG-ACDRSILVWDRE--DS-ANHM-VVTGALRGHGKAILCLINV--AGLLMSGSAD  362 (437)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~--~~-~~~~-~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d  362 (437)
                       ..+.........++|+|||+.|+.+ +.++.|.+||+.  ++ .... .....+.........+..+  +.+.++...+
T Consensus       172 -~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~  250 (326)
T 2ghs_A          172 -TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE  250 (326)
T ss_dssp             -EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT
T ss_pred             -EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCC
Confidence             1222233456789999999877555 457899999986  44 2111 1111222223344556665  4455555566


Q ss_pred             CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEE-ccCCCCceEEEEEecCC
Q 013717          363 RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAV-TEEGQNGVVSVFSGSLD  412 (437)
Q Consensus       363 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~~~~~~l~s~~~d  412 (437)
                      +.|.+||.. ++   .+..+..+...+++++|. +++.    .++++...+
T Consensus       251 ~~v~~~d~~-g~---~~~~i~~~~~~~~~~af~g~d~~----~L~vt~~~~  293 (326)
T 2ghs_A          251 GAVDRYDTD-GN---HIARYEVPGKQTTCPAFIGPDAS----RLLVTSARE  293 (326)
T ss_dssp             TEEEEECTT-CC---EEEEEECSCSBEEEEEEESTTSC----EEEEEEBCT
T ss_pred             CEEEEECCC-CC---EEEEEECCCCCcEEEEEecCCCC----EEEEEecCC
Confidence            889999984 44   455666666679999998 6654    245555544

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.29  E-value=1.9e-09  Score=95.73  Aligned_cols=275  Identities=10%  Similarity=0.015  Sum_probs=163.7

Q ss_pred             CCEEEEEec-----C-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEe----------cCCeEEEEeC
Q 013717          108 HNFLYAASS-----H-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAH----------QDCKIRVWQL  169 (437)
Q Consensus       108 ~~~l~s~~~-----d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~----------~dg~i~iwd~  169 (437)
                      ++.++....     + .|.+.|..++  +.+..+..   ...+  .++++|++  ++.+.          .++.|.+||.
T Consensus        44 ~~~vyV~~~~~~~~~~~V~ViD~~t~--~v~~~I~v---G~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~  116 (386)
T 3sjl_D           44 ARRVYVNDPAHFAAVTQQFVIDGEAG--RVIGMIDG---GFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP  116 (386)
T ss_dssp             TTEEEEEECGGGCSSEEEEEEETTTT--EEEEEEEE---CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             CCEEEEEcCcccCCCCEEEEEECCCC--eEEEEEEC---CCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence            444444442     5 8999999984  44455422   1223  39999776  55544          3678999999


Q ss_pred             CCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC--CCcEEEEECCCcceE
Q 013717          170 TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW--DKSLKIWRASDLRCL  245 (437)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~--dg~i~iwd~~~~~~~  245 (437)
                      .+.+....+..-....                       .........+.+++  ++++++..  ++.|.++|+.+++.+
T Consensus       117 ~t~~v~~~I~v~~g~r-----------------------~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv  173 (386)
T 3sjl_D          117 VTLLPTADIELPDAPR-----------------------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK  173 (386)
T ss_dssp             TTCCEEEEEEETTCCC-----------------------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred             CCCeEEEEEECCCccc-----------------------cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEE
Confidence            9887554432110000                       00112334577777  77777764  689999999999999


Q ss_pred             EEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceee-EEeeCccccEE-EEEEc-cCCCEEEEEeCCCcE
Q 013717          246 ESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALI-ATLEKHKSAVN-ALALS-DDGTVLFSGACDRSI  321 (437)
Q Consensus       246 ~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~i~-~~~~~-~~~~~l~~~~~dg~i  321 (437)
                      .++....  . ...+....+ +++.+.||.+.+.++.......... ..+.....++. ...|. ++|++++ .+.+|.|
T Consensus       174 ~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V  249 (386)
T 3sjl_D          174 RMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKI  249 (386)
T ss_dssp             EEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEE
T ss_pred             EEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEE
Confidence            9886322  1 222322333 7788889999999886522211100 01111112221 23554 6776555 4558999


Q ss_pred             EEEECCCCccceEEeeee------------cccccceEEEEeeCCEEEEEeC----------CCcEEEeeCCCCCCeeee
Q 013717          322 LVWDREDSANHMVVTGAL------------RGHGKAILCLINVAGLLMSGSA----------DRTVRIWQRGSDGRFGCL  379 (437)
Q Consensus       322 ~i~d~~~~~~~~~~~~~~------------~~~~~~i~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~  379 (437)
                      ++.|+.+....  +...+            .........+...++.++....          .+.|.++|+.+.+   .+
T Consensus       250 ~v~d~~~~~~~--v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k---v~  324 (386)
T 3sjl_D          250 HQIDLSSGDAK--FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE---RL  324 (386)
T ss_dssp             EEEECTTSSCE--ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---EE
T ss_pred             EEEECCCCcce--eecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe---EE
Confidence            99999765422  11111            1112234555555565555432          2479999999977   44


Q ss_pred             eeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          380 AVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       380 ~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      ..+.- ...+..|++++++..   +++++...++.|.++|..+++.
T Consensus       325 ~~i~v-g~~~~~lavs~D~~~---~ly~tn~~~~~VsViD~~t~k~  366 (386)
T 3sjl_D          325 AKFEM-GHEIDSINVSQDEKP---LLYALSTGDKTLYIHDAESGEE  366 (386)
T ss_dssp             EEEEE-EEEECEEEECSSSSC---EEEEEETTTTEEEEEETTTCCE
T ss_pred             EEEEC-CCCcceEEECCCCCe---EEEEEcCCCCeEEEEECCCCcE
Confidence            44432 237889999999853   2455566799999999998864

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.28  E-value=1.8e-09  Score=98.45  Aligned_cols=234  Identities=12%  Similarity=0.087  Sum_probs=148.6

Q ss_pred             ccEEEEEEeCCe-E-EEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe
Q 013717          143 GSVKSVTFCDGK-I-FTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV  220 (437)
Q Consensus       143 ~~v~~l~~~~~~-l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  220 (437)
                      .....|+++++. | ++...++.|++||..++.......                               ...... +++
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~-------------------------------~~~~~~-ia~  178 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP-------------------------------GFKGGK-PAV  178 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE-------------------------------TCCBCB-CEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec-------------------------------cCCCCc-eeE
Confidence            468899998655 4 444556899999998765432221                               111222 777


Q ss_pred             CC--CeEEEEECCC--cEEEEECCCcceEEEe----ecccccEEEEEEec-CCeEEEEeCCCeEEEecCCCCcccceeeE
Q 013717          221 NN--GLIYSVSWDK--SLKIWRASDLRCLESI----KAHEDAVNAVAVSA-GGTVYTGSADRKIRVWAKPFNEKRHALIA  291 (437)
Q Consensus       221 ~~--~~l~~~~~dg--~i~iwd~~~~~~~~~~----~~~~~~v~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  291 (437)
                      ++  +.|+++..++  .|.+++...+.....+    ......+.+++++| ++.|+++..++.|..||.....  ...+.
T Consensus       179 ~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~--~~~~~  256 (409)
T 3hrp_A          179 TKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE--VTLIK  256 (409)
T ss_dssp             CTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC--EEEEE
T ss_pred             ecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC--EEEEe
Confidence            77  6788887766  7999998766544443    21446678899999 6677777788999999986443  11111


Q ss_pred             E--eeCccccE-E-EEEEccC-CCEEEEEeCCCcEEEEECCCCccceEEeeee--cc---------cccceEEEEee--C
Q 013717          292 T--LEKHKSAV-N-ALALSDD-GTVLFSGACDRSILVWDREDSANHMVVTGAL--RG---------HGKAILCLINV--A  353 (437)
Q Consensus       292 ~--~~~~~~~i-~-~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~---------~~~~i~~~~~~--~  353 (437)
                      .  ..+....- . .++|+|+ +.++++-..++.|+.|+....  ...+....  .+         .-.....++++  +
T Consensus       257 ~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG  334 (409)
T 3hrp_A          257 QLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG  334 (409)
T ss_dssp             ECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC
T ss_pred             cccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC
Confidence            1  11111111 3 8999995 656666667889999997643  22221110  00         01234556665  4


Q ss_pred             CEEEEEe-CCCcEEEeeCCCCCCeeeeeeecCC---------------CCCeeEEEEEccCCCCceEEEEEecCCCcEEE
Q 013717          354 GLLMSGS-ADRTVRIWQRGSDGRFGCLAVLEGH---------------TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRA  417 (437)
Q Consensus       354 ~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~h---------------~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  417 (437)
                      +++++-. .++.|+.|++.++.    +.++.++               -.....|++.+++     .++++-..+++|+.
T Consensus       335 ~lyvad~~~~~~I~~~~~~~G~----v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g-----~lyVad~~n~~Ir~  405 (409)
T 3hrp_A          335 NFYIVDGFKGYCLRKLDILDGY----VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEG-----GYWIAEAWGKAIRK  405 (409)
T ss_dssp             CEEEEETTTTCEEEEEETTTTE----EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS-----EEEEEESTTCEEEE
T ss_pred             CEEEEeCCCCCEEEEEECCCCE----EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC-----CEEEEECCCCeEEE
Confidence            5666666 78899999976543    3333333               2468899999986     47788888889998


Q ss_pred             Eeec
Q 013717          418 WQVS  421 (437)
Q Consensus       418 w~~~  421 (437)
                      ++++
T Consensus       406 i~~e  409 (409)
T 3hrp_A          406 YAVE  409 (409)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            8764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.27  E-value=2.2e-08  Score=97.32  Aligned_cols=336  Identities=9%  Similarity=0.046  Sum_probs=188.0

Q ss_pred             ccccCCCceeEEecCCCcceeeeecCccC-----------CeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccC
Q 013717           71 LQKLSPDETINFSSASHLCINSVQLGHKL-----------PIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDN  138 (437)
Q Consensus        71 ~~s~s~dg~i~~~~~~~~~~~~~~~~h~~-----------~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~  138 (437)
                      +...+.++.+..+|.......-..-....           .-..+++.+..++.++.+ .|..+|..+++..-.......
T Consensus        80 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~  159 (677)
T 1kb0_A           80 MYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEG  159 (677)
T ss_dssp             EEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTT
T ss_pred             EEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcC
Confidence            34445567777777755333322221110           112455568888888888 999999998744322222100


Q ss_pred             CCCcccEE-EEEEeCCeEEEEec------CCeEEEEeCCCCcccccccccCccccceeeecCCC--CeeEEeeccceeee
Q 013717          139 DSSSGSVK-SVTFCDGKIFTAHQ------DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPN--SYVTVRRHKKKLWI  209 (437)
Q Consensus       139 ~~h~~~v~-~l~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  209 (437)
                      ......+. .....++.++.++.      +|.|+.+|..+++................  ..+.  ............+.
T Consensus       160 ~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~--~~~~~~~g~~~w~~~g~~~~  237 (677)
T 1kb0_A          160 QKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPF--EDESMKRAARTWDPSGKWWE  237 (677)
T ss_dssp             CCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC--SSHHHHHHHTTSCGGGCHHH
T ss_pred             cCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccc--cccccccccccccccCceeE
Confidence            00001111 12234566666654      79999999999987655443221100000  0000  00000000000000


Q ss_pred             --cCCCcEEEEEeCC--CeEEEEECCC-------------------cEEEEECCCcceEEEeec--cc-------ccEEE
Q 013717          210 --EHGDAVTGLAVNN--GLIYSVSWDK-------------------SLKIWRASDLRCLESIKA--HE-------DAVNA  257 (437)
Q Consensus       210 --~~~~~v~~~~~~~--~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~--~~-------~~v~~  257 (437)
                        +.......+++++  +.++.+..++                   .|..+|..+++.+..++.  |.       .....
T Consensus       238 ~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l  317 (677)
T 1kb0_A          238 AGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMIL  317 (677)
T ss_dssp             HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEE
T ss_pred             eCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEE
Confidence              1111222455655  6777776553                   599999999999888763  21       12222


Q ss_pred             EEEecCC---e-EEEEeCCCeEEEecCCCCcccceeeEEeeCc-----------cccE----------------------
Q 013717          258 VAVSAGG---T-VYTGSADRKIRVWAKPFNEKRHALIATLEKH-----------KSAV----------------------  300 (437)
Q Consensus       258 ~~~~~~~---~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-----------~~~i----------------------  300 (437)
                      +....+|   . ++.++.+|.|.++|..+++.    +......           ..++                      
T Consensus       318 ~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~----l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~  393 (677)
T 1kb0_A          318 ADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF----ISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH  393 (677)
T ss_dssp             EEEEETTEEEEEEEECCTTSEEEEEETTTCCE----EEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS
T ss_pred             EecccCCcEeeEEEEECCCCEEEEEECCCCCE----eccccccccCcccccCCCCceeeccccCcCCCccEECcCccccc
Confidence            3333466   4 88899999999999876653    2222110           0111                      


Q ss_pred             --EEEEEccCCCEEEEEeC-------------------------------------------CCcEEEEECCCCccceEE
Q 013717          301 --NALALSDDGTVLFSGAC-------------------------------------------DRSILVWDREDSANHMVV  335 (437)
Q Consensus       301 --~~~~~~~~~~~l~~~~~-------------------------------------------dg~i~i~d~~~~~~~~~~  335 (437)
                        ..++++|++.++++...                                           .|.|..||+.+++.....
T Consensus       394 ~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~  473 (677)
T 1kb0_A          394 NWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSV  473 (677)
T ss_dssp             CSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEE
T ss_pred             CCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeec
Confidence              15788998888877543                                           278999999998766554


Q ss_pred             eeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecC-CCCCeeEEEEEccCCCCceEEEEEecC---
Q 013717          336 TGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEG-HTKPVKSLTAVTEEGQNGVVSVFSGSL---  411 (437)
Q Consensus       336 ~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~l~s~~~---  411 (437)
                      ........   ..+...+.+++.++.||.+++||.++++   .+..+.. +...-.-+.+..++.    ++++..+.   
T Consensus       474 ~~~~~~~~---g~~~~~g~~v~~g~~dg~l~a~D~~tG~---~lw~~~~~~~~~~~p~~y~~~G~----~~v~~~~G~~~  543 (677)
T 1kb0_A          474 EHVSPWNG---GTLTTAGNVVFQGTADGRLVAYHAATGE---KLWEAPTGTGVVAAPSTYMVDGR----QYVSVAVGWGG  543 (677)
T ss_dssp             EESSSCCC---CEEEETTTEEEEECTTSEEEEEETTTCC---EEEEEECSSCCCSCCEEEEETTE----EEEEEEECCCH
T ss_pred             CCCCCCcC---cceEeCCCEEEEECCCCcEEEEECCCCc---eeeeeeCCCCcccCCEEEEeCCE----EEEEEeccCCc
Confidence            32211111   2345567788889999999999999988   5555543 322334455666664    35655333   


Q ss_pred             -------------CCcEEEEeecc
Q 013717          412 -------------DGEIRAWQVSV  422 (437)
Q Consensus       412 -------------dg~i~iw~~~~  422 (437)
                                   .+.+..|.+..
T Consensus       544 ~~~~~~~~~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          544 VYGLAARATERQGPGTVYTFVVGG  567 (677)
T ss_dssp             HHHHHCCSCSCCCCCEEEEEEETC
T ss_pred             cccccccccccCCCCeEEEEeccc
Confidence                         47889999874

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.27  E-value=1.5e-08  Score=98.77  Aligned_cols=327  Identities=12%  Similarity=0.058  Sum_probs=179.4

Q ss_pred             cccccCCCceeEEecCCCcceeeeecCccC----------Ce-EEEEeeCCEEEEEecC-eEEEEeCCCCceeeeecccc
Q 013717           70 SLQKLSPDETINFSSASHLCINSVQLGHKL----------PI-GCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFND  137 (437)
Q Consensus        70 ~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~----------~V-~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~  137 (437)
                      .+...+.++.+..+|.......-..-.+..          .+ ..+++.+..++.++.+ .|..+|.++++..-......
T Consensus        72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~  151 (689)
T 1yiq_A           72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRA  151 (689)
T ss_dssp             EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCS
T ss_pred             EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecCcC
Confidence            344456677788888765443332221111          11 2244567888889888 99999999874332222110


Q ss_pred             CCCCcccEE-EEEEeCCeEEEEe------cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEe--eccceee
Q 013717          138 NDSSSGSVK-SVTFCDGKIFTAH------QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVR--RHKKKLW  208 (437)
Q Consensus       138 ~~~h~~~v~-~l~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  208 (437)
                      .......+. +-...++.++.++      .+|.|..||..+++........+.......   .. ..+...  ......+
T Consensus       152 ~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~---~~-~~~~~~~~~~~g~~w  227 (689)
T 1yiq_A          152 DHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPP---EG-KGMEIAAKTWFGDAY  227 (689)
T ss_dssp             CTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC---CS-HHHHHHHTTCCSSTH
T ss_pred             CCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccc---cc-ccccccccccCCcee
Confidence            000001111 1122356666554      378999999999987655543221100000   00 000000  0000000


Q ss_pred             ---ecCCCcEEEEEeCC--CeEEEEECCCc-------------------EEEEECCCcceEEEeec--cc-------ccE
Q 013717          209 ---IEHGDAVTGLAVNN--GLIYSVSWDKS-------------------LKIWRASDLRCLESIKA--HE-------DAV  255 (437)
Q Consensus       209 ---~~~~~~v~~~~~~~--~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~--~~-------~~v  255 (437)
                         .++......+++++  +.++.+..++.                   |..+|.++++.+..++.  |.       ...
T Consensus       228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~  307 (689)
T 1yiq_A          228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM  307 (689)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred             eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence               01111122456665  77888877753                   99999999999988763  21       122


Q ss_pred             EEEEEecCCe----EEEEeCCCeEEEecCCCCcccceee-------EEee-----------------Cccc---------
Q 013717          256 NAVAVSAGGT----VYTGSADRKIRVWAKPFNEKRHALI-------ATLE-----------------KHKS---------  298 (437)
Q Consensus       256 ~~~~~~~~~~----l~~~~~dg~v~iwd~~~~~~~~~~~-------~~~~-----------------~~~~---------  298 (437)
                      .......+|+    ++.++.+|.++++|..+++......       ..+.                 ....         
T Consensus       308 ~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~G  387 (689)
T 1yiq_A          308 ILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWG  387 (689)
T ss_dssp             EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTC
T ss_pred             EEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCccc
Confidence            2222233553    7888999999999987665321100       0000                 0000         


Q ss_pred             --cEEEEEEccCCCEEEEEeC---------------------------------------------CCcEEEEECCCCcc
Q 013717          299 --AVNALALSDDGTVLFSGAC---------------------------------------------DRSILVWDREDSAN  331 (437)
Q Consensus       299 --~i~~~~~~~~~~~l~~~~~---------------------------------------------dg~i~i~d~~~~~~  331 (437)
                        .-..++|+|+..++++...                                             +|.|+.||+.+++.
T Consensus       388 g~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~  467 (689)
T 1yiq_A          388 AHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA  467 (689)
T ss_dssp             SSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEE
T ss_pred             ccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCe
Confidence              0113788888887776532                                             47899999999886


Q ss_pred             ceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCC-CeeEEEEEccCCCCceEEEEEec
Q 013717          332 HMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTK-PVKSLTAVTEEGQNGVVSVFSGS  410 (437)
Q Consensus       332 ~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~~~~~l~s~~  410 (437)
                      ............   -.+...+.+++.|+.||.|+.||.++++   .+..++...+ .-.-+.|..++.    +|++..+
T Consensus       468 ~W~~~~~~~~~~---g~~~tagglvf~gt~dg~l~a~D~~tG~---~lw~~~~~~~~~~~p~ty~~~G~----qyv~~~~  537 (689)
T 1yiq_A          468 AWEVPYVTIFNG---GTLSTAGNLVFEGSADGRVIAYAADTGE---KLWEQPAASGVMAAPVTYSVDGE----QYVTFMA  537 (689)
T ss_dssp             EEEEEESSSCCC---CEEEETTTEEEEECTTSEEEEEETTTCC---EEEEEECSSCCCSCCEEEEETTE----EEEEEEE
T ss_pred             EeEccCCCCccC---ccceECCCEEEEECCCCcEEEEECCCCc---cceeeeCCCCcccCceEEEECCE----EEEEEEe
Confidence            655432211111   2445567799999999999999999988   5655554322 224466777765    3666553

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.24  E-value=1.2e-09  Score=108.04  Aligned_cols=199  Identities=10%  Similarity=0.001  Sum_probs=128.9

Q ss_pred             CCCcEEEEEeCC--CeEEEEECC-----CcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCe--------
Q 013717          211 HGDAVTGLAVNN--GLIYSVSWD-----KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRK--------  274 (437)
Q Consensus       211 ~~~~v~~~~~~~--~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~--------  274 (437)
                      |...+..++|+|  ++|+.+..+     ..|++||+.+++.+... .+...+..++|+|| + |+.++.++.        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            334678899998  677766543     35999999999876542 12222357899999 7 877776553        


Q ss_pred             ------EEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC-----cEEEEECCCCcc--ceEEeeeecc
Q 013717          275 ------IRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR-----SILVWDREDSAN--HMVVTGALRG  341 (437)
Q Consensus       275 ------v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~--~~~~~~~~~~  341 (437)
                            |.+|++.+.......+.....+...+..+.|+|||++|+..+.++     .|++||+.++..  ...+..   .
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~---~  315 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP---D  315 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC---S
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC---C
Confidence                  889988655433333333333334588999999999988877544     899999977521  222221   1


Q ss_pred             cccceEEEEeeCCEEEEEeCC----CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEE
Q 013717          342 HGKAILCLINVAGLLMSGSAD----RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRA  417 (437)
Q Consensus       342 ~~~~i~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  417 (437)
                      .......+..+++.|+..+.+    +.|.+||+.++. ......+..+...+..+++.. +     .++++...||..+|
T Consensus       316 ~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~~-~-----~lv~~~~~dg~~~l  388 (741)
T 1yr2_A          316 LKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIAG-N-----RLFASYIHDAKSQV  388 (741)
T ss_dssp             SSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEEB-T-----EEEEEEEETTEEEE
T ss_pred             CCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEEC-C-----EEEEEEEECCEEEE
Confidence            122233345677877766653    459999988742 122333444555677777773 2     48899999999888


Q ss_pred             Eeec
Q 013717          418 WQVS  421 (437)
Q Consensus       418 w~~~  421 (437)
                      |.++
T Consensus       389 ~~~~  392 (741)
T 1yr2_A          389 LAFD  392 (741)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8776

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.23  E-value=1.4e-08  Score=92.62  Aligned_cols=232  Identities=9%  Similarity=0.027  Sum_probs=142.7

Q ss_pred             CCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCC--eEEEEeCCC
Q 013717           99 LPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDC--KIRVWQLTP  171 (437)
Q Consensus        99 ~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg--~i~iwd~~~  171 (437)
                      .....|+++  ++++++...+ .|++||.+++....+...      ..... ++|+++.  |+.+..++  .|.+|+...
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~------~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~  203 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG------FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS  203 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET------CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGG
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc------CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCC
Confidence            467789998  6666666666 999999998644433321      12223 8888654  77777655  788888765


Q ss_pred             CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEE--
Q 013717          172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLES--  247 (437)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~--  247 (437)
                      +.....+....                          ......+.++++++  ..|+.+..++.|+.||..++.....  
T Consensus       204 ~~~~~~~g~~~--------------------------~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~  257 (409)
T 3hrp_A          204 GWAPTRIGQLG--------------------------STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQ  257 (409)
T ss_dssp             TTCEEEEEECC--------------------------TTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEE
T ss_pred             CceeEEeeecc--------------------------chhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEec
Confidence            43211110000                          01334567788887  6777777889999999987754322  


Q ss_pred             --eecccccE--EEEEEec-CCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCc---------------cccEEEEEEc
Q 013717          248 --IKAHEDAV--NAVAVSA-GGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKH---------------KSAVNALALS  306 (437)
Q Consensus       248 --~~~~~~~v--~~~~~~~-~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~---------------~~~i~~~~~~  306 (437)
                        ..+....-  ..++|+| ++. +++-..++.|+.|+....      ...+.++               -.....++++
T Consensus       258 ~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d  331 (409)
T 3hrp_A          258 LELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE------CEWFCGSATQKTVQDGLREEALFAQPNGMTVD  331 (409)
T ss_dssp             CCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEEC
T ss_pred             ccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEe
Confidence              11222222  3899999 466 566667889999987532      1122111               2347899999


Q ss_pred             cCCCEEEEEe-CCCcEEEEECCCCccceEEeee--ecc---------cccceEEEEeeCC--EEEEEeCCCcEEEeeC
Q 013717          307 DDGTVLFSGA-CDRSILVWDREDSANHMVVTGA--LRG---------HGKAILCLINVAG--LLMSGSADRTVRIWQR  370 (437)
Q Consensus       307 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~--~~~---------~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~  370 (437)
                      ++|+++++-. .++.|+.|++.++.. ..+...  ..+         .-.....++++++  ++++-..++.|+.+++
T Consensus       332 ~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          332 EDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            9999777777 789999999766542 222211  000         0123456666543  5555666677777664

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.21  E-value=2.9e-08  Score=88.24  Aligned_cols=262  Identities=13%  Similarity=0.062  Sum_probs=158.9

Q ss_pred             CceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEe----------cC-eEEEEeCCCCceeeeeccccCCC--
Q 013717           77 DETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAAS----------SH-EINVYDRTGTTWTSINTFNDNDS--  140 (437)
Q Consensus        77 dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~----------~d-~v~vwd~~~~~~~~~~~~~~~~~--  140 (437)
                      ++.+.+.|.......-..- |.. + . ++++  |++|+.+.          .+ .|.+||..+.  +.+..+....+  
T Consensus        58 ~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~--~v~~~I~v~~g~r  132 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL--LPTADIELPDAPR  132 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--CEEEEEEETTCCC
T ss_pred             CCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--eEEEEEECCCccc
Confidence            5788898887654443333 443 3 3 8888  88777765          24 8999999995  33443321110  


Q ss_pred             --CcccEEEEEEeCCe--EEEEec--CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCc
Q 013717          141 --SSGSVKSVTFCDGK--IFTAHQ--DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA  214 (437)
Q Consensus       141 --h~~~v~~l~~~~~~--l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (437)
                        .......+.+++++  ++.+..  ++.|.++|+.+++....+..                               .+ 
T Consensus       133 ~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v-------------------------------~g-  180 (386)
T 3sjl_D          133 FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV-------------------------------PD-  180 (386)
T ss_dssp             CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-------------------------------CS-
T ss_pred             cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC-------------------------------CC-
Confidence              12245678999765  555543  68999999999875554421                               01 


Q ss_pred             EEEE-EeCCCeEEEEECCCcEEEEECCC-cceEEEeecc----cccEE-EEEEe-cCCeEEEEeCCCeEEEecCCCCccc
Q 013717          215 VTGL-AVNNGLIYSVSWDKSLKIWRASD-LRCLESIKAH----EDAVN-AVAVS-AGGTVYTGSADRKIRVWAKPFNEKR  286 (437)
Q Consensus       215 v~~~-~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~----~~~v~-~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~  286 (437)
                      ...+ ....+.+++.+.||.+.+.++.+ ++........    ...+. ...|. ++|+++..+.+|.|.++|+..... 
T Consensus       181 ~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~-  259 (386)
T 3sjl_D          181 CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-  259 (386)
T ss_dssp             EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-
T ss_pred             cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcc-
Confidence            1111 11226777888999999999976 5553322111    12221 23553 688866678899999999865432 


Q ss_pred             ceeeEEee---------C-ccccEEEEEEccCCCEEEEEeC----------CCcEEEEECCCCccceEEeeeecccccce
Q 013717          287 HALIATLE---------K-HKSAVNALALSDDGTVLFSGAC----------DRSILVWDREDSANHMVVTGALRGHGKAI  346 (437)
Q Consensus       287 ~~~~~~~~---------~-~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i  346 (437)
                       +....+.         + .......++++++++.++....          .+.|.++|+.+.+....+.   .++...-
T Consensus       260 -~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~---vg~~~~~  335 (386)
T 3sjl_D          260 -KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE---MGHEIDS  335 (386)
T ss_dssp             -EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE---EEEEECE
T ss_pred             -eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE---CCCCcce
Confidence             1222221         0 1123335777999998888653          2579999999877443332   2222223


Q ss_pred             EEEEeeCC-EEEEE-eCCCcEEEeeCCCCCCeeeeeeec
Q 013717          347 LCLINVAG-LLMSG-SADRTVRIWQRGSDGRFGCLAVLE  383 (437)
Q Consensus       347 ~~~~~~~~-~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~  383 (437)
                      ..++.++. +|++. ..++.|.++|..+++   .+.++.
T Consensus       336 lavs~D~~~~ly~tn~~~~~VsViD~~t~k---~~~~i~  371 (386)
T 3sjl_D          336 INVSQDEKPLLYALSTGDKTLYIHDAESGE---ELRSVN  371 (386)
T ss_dssp             EEECSSSSCEEEEEETTTTEEEEEETTTCC---EEEEEC
T ss_pred             EEECCCCCeEEEEEcCCCCeEEEEECCCCc---EEEEec
Confidence            44555554 56654 458999999999877   555554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.21  E-value=4e-07  Score=81.78  Aligned_cols=253  Identities=9%  Similarity=-0.031  Sum_probs=151.6

Q ss_pred             eeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEe----------cC-eEEEEeCCCCceeeeeccccC-CC---
Q 013717           79 TINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAAS----------SH-EINVYDRTGTTWTSINTFNDN-DS---  140 (437)
Q Consensus        79 ~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~----------~d-~v~vwd~~~~~~~~~~~~~~~-~~---  140 (437)
                      .+.++|..... .+..+ .-..+  .++++  |++|+.+.          .+ .|.+||..+.  +.+..+... ..   
T Consensus        48 ~v~v~D~~t~~-~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~--~~~~~i~~~~~~~~~  122 (373)
T 2mad_H           48 QQWVLDAGSGS-ILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFD  122 (373)
T ss_pred             EEEEEECCCCe-EEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC--cEEEEEECCCccccc
Confidence            77888886644 34445 22233  88888  88888875          24 8999999874  333333211 00   


Q ss_pred             CcccEEEEEEeCCe--EEEEec--CCeEEEEeCCCCccccc-ccccCccccceeeecCCCCeeEEeeccceeeecCCCcE
Q 013717          141 SSGSVKSVTFCDGK--IFTAHQ--DCKIRVWQLTPTKHHKL-KTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV  215 (437)
Q Consensus       141 h~~~v~~l~~~~~~--l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  215 (437)
                      +......+.++|++  |+.+..  ++.|.++| .+++.... +.                               ....+
T Consensus       123 ~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~-------------------------------~~~~~  170 (373)
T 2mad_H          123 VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS-------------------------------SPTCY  170 (373)
T ss_pred             cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC-------------------------------CCceE
Confidence            11345688999765  666653  57899999 88765433 21                               11112


Q ss_pred             EEEEeCCCeEEEEECCCcEEEEECCCcceEEEee-----cccccE-EEEEEecCCe-EEEEeCCCeEEEecCCCCcccce
Q 013717          216 TGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIK-----AHEDAV-NAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHA  288 (437)
Q Consensus       216 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v-~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~  288 (437)
                      ......+..+++.+.||.+.++|. +++......     ....++ ....+.+++. ++..+.++.+.+.|+.....  .
T Consensus       171 ~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~--~  247 (373)
T 2mad_H          171 HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA--T  247 (373)
T ss_pred             EEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc--e
Confidence            112222356677788999999999 887664322     111121 2344556554 55555788999998864321  1


Q ss_pred             eeEEeeC----------ccccEEEEEEccCCCEEEEEeC----------CCcEEEEECCCCccceEEeeeecccccceEE
Q 013717          289 LIATLEK----------HKSAVNALALSDDGTVLFSGAC----------DRSILVWDREDSANHMVVTGALRGHGKAILC  348 (437)
Q Consensus       289 ~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~  348 (437)
                      .+..+..          .......+.++|+++.++++..          ++.|.++|+.+.+....+   ..++...-..
T Consensus       248 v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i---~~g~~p~~i~  324 (373)
T 2mad_H          248 NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI---SLGHDVDAIS  324 (373)
T ss_pred             EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEE---ECCCCcCeEE
Confidence            1222211          1223445789999998887653          357999999877643322   1222233344


Q ss_pred             EEeeCC-EEEEEe-CCCcEEEeeCCCCC
Q 013717          349 LINVAG-LLMSGS-ADRTVRIWQRGSDG  374 (437)
Q Consensus       349 ~~~~~~-~l~~~~-~dg~i~iwd~~~~~  374 (437)
                      ++.+++ +++++. .++.|.+||..+.+
T Consensus       325 ~s~Dg~~~l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          325 VAQDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             ECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence            455566 677776 58999999999877

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.21  E-value=2.4e-09  Score=104.08  Aligned_cols=284  Identities=14%  Similarity=0.130  Sum_probs=167.3

Q ss_pred             eCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCC------cccEEEEEEeCCeEEEEecCCeEEEEeCCCCccccccc
Q 013717          107 HHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSS------SGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKT  179 (437)
Q Consensus       107 ~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h------~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  179 (437)
                      .+..|+.++.+ .|..+|..+++..=..........      ......+++.++.++.++.|+.|..+|..+++......
T Consensus        76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~  155 (677)
T 1kb0_A           76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQN  155 (677)
T ss_dssp             ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence            46777777777 899999988643222221100000      00112455667789999999999999999998655443


Q ss_pred             ccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEEC------CCcEEEEECCCcceEEEeecccc
Q 013717          180 TLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSW------DKSLKIWRASDLRCLESIKAHED  253 (437)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~  253 (437)
                      ........                    ......++    +..+.+++++.      +|.|+.||..+++.+..+.....
T Consensus       156 ~~~~~~~~--------------------~~~~~~p~----v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~  211 (677)
T 1kb0_A          156 TFEGQKGS--------------------LTITGAPR----VFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPG  211 (677)
T ss_dssp             TTTTCCSS--------------------CBCCSCCE----EETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC
T ss_pred             CCcCcCcC--------------------cccccCcE----EECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCC
Confidence            21000000                    00011111    22355565553      79999999999999887763211


Q ss_pred             c--------------------------------EEEEEEecCCe-EEEEeCCC-------------------eEEEecCC
Q 013717          254 A--------------------------------VNAVAVSAGGT-VYTGSADR-------------------KIRVWAKP  281 (437)
Q Consensus       254 ~--------------------------------v~~~~~~~~~~-l~~~~~dg-------------------~v~iwd~~  281 (437)
                      .                                ...++++|++. ++.+..++                   .|..+|.+
T Consensus       212 ~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~  291 (677)
T 1kb0_A          212 DPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPD  291 (677)
T ss_dssp             CTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT
T ss_pred             CccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECC
Confidence            1                                12467788766 77776654                   48888887


Q ss_pred             CCcccceeeEEeeCc-------cccEEEEEEccCC---CEEEEEeCCCcEEEEECCCCccceEEeeeecc-------ccc
Q 013717          282 FNEKRHALIATLEKH-------KSAVNALALSDDG---TVLFSGACDRSILVWDREDSANHMVVTGALRG-------HGK  344 (437)
Q Consensus       282 ~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~  344 (437)
                      ++...+...  ...|       ......+....+|   ..++.++.+|.++++|.++++...........       ...
T Consensus       292 TG~~~W~~~--~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~  369 (677)
T 1kb0_A          292 TGKYKWHYQ--ETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGK  369 (677)
T ss_dssp             TCCEEEEEE--SSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSC
T ss_pred             CCCEEEEEe--cCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCc
Confidence            665333221  1112       1223333444577   68999999999999999998765443211000       000


Q ss_pred             ce------------------------EEEEee--CCEEEEEeC-------------------------------------
Q 013717          345 AI------------------------LCLINV--AGLLMSGSA-------------------------------------  361 (437)
Q Consensus       345 ~i------------------------~~~~~~--~~~l~~~~~-------------------------------------  361 (437)
                      .+                        ..++++  ..++++...                                     
T Consensus       370 ~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~  449 (677)
T 1kb0_A          370 PIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAE  449 (677)
T ss_dssp             EEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSS
T ss_pred             eeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccc
Confidence            00                        023344  345555432                                     


Q ss_pred             ------CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          362 ------DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       362 ------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                            .|.|..||+.+++   .+.... +..++....+...++     +++.++.||.+++||.++++.
T Consensus       450 ~~~~~~~g~l~A~D~~tG~---~~W~~~-~~~~~~~g~~~~~g~-----~v~~g~~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          450 PPKSKPFGRLLAWDPVAQK---AAWSVE-HVSPWNGGTLTTAGN-----VVFQGTADGRLVAYHAATGEK  510 (677)
T ss_dssp             CCCSCCEEEEEEEETTTTE---EEEEEE-ESSSCCCCEEEETTT-----EEEEECTTSEEEEEETTTCCE
T ss_pred             cCCCCCccEEEEEeCCCCc---EEeecC-CCCCCcCcceEeCCC-----EEEEECCCCcEEEEECCCCce
Confidence                  2779999999877   343433 333455555666554     678889999999999998875

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.20  E-value=6e-09  Score=101.49  Aligned_cols=284  Identities=14%  Similarity=0.093  Sum_probs=163.8

Q ss_pred             eCCEEEEEecC-eEEEEeCCCCceeeeeccccCCC----Cc-cc-EEEEEEeCCeEEEEecCCeEEEEeCCCCccccccc
Q 013717          107 HHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDS----SS-GS-VKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKT  179 (437)
Q Consensus       107 ~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~----h~-~~-v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  179 (437)
                      .+..|+.++.+ .|..+|..+++..=.........    .. .. -..+.+.++.++.++.|+.|..+|..+++......
T Consensus        69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~  148 (689)
T 1yiq_A           69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVD  148 (689)
T ss_dssp             ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeec
Confidence            47777778777 99999998864322222110000    00 00 12345567789999999999999999998655443


Q ss_pred             ccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEE------CCCcEEEEECCCcceEEEeeccc-
Q 013717          180 TLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVS------WDKSLKIWRASDLRCLESIKAHE-  252 (437)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~-  252 (437)
                      .......                    .......++    +..+.++++.      .+|.|..||.++++.+..+.... 
T Consensus       149 ~~~~~~~--------------------~~~~~~sP~----v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~  204 (689)
T 1yiq_A          149 TRADHKR--------------------SYTITGAPR----VVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPG  204 (689)
T ss_dssp             CCSCTTS--------------------CCBCCSCCE----EETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC
T ss_pred             CcCCCCC--------------------CccccCCcE----EECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCC
Confidence            2100000                    000011111    1234555554      37899999999999988775210 


Q ss_pred             ------------------------------ccEEEEEEecCCe-EEEEeCCCe-------------------EEEecCCC
Q 013717          253 ------------------------------DAVNAVAVSAGGT-VYTGSADRK-------------------IRVWAKPF  282 (437)
Q Consensus       253 ------------------------------~~v~~~~~~~~~~-l~~~~~dg~-------------------v~iwd~~~  282 (437)
                                                    .....++++|++. ++.++.++.                   |..+|.++
T Consensus       205 ~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T  284 (689)
T 1yiq_A          205 DPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT  284 (689)
T ss_dssp             CTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT
T ss_pred             CcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC
Confidence                                          0012567888665 778877764                   99999887


Q ss_pred             CcccceeeEEeeCc-------cccEEEEEEccCCC---EEEEEeCCCcEEEEECCCCccceEEeeee-------------
Q 013717          283 NEKRHALIATLEKH-------KSAVNALALSDDGT---VLFSGACDRSILVWDREDSANHMVVTGAL-------------  339 (437)
Q Consensus       283 ~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------  339 (437)
                      +...+...  ...|       ..++.......+|+   .++.++.+|.++++|.++++.........             
T Consensus       285 G~~~W~~~--~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~  362 (689)
T 1yiq_A          285 GEYVWHYQ--TTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGR  362 (689)
T ss_dssp             CCEEEEEE--SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTE
T ss_pred             CceeEeee--cCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCC
Confidence            65433221  1112       12222223333665   78899999999999999987543211000             


Q ss_pred             -----------cccccce-----------EEEEeeC--CEEEEEeC----------------------------------
Q 013717          340 -----------RGHGKAI-----------LCLINVA--GLLMSGSA----------------------------------  361 (437)
Q Consensus       340 -----------~~~~~~i-----------~~~~~~~--~~l~~~~~----------------------------------  361 (437)
                                 ......+           ..+++++  .++++...                                  
T Consensus       363 pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~  442 (689)
T 1yiq_A          363 PILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEG  442 (689)
T ss_dssp             EEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSS
T ss_pred             cccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcc
Confidence                       0000000           0133333  35554421                                  


Q ss_pred             -----------CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          362 -----------DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       362 -----------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                                 +|.|+.||+.+++   .+.....+. ++..-.+...++     +++.++.||.|+.||.++++.
T Consensus       443 ~~~~~~~~~~~~g~l~A~D~~tG~---~~W~~~~~~-~~~~g~~~tagg-----lvf~gt~dg~l~a~D~~tG~~  508 (689)
T 1yiq_A          443 AEGLLEMAKSWSGKLIAWDPVKQQ---AAWEVPYVT-IFNGGTLSTAGN-----LVFEGSADGRVIAYAADTGEK  508 (689)
T ss_dssp             HHHHHHHHTTCEEEEEEEETTTTE---EEEEEEESS-SCCCCEEEETTT-----EEEEECTTSEEEEEETTTCCE
T ss_pred             cccCCCCCCCcceeEEEEECCCCC---eEeEccCCC-CccCccceECCC-----EEEEECCCCcEEEEECCCCcc
Confidence                       3779999999887   444444332 333334555543     788899999999999999875

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.19  E-value=5.1e-09  Score=94.72  Aligned_cols=268  Identities=8%  Similarity=-0.017  Sum_probs=161.1

Q ss_pred             CeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEe----------cCCeEEEEeCCCCcccccccccCcc
Q 013717          117 HEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAH----------QDCKIRVWQLTPTKHHKLKTTLPTV  184 (437)
Q Consensus       117 d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~  184 (437)
                      +.|.++|..+.  +.+..+..   -..+  .+.+++++  ++.+.          .++.|.++|..+.+....+..-...
T Consensus        99 ~~VsVID~~t~--~vv~~I~v---G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~  171 (426)
T 3c75_H           99 TQQFVIDGSTG--RILGMTDG---GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP  171 (426)
T ss_dssp             EEEEEEETTTT--EEEEEEEE---CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred             CeEEEEECCCC--EEEEEEEC---CCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc
Confidence            48999999995  44555432   1233  89999776  55554          4678999999988755443210000


Q ss_pred             ccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC--CCcEEEEECCCcceEEEeecccccEEEEEE
Q 013717          185 NDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW--DKSLKIWRASDLRCLESIKAHEDAVNAVAV  260 (437)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  260 (437)
                                           .  .........+.+++  ++++++..  ++.|.+.|+.+++.+..+....  .  ...
T Consensus       172 ---------------------r--~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~  224 (426)
T 3c75_H          172 ---------------------R--FLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHI  224 (426)
T ss_dssp             ---------------------C--CCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEE
T ss_pred             ---------------------c--cccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eee
Confidence                                 0  00011233567777  77887764  5889999999999988886322  1  233


Q ss_pred             ecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccE-EEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEee
Q 013717          261 SAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAV-NALALSDDGTVLFSGACDRSILVWDREDSANHMVVTG  337 (437)
Q Consensus       261 ~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  337 (437)
                      .|++.  +++.+.||.+.+.+...+.........+.....++ ..+.|.+++..++.....+.|.+.|+...........
T Consensus       225 ~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~  304 (426)
T 3c75_H          225 FPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPI  304 (426)
T ss_dssp             EEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCE
T ss_pred             ccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeee
Confidence            44443  67777888888887733321100000111111111 2356789988887778889999999865432110000


Q ss_pred             ee----------cccccceEEEEeeCCEEEEEeC----------CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc
Q 013717          338 AL----------RGHGKAILCLINVAGLLMSGSA----------DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE  397 (437)
Q Consensus       338 ~~----------~~~~~~i~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~  397 (437)
                      ..          .........+..+++.+++...          ++.|.++|..+.+   .+.++... ....+|+|+|+
T Consensus       305 ~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k---vv~~I~vg-~~P~gia~spD  380 (426)
T 3c75_H          305 EALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE---RINKIELG-HEIDSINVSQD  380 (426)
T ss_dssp             ESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---EEEEEEEE-EEECEEEECCS
T ss_pred             eeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe---EEEEEECC-CCcCeEEEccC
Confidence            00          0111122466666665555432          3579999999977   44444321 25789999999


Q ss_pred             CCCCceEEEEEec-CCCcEEEEeeccCCCC
Q 013717          398 EGQNGVVSVFSGS-LDGEIRAWQVSVSCPN  426 (437)
Q Consensus       398 ~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~  426 (437)
                      +..    +++++. .++.|.++|+.+.+..
T Consensus       381 g~~----~lyv~n~~s~~VsVID~~t~kvv  406 (426)
T 3c75_H          381 AEP----LLYALSAGTQTLHIYDAATGEEL  406 (426)
T ss_dssp             SSC----EEEEEETTTTEEEEEETTTCCEE
T ss_pred             CCE----EEEEEcCCCCeEEEEECCCCCEE
Confidence            853    455555 6999999999988754

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.18  E-value=9.6e-10  Score=97.50  Aligned_cols=256  Identities=14%  Similarity=0.126  Sum_probs=159.6

Q ss_pred             EEEEee-CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC-eEEEEecCCeEEEEeCCCCcccccc
Q 013717          102 GCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG-KIFTAHQDCKIRVWQLTPTKHHKLK  178 (437)
Q Consensus       102 ~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~  178 (437)
                      .+.... +..|+.++.+ .|..|| .+++.  ....   ......+.++...++ .++.++.+  |..+|. +++.....
T Consensus        23 ~~~~~d~~g~l~v~t~~~~l~~~d-~~g~~--~~~~---~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~   93 (330)
T 3hxj_A           23 SSPILAKNGTIYLGSSNKNLYAIN-TDGSV--KWFF---KSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRF   93 (330)
T ss_dssp             CCCEECTTSCEECSSTTTTTEEEC-TTSCE--EESS---CGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGS
T ss_pred             cCceEccCCeEEEEcCCCEEEEEC-CCCcE--EEEE---ecCCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEE
Confidence            344454 6667777777 899999 66533  2222   123445677777644 46666655  888886 44433222


Q ss_pred             cccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEeecccccEEEE
Q 013717          179 TTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAV  258 (437)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  258 (437)
                      ..                              .........+..+.++.++.++.|..+|.. ++...........+.++
T Consensus        94 ~~------------------------------~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~  142 (330)
T 3hxj_A           94 DT------------------------------KKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATP  142 (330)
T ss_dssp             CC-----------------------------------CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred             EC------------------------------CCCcccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeee
Confidence            11                              011111122236778888889999999988 77777666555566777


Q ss_pred             EEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeee
Q 013717          259 AVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGA  338 (437)
Q Consensus       259 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  338 (437)
                      ...+++.++.++.++.|..||.. +.    ....+......+.++...++|.+.+ ++  +.|..+| .+++.....   
T Consensus       143 ~~~~~g~l~vgt~~~~l~~~d~~-g~----~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~---  210 (330)
T 3hxj_A          143 IVSEDGTIYVGSNDNYLYAINPD-GT----EKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNF---  210 (330)
T ss_dssp             EECTTSCEEEECTTSEEEEECTT-SC----EEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEE---
T ss_pred             EEcCCCEEEEEcCCCEEEEECCC-CC----EeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEE---
Confidence            77778889899999999999875 32    3334444455666777777887554 44  7799999 555433222   


Q ss_pred             ecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEE
Q 013717          339 LRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRA  417 (437)
Q Consensus       339 ~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  417 (437)
                       ......+.++..+++ .|..++.++.|..+|.. ++   .+..+......+..+...+++      .|..++.+|.|..
T Consensus       211 -~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~-g~---~~~~~~~~~~~~~~~~~~~~g------~l~v~t~~ggl~~  279 (330)
T 3hxj_A          211 -YAGYWTVTRPAISEDGTIYVTSLDGHLYAINPD-GT---EKWRFKTGKRIESSPVIGNTD------TIYFGSYDGHLYA  279 (330)
T ss_dssp             -CCSSCCCSCCEECTTSCEEEEETTTEEEEECTT-SC---EEEEEECSSCCCSCCEECTTS------CEEEECTTCEEEE
T ss_pred             -ccCCcceeceEECCCCeEEEEcCCCeEEEECCC-CC---EeEEeeCCCCccccceEcCCC------eEEEecCCCCEEE
Confidence             223344556666655 77788888889988743 33   334444334444455554444      4777888888888


Q ss_pred             Eee
Q 013717          418 WQV  420 (437)
Q Consensus       418 w~~  420 (437)
                      +|.
T Consensus       280 ~d~  282 (330)
T 3hxj_A          280 INP  282 (330)
T ss_dssp             ECT
T ss_pred             ECC
Confidence            885

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.16  E-value=7.7e-07  Score=88.77  Aligned_cols=291  Identities=8%  Similarity=0.119  Sum_probs=180.4

Q ss_pred             ccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeeccc--cCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCC
Q 013717           97 HKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTFN--DNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTP  171 (437)
Q Consensus        97 h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~--~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~  171 (437)
                      +...|.++... ...|..|+.+ -+.+||..+++......-.  ...-....|.++...+++ |..|+.+ -|.+|+..+
T Consensus       213 ~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~  291 (795)
T 4a2l_A          213 GTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGT  291 (795)
T ss_dssp             -CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTT
T ss_pred             CCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCC
Confidence            45678888887 5666667765 8999999876444332210  001124679999988555 7777766 588899876


Q ss_pred             CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEee-
Q 013717          172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIK-  249 (437)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-  249 (437)
                      ++......... ...                      .-....|.++..++ +.|..|+.++-|..|+..+.+...... 
T Consensus       292 ~~~~~~~~~~~-~~~----------------------~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~  348 (795)
T 4a2l_A          292 DSFASYSSNPV-ENG----------------------SLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNI  348 (795)
T ss_dssp             TEEEEECCCTT-STT----------------------SCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCC
T ss_pred             CeEEEEecCCC-CCC----------------------CCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCC
Confidence            64322111000 000                      01346799999988 888899988889999876654332211 


Q ss_pred             -----cccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEe------eCccccEEEEEEccCCCEEEEEeCC
Q 013717          250 -----AHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATL------EKHKSAVNALALSDDGTVLFSGACD  318 (437)
Q Consensus       250 -----~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~d  318 (437)
                           .....|.++...++|.|..|+.++-|..||.....-  ......      ......|.++...++|+.|..|+.+
T Consensus       349 ~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~  426 (795)
T 4a2l_A          349 PYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRF--TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHA  426 (795)
T ss_dssp             TTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCE--EEECCC------CCSCSCEEEEEEETTTTEEEEEETT
T ss_pred             CCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcE--EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCc
Confidence                 124569999999999999999998899998654321  111000      0123578999998888857777777


Q ss_pred             CcEEEEECCCCccceEEee-eecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeee----cCCCCCeeEE
Q 013717          319 RSILVWDREDSANHMVVTG-ALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVL----EGHTKPVKSL  392 (437)
Q Consensus       319 g~i~i~d~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~~l  392 (437)
                      +-|.+||..+++... +.. ........|.++..+.+ .|..|+.+ -|.+||..+++ +..+...    .-....|.++
T Consensus       427 ~Gl~~~d~~~~~~~~-~~~~~~~l~~~~v~~i~~d~~g~lwigt~~-Gl~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~i  503 (795)
T 4a2l_A          427 GGLSILHRNSGQVEN-FNQRNSQLVNENVYAILPDGEGNLWLGTLS-ALVRFNPEQRS-FTTIEKEKDGTPVVSKQITTL  503 (795)
T ss_dssp             TEEEEEETTTCCEEE-ECTTTSCCSCSCEEEEEECSSSCEEEEESS-CEEEEETTTTE-EEECCBCTTCCBCCCCCEEEE
T ss_pred             CceeEEeCCCCcEEE-eecCCCCcCCCeeEEEEECCCCCEEEEecC-ceeEEeCCCCe-EEEccccccccccCCceEEEE
Confidence            779999987754211 110 00012456788877644 55556664 48899987643 2111111    1123578888


Q ss_pred             EEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          393 TAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       393 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      ...+++.      |..|+. +-|..|+...+
T Consensus       504 ~~d~~g~------lWigt~-~Gl~~~~~~~~  527 (795)
T 4a2l_A          504 FRDSHKR------LWIGGE-EGLSVFKQEGL  527 (795)
T ss_dssp             EECTTCC------EEEEES-SCEEEEEEETT
T ss_pred             EECCCCC------EEEEeC-CceEEEeCCCC
Confidence            8777663      444444 45888887654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.15  E-value=2.5e-08  Score=87.25  Aligned_cols=220  Identities=12%  Similarity=0.097  Sum_probs=130.6

Q ss_pred             cccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717          142 SGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL  218 (437)
Q Consensus       142 ~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  218 (437)
                      ........|+++.   +++...++.|..|+.. ++. ..                              +..+...+..+
T Consensus        44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~------------------------------~~~~~~~~~gl   91 (305)
T 3dr2_A           44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DV------------------------------LLDATAFTNGN   91 (305)
T ss_dssp             CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EE------------------------------EEESCSCEEEE
T ss_pred             CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EE------------------------------EeCCCCcccee
Confidence            3456678888543   6677778999999874 331 11                              12255678899


Q ss_pred             EeCC-CeEEEEE-CCCcEEEEECCCcceEEEeec----ccccEEEEEEecCCeEEE-----EeC-------------CCe
Q 013717          219 AVNN-GLIYSVS-WDKSLKIWRASDLRCLESIKA----HEDAVNAVAVSAGGTVYT-----GSA-------------DRK  274 (437)
Q Consensus       219 ~~~~-~~l~~~~-~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~~-----~~~-------------dg~  274 (437)
                      ++++ ..++++. .++.|.+||.. ++.......    ....+..+++.++|.+..     |..             .+.
T Consensus        92 ~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~  170 (305)
T 3dr2_A           92 AVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHS  170 (305)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEE
T ss_pred             eECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCe
Confidence            9988 4455555 45789999985 553322211    123467899999999555     332             256


Q ss_pred             EEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC------CcEEEEECCCCccceEEeeeecccccce--
Q 013717          275 IRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD------RSILVWDREDSANHMVVTGALRGHGKAI--  346 (437)
Q Consensus       275 v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~i--  346 (437)
                      |..||...+..  ..   +. .......++|+||++.|+.+...      +.|++|++.... ...............  
T Consensus       171 v~~~d~~~g~~--~~---~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdg  243 (305)
T 3dr2_A          171 VYRLPPDGSPL--QR---MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDG  243 (305)
T ss_dssp             EEEECSSSCCC--EE---EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCS
T ss_pred             EEEEcCCCCcE--EE---Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCe
Confidence            77776543321  11   11 33457889999999988877665      689999987543 111110011111222  


Q ss_pred             EEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCC
Q 013717          347 LCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDG  413 (437)
Q Consensus       347 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg  413 (437)
                      ..+..+++ |.++..+| |.+|+.. ++   .+..+..+. .+.+++|.++++     .|+.++.++
T Consensus       244 i~~d~~G~-lwv~~~~g-v~~~~~~-g~---~~~~~~~~~-~~~~~~f~~d~~-----~L~it~~~~  298 (305)
T 3dr2_A          244 FCVDRGGW-LWSSSGTG-VCVFDSD-GQ---LLGHIPTPG-TASNCTFDQAQQ-----RLFITGGPC  298 (305)
T ss_dssp             EEECTTSC-EEECCSSE-EEEECTT-SC---EEEEEECSS-CCCEEEECTTSC-----EEEEEETTE
T ss_pred             EEECCCCC-EEEecCCc-EEEECCC-CC---EEEEEECCC-ceeEEEEeCCCC-----EEEEEcCCe
Confidence            33334455 44455554 9999985 33   455555444 588999997664     455555553

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.14  E-value=1e-07  Score=84.15  Aligned_cols=210  Identities=9%  Similarity=0.023  Sum_probs=128.3

Q ss_pred             eEEEEee---CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCccc
Q 013717          101 IGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHH  175 (437)
Q Consensus       101 V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~  175 (437)
                      ..+.+|+   +.++++...+ .|.+||.+++..... .      ....+.+++++++. ++.++.+ .|.+||..+++..
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~------~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~  122 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVH-A------LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLT  122 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-E------CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-E------CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEE
Confidence            4566777   3455666566 999999988643322 1      23578999998554 6666644 4999998876532


Q ss_pred             ccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEEC-------CCcEEEEECCCcceEEE
Q 013717          176 KLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSW-------DKSLKIWRASDLRCLES  247 (437)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~-------dg~i~iwd~~~~~~~~~  247 (437)
                      .... ...                         ......+.++++++ ..++.++.       .+.|..++  +++.. .
T Consensus       123 ~~~~-~~~-------------------------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~  173 (326)
T 2ghs_A          123 LHAE-LES-------------------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-K  173 (326)
T ss_dssp             EEEC-SST-------------------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-E
T ss_pred             EEee-CCC-------------------------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-E
Confidence            2111 000                         00124578899988 33444442       24566666  45433 3


Q ss_pred             eecccccEEEEEEecCCe-E-EEEeCCCeEEEecCC--CC-ccc-ceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcE
Q 013717          248 IKAHEDAVNAVAVSAGGT-V-YTGSADRKIRVWAKP--FN-EKR-HALIATLEKHKSAVNALALSDDGTVLFSGACDRSI  321 (437)
Q Consensus       248 ~~~~~~~v~~~~~~~~~~-l-~~~~~dg~v~iwd~~--~~-~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  321 (437)
                      +.........++|+|+++ + ++.+.++.|.+||+.  .+ ... ...+..+......+..++++++|++.++...++.|
T Consensus       174 ~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v  253 (326)
T 2ghs_A          174 LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAV  253 (326)
T ss_dssp             EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEE
T ss_pred             eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEE
Confidence            333344578999999997 5 444567899999975  22 111 12222333334567889999999887777677889


Q ss_pred             EEEECCCCccceEEeeeecccccceEEEEee
Q 013717          322 LVWDREDSANHMVVTGALRGHGKAILCLINV  352 (437)
Q Consensus       322 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~  352 (437)
                      .+||.. ++.    ...+..+...+.++++.
T Consensus       254 ~~~d~~-g~~----~~~i~~~~~~~~~~af~  279 (326)
T 2ghs_A          254 DRYDTD-GNH----IARYEVPGKQTTCPAFI  279 (326)
T ss_dssp             EEECTT-CCE----EEEEECSCSBEEEEEEE
T ss_pred             EEECCC-CCE----EEEEECCCCCcEEEEEe
Confidence            999983 432    22233344567888876

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.07  E-value=1.7e-08  Score=98.94  Aligned_cols=239  Identities=11%  Similarity=0.149  Sum_probs=140.3

Q ss_pred             CCcccEEEEEEeCCe--EEE-----EecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717          140 SSSGSVKSVTFCDGK--IFT-----AHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG  212 (437)
Q Consensus       140 ~h~~~v~~l~~~~~~--l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (437)
                      +|...+..++|+|++  |+.     |+....|++||+.+++.....  +.                           +. 
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~--~~---------------------------~~-  175 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP--LK---------------------------DV-  175 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE--EE---------------------------EE-
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc--cC---------------------------Cc-
Confidence            466688999999876  442     223357999999988643210  00                           00 


Q ss_pred             CcEEEEEe-CCCeEEEEECCC-------------cEEEEECCCcce----EEEeec-ccccEEEEEEecCCe-EE-EEeC
Q 013717          213 DAVTGLAV-NNGLIYSVSWDK-------------SLKIWRASDLRC----LESIKA-HEDAVNAVAVSAGGT-VY-TGSA  271 (437)
Q Consensus       213 ~~v~~~~~-~~~~l~~~~~dg-------------~i~iwd~~~~~~----~~~~~~-~~~~v~~~~~~~~~~-l~-~~~~  271 (437)
                       ....++| +.+.|+.+..+.             .|++|++.+...    +..... +...+..+.++|||+ |+ +...
T Consensus       176 -k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~  254 (693)
T 3iuj_A          176 -KFSGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAAN  254 (693)
T ss_dssp             -ESCCCEEETTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEES
T ss_pred             -eeccEEEeCCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEcc
Confidence             0112233 346666666653             499999877642    222223 344578899999998 43 3332


Q ss_pred             ---CCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CC---CcEEEEECCCCccc-eEEeeeecccc
Q 013717          272 ---DRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CD---RSILVWDREDSANH-MVVTGALRGHG  343 (437)
Q Consensus       272 ---dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d---g~i~i~d~~~~~~~-~~~~~~~~~~~  343 (437)
                         ...|.++|+......   ...+..+....... ++++|..|+..+ .+   +.|..+|+.++... ...   +..|.
T Consensus       255 ~~~~~~i~~~d~~~~~~~---~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~---l~~~~  327 (693)
T 3iuj_A          255 STSGNRLYVKDLSQENAP---LLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRD---LIPER  327 (693)
T ss_dssp             SSSCCEEEEEETTSTTCC---CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE---EECCC
T ss_pred             CCCCcEEEEEECCCCCCc---eEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEE---EecCC
Confidence               358999998654322   23344444444444 566666555443 33   67999999876431 111   22233


Q ss_pred             cceEEEEeeCCEEEEEeC-CC--cEEEeeCCCCCCeeeeeeec-CCCCCeeEEEEEccCCCCceEEEEEecCC---CcEE
Q 013717          344 KAILCLINVAGLLMSGSA-DR--TVRIWQRGSDGRFGCLAVLE-GHTKPVKSLTAVTEEGQNGVVSVFSGSLD---GEIR  416 (437)
Q Consensus       344 ~~i~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~l~s~~~d---g~i~  416 (437)
                      ..+..+++.++.|+.... ++  .|++|++..+.    ...+. .+.+.+..+.++++++.    ++++.+..   +.|+
T Consensus       328 ~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~----~~~l~~p~~~~~~~~~~~~d~~~----l~~~~ss~~tP~~l~  399 (693)
T 3iuj_A          328 QQVLTVHSGSGYLFAEYMVDATARVEQFDYEGKR----VREVALPGLGSVSGFNGKHDDPA----LYFGFENYAQPPTLY  399 (693)
T ss_dssp             SSCEEEEEETTEEEEEEEETTEEEEEEECTTSCE----EEEECCSSSSEEEECCCCTTCSC----EEEEEECSSSCCEEE
T ss_pred             CCEEEEEEECCEEEEEEEECCeeEEEEEECCCCe----eEEeecCCCceEEeeecCCCCCE----EEEEecCCCCCCEEE
Confidence            333378888886665554 44  68899987432    23332 24456777777777653    44444332   7899


Q ss_pred             EEeeccCC
Q 013717          417 AWQVSVSC  424 (437)
Q Consensus       417 iw~~~~~~  424 (437)
                      .||+.+++
T Consensus       400 ~~d~~~g~  407 (693)
T 3iuj_A          400 RFEPKSGA  407 (693)
T ss_dssp             EECTTTCC
T ss_pred             EEECCCCe
Confidence            99987664

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.07  E-value=2.3e-08  Score=89.05  Aligned_cols=266  Identities=11%  Similarity=0.089  Sum_probs=153.8

Q ss_pred             CCeEEEEee--CCEEEEEec--C-eEEEEeCCCCceeeeecc-ccCCCCcccEEEEEEeCCe-EEEEec------CCeEE
Q 013717           99 LPIGCIAVH--HNFLYAASS--H-EINVYDRTGTTWTSINTF-NDNDSSSGSVKSVTFCDGK-IFTAHQ------DCKIR  165 (437)
Q Consensus        99 ~~V~~l~~~--~~~l~s~~~--d-~v~vwd~~~~~~~~~~~~-~~~~~h~~~v~~l~~~~~~-l~s~~~------dg~i~  165 (437)
                      .....++++  |+++++...  + .++||.+.++........ .....|...+..++++++. |+.+..      ++.|.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~   96 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV   96 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence            678899998  777777542  2 355665544432211111 1113466789999999754 655543      57899


Q ss_pred             EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE----CCCcEEEEEC
Q 013717          166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS----WDKSLKIWRA  239 (437)
Q Consensus       166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~----~dg~i~iwd~  239 (437)
                      +||+.+++....+..-...                        ..+...+..+++++  ..++.+.    .++.|.+||+
T Consensus        97 ~~d~~tg~~~~~~~~~~~~------------------------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~  152 (343)
T 2qe8_A           97 AWDTLNNQLSRVIYLPPPI------------------------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDL  152 (343)
T ss_dssp             EEETTTTEEEEEEECCTTT------------------------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEET
T ss_pred             EEECCCCeEEEEEECChhh------------------------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEEC
Confidence            9999887643332210000                        01334567888875  4554443    5789999999


Q ss_pred             CCcceEEEeecccccEE-EEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC
Q 013717          240 SDLRCLESIKAHEDAVN-AVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC  317 (437)
Q Consensus       240 ~~~~~~~~~~~~~~~v~-~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  317 (437)
                      .+++....+..|..... ...+.++|. +.+...+|.++.|.                  ..+..|+|+|||+.|+.+..
T Consensus       153 ~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~------------------~~~~gia~s~dg~~ly~~~~  214 (343)
T 2qe8_A          153 QTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH------------------LGVNGIVLDAENEWLYLSPM  214 (343)
T ss_dssp             TTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC------------------CCEEEEEECTTSCEEEEEES
T ss_pred             CCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee------------------cccceeEeccCCCEEEEEeC
Confidence            98887666644321110 134555776 66677777776662                  13567999999998888877


Q ss_pred             CC-cEEEEECC---CCccc-eEEee--eecccccce--EEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCC
Q 013717          318 DR-SILVWDRE---DSANH-MVVTG--ALRGHGKAI--LCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKP  388 (437)
Q Consensus       318 dg-~i~i~d~~---~~~~~-~~~~~--~~~~~~~~i--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~  388 (437)
                      ++ .++.++..   .+... .....  ...++....  .++..++.++++...++.|.+||..+++ ...+... .+...
T Consensus       215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~-~~~~~~~-~~~~~  292 (343)
T 2qe8_A          215 HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA-YKLLVTD-EKLSW  292 (343)
T ss_dssp             SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE-EEEEEEC-GGGSC
T ss_pred             CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC-EEEEEEC-Cceec
Confidence            66 55555432   11000 00000  001122222  4444556688888888999999984443 2222221 13456


Q ss_pred             eeEEEEEccCCCCceEEEEEecCCC
Q 013717          389 VKSLTAVTEEGQNGVVSVFSGSLDG  413 (437)
Q Consensus       389 v~~l~~~~~~~~~~~~~l~s~~~dg  413 (437)
                      ..++++.+++.     ++++.+..+
T Consensus       293 p~~va~~~~g~-----l~v~~~~~~  312 (343)
T 2qe8_A          293 TDSFNFGSDGY-----LYFDCNQLH  312 (343)
T ss_dssp             EEEEEECTTSC-----EEEEECCGG
T ss_pred             CCeeEECCCCc-----EEEEeCccc
Confidence            88999998753     566655433

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.07  E-value=5.9e-11  Score=106.89  Aligned_cols=179  Identities=16%  Similarity=0.097  Sum_probs=100.5

Q ss_pred             EeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe-CC-CeEEE
Q 013717          150 FCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV-NN-GLIYS  227 (437)
Q Consensus       150 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~-~~l~~  227 (437)
                      ..++.+++++.||.|+.||..+++.......                                ..+.+..+ .. ..+++
T Consensus         7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--------------------------------~~~~s~p~~~~g~~~v~   54 (369)
T 2hz6_A            7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE--------------------------------DPVLQVPTHVEEPAFLP   54 (369)
T ss_dssp             -CTTEEEEEETTSEEEEEETTTCCEEEEEEC--------------------------------CCSCCCC-----CCEEE
T ss_pred             eeCCEEEEEcCCCEEEEEECCCCCEEEEecC--------------------------------CCceecceEcCCCEEEE
Confidence            3456699999999999999999876544331                                11111111 12 46666


Q ss_pred             EECCCcEEEEECCCcceEEEeecccc-cEE-EEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEE
Q 013717          228 VSWDKSLKIWRASDLRCLESIKAHED-AVN-AVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALAL  305 (437)
Q Consensus       228 ~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~-~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~  305 (437)
                      ++.||.|+.||.++++.+..+..+.. .+. +..+..++.+++++.++.|+.||..++...+    .+..+.    ...+
T Consensus        55 ~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w----~~~~~~----~~~~  126 (369)
T 2hz6_A           55 DPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQ----TLSSAF----ADSL  126 (369)
T ss_dssp             CTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC------------------------
T ss_pred             eCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEE----EecCCC----cccc
Confidence            78999999999999988766643211 111 1111234558888899999999987665332    232222    2345


Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC-----CEEEEEeCCCcEEEeeCCCCC
Q 013717          306 SDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA-----GLLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       306 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~  374 (437)
                      +|++..+++++.|+.|+.||.++++..+.....  ..    ......+     +.+++++.||.|+.||..+++
T Consensus       127 ~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~--~~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          127 SPSTSLLYLGRTEYTITMYDTKTRELRWNATYF--DY----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             ------EEEEEEEEEEECCCSSSSSCCCEEEEE--EE----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred             cccCCEEEEEecCCEEEEEECCCCCEEEeEecc--cc----cCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence            678889999999999999999998866654321  11    1122222     567788999999999999877

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.06  E-value=1.6e-08  Score=99.00  Aligned_cols=201  Identities=13%  Similarity=0.116  Sum_probs=127.4

Q ss_pred             CCCcEEEEEeCC--CeEEEEE-----CCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCC---------
Q 013717          211 HGDAVTGLAVNN--GLIYSVS-----WDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADR---------  273 (437)
Q Consensus       211 ~~~~v~~~~~~~--~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg---------  273 (437)
                      +...+..++|+|  ++|+.+.     ....|++||+.+++.+.... .......++|+ |++ |+.++.+.         
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence            555788889998  5666432     23579999999998655321 11113567899 998 88887774         


Q ss_pred             ----eEEEecCCCCcccceeeEEeeC-ccccEEEEEEccCCCEEEEEeC----CCcEEEEECCCCccceEEeeeeccccc
Q 013717          274 ----KIRVWAKPFNEKRHALIATLEK-HKSAVNALALSDDGTVLFSGAC----DRSILVWDREDSANHMVVTGALRGHGK  344 (437)
Q Consensus       274 ----~v~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~  344 (437)
                          .|.+|++.+.......+..... +......+.|+|||++|+....    ++.|+++|+.++.......   ..+..
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l---~~~~~  281 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV---QGDLD  281 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE---ECSSS
T ss_pred             CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE---eCCCC
Confidence                3999998765544444444443 4456788999999998865433    3589999998764222222   12222


Q ss_pred             ceE-EEEeeCCEEE-EEeCC---CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCC--cEEE
Q 013717          345 AIL-CLINVAGLLM-SGSAD---RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDG--EIRA  417 (437)
Q Consensus       345 ~i~-~~~~~~~~l~-~~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg--~i~i  417 (437)
                      ... .+...++.|+ ....+   +.|..+|+.++.. .....+..|...+.  .|+++++.    ++++...||  .|++
T Consensus       282 ~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~--~~s~~g~~----lv~~~~~~g~~~l~~  354 (693)
T 3iuj_A          282 ADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-AHWRDLIPERQQVL--TVHSGSGY----LFAEYMVDATARVEQ  354 (693)
T ss_dssp             SCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEECCCSSCE--EEEEETTE----EEEEEEETTEEEEEE
T ss_pred             ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc-cccEEEecCCCCEE--EEEEECCE----EEEEEEECCeeEEEE
Confidence            222 2556677444 44333   5789999987652 12345556666665  78888763    555555665  6888


Q ss_pred             EeeccC
Q 013717          418 WQVSVS  423 (437)
Q Consensus       418 w~~~~~  423 (437)
                      |+++.+
T Consensus       355 ~d~~g~  360 (693)
T 3iuj_A          355 FDYEGK  360 (693)
T ss_dssp             ECTTSC
T ss_pred             EECCCC
Confidence            887644

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.06  E-value=1.2e-07  Score=83.03  Aligned_cols=222  Identities=10%  Similarity=0.035  Sum_probs=131.0

Q ss_pred             CccCCeEEEEee--CC-EEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEec-CCeEEEEeC
Q 013717           96 GHKLPIGCIAVH--HN-FLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQ-DCKIRVWQL  169 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~-~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~-dg~i~iwd~  169 (437)
                      .........+|+  ++ +++++..+ .|..|+... ......      .+...+..+++++++ ++.+.. ++.|.+|+.
T Consensus        42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~~~~~~------~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~  114 (305)
T 3dr2_A           42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-TVDVLL------DATAFTNGNAVDAQQRLVHCEHGRRAITRSDA  114 (305)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-CEEEEE------ESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-CEEEEe------CCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence            455567788888  66 66676667 999999843 332222      245678999999665 666654 478999997


Q ss_pred             CCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEE----EEC-------------
Q 013717          170 TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYS----VSW-------------  230 (437)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~----~~~-------------  230 (437)
                      + ++.........                          ......++++++++  +++++    |..             
T Consensus       115 ~-g~~~~~~~~~~--------------------------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~  167 (305)
T 3dr2_A          115 D-GQAHLLVGRYA--------------------------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELA  167 (305)
T ss_dssp             T-SCEEEEECEET--------------------------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSS
T ss_pred             C-CCEEEEEeccC--------------------------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccC
Confidence            6 43221111000                          00123456677877  44443    221             


Q ss_pred             CCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCC------CeEEEecCCCCcccceeeEEe-eCccccEEE
Q 013717          231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSAD------RKIRVWAKPFNEKRHALIATL-EKHKSAVNA  302 (437)
Q Consensus       231 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d------g~v~iwd~~~~~~~~~~~~~~-~~~~~~i~~  302 (437)
                      .+.|..+|..+++.....  .......++|+|+++ |+++...      +.|.+|++....  ......+ ......+..
T Consensus       168 ~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~~~~~~pdg  243 (305)
T 3dr2_A          168 HHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFASVPDGLPDG  243 (305)
T ss_dssp             CEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE--EEEEEEEECCSSSCCCS
T ss_pred             CCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEECCCCCCCe
Confidence            256788887666654433  344578899999998 7666654      789999876432  1111111 112344567


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEe--eCCEEEEEeCCC
Q 013717          303 LALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLIN--VAGLLMSGSADR  363 (437)
Q Consensus       303 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~dg  363 (437)
                      ++++++|++ .++..+| |.+|+.. ++...    .+.... .+..+.+  +++.|+.++.++
T Consensus       244 i~~d~~G~l-wv~~~~g-v~~~~~~-g~~~~----~~~~~~-~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          244 FCVDRGGWL-WSSSGTG-VCVFDSD-GQLLG----HIPTPG-TASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             EEECTTSCE-EECCSSE-EEEECTT-SCEEE----EEECSS-CCCEEEECTTSCEEEEEETTE
T ss_pred             EEECCCCCE-EEecCCc-EEEECCC-CCEEE----EEECCC-ceeEEEEeCCCCEEEEEcCCe
Confidence            899999984 4444555 9999984 33222    222222 3555555  344677776654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.03  E-value=4.5e-11  Score=107.65  Aligned_cols=186  Identities=15%  Similarity=0.078  Sum_probs=100.0

Q ss_pred             eCCCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCcc-
Q 013717          220 VNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHK-  297 (437)
Q Consensus       220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-  297 (437)
                      +..+.+++++.||.|+.||..+++.+..+..  +.+.+..+..++. +++++.||.|+.||..++...+    .+..+. 
T Consensus         7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w----~~~~~~~   80 (369)
T 2hz6_A            7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLT----KLPFTIP   80 (369)
T ss_dssp             -CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSE----ECSCCHH
T ss_pred             eeCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceee----eeeccCc
Confidence            3458899999999999999999999988875  4555555566776 7777899999999986554322    222111 


Q ss_pred             ccEE-EEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCe
Q 013717          298 SAVN-ALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRF  376 (437)
Q Consensus       298 ~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  376 (437)
                      ..+. +..+. ++..+++++.|+.|+.||.++++....+..    +.  ...+.+.++.+++++.|+.|+.||.++++. 
T Consensus        81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~----~~--~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~-  152 (369)
T 2hz6_A           81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS----AF--ADSLSPSTSLLYLGRTEYTITMYDTKTREL-  152 (369)
T ss_dssp             HHHTTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSC-
T ss_pred             cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC----CC--cccccccCCEEEEEecCCEEEEEECCCCCE-
Confidence            1110 00111 345778888899999999999876554322    21  112233667888999999999999998772 


Q ss_pred             eeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          377 GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       377 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                        +..+..+.  ....++.++...  ...++.++.||.|+.||..+++.
T Consensus       153 --~W~~~~~~--~~~~~~~~~~~~--~~~v~~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          153 --RWNATYFD--YAASLPEDDVDY--KMSHFVSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             --CCEEEEEE--ECCBCCCCCTTC--CCCEEEEETSCEEEEECTTTCCE
T ss_pred             --EEeEeccc--ccCccccCCccc--cceEEEECCCCEEEEEECCCCcE
Confidence              22222110  111222222100  01467788899999999987764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.99  E-value=4e-06  Score=83.57  Aligned_cols=280  Identities=11%  Similarity=0.145  Sum_probs=176.0

Q ss_pred             eEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC-CeEEEEecCCeEEEEeCCCCccccc
Q 013717          101 IGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD-GKIFTAHQDCKIRVWQLTPTKHHKL  177 (437)
Q Consensus       101 V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~  177 (437)
                      |.++... ...|..|..+ .|..||..+++......    ......|.++...+ +.+..++.++-|..||..+++....
T Consensus       175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~----~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~  250 (795)
T 4a2l_A          175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIP----ILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNY  250 (795)
T ss_dssp             CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC--------CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEE
T ss_pred             eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecC----CCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEe
Confidence            8888887 5666667776 89999988764443321    12356788888874 4577777665688999876543221


Q ss_pred             ccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEee-------
Q 013717          178 KTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIK-------  249 (437)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-------  249 (437)
                      ..... ...                      .-....|.++..++ +.+..|+.+ -|.+||..+++......       
T Consensus       251 ~~~~~-~~~----------------------~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~  306 (795)
T 4a2l_A          251 LHSPS-NPK----------------------SISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGS  306 (795)
T ss_dssp             CCCTT-CTT----------------------SCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTS
T ss_pred             ecCCC-Ccc----------------------ccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCC
Confidence            11000 000                      01345799998887 778888876 58999987765443321       


Q ss_pred             cccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEee----CccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717          250 AHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLE----KHKSAVNALALSDDGTVLFSGACDRSILVWD  325 (437)
Q Consensus       250 ~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (437)
                      .....|.++...++|.+..|+.++-|..|+.....  ........    .....|.++...++|+ |..|+.++-|..||
T Consensus       307 l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~  383 (795)
T 4a2l_A          307 LSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNR--FKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYN  383 (795)
T ss_dssp             CSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGS--SEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEEC
T ss_pred             CCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCccc--ceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEc
Confidence            12357999999999999999998889999754321  11111100    1245699999998886 55577777799999


Q ss_pred             CCCCccceEEeeee-----cccccceEEEEeeCC-E-EEEEeCCCcEEEeeCCCCCCeeeeeeec-----CCCCCeeEEE
Q 013717          326 REDSANHMVVTGAL-----RGHGKAILCLINVAG-L-LMSGSADRTVRIWQRGSDGRFGCLAVLE-----GHTKPVKSLT  393 (437)
Q Consensus       326 ~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~-~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~h~~~v~~l~  393 (437)
                      ..++.... +....     .-....|.++..+.+ . |..|+.++-|.+||..+++    +..+.     .....|.++.
T Consensus       384 ~~~~~~~~-~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~----~~~~~~~~~~l~~~~v~~i~  458 (795)
T 4a2l_A          384 PITQRFTS-YTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ----VENFNQRNSQLVNENVYAIL  458 (795)
T ss_dssp             TTTCCEEE-ECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC----EEEECTTTSCCSCSCEEEEE
T ss_pred             CCCCcEEE-EecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc----EEEeecCCCCcCCCeeEEEE
Confidence            87653211 11100     012356788877643 4 8889887889999988755    22221     2345788888


Q ss_pred             EEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          394 AVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       394 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      ..+++.      |..|+.+ -|.+|+..++
T Consensus       459 ~d~~g~------lwigt~~-Gl~~~~~~~~  481 (795)
T 4a2l_A          459 PDGEGN------LWLGTLS-ALVRFNPEQR  481 (795)
T ss_dssp             ECSSSC------EEEEESS-CEEEEETTTT
T ss_pred             ECCCCC------EEEEecC-ceeEEeCCCC
Confidence            776652      4444444 5788886654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.98  E-value=2e-06  Score=73.43  Aligned_cols=249  Identities=10%  Similarity=0.029  Sum_probs=145.5

Q ss_pred             CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC--eE-EEEecCCeEEEEeCCCCcccccccccCcc
Q 013717          108 HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG--KI-FTAHQDCKIRVWQLTPTKHHKLKTTLPTV  184 (437)
Q Consensus       108 ~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  184 (437)
                      |.+|+.+..+.|+.++++...................+..++++++  .| ++-..++.|..++.+........      
T Consensus         1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~------   74 (267)
T 1npe_A            1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII------   74 (267)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE------
T ss_pred             CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE------
Confidence            3456666655889999887432211000000112346789999853  34 44456789999998754321111      


Q ss_pred             ccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE-CCCcEEEEECCCcceEEEeecccccEEEEEEe
Q 013717          185 NDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS-WDKSLKIWRASDLRCLESIKAHEDAVNAVAVS  261 (437)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  261 (437)
                                              .........+++++  +.++.+. ..+.|.++++..................++++
T Consensus        75 ------------------------~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd  130 (267)
T 1npe_A           75 ------------------------RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTD  130 (267)
T ss_dssp             ------------------------CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE
T ss_pred             ------------------------ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEe
Confidence                                    01123567888876  5555554 46789999986543222222222467899999


Q ss_pred             cC-CeEEEEeC---CCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCccceEEe
Q 013717          262 AG-GTVYTGSA---DRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSANHMVVT  336 (437)
Q Consensus       262 ~~-~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~  336 (437)
                      |+ +.+..+..   .+.|..+++....  ...+  ..........+++++++..|+.+. ..+.|.++|+..... ..+.
T Consensus       131 ~~~g~lyv~~~~~~~~~I~~~~~dg~~--~~~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~  205 (267)
T 1npe_A          131 PVRGNLYWTDWNRDNPKIETSHMDGTN--RRIL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR-RKVL  205 (267)
T ss_dssp             TTTTEEEEEECCSSSCEEEEEETTSCC--CEEE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-EEEE
T ss_pred             eCCCEEEEEECCCCCcEEEEEecCCCC--cEEE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce-EEEe
Confidence            95 55555443   4688888775322  1111  112335678999999877665554 567899999875321 1111


Q ss_pred             eeecccccceEEEEeeCCEEEEEe-CCCcEEEeeCCCCCCeeeeeeecCCC-CCeeEEEEEccC
Q 013717          337 GALRGHGKAILCLINVAGLLMSGS-ADRTVRIWQRGSDGRFGCLAVLEGHT-KPVKSLTAVTEE  398 (437)
Q Consensus       337 ~~~~~~~~~i~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~  398 (437)
                         .+ ......++.+++.|+.+. ..+.|.++|..+++   .+..+.... .....|++.|++
T Consensus       206 ---~~-~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~---~~~~i~~g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          206 ---EG-LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISK---EMDTFHPHKQTRLYGITIALSQ  262 (267)
T ss_dssp             ---EC-CCSEEEEEEETTEEEEEETTTTEEEEEETTTTE---EEEEECCSSCCCCCCEEEECSC
T ss_pred             ---cC-CCCceEEEEeCCEEEEEECCCCeEEEEeCCCCC---ceEEEccccccccceeeecCcc
Confidence               11 122345666667555555 56899999998766   455554332 246778888875

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.95  E-value=6.2e-07  Score=81.18  Aligned_cols=260  Identities=15%  Similarity=0.090  Sum_probs=157.7

Q ss_pred             ceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEe----------cC-eEEEEeCCCCceeeeeccccC-CC--
Q 013717           78 ETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAAS----------SH-EINVYDRTGTTWTSINTFNDN-DS--  140 (437)
Q Consensus        78 g~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~----------~d-~v~vwd~~~~~~~~~~~~~~~-~~--  140 (437)
                      +.|.+.|..........- |. .+  .++++  +++|+.+.          .+ .|.++|..+.+  .+..+... ..  
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~--vv~~I~v~g~~r~  173 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL--PIADIELPDAPRF  173 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCC
T ss_pred             CeEEEEECCCCEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc--EEEEEECCCcccc
Confidence            789999987755444443 54 34  78888  77777775          34 89999999953  33333210 00  


Q ss_pred             -CcccEEEEEEeCCe--EEEEec--CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcE
Q 013717          141 -SSGSVKSVTFCDGK--IFTAHQ--DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV  215 (437)
Q Consensus       141 -h~~~v~~l~~~~~~--l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  215 (437)
                       .......+.+++++  ++.+..  ++.|.+.|+.+.+....+..                               .. .
T Consensus       174 ~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v-------------------------------~g-~  221 (426)
T 3c75_H          174 LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV-------------------------------PD-C  221 (426)
T ss_dssp             CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-------------------------------CS-E
T ss_pred             ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc-------------------------------CC-c
Confidence             12334578898765  665553  68899999998875544321                               01 1


Q ss_pred             EEEEe-CCCeEEEEECCCcEEEEECCCcceEEE----eecccccE-EEEEEecCCe-EEEEeCCCeEEEecCCCCcccce
Q 013717          216 TGLAV-NNGLIYSVSWDKSLKIWRASDLRCLES----IKAHEDAV-NAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHA  288 (437)
Q Consensus       216 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~v-~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~  288 (437)
                      ..+.. ....+++.+.||.+.+.+..+++....    +.....++ ..+.+.+++. ++.....+.|.+.|+......  
T Consensus       222 ~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~--  299 (426)
T 3c75_H          222 YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGAT--  299 (426)
T ss_dssp             EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEE--
T ss_pred             eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceE--
Confidence            11111 125667778899988888866655532    11111111 2346788877 777778899999988543211  


Q ss_pred             eeEEeeC----------ccccEEEEEEccCCCEEEEEeC----------CCcEEEEECCCCccceEEeeeecccccceEE
Q 013717          289 LIATLEK----------HKSAVNALALSDDGTVLFSGAC----------DRSILVWDREDSANHMVVTGALRGHGKAILC  348 (437)
Q Consensus       289 ~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~  348 (437)
                      .+..+..          .......++++|+++++++...          ++.|.++|..+.+....+.   .+....-..
T Consensus       300 v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~---vg~~P~gia  376 (426)
T 3c75_H          300 FRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE---LGHEIDSIN  376 (426)
T ss_dssp             ECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE---EEEEECEEE
T ss_pred             EeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE---CCCCcCeEE
Confidence            1111110          0111223689999988777643          4579999998876443332   122222344


Q ss_pred             EEeeCC-EEEEEe-CCCcEEEeeCCCCCCeeeeeee
Q 013717          349 LINVAG-LLMSGS-ADRTVRIWQRGSDGRFGCLAVL  382 (437)
Q Consensus       349 ~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~  382 (437)
                      +..+++ ++++.. .++.|.++|..+.+   .+.++
T Consensus       377 ~spDg~~~lyv~n~~s~~VsVID~~t~k---vv~tI  409 (426)
T 3c75_H          377 VSQDAEPLLYALSAGTQTLHIYDAATGE---ELRSV  409 (426)
T ss_dssp             ECCSSSCEEEEEETTTTEEEEEETTTCC---EEEEE
T ss_pred             EccCCCEEEEEEcCCCCeEEEEECCCCC---EEEEe
Confidence            555566 777777 58999999999977   56564

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.93  E-value=4.9e-06  Score=82.78  Aligned_cols=295  Identities=11%  Similarity=0.102  Sum_probs=171.5

Q ss_pred             CCeEEEEee-CCEEEEEecCeEEEEeCCCCceeeeecccc--CCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcc
Q 013717           99 LPIGCIAVH-HNFLYAASSHEINVYDRTGTTWTSINTFND--NDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKH  174 (437)
Q Consensus        99 ~~V~~l~~~-~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~--~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~  174 (437)
                      ..|.++... ...|..|+.+-+.+||..++..........  .......|.+|....++ |..|+..+-|.++|..+.+.
T Consensus       211 ~~i~~i~~d~~g~lwigt~~Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~  290 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIGTSKGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQF  290 (781)
T ss_dssp             SSEEEEEECTTCCEEEEETTEEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC--
T ss_pred             CceeEEEEcCCCCEEEEeCCcHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCee
Confidence            568898887 444555555588899988754443321100  01134679999987554 88888756788899876543


Q ss_pred             cccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEee----
Q 013717          175 HKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIK----  249 (437)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~----  249 (437)
                      .......      +..+...          .....-....|.++..+. +.|..|+.++-|..++..+........    
T Consensus       291 ~~~~~~~------f~~~~~~----------~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~  354 (781)
T 3v9f_A          291 LLPEQIR------FEFIREG----------DNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQ  354 (781)
T ss_dssp             -------------CEEECBC----------SSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----C
T ss_pred             eeeeccc------cccccCC----------CCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccc
Confidence            2211100      0000000          000001456789998887 788889988889999987654332211    


Q ss_pred             -----cccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeE-EeeCccccEEEEEEccCCCEEEEEeCCCcEEE
Q 013717          250 -----AHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIA-TLEKHKSAVNALALSDDGTVLFSGACDRSILV  323 (437)
Q Consensus       250 -----~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  323 (437)
                           .....|.++...++|.|..|+.++-|..||......  .... ........|.++...++|++. .|+.++-|..
T Consensus       355 ~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~  431 (781)
T 3v9f_A          355 MNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVA--IYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNISY  431 (781)
T ss_dssp             CCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEE--ECC-----CCCSBEEEEEECTTSCEE-EEETTEEEEE
T ss_pred             cccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeE--EEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEEE
Confidence                 123569999998888899999877888997643211  1110 001234678999988888654 4666667999


Q ss_pred             EECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeec---CCCCCeeEEEEEccCC
Q 013717          324 WDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLE---GHTKPVKSLTAVTEEG  399 (437)
Q Consensus       324 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~  399 (437)
                      +|..+++..  ...........|.++..+.+ .|..|+. +-|..||..+++ +.......   .....|.++...+++ 
T Consensus       432 ~~~~~~~~~--~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~d~~g-  506 (781)
T 3v9f_A          432 YNTRLKKFQ--IIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKK-VIHHYDTSNSQLLENFVRSIAQDSEG-  506 (781)
T ss_dssp             ECSSSCEEE--ECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSS-CCEEECTTTSSCSCSCEEEEEECTTC-
T ss_pred             EcCCCCcEE--EeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCe-EEecccCcccccccceeEEEEEcCCC-
Confidence            998665311  11000113456788887754 6666777 458899987654 11221111   113578888877766 


Q ss_pred             CCceEEEEEecCCCcEEEEeecc
Q 013717          400 QNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       400 ~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                           .|..|+.++-|..|+.+.
T Consensus       507 -----~lWigt~~~Gl~~~~~~~  524 (781)
T 3v9f_A          507 -----RFWIGTFGGGVGIYTPDM  524 (781)
T ss_dssp             -----CEEEEESSSCEEEECTTC
T ss_pred             -----CEEEEEcCCCEEEEeCCC
Confidence                 355555544466677554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.93  E-value=4e-06  Score=81.45  Aligned_cols=303  Identities=11%  Similarity=0.075  Sum_probs=163.8

Q ss_pred             ccccCCCceeEEecCCCcceeeeecCccC----------Ce-EEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccC
Q 013717           71 LQKLSPDETINFSSASHLCINSVQLGHKL----------PI-GCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDN  138 (437)
Q Consensus        71 ~~s~s~dg~i~~~~~~~~~~~~~~~~h~~----------~V-~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~  138 (437)
                      +...+.++.+..+|......+-..-....          .+ ..+++.+..++.++.+ .|..+|..+++..-.......
T Consensus        69 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~  148 (668)
T 1kv9_A           69 IYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDP  148 (668)
T ss_dssp             EEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCT
T ss_pred             EEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeeccCCC
Confidence            33345567777777654333322211110          11 2344567788888888 999999998743322222100


Q ss_pred             CCCcccEE-EEEEeCCeEEEEec------CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEee--c-cceee
Q 013717          139 DSSSGSVK-SVTFCDGKIFTAHQ------DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRR--H-KKKLW  208 (437)
Q Consensus       139 ~~h~~~v~-~l~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~  208 (437)
                       .....+. .-.+.++.++.+..      +|.|..+|..+++........+.......    ....+....  . ....+
T Consensus       149 -~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~----~~~~~~~~~~~~~g~~~w  223 (668)
T 1kv9_A          149 -AKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPY----EHPELREAAKTWQGDQYW  223 (668)
T ss_dssp             -TSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC----SSHHHHHHHTTCCSSCHH
T ss_pred             -CCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccc----cccccccccccCCcccee
Confidence             0001111 11223566666543      58999999999987665543221100000    000000000  0 00000


Q ss_pred             --ecCCCcEEEEEeCC--CeEEEEECCC-------------------cEEEEECCCcceEEEeec--cc-------ccEE
Q 013717          209 --IEHGDAVTGLAVNN--GLIYSVSWDK-------------------SLKIWRASDLRCLESIKA--HE-------DAVN  256 (437)
Q Consensus       209 --~~~~~~v~~~~~~~--~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~--~~-------~~v~  256 (437)
                        .+.......+++++  +.++.+..++                   .|..+|.++++.+..++.  |.       .+..
T Consensus       224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~  303 (668)
T 1kv9_A          224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT  303 (668)
T ss_dssp             HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred             eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence              01112222456665  7777777665                   499999999999888763  21       2233


Q ss_pred             EEEEecCCe----EEEEeCCCeEEEecCCCCcccceee-------EEeeC-ccccE------------------------
Q 013717          257 AVAVSAGGT----VYTGSADRKIRVWAKPFNEKRHALI-------ATLEK-HKSAV------------------------  300 (437)
Q Consensus       257 ~~~~~~~~~----l~~~~~dg~v~iwd~~~~~~~~~~~-------~~~~~-~~~~i------------------------  300 (437)
                      ...+..+|+    ++.++.+|.+.++|..+++......       ..+.. ...++                        
T Consensus       304 ~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w  383 (668)
T 1kv9_A          304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNW  383 (668)
T ss_dssp             EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCS
T ss_pred             EEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCC
Confidence            333334664    8888999999999887654221100       00000 00000                        


Q ss_pred             EEEEEccCCCEEEEE------------------------------------eCCCcEEEEECCCCccceEEeeeeccccc
Q 013717          301 NALALSDDGTVLFSG------------------------------------ACDRSILVWDREDSANHMVVTGALRGHGK  344 (437)
Q Consensus       301 ~~~~~~~~~~~l~~~------------------------------------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  344 (437)
                      ..++++|+..+++..                                    ..+|.|+.||+.+++.........   ..
T Consensus       384 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~---~~  460 (668)
T 1kv9_A          384 HSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT---HW  460 (668)
T ss_dssp             SCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS---SC
T ss_pred             CcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC---CC
Confidence            126777776665542                                    134889999999988665543211   11


Q ss_pred             ceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecC
Q 013717          345 AILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEG  384 (437)
Q Consensus       345 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  384 (437)
                      .-..+...+.++++++.||.++.||.++++   .+..+..
T Consensus       461 ~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~---~l~~~~~  497 (668)
T 1kv9_A          461 NGGTLSTAGNLVFQGTAAGQMHAYSADKGE---ALWQFEA  497 (668)
T ss_dssp             CCCEEEETTTEEEEECTTSEEEEEETTTCC---EEEEEEC
T ss_pred             cCceeEeCCCEEEEECCcccchhhhhhcCh---hheEecC
Confidence            113455567899999999999999999988   4555443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.91  E-value=1.9e-06  Score=85.78  Aligned_cols=288  Identities=11%  Similarity=0.089  Sum_probs=174.1

Q ss_pred             cCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeec-------c--ccCCCCcccEEEEEEeCCe-EEEEecCCeEE
Q 013717           98 KLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINT-------F--NDNDSSSGSVKSVTFCDGK-IFTAHQDCKIR  165 (437)
Q Consensus        98 ~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~-------~--~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~  165 (437)
                      ...|.++... ...|..|+.. -|.++|..++.......       .  ....-....|.+|....++ |..|+.++-|.
T Consensus       257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~  336 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGIN  336 (781)
T ss_dssp             CCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEE
T ss_pred             CceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEE
Confidence            3568999887 6677778875 88999988754332221       0  0011245679999988655 88898888899


Q ss_pred             EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcce
Q 013717          166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRC  244 (437)
Q Consensus       166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~  244 (437)
                      .++............ +...        .          .  ..-....|.++..++ ..|..|+.++-|..||..+++.
T Consensus       337 ~~~~~~~~~~~~~~~-~~~~--------~----------~--~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~  395 (781)
T 3v9f_A          337 FISNAPPTFHTWSYS-PTQM--------N----------E--SSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVA  395 (781)
T ss_dssp             EECSSCCSCEEEC-----CC--------C----------S--SCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEE
T ss_pred             EeCCCCCcceeeccC-cccc--------c----------c--CCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeE
Confidence            998875532211100 0000        0          0  001345689999887 7888888777899999876533


Q ss_pred             EEEe---ecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEee---CccccEEEEEEccCCCEEEEEeCC
Q 013717          245 LESI---KAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLE---KHKSAVNALALSDDGTVLFSGACD  318 (437)
Q Consensus       245 ~~~~---~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d  318 (437)
                      ....   ......|.++...+++.|.+|+.++-|..+|..+..     ...+.   .....|.++...++|+ |..|+. 
T Consensus       396 ~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-----~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-  468 (781)
T 3v9f_A          396 IYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKK-----FQIIELEKNELLDVRVFYEDKNKK-IWIGTH-  468 (781)
T ss_dssp             ECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCE-----EEECCSTTTCCCCEEEEEECTTSE-EEEEET-
T ss_pred             EEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCc-----EEEeccCCCCCCeEEEEEECCCCC-EEEEEC-
Confidence            2211   123467999998888888889988889999765332     22222   1346789999888886 444555 


Q ss_pred             CcEEEEECCCCccceEEeee-ecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecC----CCCCeeEE
Q 013717          319 RSILVWDREDSANHMVVTGA-LRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEG----HTKPVKSL  392 (437)
Q Consensus       319 g~i~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----h~~~v~~l  392 (437)
                      +-|..||..+++........ .......|.++..+.+ .|..|+.++-|..||..+++    +..+..    ....|.++
T Consensus       469 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~----~~~~~~~~~l~~~~i~~i  544 (781)
T 3v9f_A          469 AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQL----VRKFNQYEGFCSNTINQI  544 (781)
T ss_dssp             TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCE----EEEECTTTTCSCSCEEEE
T ss_pred             CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCe----EEEccCCCCCCCCeeEEE
Confidence            45899998765432211100 0011356778877654 66667765558888876543    222221    23468888


Q ss_pred             EEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          393 TAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       393 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      ...+++.      |..++.+|.|..||..++
T Consensus       545 ~~d~~g~------lWi~T~~Glv~~~d~~~~  569 (781)
T 3v9f_A          545 YRSSKGQ------MWLATGEGLVCFPSARNF  569 (781)
T ss_dssp             EECTTSC------EEEEETTEEEEESCTTTC
T ss_pred             EECCCCC------EEEEECCCceEEECCCCC
Confidence            7777663      444555665577776544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.91  E-value=1.6e-06  Score=72.89  Aligned_cols=197  Identities=9%  Similarity=0.017  Sum_probs=131.7

Q ss_pred             cEEEEEeCC-CeEEEEEC---CCcEEEEECCCcceEEEeecc-cccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc
Q 013717          214 AVTGLAVNN-GLIYSVSW---DKSLKIWRASDLRCLESIKAH-EDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH  287 (437)
Q Consensus       214 ~v~~~~~~~-~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~  287 (437)
                      ....+.+++ +.|+.++.   ++.|+++|+.+++.+..+... ......+++.. ++ .++.-.++.+.++|..+.    
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~----   96 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTL----   96 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTT----
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCC----
Confidence            467899998 77776653   589999999999999887622 22334566653 35 555567899999987644    


Q ss_pred             eeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccc-cceEEEEeeCCEEEEEe-CCCcE
Q 013717          288 ALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHG-KAILCLINVAGLLMSGS-ADRTV  365 (437)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~l~~~~-~dg~i  365 (437)
                      +.+.++......  ...+++||+.++++..++.|.++|..+.+....+.-...+.. .....+.+.+..+++.. .++.|
T Consensus        97 ~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V  174 (266)
T 2iwa_A           97 SNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCI  174 (266)
T ss_dssp             EEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEE
T ss_pred             cEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeE
Confidence            345555422111  234566888888877889999999988664433322111111 12445555555454444 57899


Q ss_pred             EEeeCCCCCCeeeeeeecCC-------------CCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          366 RIWQRGSDGRFGCLAVLEGH-------------TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       366 ~iwd~~~~~~~~~~~~~~~h-------------~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      .+.|..+++   .+..+.-.             ....+.|++.|+++    ++++++...+.|.+-++....
T Consensus       175 ~vID~~tg~---V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~----~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          175 ARISAKDGT---LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK----RIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             EEEETTTCC---EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT----EEEEEETTCSEEEEEEEEECC
T ss_pred             EEEECCCCc---EEEEEECCCcccccccccccccCceEEEEEcCCCC----EEEEECCCCCeEEEEEEeccc
Confidence            999999987   44443321             13568999999886    489999999999999998754

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.90  E-value=1.8e-07  Score=83.21  Aligned_cols=224  Identities=9%  Similarity=-0.007  Sum_probs=134.0

Q ss_pred             EEEEecCC----eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEE
Q 013717          155 IFTAHQDC----KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSV  228 (437)
Q Consensus       155 l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~  228 (437)
                      +++...++    +|.++|..+++....+.                             .+. .+  .+.++|  ++++++
T Consensus        35 yV~~~~~~~~~d~vsvID~~t~~v~~~i~-----------------------------vG~-~P--~i~~spDg~~lyVa   82 (368)
T 1mda_H           35 HITLPAYFAGTTENWVSCAGCGVTLGHSL-----------------------------GAF-LS--LAVAGHSGSDFALA   82 (368)
T ss_dssp             EEEECTTTCSSEEEEEEETTTTEEEEEEE-----------------------------ECT-TC--EEEECTTSSCEEEE
T ss_pred             EEECCccCCccceEEEEECCCCeEEEEEe-----------------------------CCC-CC--ceEECCCCCEEEEE
Confidence            44544455    88899999887654443                             122 24  688888  677776


Q ss_pred             E----------CCCcEEEEECCCcceEEEeecc-------cccEEEEEEecCCe-EEEEeC--CCeEEE--ecCCCCccc
Q 013717          229 S----------WDKSLKIWRASDLRCLESIKAH-------EDAVNAVAVSAGGT-VYTGSA--DRKIRV--WAKPFNEKR  286 (437)
Q Consensus       229 ~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~-l~~~~~--dg~v~i--wd~~~~~~~  286 (437)
                      .          .++.|.+||+.+++.+.++...       ......++++|||+ ++++..  +..|.+  +|..+ .  
T Consensus        83 n~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v--  159 (368)
T 1mda_H           83 STSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-D--  159 (368)
T ss_dssp             EEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-E--
T ss_pred             cccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-c--
Confidence            5          3788999999999999998643       12356789999998 776654  467888  98754 1  


Q ss_pred             ceeeEE------eeC---------ccccEEEEEE--------------------------ccCCCEEEEEeCCCcEEEEE
Q 013717          287 HALIAT------LEK---------HKSAVNALAL--------------------------SDDGTVLFSGACDRSILVWD  325 (437)
Q Consensus       287 ~~~~~~------~~~---------~~~~i~~~~~--------------------------~~~~~~l~~~~~dg~i~i~d  325 (437)
                       ..+..      ...         ..+.+..+..                          .+++..++..+. +.|.+.|
T Consensus       160 -~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD  237 (368)
T 1mda_H          160 -QLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGD  237 (368)
T ss_dssp             -EEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEE
T ss_pred             -eEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEE
Confidence             01100      000         0000000000                          233333333344 6677777


Q ss_pred             CCCCccceEEeeee------------cccccceEEEEeeCCEEEEEeC---------CCcEEEeeCCCCCCeeeeeeecC
Q 013717          326 REDSANHMVVTGAL------------RGHGKAILCLINVAGLLMSGSA---------DRTVRIWQRGSDGRFGCLAVLEG  384 (437)
Q Consensus       326 ~~~~~~~~~~~~~~------------~~~~~~i~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~  384 (437)
                      +......  +...+            .........+..+++.++++..         ++.+.++|+.+.+   .+..+..
T Consensus       238 ~~~~~~~--v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~---vv~~i~v  312 (368)
T 1mda_H          238 IPAAGAT--MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ---TSGPISN  312 (368)
T ss_dssp             CCSSCCE--EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC---EEECCEE
T ss_pred             CCCCcce--EEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe---EEEEEEC
Confidence            7543211  11111            0111122456666666655432         2356699999877   4555443


Q ss_pred             CCCCeeEEEEEccCCCCceEEEEEec-CCCcEEEEeeccCCC
Q 013717          385 HTKPVKSLTAVTEEGQNGVVSVFSGS-LDGEIRAWQVSVSCP  425 (437)
Q Consensus       385 h~~~v~~l~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~  425 (437)
                      .. ...+|+|++++..    ++++.. .++.|.++|+.+.+.
T Consensus       313 g~-~p~gi~~s~Dg~~----l~va~~~~~~~VsVID~~t~kv  349 (368)
T 1mda_H          313 GH-DSDAIIAAQDGAS----DNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             EE-EECEEEECCSSSC----EEEEEETTTTEEEEEESSSCEE
T ss_pred             CC-CcceEEECCCCCE----EEEEccCCCCeEEEEECCCCcE
Confidence            22 5889999999864    677777 699999999998764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.89  E-value=8.8e-06  Score=77.37  Aligned_cols=268  Identities=10%  Similarity=0.019  Sum_probs=144.4

Q ss_pred             EEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEE-EEEEeCCeEEEEec------CCeEEEEeCCCCccc
Q 013717          104 IAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVK-SVTFCDGKIFTAHQ------DCKIRVWQLTPTKHH  175 (437)
Q Consensus       104 l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~l~s~~~------dg~i~iwd~~~~~~~  175 (437)
                      +++.+..++.++.+ .|..+|..+++..-........ ....+. .-...++.++.++.      ++.|..+|..+++..
T Consensus       111 ~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~-~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~  189 (571)
T 2ad6_A          111 LAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPK-VGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGG-GTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred             cEEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCC-ccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEE
Confidence            45567888888888 9999999987543322221100 000111 11223566666665      799999999999876


Q ss_pred             ccccccCccccceeeec--CCCCeeEEeeccceee-----ecCCCcE-EEEEeCC--CeEEEEECC--------------
Q 013717          176 KLKTTLPTVNDRLLRFM--LPNSYVTVRRHKKKLW-----IEHGDAV-TGLAVNN--GLIYSVSWD--------------  231 (437)
Q Consensus       176 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~v-~~~~~~~--~~l~~~~~d--------------  231 (437)
                      .................  ....+.-........|     ..-...+ ..+++++  +.++.+..+              
T Consensus       190 W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~  269 (571)
T 2ad6_A          190 WRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNK  269 (571)
T ss_dssp             EEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred             EEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCce
Confidence            55443221100000000  0000000000000000     0000001 1233443  455555432              


Q ss_pred             --CcEEEEECCCcceEEEeeccc----------ccEEEEEEecCC---e-EEEEeCCCeEEEecCCCCcccceeeEEeeC
Q 013717          232 --KSLKIWRASDLRCLESIKAHE----------DAVNAVAVSAGG---T-VYTGSADRKIRVWAKPFNEKRHALIATLEK  295 (437)
Q Consensus       232 --g~i~iwd~~~~~~~~~~~~~~----------~~v~~~~~~~~~---~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  295 (437)
                        +.|..+|.++++.+..++...          .++ -+....+|   + ++.++.+|.+.++|..+++..+    ....
T Consensus       270 y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w----~~~~  344 (571)
T 2ad6_A          270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV----AEKV  344 (571)
T ss_dssp             TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE----EEES
T ss_pred             eEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEe----eecc
Confidence              359999999999988876321          122 12223467   3 6778889999999987654322    2111


Q ss_pred             cc-------------ccE--------------------------EEEEEccCCCEEEEEe--------------------
Q 013717          296 HK-------------SAV--------------------------NALALSDDGTVLFSGA--------------------  316 (437)
Q Consensus       296 ~~-------------~~i--------------------------~~~~~~~~~~~l~~~~--------------------  316 (437)
                      ..             .++                          ..++++|+..++++..                    
T Consensus       345 ~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~  424 (571)
T 2ad6_A          345 DPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFF  424 (571)
T ss_dssp             STTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred             cCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcc
Confidence            00             111                          2467888777776653                    


Q ss_pred             -----------------CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeee
Q 013717          317 -----------------CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCL  379 (437)
Q Consensus       317 -----------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  379 (437)
                                       .+|.|..||+.+++.............   ..+...+..++.++.||.|+.||.++++   .+
T Consensus       425 ~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~---~~~~t~gg~v~~g~~dg~l~a~D~~tG~---~l  498 (571)
T 2ad6_A          425 VGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWG---GTLYTKGGLVWYATLDGYLKALDNKDGK---EL  498 (571)
T ss_dssp             CCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCS---BCEEETTTEEEEECTTSEEEEEETTTCC---EE
T ss_pred             ccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccc---eeEEECCCEEEEEcCCCeEEEEECCCCC---EE
Confidence                             357899999998876655432211111   1233446788889999999999999988   45


Q ss_pred             eeec
Q 013717          380 AVLE  383 (437)
Q Consensus       380 ~~~~  383 (437)
                      ..+.
T Consensus       499 w~~~  502 (571)
T 2ad6_A          499 WNFK  502 (571)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            4444

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.89  E-value=3e-07  Score=89.32  Aligned_cols=199  Identities=13%  Similarity=0.103  Sum_probs=117.1

Q ss_pred             eCCEEEEEecC-eEEEEeCCCCceeeeeccccCCC----Cc-cc-EEEEEEeCCeEEEEecCCeEEEEeCCCCccccccc
Q 013717          107 HHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDS----SS-GS-VKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKT  179 (437)
Q Consensus       107 ~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~----h~-~~-v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  179 (437)
                      .+..|+.++.+ .|..+|..+++..=.........    .. .. -..+++.++.++.++.|+.|..+|..+++......
T Consensus        65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~  144 (668)
T 1kv9_A           65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (668)
T ss_dssp             ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence            46777777777 89999998864322221110000    00 00 12344567778899999999999999998665443


Q ss_pred             ccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEEC------CCcEEEEECCCcceEEEeeccc-
Q 013717          180 TLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSW------DKSLKIWRASDLRCLESIKAHE-  252 (437)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~-  252 (437)
                      .......                     +.....++    +..+.++++..      +|.|..+|.++++.+..+.... 
T Consensus       145 ~~~~~~~---------------------~~~~~~P~----v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~  199 (668)
T 1kv9_A          145 TTDPAKP---------------------YSITGAPR----VVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPG  199 (668)
T ss_dssp             CSCTTSS---------------------CBCCSCCE----EETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC
T ss_pred             cCCCCCc---------------------ceecCCCE----EECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCC
Confidence            2110000                     00011111    12345555543      5899999999999988875210 


Q ss_pred             --c----------------------------cEEEEEEecCCe-EEEEeCCC-------------------eEEEecCCC
Q 013717          253 --D----------------------------AVNAVAVSAGGT-VYTGSADR-------------------KIRVWAKPF  282 (437)
Q Consensus       253 --~----------------------------~v~~~~~~~~~~-l~~~~~dg-------------------~v~iwd~~~  282 (437)
                        .                            ....+++.|+.. ++.++.++                   .|..+|.++
T Consensus       200 ~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~t  279 (668)
T 1kv9_A          200 DPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDT  279 (668)
T ss_dssp             CTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT
T ss_pred             CCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCC
Confidence              0                            012367777655 77777666                   388898876


Q ss_pred             CcccceeeEEeeCcc-------ccEEEEEEccCCC---EEEEEeCCCcEEEEECCCCccc
Q 013717          283 NEKRHALIATLEKHK-------SAVNALALSDDGT---VLFSGACDRSILVWDREDSANH  332 (437)
Q Consensus       283 ~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~  332 (437)
                      +...+...  ...|.       .++....+..+|+   .++.++.+|.++++|.++++..
T Consensus       280 G~~~W~~~--~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          280 GKLAWHYQ--VTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             CCEEEEEE--SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             CceeeEee--cCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence            65333221  11121       2333333334675   6889999999999999998754

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.84  E-value=4.3e-06  Score=74.98  Aligned_cols=223  Identities=11%  Similarity=0.077  Sum_probs=132.6

Q ss_pred             CCEEEEEecC--eEEEEeCCCC--ceeeeecccc--C--CCCcccEEEEEEeCCe-EEEEecC------CeEEEEeCCCC
Q 013717          108 HNFLYAASSH--EINVYDRTGT--TWTSINTFND--N--DSSSGSVKSVTFCDGK-IFTAHQD------CKIRVWQLTPT  172 (437)
Q Consensus       108 ~~~l~s~~~d--~v~vwd~~~~--~~~~~~~~~~--~--~~h~~~v~~l~~~~~~-l~s~~~d------g~i~iwd~~~~  172 (437)
                      +++|+..+..  .|.|+|+.+.  +.+..+.+..  .  .........+...+++ ++++..+      |.|.+.|.++.
T Consensus        95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~  174 (462)
T 2ece_A           95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSF  174 (462)
T ss_dssp             SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTC
T ss_pred             CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCC
Confidence            6677766654  9999999753  2334443310  0  0011244566677776 4555444      78999999988


Q ss_pred             cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE-------------------CC
Q 013717          173 KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS-------------------WD  231 (437)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-------------------~d  231 (437)
                      +.......-.                           +....-..+.|+|  +.+++..                   .+
T Consensus       175 ~v~~~~~~~~---------------------------~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~  227 (462)
T 2ece_A          175 EPLGKWEIDR---------------------------GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYG  227 (462)
T ss_dssp             CEEEECCSBC---------------------------TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSC
T ss_pred             eEEEEEccCC---------------------------CCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccC
Confidence            7555443110                           0111123466666  5555553                   37


Q ss_pred             CcEEEEECCCcceEEEeecc--cccEEEEEE--ecCCe--EEEEe-----CCCeEEEecCCCCcccceeeEEe--eCc--
Q 013717          232 KSLKIWRASDLRCLESIKAH--EDAVNAVAV--SAGGT--VYTGS-----ADRKIRVWAKPFNEKRHALIATL--EKH--  296 (437)
Q Consensus       232 g~i~iwd~~~~~~~~~~~~~--~~~v~~~~~--~~~~~--l~~~~-----~dg~v~iwd~~~~~~~~~~~~~~--~~~--  296 (437)
                      .+|.+||+.+++.+.++...  ......+.|  +|+++  ++++-     .+++|.+|..+.  ..+...+.+  ...  
T Consensus       228 d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~--g~~~~~~vIdi~~~~v  305 (462)
T 2ece_A          228 NRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED--GKWNAEKVIEIPAEPL  305 (462)
T ss_dssp             CEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET--TEEEEEEEEEECCEEC
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC--CceeEEEEEeCCCccc
Confidence            89999999999888887642  133445555  99998  44444     677888876542  222222221  110  


Q ss_pred             --------------cccEEEEEEccCCCEEEEEeC-CCcEEEEECCCCccceEEeeee-cc-c--------------ccc
Q 013717          297 --------------KSAVNALALSDDGTVLFSGAC-DRSILVWDREDSANHMVVTGAL-RG-H--------------GKA  345 (437)
Q Consensus       297 --------------~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~-~~-~--------------~~~  345 (437)
                                    ...+..|.+++||++|.++.. .+.|.+||+....... +.... .+ .              ...
T Consensus       306 ~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~-lv~~I~tGG~~~~~~~~~G~~~~ggPr  384 (462)
T 2ece_A          306 EGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPV-LTGKVKLGGIFHRADHPAGHKLTGAPQ  384 (462)
T ss_dssp             CSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCE-EEEEEECBTTTTCBCCTTSCCCCSCCC
T ss_pred             cccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE-EEEEEEeCCeeccccccccccCCCCCC
Confidence                          245788999999999988766 6899999997443222 22222 11 1              123


Q ss_pred             eEEEEeeCCEEEEEe
Q 013717          346 ILCLINVAGLLMSGS  360 (437)
Q Consensus       346 i~~~~~~~~~l~~~~  360 (437)
                      -..++.++++|+++.
T Consensus       385 ~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          385 MLEISRDGRRVYVTN  399 (462)
T ss_dssp             CEEECTTSSEEEEEC
T ss_pred             EEEEcCCCCEEEEEc
Confidence            466667777777776

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.84  E-value=3.1e-05  Score=73.63  Aligned_cols=287  Identities=9%  Similarity=0.017  Sum_probs=147.8

Q ss_pred             EEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEE-EEEEeCCeEEEEe------cCCeEEEEeCCCCcccccccccC
Q 013717          111 LYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVK-SVTFCDGKIFTAH------QDCKIRVWQLTPTKHHKLKTTLP  182 (437)
Q Consensus       111 l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~  182 (437)
                      ++.++.+ .|..+|..+++..-........ ....+. .-.+.++.++.++      .+|.|+.+|.++++.........
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~-~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~  202 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIK-VGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG  202 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGG-GTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCC-ccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCC
Confidence            7788888 9999999987543222221100 000111 1122356666665      38999999999998765544322


Q ss_pred             ccccceeee--cCCCCe-----eEEeeccceeeecCCCcEE-EEEeCC--CeEEEEECC----------------CcEEE
Q 013717          183 TVNDRLLRF--MLPNSY-----VTVRRHKKKLWIEHGDAVT-GLAVNN--GLIYSVSWD----------------KSLKI  236 (437)
Q Consensus       183 ~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~v~-~~~~~~--~~l~~~~~d----------------g~i~i  236 (437)
                      .........  ......     ..........+..-...+. .+++++  +.++.+..+                +.|..
T Consensus       203 ~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~A  282 (599)
T 1w6s_A          203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG  282 (599)
T ss_dssp             CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred             CccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEE
Confidence            110000000  000000     0000000000000001111 223333  566666554                47999


Q ss_pred             EECCCcceEEEeecccc----------cEEEEEEe-cCC---e-EEEEeCCCeEEEecCCCCcccceeeEE--------e
Q 013717          237 WRASDLRCLESIKAHED----------AVNAVAVS-AGG---T-VYTGSADRKIRVWAKPFNEKRHALIAT--------L  293 (437)
Q Consensus       237 wd~~~~~~~~~~~~~~~----------~v~~~~~~-~~~---~-l~~~~~dg~v~iwd~~~~~~~~~~~~~--------~  293 (437)
                      +|.++++.+..++....          ++. +... .+|   . ++.++.+|.+.++|.++++..+.....        .
T Consensus       283 ld~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~  361 (599)
T 1w6s_A          283 RDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSV  361 (599)
T ss_dssp             EETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred             EeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccc
Confidence            99999999888763221          121 2222 466   4 677889999999998765532211100        0


Q ss_pred             e-CccccE--------------------------EEEEEccCCCEEEEEe------------------------------
Q 013717          294 E-KHKSAV--------------------------NALALSDDGTVLFSGA------------------------------  316 (437)
Q Consensus       294 ~-~~~~~i--------------------------~~~~~~~~~~~l~~~~------------------------------  316 (437)
                      . ....++                          ..++++|+..++++..                              
T Consensus       362 ~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~  441 (599)
T 1w6s_A          362 DLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPG  441 (599)
T ss_dssp             CTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred             ccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccC
Confidence            0 000111                          2456677666554421                              


Q ss_pred             ---------CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCC
Q 013717          317 ---------CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTK  387 (437)
Q Consensus       317 ---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~  387 (437)
                               .+|.|..||+.+++.............   -.+...+.+++.++.||.|+.||.++++   .+..++-...
T Consensus       442 p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~---g~~~tagg~vf~gt~dg~l~A~D~~tG~---~lW~~~l~~g  515 (599)
T 1w6s_A          442 PKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWG---GTMATAGDLVFYGTLDGYLKARDSDTGD---LLWKFKIPSG  515 (599)
T ss_dssp             TTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCS---BCEEETTTEEEEECTTSEEEEEETTTCC---EEEEEECSSC
T ss_pred             CcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccC---cceEecCCEEEEECCCCeEEEEECCCCC---EEEEeeCCCC
Confidence                     347899999998876655432211111   1244557788889999999999999988   4444433222


Q ss_pred             C-eeEEEEEccCCCCceEEEEEe
Q 013717          388 P-VKSLTAVTEEGQNGVVSVFSG  409 (437)
Q Consensus       388 ~-v~~l~~~~~~~~~~~~~l~s~  409 (437)
                      . ..-+.+..++.    +|+++.
T Consensus       516 ~~~~P~~y~~~G~----qyv~~~  534 (599)
T 1w6s_A          516 AIGYPMTYTHKGT----QYVAIY  534 (599)
T ss_dssp             CCSCCEEEEETTE----EEEEEE
T ss_pred             cEeccEEEEeCCE----EEEEEE
Confidence            1 12244555553    355544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.83  E-value=8e-06  Score=68.62  Aligned_cols=200  Identities=11%  Similarity=0.024  Sum_probs=131.7

Q ss_pred             eeeeecCccC--CeEEEEeeC-CEEEEEe-c--C-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeE-EEEecC
Q 013717           90 INSVQLGHKL--PIGCIAVHH-NFLYAAS-S--H-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKI-FTAHQD  161 (437)
Q Consensus        90 ~~~~~~~h~~--~V~~l~~~~-~~l~s~~-~--d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l-~s~~~d  161 (437)
                      +.+..+.|..  ....++|++ ..|+.++ .  + .|+++|+.+++......+   . .......+++.++.| ++.-.+
T Consensus        10 ~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l---~-~~~fgeGi~~~g~~lyv~t~~~   85 (266)
T 2iwa_A           10 EVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM---D-DSYFGEGLTLLNEKLYQVVWLK   85 (266)
T ss_dssp             EEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC---C-TTCCEEEEEEETTEEEEEETTC
T ss_pred             eEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec---C-CCcceEEEEEeCCEEEEEEecC
Confidence            3445555543  357899983 4555543 2  4 999999999754443333   1 122334677777774 445568


Q ss_pred             CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCC
Q 013717          162 CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASD  241 (437)
Q Consensus       162 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~  241 (437)
                      +.+.++|..+.+....+..                             + ...=..++.+.+.++++..++.|.++|..+
T Consensus        86 ~~v~viD~~t~~v~~~i~~-----------------------------g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t  135 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKNFTH-----------------------------Q-MKDGWGLATDGKILYGSDGTSILYEIDPHT  135 (266)
T ss_dssp             SEEEEEETTTTEEEEEEEC-----------------------------C-SSSCCEEEECSSSEEEECSSSEEEEECTTT
T ss_pred             CEEEEEECCCCcEEEEEEC-----------------------------C-CCCeEEEEECCCEEEEECCCCeEEEEECCC
Confidence            8999999998875544321                             1 011134666676666666789999999999


Q ss_pred             cceEEEeeccc-----ccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCc-------------cccEEE
Q 013717          242 LRCLESIKAHE-----DAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKH-------------KSAVNA  302 (437)
Q Consensus       242 ~~~~~~~~~~~-----~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-------------~~~i~~  302 (437)
                      .+.+..+.-..     ..++.+.+. +++ ++....++.|.+.|..+..    .+..+...             ....+.
T Consensus       136 ~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~----V~~~I~~~g~~~~~~~~~~~~~~v~nG  210 (266)
T 2iwa_A          136 FKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGT----LLGWILLPNLRKKLIDEGFRDIDVLNG  210 (266)
T ss_dssp             CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCC----EEEEEECHHHHHHHHHTTCTTCCCEEE
T ss_pred             CcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCc----EEEEEECCCcccccccccccccCceEE
Confidence            99888876321     246788888 778 4455568999999887654    44444321             135689


Q ss_pred             EEEccCCCE-EEEEeCCCcEEEEECCC
Q 013717          303 LALSDDGTV-LFSGACDRSILVWDRED  328 (437)
Q Consensus       303 ~~~~~~~~~-l~~~~~dg~i~i~d~~~  328 (437)
                      |+|+|+++. ++++...+.|.+.++..
T Consensus       211 Ia~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          211 IAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             EEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             EEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            999999875 45555788898888754

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.80  E-value=7.1e-06  Score=68.08  Aligned_cols=188  Identities=12%  Similarity=0.057  Sum_probs=123.1

Q ss_pred             eeeeecCccCC--eEEEEee-CCEEEEEec-C--eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEE-ecCC
Q 013717           90 INSVQLGHKLP--IGCIAVH-HNFLYAASS-H--EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTA-HQDC  162 (437)
Q Consensus        90 ~~~~~~~h~~~--V~~l~~~-~~~l~s~~~-d--~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~-~~dg  162 (437)
                      +.+..+.|...  ...|.|+ +.++.+.+. +  .|+++|+++++......+    +....-..++..++.|+.. -.++
T Consensus        32 ~vv~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l----~~~~FgeGit~~g~~ly~ltw~~~  107 (262)
T 3nol_A           32 QIVHSYPHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIEL----GKRYFGEGISDWKDKIVGLTWKNG  107 (262)
T ss_dssp             EEEEEEECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEEC----CTTCCEEEEEEETTEEEEEESSSS
T ss_pred             EEEEEecCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEec----CCccceeEEEEeCCEEEEEEeeCC
Confidence            44555656544  4888898 554555554 2  899999999755444433    1122234567777775444 4688


Q ss_pred             eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCc
Q 013717          163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDL  242 (437)
Q Consensus       163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~  242 (437)
                      .+.+||.++.+....+..                               ...=..++...+.|+....++.|.++|..+.
T Consensus       108 ~v~v~D~~t~~~~~ti~~-------------------------------~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~  156 (262)
T 3nol_A          108 LGFVWNIRNLRQVRSFNY-------------------------------DGEGWGLTHNDQYLIMSDGTPVLRFLDPESL  156 (262)
T ss_dssp             EEEEEETTTCCEEEEEEC-------------------------------SSCCCCEEECSSCEEECCSSSEEEEECTTTC
T ss_pred             EEEEEECccCcEEEEEEC-------------------------------CCCceEEecCCCEEEEECCCCeEEEEcCCCC
Confidence            999999998876555431                               1111355666666666666788999999999


Q ss_pred             ceEEEeecc--c---ccEEEEEEecCCeE-EEEeCCCeEEEecCCCCcccceeeEEeeC------------ccccEEEEE
Q 013717          243 RCLESIKAH--E---DAVNAVAVSAGGTV-YTGSADRKIRVWAKPFNEKRHALIATLEK------------HKSAVNALA  304 (437)
Q Consensus       243 ~~~~~~~~~--~---~~v~~~~~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------------~~~~i~~~~  304 (437)
                      +.+..+...  .   ..++.+.+. +|++ +..-.++.|.+.|..++.    .+..+..            ...-.+.|+
T Consensus       157 ~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~----V~~~Id~~~L~~~~~~~~~~~~vlNGIA  231 (262)
T 3nol_A          157 TPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGK----VTGIIDLNGILAEAGPLPSPIDVLNGIA  231 (262)
T ss_dssp             SEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCB----EEEEEECTTGGGGSCSCCSSCCCEEEEE
T ss_pred             eEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCc----EEEEEECCcCccccccccCcCCceEEEE
Confidence            998887632  1   345667776 7884 444468899999877654    3333332            123568999


Q ss_pred             EccCCCEEEEEeC
Q 013717          305 LSDDGTVLFSGAC  317 (437)
Q Consensus       305 ~~~~~~~l~~~~~  317 (437)
                      |+|+++.|++.+.
T Consensus       232 ~dp~~~~lfVTGK  244 (262)
T 3nol_A          232 WDKEHHRLFVTGK  244 (262)
T ss_dssp             EETTTTEEEEEET
T ss_pred             EcCCCCEEEEECC
Confidence            9998887777654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.79  E-value=3e-06  Score=70.33  Aligned_cols=186  Identities=9%  Similarity=0.118  Sum_probs=122.3

Q ss_pred             eeeeecCccC--CeEEEEeeC-CEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeE
Q 013717           90 INSVQLGHKL--PIGCIAVHH-NFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKI  164 (437)
Q Consensus        90 ~~~~~~~h~~--~V~~l~~~~-~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i  164 (437)
                      +.+..+.|..  -...|.|++ .++++.+.+ .|+++|+++++..... +   .. ...-..+++.++. ++..-.++.+
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l---~~-~~FgeGit~~g~~Ly~ltw~~~~v  118 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-R---LG-NIFAEGLASDGERLYQLTWTEGLL  118 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-E---CT-TCCEEEEEECSSCEEEEESSSCEE
T ss_pred             EEEEEEcCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-C---CC-CcceeEEEEeCCEEEEEEccCCEE
Confidence            3445555543  347899994 455555555 9999999997554433 3   21 2222446777777 4445568999


Q ss_pred             EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcce
Q 013717          165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRC  244 (437)
Q Consensus       165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  244 (437)
                      .+||.++.+....+..                               ...=..++...+.|+.+..++.|.++|.++.+.
T Consensus       119 ~V~D~~Tl~~~~ti~~-------------------------------~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v  167 (268)
T 3nok_A          119 FTWSGMPPQRERTTRY-------------------------------SGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFAL  167 (268)
T ss_dssp             EEEETTTTEEEEEEEC-------------------------------SSCCCCEEEETTEEEEECSSSEEEEECTTTCCE
T ss_pred             EEEECCcCcEEEEEeC-------------------------------CCceeEEecCCCEEEEECCCCEEEEEcCCCCeE
Confidence            9999998876655442                               112245666677777777799999999999999


Q ss_pred             EEEeeccc-----ccEEEEEEecCCeEE-EEeCCCeEEEecCCCCcccceeeEEeeC-------------ccccEEEEEE
Q 013717          245 LESIKAHE-----DAVNAVAVSAGGTVY-TGSADRKIRVWAKPFNEKRHALIATLEK-------------HKSAVNALAL  305 (437)
Q Consensus       245 ~~~~~~~~-----~~v~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~-------------~~~~i~~~~~  305 (437)
                      +..+....     ..++.+.|. +|++. ....++.|.+.|..++.    .+..+..             ...-.+.|++
T Consensus       168 ~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~----V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~  242 (268)
T 3nok_A          168 VGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGT----VVGVIDASALTRAVAGQVTNPEAVLNGIAV  242 (268)
T ss_dssp             EEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCB----EEEEEECHHHHHHHTTTCCCTTCCEEEEEE
T ss_pred             EEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCc----EEEEEECCCCcccccccccCcCCceEEEEE
Confidence            88876322     245677777 77844 44468899999887654    3333331             1235789999


Q ss_pred             ccCCCEEEEEe
Q 013717          306 SDDGTVLFSGA  316 (437)
Q Consensus       306 ~~~~~~l~~~~  316 (437)
                      +|+++.|+..+
T Consensus       243 dp~~~rlfVTG  253 (268)
T 3nok_A          243 EPGSGRIFMTG  253 (268)
T ss_dssp             CTTTCCEEEEE
T ss_pred             cCCCCEEEEeC
Confidence            99776555544

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.78  E-value=1.7e-05  Score=71.15  Aligned_cols=185  Identities=10%  Similarity=-0.004  Sum_probs=112.1

Q ss_pred             EEEeCC-CeEEEEECC------CcEEEEECCCcceEEEeecccc---cEEEEEEecCCe-EEEEe---------------
Q 013717          217 GLAVNN-GLIYSVSWD------KSLKIWRASDLRCLESIKAHED---AVNAVAVSAGGT-VYTGS---------------  270 (437)
Q Consensus       217 ~~~~~~-~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~-l~~~~---------------  270 (437)
                      .+...| ..++++..+      |.|.++|.++++.+..+.....   --..+-|+|+++ +++..               
T Consensus       142 ~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~  221 (462)
T 2ece_A          142 TVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEH  221 (462)
T ss_dssp             EEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTT
T ss_pred             ceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhh
Confidence            444555 444544444      7899999999999999873222   234577899998 44442               


Q ss_pred             ----CCCeEEEecCCCCcccceeeEEeeCc--cccEEEEEE--ccCCCEEEEEe------CCCcEEEEECCCCccceEEe
Q 013717          271 ----ADRKIRVWAKPFNEKRHALIATLEKH--KSAVNALAL--SDDGTVLFSGA------CDRSILVWDREDSANHMVVT  336 (437)
Q Consensus       271 ----~dg~v~iwd~~~~~~~~~~~~~~~~~--~~~i~~~~~--~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~  336 (437)
                          .+..|.+||+...    +.+.++...  ......+.|  +|+++++++++      .+++|.+|....+.......
T Consensus       222 ~~~~~~d~V~v~D~~~~----k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~v  297 (462)
T 2ece_A          222 LKDRYGNRIHFWDLRKR----KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKV  297 (462)
T ss_dssp             HHHHSCCEEEEEETTTT----EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEE
T ss_pred             hhhccCCEEEEEECCCC----cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEE
Confidence                3789999998753    345555532  234556656  99999888777      46788887765432111111


Q ss_pred             eeecc------------------cccceEEEEeeCCEEEEEeC-CCcEEEeeCCCCCCeeeeeeecCCC-----------
Q 013717          337 GALRG------------------HGKAILCLINVAGLLMSGSA-DRTVRIWQRGSDGRFGCLAVLEGHT-----------  386 (437)
Q Consensus       337 ~~~~~------------------~~~~i~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~h~-----------  386 (437)
                      ..+..                  ....-..++.++++|+++.. .+.|.+||+......+.+..+.-..           
T Consensus       298 Idi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~  377 (462)
T 2ece_A          298 IEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH  377 (462)
T ss_dssp             EEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC
T ss_pred             EeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc
Confidence            00000                  11122345556666666555 6899999997544344554443210           


Q ss_pred             ---CCeeEEEEEccCCCCceEEEEEec
Q 013717          387 ---KPVKSLTAVTEEGQNGVVSVFSGS  410 (437)
Q Consensus       387 ---~~v~~l~~~~~~~~~~~~~l~s~~  410 (437)
                         +.-..++++|++.     +|+.+.
T Consensus       378 ~~~ggPr~~~lSpDGk-----~LyVaN  399 (462)
T 2ece_A          378 KLTGAPQMLEISRDGR-----RVYVTN  399 (462)
T ss_dssp             CCCSCCCCEEECTTSS-----EEEEEC
T ss_pred             cCCCCCCEEEEcCCCC-----EEEEEc
Confidence               1357899999985     455554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.75  E-value=3.8e-06  Score=69.74  Aligned_cols=181  Identities=12%  Similarity=0.079  Sum_probs=114.5

Q ss_pred             EEEEEeCC-CeEEEEECCC--cEEEEECCCcceEEEeecccccE--EEEEEecCCe-EEEEeCCCeEEEecCCCCcccce
Q 013717          215 VTGLAVNN-GLIYSVSWDK--SLKIWRASDLRCLESIKAHEDAV--NAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHA  288 (437)
Q Consensus       215 v~~~~~~~-~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~  288 (437)
                      ...+.|+. .++.+.+.+|  .|+++|+++++.+..+.... ..  ..+++. .++ .+..-.++.+.+||..+..    
T Consensus        45 tqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~-g~~ly~ltw~~~~v~v~D~~t~~----  118 (262)
T 3nol_A           45 TEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW-KDKIVGLTWKNGLGFVWNIRNLR----  118 (262)
T ss_dssp             EEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE-TTEEEEEESSSSEEEEEETTTCC----
T ss_pred             cceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe-CCEEEEEEeeCCEEEEEECccCc----
Confidence            46788877 4455556655  89999999999998886432 33  234444 234 4555568999999876543    


Q ss_pred             eeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccc-cceEEEEeeCCEEEEEe-CCCcEE
Q 013717          289 LIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHG-KAILCLINVAGLLMSGS-ADRTVR  366 (437)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~l~~~~-~dg~i~  366 (437)
                      .+.++....   ....+++|++.|+.+..++.|.++|..+.+....+.-...+.. ..+..+.+.+..|.+.. .++.|.
T Consensus       119 ~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~  195 (262)
T 3nol_A          119 QVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIV  195 (262)
T ss_dssp             EEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEE
T ss_pred             EEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEE
Confidence            555555322   2233446788888777788899999988764443332221222 22344555555455554 578999


Q ss_pred             EeeCCCCCCeeeeeeecC------------CCCCeeEEEEEccCCCCceEEEEEecC
Q 013717          367 IWQRGSDGRFGCLAVLEG------------HTKPVKSLTAVTEEGQNGVVSVFSGSL  411 (437)
Q Consensus       367 iwd~~~~~~~~~~~~~~~------------h~~~v~~l~~~~~~~~~~~~~l~s~~~  411 (437)
                      +.|..+++   .+..+..            -....+.|++.|+.+    +++++|-.
T Consensus       196 vIDp~tG~---V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~----~lfVTGK~  245 (262)
T 3nol_A          196 RIDPETGK---VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH----RLFVTGKL  245 (262)
T ss_dssp             EECTTTCB---EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT----EEEEEETT
T ss_pred             EEECCCCc---EEEEEECCcCccccccccCcCCceEEEEEcCCCC----EEEEECCC
Confidence            99999887   3333321            123568999999876    36777644

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.72  E-value=3e-05  Score=63.81  Aligned_cols=188  Identities=11%  Similarity=0.059  Sum_probs=123.1

Q ss_pred             eeeeecCcc--CCeEEEEeeCC-EEEEEec--C-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCC
Q 013717           90 INSVQLGHK--LPIGCIAVHHN-FLYAASS--H-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDC  162 (437)
Q Consensus        90 ~~~~~~~h~--~~V~~l~~~~~-~l~s~~~--d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg  162 (437)
                      +.+..+.|.  .-...|.|+++ ++.+.+.  . .|+++|+++++......+.    ....-..+++.++. ++..-.++
T Consensus        10 ~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~----~~~fgeGi~~~~~~ly~ltw~~~   85 (243)
T 3mbr_X           10 RVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVP----PPYFGAGIVAWRDRLIQLTWRNH   85 (243)
T ss_dssp             EEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECC----TTCCEEEEEEETTEEEEEESSSS
T ss_pred             EEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCC----CCcceeEEEEeCCEEEEEEeeCC
Confidence            445555554  44669999944 4445444  2 8999999997555444431    11222456667777 44455789


Q ss_pred             eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCc
Q 013717          163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDL  242 (437)
Q Consensus       163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~  242 (437)
                      .+.+||.++.+....+..                               ...=..++...+.|+.+..++.|.++|..+.
T Consensus        86 ~v~v~D~~tl~~~~ti~~-------------------------------~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~  134 (243)
T 3mbr_X           86 EGFVYDLATLTPRARFRY-------------------------------PGEGWALTSDDSHLYMSDGTAVIRKLDPDTL  134 (243)
T ss_dssp             EEEEEETTTTEEEEEEEC-------------------------------SSCCCEEEECSSCEEEECSSSEEEEECTTTC
T ss_pred             EEEEEECCcCcEEEEEeC-------------------------------CCCceEEeeCCCEEEEECCCCeEEEEeCCCC
Confidence            999999998876555431                               1122466666766666677899999999999


Q ss_pred             ceEEEeeccc-----ccEEEEEEecCCeE-EEEeCCCeEEEecCCCCcccceeeEEeeC-------------ccccEEEE
Q 013717          243 RCLESIKAHE-----DAVNAVAVSAGGTV-YTGSADRKIRVWAKPFNEKRHALIATLEK-------------HKSAVNAL  303 (437)
Q Consensus       243 ~~~~~~~~~~-----~~v~~~~~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-------------~~~~i~~~  303 (437)
                      +.+..+....     ..++.+.+. +|++ +..-.+..|.+.|..++.    .+..+..             ...-.+.|
T Consensus       135 ~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~----V~~~idl~~l~~~~~~~~~~~~~vlNGI  209 (243)
T 3mbr_X          135 QQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGK----VVAWIDLQALVPDADALTDSTNDVLNGI  209 (243)
T ss_dssp             CEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCB----EEEEEECGGGSTTTTSCCCTTSSCEEEE
T ss_pred             eEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCC----EEEEEECCcCccccccccCCcCCceEEE
Confidence            9988876322     346677766 7784 444468899999887654    3333321             22357899


Q ss_pred             EEccCCCEEEEEeC
Q 013717          304 ALSDDGTVLFSGAC  317 (437)
Q Consensus       304 ~~~~~~~~l~~~~~  317 (437)
                      +++|+++.|++.+.
T Consensus       210 A~d~~~~~lfVTGK  223 (243)
T 3mbr_X          210 AFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEETTTTEEEEEET
T ss_pred             EEcCCCCEEEEECC
Confidence            99998776666653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.71  E-value=0.00012  Score=64.45  Aligned_cols=280  Identities=10%  Similarity=0.057  Sum_probs=149.7

Q ss_pred             CccCCeEEEEee--CCEEEEEecCeEEEEeCCCC-ceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCC
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSHEINVYDRTGT-TWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPT  172 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~  172 (437)
                      .....+.+|.|.  +..+++|..+.| +...+.+ .++.+..-  .......+.+|.+.++.++.++.++.|.. ..+.+
T Consensus        33 ~~~~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~--~~~~~~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG  108 (327)
T 2xbg_A           33 PTTATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLV--LDHSDYRFNSVSFQGNEGWIVGEPPIMLH-TTDGG  108 (327)
T ss_dssp             SCSSCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCC--CSCCCCEEEEEEEETTEEEEEEETTEEEE-ESSTT
T ss_pred             CCCCcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCC--CCCCCccEEEEEecCCeEEEEECCCeEEE-ECCCC
Confidence            334579999996  555664443355 3333332 35544321  01234578999998877666667775543 33334


Q ss_pred             cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC-CCeEEEEECCCcEEEEECCCcceEEEe-ec
Q 013717          173 KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN-NGLIYSVSWDKSLKIWRASDLRCLESI-KA  250 (437)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~  250 (437)
                      +.........                           .+...+..+.+. +..++.++.+|.|..- ...++.-... ..
T Consensus       109 ~tW~~~~~~~---------------------------~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~  160 (327)
T 2xbg_A          109 QSWSQIPLDP---------------------------KLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQE  160 (327)
T ss_dssp             SSCEECCCCT---------------------------TCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECS
T ss_pred             CCceECcccc---------------------------CCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecC
Confidence            4333222110                           012234555553 3555556666654332 1223322222 23


Q ss_pred             ccccEEEEEEecCCeEEEEeCCCeEEE-ecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 013717          251 HEDAVNAVAVSAGGTVYTGSADRKIRV-WAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDS  329 (437)
Q Consensus       251 ~~~~v~~~~~~~~~~l~~~~~dg~v~i-wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (437)
                      ....+..+++.+++.++..+.+|.+.. .|-  +...++.+.  ......+..+.+.++++.++ ++.+|.+++.+...+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G  235 (327)
T 2xbg_A          161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNS  235 (327)
T ss_dssp             CCCCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEE
T ss_pred             CCcceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCC
Confidence            456789999999888555555555544 331  123333332  23456788999999887654 456787777643222


Q ss_pred             ccceEEeeee-cccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEE
Q 013717          330 ANHMVVTGAL-RGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVF  407 (437)
Q Consensus       330 ~~~~~~~~~~-~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~  407 (437)
                      +. ....... ......+..+.+.++ .++.++.+|.| ++....++.+..+.........+.++.|.+++      .++
T Consensus       236 ~t-W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~------~~~  307 (327)
T 2xbg_A          236 EN-WGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD------QGF  307 (327)
T ss_dssp             EE-ECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT------EEE
T ss_pred             Ce-eEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC------ceE
Confidence            21 1111100 012234667766533 44445557777 45555566555443332344678889887554      477


Q ss_pred             EecCCCcEEEEee
Q 013717          408 SGSLDGEIRAWQV  420 (437)
Q Consensus       408 s~~~dg~i~iw~~  420 (437)
                      .++.+|.|.-++-
T Consensus       308 ~~G~~G~i~~~~~  320 (327)
T 2xbg_A          308 ILGQKGILLRYVT  320 (327)
T ss_dssp             EECSTTEEEEECC
T ss_pred             EEcCCceEEEEcC
Confidence            7888997766653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.71  E-value=1.3e-05  Score=76.24  Aligned_cols=200  Identities=10%  Similarity=-0.004  Sum_probs=112.9

Q ss_pred             eCCEEEEEec-C-eEEEEeC-CCCceeeeeccccCCC-Cc-----ccEEEEEEeCCeEEEEecCCeEEEEeCCCCccccc
Q 013717          107 HHNFLYAASS-H-EINVYDR-TGTTWTSINTFNDNDS-SS-----GSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKL  177 (437)
Q Consensus       107 ~~~~l~s~~~-d-~v~vwd~-~~~~~~~~~~~~~~~~-h~-----~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  177 (437)
                      .+..++.++. + .|.-+|. .+++..=......... +.     ..-..+++.++.++.++.|+.|..+|..+++....
T Consensus        61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~  140 (571)
T 2ad6_A           61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWE  140 (571)
T ss_dssp             ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence            3666666666 6 8888998 7764322222110000 00     00123455677888999999999999999876544


Q ss_pred             ccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEEC------CCcEEEEECCCcceEEEeecc
Q 013717          178 KTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSW------DKSLKIWRASDLRCLESIKAH  251 (437)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~  251 (437)
                      .........                     +.....++    +....+++++.      ++.|..+|.++++.+..+...
T Consensus       141 ~~~~~~~~~---------------------~~~~~~P~----v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~  195 (571)
T 2ad6_A          141 VEVCDPKVG---------------------STLTQAPF----VAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT  195 (571)
T ss_dssp             EECCCGGGT---------------------CBCCSCCE----EETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             ecCCCCCcc---------------------ceeccCCE----EECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccC
Confidence            321100000                     00011111    12356666655      799999999999998877632


Q ss_pred             ccc-------------------------------------E-EEEEEecCC-eEEEEeCC----------------CeEE
Q 013717          252 EDA-------------------------------------V-NAVAVSAGG-TVYTGSAD----------------RKIR  276 (437)
Q Consensus       252 ~~~-------------------------------------v-~~~~~~~~~-~l~~~~~d----------------g~v~  276 (437)
                      ...                                     + ..+++.++. .++.+..+                +.|.
T Consensus       196 ~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~  275 (571)
T 2ad6_A          196 GSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIW  275 (571)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEE
T ss_pred             CCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEE
Confidence            110                                     0 124556644 45555532                3588


Q ss_pred             EecCCCCcccceeeEEeeCc--------cccEEEEEEccCCC---EEEEEeCCCcEEEEECCCCccceE
Q 013717          277 VWAKPFNEKRHALIATLEKH--------KSAVNALALSDDGT---VLFSGACDRSILVWDREDSANHMV  334 (437)
Q Consensus       277 iwd~~~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~  334 (437)
                      .+|.+++...+...  ...|        ..++. +....+|+   .++.++.+|.++++|..+++....
T Consensus       276 Ald~~tG~~~W~~~--~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~  341 (571)
T 2ad6_A          276 GRDLDTGMAKWGYQ--KTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             EEETTTCCEEEEEE--SSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             EEecCCCcEEEEec--CCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEee
Confidence            88887665332221  1111        12222 33334774   677888999999999998876544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.71  E-value=5.5e-06  Score=68.73  Aligned_cols=183  Identities=12%  Similarity=0.066  Sum_probs=117.8

Q ss_pred             CcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeecccccE--EEEEEecCCeEEEEeCCCeEEEecCCCCccccee
Q 013717          213 DAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAV--NAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHAL  289 (437)
Q Consensus       213 ~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  289 (437)
                      .....+.|+. .++.+.+.+|.|+++|+++++.+..+ . ....  ..+++..+...+..-.++.+.+||..+.    +.
T Consensus        55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl----~~  128 (268)
T 3nok_A           55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPP----QR  128 (268)
T ss_dssp             CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSSCEEEEESSSCEEEEEETTTT----EE
T ss_pred             cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCCEEEEEEccCCEEEEEECCcC----cE
Confidence            3457888888 55666677889999999999988887 2 2333  3355543322555667899999987654    35


Q ss_pred             eEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccc-ccceEEEEeeCCEEEEEe-CCCcEEE
Q 013717          290 IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH-GKAILCLINVAGLLMSGS-ADRTVRI  367 (437)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~l~~~~-~dg~i~i  367 (437)
                      +.++..... -..++  +|++.|+.+..++.|+++|..+.+....+.-...+. -..+..+.+.+..|.+.. .+..|.+
T Consensus       129 ~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~v  205 (268)
T 3nok_A          129 ERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLE  205 (268)
T ss_dssp             EEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEE
T ss_pred             EEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEE
Confidence            555553222 23333  578888888889999999998876443332221111 113355666555555554 5778999


Q ss_pred             eeCCCCCCeeeeeeecC-------------CCCCeeEEEEEccCCCCceEEEEEecC
Q 013717          368 WQRGSDGRFGCLAVLEG-------------HTKPVKSLTAVTEEGQNGVVSVFSGSL  411 (437)
Q Consensus       368 wd~~~~~~~~~~~~~~~-------------h~~~v~~l~~~~~~~~~~~~~l~s~~~  411 (437)
                      .|..+++   .+..+..             -..-.+.||+.|+.+.    +++||-.
T Consensus       206 IDp~TG~---V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~r----lfVTGK~  255 (268)
T 3nok_A          206 IDPATGT---VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGR----IFMTGKL  255 (268)
T ss_dssp             ECTTTCB---EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCC----EEEEETT
T ss_pred             EeCCCCc---EEEEEECCCCcccccccccCcCCceEEEEEcCCCCE----EEEeCCC
Confidence            9999887   3333221             1246799999998764    7777744

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.69  E-value=3.5e-05  Score=63.42  Aligned_cols=192  Identities=13%  Similarity=0.058  Sum_probs=120.4

Q ss_pred             CcEEEEEeCCCeEE-EEECC--CcEEEEECCCcceEEEeecccc-cEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc
Q 013717          213 DAVTGLAVNNGLIY-SVSWD--KSLKIWRASDLRCLESIKAHED-AVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH  287 (437)
Q Consensus       213 ~~v~~~~~~~~~l~-~~~~d--g~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~  287 (437)
                      .....+.|+++.|+ +.+.+  ..|+.+|+.+++.+..+..... .-..+++. .++ ++..-.++.+.+||..+.    
T Consensus        21 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl----   95 (243)
T 3mbr_X           21 AFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATL----   95 (243)
T ss_dssp             CCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTT----
T ss_pred             cccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcC----
Confidence            45678999885544 44444  4899999999999988863322 12334444 344 555667899999987654    


Q ss_pred             eeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccc-cceEEEEeeCCEEEEEe-CCCcE
Q 013717          288 ALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHG-KAILCLINVAGLLMSGS-ADRTV  365 (437)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~l~~~~-~dg~i  365 (437)
                      +.+.++..... -..+  .++++.|+.+..++.|.++|..+.+....+.-...+.. ..+..+.+.+..|.+.. .+..|
T Consensus        96 ~~~~ti~~~~~-Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I  172 (243)
T 3mbr_X           96 TPRARFRYPGE-GWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRI  172 (243)
T ss_dssp             EEEEEEECSSC-CCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEE
T ss_pred             cEEEEEeCCCC-ceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeE
Confidence            45666653322 2333  45777777777899999999988764433322211111 23455666666455544 57789


Q ss_pred             EEeeCCCCCCeeeeeeec-------------CCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          366 RIWQRGSDGRFGCLAVLE-------------GHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       366 ~iwd~~~~~~~~~~~~~~-------------~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      .+.|..+++   .+..+.             .-..-.+.|++.|+.+    ++++||-.=  =++|.++
T Consensus       173 ~vIDp~tG~---V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~----~lfVTGK~w--p~~~~v~  232 (243)
T 3mbr_X          173 ARIDPASGK---VVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD----RLFVTGKRW--PMLYEIR  232 (243)
T ss_dssp             EEECTTTCB---EEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT----EEEEEETTC--SEEEEEE
T ss_pred             EEEECCCCC---EEEEEECCcCccccccccCCcCCceEEEEEcCCCC----EEEEECCCC--CcEEEEE
Confidence            999999987   333322             1123568999999876    477777543  3444444

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.66  E-value=5.9e-06  Score=73.44  Aligned_cols=225  Identities=9%  Similarity=0.054  Sum_probs=124.5

Q ss_pred             CccCCeEEEEee--CCEEEEEec-----C-eEEEEeCCCCceeeeeccc-cCCCCcccEEEEEEeCC--e-EEEEe---c
Q 013717           96 GHKLPIGCIAVH--HNFLYAASS-----H-EINVYDRTGTTWTSINTFN-DNDSSSGSVKSVTFCDG--K-IFTAH---Q  160 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~-----d-~v~vwd~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~--~-l~s~~---~  160 (437)
                      +|...+..++++  ++++++-..     + .|.+||+.+++......+. ....+...+..++++++  . +++..   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            466789999998  555554433     5 9999999986533322221 11123456789999843  3 45544   6


Q ss_pred             CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCC-cEEEE
Q 013717          161 DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDK-SLKIW  237 (437)
Q Consensus       161 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg-~i~iw  237 (437)
                      ++.|.+||+.+++....+...+........+......+......... ......+..+++++  +.|+.+..++ .|..+
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~-~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~  222 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTV-IRPHLGVNGIVLDAENEWLYLSPMHSTSMYRI  222 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCE-ECCCCCEEEEEECTTSCEEEEEESSCSEEEEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCce-eceecccceeEeccCCCEEEEEeCCCCeEEEE
Confidence            78999999987765443321000000000000000000000000000 00123468899998  5788777665 44444


Q ss_pred             ECC---Ccc-----eEE--EeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC-ccccEEEEEE
Q 013717          238 RAS---DLR-----CLE--SIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK-HKSAVNALAL  305 (437)
Q Consensus       238 d~~---~~~-----~~~--~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~  305 (437)
                      +..   .+.     ...  ...++......++++++|. +++...++.|.+||...+.    ....... ....+..++|
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~----~~~~~~~~~~~~p~~va~  298 (343)
T 2qe8_A          223 KSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA----YKLLVTDEKLSWTDSFNF  298 (343)
T ss_dssp             EHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE----EEEEEECGGGSCEEEEEE
T ss_pred             EHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC----EEEEEECCceecCCeeEE
Confidence            431   110     000  1112334566789999999 6667778999999873221    2112221 2456899999


Q ss_pred             ccCCCEEEEEeCCCcEEEEE
Q 013717          306 SDDGTVLFSGACDRSILVWD  325 (437)
Q Consensus       306 ~~~~~~l~~~~~dg~i~i~d  325 (437)
                      .++|+++++.+..+.+.+|.
T Consensus       299 ~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          299 GSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             CTTSCEEEEECCGGGSGGGB
T ss_pred             CCCCcEEEEeCccccccccc
Confidence            99998888877666554444

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.65  E-value=0.00015  Score=69.05  Aligned_cols=165  Identities=12%  Similarity=0.007  Sum_probs=99.5

Q ss_pred             CcEEEEECCCcceEEEeec--cc--------ccEEEEEEe-cCC---e-EEEEeCCCeEEEecCCCCcccceeeEEeeCc
Q 013717          232 KSLKIWRASDLRCLESIKA--HE--------DAVNAVAVS-AGG---T-VYTGSADRKIRVWAKPFNEKRHALIATLEKH  296 (437)
Q Consensus       232 g~i~iwd~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~---~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  296 (437)
                      +.|..+|..+++.+..++.  |.        .++. +... .+|   . ++.++.+|.+.++|..+++..    ..+...
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l----w~~~~~  365 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQ----NAFPFV  365 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEE----EEEESS
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEe----cccccc
Confidence            6899999999999988763  21        1221 2221 356   3 778899999999998765432    111111


Q ss_pred             c-------------cc--------------------------------EEEEEEccCCCEEEEEe---------------
Q 013717          297 K-------------SA--------------------------------VNALALSDDGTVLFSGA---------------  316 (437)
Q Consensus       297 ~-------------~~--------------------------------i~~~~~~~~~~~l~~~~---------------  316 (437)
                      .             .+                                -..++++|+..++++..               
T Consensus       366 ~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~  445 (582)
T 1flg_A          366 DNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYT  445 (582)
T ss_dssp             SCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCC
T ss_pred             cCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeeccccccc
Confidence            0             00                                01356677655555432               


Q ss_pred             ------------------CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeee
Q 013717          317 ------------------CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGC  378 (437)
Q Consensus       317 ------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  378 (437)
                                        .+|.|..||+.+++.............   ..+...+.+++.|+.||.++.||.++++   .
T Consensus       446 ~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~---g~~~tagglvf~g~~dg~l~A~D~~tG~---~  519 (582)
T 1flg_A          446 KGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWA---GVLATAGNLVFTGTGDGYFKAFDAKSGK---E  519 (582)
T ss_dssp             TTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCS---CCEEETTTEEEEECTTSEEEEEETTTCC---E
T ss_pred             CCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcc---cceEeCCCEEEEECCCCcEEEEECCCCC---E
Confidence                              368899999999886665543221111   1233457788889999999999999988   5


Q ss_pred             eeeecCCCCCe-eEEEEEccCCCCceEEEEEecC
Q 013717          379 LAVLEGHTKPV-KSLTAVTEEGQNGVVSVFSGSL  411 (437)
Q Consensus       379 ~~~~~~h~~~v-~~l~~~~~~~~~~~~~l~s~~~  411 (437)
                      +..++...+.+ .-+.+..++.    +|++..+.
T Consensus       520 lW~~~~~~g~~a~P~~y~~~G~----qYv~~~~G  549 (582)
T 1flg_A          520 LWKFQTGSGIVSPPITWEQDGE----QYLGVTVG  549 (582)
T ss_dssp             EEEEECSSCCCSCCEEEEETTE----EEEEEEEC
T ss_pred             EEEecCCCCcccCceEEEECCE----EEEEEEcc
Confidence            55554432221 2255656654    36655443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.65  E-value=2.3e-05  Score=74.51  Aligned_cols=201  Identities=13%  Similarity=0.040  Sum_probs=112.8

Q ss_pred             eCCEEEEEec-C-eEEEEeC-CCCceeeeeccccCCCCc------ccEEEEEE--eCCe----EEEEecCCeEEEEeCCC
Q 013717          107 HHNFLYAASS-H-EINVYDR-TGTTWTSINTFNDNDSSS------GSVKSVTF--CDGK----IFTAHQDCKIRVWQLTP  171 (437)
Q Consensus       107 ~~~~l~s~~~-d-~v~vwd~-~~~~~~~~~~~~~~~~h~------~~v~~l~~--~~~~----l~s~~~dg~i~iwd~~~  171 (437)
                      .+..|+.++. + .|.-+|. .+++..=...........      .....+++  .++.    ++.++.|+.|..+|..+
T Consensus        61 ~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T  140 (599)
T 1w6s_A           61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET  140 (599)
T ss_dssp             ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred             ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCC
Confidence            3666777776 6 8888888 776432222111000000      01123455  4555    88999999999999999


Q ss_pred             CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEE------CCCcEEEEECCCcceE
Q 013717          172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVS------WDKSLKIWRASDLRCL  245 (437)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~  245 (437)
                      ++.............                     +.-...++    +....+++++      .+|.|+.+|.++++.+
T Consensus       141 G~~~W~~~~~~~~~~---------------------~~~~ssP~----v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~  195 (599)
T 1w6s_A          141 GETVWKVENSDIKVG---------------------STLTIAPY----VVKDKVIIGSSGAELGVRGYLTAYDVKTGEQV  195 (599)
T ss_dssp             CCEEEEEECCCGGGT---------------------CBCCSCCE----EETTEEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred             CCEEEeecCCCCCcc---------------------ceeecCCE----EECCEEEEEecccccCCCCeEEEEECCCCcEE
Confidence            976544321100000                     00011111    1234555555      3899999999999998


Q ss_pred             EEeeccccc-------------------------------------E-EEEEEecCCe-EEEEeCC--------------
Q 013717          246 ESIKAHEDA-------------------------------------V-NAVAVSAGGT-VYTGSAD--------------  272 (437)
Q Consensus       246 ~~~~~~~~~-------------------------------------v-~~~~~~~~~~-l~~~~~d--------------  272 (437)
                      ..+......                                     + ..+++.++.. ++.+..+              
T Consensus       196 W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~  275 (599)
T 1w6s_A          196 WRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNK  275 (599)
T ss_dssp             EEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred             EEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCcc
Confidence            877632111                                     0 1234555444 6666655              


Q ss_pred             --CeEEEecCCCCcccceeeEEeeCcc--------ccEEEEEEc-cCC---CEEEEEeCCCcEEEEECCCCccceEE
Q 013717          273 --RKIRVWAKPFNEKRHALIATLEKHK--------SAVNALALS-DDG---TVLFSGACDRSILVWDREDSANHMVV  335 (437)
Q Consensus       273 --g~v~iwd~~~~~~~~~~~~~~~~~~--------~~i~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~  335 (437)
                        +.|..+|.+++...+..  ....|.        .++. +... .+|   ..++.++.+|.++++|.++++.....
T Consensus       276 y~~sv~Ald~~TG~~~W~~--q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~  349 (599)
T 1w6s_A          276 WTMTIFGRDADTGEAKFGY--QKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN  349 (599)
T ss_dssp             TSSEEEEEETTTCCEEEEE--ESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ccceEEEEeCCCCceeeEe--ecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence              37888888766533321  111121        2222 2322 467   46778899999999999998765543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.64  E-value=1.5e-06  Score=77.30  Aligned_cols=261  Identities=11%  Similarity=0.002  Sum_probs=147.7

Q ss_pred             eeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEe----------cC-eEEEEeCCCCceeeeeccccCCCC---
Q 013717           79 TINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAAS----------SH-EINVYDRTGTTWTSINTFNDNDSS---  141 (437)
Q Consensus        79 ~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~----------~d-~v~vwd~~~~~~~~~~~~~~~~~h---  141 (437)
                      ++.+.|.......-..- |.. +  .++++  +++++.+.          .+ .|.+||..++  +.+.++....+.   
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~--~vv~~I~v~~~~~~~  121 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFS  121 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC--CEEEEEEETTSCSCC
T ss_pred             eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--CEEEEEECCCccccc
Confidence            77788887755444443 654 4  68888  77777775          24 9999999995  444444211000   


Q ss_pred             -cccEEEEEEeCCe--EEEEec--CCeEEE--EeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCc
Q 013717          142 -SGSVKSVTFCDGK--IFTAHQ--DCKIRV--WQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA  214 (437)
Q Consensus       142 -~~~v~~l~~~~~~--l~s~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (437)
                       ......+++++++  ++.+..  +..+.+  +|..+   ...+. .+                            .  .
T Consensus       122 ~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~-v~----------------------------~--~  167 (368)
T 1mda_H          122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTK-SA----------------------------S--C  167 (368)
T ss_dssp             BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEE-CS----------------------------S--C
T ss_pred             cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEE-CC----------------------------C--c
Confidence             1345688999775  666653  467888  88865   11111 00                            0  0


Q ss_pred             EEEEEeCC-CeEEEEECCCcEEEEECCC-----cceEE----EeecccccEEEEEEecCC-eEEEEeCCCeEEEecCCCC
Q 013717          215 VTGLAVNN-GLIYSVSWDKSLKIWRASD-----LRCLE----SIKAHEDAVNAVAVSAGG-TVYTGSADRKIRVWAKPFN  283 (437)
Q Consensus       215 v~~~~~~~-~~l~~~~~dg~i~iwd~~~-----~~~~~----~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~iwd~~~~  283 (437)
                      + .+...+ ..+++.+.||.+.+.|+.+     ++...    .+.....+.   + .+++ .++..+. +.|.+.|+...
T Consensus       168 ~-~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~  241 (368)
T 1mda_H          168 F-HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAA  241 (368)
T ss_dssp             C-CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSS
T ss_pred             e-EEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCC
Confidence            0 011112 4555667788888888876     43321    111122333   3 4444 4666666 99999988543


Q ss_pred             cccceeeEEeeC-------c---cccEEEEEEccCCCEEEEEeC---------CCcEEEEECCCCccceEEeeeeccccc
Q 013717          284 EKRHALIATLEK-------H---KSAVNALALSDDGTVLFSGAC---------DRSILVWDREDSANHMVVTGALRGHGK  344 (437)
Q Consensus       284 ~~~~~~~~~~~~-------~---~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~  344 (437)
                      ..  +.+..+..       +   ......++++||+++++++..         ++.+.++|+.+.+....    +.... 
T Consensus       242 ~~--~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~----i~vg~-  314 (368)
T 1mda_H          242 GA--TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP----ISNGH-  314 (368)
T ss_dssp             CC--EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC----CEEEE-
T ss_pred             cc--eEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEE----EECCC-
Confidence            21  11221110       0   011112689999998887643         23567999988763322    22111 


Q ss_pred             ceEEEEe--eCC-EEEEEe-CCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEE
Q 013717          345 AILCLIN--VAG-LLMSGS-ADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAV  395 (437)
Q Consensus       345 ~i~~~~~--~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~  395 (437)
                      ....+.+  ++. ++++.. .++.|.++|+.+.+   .+.++..... -..+++.
T Consensus       315 ~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k---vv~~I~vg~~-P~~i~~~  365 (368)
T 1mda_H          315 DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ---DQSSVELDKG-PESLSVQ  365 (368)
T ss_dssp             EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE---EEEECCCCSC-CCEEECC
T ss_pred             CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc---EEEEEECCCC-CCEEEee
Confidence            2444444  455 566666 59999999999876   6666664433 3345443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.60  E-value=5.8e-06  Score=76.85  Aligned_cols=200  Identities=12%  Similarity=0.109  Sum_probs=119.7

Q ss_pred             EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe-C-C--CeEEEEE-
Q 013717          155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV-N-N--GLIYSVS-  229 (437)
Q Consensus       155 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~--~~l~~~~-  229 (437)
                      +++...++.|.+.|+.+.+....+. ++                            .......+++ . |  +++++++ 
T Consensus       105 fVnd~~~~rVavIdl~t~~~~~ii~-ip----------------------------~g~~phg~~~~~~p~~~~v~~~~~  155 (595)
T 1fwx_A          105 FMNDKANTRVARVRCDVMKCDAILE-IP----------------------------NAKGIHGLRPQKWPRSNYVFCNGE  155 (595)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEE-CS----------------------------SCCSEEEEEECCSSBCSEEEEEEC
T ss_pred             EEEcCCCCEEEEEECCCceEeeEEe-CC----------------------------CCCCCcceeeeecCCCcEEEEecc
Confidence            5555667789999999988666442 32                            2234556665 2 4  6666664 


Q ss_pred             -----------------CCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCC------------------
Q 013717          230 -----------------WDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADR------------------  273 (437)
Q Consensus       230 -----------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg------------------  273 (437)
                                       .++.+.++|..+.+...++.-.. .-..++++|+|+ +++.+.+.                  
T Consensus       156 ~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~  234 (595)
T 1fwx_A          156 DETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIV  234 (595)
T ss_dssp             SCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEE
T ss_pred             cccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEE
Confidence                             24678999999998888876322 346677899988 55554332                  


Q ss_pred             --------------------eEEEecCCCCccccee-eEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCcc
Q 013717          274 --------------------KIRVWAKPFNEKRHAL-IATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSAN  331 (437)
Q Consensus       274 --------------------~v~iwd~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~  331 (437)
                                          .|.+.|.+...  ... +..+. -.....++.++|||+++++++ .+.+|.++|+.+.+.
T Consensus       235 V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~--~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~  311 (595)
T 1fwx_A          235 VFNIAEIEKAIAAGDYQELNGVKVVDGRKEA--SSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDA  311 (595)
T ss_dssp             EEEHHHHHHHHHHTCSEEETTEEEEECSGGG--CCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHH
T ss_pred             EeeccceeEeccCCCeeEECcEEEEeCcccC--CceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccc
Confidence                                24555544311  111 22222 223457899999999877765 588999999985321


Q ss_pred             c--------eEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCC-------CCeeeeeeecCCCCC
Q 013717          332 H--------MVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSD-------GRFGCLAVLEGHTKP  388 (437)
Q Consensus       332 ~--------~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~h~~~  388 (437)
                      .        ........ -......++|+++  ..++.-.|++|.+||+...       +....+.++..|-.+
T Consensus       312 ~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp  384 (595)
T 1fwx_A          312 VFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP  384 (595)
T ss_dssp             HHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred             ccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc
Confidence            0        00111111 1223455555544  4455667999999998761       112466666666543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.60  E-value=2.5e-05  Score=74.36  Aligned_cols=202  Identities=12%  Similarity=0.036  Sum_probs=110.8

Q ss_pred             eCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCc----ccEEEEEEeCCeEEEEecCCeEEEEeCCCCccccccccc
Q 013717          107 HHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSS----GSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTL  181 (437)
Q Consensus       107 ~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~----~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  181 (437)
                      .+..++.++.+ .|.-+|..+++..=...........    ..-..+++.++.++.++.|+.|..+|..+++........
T Consensus        67 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~  146 (582)
T 1flg_A           67 SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             ECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence            46666666664 7888898886432222211000000    001233456778889999999999999999865443321


Q ss_pred             CccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC---CC-eEEEEE------CCCcEEEEECCCcceEEEeecc
Q 013717          182 PTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN---NG-LIYSVS------WDKSLKIWRASDLRCLESIKAH  251 (437)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~-~l~~~~------~dg~i~iwd~~~~~~~~~~~~~  251 (437)
                      .....                     +.....++.  .-.   .+ .++++.      .+|.|..+|..+++.+......
T Consensus       147 ~~~~~---------------------~~~~~sP~v--~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~  203 (582)
T 1flg_A          147 DHGAG---------------------YTMTGAPTI--VKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFV  203 (582)
T ss_dssp             CGGGT---------------------CBCCSCCEE--EECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESS
T ss_pred             CCCcC---------------------cccccCCEE--eCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCC
Confidence            10000                     000111111  111   01 555554      3789999999999988765421


Q ss_pred             cccE-----------------------------------------EEEEEecCCe-EEEEeC------------------
Q 013717          252 EDAV-----------------------------------------NAVAVSAGGT-VYTGSA------------------  271 (437)
Q Consensus       252 ~~~v-----------------------------------------~~~~~~~~~~-l~~~~~------------------  271 (437)
                      ...+                                         ..+++.|+.. ++.+..                  
T Consensus       204 ~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~  283 (582)
T 1flg_A          204 EGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPH  283 (582)
T ss_dssp             TTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCST
T ss_pred             ccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCccc
Confidence            1000                                         1234555544 555552                  


Q ss_pred             --C----CeEEEecCCCCcccceeeEEeeCcc--------ccEEEEEEc-cCCC---EEEEEeCCCcEEEEECCCCccce
Q 013717          272 --D----RKIRVWAKPFNEKRHALIATLEKHK--------SAVNALALS-DDGT---VLFSGACDRSILVWDREDSANHM  333 (437)
Q Consensus       272 --d----g~v~iwd~~~~~~~~~~~~~~~~~~--------~~i~~~~~~-~~~~---~l~~~~~dg~i~i~d~~~~~~~~  333 (437)
                        |    +.|..+|..+++..+..  ....|.        .++. +... .+|+   .++.++.+|.++++|.++++...
T Consensus       284 ~~d~~~~~~v~AlD~~TG~~~W~~--q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw  360 (582)
T 1flg_A          284 DYDSLYTSGQVGVDPSSGEVKWFY--QHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQN  360 (582)
T ss_dssp             TCCCTTCSEEEEECTTTCCEEEEE--ESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccCCcccceEEEEeCCCCCEEEEE--eCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEec
Confidence              2    57999988776543322  111121        2222 2222 4674   78889999999999999887654


Q ss_pred             E
Q 013717          334 V  334 (437)
Q Consensus       334 ~  334 (437)
                      .
T Consensus       361 ~  361 (582)
T 1flg_A          361 A  361 (582)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.59  E-value=6.2e-05  Score=66.11  Aligned_cols=249  Identities=14%  Similarity=0.092  Sum_probs=135.2

Q ss_pred             cEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717          144 SVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN  221 (437)
Q Consensus       144 ~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  221 (437)
                      ...++++.++.  ++++..++.|..|+..+++..............    ......       ..........+.++++.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~-------~~~~~~~~~~p~gi~~~   88 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKA----FCENST-------DAEKRPLCGRTYDISYN   88 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHH----HHTTCC-------CGGGHHHHCCEEEEEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEeccccccccc----cccccc-------chhccccCCCCceEEEc
Confidence            45667787543  888888899999988764322110000000000    000000       00000012346788887


Q ss_pred             C--CeEEEEECCCcEEEEECCCcceEEEeec-----ccccEEEEEEec-CCeEEEEeC------------------CCeE
Q 013717          222 N--GLIYSVSWDKSLKIWRASDLRCLESIKA-----HEDAVNAVAVSA-GGTVYTGSA------------------DRKI  275 (437)
Q Consensus       222 ~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~l~~~~~------------------dg~v  275 (437)
                      +  ..|+.+...+.|..+|..+++. ..+..     .......+++.+ +|.+..+..                  ++.|
T Consensus        89 ~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v  167 (322)
T 2fp8_A           89 LQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRL  167 (322)
T ss_dssp             TTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred             CCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceE
Confidence            4  6788787767788998776543 22211     123478899999 898555543                  3678


Q ss_pred             EEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE-eCCCcEEEEECCCCcc-ceEEeeeecccccceEEEEee-
Q 013717          276 RVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG-ACDRSILVWDREDSAN-HMVVTGALRGHGKAILCLINV-  352 (437)
Q Consensus       276 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~i~~~~~~-  352 (437)
                      ..||.....    . ..+.........++++|+|+.|+.+ ..++.|.+|++..... .........+    ...+..+ 
T Consensus       168 ~~~d~~~~~----~-~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g----P~gi~~d~  238 (322)
T 2fp8_A          168 IKYDPSTKE----T-TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN----PGNIKRNA  238 (322)
T ss_dssp             EEEETTTTE----E-EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS----EEEEEECT
T ss_pred             EEEeCCCCE----E-EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC----CCCeEECC
Confidence            888764332    1 1111122345679999999866655 5568999999875321 1111111222    3445554 


Q ss_pred             -CCEEEEEeC----------CCcEEEeeCCCCCCeeeeeeecCC----CCCeeEEEEEccCCCCceEEEEEecCCCcEEE
Q 013717          353 -AGLLMSGSA----------DRTVRIWQRGSDGRFGCLAVLEGH----TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRA  417 (437)
Q Consensus       353 -~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  417 (437)
                       +++.++...          .+.|..+|.. ++   .+..+...    ...++.+++. ++     +++++...++.|..
T Consensus       239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~---~~~~~~~~~g~~~~~~~~~~~~-~g-----~L~v~~~~~~~i~~  308 (322)
T 2fp8_A          239 DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GN---ILEVIPLPPPFAGEHFEQIQEH-DG-----LLYIGTLFHGSVGI  308 (322)
T ss_dssp             TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SC---EEEEEECCTTTTTSCCCEEEEE-TT-----EEEEECSSCSEEEE
T ss_pred             CCCEEEEecCcccccccCCCccEEEEECCC-CC---EEEEEECCCCCccccceEEEEe-CC-----EEEEeecCCCceEE
Confidence             444444333          4568888764 33   34444322    2456777663 33     36777777889999


Q ss_pred             EeeccC
Q 013717          418 WQVSVS  423 (437)
Q Consensus       418 w~~~~~  423 (437)
                      +++...
T Consensus       309 ~~~~~~  314 (322)
T 2fp8_A          309 LVYDKK  314 (322)
T ss_dssp             EEC---
T ss_pred             Eecccc
Confidence            998654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.56  E-value=7.5e-05  Score=65.57  Aligned_cols=241  Identities=12%  Similarity=0.115  Sum_probs=134.9

Q ss_pred             CCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccC--------------CCCcccEEEEEEeC-C-eEEEEe
Q 013717           99 LPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDN--------------DSSSGSVKSVTFCD-G-KIFTAH  159 (437)
Q Consensus        99 ~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~--------------~~h~~~v~~l~~~~-~-~l~s~~  159 (437)
                      ....+++++  +++++++..+ .|..||..++...........              ......+..|++.+ + .|+.+.
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            344667776  6767888777 999999887544332210000              00123578999985 4 477776


Q ss_pred             cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC-------
Q 013717          160 QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW-------  230 (437)
Q Consensus       160 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-------  230 (437)
                      ..+.|..+|..+++..........                          ........+++.+  ..++.+..       
T Consensus        99 ~~~~i~~~d~~~g~~~~~~~~~~~--------------------------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~  152 (322)
T 2fp8_A           99 CYYHLSVVGSEGGHATQLATSVDG--------------------------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDR  152 (322)
T ss_dssp             TTTEEEEECTTCEECEEEESEETT--------------------------EECSCEEEEEECTTTCCEEEEESCSSCCTT
T ss_pred             CCCCEEEEeCCCCEEEEecccCCC--------------------------CcccccceEEEecCCCEEEEECCccccccc
Confidence            666688888765432111110000                          0112356677765  34444432       


Q ss_pred             -----------CCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEE-eCCCeEEEecCCCCcc-cceeeEEeeCc
Q 013717          231 -----------DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTG-SADRKIRVWAKPFNEK-RHALIATLEKH  296 (437)
Q Consensus       231 -----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~-~~dg~v~iwd~~~~~~-~~~~~~~~~~~  296 (437)
                                 ++.|..||..+++...... .......++++|++. ++++ ...+.|.+|++..... .......   .
T Consensus       153 ~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~  228 (322)
T 2fp8_A          153 GVQQIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---I  228 (322)
T ss_dssp             CHHHHHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---C
T ss_pred             ccceehcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---C
Confidence                       3678888887665433222 223456799999987 5554 5668999998864221 1112221   2


Q ss_pred             cccEEEEEEccCCCEEEEEeC----------CCcEEEEECCCCccceEEeeeeccc-ccceEEEEeeCC-EEEEEeCCCc
Q 013717          297 KSAVNALALSDDGTVLFSGAC----------DRSILVWDREDSANHMVVTGALRGH-GKAILCLINVAG-LLMSGSADRT  364 (437)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~-~l~~~~~dg~  364 (437)
                      .+ ...+++.++|++.++...          .+.|..+|.. ++....+. ...+. ...+..+...+. ++++....+.
T Consensus       229 ~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~-~~~g~~~~~~~~~~~~~g~L~v~~~~~~~  305 (322)
T 2fp8_A          229 PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIP-LPPPFAGEHFEQIQEHDGLLYIGTLFHGS  305 (322)
T ss_dssp             SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEE-CCTTTTTSCCCEEEEETTEEEEECSSCSE
T ss_pred             CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEE-CCCCCccccceEEEEeCCEEEEeecCCCc
Confidence            23 788999999987666544          4678888864 33222221 11111 123444555555 4444446778


Q ss_pred             EEEeeCCC
Q 013717          365 VRIWQRGS  372 (437)
Q Consensus       365 i~iwd~~~  372 (437)
                      |.++++..
T Consensus       306 i~~~~~~~  313 (322)
T 2fp8_A          306 VGILVYDK  313 (322)
T ss_dssp             EEEEEC--
T ss_pred             eEEEeccc
Confidence            99988764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.51  E-value=0.00035  Score=59.35  Aligned_cols=193  Identities=13%  Similarity=0.084  Sum_probs=116.6

Q ss_pred             cEEEEEeCC--CeEEEEE-CCCcEEEEECCCcceEEEeecccccEEEEEEecCC-e-EEEEeCCCeEEEecCCCCcccce
Q 013717          214 AVTGLAVNN--GLIYSVS-WDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG-T-VYTGSADRKIRVWAKPFNEKRHA  288 (437)
Q Consensus       214 ~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~dg~v~iwd~~~~~~~~~  288 (437)
                      .+.++++++  +.|+.+. .++.|..++.........+.........+++++++ . +++-...+.|.++++.....  .
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~--~  114 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR--R  114 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--E
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE--E
Confidence            467888876  5555554 56899999987665433333233568899999864 5 45555678999998763221  1


Q ss_pred             eeEEeeCccccEEEEEEccCCCEEEEEeC---CCcEEEEECCCCccceEEeeeecccccceEEEEeeC--CEE-EEEeCC
Q 013717          289 LIATLEKHKSAVNALALSDDGTVLFSGAC---DRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLL-MSGSAD  362 (437)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l-~~~~~d  362 (437)
                      .  ...........++++|++..|+.+..   .+.|..+++.... ...+.   .........+++++  +.| ++-...
T Consensus       115 ~--~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~---~~~~~~P~gia~d~~~~~lyv~d~~~  188 (267)
T 1npe_A          115 V--LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILA---QDNLGLPNGLTFDAFSSQLCWVDAGT  188 (267)
T ss_dssp             E--EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEE---CTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred             E--EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEE---ECCCCCCcEEEEcCCCCEEEEEECCC
Confidence            1  12222256789999997666655554   3688888886432 22221   11123345666653  444 455556


Q ss_pred             CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          363 RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       363 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      +.|.++|.....   ....+.+ ......|+..  ++    .++++....+.|..++..+++
T Consensus       189 ~~I~~~~~~g~~---~~~~~~~-~~~P~gi~~d--~~----~lyva~~~~~~v~~~d~~~g~  240 (267)
T 1npe_A          189 HRAECLNPAQPG---RRKVLEG-LQYPFAVTSY--GK----NLYYTDWKTNSVIAMDLAISK  240 (267)
T ss_dssp             TEEEEEETTEEE---EEEEEEC-CCSEEEEEEE--TT----EEEEEETTTTEEEEEETTTTE
T ss_pred             CEEEEEecCCCc---eEEEecC-CCCceEEEEe--CC----EEEEEECCCCeEEEEeCCCCC
Confidence            889999987533   2222222 2234566654  32    366666667899999987664

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.47  E-value=1.1e-05  Score=74.95  Aligned_cols=210  Identities=10%  Similarity=0.041  Sum_probs=121.1

Q ss_pred             eCCEEEEEecC--eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe--CCe--EEEEe------------------cCC
Q 013717          107 HHNFLYAASSH--EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC--DGK--IFTAH------------------QDC  162 (437)
Q Consensus       107 ~~~~l~s~~~d--~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~--l~s~~------------------~dg  162 (437)
                      .|++|+....+  .|.+.|+.+.+...+..+    .....+..+++.  |+.  +++++                  .++
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i----p~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~  175 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEI----PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  175 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEEC----SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeC----CCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence            37888887765  899999999654443344    233467788873  444  55553                  346


Q ss_pred             eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccc---eeeecC-CCcEEEEEe-----------CCCeEEE
Q 013717          163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKK---KLWIEH-GDAVTGLAV-----------NNGLIYS  227 (437)
Q Consensus       163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~v~~~~~-----------~~~~l~~  227 (437)
                      .+.++|.++.+....+..- . ...............+.....   ..+..- ......+.+           ..++...
T Consensus       176 ~vtvID~~t~~v~~qI~Vg-g-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i  253 (595)
T 1fwx_A          176 VFTAVDADKWEVAWQVLVS-G-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  253 (595)
T ss_dssp             EEEEEETTTTEEEEEEEES-S-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             eEEEEECCCCeEEEEEEeC-C-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence            7999999887654443321 1 112222222222222222111   000000 011111111           1122222


Q ss_pred             EECCCcEEEEECCC--cce-EEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcc--------cceeeEEee
Q 013717          228 VSWDKSLKIWRASD--LRC-LESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEK--------RHALIATLE  294 (437)
Q Consensus       228 ~~~dg~i~iwd~~~--~~~-~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~  294 (437)
                          +.|.+.|.++  ++. +..+.. .....++.++|||+  ++++..+.+|.++|+.....        .........
T Consensus       254 ----~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~  328 (595)
T 1fwx_A          254 ----NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  328 (595)
T ss_dssp             ----TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred             ----CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence                5599999998  555 555543 34567899999999  55566789999999874310        111233332


Q ss_pred             CccccEEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 013717          295 KHKSAVNALALSDDGTVLFSGACDRSILVWDRED  328 (437)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (437)
                       -......++|+|+|...++.-.|++|.+||+..
T Consensus       329 -vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          329 -LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             -CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             -CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence             345688999999995455666799999999976

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.45  E-value=0.00066  Score=61.12  Aligned_cols=231  Identities=12%  Similarity=0.059  Sum_probs=133.8

Q ss_pred             CeEEEEee-CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC--CeE-EEEecCCeEEEEeCCCCccc
Q 013717          100 PIGCIAVH-HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD--GKI-FTAHQDCKIRVWQLTPTKHH  175 (437)
Q Consensus       100 ~V~~l~~~-~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l-~s~~~dg~i~iwd~~~~~~~  175 (437)
                      .-.|.+.. ..+|+.+..+.|+..++.......+..      ....+..++|.+  +.| ++-...+.|..++++.....
T Consensus        78 ~~~C~~~~~~~~l~~~~~~~I~~i~~~~~~~~~~~~------~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~  151 (386)
T 3v65_B           78 RRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLN------NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE  151 (386)
T ss_dssp             SSCEEECSSCCEEEEECBSCEEEECTTSCCCEEEEC------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE
T ss_pred             CCeECCccccceeEeecCccceeeccCCCcEEEEec------CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE
Confidence            34455555 456665655588889988754333322      234578999984  334 44456788999988765322


Q ss_pred             ccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEE-EEECCCcEEEEECCCcceEEEeeccc
Q 013717          176 KLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIY-SVSWDKSLKIWRASDLRCLESIKAHE  252 (437)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~  252 (437)
                      ....                              ........+++++  +.|+ +-...+.|.+.++........+....
T Consensus       152 ~~~~------------------------------~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l  201 (386)
T 3v65_B          152 EVVS------------------------------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL  201 (386)
T ss_dssp             EEEC------------------------------SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSC
T ss_pred             EEEe------------------------------CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCC
Confidence            1111                              0112234566654  4444 44456788888876544333333334


Q ss_pred             ccEEEEEEecCCe-E-EEEeCC-CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCC
Q 013717          253 DAVNAVAVSAGGT-V-YTGSAD-RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDRED  328 (437)
Q Consensus       253 ~~v~~~~~~~~~~-l-~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  328 (437)
                      .....+++.|.+. | ++-... +.|..+++....    ........-.....|+++|++..|+.+. ..+.|..+|+..
T Consensus       202 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~----~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG----RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS----CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred             CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC----cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            5678999998554 4 444444 788888775322    1111222344578999998766665554 467899999875


Q ss_pred             CccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCC
Q 013717          329 SANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       329 ~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~  374 (437)
                      .. ...+..   ........++..++ ++++-...+.|..++..+++
T Consensus       278 ~~-~~~~~~---~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~  320 (386)
T 3v65_B          278 SH-RKAVIS---QGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGK  320 (386)
T ss_dssp             CS-CEEEEC---SSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             Ce-eEEEEE---CCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCc
Confidence            43 222221   11223455555555 55555567789888866655

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.44  E-value=0.00075  Score=59.84  Aligned_cols=232  Identities=13%  Similarity=0.074  Sum_probs=134.2

Q ss_pred             CCeEEEEee-CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC--CeEE-EEecCCeEEEEeCCCCcc
Q 013717           99 LPIGCIAVH-HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD--GKIF-TAHQDCKIRVWQLTPTKH  174 (437)
Q Consensus        99 ~~V~~l~~~-~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~-s~~~dg~i~iwd~~~~~~  174 (437)
                      +..+|.+.. ..+|+.+....|+..++.......+..      ....+..++|++  +.|+ +-...+.|..++++....
T Consensus        34 d~~~C~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~~~------~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~  107 (349)
T 3v64_C           34 DRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLN------NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV  107 (349)
T ss_dssp             TSSCEEESSSCCEEEEECBSCEEEECTTSCCEEEEEC------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCcccccccCceeEeecccceEEEeCCCCeeEEeec------CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc
Confidence            344566555 455555555578888887753333221      234578999984  3344 445678898898876532


Q ss_pred             cccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEE-EEECCCcEEEEECCCcceEEEeecc
Q 013717          175 HKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIY-SVSWDKSLKIWRASDLRCLESIKAH  251 (437)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~  251 (437)
                      .....                              ........+++++  +.|+ +-...+.|.+.++........+...
T Consensus       108 ~~~~~------------------------------~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~  157 (349)
T 3v64_C          108 EEVVS------------------------------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS  157 (349)
T ss_dssp             EEEEC------------------------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTT
T ss_pred             eEEEe------------------------------CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCC
Confidence            21111                              1112335666664  4444 4445678999998655433333333


Q ss_pred             cccEEEEEEecC-Ce-EEEEeCC-CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECC
Q 013717          252 EDAVNAVAVSAG-GT-VYTGSAD-RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDRE  327 (437)
Q Consensus       252 ~~~v~~~~~~~~-~~-l~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~  327 (437)
                      -.....++++|. +. +++-... +.|..++++....    .......-.....|+++|++..|+.+. ..+.|..+|+.
T Consensus       158 l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~----~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d  233 (349)
T 3v64_C          158 LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR----RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  233 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc----EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            456789999985 44 4444445 7888888764221    111122334678999998766665554 46789999987


Q ss_pred             CCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCC
Q 013717          328 DSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~  374 (437)
                      .... ..+..   ........++..++ ++++-...+.|..++..+++
T Consensus       234 G~~~-~~~~~---~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          234 GSHR-KAVIS---QGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             SCSC-EEEEC---SSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             CCce-EEEEe---CCCCCceEEEEECCEEEEecCCCCeEEEEEccCCC
Confidence            5432 22221   11223345555555 45555567788888865555

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.39  E-value=0.0011  Score=59.65  Aligned_cols=194  Identities=11%  Similarity=0.013  Sum_probs=116.4

Q ss_pred             CcEEEEEeCC--CeEEEE-ECCCcEEEEECCCcceEEEeecccccEEEEEEecC-Ce-EEEEeCCCeEEEecCCCCcccc
Q 013717          213 DAVTGLAVNN--GLIYSV-SWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAG-GT-VYTGSADRKIRVWAKPFNEKRH  287 (437)
Q Consensus       213 ~~v~~~~~~~--~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~-l~~~~~dg~v~iwd~~~~~~~~  287 (437)
                      ..+..++|++  +.|+.. ...+.|..+++........+.........+++.+. +. +++-...+.|.++++....   
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~---  192 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH---  192 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS---
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc---
Confidence            4577889885  555554 45688999998766544433333344567888874 45 4555667889998876432   


Q ss_pred             eeeEEeeCccccEEEEEEccCCCEEEEEeC-C-CcEEEEECCCCccceEEeeeecccccceEEEEee--CC-EEEEEeCC
Q 013717          288 ALIATLEKHKSAVNALALSDDGTVLFSGAC-D-RSILVWDREDSANHMVVTGALRGHGKAILCLINV--AG-LLMSGSAD  362 (437)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d  362 (437)
                       ....+.........++++|.+..|+.+.. . +.|..+++...... .+.   .........++++  +. ++++-...
T Consensus       193 -~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~---~~~~~~PnGlavd~~~~~lY~aD~~~  267 (386)
T 3v65_B          193 -RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-IIA---DTHLFWPNGLTIDYAGRRMYWVDAKH  267 (386)
T ss_dssp             -CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEE---CSSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred             -eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE-EEE---ECCCCCeeeEEEeCCCCEEEEEECCC
Confidence             11122233456789999997666655543 4 68888888654322 221   1112234556665  44 44444556


Q ss_pred             CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          363 RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       363 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      +.|..+|+.....   ...+........+|++..+      .++++-...+.|..++..++
T Consensus       268 ~~I~~~d~dG~~~---~~~~~~~~~~P~giav~~~------~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          268 HVIERANLDGSHR---KAVISQGLPHPFAITVFED------SLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             TEEEEECTTSCSC---EEEECSSCSSEEEEEEETT------EEEEEETTTTEEEEEETTTC
T ss_pred             CEEEEEeCCCCee---EEEEECCCCCceEEEEECC------EEEEeeCCCCeEEEEECCCC
Confidence            7899999875431   2222333445678887332      36777777788888874444

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.33  E-value=8.2e-05  Score=72.31  Aligned_cols=267  Identities=10%  Similarity=0.023  Sum_probs=135.1

Q ss_pred             CCEEEEEecC------------eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe-CCe-EEEEe-cCCeEEEEeCCCC
Q 013717          108 HNFLYAASSH------------EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC-DGK-IFTAH-QDCKIRVWQLTPT  172 (437)
Q Consensus       108 ~~~l~s~~~d------------~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~-l~s~~-~dg~i~iwd~~~~  172 (437)
                      ++.++.|+.+            .+.+||..++++..+..+..  .+.....++++. ++. ++.|+ .+..+.+||..+.
T Consensus       198 g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~--~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~  275 (656)
T 1k3i_A          198 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT--KHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD  275 (656)
T ss_dssp             TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC--SCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT
T ss_pred             CEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC--CCCCccccccCCCCCCEEEeCCCCCCceEEecCcCC
Confidence            6677776531            58899999987776655421  223333345555 344 66666 4568999998866


Q ss_pred             cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe-CCCeEEEEE-CC-----CcEEEEECCCcceE
Q 013717          173 KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV-NNGLIYSVS-WD-----KSLKIWRASDLRCL  245 (437)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~-~d-----g~i~iwd~~~~~~~  245 (437)
                      +.... ..++                           ..........+ +.+.++.|+ .+     ..+.+||..+.+-.
T Consensus       276 ~W~~~-~~~~---------------------------~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~  327 (656)
T 1k3i_A          276 SWIPG-PDMQ---------------------------VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  327 (656)
T ss_dssp             EEEEC-CCCS---------------------------SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             ceeEC-CCCC---------------------------ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence            43222 1111                           01112233344 347777777 34     56999999876533


Q ss_pred             EEe----ecccccEEEEEEecCCe-EEEEeCCC---------eEEEecCCCCcccceeeEEeeC------ccccEEEEEE
Q 013717          246 ESI----KAHEDAVNAVAVSAGGT-VYTGSADR---------KIRVWAKPFNEKRHALIATLEK------HKSAVNALAL  305 (437)
Q Consensus       246 ~~~----~~~~~~v~~~~~~~~~~-l~~~~~dg---------~v~iwd~~~~~~~~~~~~~~~~------~~~~i~~~~~  305 (437)
                      ..-    ......-....+..++. ++.|+.+|         .+..||...+... ........      ....-.++.|
T Consensus       328 ~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~-~~~~~~~~~~~~~~~~~~~~av~~  406 (656)
T 1k3i_A          328 SLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV-KSAGKRQSNRGVAPDAMCGNAVMY  406 (656)
T ss_dssp             EETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE-EEEEECEETTEECCCCBTCEEEEE
T ss_pred             eCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCccee-ecCCccccccccCCCCCCCceEec
Confidence            320    00000000011223444 45555444         5677777644311 11111110      0112244444


Q ss_pred             cc-CCCEEEEEeCCC-----------cEEEEECCCCccceEEeeeecccccceEEEE-eeCCEEEEEeCC----------
Q 013717          306 SD-DGTVLFSGACDR-----------SILVWDREDSANHMVVTGALRGHGKAILCLI-NVAGLLMSGSAD----------  362 (437)
Q Consensus       306 ~~-~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~l~~~~~d----------  362 (437)
                      .. ++++++.|+.++           .|.+||..+...................++. .++.+++.|+.+          
T Consensus       407 ~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~  486 (656)
T 1k3i_A          407 DAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP  486 (656)
T ss_dssp             ETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSB
T ss_pred             cCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCc
Confidence            43 677888887543           6778887764322111001111111223333 367788888754          


Q ss_pred             -CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecC
Q 013717          363 -RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSL  411 (437)
Q Consensus       363 -g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~  411 (437)
                       ..+.+||..+.+ +..+..+...........+.+++     ++++.||.
T Consensus       487 ~~~v~~ydp~t~~-W~~~~~~~~~R~~hs~a~ll~dg-----~v~v~GG~  530 (656)
T 1k3i_A          487 VFTPEIYVPEQDT-FYKQNPNSIVRVYHSISLLLPDG-----RVFNGGGG  530 (656)
T ss_dssp             CCCCEEEEGGGTE-EEECCCCSSCCCTTEEEEECTTS-----CEEEEECC
T ss_pred             ccceEEEcCCCCc-eeecCCCCCccccccHhhcCCCc-----EEEecCCC
Confidence             468999987643 44443333222223334455666     37888875

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.32  E-value=0.0013  Score=57.41  Aligned_cols=223  Identities=15%  Similarity=0.090  Sum_probs=129.3

Q ss_pred             EEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC--CeE-EEEecCCeEEEEeCCCC---cccccccccCc
Q 013717          110 FLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD--GKI-FTAHQDCKIRVWQLTPT---KHHKLKTTLPT  183 (437)
Q Consensus       110 ~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l-~s~~~dg~i~iwd~~~~---~~~~~~~~~~~  183 (437)
                      +|+.+..+.|+..|+.+.....+  +    .....+..++|++  +.| ++-...+.|..++++..   .....+     
T Consensus         3 ~ll~~~~~~I~~i~~~~~~~~~~--~----~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~-----   71 (316)
T 1ijq_A            3 YLFFTNRHEVRKMTLDRSEYTSL--I----PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-----   71 (316)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEE--E----CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-----
T ss_pred             EEEEECCCeEEEEECCCcceEeh--h----cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE-----
Confidence            45566666889999988543332  2    1345678999984  344 44455688999988752   110000     


Q ss_pred             cccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEE-ECCCcEEEEECCCcceEEEeecccccEEEEEE
Q 013717          184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSV-SWDKSLKIWRASDLRCLESIKAHEDAVNAVAV  260 (437)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  260 (437)
                                              +...-.....+++++  +.|+.+ ...+.|.++|+........+.........+++
T Consensus        72 ------------------------~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iav  127 (316)
T 1ijq_A           72 ------------------------ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVV  127 (316)
T ss_dssp             ------------------------ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEE
T ss_pred             ------------------------EeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEe
Confidence                                    001112345677763  445444 56788999998754433333333456789999


Q ss_pred             ecC-CeEEEEeC-C-CeEEEecCCCCcccceeeEEe-eCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCccceEE
Q 013717          261 SAG-GTVYTGSA-D-RKIRVWAKPFNEKRHALIATL-EKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSANHMVV  335 (437)
Q Consensus       261 ~~~-~~l~~~~~-d-g~v~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~  335 (437)
                      .|. +.++.+.. . +.|..+++....     ...+ ...-.....+++++++..|+.+. ..+.|..+|+.... ...+
T Consensus       128 dp~~g~ly~~d~~~~~~I~~~~~dG~~-----~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~  201 (316)
T 1ijq_A          128 DPVHGFMYWTDWGTPAKIKKGGLNGVD-----IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTI  201 (316)
T ss_dssp             ETTTTEEEEEECSSSCEEEEEETTSCC-----EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEE
T ss_pred             CCCCCEEEEEccCCCCeEEEEcCCCCC-----eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEE
Confidence            985 45444443 3 788888775322     1112 22345678999999777666555 46789999987532 2222


Q ss_pred             eeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCC
Q 013717          336 TGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       336 ~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~  374 (437)
                      .. ..........++..++ ++++-...+.|..++..+++
T Consensus       202 ~~-~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          202 LE-DEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             EE-CTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             ee-cCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCc
Confidence            22 1111223355555656 45555567789999876665

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.30  E-value=0.00012  Score=71.19  Aligned_cols=255  Identities=13%  Similarity=0.139  Sum_probs=126.8

Q ss_pred             eeEEecCCCc-ceeeeec--CccCCeEEEEee--CCEEEEEecC--eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe
Q 013717           79 TINFSSASHL-CINSVQL--GHKLPIGCIAVH--HNFLYAASSH--EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC  151 (437)
Q Consensus        79 ~i~~~~~~~~-~~~~~~~--~h~~~V~~l~~~--~~~l~s~~~d--~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~  151 (437)
                      .+.+|+.... ...+..+  .+.....++++.  +.+++.|+.+  .+.+||..+..|..+..+.   ..... .+++..
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~---~~R~~-~s~~~~  295 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ---VARGY-QSSATM  295 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCS---SCCSS-CEEEEC
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCC---ccccc-cceEEe
Confidence            4566766432 2333333  233333345543  8888888854  8999999998888776542   11222 233444


Q ss_pred             -CCe-EEEEe-cC-----CeEEEEeCCCCcccccc----cccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEE
Q 013717          152 -DGK-IFTAH-QD-----CKIRVWQLTPTKHHKLK----TTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA  219 (437)
Q Consensus       152 -~~~-l~s~~-~d-----g~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  219 (437)
                       ++. ++.|+ .+     ..+.+||..+.+.....    ..+......  ...                 .+...+..+.
T Consensus       296 ~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~--~~~-----------------~~~~~iyv~G  356 (656)
T 1k3i_A          296 SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ--GLY-----------------RSDNHAWLFG  356 (656)
T ss_dssp             TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT--GGG-----------------TTTCSCCEEE
T ss_pred             cCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc--cee-----------------ecCCceEEEE
Confidence             455 66666 34     56899999876532221    000000000  000                 0111111111


Q ss_pred             eCCCeEEEEECCCcEEEEECCCcceEEEeeccc---------ccEEEEEEec-CCe-EEEEeCCC-----------eEEE
Q 013717          220 VNNGLIYSVSWDKSLKIWRASDLRCLESIKAHE---------DAVNAVAVSA-GGT-VYTGSADR-----------KIRV  277 (437)
Q Consensus       220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~~~-~~~-l~~~~~dg-----------~v~i  277 (437)
                      .....++..+....+..||..+...........         ..-.++.+.. +++ ++.|+.++           .|.+
T Consensus       357 g~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~  436 (656)
T 1k3i_A          357 WKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITL  436 (656)
T ss_dssp             CGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEEC
T ss_pred             CCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEc
Confidence            111111112233467888988766443332111         1234444443 667 77777532           6778


Q ss_pred             ecCCCCcccceeeE--EeeCccccEEEEEEccCCCEEEEEeCC-----------CcEEEEECCCCccceEEeeeeccccc
Q 013717          278 WAKPFNEKRHALIA--TLEKHKSAVNALALSDDGTVLFSGACD-----------RSILVWDREDSANHMVVTGALRGHGK  344 (437)
Q Consensus       278 wd~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~  344 (437)
                      ||...+.  +..+.  .+. ....-.+++..|+|++++.|+.+           ..+.+||..+.+  +...........
T Consensus       437 yd~~~~~--W~~~~~~~mp-~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~--W~~~~~~~~~R~  511 (656)
T 1k3i_A          437 GEPGTSP--NTVFASNGLY-FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT--FYKQNPNSIVRV  511 (656)
T ss_dssp             CSTTSCC--EEEECTTCCS-SCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE--EEECCCCSSCCC
T ss_pred             CCCCCCC--eeEEccCCCC-CCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc--eeecCCCCCccc
Confidence            8775432  22221  111 11122345667899999998864           468999987643  222221111111


Q ss_pred             c--eEEEEeeCCEEEEEeC
Q 013717          345 A--ILCLINVAGLLMSGSA  361 (437)
Q Consensus       345 ~--i~~~~~~~~~l~~~~~  361 (437)
                      .  ...+..++.+++.|+.
T Consensus       512 ~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          512 YHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             TTEEEEECTTSCEEEEECC
T ss_pred             cccHhhcCCCcEEEecCCC
Confidence            1  1222346778888875

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.29  E-value=0.00082  Score=58.36  Aligned_cols=234  Identities=9%  Similarity=0.112  Sum_probs=122.1

Q ss_pred             EEEEEec--C-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecC----CeEEEEeCCCCccccccccc
Q 013717          110 FLYAASS--H-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQD----CKIRVWQLTPTKHHKLKTTL  181 (437)
Q Consensus       110 ~l~s~~~--d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~d----g~i~iwd~~~~~~~~~~~~~  181 (437)
                      +++.|+.  . .+.+||..++++..+..+...   ... .+++..++. ++.|+.+    ..+.+||..+.+-... ..+
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~---r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~-~~~   88 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEK---RRD-AACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSK-LGP   88 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCC---CBS-CEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEE-ECC
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcc---cce-eEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEEC-CCC
Confidence            4444543  2 899999999888877665321   112 222334555 6666654    5688888877653222 111


Q ss_pred             CccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECC------CcEEEEECCCcceEEE--eecccc
Q 013717          182 PTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWD------KSLKIWRASDLRCLES--IKAHED  253 (437)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~--~~~~~~  253 (437)
                      +.                           .......+.+...+++.|+.+      ..+.+||..+.+-...  +.....
T Consensus        89 p~---------------------------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~  141 (306)
T 3ii7_A           89 PT---------------------------PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRC  141 (306)
T ss_dssp             SS---------------------------CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred             Cc---------------------------cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcc
Confidence            10                           111122333444666677654      4588999887653322  111111


Q ss_pred             cEEEEEEecCCe-EEEEeC---------CCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC-----
Q 013717          254 AVNAVAVSAGGT-VYTGSA---------DRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD-----  318 (437)
Q Consensus       254 ~v~~~~~~~~~~-l~~~~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----  318 (437)
                      ...++ . -+++ ++.|+.         -..+.+||+.++  .+..+..+......-..+.+  ++++++.|+.+     
T Consensus       142 ~~~~~-~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~  215 (306)
T 3ii7_A          142 SHGMV-E-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGL  215 (306)
T ss_dssp             SCEEE-E-ETTEEEEECCEESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEB
T ss_pred             eeEEE-E-ECCEEEEECCCCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCC
Confidence            11222 2 2566 555553         345788887654  33333222211111222222  56677777654     


Q ss_pred             CcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCC-----CcEEEeeCCCCCCeeeeeeecC
Q 013717          319 RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSAD-----RTVRIWQRGSDGRFGCLAVLEG  384 (437)
Q Consensus       319 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~  384 (437)
                      ..+.+||+.+.+  +..............++...+.+++.|+.+     ..+.+||..+.+ +..+..+..
T Consensus       216 ~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~~  283 (306)
T 3ii7_A          216 DNVEYYDIKLNE--WKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDK-WVANSKVRA  283 (306)
T ss_dssp             CCEEEEETTTTE--EEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTE-EEEEEEEEC
T ss_pred             ceEEEeeCCCCc--EEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCe-EEeCCCccc
Confidence            468899987653  222222222222233444455577777754     468889988654 555554443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.27  E-value=0.0019  Score=57.19  Aligned_cols=194  Identities=11%  Similarity=0.007  Sum_probs=115.7

Q ss_pred             CcEEEEEeCC--CeEEEEE-CCCcEEEEECCCcceEEEeecccccEEEEEEecC-Ce-EEEEeCCCeEEEecCCCCcccc
Q 013717          213 DAVTGLAVNN--GLIYSVS-WDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAG-GT-VYTGSADRKIRVWAKPFNEKRH  287 (437)
Q Consensus       213 ~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~-l~~~~~dg~v~iwd~~~~~~~~  287 (437)
                      ..+..++|++  +.|+... ..+.|..+++........+.........+++.+. +. +++-...+.|.++++....   
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~---  149 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH---  149 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc---
Confidence            3577888885  5555554 5688999998766544433333345678888874 45 4555667899999876432   


Q ss_pred             eeeEEeeCccccEEEEEEccCCCEEEEEe-CC-CcEEEEECCCCccceEEeeeecccccceEEEEee--CCEE-EEEeCC
Q 013717          288 ALIATLEKHKSAVNALALSDDGTVLFSGA-CD-RSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLL-MSGSAD  362 (437)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~d  362 (437)
                       ....+.........++++|.+..|+... .+ +.|..+++..... ..+.   .........++++  +..| ++-...
T Consensus       150 -~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~---~~~~~~PnGla~d~~~~~lY~aD~~~  224 (349)
T 3v64_C          150 -RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIA---DTHLFWPNGLTIDYAGRRMYWVDAKH  224 (349)
T ss_dssp             -CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EESC---CSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             -eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-EEEE---ECCCCCcceEEEeCCCCEEEEEECCC
Confidence             1112223345678999999665555444 44 7898888865322 1111   1122334566665  3444 444556


Q ss_pred             CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          363 RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       363 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      +.|..+|+.....   ...+........+|++.. +     .++++-...+.|...+-.++
T Consensus       225 ~~I~~~~~dG~~~---~~~~~~~~~~P~giav~~-~-----~ly~td~~~~~V~~~~~~~G  276 (349)
T 3v64_C          225 HVIERANLDGSHR---KAVISQGLPHPFAITVFE-D-----SLYWTDWHTKSINSANKFTG  276 (349)
T ss_dssp             TEEEEEETTSCSC---EEEECSSCSSEEEEEEET-T-----EEEEEETTTTEEEEEETTTC
T ss_pred             CEEEEEeCCCCce---EEEEeCCCCCceEEEEEC-C-----EEEEecCCCCeEEEEEccCC
Confidence            7899999875432   222223344567788733 2     26666667778887774333

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.24  E-value=0.0021  Score=56.34  Aligned_cols=231  Identities=9%  Similarity=0.028  Sum_probs=121.9

Q ss_pred             cccEEEEEEeCC-eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe
Q 013717          142 SGSVKSVTFCDG-KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV  220 (437)
Q Consensus       142 ~~~v~~l~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  220 (437)
                      ...+.+|.|.++ .++.++.+|.| +...+.++.........                          ......+.++.+
T Consensus        35 ~~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~--------------------------~~~~~~~~~i~~   87 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVL--------------------------DHSDYRFNSVSF   87 (327)
T ss_dssp             SSCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCC--------------------------SCCCCEEEEEEE
T ss_pred             CCcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCC--------------------------CCCCccEEEEEe
Confidence            457999999744 44446677765 33344444322221100                          012346778888


Q ss_pred             CCCeEEEEECCCcEEEEECCCcceEEEee---cccccEEEEEEecCCeEEEEeCCCeE-EEecCCCCcccceeeEEeeCc
Q 013717          221 NNGLIYSVSWDKSLKIWRASDLRCLESIK---AHEDAVNAVAVSAGGTVYTGSADRKI-RVWAKPFNEKRHALIATLEKH  296 (437)
Q Consensus       221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~l~~~~~dg~v-~iwd~~~~~~~~~~~~~~~~~  296 (437)
                      .++.++.++.+|.|.. ....++.-....   .....+..+.+.+++.++.++.+|.| +-.|   ....++.+.  ...
T Consensus        88 ~~~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~D---gG~tW~~~~--~~~  161 (327)
T 2xbg_A           88 QGNEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKD---SGKNWQALV--QEA  161 (327)
T ss_dssp             ETTEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESS---TTSSEEEEE--CSC
T ss_pred             cCCeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcC---CCCCCEEee--cCC
Confidence            7755556666775544 223333322222   12345778888777885555556654 3333   333444332  234


Q ss_pred             cccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCC
Q 013717          297 KSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGR  375 (437)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~  375 (437)
                      ...+..+++.+++.+++++. +|.++.-+-..+. ......  ......+..+.+.++ .++.++.+|.+++.+...++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~-tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~t  237 (327)
T 2xbg_A          162 IGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQT-AWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSEN  237 (327)
T ss_dssp             CCCEEEEEECTTSCEEEEET-TSSEEEEECTTCS-SCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEE
T ss_pred             CcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCC-ceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCe
Confidence            56788999999988877664 4555443211122 222221  223445566666543 455666788887764332332


Q ss_pred             eeeeeee-cCCCCCeeEEEEEccCCCCceEEEEEecCCCcE
Q 013717          376 FGCLAVL-EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEI  415 (437)
Q Consensus       376 ~~~~~~~-~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  415 (437)
                      +..+..- ..+...+.++++.+++.      ++.++.+|.|
T Consensus       238 W~~~~~~~~~~~~~~~~v~~~~~~~------~~~~g~~g~i  272 (327)
T 2xbg_A          238 WGELLSPLRRNSVGFLDLAYRTPNE------VWLAGGAGAL  272 (327)
T ss_dssp             ECCCBCTTSSCCSCEEEEEESSSSC------EEEEESTTCE
T ss_pred             eEeccCCcccCCcceEEEEecCCCE------EEEEeCCCeE
Confidence            3222211 11234588898887542      4444557776

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.23  E-value=0.0027  Score=57.35  Aligned_cols=247  Identities=13%  Similarity=0.075  Sum_probs=142.2

Q ss_pred             CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC--CeEE-EEecCCeEEEEeCCCCcccccccccCcc
Q 013717          108 HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD--GKIF-TAHQDCKIRVWQLTPTKHHKLKTTLPTV  184 (437)
Q Consensus       108 ~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~  184 (437)
                      ..+|+.+....|+..++.......+.      .....+..|+|++  +.|+ +-...+.|+.++++.........     
T Consensus        83 ~~~ll~~~~~~I~~i~l~~~~~~~~~------~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~-----  151 (400)
T 3p5b_L           83 IAYLFFTNRHEVRKMTLDRSEYTSLI------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD-----  151 (400)
T ss_dssp             SCEEEEEETTEEEEECTTSCSCEEEE------CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCE-----
T ss_pred             cceeEEeccceeEEEccCCcceeEec------cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcce-----
Confidence            45666666668999999875433332      2456788999984  3444 44456888888886532100000     


Q ss_pred             ccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEE-ECCCcEEEEECCCcceEEEeecccccEEEEEEe
Q 013717          185 NDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSV-SWDKSLKIWRASDLRCLESIKAHEDAVNAVAVS  261 (437)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  261 (437)
                                           .+..........++++.  +.|+.+ ...+.|.+.++........+.........|++.
T Consensus       152 ---------------------~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavd  210 (400)
T 3p5b_L          152 ---------------------TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVD  210 (400)
T ss_dssp             ---------------------EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEE
T ss_pred             ---------------------EEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEe
Confidence                                 00111234566777765  444444 457889999987655444444344567899999


Q ss_pred             cC-CeEEEEe-C-CCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCccceEEee
Q 013717          262 AG-GTVYTGS-A-DRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSANHMVVTG  337 (437)
Q Consensus       262 ~~-~~l~~~~-~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~  337 (437)
                      |. +.|+... . .+.|...++.....    .......-.....|++++++..|+.+. ..+.|..+|+..... ..+..
T Consensus       211 p~~g~ly~td~~~~~~I~~~~~dG~~~----~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~  285 (400)
T 3p5b_L          211 PVHGFMYWTDWGTPAKIKKGGLNGVDI----YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILE  285 (400)
T ss_dssp             TTTTEEEEEECSSSCCEEEEETTSCSC----EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEE
T ss_pred             cccCeEEEEeCCCCCEEEEEeCCCCcc----EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEe
Confidence            85 4554443 2 47888888764321    111222335688999998777776664 467899999875432 22222


Q ss_pred             eecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEE
Q 013717          338 ALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAV  395 (437)
Q Consensus       338 ~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~  395 (437)
                       ..........++..++ ++++-...+.|..+|..+++.   +..+........+|...
T Consensus       286 -~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~---~~~i~~~~~~p~~i~v~  340 (400)
T 3p5b_L          286 -DEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSD---VNLLAENLLSPEDMVLF  340 (400)
T ss_dssp             -CSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCC---CEEEECSCSCEEEEEEE
T ss_pred             -CCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCc---eEEEecCCCCCceEEEE
Confidence             1112233456666666 555666678899999766662   33333333334455443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.22  E-value=0.0022  Score=55.84  Aligned_cols=224  Identities=13%  Similarity=0.075  Sum_probs=129.8

Q ss_pred             EEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC--Ce-EEEEecCCeEEEEeCCCCcccccccccCcccc
Q 013717          110 FLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD--GK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVND  186 (437)
Q Consensus       110 ~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  186 (437)
                      +|+.+....|+..+++.........+    .....+.++.|.+  +. +++-...+.|..++.+.........       
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~~~~~~----~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~-------   74 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKENATIVV----GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV-------   74 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSCCEEEE----EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEE-------
T ss_pred             EEEEEccCeEEEEECCCCceEEEEEe----cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEE-------
Confidence            44444444889999987531111111    1234567888884  34 4455567888888887653111000       


Q ss_pred             ceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEE-EEECCCcEEEEECCCcceEEEeecccccEEEEEEecC
Q 013717          187 RLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIY-SVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAG  263 (437)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  263 (437)
                                            ...-.....+++++  +.|+ +-...+.|.++++........+.........+++.|.
T Consensus        75 ----------------------~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~  132 (318)
T 3sov_A           75 ----------------------VSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS  132 (318)
T ss_dssp             ----------------------EECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGG
T ss_pred             ----------------------cCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCC
Confidence                                  01122345666664  4444 4445678999998654333333334456789999985


Q ss_pred             -CeEEEEe--CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCccceEEeeee
Q 013717          264 -GTVYTGS--ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSANHMVVTGAL  339 (437)
Q Consensus       264 -~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~  339 (437)
                       +.|+...  ..+.|..++++....  .  ......-.....|++++++..|+.+. ..+.|..+|+.... ...+..  
T Consensus       133 ~g~ly~td~~~~~~I~r~~~dG~~~--~--~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~--  205 (318)
T 3sov_A          133 SGFMYWTDWGEVPKIERAGMDGSSR--F--IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVK--  205 (318)
T ss_dssp             GTEEEEEECSSSCEEEEEETTSCSC--E--EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC--
T ss_pred             CCEEEEEecCCCCEEEEEEcCCCCe--E--EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEec--
Confidence             5555444  357888887753221  1  11122334678999999766666554 46789999987533 222221  


Q ss_pred             cccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCC
Q 013717          340 RGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       340 ~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~  374 (437)
                       +.......++..++ ++++-...+.|..++..+++
T Consensus       206 -~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          206 -GSLPHPFALTLFEDILYWTDWSTHSILACNKYTGE  240 (318)
T ss_dssp             -SCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             -CCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCC
Confidence             12333455666666 55555567889999987766

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.21  E-value=0.0078  Score=61.89  Aligned_cols=73  Identities=10%  Similarity=0.044  Sum_probs=50.5

Q ss_pred             ccCCeEEEEeeCCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC--------CeEEEEec-CCeEEEE
Q 013717           97 HKLPIGCIAVHHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD--------GKIFTAHQ-DCKIRVW  167 (437)
Q Consensus        97 h~~~V~~l~~~~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--------~~l~s~~~-dg~i~iw  167 (437)
                      ....|.+.+.++.+++.++.+.+.+++++.+........    .-...|.|+++.+        +.++.|.. |++|+|+
T Consensus       512 ~~~~I~~As~n~~~vvva~g~~l~~fel~~~~L~~~~~~----~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~  587 (1158)
T 3ei3_A          512 QAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHT----EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARIL  587 (1158)
T ss_dssp             TCCCCCEEEECSSEEEEEETTEEEEEEEETTEEEEEEEE----ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEEeCCCEEEEEECCEEEEEEeeCCceeeeccc----CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEE
Confidence            345677777777777777644888888876544443332    2356799999873        23777886 9999999


Q ss_pred             eCCCCc
Q 013717          168 QLTPTK  173 (437)
Q Consensus       168 d~~~~~  173 (437)
                      ++.+.+
T Consensus       588 sL~~l~  593 (1158)
T 3ei3_A          588 KLPSFE  593 (1158)
T ss_dssp             ETTTCC
T ss_pred             ECCCCC
Confidence            998644

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.21  E-value=0.0024  Score=55.68  Aligned_cols=197  Identities=11%  Similarity=0.001  Sum_probs=114.4

Q ss_pred             CcEEEEEeCC--CeEEEEE-CCCcEEEEECCC----cceEEEeecccccEEEEEEec-CCeE-EEEeCCCeEEEecCCCC
Q 013717          213 DAVTGLAVNN--GLIYSVS-WDKSLKIWRASD----LRCLESIKAHEDAVNAVAVSA-GGTV-YTGSADRKIRVWAKPFN  283 (437)
Q Consensus       213 ~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~-~~~l-~~~~~dg~v~iwd~~~~  283 (437)
                      ....+++|++  +.|+.+. .++.|..+++..    ......+...-.....+++.+ .+.| ++-...+.|.++++...
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            4567888876  5555554 568899999875    222222222224567889886 4454 55567889999987632


Q ss_pred             cccceeeEEeeCccccEEEEEEccCCCEEEEEeCC--CcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEE-E
Q 013717          284 EKRHALIATLEKHKSAVNALALSDDGTVLFSGACD--RSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLM-S  358 (437)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~-~  358 (437)
                      .    ..............++++|.+..|+.+...  +.|..+++.... ...+.   ...-.....++++  +..|+ +
T Consensus       110 ~----~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~---~~~~~~P~gla~d~~~~~lY~~  181 (316)
T 1ijq_A          110 K----RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLV---TENIQWPNGITLDLLSGRLYWV  181 (316)
T ss_dssp             S----EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEE---CSSCSCEEEEEEETTTTEEEEE
T ss_pred             c----eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEE---ECCCCCceEEEEeccCCEEEEE
Confidence            2    111222234567899999966666555443  688888886432 22221   1122344566666  44444 4


Q ss_pred             EeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          359 GSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       359 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      -...+.|..+|+..... ..+...........+|++.. +     .++++-...+.|..++..+++
T Consensus       182 D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~~-~-----~ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          182 DSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE-D-----KVFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             ETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEET-T-----EEEEEETTTTEEEEEETTTCC
T ss_pred             ECCCCeEEEEecCCCce-EEEeecCCccCCcEEEEEEC-C-----EEEEEECCCCeEEEEeCCCCc
Confidence            45567899999975332 22222222233456777753 2     367777777888888865554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.17  E-value=0.0014  Score=59.94  Aligned_cols=234  Identities=10%  Similarity=0.088  Sum_probs=128.2

Q ss_pred             ccEEEEEEeC--Ce-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEE
Q 013717          143 GSVKSVTFCD--GK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA  219 (437)
Q Consensus       143 ~~v~~l~~~~--~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  219 (437)
                      .....|++++  +. |+.+...+.|+.+|++.+......                               ........++
T Consensus       137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-------------------------------~~~~~P~~ia  185 (430)
T 3tc9_A          137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-------------------------------SGLSKVRTIC  185 (430)
T ss_dssp             SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-------------------------------CCCSCEEEEE
T ss_pred             CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-------------------------------cCCCCcceEE
Confidence            3567888886  23 666666588888888765432211                               1334577888


Q ss_pred             eCC--CeEEEEECC-C----cEEEEECCCcceE--EEeecccccEEEEEEec-CCeEE-EEeCCCeEEEecCCCCcccce
Q 013717          220 VNN--GLIYSVSWD-K----SLKIWRASDLRCL--ESIKAHEDAVNAVAVSA-GGTVY-TGSADRKIRVWAKPFNEKRHA  288 (437)
Q Consensus       220 ~~~--~~l~~~~~d-g----~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~-~~~l~-~~~~dg~v~iwd~~~~~~~~~  288 (437)
                      +++  +.|+.+... +    .+..++. .+...  ..+. .......++++| ++.|+ +-..++.|..++......  .
T Consensus       186 ~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~--~  261 (430)
T 3tc9_A          186 WTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET--T  261 (430)
T ss_dssp             ECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE--E
T ss_pred             EeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE--E
Confidence            887  546665542 2    2333443 33222  2232 233456788999 67754 445678999998764321  1


Q ss_pred             eeEEeeCccccEEEEEEccCCCEEEE-EeCCCcEEEEECCCCcc----ceEEeeee--ccc---------ccceE-EEEe
Q 013717          289 LIATLEKHKSAVNALALSDDGTVLFS-GACDRSILVWDREDSAN----HMVVTGAL--RGH---------GKAIL-CLIN  351 (437)
Q Consensus       289 ~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~----~~~~~~~~--~~~---------~~~i~-~~~~  351 (437)
                      .+... ........++|+|+|++|+. -...+.|..++......    ...+....  .+.         -.... .+..
T Consensus       262 ~~~~~-~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v  340 (430)
T 3tc9_A          262 PLFTI-QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFV  340 (430)
T ss_dssp             EEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEE
T ss_pred             EEEEc-CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEE
Confidence            11111 12245789999999995544 45678899988753211    11121110  000         00111 2332


Q ss_pred             e----------CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCC------------------CCCeeEEEEEccCCCCce
Q 013717          352 V----------AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGH------------------TKPVKSLTAVTEEGQNGV  403 (437)
Q Consensus       352 ~----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h------------------~~~v~~l~~~~~~~~~~~  403 (437)
                      .          +.++++=...+.|+.++.. +.    +.++.+.                  -..-..|++.++++    
T Consensus       341 ~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~-G~----v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g----  411 (430)
T 3tc9_A          341 KNPAYKGSSDEYDFYFCDRENHCIRILTPQ-GR----VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERE----  411 (430)
T ss_dssp             ECGGGTTSSCCEEEEEEEGGGTEEEEECTT-SE----EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTT----
T ss_pred             ccccccccCCCCeEEEEECCCcEEEEECCC-Cc----EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCC----
Confidence            1          2344444556778888733 22    2222111                  12578999998533    


Q ss_pred             EEEEEecCCCcEEEEeec
Q 013717          404 VSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       404 ~~l~s~~~dg~i~iw~~~  421 (437)
                      .++++-..+..|+.++++
T Consensus       412 ~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          412 CFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEEEEEGGGTEEEEEEEC
T ss_pred             EEEEEECCCCeEEEEccC
Confidence            366666667888888765

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.16  E-value=0.01  Score=61.01  Aligned_cols=176  Identities=12%  Similarity=0.147  Sum_probs=109.1

Q ss_pred             cEEEEECCCcceEEEee-cccccEEEEEE---ecCC-e-EEEEe----------CCCeEEEecCCCCcccceeeEEeeCc
Q 013717          233 SLKIWRASDLRCLESIK-AHEDAVNAVAV---SAGG-T-VYTGS----------ADRKIRVWAKPFNEKRHALIATLEKH  296 (437)
Q Consensus       233 ~i~iwd~~~~~~~~~~~-~~~~~v~~~~~---~~~~-~-l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~  296 (437)
                      .|++.|..+.+.+..+. .....+.+++.   ..+. . +++|+          ..|.|.+|++..  ...+.+.... .
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~--~kL~lv~~~~-v  884 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD--GKLQTVAEKE-V  884 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET--TEEEEEEEEE-E
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC--CEEEEEEEEE-c
Confidence            46777777777666554 23344555553   2222 2 77776          358899998862  2333333332 4


Q ss_pred             cccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCe
Q 013717          297 KSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRF  376 (437)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  376 (437)
                      ++++++++-. +| +|++|- ..+|++|++...+... .......+ ..+..+...+++++.|..-..|.++..+...  
T Consensus       885 ~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~-~~~~~~~~-i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~--  957 (1158)
T 3ei3_A          885 KGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELR-TECNHYNN-IMALYLKTKGDFILVGDLMRSVLLLAYKPME--  957 (1158)
T ss_dssp             SSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEE-EEEEECCC-SCEEEEEEETTEEEEEESSBCEEEEEEETTT--
T ss_pred             CCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEE-EEeecccc-EEEEEEeccCCEEEEEEhhheEEEEEEEcCC--
Confidence            6788888855 45 455443 4789999997654222 21111111 1234666778999999988888876654322  


Q ss_pred             eeeeee--cCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          377 GCLAVL--EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       377 ~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      ..+..+  .-+...++++.+..++      .++.+..+|.|.+.+.....
T Consensus       958 ~~L~~~a~D~~~~~vta~~~ld~~------t~l~aD~~gNl~vl~~~~~~ 1001 (1158)
T 3ei3_A          958 GNFEEIARDFNPNWMSAVEILDDD------NFLGAENAFNLFVCQKDSAA 1001 (1158)
T ss_dssp             TEEEEEEECCSCBCEEEEEEEETT------EEEEEETTSEEEEEEECTTC
T ss_pred             CeEEEEEeecccccEEEEEEEccC------cEEEEcCCCcEEEEecCCCC
Confidence            122222  2345678999998765      68889999999999887643

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.15  E-value=0.0014  Score=56.64  Aligned_cols=222  Identities=9%  Similarity=0.151  Sum_probs=113.7

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecC-----CeEEEEeCCCCcc--cccccccCcccccee
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQD-----CKIRVWQLTPTKH--HKLKTTLPTVNDRLL  189 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~d-----g~i~iwd~~~~~~--~~~~~~~~~~~~~~~  189 (437)
                      .+.+||..+.++..+..+..   .... .+++..++. ++.|+.+     ..+.+||..+.+.  ...+..++.      
T Consensus        32 ~~~~~d~~~~~W~~~~~~p~---~r~~-~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~------  101 (301)
T 2vpj_A           32 VVEKYDPKTQEWSFLPSITR---KRRY-VASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNV------  101 (301)
T ss_dssp             CEEEEETTTTEEEECCCCSS---CCBS-CEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSS------
T ss_pred             EEEEEcCCCCeEEeCCCCCh---hhcc-ccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCC------
Confidence            78999999988877765422   1111 223334555 6666654     4588888877651  111111110      


Q ss_pred             eecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECC-----CcEEEEECCCcceEE--EeecccccEEEEEEec
Q 013717          190 RFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWD-----KSLKIWRASDLRCLE--SIKAHEDAVNAVAVSA  262 (437)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~  262 (437)
                                           .......+.+....++.|+.+     ..+.+||..+.+-..  .+........++.  -
T Consensus       102 ---------------------~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~  158 (301)
T 2vpj_A          102 ---------------------RRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--A  158 (301)
T ss_dssp             ---------------------CCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--E
T ss_pred             ---------------------CccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--E
Confidence                                 111112233344566666543     358899987765332  2221111122222  2


Q ss_pred             CCe-EEEEeCC-----CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC-----CcEEEEECCCCcc
Q 013717          263 GGT-VYTGSAD-----RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD-----RSILVWDREDSAN  331 (437)
Q Consensus       263 ~~~-l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~  331 (437)
                      +++ ++.|+.+     ..+.+||+.++  .+..+..+.........+.+  ++++++.|+.+     ..+.+||+.+.+-
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  234 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSW  234 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence            666 6666654     45888887543  33333222211112222222  56777777664     4689999987542


Q ss_pred             ceEEeeeecccccceEEEEeeCCEEEEEeCC-----CcEEEeeCCCCCCeeee
Q 013717          332 HMVVTGALRGHGKAILCLINVAGLLMSGSAD-----RTVRIWQRGSDGRFGCL  379 (437)
Q Consensus       332 ~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~  379 (437)
                        ..............++...+.+++.|+.+     ..+.+||.++.+ +..+
T Consensus       235 --~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~  284 (301)
T 2vpj_A          235 --TTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS-WEVV  284 (301)
T ss_dssp             --EEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE-EEEE
T ss_pred             --EECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe-EEEc
Confidence              22222222222223444455577777765     357788887643 4433

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.12  E-value=0.00049  Score=67.91  Aligned_cols=193  Identities=13%  Similarity=0.121  Sum_probs=109.0

Q ss_pred             cEEEEEeC-C--CeEEEEE-CCC----cEEEEECCCc-ceEEE-eecccccEEEEEEecCCe-EEEEeCC-----CeEEE
Q 013717          214 AVTGLAVN-N--GLIYSVS-WDK----SLKIWRASDL-RCLES-IKAHEDAVNAVAVSAGGT-VYTGSAD-----RKIRV  277 (437)
Q Consensus       214 ~v~~~~~~-~--~~l~~~~-~dg----~i~iwd~~~~-~~~~~-~~~~~~~v~~~~~~~~~~-l~~~~~d-----g~v~i  277 (437)
                      .+....|+ |  ++|+.+. .+|    .|+++|+.++ +.+.. +.   .....++|+||++ |+....+     ..|.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57788999 7  5566443 333    4999999998 63211 11   1234688999997 6666654     35777


Q ss_pred             ecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC---CCcEEEEECCCCccce--EEeeeecccccceEEEE-e
Q 013717          278 WAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC---DRSILVWDREDSANHM--VVTGALRGHGKAILCLI-N  351 (437)
Q Consensus       278 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~--~~~~~~~~~~~~i~~~~-~  351 (437)
                      +++.+.......+... ........+.|+|||++|+....   ...|+++|+.++....  ...  ..........+. .
T Consensus       252 ~~lgt~~~~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l--~~~~~~~~~s~~~~  328 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV--RPREKGVRYDVQMH  328 (751)
T ss_dssp             EETTSCGGGCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES--SCCCTTCCEEEEEE
T ss_pred             EECCCCchhcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe--ecCCCCceEEEeee
Confidence            8776543222222221 22334668899999998887653   4568889998753222  111  122334445555 3


Q ss_pred             eCCEEE-EEeCC--C--cEEEeeCCCCCCeeeeee-ecCCCC--CeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          352 VAGLLM-SGSAD--R--TVRIWQRGSDGRFGCLAV-LEGHTK--PVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       352 ~~~~l~-~~~~d--g--~i~iwd~~~~~~~~~~~~-~~~h~~--~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      .++.|+ ....+  +  .|..+++.+...   ... +..|..  .+..+.+.  ++    .++++...||..++|-++
T Consensus       329 ~g~~l~~~t~~~~a~~~~L~~~d~~~~~~---~~~~li~~~~~~~l~~~~~~--~~----~lv~~~~~~g~~~l~~~d  397 (751)
T 2xe4_A          329 GTSHLVILTNEGGAVNHKLLIAPRGQPSD---WSHVLVDHSEDVFMESIAVR--SN----YLVVAGRRAGLTRIWTMM  397 (751)
T ss_dssp             TTTEEEEEECTTTCTTCEEEEEETTSTTC---CCCEEECCCSSEEEEEEEEC--SS----EEEEEEEETTEEEEEEEE
T ss_pred             eCCEEEEEeCCCCCCCcEEEEEcCCCccc---ceeeEECCCCCcEEEEEEEE--CC----EEEEEEEeCCEEEEEEEe
Confidence            355444 44333  2  566667654221   122 223333  34455443  33    478888888876665443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.07  E-value=0.0035  Score=52.28  Aligned_cols=200  Identities=11%  Similarity=0.079  Sum_probs=123.0

Q ss_pred             ecCCCcEEEEEeCC--C-eEEEEECCCcEEEEECCCcceEEEeec-ccccEEEEEEecCCeE-EEEeCCCeEEEecCCCC
Q 013717          209 IEHGDAVTGLAVNN--G-LIYSVSWDKSLKIWRASDLRCLESIKA-HEDAVNAVAVSAGGTV-YTGSADRKIRVWAKPFN  283 (437)
Q Consensus       209 ~~~~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~l-~~~~~dg~v~iwd~~~~  283 (437)
                      .+-...+..+++++  + ++++...++.|...|.. ++.+..+.- .......|++.+++.+ ++.-.++.+.++++...
T Consensus        23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~  101 (255)
T 3qqz_A           23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPN  101 (255)
T ss_dssp             TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred             CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence            34556799999997  4 55557788999999997 888887752 2356888999888885 44446788999987654


Q ss_pred             cccceeeEEee------CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCC--ccceEEeee--e--cccccceEEEEe
Q 013717          284 EKRHALIATLE------KHKSAVNALALSDDGTVLFSGACDRSILVWDREDS--ANHMVVTGA--L--RGHGKAILCLIN  351 (437)
Q Consensus       284 ~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~--~--~~~~~~i~~~~~  351 (437)
                      .. ...+....      ..+.....++++|+++.|+++.+.....+|.+...  .........  +  ..+.....++++
T Consensus       102 ~~-i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~  180 (255)
T 3qqz_A          102 SE-VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEF  180 (255)
T ss_dssp             CC-EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEE
T ss_pred             Ce-eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEE
Confidence            42 11112221      23445689999999987777776655566655410  011111110  0  012234566777


Q ss_pred             eCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeec-CC------CCCeeEEEEEccCCCCceEEEEEecCCCcEEEE
Q 013717          352 VAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLE-GH------TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAW  418 (437)
Q Consensus       352 ~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~h------~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  418 (437)
                      ++.   +++.......+.++|... + ......+. +.      ...-..|+|.+++.      |+..++-+.++.+
T Consensus       181 dp~tg~lliLS~~s~~L~~~d~~g-~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~------lyIvsE~n~~y~f  249 (255)
T 3qqz_A          181 NQQKNTLLVLSHESRALQEVTLVG-E-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN------IYIVSEPNRFYRF  249 (255)
T ss_dssp             ETTTTEEEEEETTTTEEEEECTTC-C-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC------EEEEETTTEEEEE
T ss_pred             cCCCCeEEEEECCCCeEEEEcCCC-C-EEEEEEcCCccCCcccccCCCCeeEECCCCC------EEEEcCCceEEEE
Confidence            755   677777788899999774 3 22333333 21      12568999999884      3334555544444

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.03  E-value=0.007  Score=54.66  Aligned_cols=199  Identities=11%  Similarity=-0.029  Sum_probs=118.0

Q ss_pred             CCCcEEEEEeCC--CeEEEEE-CCCcEEEEECCCc----ceEEEeecccccEEEEEEec-CCe-EEEEeCCCeEEEecCC
Q 013717          211 HGDAVTGLAVNN--GLIYSVS-WDKSLKIWRASDL----RCLESIKAHEDAVNAVAVSA-GGT-VYTGSADRKIRVWAKP  281 (437)
Q Consensus       211 ~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~dg~v~iwd~~  281 (437)
                      ....+..++|++  +.|+... ..+.|+.+++...    .....+.........+++.+ .+. +++-...+.|.+.+++
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            345678899986  5565554 5678888888652    22233333445678899987 455 5555667899999876


Q ss_pred             CCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC--CCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEE
Q 013717          282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC--DRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLM  357 (437)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~  357 (437)
                      ...    ....+.........|++.|.+.+|+....  .+.|...++...... .+.   ...-.....++++  +..|+
T Consensus       190 g~~----~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~-~~~---~~~l~~P~glavd~~~~~lY  261 (400)
T 3p5b_L          190 GVK----RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLV---TENIQWPNGITLDLLSGRLY  261 (400)
T ss_dssp             TCS----EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE-EEE---CSSCSCEEEEEEETTTTEEE
T ss_pred             CCc----eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE-EEE---ECCCCceEEEEEEeCCCEEE
Confidence            432    12222333456889999997666665543  478999998754322 221   1122344566666  44444


Q ss_pred             EE-eCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          358 SG-SADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       358 ~~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      .+ ...+.|..+|+...... .+....+......+|+...+      .++++-...+.|..++..+++
T Consensus       262 ~aD~~~~~I~~~d~dG~~~~-~~~~~~~~l~~P~gl~v~~~------~lywtd~~~~~V~~~~~~~G~  322 (400)
T 3p5b_L          262 WVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSLAVFED------KVFWTDIINEAIFSANRLTGS  322 (400)
T ss_dssp             EEETTTTEEEEEETTSCCCE-EEEECSSTTSSEEEEEEETT------EEEEEESSSCSEEEEESSSCC
T ss_pred             EEECCCCEEEEEeCCCCccE-EEEeCCCCCCCCEEEEEeCC------EEEEecCCCCeEEEEEcCCCC
Confidence            44 45678999998764422 22222222334557776433      267777777888888855553

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.02  E-value=0.014  Score=57.44  Aligned_cols=235  Identities=14%  Similarity=0.090  Sum_probs=133.0

Q ss_pred             EEEEee-CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC--Ce-EEEEecCCeEEEEeCCCCccccc
Q 013717          102 GCIAVH-HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD--GK-IFTAHQDCKIRVWQLTPTKHHKL  177 (437)
Q Consensus       102 ~~l~~~-~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~-l~s~~~dg~i~iwd~~~~~~~~~  177 (437)
                      .|.+.. ..+|+.+....|+..++.......+.      .....+..|+|..  +. +++-...+.|+.+++........
T Consensus       388 ~C~~~~~~p~Ll~an~~~Ir~i~l~~~~~~~l~------~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~  461 (791)
T 3m0c_C          388 ACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLI------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS  461 (791)
T ss_dssp             CCEETTSCCEEEEECBSSEEEECTTSCCCEEEE------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------
T ss_pred             eeeecccccccccccccceeEeeccCCcceeee------cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc
Confidence            344444 34555555558888888765333332      2345678899984  34 44555567888888864321000


Q ss_pred             ccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEE-EEECCCcEEEEECCCcceEEEeeccccc
Q 013717          178 KTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIY-SVSWDKSLKIWRASDLRCLESIKAHEDA  254 (437)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~  254 (437)
                      ..                          .++.........|+++.  +.|+ +-...+.|.+.++........+......
T Consensus       462 ~~--------------------------~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~  515 (791)
T 3m0c_C          462 YD--------------------------TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK  515 (791)
T ss_dssp             CE--------------------------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCC
T ss_pred             ee--------------------------EEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCC
Confidence            00                          00111223445677764  4444 4456788999998755443333334456


Q ss_pred             EEEEEEecC-CeEEEEe-CC-CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCc
Q 013717          255 VNAVAVSAG-GTVYTGS-AD-RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSA  330 (437)
Q Consensus       255 v~~~~~~~~-~~l~~~~-~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~  330 (437)
                      ...|++.|. +.|+... .. +.|...++....    ....+...-.....|++++.+..|+.+. ..+.|..+++....
T Consensus       516 P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~----~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          516 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             EEEEEEETTTTEEEEEECSSSCEEEEEETTSCC----EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cceEEEecCCCCEEEecCCCCCeEEEEecCCCc----eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence            889999986 5554443 33 778888876332    1122223335788999998766666654 45689999986543


Q ss_pred             cceEEeeeecccccceEEEEeeCCEEEEE-eCCCcEEEeeCCCCC
Q 013717          331 NHMVVTGALRGHGKAILCLINVAGLLMSG-SADRTVRIWQRGSDG  374 (437)
Q Consensus       331 ~~~~~~~~~~~~~~~i~~~~~~~~~l~~~-~~dg~i~iwd~~~~~  374 (437)
                      .. .+... .+......+++..++.|+.. ...+.|...+..+++
T Consensus       592 ~~-~v~~~-~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~  634 (791)
T 3m0c_C          592 RK-TILED-EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS  634 (791)
T ss_dssp             CE-EEEEC-TTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             eE-EEecC-CCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCc
Confidence            32 22211 11223345677677755444 456778888876665

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.01  E-value=0.0025  Score=55.36  Aligned_cols=234  Identities=10%  Similarity=0.154  Sum_probs=118.8

Q ss_pred             eCCEEEEEec-----CeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEec----C-----CeEEEEeCCC
Q 013717          107 HHNFLYAASS-----HEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQ----D-----CKIRVWQLTP  171 (437)
Q Consensus       107 ~~~~l~s~~~-----d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~----d-----g~i~iwd~~~  171 (437)
                      .+.+++.|+.     +.+.+||..+.++..+..+....   .. .+++..++. ++.|+.    +     ..+.+||..+
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r---~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~   99 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPR---SG-LAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMT   99 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCC---BS-CEEEEETTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccc---cc-ceEEEECCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence            3556666652     28999999998888776543211   11 123334555 556654    2     4577888876


Q ss_pred             CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECC-----CcEEEEECCCcceEE
Q 013717          172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWD-----KSLKIWRASDLRCLE  246 (437)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~  246 (437)
                      .+-... ..++.                           .......+.+....++.|+.+     ..+.+||..+.+-..
T Consensus       100 ~~W~~~-~~~p~---------------------------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  151 (308)
T 1zgk_A          100 NQWSPC-APMSV---------------------------PRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHL  151 (308)
T ss_dssp             TEEEEC-CCCSS---------------------------CCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEE
T ss_pred             CeEeEC-CCCCc---------------------------CccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeE
Confidence            643222 11111                           111122233444555555533     458889987764332


Q ss_pred             E--eecccccEEEEEEecCCe-EEEEeCC-----CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC
Q 013717          247 S--IKAHEDAVNAVAVSAGGT-VYTGSAD-----RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD  318 (437)
Q Consensus       247 ~--~~~~~~~v~~~~~~~~~~-l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  318 (437)
                      .  +......-.++.+  +++ ++.|+.+     ..+.+||+..+  .+..+..+.........+.+  ++++++.|+.+
T Consensus       152 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  225 (308)
T 1zgk_A          152 VAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERN--EWRMITAMNTIRSGAGVCVL--HNCIYAAGGYD  225 (308)
T ss_dssp             CCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             CCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCC--eEeeCCCCCCccccceEEEE--CCEEEEEeCCC
Confidence            2  1111111222222  566 6666654     45888887543  23332222211122222233  56777777664


Q ss_pred             -----CcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCC-----CcEEEeeCCCCCCeeeeee
Q 013717          319 -----RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSAD-----RTVRIWQRGSDGRFGCLAV  381 (437)
Q Consensus       319 -----g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~  381 (437)
                           ..+.+||+.+.+  +...............+...+.+++.|+.+     ..+.+||..+.+ +..+..
T Consensus       226 ~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~~  295 (308)
T 1zgk_A          226 GQDQLNSVERYDVETET--WTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT-WSEVTR  295 (308)
T ss_dssp             SSSBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE-EEEEEE
T ss_pred             CCCccceEEEEeCCCCc--EEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCE-EeecCC
Confidence                 568999998653  222222222122223334455577777654     357788887643 444433

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=98.01  E-value=0.0021  Score=57.16  Aligned_cols=235  Identities=13%  Similarity=0.087  Sum_probs=115.4

Q ss_pred             eCCEEEEEecC--eEEEEeCCC--CceeeeeccccCCCCcccEEEEEEeCCe-EEEEec-C---------CeEEEEeCCC
Q 013717          107 HHNFLYAASSH--EINVYDRTG--TTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQ-D---------CKIRVWQLTP  171 (437)
Q Consensus       107 ~~~~l~s~~~d--~v~vwd~~~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~-d---------g~i~iwd~~~  171 (437)
                      .+.+++.|+.+  .+.+||...  ..|..+..+..   ....-.+++..++. ++.|+. +         ..+.+||..+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~---~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~   95 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPG---GPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT   95 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTT---CCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCC---CcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence            45666666644  899999974  66777766531   11111223334555 556655 2         4588888877


Q ss_pred             CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECC--------------------
Q 013717          172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWD--------------------  231 (437)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d--------------------  231 (437)
                      .+-..... .+.                          .......++.....+++.|+.+                    
T Consensus        96 ~~W~~~~~-~~p--------------------------~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~  148 (357)
T 2uvk_A           96 NSWVKLMS-HAP--------------------------MGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTA  148 (357)
T ss_dssp             TEEEECSC-CCS--------------------------SCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHH
T ss_pred             CcEEECCC-CCC--------------------------cccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccc
Confidence            65322211 110                          0112223344555677777754                    


Q ss_pred             -------------------CcEEEEECCCcceEEE--eecccccEEEEEEecCCe-EEEEeC------CCeEEEecCCCC
Q 013717          232 -------------------KSLKIWRASDLRCLES--IKAHEDAVNAVAVSAGGT-VYTGSA------DRKIRVWAKPFN  283 (437)
Q Consensus       232 -------------------g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~-l~~~~~------dg~v~iwd~~~~  283 (437)
                                         ..+.+||..+.+-...  +......-.+++.. +++ ++.|+.      ...+.+||++..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~  227 (357)
T 2uvk_A          149 IDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGN  227 (357)
T ss_dssp             HHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC--
T ss_pred             hhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCC
Confidence                               5789999887643322  22111111233333 556 566653      345677776333


Q ss_pred             cccceeeEEeeCccccEEEEEEccCCCEEEEEeCC----------------------CcEEEEECCCCccceEEeeeecc
Q 013717          284 EKRHALIATLEKHKSAVNALALSDDGTVLFSGACD----------------------RSILVWDREDSANHMVVTGALRG  341 (437)
Q Consensus       284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~~~~~~~~~~~~  341 (437)
                      ...+..+..+..........+...++++++.|+.+                      ..+.+||+.+.+-.  ....+..
T Consensus       228 ~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~--~~~~~p~  305 (357)
T 2uvk_A          228 NLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWD--KSGELSQ  305 (357)
T ss_dssp             -CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CE--EEEECSS
T ss_pred             CCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCcee--eCCCCCC
Confidence            33444333321111111111222356677777632                      25789999865432  2333322


Q ss_pred             cccceEEEEeeCCEEEEEeCCC------cEEEeeCCCCC
Q 013717          342 HGKAILCLINVAGLLMSGSADR------TVRIWQRGSDG  374 (437)
Q Consensus       342 ~~~~i~~~~~~~~~l~~~~~dg------~i~iwd~~~~~  374 (437)
                      ......++...+.+++.|+.++      .|.++++++++
T Consensus       306 ~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~  344 (357)
T 2uvk_A          306 GRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNK  344 (357)
T ss_dssp             CCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred             CcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence            2222344556666777787653      35666888766

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.99  E-value=0.0093  Score=54.45  Aligned_cols=236  Identities=11%  Similarity=0.059  Sum_probs=126.9

Q ss_pred             ccEEEEEEeC----CeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717          143 GSVKSVTFCD----GKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL  218 (437)
Q Consensus       143 ~~v~~l~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  218 (437)
                      .....|++++    +.|+.+...+.|+.++..+++......                               .......+
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-------------------------------~~~~P~gi  187 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-------------------------------NIGQCADV  187 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-------------------------------CCSCEEEE
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-------------------------------CCCCccEE
Confidence            3467888986    347666655889899887665332221                               23457788


Q ss_pred             EeCC-CeEEEEECCC-----cEEEEECCCcce-EEEeecccccEEEEEEec-CCeEEEEe-CCCeEEEecCCCCccccee
Q 013717          219 AVNN-GLIYSVSWDK-----SLKIWRASDLRC-LESIKAHEDAVNAVAVSA-GGTVYTGS-ADRKIRVWAKPFNEKRHAL  289 (437)
Q Consensus       219 ~~~~-~~l~~~~~dg-----~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~-~~~l~~~~-~dg~v~iwd~~~~~~~~~~  289 (437)
                      ++++ ..|+.+...+     .+...+...+.. ...+. .......++++| ++.|..+. .++.|+.+|........ .
T Consensus       188 avd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~  265 (433)
T 4hw6_A          188 NFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-E  265 (433)
T ss_dssp             EECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-E
T ss_pred             EECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-E
Confidence            8887 3355555422     133333221111 11121 223456688898 67755444 56789999875332101 1


Q ss_pred             eEEeeCccccEEEEEEccCCCEEEEE-eCCCcEEEEECCCCcc----ceEEeeeec--c---------cccceEEEEe--
Q 013717          290 IATLEKHKSAVNALALSDDGTVLFSG-ACDRSILVWDREDSAN----HMVVTGALR--G---------HGKAILCLIN--  351 (437)
Q Consensus       290 ~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~----~~~~~~~~~--~---------~~~~i~~~~~--  351 (437)
                      +... +.......++|+|+|++|+.+ ...+.|+.+++.....    ...+.....  +         .-.....+++  
T Consensus       266 ~~~~-~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~  344 (433)
T 4hw6_A          266 EVMM-DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVK  344 (433)
T ss_dssp             EEEC-SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEE
T ss_pred             Eecc-CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEc
Confidence            1111 112233479999999955554 4568899988753211    111222100  0         0112344555  


Q ss_pred             -------eCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCC------------------CCCeeEEEEEccCCCCceE
Q 013717          352 -------VAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGH------------------TKPVKSLTAVTEEGQNGVV  404 (437)
Q Consensus       352 -------~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h------------------~~~v~~l~~~~~~~~~~~~  404 (437)
                             +.+  ++++-...+.|+.++.. +.    +.++.+.                  -..-..|++.|..+    .
T Consensus       345 n~~y~~dd~~g~lyvaD~~n~~I~~~~~~-G~----v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g----~  415 (433)
T 4hw6_A          345 NEAYAGEEDEYDFYFCDRDSHTVRVLTPE-GR----VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRK----C  415 (433)
T ss_dssp             CGGGTTSSCCEEEEEEETTTTEEEEECTT-SE----EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTT----E
T ss_pred             cccccccCCCCcEEEEECCCCEEEEECCC-CC----EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCC----E
Confidence                   333  55555556788888753 22    2222211                  12367899994333    3


Q ss_pred             EEEEecCCCcEEEEeec
Q 013717          405 SVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       405 ~l~s~~~dg~i~iw~~~  421 (437)
                      ++++=..+++|+..+++
T Consensus       416 lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          416 FYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEEGGGTEEEEEEEC
T ss_pred             EEEEeCCCCEEEEEecC
Confidence            66666667888888775

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.99  E-value=0.0028  Score=54.85  Aligned_cols=217  Identities=14%  Similarity=0.236  Sum_probs=111.0

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecC-----CeEEEEeCCCCcccccccccCccccceeee
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQD-----CKIRVWQLTPTKHHKLKTTLPTVNDRLLRF  191 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  191 (437)
                      .+.+||..+..+..+..+....   .. .+++..++. ++.|+.+     ..+.+||..+.+-... ..++.        
T Consensus        31 ~~~~~d~~~~~W~~~~~~p~~r---~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~--------   97 (302)
T 2xn4_A           31 SVECYDFKEERWHQVAELPSRR---CR-AGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV-ANMRD--------   97 (302)
T ss_dssp             CEEEEETTTTEEEEECCCSSCC---BS-CEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEE-CCCSS--------
T ss_pred             cEEEEcCcCCcEeEcccCCccc---cc-ceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeC-CCCCc--------
Confidence            6889999998887775543211   11 122333555 6666654     3577888876643222 11110        


Q ss_pred             cCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCC-----cEEEEECCCcceEEE--eecccccEEEEEEecCC
Q 013717          192 MLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDK-----SLKIWRASDLRCLES--IKAHEDAVNAVAVSAGG  264 (437)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~  264 (437)
                                         .......+.+....++.|+.++     .+.+||+.+.+-...  +....... +++.. ++
T Consensus        98 -------------------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~  156 (302)
T 2xn4_A           98 -------------------RRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVGVV-GG  156 (302)
T ss_dssp             -------------------CCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TT
T ss_pred             -------------------cccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEEEE-CC
Confidence                               1111223334456666676553     477888877653322  11111111 22222 56


Q ss_pred             e-EEEEeCC-------CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC-----CcEEEEECCCCcc
Q 013717          265 T-VYTGSAD-------RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD-----RSILVWDREDSAN  331 (437)
Q Consensus       265 ~-l~~~~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~  331 (437)
                      + ++.|+.+       ..+.+||+.++  .+..+..+.........+.+  ++++++.|+.+     ..+.+||+.+.+ 
T Consensus       157 ~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-  231 (302)
T 2xn4_A          157 LLYAVGGYDVASRQCLSTVECYNATTN--EWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA-  231 (302)
T ss_dssp             EEEEECCEETTTTEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE-
T ss_pred             EEEEEeCCCCCCCccccEEEEEeCCCC--cEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC-
Confidence            6 5666542       45788887543  23333222221122222222  56777777664     368899997653 


Q ss_pred             ceEEeeeecccccceEEEEeeCCEEEEEeCCC-----cEEEeeCCCCC
Q 013717          332 HMVVTGALRGHGKAILCLINVAGLLMSGSADR-----TVRIWQRGSDG  374 (437)
Q Consensus       332 ~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~  374 (437)
                       +...............+...+.+++.|+.++     .+.+||..+..
T Consensus       232 -W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          232 -WRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             -EEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             -EeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence             2222222211122233444555777777654     48899988654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.93  E-value=0.0066  Score=52.38  Aligned_cols=189  Identities=10%  Similarity=0.176  Sum_probs=97.4

Q ss_pred             EeCCCeEEEEECC-----CcEEEEECCCcc---eEE--EeecccccEEEEEEecCCe-EEEEeCC-----CeEEEecCCC
Q 013717          219 AVNNGLIYSVSWD-----KSLKIWRASDLR---CLE--SIKAHEDAVNAVAVSAGGT-VYTGSAD-----RKIRVWAKPF  282 (437)
Q Consensus       219 ~~~~~~l~~~~~d-----g~i~iwd~~~~~---~~~--~~~~~~~~v~~~~~~~~~~-l~~~~~d-----g~v~iwd~~~  282 (437)
                      ......++.|+.+     ..+.+||..+.+   -..  .+........++.+  +++ ++.|+.+     ..+.+||+.+
T Consensus        60 ~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~  137 (301)
T 2vpj_A           60 SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNI  137 (301)
T ss_dssp             EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCC
Confidence            3444666666654     468999988765   222  22211112222222  566 6666643     3678888754


Q ss_pred             CcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC-----CcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEE
Q 013717          283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD-----RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLM  357 (437)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~  357 (437)
                      +  .+..+..+.........+.+  ++++++.|+.+     ..+.+||+.+.+-  ..............++...+.+++
T Consensus       138 ~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~~~~i~v  211 (301)
T 2vpj_A          138 D--QWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHW--TNVTPMATKRSGAGVALLNDHIYV  211 (301)
T ss_dssp             T--EEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE--EEECCCSSCCBSCEEEEETTEEEE
T ss_pred             C--eEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcE--EeCCCCCcccccceEEEECCEEEE
Confidence            3  33333333222222222222  67777777654     4588999877532  222222222222234444555777


Q ss_pred             EEeCC-----CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC-----CcEEEEeeccC
Q 013717          358 SGSAD-----RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD-----GEIRAWQVSVS  423 (437)
Q Consensus       358 ~~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~  423 (437)
                      .|+.+     ..+.+||..+.. +..+..+......-..+ .. ++     ++++.|+.+     ..|.+||+++.
T Consensus       212 ~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r~~~~~~-~~-~~-----~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          212 VGGFDGTAHLSSVEAYNIRTDS-WTTVTSMTTPRCYVGAT-VL-RG-----RLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             ECCBCSSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEE-EE-TT-----EEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             EeCCCCCcccceEEEEeCCCCc-EEECCCCCCcccceeEE-EE-CC-----EEEEEcCcCCCcccccEEEEcCCCC
Confidence            77764     468999998754 44443332222222222 22 33     377777765     35677777654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.91  E-value=0.0082  Score=51.67  Aligned_cols=205  Identities=10%  Similarity=0.103  Sum_probs=119.4

Q ss_pred             cccEEEEEEeC--CeEEEEe-cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717          142 SGSVKSVTFCD--GKIFTAH-QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL  218 (437)
Q Consensus       142 ~~~v~~l~~~~--~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  218 (437)
                      .....+++|.+  +.++.++ ..++|..|+...+.....  .++....       +              ......+..|
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~--~~~~~s~-------~--------------g~~~~~~sGl   68 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV--VIDGASS-------N--------------GDGEQQMSGL   68 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE--CCTTTCC-------S--------------SCCSEEEEEE
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE--ecCCccc-------c--------------CCCcceeeEE
Confidence            34456788885  4466665 789999999875532222  1111000       0              0011235788


Q ss_pred             Ee---CC-CeEEEEEC--------------CCcEEEEECC---CcceEEEee--cc-----------cccEEEEEEecCC
Q 013717          219 AV---NN-GLIYSVSW--------------DKSLKIWRAS---DLRCLESIK--AH-----------EDAVNAVAVSAGG  264 (437)
Q Consensus       219 ~~---~~-~~l~~~~~--------------dg~i~iwd~~---~~~~~~~~~--~~-----------~~~v~~~~~~~~~  264 (437)
                      .+   ++ +.|++...              +..|..||+.   +++.+....  ..           ......++..++|
T Consensus        69 ~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G  148 (334)
T 2p9w_A           69 SLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG  148 (334)
T ss_dssp             EESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS
T ss_pred             EEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC
Confidence            88   45 44444322              6789999998   777766554  11           1248899999999


Q ss_pred             e-EEEEeCC-CeEEEecCCCCcccceeeE-Ee--eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEee--
Q 013717          265 T-VYTGSAD-RKIRVWAKPFNEKRHALIA-TL--EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTG--  337 (437)
Q Consensus       265 ~-l~~~~~d-g~v~iwd~~~~~~~~~~~~-~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--  337 (437)
                      . .++++.. +.|..++.....  ..... ..  .......+.|++.|+|+.|++....|.+..+|+...........  
T Consensus       149 naYVt~s~~~~~I~rV~pdG~~--~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~  226 (334)
T 2p9w_A          149 NSYVAFALGMPAIARVSADGKT--VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKIN  226 (334)
T ss_dssp             CEEEEEEESSCEEEEECTTSCC--EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEES
T ss_pred             CEEEeCCCCCCeEEEEeCCCCE--EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeeccccc
Confidence            9 7778888 887777664321  11111 11  11122367899999999998887799999999984322101111  


Q ss_pred             ----eecccccceEEEEeeCCE-EEEEeCCCcEEEeeCCC
Q 013717          338 ----ALRGHGKAILCLINVAGL-LMSGSADRTVRIWQRGS  372 (437)
Q Consensus       338 ----~~~~~~~~i~~~~~~~~~-l~~~~~dg~i~iwd~~~  372 (437)
                          .+. ....+.....+++. +++....+.+.+.+...
T Consensus       227 G~~~~~~-~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          227 GDFGTLS-GTEKIVTVPVGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             SCCCCCT-TEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred             CCccccc-CcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence                111 11222333455665 56666677666666554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.85  E-value=0.011  Score=51.06  Aligned_cols=198  Identities=13%  Similarity=0.062  Sum_probs=110.7

Q ss_pred             CcEEEEEeCC-CeEEEE-ECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEe--CCC-eEEEecCCCCcccc
Q 013717          213 DAVTGLAVNN-GLIYSV-SWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGS--ADR-KIRVWAKPFNEKRH  287 (437)
Q Consensus       213 ~~v~~~~~~~-~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~--~dg-~v~iwd~~~~~~~~  287 (437)
                      .....+++++ ..|+.+ ..++.|..||... +....+. .......+++.++++++++.  .++ .|..+|.....  .
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~--~  107 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT--V  107 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC--E
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe--E
Confidence            4567889987 344444 4788999999765 3333333 34568899999999955544  222 46666654332  1


Q ss_pred             eeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEee------eecccccceEEEEeeCCEE-EEEe
Q 013717          288 ALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTG------ALRGHGKAILCLINVAGLL-MSGS  360 (437)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~l-~~~~  360 (437)
                      ..+... ........++..+++..+++-..++.|+++|...+........      ...........++.++..| ++-.
T Consensus       108 ~~~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~  186 (306)
T 2p4o_A          108 ETLLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNT  186 (306)
T ss_dssp             EEEEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEET
T ss_pred             EEEEeC-CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeC
Confidence            112222 1222345555555555455544688999999865321111000      0001112334557777754 4455


Q ss_pred             CCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          361 ADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       361 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      ..+.|..|++...........+.. ......|++.+++.     ++++....+.|.+++.+
T Consensus       187 ~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~-----l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          187 EKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGN-----LYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCC-----EEEECBTTCCEEEECTT
T ss_pred             CCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCC-----EEEEeCCCCeEEEECCC
Confidence            578899999875221111111111 13456788888773     56666667889988864

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.84  E-value=0.012  Score=50.92  Aligned_cols=217  Identities=12%  Similarity=0.007  Sum_probs=118.9

Q ss_pred             ccEEEEEEeCCe-EEEE-ecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe
Q 013717          143 GSVKSVTFCDGK-IFTA-HQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV  220 (437)
Q Consensus       143 ~~v~~l~~~~~~-l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  220 (437)
                      .....++|+++. |+.+ ..++.|..||.+... ....                               ........+++
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~~-------------------------------~~~~~p~gia~   79 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHA-------------------------------TVEGKVSGLAF   79 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEE-------------------------------ECSSEEEEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EEEE-------------------------------eCCCCceeEEE
Confidence            567788998654 5544 467889888876432 1110                               12235778888


Q ss_pred             CC-CeEEEEE-C-CC-cEEEEECCCcceEEEeec-ccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeE---
Q 013717          221 NN-GLIYSVS-W-DK-SLKIWRASDLRCLESIKA-HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIA---  291 (437)
Q Consensus       221 ~~-~~l~~~~-~-dg-~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~---  291 (437)
                      .+ ..++.+. . ++ .|..+|..+++....... .......++..+++. +++-..++.|.++|......  ....   
T Consensus        80 ~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~--~v~~~~~  157 (306)
T 2p4o_A           80 TSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG--SIWLEHP  157 (306)
T ss_dssp             CTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE--EEEEECG
T ss_pred             cCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE--eEEEECC
Confidence            87 3345444 2 22 477778777765433221 122344555566666 44444688888888653210  1110   


Q ss_pred             -----EeeCccccEEEEEEccCCCEEEEE-eCCCcEEEEECCC-Cccc-eEEeeeecccccceEEEEeeCCEEEEEeCCC
Q 013717          292 -----TLEKHKSAVNALALSDDGTVLFSG-ACDRSILVWDRED-SANH-MVVTGALRGHGKAILCLINVAGLLMSGSADR  363 (437)
Q Consensus       292 -----~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~-~~~~-~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg  363 (437)
                           .....-.....+  +++++.|+.+ ...+.|..|++.. ++.. .......  ....-.++..+++++++....+
T Consensus       158 ~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~~  233 (306)
T 2p4o_A          158 MLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYN  233 (306)
T ss_dssp             GGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTC
T ss_pred             ccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCCC
Confidence                 000111234555  7888766555 4578899999875 2210 1111111  1112245555666766666678


Q ss_pred             cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEE---ccCC
Q 013717          364 TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAV---TEEG  399 (437)
Q Consensus       364 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~~  399 (437)
                      .|.++|.. ++ ...+..+.......++++|.   ++++
T Consensus       234 ~V~~~~~~-G~-~~~~~~~~~~~~~p~~~a~~g~~~d~~  270 (306)
T 2p4o_A          234 SVVRIAPD-RS-TTIIAQAEQGVIGSTAVAFGQTEGDCT  270 (306)
T ss_dssp             CEEEECTT-CC-EEEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred             eEEEECCC-CC-EEEEeecccccCCceEEEEecccCCCC
Confidence            89999875 33 11222333333568899998   6654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.84  E-value=0.0089  Score=51.72  Aligned_cols=190  Identities=10%  Similarity=0.120  Sum_probs=97.5

Q ss_pred             EEeCCCeEEEEECC----CcEEEEECCCcceEEE--eecccccEEEEEEecCCe-EEEEeCC------CeEEEecCCCCc
Q 013717          218 LAVNNGLIYSVSWD----KSLKIWRASDLRCLES--IKAHEDAVNAVAVSAGGT-VYTGSAD------RKIRVWAKPFNE  284 (437)
Q Consensus       218 ~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~-l~~~~~d------g~v~iwd~~~~~  284 (437)
                      +.+....++.|+.+    ..+.+||..+.+-...  +.........+.+  +++ ++.|+.+      ..+.+||...+.
T Consensus        52 ~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~  129 (306)
T 3ii7_A           52 VFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES  129 (306)
T ss_dssp             EEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred             EEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence            33455666677654    6788999887653322  2111111222222  566 6677654      458888876432


Q ss_pred             ccceeeEEeeCccccEEEEEEccCCCEEEEEeC---------CCcEEEEECCCCccceEEeeeecccccceEEEEeeCCE
Q 013717          285 KRHALIATLEKHKSAVNALALSDDGTVLFSGAC---------DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGL  355 (437)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  355 (437)
                        +..+..+.........+.+  ++++++.|+.         -..+.+||+.+.+  +...............+...+.+
T Consensus       130 --W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i  203 (306)
T 3ii7_A          130 --WHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATET--WTELCPMIEARKNHGLVFVKDKI  203 (306)
T ss_dssp             --EEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEE
T ss_pred             --eEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCe--EEECCCccchhhcceEEEECCEE
Confidence              3333222211111122222  5666676654         3458899998753  22222222222222333445556


Q ss_pred             EEEEeCC-----CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC-----CcEEEEeeccC
Q 013717          356 LMSGSAD-----RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD-----GEIRAWQVSVS  423 (437)
Q Consensus       356 l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~  423 (437)
                      ++.|+.+     ..+.+||..+.+ +..+..+.........+.+  ++     ++++.|+.+     ..+.+||+++.
T Consensus       204 ~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~-----~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          204 FAVGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKCAAV--GS-----IVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             EEECCEETTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEEEEE--TT-----EEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             EEEeCCCCCCCCceEEEeeCCCCc-EEECCCCCCCccceeEEEE--CC-----EEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            6666654     358899988754 4444433322222223322  22     477777754     45788887664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.83  E-value=0.03  Score=55.15  Aligned_cols=198  Identities=12%  Similarity=-0.036  Sum_probs=113.4

Q ss_pred             CCCcEEEEEeCC--CeEEEE-ECCCcEEEEECCCc----ceEEEeecccccEEEEEEecCC-e-EEEEeCCCeEEEecCC
Q 013717          211 HGDAVTGLAVNN--GLIYSV-SWDKSLKIWRASDL----RCLESIKAHEDAVNAVAVSAGG-T-VYTGSADRKIRVWAKP  281 (437)
Q Consensus       211 ~~~~v~~~~~~~--~~l~~~-~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~dg~v~iwd~~  281 (437)
                      ....+.+|+++.  +.|+.. ...+.|+.+++...    .....+.........|++.+.+ . +++-...+.|.+.++.
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            344567888876  555544 45577888888653    2223333234556788998766 4 5566667899999886


Q ss_pred             CCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-C-CcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEE
Q 013717          282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-D-RSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLM  357 (437)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~  357 (437)
                      ...    ....+.........|++.|.+.+|+.+.. + +.|.+.++..... ..+.   .........|+.+  ...|+
T Consensus       502 G~~----~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~~lv---~~~l~~P~GLavD~~~~~LY  573 (791)
T 3m0c_C          502 GVK----RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLV---TENIQWPNGITLDLLSGRLY  573 (791)
T ss_dssp             SSS----EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEE---CSSCSCEEEEEEETTTTEEE
T ss_pred             CCe----EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-EEEE---eCCCCCceEEEEecCCCeEE
Confidence            432    11122234456889999997666665543 2 6788888875432 2221   1222345566665  44444


Q ss_pred             EE-eCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          358 SG-SADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       358 ~~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      .+ ...+.|..+++........+ .-.+.-....+|++..+      +++++-...+.|...+..++
T Consensus       574 waD~~~~~I~~~d~dG~~~~~v~-~~~~~l~~P~glav~~~------~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          574 WVDSKLHSISSIDVNGGNRKTIL-EDEKRLAHPFSLAVFED------KVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEE-ECTTTTSSEEEEEEETT------EEEEEETTTTEEEEEETTTC
T ss_pred             EEeCCCCcEEEEecCCCceEEEe-cCCCccCCCCEEEEeCC------EEEEEECCCCEEEEEeCCCC
Confidence            44 45668999998764422221 11122233456666443      26666666777877775554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.82  E-value=0.01  Score=51.22  Aligned_cols=190  Identities=11%  Similarity=0.182  Sum_probs=95.8

Q ss_pred             EeCCCeEEEEECC-----CcEEEEECCCcceEEE--eecccccEEEEEEecCCe-EEEEeCCC-----eEEEecCCCCcc
Q 013717          219 AVNNGLIYSVSWD-----KSLKIWRASDLRCLES--IKAHEDAVNAVAVSAGGT-VYTGSADR-----KIRVWAKPFNEK  285 (437)
Q Consensus       219 ~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~-l~~~~~dg-----~v~iwd~~~~~~  285 (437)
                      .+....++.|+.+     ..+.+||..+.+-...  +........++. . +++ ++.|+.++     .+.+||+.++  
T Consensus        59 ~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~d~~~~--  134 (302)
T 2xn4_A           59 YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-L-NGLLYAVGGFDGSTGLSSVEAYNIKSN--  134 (302)
T ss_dssp             EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEEEEECSSCEEEEEEEEETTTT--
T ss_pred             EECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-E-CCEEEEEcCCCCCccCceEEEEeCCCC--
Confidence            3444666666644     3588899877653322  111111122222 2 566 66776553     5777877543  


Q ss_pred             cceeeEEeeCccccEEEEEEccCCCEEEEEeCC-------CcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEE
Q 013717          286 RHALIATLEKHKSAVNALALSDDGTVLFSGACD-------RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMS  358 (437)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~  358 (437)
                      .+..+..+.........+.+  ++++++.|+.+       ..+.+||+.+.+  +..............+....+.+++.
T Consensus       135 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~  210 (302)
T 2xn4_A          135 EWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE--WTYIAEMSTRRSGAGVGVLNNLLYAV  210 (302)
T ss_dssp             EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred             eEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc--EEECCCCccccccccEEEECCEEEEE
Confidence            23333222221122222222  56677776543       358899987653  22222222222222334445557777


Q ss_pred             EeCC-----CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCC-----cEEEEeeccCC
Q 013717          359 GSAD-----RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDG-----EIRAWQVSVSC  424 (437)
Q Consensus       359 ~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg-----~i~iw~~~~~~  424 (437)
                      |+.+     ..+.+||..+.+ +..+..+......- +++.. ++     ++++.|+.++     .+.+||+++.+
T Consensus       211 GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~r~~~-~~~~~-~~-----~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          211 GGHDGPLVRKSVEVYDPTTNA-WRQVADMNMCRRNA-GVCAV-NG-----LLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             CCBSSSSBCCCEEEEETTTTE-EEEECCCSSCCBSC-EEEEE-TT-----EEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCCCCCcccceEEEEeCCCCC-EeeCCCCCCccccC-eEEEE-CC-----EEEEECCcCCCcccccEEEEcCCCCe
Confidence            7764     368899988754 44443332211111 22222 22     3777777654     48888887653

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.81  E-value=0.033  Score=55.10  Aligned_cols=266  Identities=12%  Similarity=0.199  Sum_probs=152.9

Q ss_pred             cCCeEEEEee-CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCccc
Q 013717           98 KLPIGCIAVH-HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHH  175 (437)
Q Consensus        98 ~~~V~~l~~~-~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~  175 (437)
                      ...|.||.-+ ..+|..|..+-+..||-..  .+......  ......|.++....++ |..|+.+| +..||..+.+..
T Consensus        21 ~n~V~~I~qD~~G~lWigT~~GL~ryDG~~--~~~~~~~~--~~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~   95 (758)
T 3ott_A           21 ASVVSCFLQDSEGLIWIGSNKGLFSYDGYS--TQQHFTYG--ENNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYE   95 (758)
T ss_dssp             CCCEEEEEECTTSCEEEEESSCEEEECSSC--EEECSCTT--STTSSCEEEEEEETTTEEEEEETTE-EEEEETTTTEEC
T ss_pred             cceEEEEEECCCCCEEEEECCCccccCCCc--eEEEEccC--CCCCceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEE
Confidence            4679999988 6677778777777788544  22221110  1234578888877554 77777665 788998765422


Q ss_pred             ccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEee-----c
Q 013717          176 KLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIK-----A  250 (437)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~  250 (437)
                      ....                              .....|.++....+.|..++.+ -|..+|..+++.. .+.     .
T Consensus        96 ~~~~------------------------------~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l  143 (758)
T 3ott_A           96 QPET------------------------------DFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLT-SFDTRRNGL  143 (758)
T ss_dssp             CCSC------------------------------CCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEE-EECHHHHCC
T ss_pred             Cccc------------------------------CCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEE-EeccCCCCc
Confidence            1000                              0123466665555777777776 6888998776543 231     1


Q ss_pred             ccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeC----ccccEEEEEEccCCCEEEEEeCCCcEEEEEC
Q 013717          251 HEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEK----HKSAVNALALSDDGTVLFSGACDRSILVWDR  326 (437)
Q Consensus       251 ~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (437)
                      ....|.++....++.+..|+.+| |..+|.....  .... ....    ....|.++...+++..|..|+. +-+..+|.
T Consensus       144 ~~~~i~~i~~d~~g~lWigt~~G-l~~~~~~~~~--~~~~-~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~  218 (758)
T 3ott_A          144 PNNTIYSIIRTKDNQIYVGTYNG-LCRYIPSNGK--FEGI-PLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFP  218 (758)
T ss_dssp             SCSCEEEEEECTTCCEEEEETTE-EEEEETTTTE--EEEE-CCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEET
T ss_pred             CCCeEEEEEEcCCCCEEEEeCCC-HhhCccCCCc--eEEe-cCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcC
Confidence            23568888888888877787654 6777654322  1111 0111    1234888888877776666664 45888998


Q ss_pred             CCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeec-----CCCCCeeEEEEEccCCC
Q 013717          327 EDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLE-----GHTKPVKSLTAVTEEGQ  400 (437)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~h~~~v~~l~~~~~~~~  400 (437)
                      .+.+..  ....+  ....|.++..+.+ .|..|+.+ -+.+++..+.. +..+....     -....|.++....++. 
T Consensus       219 ~~~~~~--~~~~l--~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-  291 (758)
T 3ott_A          219 STGQIK--QTEAF--HNNSIKSLALDGNGDLLAGTDN-GLYVYHNDTTP-LQHIIHDSRNIQSLTNNIIWNIFADQEHN-  291 (758)
T ss_dssp             TTTEEE--EEEEE--EEEEEEEEEECTTCCEEEEETT-EEEEECCTTSC-CEEECCCTTCTTSCSCSCEEEEEECTTCC-
T ss_pred             CCCeEE--eccCC--CCCeEEEEEEcCCCCEEEEeCC-ceeEEecCCCc-EEEEEcCCCCcCcCCcCeEEEEEEcCCCC-
Confidence            764321  11111  2345677776644 56666655 48888876543 11111100     1234588886655552 


Q ss_pred             CceEEEEEecCCCcEEEE
Q 013717          401 NGVVSVFSGSLDGEIRAW  418 (437)
Q Consensus       401 ~~~~~l~s~~~dg~i~iw  418 (437)
                           |..|...| +.++
T Consensus       292 -----lWiGT~~G-l~~~  303 (758)
T 3ott_A          292 -----IWLGTDYG-ISLS  303 (758)
T ss_dssp             -----EEEEESSS-EEEE
T ss_pred             -----EEEEeCCc-cccc
Confidence                 55555556 4433

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.81  E-value=0.014  Score=50.71  Aligned_cols=191  Identities=13%  Similarity=0.154  Sum_probs=116.9

Q ss_pred             CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecC----Ce---EEEEe--C--CCeEEEecCCCCcccceeeE
Q 013717          223 GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAG----GT---VYTGS--A--DRKIRVWAKPFNEKRHALIA  291 (437)
Q Consensus       223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~---l~~~~--~--dg~v~iwd~~~~~~~~~~~~  291 (437)
                      ..++.....+-+.+||+ +++.++.+..  +.++.+.+-|+    |+   ++.++  .  +++|.+|++......   +.
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~---l~  114 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT---LQ  114 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC---EE
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc---ee
Confidence            56676777889999999 8888888753  56777776653    22   33333  3  579999977432222   22


Q ss_pred             EeeC------cc-ccEEEEEE--ccC-CC-EEEEEeCCCcEEEEECC---CCccceEEeeeecccccceEEEEeeC--CE
Q 013717          292 TLEK------HK-SAVNALAL--SDD-GT-VLFSGACDRSILVWDRE---DSANHMVVTGALRGHGKAILCLINVA--GL  355 (437)
Q Consensus       292 ~~~~------~~-~~i~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~~~~i~~~~~~~--~~  355 (437)
                      .+..      .. ..+..+++  +|. ++ ++++...+|.+..|++.   .+.....+...+.- ...+-.+..++  ..
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~  193 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGR  193 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCe
Confidence            2211      11 45667777  774 44 68888899999999984   33233334444432 33455555654  49


Q ss_pred             EEEEeCCCcEEEeeCCCCC--Ceeeeeeec-CCC-CCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          356 LMSGSADRTVRIWQRGSDG--RFGCLAVLE-GHT-KPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       356 l~~~~~dg~i~iwd~~~~~--~~~~~~~~~-~h~-~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      |+.+-++.-|..|+.+...  ....+.... ++- ..+..|+..+..+. .+.+|+++=.+.+..+||.+
T Consensus       194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g-~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADG-KGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGG-CEEEEEEEGGGTEEEEEESS
T ss_pred             EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCC-CEEEEEEcCCCCEEEEEECC
Confidence            9999998666666644221  223444442 332 36889988643211 11355555467899999986

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.77  E-value=0.016  Score=50.33  Aligned_cols=194  Identities=13%  Similarity=0.045  Sum_probs=115.9

Q ss_pred             cEEEEEeCC--CeEEEE-ECCCcEEEEECCCcceE-EEeecccccEEEEEEec-CCe-EEEEeCCCeEEEecCCCCcccc
Q 013717          214 AVTGLAVNN--GLIYSV-SWDKSLKIWRASDLRCL-ESIKAHEDAVNAVAVSA-GGT-VYTGSADRKIRVWAKPFNEKRH  287 (437)
Q Consensus       214 ~v~~~~~~~--~~l~~~-~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~-~~~-l~~~~~dg~v~iwd~~~~~~~~  287 (437)
                      ...++.|++  +.|+.. ...+.|..+++...... ..+...-.....+++.+ .+. +++-...+.|.++++.....  
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--  113 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR--  113 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE--
Confidence            456788876  555544 45678999998765321 22222234566788886 455 45556678999998764321  


Q ss_pred             eeeEEeeCccccEEEEEEccCCCEEEEEeC--CCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEE-EEEeCC
Q 013717          288 ALIATLEKHKSAVNALALSDDGTVLFSGAC--DRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLL-MSGSAD  362 (437)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~d  362 (437)
                        .............+++.|.+..|+.+..  .+.|..+++..... ..+..   ..-.....++++  +..| ++=+..
T Consensus       114 --~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~---~~l~~Pnglavd~~~~~lY~aD~~~  187 (318)
T 3sov_A          114 --KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIIIN---SEIYWPNGLTLDYEEQKLYWADAKL  187 (318)
T ss_dssp             --EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-EEEEC---SSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             --EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-EEEEE---CCCCCccEEEEeccCCEEEEEECCC
Confidence              1112234456789999997666666553  57888888864322 22211   112234566666  3444 444557


Q ss_pred             CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          363 RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       363 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      +.|..+|+...... .  ...+......++++..+      .++++-...+.|..++..+++
T Consensus       188 ~~I~~~d~dG~~~~-~--~~~~~~~~P~glav~~~------~lywtd~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          188 NFIHKSNLDGTNRQ-A--VVKGSLPHPFALTLFED------ILYWTDWSTHSILACNKYTGE  240 (318)
T ss_dssp             TEEEEEETTSCSCE-E--EECSCCSCEEEEEEETT------EEEEEETTTTEEEEEETTTCC
T ss_pred             CEEEEEcCCCCceE-E--EecCCCCCceEEEEeCC------EEEEEecCCCeEEEEECCCCC
Confidence            78999998754321 1  12223445677777543      267777777889888886654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.73  E-value=0.016  Score=50.28  Aligned_cols=225  Identities=12%  Similarity=0.086  Sum_probs=110.6

Q ss_pred             EEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEec----C-------CeEEEEeCCCCcccccc
Q 013717          111 LYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQ----D-------CKIRVWQLTPTKHHKLK  178 (437)
Q Consensus       111 l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~----d-------g~i~iwd~~~~~~~~~~  178 (437)
                      |+.-+.+.+.+||..++++.. ..+..  .....-.+++..++. ++.|+.    +       ..+..||..+.+-.. +
T Consensus         7 l~~~GG~~~~~yd~~~~~W~~-~~~~~--p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~   82 (315)
T 4asc_A            7 IFMISEEGAVAYDPAANECYC-ASLSS--QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-M   82 (315)
T ss_dssp             EEEEETTEEEEEETTTTEEEE-EECCC--CSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-C
T ss_pred             EEEEcCCceEEECCCCCeEec-CCCCC--CCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-C
Confidence            333333688899999988875 33211  112222333444555 666663    1       126778887665322 1


Q ss_pred             cccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECC--------CcEEEEECCCcceEEE--e
Q 013717          179 TTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWD--------KSLKIWRASDLRCLES--I  248 (437)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~--~  248 (437)
                      ..++.                           .......+.+....++.|+.+        ..+.+||..+.+-...  +
T Consensus        83 ~~~p~---------------------------~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~  135 (315)
T 4asc_A           83 PPLPS---------------------------PRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL  135 (315)
T ss_dssp             CCBSS---------------------------CEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCC
T ss_pred             CCCCc---------------------------chhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCC
Confidence            11110                           000112233344566666632        4588999887643221  1


Q ss_pred             ecccccEEEEEEecCCe-EEEEeC------CCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC--
Q 013717          249 KAHEDAVNAVAVSAGGT-VYTGSA------DRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR--  319 (437)
Q Consensus       249 ~~~~~~v~~~~~~~~~~-l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--  319 (437)
                      ....... +++. -+++ ++.|+.      -..+.+||..++  .+..+..+.........+.+  ++++++.|+.++  
T Consensus       136 p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~  209 (315)
T 4asc_A          136 PYVVYGH-TVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKF--EWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTG  209 (315)
T ss_dssp             SSCCBSC-EEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSS
T ss_pred             CCcccce-eEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCC--eEEECCCCCCchhceEEEEE--CCEEEEEeccCCCC
Confidence            1111111 2222 3566 666665      246888887643  23333222211111222222  567777777654  


Q ss_pred             ---cEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCC--------------cEEEeeCCCCC
Q 013717          320 ---SILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADR--------------TVRIWQRGSDG  374 (437)
Q Consensus       320 ---~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~  374 (437)
                         .+.+||+.+.+  +..............++...+.+++.|+.++              .+.+||..+.+
T Consensus       210 ~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          210 LTSSAEVYSITDNK--WAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             EEEEEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             ccceEEEEECCCCe--EEECCCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence               58889987653  2222222222222234445555666776532              36788887654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.70  E-value=0.04  Score=52.86  Aligned_cols=222  Identities=13%  Similarity=0.052  Sum_probs=132.6

Q ss_pred             CEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC--Ce-EEEEecCCeEEEEeCCCCcccccccccCccc
Q 013717          109 NFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD--GK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVN  185 (437)
Q Consensus       109 ~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  185 (437)
                      .+|+-+....|+..++++........+    ..-..+..|+|++  +. +++-..++.|..++++.........      
T Consensus         7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~----~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~------   76 (628)
T 4a0p_A            7 AFLLFSRRADIRRISLETNNNNVAIPL----TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE------   76 (628)
T ss_dssp             CEEEEEETTEEEEEESSCTTCEEECCC----CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC------
T ss_pred             cEEEEEeCCcEEEEECCCCCcceEEEc----CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEe------
Confidence            455555555899999987543333222    2335688999985  33 4455567889888887543211111      


Q ss_pred             cceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeE-EEEECCCcEEEEECCCcceEEEeecccccEEEEEEec
Q 013717          186 DRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLI-YSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA  262 (437)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  262 (437)
                                              ........++++.  +.| ++-...+.|.+.++........+...-.....|++.|
T Consensus        77 ------------------------~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp  132 (628)
T 4a0p_A           77 ------------------------FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDP  132 (628)
T ss_dssp             ------------------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEET
T ss_pred             ------------------------CCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEcc
Confidence                                    0112345677754  444 4444567899999865443332323445678999998


Q ss_pred             -CCeEEEEe--CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCccceEEeee
Q 013717          263 -GGTVYTGS--ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSANHMVVTGA  338 (437)
Q Consensus       263 -~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~  338 (437)
                       .|.|+...  ..+.|...+++...     ...+...-.....|+++++++.|+.+. ..+.|..+|+..... ..+. .
T Consensus       133 ~~G~lY~tD~g~~~~I~r~~~dG~~-----~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~-~  205 (628)
T 4a0p_A          133 AEGFMYWTEWGGKPKIDRAAMDGSE-----RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA-D  205 (628)
T ss_dssp             TTTEEEEEECSSSCEEEEEETTSCS-----CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-E
T ss_pred             CCCeEEEeCCCCCCEEEEEeCCCCc-----eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEee-c
Confidence             55655444  25678877775332     111222445788999999877666654 467899999976543 2222 1


Q ss_pred             ecccccceEEEEeeCCEEEEEe-CCCcEEEeeCCCCC
Q 013717          339 LRGHGKAILCLINVAGLLMSGS-ADRTVRIWQRGSDG  374 (437)
Q Consensus       339 ~~~~~~~i~~~~~~~~~l~~~~-~dg~i~iwd~~~~~  374 (437)
                         .......++..++.|+... ..+.|...|..+++
T Consensus       206 ---~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          206 ---DLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             ---CCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             ---cCCCceEEEEECCEEEEecCCCCEEEEEECCCCC
Confidence               2223456666667555444 47788888876665

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.68  E-value=0.00022  Score=69.54  Aligned_cols=223  Identities=13%  Similarity=0.075  Sum_probs=119.1

Q ss_pred             EEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC--CeEEEE-ecCCeEEEEeCCCC----cccccccccC
Q 013717          110 FLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD--GKIFTA-HQDCKIRVWQLTPT----KHHKLKTTLP  182 (437)
Q Consensus       110 ~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~-~~dg~i~iwd~~~~----~~~~~~~~~~  182 (437)
                      +|+.+....|++.++.+.....+  +    .....+..|+|.+  +.|+.+ ...+.|+.+++...    .....+.   
T Consensus       379 ~ll~~~~~~I~~id~~~~~~~~~--~----~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~---  449 (699)
T 1n7d_A          379 YLFFTNRHEVRKMTLDRSEYTSL--I----PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---  449 (699)
T ss_dssp             CBCCCCTTC-CEECTTSCCEECC--S----CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC---
T ss_pred             eEEecCccceEEEeCCCCcceee--e----ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe---
Confidence            33333334788888877433222  1    1234566788874  335444 45578888888751    1111000   


Q ss_pred             ccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--Ce-EEEEECCCcEEEEECCCcceEEEeecccccEEEEE
Q 013717          183 TVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GL-IYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVA  259 (437)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  259 (437)
                                                 ........|+++.  +. +++-...+.|.++++........+.........|+
T Consensus       450 ---------------------------~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~gia  502 (699)
T 1n7d_A          450 ---------------------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIV  502 (699)
T ss_dssp             ---------------------------SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEE
T ss_pred             ---------------------------CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEE
Confidence                                       0111234566653  33 44444567899999875544333332334567889


Q ss_pred             EecCCe-EEEEe-CC-CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEE-EEeCCCcEEEEECCCCccceEE
Q 013717          260 VSAGGT-VYTGS-AD-RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLF-SGACDRSILVWDREDSANHMVV  335 (437)
Q Consensus       260 ~~~~~~-l~~~~-~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~  335 (437)
                      +.|.+. |+... .. +.|.++++.....  ..  .....-.....|+++|++..|+ +-...+.|.++++.... ...+
T Consensus       503 vDp~~g~ly~td~~~~~~I~~~~~dG~~~--~~--l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~  577 (699)
T 1n7d_A          503 VDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YS--LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTI  577 (699)
T ss_dssp             CCSSSSCCEECCCSSSCCEEBCCSSSCCC--CE--ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEE
T ss_pred             EccCCCcEEEcccCCCCeEEEEeCCCCCe--eE--EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEE
Confidence            998654 44433 22 6788887653221  11  1112234567899999765554 44456789999987532 2222


Q ss_pred             eeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCC
Q 013717          336 TGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       336 ~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~  374 (437)
                      .. ..........+++.++ ++++....+.|..++..+++
T Consensus       578 ~~-~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~  616 (699)
T 1n7d_A          578 LE-DEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS  616 (699)
T ss_dssp             CC-CSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEE
T ss_pred             Ee-cCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCC
Confidence            21 1111122334455556 55555567889999977655

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.57  E-value=0.026  Score=55.70  Aligned_cols=197  Identities=8%  Similarity=0.047  Sum_probs=103.5

Q ss_pred             CCcc-cEEEEEEe-CCe--EEEE-ecCC----eEEEEeCCCC-cccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717          140 SSSG-SVKSVTFC-DGK--IFTA-HQDC----KIRVWQLTPT-KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI  209 (437)
Q Consensus       140 ~h~~-~v~~l~~~-~~~--l~s~-~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (437)
                      +|.. .+....|+ |++  |+.+ ..+|    +|+++|+.++ +....  .+.                           
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~---------------------------  220 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVS---------------------------  220 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEE---------------------------
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--ccc---------------------------
Confidence            3443 78889999 876  4433 3232    5999999987 52110  000                           


Q ss_pred             cCCCcEEEEEeCC--CeEEEEECC-----CcEEEEECCCcce--EEEee-cccccEEEEEEecCCe-EEEEe---CCCeE
Q 013717          210 EHGDAVTGLAVNN--GLIYSVSWD-----KSLKIWRASDLRC--LESIK-AHEDAVNAVAVSAGGT-VYTGS---ADRKI  275 (437)
Q Consensus       210 ~~~~~v~~~~~~~--~~l~~~~~d-----g~i~iwd~~~~~~--~~~~~-~~~~~v~~~~~~~~~~-l~~~~---~dg~v  275 (437)
                         .....+.|++  +.|+....|     ..|.++++.+++.  ...+. ........+.|+|||+ |+...   ....|
T Consensus       221 ---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l  297 (751)
T 2xe4_A          221 ---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEV  297 (751)
T ss_dssp             ---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEE
T ss_pred             ---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceE
Confidence               0123456776  455555544     3688888877642  22222 2234467889999998 55444   23467


Q ss_pred             EEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC----CcEEEEECCCCccceE-EeeeecccccceEEEE
Q 013717          276 RVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD----RSILVWDREDSANHMV-VTGALRGHGKAILCLI  350 (437)
Q Consensus       276 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~-~~~~~~~~~~~i~~~~  350 (437)
                      .++|+......................+.|..++.+++....+    ..|..+|+.++..... +..  ......+..+.
T Consensus       298 ~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~--~~~~~~l~~~~  375 (751)
T 2xe4_A          298 HLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD--HSEDVFMESIA  375 (751)
T ss_dssp             EEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC--CCSSEEEEEEE
T ss_pred             EEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC--CCCCcEEEEEE
Confidence            7888765321110011122233445555554444344444443    3677777764311111 111  11122455667


Q ss_pred             eeCC-EEEEEeCCCc--EEEeeC
Q 013717          351 NVAG-LLMSGSADRT--VRIWQR  370 (437)
Q Consensus       351 ~~~~-~l~~~~~dg~--i~iwd~  370 (437)
                      +.++ ++++...++.  |.++++
T Consensus       376 ~~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          376 VRSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             ECSSEEEEEEEETTEEEEEEEEC
T ss_pred             EECCEEEEEEEeCCEEEEEEEec
Confidence            7766 5566666775  555564

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.53  E-value=0.037  Score=48.07  Aligned_cols=219  Identities=11%  Similarity=0.103  Sum_probs=106.9

Q ss_pred             CeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEec----CC-------eEEEEeCCCCcccccccccCcc
Q 013717          117 HEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQ----DC-------KIRVWQLTPTKHHKLKTTLPTV  184 (437)
Q Consensus       117 d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~----dg-------~i~iwd~~~~~~~~~~~~~~~~  184 (437)
                      ..+.+||..++++... .+..  .....-.+++..++. ++.|+.    ++       .+..||..+.+-... ..++. 
T Consensus        24 ~~~~~yd~~~~~W~~~-~~~~--~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~-   98 (318)
T 2woz_A           24 TAAVAYDPMENECYLT-ALAE--QIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL-PPLPS-   98 (318)
T ss_dssp             SEEEEEETTTTEEEEE-EECT--TSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC-SCBSS-
T ss_pred             cceEEECCCCCceecc-cCCc--cCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC-CCCCc-
Confidence            4678999999887663 2211  111222344444555 666662    12       166778776543222 11110 


Q ss_pred             ccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECC-------CcEEEEECCCcceEEE--eecccccE
Q 013717          185 NDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWD-------KSLKIWRASDLRCLES--IKAHEDAV  255 (437)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~--~~~~~~~v  255 (437)
                                                .......+.+....++.|+.+       ..+.+||..+.+-...  +......-
T Consensus        99 --------------------------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~  152 (318)
T 2woz_A           99 --------------------------ARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH  152 (318)
T ss_dssp             --------------------------CBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC
T ss_pred             --------------------------cccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc
Confidence                                      011112233445666667653       3478889877643322  11111111


Q ss_pred             EEEEEecCCe-EEEEeC------CCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC-----CcEEE
Q 013717          256 NAVAVSAGGT-VYTGSA------DRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD-----RSILV  323 (437)
Q Consensus       256 ~~~~~~~~~~-l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i  323 (437)
                       +++. .+++ ++.|+.      -..+.+||+.++  .+..+..+.........+.+  ++++++.|+.+     ..+.+
T Consensus       153 -~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~  226 (318)
T 2woz_A          153 -NVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKG--DWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEA  226 (318)
T ss_dssp             -EEEE-ETTEEEEECCEESSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEE
T ss_pred             -EEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCC--EEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEE
Confidence             1222 3666 566653      245888888643  23333222211111222222  56777777653     35778


Q ss_pred             EECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCC--------------CcEEEeeCCCCC
Q 013717          324 WDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSAD--------------RTVRIWQRGSDG  374 (437)
Q Consensus       324 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~  374 (437)
                      ||+.+.+  +...............+...+.+++.|+.+              ..+.+||..+.+
T Consensus       227 yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          227 FDLKTNK--WEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             EETTTCC--EEECCCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred             EECCCCe--EEECCCCCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence            9987653  222222222222223344555566777654              357788887644

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.51  E-value=0.023  Score=51.85  Aligned_cols=151  Identities=7%  Similarity=0.026  Sum_probs=88.5

Q ss_pred             cEEEEEeCC----CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCC-----eEEEecCCCCc
Q 013717          214 AVTGLAVNN----GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADR-----KIRVWAKPFNE  284 (437)
Q Consensus       214 ~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~  284 (437)
                      ....+++++    ..|+.+...+.|+.+|..+++..... ........+++++++.|+++...+     .+..++.....
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            345788885    67777766689999999877655443 345568999999999955555422     23333322111


Q ss_pred             ccceeeEEeeCccccEEEEEEcc-CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccce--EEEEeeCCEE-EEEe
Q 013717          285 KRHALIATLEKHKSAVNALALSD-DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI--LCLINVAGLL-MSGS  360 (437)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~l-~~~~  360 (437)
                      ..   ...+. .......++++| +|.+.++-..++.|+.+|..++.....+.. . +.....  .++..++++| ++-.
T Consensus       219 ~~---~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~-~-~~~~~~~~ia~dpdG~~LYvad~  292 (433)
T 4hw6_A          219 TE---RLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM-M-DTKGSNFHIVWHPTGDWAYIIYN  292 (433)
T ss_dssp             CC---EEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE-C-SCCSSCEEEEECTTSSEEEEEET
T ss_pred             ec---ccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec-c-CCCCCcccEEEeCCCCEEEEEeC
Confidence            10   01111 234456788999 676666666778899999876543122211 1 111222  3444445544 4445


Q ss_pred             CCCcEEEeeCC
Q 013717          361 ADRTVRIWQRG  371 (437)
Q Consensus       361 ~dg~i~iwd~~  371 (437)
                      ..+.|+.++..
T Consensus       293 ~~~~I~~~~~d  303 (433)
T 4hw6_A          293 GKHCIYRVDYN  303 (433)
T ss_dssp             TTTEEEEEEBC
T ss_pred             CCCEEEEEeCC
Confidence            56789998865

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.49  E-value=0.05  Score=48.49  Aligned_cols=254  Identities=8%  Similarity=0.111  Sum_probs=152.7

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCC
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNS  196 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (437)
                      .|.|-|+..+.....+.+        .-.+...+|.. +++--...++.++|+++.+..+...                 
T Consensus        49 ~vvIiDl~~~~~~~rrpi--------~AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~-----------------  103 (494)
T 1bpo_A           49 QVVIIDMNDPSNPIRRPI--------SADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHT-----------------  103 (494)
T ss_dssp             EEEEEETTSTTSCEEEEC--------CCSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEE-----------------
T ss_pred             eEEEEECCCCCcceeccc--------ccceeeeCCCCcEEEEecCCeEEEEchHHhhhhccee-----------------
Confidence            788889887532222222        11123344444 4433347899999999887555433                 


Q ss_pred             eeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCc-ceEEEeecc----cccEEEEEEecCCe--EEE
Q 013717          197 YVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDL-RCLESIKAH----EDAVNAVAVSAGGT--VYT  268 (437)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~----~~~v~~~~~~~~~~--l~~  268 (437)
                                    ....|.--.|-. +.|+..+ +..|+.|++... .+...+..|    ...|..-..+++.+  +++
T Consensus       104 --------------~~e~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~  168 (494)
T 1bpo_A          104 --------------MTDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLT  168 (494)
T ss_dssp             --------------CSSCCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEE
T ss_pred             --------------cCCCceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEE
Confidence                          234555666643 6666665 467999999643 455555433    35677777788887  444


Q ss_pred             Ee------CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC---CEEEEEeC---CCcEEEEECCCC---ccce
Q 013717          269 GS------ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG---TVLFSGAC---DRSILVWDREDS---ANHM  333 (437)
Q Consensus       269 ~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~---dg~i~i~d~~~~---~~~~  333 (437)
                      |-      -.|.+.+|..+.+     .-+.+++|......+.+..+.   ++++.+..   .+.++|.++...   ....
T Consensus       169 GI~~~~~~v~G~mQLYS~er~-----~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f  243 (494)
T 1bpo_A          169 GISAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF  243 (494)
T ss_dssp             EEEEETTEEEEEEEEEESTTC-----CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC
T ss_pred             eecccCCcccceEEEeecccc-----ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc
Confidence            43      2478889977643     455677777666555443221   24444443   278999998643   1111


Q ss_pred             --EEee-ee--cccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEE
Q 013717          334 --VVTG-AL--RGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSV  406 (437)
Q Consensus       334 --~~~~-~~--~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l  406 (437)
                        .... .+  .....-..++..+..  .++.-+.-|.|++||++++.   ++..-+-...+|-.-+-....+.     +
T Consensus       244 ~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt---~i~~nrIs~~~iF~t~~~~~~~G-----i  315 (494)
T 1bpo_A          244 PKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT---CIYMNRISGETIFVTAPHEATAG-----I  315 (494)
T ss_dssp             CCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEEETTTTE-----E
T ss_pred             cceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccce---eeeeecccCCceEEecccCCCCc-----E
Confidence              0000 01  112233355555554  88888999999999999988   77666666677766555544433     6


Q ss_pred             EEecCCCcEEEEeeccCC
Q 013717          407 FSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       407 ~s~~~dg~i~iw~~~~~~  424 (437)
                      +.....|.|.--.++...
T Consensus       316 ~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          316 IGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             EEEETTCEEEEEEECTTT
T ss_pred             EEEccCceEEEEEEcccc
Confidence            666688888777776553

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.42  E-value=0.075  Score=48.90  Aligned_cols=244  Identities=10%  Similarity=0.045  Sum_probs=134.1

Q ss_pred             cEEEEEEeCC---eEEEEec-CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEE
Q 013717          144 SVKSVTFCDG---KIFTAHQ-DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA  219 (437)
Q Consensus       144 ~v~~l~~~~~---~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  219 (437)
                      ....|+|+|.   .|+.+.. .+.|++.|++++........-.                           ........++
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~---------------------------~~~~~p~~ia  192 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT---------------------------IPTNRIRSIA  192 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT---------------------------SSCSBEEEEE
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc---------------------------cccCCCcEEE
Confidence            5678999973   2555544 4678888888765433222100                           0223578888


Q ss_pred             e-------CC--CeEEEEECCC-------cEEEEECCC-cceE-----EEeecccccEEEEEEecC-Ce-EEEEeCCCeE
Q 013717          220 V-------NN--GLIYSVSWDK-------SLKIWRASD-LRCL-----ESIKAHEDAVNAVAVSAG-GT-VYTGSADRKI  275 (437)
Q Consensus       220 ~-------~~--~~l~~~~~dg-------~i~iwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~-~~-l~~~~~dg~v  275 (437)
                      |       ++  +.|+++...+       .|.+++... ++..     ..+.. -.....++++|+ +. +++-..++.|
T Consensus       193 ~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V  271 (496)
T 3kya_A          193 FNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQV  271 (496)
T ss_dssp             ECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEE
T ss_pred             EeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEE
Confidence            8       66  5566665554       266665333 2221     22222 224457888995 45 5556678889


Q ss_pred             EEecCC-------CCcc------c----ceeeEEeeCccccEEEEEEccCCCEEEEE-eCCCcEEEEECCCCccc----e
Q 013717          276 RVWAKP-------FNEK------R----HALIATLEKHKSAVNALALSDDGTVLFSG-ACDRSILVWDREDSANH----M  333 (437)
Q Consensus       276 ~iwd~~-------~~~~------~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~----~  333 (437)
                      ..+|+.       ....      .    ...+... +.......|+|+|+|++|+.+ .....|+.++.......    .
T Consensus       272 ~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~  350 (496)
T 3kya_A          272 FRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPY  350 (496)
T ss_dssp             EEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCE
T ss_pred             EEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccE
Confidence            999886       2221      0    0112112 223456899999999965554 45678888665432111    1


Q ss_pred             EEeeee--cccc---------cceE-EEEe---------eCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecC--------
Q 013717          334 VVTGAL--RGHG---------KAIL-CLIN---------VAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEG--------  384 (437)
Q Consensus       334 ~~~~~~--~~~~---------~~i~-~~~~---------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------  384 (437)
                      .+....  .+..         .... .+..         .++++++=...+.|+.++. .+.    +.++.+        
T Consensus       351 ~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~----v~TiaG~g~~~~~~  425 (496)
T 3kya_A          351 NFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI----VSTYAGRGASTSLA  425 (496)
T ss_dssp             EEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB----EEEEEESCTTHHHH
T ss_pred             EecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC----EEEEeccccccccc
Confidence            222210  1110         0112 2222         2345555566788999984 332    222221        


Q ss_pred             ----------------CCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          385 ----------------HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       385 ----------------h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                                      .-..-..|++.++.+    .++++=..+.+||.++++....
T Consensus       426 ~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g----~lyVaD~~N~rIrki~~~~~~~  478 (496)
T 3kya_A          426 DGNQWGTDDGDLREVARFRDVSGLVYDDVKE----MFYVHDQVGHTIRTISMEQEEN  478 (496)
T ss_dssp             HSCSCCCCCEETTTTCCCSSEEEEEEETTTT----EEEEEETTTTEEEEEEECCCC-
T ss_pred             CccccccCCCCchhhhhcCCCcEEEEECCCC----EEEEEeCCCCEEEEEECCCCcc
Confidence                            112467899998622    3666666778999999987654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.42  E-value=0.041  Score=45.82  Aligned_cols=203  Identities=12%  Similarity=0.144  Sum_probs=119.8

Q ss_pred             ec-CccCCeEEEEee--CCEEEE-EecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-E-EEEecCCeEEE
Q 013717           94 QL-GHKLPIGCIAVH--HNFLYA-ASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-I-FTAHQDCKIRV  166 (437)
Q Consensus        94 ~~-~h~~~V~~l~~~--~~~l~s-~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l-~s~~~dg~i~i  166 (437)
                      .+ |-.+.+..++++  ++.|++ ...+ .|...|.. ++......+   . -......|++.+++ + ++.-.++.+.+
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l---~-g~~D~EGIa~~~~g~~~vs~E~~~~l~~   95 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL---D-FVKDLETIEYIGDNQFVISDERDYAIYV   95 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC---S-SCSSEEEEEECSTTEEEEEETTTTEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec---C-CCCChHHeEEeCCCEEEEEECCCCcEEE
Confidence            44 666789999999  555555 5555 89999998 433222222   1 22567788887554 4 44446778989


Q ss_pred             EeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCC---
Q 013717          167 WQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASD---  241 (437)
Q Consensus       167 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~---  241 (437)
                      +++..............                    . ............+++++  +.|+++.+.....+|.+..   
T Consensus        96 ~~v~~~~~i~~~~~~~~--------------------~-~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~  154 (255)
T 3qqz_A           96 ISLTPNSEVKILKKIKI--------------------P-LQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLS  154 (255)
T ss_dssp             EEECTTCCEEEEEEEEC--------------------C-CSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTC
T ss_pred             EEcCCCCeeeeeeeecc--------------------c-cccccccCCcceEEEeCCCCEEEEEECcCCceEEEEccccc
Confidence            88875542111110000                    0 00012455678999988  5777777666656665531   


Q ss_pred             cceEEEee-------cccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeC-c------cccEEEEEE
Q 013717          242 LRCLESIK-------AHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEK-H------KSAVNALAL  305 (437)
Q Consensus       242 ~~~~~~~~-------~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~------~~~i~~~~~  305 (437)
                      ...+..+.       .+...+.+++++|...  ++....++.|.++|.....   .....+.. .      -.....|+|
T Consensus       155 ~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~---~~~~~L~~g~~~l~~~~~qpEGia~  231 (255)
T 3qqz_A          155 SNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEV---IGEMSLTKGSRGLSHNIKQAEGVAM  231 (255)
T ss_dssp             SSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCE---EEEEECSTTGGGCSSCCCSEEEEEE
T ss_pred             CCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCE---EEEEEcCCccCCcccccCCCCeeEE
Confidence            11122221       1234578999998654  6666778889999875321   12222221 1      136789999


Q ss_pred             ccCCCEEEEEeCCCcEEEEEC
Q 013717          306 SDDGTVLFSGACDRSILVWDR  326 (437)
Q Consensus       306 ~~~~~~l~~~~~dg~i~i~d~  326 (437)
                      .++|++.++ ++.+.+++|.-
T Consensus       232 d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          232 DASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             CTTCCEEEE-ETTTEEEEEEC
T ss_pred             CCCCCEEEE-cCCceEEEEEe
Confidence            999985555 67676776654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.37  E-value=0.035  Score=47.96  Aligned_cols=188  Identities=12%  Similarity=0.171  Sum_probs=93.4

Q ss_pred             eCCCeEEEEEC----C-----CcEEEEECCCcceEEE--eecccccEEEEEEecCCe-EEEEeCC-----CeEEEecCCC
Q 013717          220 VNNGLIYSVSW----D-----KSLKIWRASDLRCLES--IKAHEDAVNAVAVSAGGT-VYTGSAD-----RKIRVWAKPF  282 (437)
Q Consensus       220 ~~~~~l~~~~~----d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~-l~~~~~d-----g~v~iwd~~~  282 (437)
                      +...+++.|+.    +     ..+.+||..+.+-...  +.........+.+  +++ ++.|+.+     ..+.+||..+
T Consensus        69 ~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~  146 (308)
T 1zgk_A           69 VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPER  146 (308)
T ss_dssp             ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTT
T ss_pred             ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCC
Confidence            34455555554    2     4688899877643222  1111112222222  566 5666543     4577888754


Q ss_pred             CcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC-----CcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEE
Q 013717          283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD-----RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLM  357 (437)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~  357 (437)
                      +.  +..+..+......-..+.+  ++++++.|+.+     ..+.+||+.+.+  +..............++...+.+++
T Consensus       147 ~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv  220 (308)
T 1zgk_A          147 DE--WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE--WRMITAMNTIRSGAGVCVLHNCIYA  220 (308)
T ss_dssp             TE--EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEETTEEEE
T ss_pred             Ce--EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe--EeeCCCCCCccccceEEEECCEEEE
Confidence            32  2222222211122222222  56677777654     458899987653  2222222222222233444555777


Q ss_pred             EEeCC-----CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC-----CcEEEEeeccC
Q 013717          358 SGSAD-----RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD-----GEIRAWQVSVS  423 (437)
Q Consensus       358 ~~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~  423 (437)
                      .|+.+     ..+.+||+.+.+ +..+..+......- +++.. ++     ++++.|+.+     ..+.+||+++.
T Consensus       221 ~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r~~~-~~~~~-~~-----~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          221 AGGYDGQDQLNSVERYDVETET-WTFVAPMKHRRSAL-GITVH-QG-----RIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             ECCBCSSSBCCCEEEEETTTTE-EEECCCCSSCCBSC-EEEEE-TT-----EEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             EeCCCCCCccceEEEEeCCCCc-EEECCCCCCCccce-EEEEE-CC-----EEEEEcCcCCCcccceEEEEcCCCC
Confidence            77664     468999998754 44443332222122 22222 22     377777754     34777877654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.34  E-value=0.00093  Score=65.11  Aligned_cols=195  Identities=11%  Similarity=-0.015  Sum_probs=105.6

Q ss_pred             cEEEEEeCC--CeEEEEE-CCCcEEEEECCC----cceEEEeecccccEEEEEEecC-Ce-EEEEeCCCeEEEecCCCCc
Q 013717          214 AVTGLAVNN--GLIYSVS-WDKSLKIWRASD----LRCLESIKAHEDAVNAVAVSAG-GT-VYTGSADRKIRVWAKPFNE  284 (437)
Q Consensus       214 ~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~-l~~~~~dg~v~iwd~~~~~  284 (437)
                      .+.+++|++  +.|+.+. ..+.|+.+++..    ......+.........|++.+. +. +++-...+.|.++++....
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence            445677765  5555554 457888888865    2222222111223456788754 45 4554567889999876432


Q ss_pred             ccceeeEEeeCccccEEEEEEccCCCEEEEEeC-C-CcEEEEECCCCccceEEeeeecccccceEEEEee--CC-EEEEE
Q 013717          285 KRHALIATLEKHKSAVNALALSDDGTVLFSGAC-D-RSILVWDREDSANHMVVTGALRGHGKAILCLINV--AG-LLMSG  359 (437)
Q Consensus       285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~  359 (437)
                          ....+.........|+++|.+.+|+.+.. . +.|.++++...... .+..   ........++++  +. ++++-
T Consensus       487 ----~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~l~~---~~l~~PnGlavd~~~~~LY~aD  558 (699)
T 1n7d_A          487 ----RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVT---ENIQWPNGITLDLLSGRLYWVD  558 (699)
T ss_dssp             ----EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-EESC---SSCSSCCCEEECTTTCCEEEEE
T ss_pred             ----eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-EEEe---CCCCCccEEEEeccCCEEEEEe
Confidence                11122222345678899996655555443 2 67888887643222 1211   111223445554  34 55555


Q ss_pred             eCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          360 SADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       360 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      ...+.|..+++..... ..+...........+|++..+      .++++....+.|..++..++
T Consensus       559 ~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~------~lywtd~~~~~V~~~d~~~G  615 (699)
T 1n7d_A          559 SKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED------KVFWTDIINEAIFSANRLTG  615 (699)
T ss_dssp             TTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT------EEEEECSTTTCEEEEETTTE
T ss_pred             cCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC------EEEEEeCCCCeEEEEEccCC
Confidence            5677899999875432 122111112223445566543      26777777889999886544

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.29  E-value=0.025  Score=51.52  Aligned_cols=154  Identities=8%  Similarity=-0.019  Sum_probs=90.9

Q ss_pred             cEEEEEEecC--CeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-CC----cEEEEEC
Q 013717          254 AVNAVAVSAG--GTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-DR----SILVWDR  326 (437)
Q Consensus       254 ~v~~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg----~i~i~d~  326 (437)
                      ....|+++|+  +.|+++...+.|+.+|+....     +..+.........++|+++|++|+++.. ++    .+.+++.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-----v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-----VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE-----EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE-----EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence            4567899973  456666666889999876432     2233334567889999999996666654 22    3444453


Q ss_pred             CCCccceEEeeeecccccceEEEEee---CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCce
Q 013717          327 EDSANHMVVTGALRGHGKAILCLINV---AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGV  403 (437)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~  403 (437)
                      ............    ......++.+   +.++++-..++.|+.|+...+.. ..+.... ....-..|+|+|++..   
T Consensus       213 ~g~~~~~~~l~~----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~-~~~~~~~-~~~~P~gia~~pdG~~---  283 (430)
T 3tc9_A          213 ESGFKVITELTK----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET-TPLFTIQ-DSGWEFHIQFHPSGNY---  283 (430)
T ss_dssp             GGTSCSEEEEEE----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE-EEEEECS-SSSCCEEEEECTTSSE---
T ss_pred             CCceeeeeeecc----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE-EEEEEcC-CCCcceeEEEcCCCCE---
Confidence            322111111111    1112333344   33555555678899999886431 1122222 2245678999999852   


Q ss_pred             EEEEEecCCCcEEEEeecc
Q 013717          404 VSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       404 ~~l~s~~~dg~i~iw~~~~  422 (437)
                       ++++-...+.|..++.+.
T Consensus       284 -lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          284 -AYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             -EEEEETTTTEEEEEEEET
T ss_pred             -EEEEECCCCEEEEEeCCc
Confidence             566667788999988764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.21  E-value=0.2  Score=49.45  Aligned_cols=273  Identities=13%  Similarity=0.204  Sum_probs=152.0

Q ss_pred             cCCeEEEEee-CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccc
Q 013717           98 KLPIGCIAVH-HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHK  176 (437)
Q Consensus        98 ~~~V~~l~~~-~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~  176 (437)
                      ...|.++... ...|..|+.+-+..||..+.....  ..   ......|.++...++.|..++.+ -|..+|..+++...
T Consensus        62 ~~~i~~i~~d~~g~lWigT~~Gl~~yd~~~~~f~~--~~---~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~  135 (758)
T 3ott_A           62 NTRIYCGVIIDNTYLYMGTDNGILVYNYRADRYEQ--PE---TDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLTS  135 (758)
T ss_dssp             SSCEEEEEEETTTEEEEEETTEEEEEETTTTEECC--CS---CCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEEE
T ss_pred             CceEEEEEEcCCCcEEEEeCCCeEEEeCCCCEEEC--cc---cCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEEE
Confidence            4568998877 677888876678899998754332  11   11234577776666667777766 57788877654221


Q ss_pred             cccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeec-----
Q 013717          177 LKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKA-----  250 (437)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----  250 (437)
                      ......                          ......|.++..+. +.+..|..+ -|..+|..+++.......     
T Consensus       136 ~~~~~~--------------------------~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~  188 (758)
T 3ott_A          136 FDTRRN--------------------------GLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQ  188 (758)
T ss_dssp             ECHHHH--------------------------CCSCSCEEEEEECTTCCEEEEETT-EEEEEETTTTEEEEECCCCCTTC
T ss_pred             eccCCC--------------------------CcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCceEEecCCCcccc
Confidence            100000                          00234688888775 667777765 477888776653321111     


Q ss_pred             ccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 013717          251 HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDS  329 (437)
Q Consensus       251 ~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (437)
                      ....|.++...+++. |..|+. +-|..+|.....  ......+  ....|.++....+|.+.+ |+.+ -+.+++..+.
T Consensus       189 ~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~--~~~~~~l--~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~  261 (758)
T 3ott_A          189 SNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ--IKQTEAF--HNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTT  261 (758)
T ss_dssp             SSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE--EEEEEEE--EEEEEEEEEECTTCCEEE-EETT-EEEEECCTTS
T ss_pred             ccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe--EEeccCC--CCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCC
Confidence            123488888877654 677774 467788765332  1111112  234688888888886554 4444 4888887654


Q ss_pred             ccceEEeeee----cccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeee--e--cCCCCCeeEEEEEccCCC
Q 013717          330 ANHMVVTGAL----RGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV--L--EGHTKPVKSLTAVTEEGQ  400 (437)
Q Consensus       330 ~~~~~~~~~~----~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~--~--~~h~~~v~~l~~~~~~~~  400 (437)
                      ... .+....    .-....|.++..+.+ .|..|+..| +.++....  .+.....  .  ......|.++....++  
T Consensus       262 ~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g--  335 (758)
T 3ott_A          262 PLQ-HIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKG--  335 (758)
T ss_dssp             CCE-EECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTC--
T ss_pred             cEE-EEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCC--
Confidence            321 111110    012235778777654 566677667 55553322  1111111  0  0123467787665555  


Q ss_pred             CceEEEEEecCCCcEEEEeec
Q 013717          401 NGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       401 ~~~~~l~s~~~dg~i~iw~~~  421 (437)
                          .|..|+.+| +..++..
T Consensus       336 ----~lWiGt~~G-l~~~~~~  351 (758)
T 3ott_A          336 ----FYWFGGANG-LIRFTDP  351 (758)
T ss_dssp             ----CEEEEETTE-EEEESCT
T ss_pred             ----CEEEeeCCc-ceeeccc
Confidence                255555554 5555443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.20  E-value=0.11  Score=46.33  Aligned_cols=181  Identities=13%  Similarity=0.161  Sum_probs=120.8

Q ss_pred             CCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCc----cccEEEEEE
Q 013717          230 WDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKH----KSAVNALAL  305 (437)
Q Consensus       230 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~i~~~~~  305 (437)
                      ...++.|+|+++.+.+..+.-. ..|.-=.|-.+..|+..+ +..|.-|++..+.   .+.+.+..|    ...|..-..
T Consensus        84 ag~~lQiFnle~K~klks~~~~-e~VvfWkWis~~~l~lVT-~taVyHWsi~~~s---~P~kvFdR~~~L~~~QIInY~~  158 (494)
T 1bpo_A           84 AGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVT-DNAVYHWSMEGES---QPVKMFDRHSSLAGCQIINYRT  158 (494)
T ss_dssp             ETTEEEEEETTTTEEEEEEECS-SCCCEEEEEETTEEEEEC-SSEEEEEESSSSC---CCEEEEECCGGGTTCEEEEEEE
T ss_pred             cCCeEEEEchHHhhhhcceecC-CCceEEEecCCCeEEEEc-CCeeEEecccCCC---CchhheecchhcccceEEEEEE
Confidence            3789999999999888888744 456666776666655544 4689999987533   345555544    357888888


Q ss_pred             ccCCCEEEEEe-------CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-----EEEEEeCC---CcEEEeeC
Q 013717          306 SDDGTVLFSGA-------CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-----LLMSGSAD---RTVRIWQR  370 (437)
Q Consensus       306 ~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~l~~~~~d---g~i~iwd~  370 (437)
                      +++.++++..+       -.|.+.+|..+..     ..+.+.||...-..+...++     +++.+...   +.++|-++
T Consensus       159 d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-----~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei  233 (494)
T 1bpo_A          159 DAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEV  233 (494)
T ss_dssp             CTTSSEEEEEEEEEETTEEEEEEEEEESTTC-----CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEEC
T ss_pred             CCCCCeEEEEeecccCCcccceEEEeecccc-----ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEc
Confidence            99999877543       2578899998754     34456788777777766654     44444442   78999998


Q ss_pred             CCC---C-Ce--eeeeee---cCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          371 GSD---G-RF--GCLAVL---EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       371 ~~~---~-~~--~~~~~~---~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      ...   . .+  +.+..+   ..-.+--.++..++..+     +++-...-|.|.+||++++..
T Consensus       234 ~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-----viyviTK~G~i~lyDleTgt~  292 (494)
T 1bpo_A          234 GTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-----VVFLITKYGYIHLYDLETGTC  292 (494)
T ss_dssp             SCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-----EEEEEETTSEEEEEETTTCCE
T ss_pred             CCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-----EEEEEecCceEEEEeccccee
Confidence            653   1 11  111111   11233445777777664     677778889999999999864

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.11  E-value=0.11  Score=44.69  Aligned_cols=156  Identities=9%  Similarity=0.117  Sum_probs=96.8

Q ss_pred             cEEEEEeCC--CeEEEEE-CCCcEEEEECCCcceEEEeecc-------cccEEEEEE---ecCCeEEEEeC---------
Q 013717          214 AVTGLAVNN--GLIYSVS-WDKSLKIWRASDLRCLESIKAH-------EDAVNAVAV---SAGGTVYTGSA---------  271 (437)
Q Consensus       214 ~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~---~~~~~l~~~~~---------  271 (437)
                      .-.++.|++  ..++.++ ..++|..||...+.........       ...+..|.+   .|+++|++...         
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence            344678876  6667666 7899999998765443332111       114688999   68888443322         


Q ss_pred             -----CCeEEEecCC---CCcccceeeEEeeC-----------ccccEEEEEEccCCCEEEEEeCC-CcEEEEECCCCcc
Q 013717          272 -----DRKIRVWAKP---FNEKRHALIATLEK-----------HKSAVNALALSDDGTVLFSGACD-RSILVWDREDSAN  331 (437)
Q Consensus       272 -----dg~v~iwd~~---~~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~  331 (437)
                           +..|..||+.   ++...+  ...+..           .......++..++|+..++++.. +.|..++.... .
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~--~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~  170 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVW--SVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-T  170 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSE--EEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-C
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEE--EecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-E
Confidence                 6789999987   333211  112211           11358899999999999988888 88888877643 2


Q ss_pred             ceEEeeee--cccccceEEEEee--CCEEEEEeCCCcEEEeeCCC
Q 013717          332 HMVVTGAL--RGHGKAILCLINV--AGLLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       332 ~~~~~~~~--~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~  372 (437)
                      ...+....  .........+.++  ++.|++....|.|..+|+..
T Consensus       171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            22121111  1111223455555  55666666699999999885

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.07  E-value=0.048  Score=48.54  Aligned_cols=144  Identities=15%  Similarity=0.108  Sum_probs=89.8

Q ss_pred             CeEEEEECCCcEEEEECCCcceEEEeecc----cccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccc--------eee
Q 013717          223 GLIYSVSWDKSLKIWRASDLRCLESIKAH----EDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRH--------ALI  290 (437)
Q Consensus       223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~--------~~~  290 (437)
                      ..++.+ .++.||.-++.....-+.++..    -..|..+..+|+|.+++-..+..|.|..+.......        ...
T Consensus        33 t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~  111 (452)
T 3pbp_A           33 TRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQI  111 (452)
T ss_dssp             TEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEE
T ss_pred             CEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccce
Confidence            344433 3477888787644444444422    235788999999996666677899999887322110        112


Q ss_pred             EEeeC------ccccEEEEEEccC---CCEEEEEeCCCcEEEEECCCCccceE-Eeee-----ecccccceEEEEeeCC-
Q 013717          291 ATLEK------HKSAVNALALSDD---GTVLFSGACDRSILVWDREDSANHMV-VTGA-----LRGHGKAILCLINVAG-  354 (437)
Q Consensus       291 ~~~~~------~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~-----~~~~~~~i~~~~~~~~-  354 (437)
                      +.+.-      ...+|..+.|+|-   +..|++-..|+.|++||+........ +...     .......+.+++|.++ 
T Consensus       112 ~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~  191 (452)
T 3pbp_A          112 FHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDG  191 (452)
T ss_dssp             EEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTS
T ss_pred             eEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCC
Confidence            22322      2467999999994   56899999999999999986322211 2111     1122356778888766 


Q ss_pred             ---EEEEEeCCCcEEE
Q 013717          355 ---LLMSGSADRTVRI  367 (437)
Q Consensus       355 ---~l~~~~~dg~i~i  367 (437)
                         |+++.+..|-|+-
T Consensus       192 lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          192 LTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             SCEEEEECTTSCEEEE
T ss_pred             cEEEEEecCCCCCEEE
Confidence               4555557787764

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.05  E-value=0.065  Score=47.07  Aligned_cols=158  Identities=10%  Similarity=0.106  Sum_probs=89.3

Q ss_pred             cEEEEEEecCCeEEEEe-------------CCCeEEEecCCCCcccceeeEEeeC-----ccccEEEEEEcc--CCC-EE
Q 013717          254 AVNAVAVSAGGTVYTGS-------------ADRKIRVWAKPFNEKRHALIATLEK-----HKSAVNALALSD--DGT-VL  312 (437)
Q Consensus       254 ~v~~~~~~~~~~l~~~~-------------~dg~v~iwd~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~--~~~-~l  312 (437)
                      ....+++.|+|.+++++             .+|.|.++|........+.+. +.+     ..-....+.+.+  +|. +|
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~-~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELE-IIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECE-EECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEE-ccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            45566677888755554             689999999864322222222 222     234677788766  454 34


Q ss_pred             EEE-eC--CCcEEEEECCCCccceEEeeeecccc-cceEEEEeeC--CEEEEEe-----------------CCCcEEEee
Q 013717          313 FSG-AC--DRSILVWDREDSANHMVVTGALRGHG-KAILCLINVA--GLLMSGS-----------------ADRTVRIWQ  369 (437)
Q Consensus       313 ~~~-~~--dg~i~i~d~~~~~~~~~~~~~~~~~~-~~i~~~~~~~--~~l~~~~-----------------~dg~i~iwd  369 (437)
                      +++ ..  +.+|.+|++........+...+.+.. .....+..++  .+.++..                 ..|.|..+|
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            444 33  46788888766544444554444322 2335555443  3555433                 123444444


Q ss_pred             CCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717          370 RGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       370 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                      .  ++    +..+...-..-+.|+|+|++..    ++++-+..+.|..|+++.
T Consensus       210 ~--~~----~~~~~~~l~~pNGia~spDg~~----lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          210 P--ND----VRVVAEGFDFANGINISPDGKY----VYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             T--TC----CEEEEEEESSEEEEEECTTSSE----EEEEEGGGTEEEEEEECT
T ss_pred             C--Ce----EEEeecCCcccCcceECCCCCE----EEEEeCCCCeEEEEEECC
Confidence            3  22    1222222345789999999863    666666788999999874

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.05  E-value=0.13  Score=44.48  Aligned_cols=174  Identities=6%  Similarity=0.119  Sum_probs=84.1

Q ss_pred             EEEEECCCcceEEE--eecccccEEEEEEecCCe-EEEEeCC-------CeEEEecCCCCcccceeeEEeeCccccEEEE
Q 013717          234 LKIWRASDLRCLES--IKAHEDAVNAVAVSAGGT-VYTGSAD-------RKIRVWAKPFNEKRHALIATLEKHKSAVNAL  303 (437)
Q Consensus       234 i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~-l~~~~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~  303 (437)
                      +..||..+.+-...  +....... +++.. +++ ++.|+.+       ..+.+||..++  .+..+..+......- ++
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~-~~  154 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSARCLF-GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAA--KWSEVKNLPIKVYGH-NV  154 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCBCSC-EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTT--EEEEECCCSSCEESC-EE
T ss_pred             EEEEeCCCCcEEECCCCCcccccc-ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCC--CEeECCCCCCccccc-EE
Confidence            77888877643322  11111111 22222 566 6666653       34777877543  233322221111111 12


Q ss_pred             EEccCCCEEEEEeC------CCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCC-----CcEEEeeCCC
Q 013717          304 ALSDDGTVLFSGAC------DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSAD-----RTVRIWQRGS  372 (437)
Q Consensus       304 ~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d-----g~i~iwd~~~  372 (437)
                      +. .++++++.|+.      -..+.+||+.+.+  +..............+....+.+++.|+.+     ..+.+||..+
T Consensus       155 ~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~  231 (318)
T 2woz_A          155 IS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD--WKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKT  231 (318)
T ss_dssp             EE-ETTEEEEECCEESSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred             EE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE--EEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCC
Confidence            22 36667777764      2358999998753  222222221122223344455566666653     2477899887


Q ss_pred             CCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC--------------CcEEEEeeccC
Q 013717          373 DGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD--------------GEIRAWQVSVS  423 (437)
Q Consensus       373 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d--------------g~i~iw~~~~~  423 (437)
                      .+ +..+..+......- +++.. ++     ++++.||.+              ..+.+||+++.
T Consensus       232 ~~-W~~~~~~p~~r~~~-~~~~~-~~-----~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  288 (318)
T 2woz_A          232 NK-WEVMTEFPQERSSI-SLVSL-AG-----SLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK  288 (318)
T ss_dssp             CC-EEECCCCSSCCBSC-EEEEE-TT-----EEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred             Ce-EEECCCCCCcccce-EEEEE-CC-----EEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence            54 44444333222222 22222 22     367777754              34677776653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.04  E-value=0.13  Score=44.40  Aligned_cols=185  Identities=12%  Similarity=0.158  Sum_probs=96.0

Q ss_pred             CCEEEEEec--------C----eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecC--------CeEEE
Q 013717          108 HNFLYAASS--------H----EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQD--------CKIRV  166 (437)
Q Consensus       108 ~~~l~s~~~--------d----~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~d--------g~i~i  166 (437)
                      +..++.|+.        .    .+.+||..++++..+..+..    ...-.+++..++. ++.|+.+        ..+.+
T Consensus        46 ~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~----~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~  121 (315)
T 4asc_A           46 NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPS----PRCLFGLGEALNSIYVVGGREIKDGERCLDSVMC  121 (315)
T ss_dssp             CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSS----CEESCEEEEETTEEEEECCEESSTTCCBCCCEEE
T ss_pred             CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCc----chhceeEEEECCEEEEEeCCcCCCCCcccceEEE
Confidence            777777773        1    28889999988877765521    1111233334555 5566532        45888


Q ss_pred             EeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEEC------CCcEEEEECC
Q 013717          167 WQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSW------DKSLKIWRAS  240 (437)
Q Consensus       167 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~------dg~i~iwd~~  240 (437)
                      ||..+.+-.. ...++.                           .......+.+....++.|+.      -..+.+||..
T Consensus       122 ~d~~~~~W~~-~~~~p~---------------------------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~  173 (315)
T 4asc_A          122 YDRLSFKWGE-SDPLPY---------------------------VVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPK  173 (315)
T ss_dssp             EETTTTEEEE-CCCCSS---------------------------CCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETT
T ss_pred             ECCCCCcEeE-CCCCCC---------------------------cccceeEEEECCEEEEEeCCCCCCcccceEEEEeCC
Confidence            8887764322 111111                           11112233344466666665      2468899988


Q ss_pred             CcceEEE--eecccccEEEEEEecCCe-EEEEeCCC-----eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEE
Q 013717          241 DLRCLES--IKAHEDAVNAVAVSAGGT-VYTGSADR-----KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVL  312 (437)
Q Consensus       241 ~~~~~~~--~~~~~~~v~~~~~~~~~~-l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  312 (437)
                      +.+-...  +........++ .. +++ ++.|+.++     .+.+||+.++  .+..+..+.........+.+  +++++
T Consensus       174 ~~~W~~~~~~p~~r~~~~~~-~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~l~  247 (315)
T 4asc_A          174 KFEWKELAPMQTARSLFGAT-VH-DGRIIVAAGVTDTGLTSSAEVYSITDN--KWAPFEAFPQERSSLSLVSL--VGTLY  247 (315)
T ss_dssp             TTEEEECCCCSSCCBSCEEE-EE-TTEEEEEEEECSSSEEEEEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEE
T ss_pred             CCeEEECCCCCCchhceEEE-EE-CCEEEEEeccCCCCccceEEEEECCCC--eEEECCCCCCcccceeEEEE--CCEEE
Confidence            7643221  11111112222 22 566 67776654     5778887543  33333322211222222222  56777


Q ss_pred             EEEeCCC--------------cEEEEECCCCc
Q 013717          313 FSGACDR--------------SILVWDREDSA  330 (437)
Q Consensus       313 ~~~~~dg--------------~i~i~d~~~~~  330 (437)
                      +.|+.++              .+.+||+++.+
T Consensus       248 v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          248 AIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             EECCccccCcCCccccccccCcEEEecCCCCh
Confidence            7776542              47788887653

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.04  E-value=0.15  Score=44.97  Aligned_cols=142  Identities=9%  Similarity=-0.015  Sum_probs=66.7

Q ss_pred             CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC------CCcEEEEECCCCccceEEeeeecccc--c
Q 013717          273 RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC------DRSILVWDREDSANHMVVTGALRGHG--K  344 (437)
Q Consensus       273 g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~--~  344 (437)
                      ..+.+||..++  .+..+..+......-.+++.. ++++++.|+.      ...+.+||+......+..........  .
T Consensus       168 ~~v~~yd~~~~--~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~  244 (357)
T 2uvk_A          168 KFLLSFDPSTQ--QWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA  244 (357)
T ss_dssp             CEEEEEETTTT--EEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCB
T ss_pred             ccEEEEeCCCC--cEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccc
Confidence            57888887543  344443332111110222222 5666666654      24577788733333333332221111  1


Q ss_pred             ceEEEEeeCCEEEEEeCC----------------------CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCc
Q 013717          345 AILCLINVAGLLMSGSAD----------------------RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNG  402 (437)
Q Consensus       345 ~i~~~~~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~  402 (437)
                      ...+....+.+++.|+.+                      ..+.+||..+.+ +..+..+......-.++  ..++    
T Consensus       245 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~--~~~~----  317 (357)
T 2uvk_A          245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK-WDKSGELSQGRAYGVSL--PWNN----  317 (357)
T ss_dssp             SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCCBSSEEE--EETT----
T ss_pred             cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc-eeeCCCCCCCcccceeE--EeCC----
Confidence            122444555566667632                      257889988654 55555544333222222  2233    


Q ss_pred             eEEEEEecCCC------cEEEEeeccCCC
Q 013717          403 VVSVFSGSLDG------EIRAWQVSVSCP  425 (437)
Q Consensus       403 ~~~l~s~~~dg------~i~iw~~~~~~~  425 (437)
                       ++++.||.++      .|.+++++.++-
T Consensus       318 -~i~v~GG~~~~~~~~~~v~~l~~~~~~~  345 (357)
T 2uvk_A          318 -SLLIIGGETAGGKAVTDSVLITVKDNKV  345 (357)
T ss_dssp             -EEEEEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred             -EEEEEeeeCCCCCEeeeEEEEEEcCcEe
Confidence             3777787653      355557776653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.03  E-value=0.15  Score=44.93  Aligned_cols=236  Identities=13%  Similarity=0.076  Sum_probs=117.7

Q ss_pred             ccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717          143 GSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN  221 (437)
Q Consensus       143 ~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  221 (437)
                      .....|+|.++. ++.+..+|.|.+++  +++. ..+..++                        ++.........|+++
T Consensus        31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~-~~~~~~~------------------------v~~~g~~~p~gia~~   83 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRL-STYAELS------------------------VYHRGESGLLGLALH   83 (352)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEEE--TTEE-EEEEECC------------------------CCCSTTCSEEEEEEC
T ss_pred             CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCc-cEeecce------------------------EeecCCCCceeEEEC
Confidence            356789999776 77778889999998  3331 1111110                        011123467888998


Q ss_pred             CC-----eEEEEECC------CcEEEEECCCcc-----eE-EEee---cccccEEEEEEecCCeEEEEeC----------
Q 013717          222 NG-----LIYSVSWD------KSLKIWRASDLR-----CL-ESIK---AHEDAVNAVAVSAGGTVYTGSA----------  271 (437)
Q Consensus       222 ~~-----~l~~~~~d------g~i~iwd~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~l~~~~~----------  271 (437)
                      |+     .|+.+...      +.|..++....+     .+ ..+.   ........++|.|+|.|..+..          
T Consensus        84 pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d  163 (352)
T 2ism_A           84 PRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQD  163 (352)
T ss_dssp             TTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGC
T ss_pred             CCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccC
Confidence            74     66665542      568888876432     11 1122   1112346899999999555432          


Q ss_pred             ----CCeEEEecCCCCc-----------ccceeeEEeeCccccEEEEEEcc-CCCEEEEEeCCCcE------EEEECCCC
Q 013717          272 ----DRKIRVWAKPFNE-----------KRHALIATLEKHKSAVNALALSD-DGTVLFSGACDRSI------LVWDREDS  329 (437)
Q Consensus       272 ----dg~v~iwd~~~~~-----------~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i------~i~d~~~~  329 (437)
                          .|.|.-++.....           ...+..  ..++ .....++|+| +|+++++-...+.+      .|.-+..+
T Consensus       164 ~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~--a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G  240 (352)
T 2ism_A          164 LASLGGKILRLTPEGEPAPGNPFLGRRGARPEVY--SLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPG  240 (352)
T ss_dssp             TTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEE--EECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTT
T ss_pred             CCCCceEEEEEcCCCCCCCCCcccCCCCCCccEE--EEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccC
Confidence                2566666654210           001111  1122 3467889999 66655543333321      12222222


Q ss_pred             ccc--------------eEEeeeecccccceEEEEee-CCEEEEEeCCCcEEEeeCCCCCC---eeeeeeecCCCCCeeE
Q 013717          330 ANH--------------MVVTGALRGHGKAILCLINV-AGLLMSGSADRTVRIWQRGSDGR---FGCLAVLEGHTKPVKS  391 (437)
Q Consensus       330 ~~~--------------~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~h~~~v~~  391 (437)
                      ...              ......+..| .....+.+. +.++++.-..+.|...++.....   ......+......+.+
T Consensus       241 ~nyGwp~~~g~~~~~~~~~p~~~~~~~-~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~  319 (352)
T 2ism_A          241 GNYGWPRVVGRGNDPRYRDPLYFWPQG-FPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLRE  319 (352)
T ss_dssp             CBCCTTTCCSCCCCTTSCCCSEECTTC-CCEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEE
T ss_pred             CcCCCCcccCCCCCCCCcCCeEecCCC-CCCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeE
Confidence            100              0011111112 233445544 34555555566777777764331   0011222122357899


Q ss_pred             EEEEccCCCCceEEEEEecCCC
Q 013717          392 LTAVTEEGQNGVVSVFSGSLDG  413 (437)
Q Consensus       392 l~~~~~~~~~~~~~l~s~~~dg  413 (437)
                      +++.|++.    .|+++-..+|
T Consensus       320 v~~~pdG~----lyv~~~~~~g  337 (352)
T 2ism_A          320 VQVGPDGA----LYVTTSNRDG  337 (352)
T ss_dssp             EEECTTSC----EEEEECSTTT
T ss_pred             EEECCCCc----EEEEEeCCCC
Confidence            99999875    3444444444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.91  E-value=0.18  Score=43.80  Aligned_cols=183  Identities=14%  Similarity=0.210  Sum_probs=110.5

Q ss_pred             EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCC---------eE
Q 013717          155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNG---------LI  225 (437)
Q Consensus       155 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~l  225 (437)
                      ++.....+-+.+||+ +++.+..+.                                .+.++.+..-+.         ++
T Consensus        43 ii~t~k~~gL~Vydl-~G~~l~~~~--------------------------------~g~~nnVD~r~~~~l~g~~~dla   89 (355)
T 3amr_A           43 LITTNKKSGLVVYSL-DGKMLHSYN--------------------------------TGKLNNVDIRYDFPLNGKKVDIA   89 (355)
T ss_dssp             EEEEETTTEEEEEET-TSCEEEEEC--------------------------------CSCEEEEEEEEEEEETTEEEEEE
T ss_pred             EEEEcCCCCEEEEcC-CCcEEEEcc--------------------------------CCCcccEEEecccccCCceEeEE
Confidence            666677789999999 565444332                                133444444331         33


Q ss_pred             EEEEC---CCcEEEEEC--CCcceEEEeec------cc-ccEEEEEE--ecC-Ce--EEEEeCCCeEEEecCCC---Ccc
Q 013717          226 YSVSW---DKSLKIWRA--SDLRCLESIKA------HE-DAVNAVAV--SAG-GT--VYTGSADRKIRVWAKPF---NEK  285 (437)
Q Consensus       226 ~~~~~---dg~i~iwd~--~~~~~~~~~~~------~~-~~v~~~~~--~~~-~~--l~~~~~dg~v~iwd~~~---~~~  285 (437)
                      ++...   +++|.+|++  .+++ +..+..      .. ..+..+++  +|. +.  +++...+|.+..|++..   ...
T Consensus        90 ~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~  168 (355)
T 3amr_A           90 AASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI  168 (355)
T ss_dssp             EEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE
T ss_pred             EEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc
Confidence            33333   578999977  3333 444421      11 45666777  663 43  77788889999998842   224


Q ss_pred             cceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCc-cceEEeeee-ccc-ccceEEEEe--e--CC-EEE
Q 013717          286 RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSA-NHMVVTGAL-RGH-GKAILCLIN--V--AG-LLM  357 (437)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~-~~~-~~~i~~~~~--~--~~-~l~  357 (437)
                      ..+.++++.. .+.+..+...+....|+.+-++.-|..|+.+... ......... .++ ...+-.++.  .  +. +|+
T Consensus       169 ~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLi  247 (355)
T 3amr_A          169 SGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLM  247 (355)
T ss_dssp             EEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEE
T ss_pred             cceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEE
Confidence            5567777764 4678899999988899999998777777754221 111122222 121 123444443  2  33 566


Q ss_pred             EEe-CCCcEEEeeCCC
Q 013717          358 SGS-ADRTVRIWQRGS  372 (437)
Q Consensus       358 ~~~-~dg~i~iwd~~~  372 (437)
                      +++ .++++.+||...
T Consensus       248 vSsQG~~s~~Vydr~~  263 (355)
T 3amr_A          248 ASSQGNSSYAIYDRQG  263 (355)
T ss_dssp             EEEGGGTEEEEEESST
T ss_pred             EEcCCCCEEEEEECCC
Confidence            555 577999999973

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=96.78  E-value=0.2  Score=42.48  Aligned_cols=226  Identities=14%  Similarity=0.140  Sum_probs=125.5

Q ss_pred             ccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC
Q 013717          143 GSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN  222 (437)
Q Consensus       143 ~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  222 (437)
                      ..|..|+......+.-. ||.|..|-...........                              .....|..++...
T Consensus        24 ~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~------------------------------~~~~~i~~ia~G~   72 (282)
T 3qhy_B           24 SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA------------------------------ATQSGVDAIAAGN   72 (282)
T ss_dssp             SSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCG------------------------------GGGSCCCEEEECS
T ss_pred             CCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCc------------------------------cCCCCEEEEEeCC
Confidence            46788887776633335 9999999876543222100                              0223567777766


Q ss_pred             CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEE
Q 013717          223 GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNA  302 (437)
Q Consensus       223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~  302 (437)
                      ...+... ||.|..|-....-.+..-......|..++...+-.++. . +|.|..|-.........    .......|..
T Consensus        73 ~hs~~l~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs~al-~-~G~v~~wG~n~~gqlg~----~~~~~~~i~~  145 (282)
T 3qhy_B           73 YHSLALK-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYAL-K-DGKVIAWGDDSDGQTTV----PAEAQSGVTA  145 (282)
T ss_dssp             SEEEEEE-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEEEEE-E-TTEEEEEECCTTSTTSC----CGGGGSSEEE
T ss_pred             CEEEEEE-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEEEEE-e-CCeEEEecCCCCCcCCC----CccCCCCeEE
Confidence            4444445 99999997654221111111234688887764433444 3 99999995432221111    1112345777


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeee
Q 013717          303 LALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVL  382 (437)
Q Consensus       303 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  382 (437)
                      ++...+  +.+.-. ||.|+.|-.....+....    ......|..++.-....+.- .||.|+.|-.....+.   ...
T Consensus       146 i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~p----~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gql---g~p  214 (282)
T 3qhy_B          146 LDGGVY--TALAVK-NGGVIAWGDNYFGQTTVP----AEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQT---TVP  214 (282)
T ss_dssp             EEECSS--EEEEEE-TTEEEEEECCTTSTTSCC----GGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTT---CCC
T ss_pred             EEcccC--EEEEEE-CCEEEEecCCCCCCCCCc----eecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCC---CCC
Confidence            766543  333334 799999987643322211    11234577777666644444 6999999976654321   111


Q ss_pred             cCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          383 EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       383 ~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      ......|..|+.-...      .++..  ||.|+.|=-....+
T Consensus       215 ~~~~~~v~~i~~G~~h------~~al~--~g~v~~wG~n~~gq  249 (282)
T 3qhy_B          215 TEALSGVSAIASGEWY------SLALK--NGKVIAWGSSRTAP  249 (282)
T ss_dssp             GGGGSSCCEEEECSSC------EEEEE--TTEEEEESTTCCCC
T ss_pred             cccCCCceEEEcCCCE------EEEEE--CCEEEEecCCCCcc
Confidence            1112357777765543      33333  99999997655443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.73  E-value=0.27  Score=43.32  Aligned_cols=226  Identities=12%  Similarity=0.055  Sum_probs=114.2

Q ss_pred             ccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717          143 GSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN  221 (437)
Q Consensus       143 ~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  221 (437)
                      .....|+|.++. |+.+..+|.|++++. +++  ..+..++                        ++.........|+++
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~--~~~~~~~------------------------v~~~g~~g~~gia~~   81 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGK--KLVASFD------------------------VANVGEAGLLGLALH   81 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEECS-SCE--EEEEECC------------------------CCCSTTCSEEEEEEC
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc--eEeeccc------------------------eeecCCCceeeEEeC
Confidence            456789998655 888888899999873 333  1111111                        001123457788888


Q ss_pred             CC-----eEEEEEC----C----CcEEEEECCCc-------ceE-EEeec-ccccEEEEEEecCCeEEEEeCC-------
Q 013717          222 NG-----LIYSVSW----D----KSLKIWRASDL-------RCL-ESIKA-HEDAVNAVAVSAGGTVYTGSAD-------  272 (437)
Q Consensus       222 ~~-----~l~~~~~----d----g~i~iwd~~~~-------~~~-~~~~~-~~~~v~~~~~~~~~~l~~~~~d-------  272 (437)
                      |.     .|+.+..    +    +.|..|+....       +.+ ..+.. .......|+|.|||.|..+..+       
T Consensus        82 pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~  161 (354)
T 3a9g_A           82 PEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLA  161 (354)
T ss_dssp             TTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGG
T ss_pred             CCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccc
Confidence            73     6665543    2    56777776543       111 11221 1123467999999995444322       


Q ss_pred             -------CeEEEecCCCCccc-----ceeeEEeeCccccEEEEEEcc-CCCEEEEEeCCC---cEEEEECCCCcc-----
Q 013717          273 -------RKIRVWAKPFNEKR-----HALIATLEKHKSAVNALALSD-DGTVLFSGACDR---SILVWDREDSAN-----  331 (437)
Q Consensus       273 -------g~v~iwd~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~~~-----  331 (437)
                             |.|..++.......     ...+. ..++ .....++|+| +|+++++-...+   .|.+..  .+..     
T Consensus       162 ~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~-a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~  237 (354)
T 3a9g_A          162 QDLSSLAGKILRVDEEGRPPADNPFPNSPIW-SYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPL  237 (354)
T ss_dssp             TCTTCCSSEEEEECTTSCCCTTSSSTTCCEE-EECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTT
T ss_pred             cCCCCCCeEEEEEcCCCCCCCCCCCCCCcEE-EEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCc
Confidence                   45666654321000     00111 1122 3356899999 666555432222   233322  1110     


Q ss_pred             ---------ceEEeeeecccccceEEEEe---------eCCEEEEEeCCCcEEEeeCCCCCCeeeeee-ecCCCCCeeEE
Q 013717          332 ---------HMVVTGALRGHGKAILCLIN---------VAGLLMSGSADRTVRIWQRGSDGRFGCLAV-LEGHTKPVKSL  392 (437)
Q Consensus       332 ---------~~~~~~~~~~~~~~i~~~~~---------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~l  392 (437)
                               .......+.........+.+         .+.++++.-..+.|...++........... +.+....+..+
T Consensus       238 ~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v  317 (354)
T 3a9g_A          238 ATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDV  317 (354)
T ss_dssp             CCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEE
T ss_pred             ccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEE
Confidence                     00011111011223455554         344666555667888888875321111222 33335678999


Q ss_pred             EEEccCC
Q 013717          393 TAVTEEG  399 (437)
Q Consensus       393 ~~~~~~~  399 (437)
                      ++.|++.
T Consensus       318 ~~~pDG~  324 (354)
T 3a9g_A          318 VIDDDGG  324 (354)
T ss_dssp             EECTTSC
T ss_pred             EECCCCc
Confidence            9999874

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.57  E-value=0.19  Score=51.96  Aligned_cols=191  Identities=13%  Similarity=0.165  Sum_probs=114.6

Q ss_pred             eCC-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCc--
Q 013717          220 VNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKH--  296 (437)
Q Consensus       220 ~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~--  296 (437)
                      .+| ..+++--...++.|+|+++.+.+....- ...|.-=.|-.+..|+..+ +..|..|++..+.   .+.+.+..|  
T Consensus        73 MnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s---~P~k~fdR~~~  147 (1630)
T 1xi4_A           73 MNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGES---QPVKMFDRHSS  147 (1630)
T ss_pred             cCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEEEc-CCeEEEeccCCCC---ccHHHHhcchh
Confidence            344 3333333478999999999888877764 3456666776666544443 4579999996432   233333333  


Q ss_pred             --cccEEEEEEccCCCEEEEEe-------CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-----EEEEEeC-
Q 013717          297 --KSAVNALALSDDGTVLFSGA-------CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-----LLMSGSA-  361 (437)
Q Consensus       297 --~~~i~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~l~~~~~-  361 (437)
                        ...|..-..+++.++++..+       -.|.+.+|..+..     ..+.+.||...-..+...++     +++.+.. 
T Consensus       148 L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-----~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~  222 (1630)
T 1xi4_A          148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRG  222 (1630)
T ss_pred             cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-----cchhhhHhHhhhheeccCCCCCCceEEEEEEec
Confidence              46788888899999877543       3588899988654     33345666665555544433     2222222 


Q ss_pred             --CCcEEEeeCCCC----CCe--eeeeee---cCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          362 --DRTVRIWQRGSD----GRF--GCLAVL---EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       362 --dg~i~iwd~~~~----~~~--~~~~~~---~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                        .+.++|-++...    ..+  +.+..+   ..-.+--.++..++..+     ++.....-|.|.++|+.++..
T Consensus       223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-----~iy~itk~G~~~~~d~~t~~~  292 (1630)
T 1xi4_A          223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-----VVFLITKYGYIHLYDLETGTC  292 (1630)
T ss_pred             CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-----EEEEEecCceEEEEecccchh
Confidence              268999888653    111  000001   11122233555565543     677777889999999999864

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.56  E-value=0.35  Score=42.40  Aligned_cols=177  Identities=10%  Similarity=0.087  Sum_probs=99.8

Q ss_pred             EEEEEeCC-CeEEEEE-------------CCCcEEEEECCCc-ceEEEee--c-----ccccEEEEEEec--CCe--EEE
Q 013717          215 VTGLAVNN-GLIYSVS-------------WDKSLKIWRASDL-RCLESIK--A-----HEDAVNAVAVSA--GGT--VYT  268 (437)
Q Consensus       215 v~~~~~~~-~~l~~~~-------------~dg~i~iwd~~~~-~~~~~~~--~-----~~~~v~~~~~~~--~~~--l~~  268 (437)
                      ..++...+ ..+++++             .+|.|.++|..+. .....+.  +     ..-....+.+.+  ++.  |++
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            34555555 5555555             6899999998742 1122332  2     123567777765  453  444


Q ss_pred             E-eC--CCeEEEecCCCCcccceeeEEeeCc-cccEEEEEEccCCCEEEEEeC-----------------CCcEEEEECC
Q 013717          269 G-SA--DRKIRVWAKPFNEKRHALIATLEKH-KSAVNALALSDDGTVLFSGAC-----------------DRSILVWDRE  327 (437)
Q Consensus       269 ~-~~--dg~v~iwd~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~-----------------dg~i~i~d~~  327 (437)
                      + ..  +..|.+|++.........+..+.+. -...+.+++.++|.+.++...                 .|.|+-+|..
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~  211 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  211 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence            4 33  5678888876554444555555543 246889999999987776541                 2456666542


Q ss_pred             CCccceEEeeeecccccceEEEEeeCC--EEE-EEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc-cCC
Q 013717          328 DSANHMVVTGALRGHGKAILCLINVAG--LLM-SGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT-EEG  399 (437)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~  399 (437)
                        + ...+...    -.....++++++  .|+ +-+..+.|..|++...........+. ..+..-.+++.+ ++.
T Consensus       212 --~-~~~~~~~----l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~  279 (355)
T 3sre_A          212 --D-VRVVAEG----FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGD  279 (355)
T ss_dssp             --C-CEEEEEE----ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCC
T ss_pred             --e-EEEeecC----CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCc
Confidence              2 2222211    123355666544  444 44567899999987543233333332 245567777777 353

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.55  E-value=0.24  Score=51.23  Aligned_cols=254  Identities=8%  Similarity=0.109  Sum_probs=139.1

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCC
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNS  196 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (437)
                      .|.|-|+..+.....+.+        .--+...+|.. +++--...++.|+|+++.+..+...                 
T Consensus        49 ~vvIidl~~~~~~~rrpi--------~AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~-----------------  103 (1630)
T 1xi4_A           49 QVVIIDMNDPSNPIRRPI--------SADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHT-----------------  103 (1630)
T ss_pred             eEEEEECCCCCCcccccc--------cchhhccCCCcceEEEecCCeEEEeehHHhhhhcccc-----------------
Confidence            888889887432211111        11122234444 4444457899999999876555443                 


Q ss_pred             eeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCc-ceEEEeecc----cccEEEEEEecCCe--EEE
Q 013717          197 YVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDL-RCLESIKAH----EDAVNAVAVSAGGT--VYT  268 (437)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~----~~~v~~~~~~~~~~--l~~  268 (437)
                                    ...+|.--.|-. +.|+..+ +..|..|++... .+...+..|    ...|..-..+++.+  +++
T Consensus       104 --------------~~e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~  168 (1630)
T 1xi4_A          104 --------------MTDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLT  168 (1630)
T ss_pred             --------------cCCCceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEE
Confidence                          344666677754 6666555 457999999642 233333222    45677777788887  444


Q ss_pred             Ee------CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEcc---CCCEEEEEeC---CCcEEEEECCCC-ccceEE
Q 013717          269 GS------ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD---DGTVLFSGAC---DRSILVWDREDS-ANHMVV  335 (437)
Q Consensus       269 ~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~---dg~i~i~d~~~~-~~~~~~  335 (437)
                      |-      -.|.+.+|..+..     ..+.+++|.+....+....   ....++.+..   .+.++|.++... .....+
T Consensus       169 gi~~~~~~v~G~mQLyS~er~-----~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f  243 (1630)
T 1xi4_A          169 GISAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF  243 (1630)
T ss_pred             eeccCCCcccceeeeeecccc-----cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCC
Confidence            43      3588899976543     2334555555443333321   1223332222   378999998543 110111


Q ss_pred             ee-----eec--ccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEE
Q 013717          336 TG-----ALR--GHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSV  406 (437)
Q Consensus       336 ~~-----~~~--~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l  406 (437)
                      ..     .+.  ....-..++..++.  .+..-+.-|.|.+||+.++.   ++..-+-...+|-..+.....+.     +
T Consensus       244 ~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~---~i~~~ris~~~iF~~~~~~~~~g-----~  315 (1630)
T 1xi4_A          244 PKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT---CIYMNRISGETIFVTAPHEATAG-----I  315 (1630)
T ss_pred             ccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccch---hhhhccccCCceEEeccCCCCCc-----e
Confidence            00     011  11222234444443  77888899999999999987   55444444445544443333222     5


Q ss_pred             EEecCCCcEEEEeeccCC
Q 013717          407 FSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       407 ~s~~~dg~i~iw~~~~~~  424 (437)
                      +.....|.|.--.++...
T Consensus       316 ~~vnr~G~vl~v~v~~~~  333 (1630)
T 1xi4_A          316 IGVNRKGQVLSVCVEEEN  333 (1630)
T ss_pred             EEEcCCceEEEEEEccch
Confidence            555567777666665544

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.48  E-value=0.44  Score=42.53  Aligned_cols=149  Identities=13%  Similarity=0.096  Sum_probs=89.7

Q ss_pred             cCCe-EEEEeCCCeEEEecCCCCcccceeeEEee-CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccc-------
Q 013717          262 AGGT-VYTGSADRKIRVWAKPFNEKRHALIATLE-KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANH-------  332 (437)
Q Consensus       262 ~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------  332 (437)
                      .+|. ++.+ .++.||.-++.... .++.+..-. -.-..|..+..+|+|++||..+ +..|.|..+..+...       
T Consensus        30 ~n~t~i~~a-~~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           30 QNGTRIVFI-QDNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             TTTTEEEEE-ETTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred             cCCCEEEEE-ECCEEEEEECCCCC-cceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence            3444 4443 34778877765322 233222110 0123577899999999999886 457999988733211       


Q ss_pred             ---eEEeeeecc----cccceEEEEeeCC-----EEEEEeCCCcEEEeeCCCCCCeeeeeeec---------CCCCCeeE
Q 013717          333 ---MVVTGALRG----HGKAILCLINVAG-----LLMSGSADRTVRIWQRGSDGRFGCLAVLE---------GHTKPVKS  391 (437)
Q Consensus       333 ---~~~~~~~~~----~~~~i~~~~~~~~-----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~  391 (437)
                         ......+..    ....|..+.|++-     .|++-..|+.|++||+..... .+. .+.         .....|.+
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~-~P~-~L~k~~~~fg~d~~~~ev~S  184 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE-KPI-VLNKPNNSFGLDARVNDITD  184 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS-CCE-EESCCCSEEESCSSCCCEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC-CCc-chhccccccCCCcccceEEE
Confidence               111111111    2467889999864     899999999999999986321 112 222         22356888


Q ss_pred             EEEEccCCCCceEEEEEecCCCcEEEE
Q 013717          392 LTAVTEEGQNGVVSVFSGSLDGEIRAW  418 (437)
Q Consensus       392 l~~~~~~~~~~~~~l~s~~~dg~i~iw  418 (437)
                      ++|..++=.   .|+++...+|.|+-.
T Consensus       185 ~~Fg~~~lT---LYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          185 LEFSKDGLT---LYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEECTTSSC---EEEEECTTSCEEEEE
T ss_pred             EEEcCCCcE---EEEEecCCCCCEEEE
Confidence            999885422   455556688888654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.47  E-value=0.65  Score=44.43  Aligned_cols=216  Identities=15%  Similarity=0.122  Sum_probs=114.8

Q ss_pred             CceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEec-C-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe
Q 013717           77 DETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASS-H-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC  151 (437)
Q Consensus        77 dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~-d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~  151 (437)
                      ...|+.-+++........+ ..-.....|+|+  ++.|+.+.. + .|..++++.... ....+   .........|++.
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~-~~~v~---~~~~~~P~GlAvD   92 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-VQNVV---VSGLLSPDGLACD   92 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CEEEE---CSSCSCEEEEEEE
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc-eEEEE---eCCCCCcCeEEEE
Confidence            3455555554332112222 445567899998  566665554 4 899999886421 11111   1122568888888


Q ss_pred             C--Ce-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEE
Q 013717          152 D--GK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIY  226 (437)
Q Consensus       152 ~--~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~  226 (437)
                      .  +. +++-...+.|.+.+++.........                              ..-....+|+++|  +.|+
T Consensus        93 ~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~------------------------------~~l~~P~~Iavdp~~g~ly  142 (619)
T 3s94_A           93 WLGEKLYWTDSETNRIEVSNLDGSLRKVLFW------------------------------QELDQPRAIALDPSSGFMY  142 (619)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSCEEEEC------------------------------SSCSCCCCEEEETTTTEEE
T ss_pred             ecCCEEEEEeCCCCEEEEEECCCCCEEEEEe------------------------------CCCCCCceEEEecCCCeEE
Confidence            4  44 4455567899999987543211110                              1223455778876  5666


Q ss_pred             EEEC--CCcEEEEECCCcceEEEeecccccEEEEEEecCC-eE-EEEeCCCeEEEecCCCCcccceeeEEeeCccccEEE
Q 013717          227 SVSW--DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG-TV-YTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNA  302 (437)
Q Consensus       227 ~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~  302 (437)
                      ....  .+.|...++............-...+.|++++++ +| ++-...+.|..+|+..... ....   .+.......
T Consensus       143 ~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~-~~~~---~~~~~~P~g  218 (619)
T 3s94_A          143 WTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVV---KGSLPHPFA  218 (619)
T ss_dssp             EEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEE-C------------CCC
T ss_pred             EeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCcc-EEEE---eCCCCCceE
Confidence            6553  3567767765433333332334567899999865 44 4445567899998864321 1111   111223356


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCcc
Q 013717          303 LALSDDGTVLFSGACDRSILVWDREDSAN  331 (437)
Q Consensus       303 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  331 (437)
                      |++..+ ..+++-...+.|...|..+++.
T Consensus       219 i~~~~~-~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          219 LTLFED-ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             EEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred             EEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence            777655 4444445577898888876543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.13  E-value=0.82  Score=42.08  Aligned_cols=155  Identities=10%  Similarity=0.031  Sum_probs=89.8

Q ss_pred             cEEEEEEecC--CeEEEEeC-CCeEEEecCCCCcccceeeEEee-C---ccccEEEEEE-------ccCCCEEEEEeCCC
Q 013717          254 AVNAVAVSAG--GTVYTGSA-DRKIRVWAKPFNEKRHALIATLE-K---HKSAVNALAL-------SDDGTVLFSGACDR  319 (437)
Q Consensus       254 ~v~~~~~~~~--~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~-~---~~~~i~~~~~-------~~~~~~l~~~~~dg  319 (437)
                      ....|+++|.  +.|+++.. .+.|++.|+..+.     +..+. .   ....+..++|       +++|++|+++...+
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-----v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~  214 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-----LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD  214 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-----EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-----EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence            4678899984  34544444 4678888876432     22222 1   1235899999       99999666665543


Q ss_pred             -------cEEEEECCC-Cccce----EEeeeecccccceEEEEeeC--C-EEEEEeCCCcEEEeeCC-------CCCC--
Q 013717          320 -------SILVWDRED-SANHM----VVTGALRGHGKAILCLINVA--G-LLMSGSADRTVRIWQRG-------SDGR--  375 (437)
Q Consensus       320 -------~i~i~d~~~-~~~~~----~~~~~~~~~~~~i~~~~~~~--~-~l~~~~~dg~i~iwd~~-------~~~~--  375 (437)
                             .|.+++... +....    .....+. |   ...++.++  . ++++-..++.|..+|+.       ++..  
T Consensus       215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~---p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t  290 (496)
T 3kya_A          215 GKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK-Q---CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD  290 (496)
T ss_dssp             TTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES-C---CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred             CCcccCceEEEEecCCCCceeecccceeeccCC-C---ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence                   266776443 12110    1111211 2   22334443  3 56666678889999987       4442  


Q ss_pred             ---------eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717          376 ---------FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       376 ---------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                               ...+... +....-..|+|+|+++.    ++++-.....|+.++.+.
T Consensus       291 p~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~----lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          291 PIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKY----AYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             CBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSE----EEEEETTTTEEEEEEEET
T ss_pred             ccccccccccceeEec-CCCCCceEEEEcCCCCE----EEEEeCCCCEEEEEecCC
Confidence                     1122222 22345689999999852    466666778888877653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.00  E-value=0.75  Score=40.49  Aligned_cols=74  Identities=14%  Similarity=0.186  Sum_probs=49.4

Q ss_pred             cccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEe---eCccccEEEEEEccC---CCEEEEEeC----C---
Q 013717          252 EDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATL---EKHKSAVNALALSDD---GTVLFSGAC----D---  318 (437)
Q Consensus       252 ~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~---~~~l~~~~~----d---  318 (437)
                      -.....|+|.|+|+|+++..+|.|+++|.. ..   ..+..+   .........|+++|+   +..|+++..    +   
T Consensus        28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~~-G~---~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVTERPGRLVLISPS-GK---KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             CSCEEEEEEEETTEEEEEETTTEEEEECSS-CE---EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred             CCCCeEEEEcCCCeEEEEeCCCEEEEEeCC-Cc---eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence            345789999999998888888999999732 21   222222   122356889999997   555555443    3   


Q ss_pred             -CcEEEEECCCC
Q 013717          319 -RSILVWDREDS  329 (437)
Q Consensus       319 -g~i~i~d~~~~  329 (437)
                       +.|..|+....
T Consensus       104 ~~~v~r~~~~~~  115 (354)
T 3a9g_A          104 RNRVIRGRLDGS  115 (354)
T ss_dssp             EEEEEEEEECSS
T ss_pred             ceEEEEEEECCC
Confidence             57888887643

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.97  E-value=0.23  Score=39.93  Aligned_cols=187  Identities=12%  Similarity=0.056  Sum_probs=93.4

Q ss_pred             CeEEEEECCCcEEEEECCCcc------eEEEeec-ccccEEEEEEecCCeEEEEeCCCeEEEecCCCCccc-ce-eeEEe
Q 013717          223 GLIYSVSWDKSLKIWRASDLR------CLESIKA-HEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKR-HA-LIATL  293 (437)
Q Consensus       223 ~~l~~~~~dg~i~iwd~~~~~------~~~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~-~~~~~  293 (437)
                      .+|+....| +++.=....+.      ....+-. .=..+..++|+|+|.|... .+|.+.-.+..+.... +. .-..+
T Consensus         5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~I   82 (236)
T 1tl2_A            5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKI   82 (236)
T ss_dssp             CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEE
T ss_pred             eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEe
Confidence            355666666 65555444443      1122211 1246779999999996666 7888777665332110 00 00111


Q ss_pred             -eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEe-ee-e-cccccceEEEEeeCC-EEEEEeCCCcEEEe
Q 013717          294 -EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVT-GA-L-RGHGKAILCLINVAG-LLMSGSADRTVRIW  368 (437)
Q Consensus       294 -~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~-~-~~~~~~i~~~~~~~~-~l~~~~~dg~i~iw  368 (437)
                       ...-..-.++.|.|+|.+.++  .||.|+-++-.+.....-+. .. + ..--..+..+.++++ .|.+.. |+.++-+
T Consensus        83 G~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~  159 (236)
T 1tl2_A           83 GNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKA  159 (236)
T ss_dssp             ECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEE
T ss_pred             cccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEec
Confidence             001112478999999987777  56989888753322111000 00 0 111134567777766 555555 8875443


Q ss_pred             eCCCCC--Ceeeeeee-c-CCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          369 QRGSDG--RFGCLAVL-E-GHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       369 d~~~~~--~~~~~~~~-~-~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      ......  .+....+. . ..-..-+-+.|.+++      .|..+. +|  ++|....+
T Consensus       160 ~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G------~l~~v~-~g--~~Y~~~~p  209 (236)
T 1tl2_A          160 LPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG------TLFGVQ-GG--KFYEDYPP  209 (236)
T ss_dssp             CCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS------CEEEEE-TT--EEEEESCC
T ss_pred             CCCCCCCcccccccceeccCCcceEEEEEECCCC------cEEEEe-CC--eEEecCCc
Confidence            322111  11111111 1 222234456678877      355555 66  66666443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.87  E-value=0.22  Score=43.30  Aligned_cols=145  Identities=8%  Similarity=0.077  Sum_probs=81.6

Q ss_pred             CeEEEEECCCcEEEEECCCcceEEEeecc-cccEEEEEEe---cCCeEEEE--eCCCeEEEecCCCCcccceeeEEeeC-
Q 013717          223 GLIYSVSWDKSLKIWRASDLRCLESIKAH-EDAVNAVAVS---AGGTVYTG--SADRKIRVWAKPFNEKRHALIATLEK-  295 (437)
Q Consensus       223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~---~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~-  295 (437)
                      +.++.++.||.|.-+|..+|+.+..++.. ..++....-.   .++.++.+  +.||.|..++...+...+  ...... 
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~--~~~~~~l   88 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL--PLSIRQL   88 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE--EEEHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe--eeccccc
Confidence            57899999999999999999999988744 1222221111   13344444  689999999876542211  111110 


Q ss_pred             -ccccEEE---EEE-----ccCCCEEEEEeCCCcEEEEECCCCccceEEeeeec-ccc--cceEEEE-------eeCCEE
Q 013717          296 -HKSAVNA---LAL-----SDDGTVLFSGACDRSILVWDREDSANHMVVTGALR-GHG--KAILCLI-------NVAGLL  356 (437)
Q Consensus       296 -~~~~i~~---~~~-----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~--~~i~~~~-------~~~~~l  356 (437)
                       ..+++..   ...     ...+..+++|+.+|.+...|+++++..+.+..... ++-  ....|..       ..++.|
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v  168 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI  168 (339)
T ss_dssp             HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred             eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence             1112221   000     01355888999999999999999987665532111 000  0011111       123567


Q ss_pred             EEEeCCCcEEEee
Q 013717          357 MSGSADRTVRIWQ  369 (437)
Q Consensus       357 ~~~~~dg~i~iwd  369 (437)
                      +.+..+..+.+.+
T Consensus       169 ~ig~~~y~v~~~~  181 (339)
T 2be1_A          169 VIGKTIFELGIHS  181 (339)
T ss_dssp             EEEEEEEECEECC
T ss_pred             EEecceEEEEEEC
Confidence            7777777777776

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.54  E-value=1.6  Score=42.51  Aligned_cols=193  Identities=9%  Similarity=0.061  Sum_probs=97.5

Q ss_pred             eCCCeEEEEECC----CcEEEEECCCcceEEEe-e------cccccEEEEEEec-CCe-EEEEeCC------CeEEEecC
Q 013717          220 VNNGLIYSVSWD----KSLKIWRASDLRCLESI-K------AHEDAVNAVAVSA-GGT-VYTGSAD------RKIRVWAK  280 (437)
Q Consensus       220 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~-~------~~~~~v~~~~~~~-~~~-l~~~~~d------g~v~iwd~  280 (437)
                      .....++.|+.+    ..+.+||..+.+-...- .      .....-.+++..+ +++ ++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            344677777653    46888998876543322 1      1111112333333 667 6677643      35778877


Q ss_pred             CCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC--cEEEEECCCCccceEEeee---ecccccceEEEEee---
Q 013717          281 PFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR--SILVWDREDSANHMVVTGA---LRGHGKAILCLINV---  352 (437)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~---~~~~~~~i~~~~~~---  352 (437)
                      .++  .+..+..+...... .+++...++++++.|+.++  .+.+||..+..  +.....   .........++.++   
T Consensus       476 ~t~--~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~a~v~~~~~  550 (695)
T 2zwa_A          476 KTR--EWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEI--FKDVTPKDEFFQNSLVSAGLEFDPVS  550 (695)
T ss_dssp             TTT--EEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTE--EEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred             CCC--cEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCc--eEEccCCCCCCCcccceeEEEEeCCC
Confidence            543  33333222211111 2233323788888887655  68999998753  222221   11111111223334   


Q ss_pred             CCEEEEEeC--C-----CcEEEeeCCCCCC-----eeeeeeec-CCCCCeeEEEEEccCCCCceEEEEEecCC-------
Q 013717          353 AGLLMSGSA--D-----RTVRIWQRGSDGR-----FGCLAVLE-GHTKPVKSLTAVTEEGQNGVVSVFSGSLD-------  412 (437)
Q Consensus       353 ~~~l~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-------  412 (437)
                      +.+++.|+.  +     ..+.+||+.+..-     +..+.... .....-..+ ...++     ++++.||.+       
T Consensus       551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~-----~iyv~GG~~~~~~~~~  624 (695)
T 2zwa_A          551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-YITPR-----KLLIVGGTSPSGLFDR  624 (695)
T ss_dssp             TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-EEETT-----EEEEECCBCSSCCCCT
T ss_pred             CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-EeCCC-----EEEEECCccCCCCCCC
Confidence            446666765  2     3588999987662     44443321 111112222 33323     367777743       


Q ss_pred             -CcEEEEeeccC
Q 013717          413 -GEIRAWQVSVS  423 (437)
Q Consensus       413 -g~i~iw~~~~~  423 (437)
                       ..|.+||+.+.
T Consensus       625 ~~~v~~yd~~t~  636 (695)
T 2zwa_A          625 TNSIISLDPLSE  636 (695)
T ss_dssp             TTSEEEEETTTT
T ss_pred             CCeEEEEECCCC
Confidence             45888887754

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.53  E-value=0.73  Score=40.05  Aligned_cols=185  Identities=10%  Similarity=-0.006  Sum_probs=95.9

Q ss_pred             eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe----CCCeEEEE-
Q 013717          154 KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV----NNGLIYSV-  228 (437)
Q Consensus       154 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~-  228 (437)
                      .++.++.||.|.-.|..+++....+..-.                             ..++....-    ....++.+ 
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~-----------------------------~~p~~~~~~~~~~~~~~~~vv~   62 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPEN-----------------------------FQPLIEIQEPSRLETYETLIIE   62 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGG-----------------------------SCCSEECCCSCTTTSSEEEEEC
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCc-----------------------------cCCcEEecCCccccCCcEEEEE
Confidence            48899999999999999988665554210                             000000000    11344444 


Q ss_pred             -ECCCcEEEEECCCcceEEEeec----ccccEEE---EEE------ecCCeEEEEeCCCeEEEecCCCCcccceeeEEee
Q 013717          229 -SWDKSLKIWRASDLRCLESIKA----HEDAVNA---VAV------SAGGTVYTGSADRKIRVWAKPFNEKRHALIATLE  294 (437)
Q Consensus       229 -~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~---~~~------~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  294 (437)
                       ..||.|..+|..+|.....+..    ...++..   ..+      +.++.+++|+.+|.+...|+.++..    +..+.
T Consensus        63 p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~----~W~~~  138 (339)
T 2be1_A           63 PFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI----ISAFG  138 (339)
T ss_dssp             CSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE----EEEES
T ss_pred             ECCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE----EEEEe
Confidence             5899999999988865544431    1112221   001      1355689999999999999887653    33333


Q ss_pred             Ccc--cc-----EEEEE---Ec--cCCCEEEEEeCCCcEEEEECCCCccceEEe-eeecccccc--e---EEEEeeCCEE
Q 013717          295 KHK--SA-----VNALA---LS--DDGTVLFSGACDRSILVWDREDSANHMVVT-GALRGHGKA--I---LCLINVAGLL  356 (437)
Q Consensus       295 ~~~--~~-----i~~~~---~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~--i---~~~~~~~~~l  356 (437)
                      ...  ..     ..|..   +.  ..+..++.+..+..+.+.+ ++++ .+... .........  +   ..+..++.+ 
T Consensus       139 ~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-  215 (339)
T 2be1_A          139 PGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-  215 (339)
T ss_dssp             TTCBCC--------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-
T ss_pred             cCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-
Confidence            211  00     00111   10  1245677777777777777 4443 22221 111111000  0   000011233 


Q ss_pred             EEEeCCCcEEEeeCCCCC
Q 013717          357 MSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       357 ~~~~~dg~i~iwd~~~~~  374 (437)
                      +.++.||.|.-+|..++.
T Consensus       216 ~~~~~dg~v~A~d~~~G~  233 (339)
T 2be1_A          216 IAPFRDKSLLASDLDFRI  233 (339)
T ss_dssp             EEEETTTEEEEECSTTCC
T ss_pred             EEECCCCEEEEEECCCCc
Confidence            457778888888877665

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.51  E-value=0.75  Score=36.96  Aligned_cols=151  Identities=11%  Similarity=0.059  Sum_probs=79.8

Q ss_pred             ccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717          143 GSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN  221 (437)
Q Consensus       143 ~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  221 (437)
                      ..+..++|+|+. |.+. .+|.+.-.+..+.+...-.....              .  +..      .+-. .-.++.|+
T Consensus        41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t--------------~--IG~------~Gw~-~F~a~~fD   96 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAK--------------K--IGN------GGWN-QFQFLFFD   96 (236)
T ss_dssp             TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCE--------------E--EEC------SCGG-GCSEEEEC
T ss_pred             ccceeEEECCCccEEEE-eCCeEEEECCCCCCccccccccc--------------E--ecc------cccc-cceEEEEC
Confidence            367799999877 6666 78876666654432111111000              0  000      0001 13577888


Q ss_pred             C-CeEEEEECCCcEEEEECCCcceE------EEe-ecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCc-ccce-eeE
Q 013717          222 N-GLIYSVSWDKSLKIWRASDLRCL------ESI-KAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNE-KRHA-LIA  291 (437)
Q Consensus       222 ~-~~l~~~~~dg~i~iwd~~~~~~~------~~~-~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~-~~~  291 (437)
                      + ..|..+ .||.|.-++-.+....      ..+ ...=..+..|.+.|+|.|.+.. |+.+.-....... ..+. ...
T Consensus        97 ~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~  174 (236)
T 1tl2_A           97 PNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARAT  174 (236)
T ss_dssp             TTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCE
T ss_pred             CCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccc
Confidence            8 555555 6799988876432111      111 1112468999999999977777 8886443222111 0000 011


Q ss_pred             Eee-CccccEEEEEEccCCCEEEEEeCCCcE
Q 013717          292 TLE-KHKSAVNALALSDDGTVLFSGACDRSI  321 (437)
Q Consensus       292 ~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i  321 (437)
                      .+- ..-..-.-+.|.++|.+.++.  +|.+
T Consensus       175 ~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          175 KIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             EEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             eeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence            111 222344557799999777666  6744

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.48  E-value=1.9  Score=41.30  Aligned_cols=303  Identities=9%  Similarity=0.005  Sum_probs=153.8

Q ss_pred             CCeEEEEee--CCEEEEEecC--eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEE-EEecCCeEEEEeCCCCc
Q 013717           99 LPIGCIAVH--HNFLYAASSH--EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIF-TAHQDCKIRVWQLTPTK  173 (437)
Q Consensus        99 ~~V~~l~~~--~~~l~s~~~d--~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~-s~~~dg~i~iwd~~~~~  173 (437)
                      .....|+++  ++.|+.+...  .|...|++....+.+..     +.......|++.++.++ +-...+.|...|..+++
T Consensus       171 ~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~-----~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          171 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-----GSLPHPFALTLFEDILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------------CCCEEESSSEEEEECTTTCSEEEEESSSCC
T ss_pred             CCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe-----CCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCc
Confidence            455778888  5666666654  89999998743322211     12223456777777744 44567789888987776


Q ss_pred             ccccccccCccccceeeecCCCCe----eEEe----e-ccceeeecCCCcEEEEEe--------------CC-CeEEEEE
Q 013717          174 HHKLKTTLPTVNDRLLRFMLPNSY----VTVR----R-HKKKLWIEHGDAVTGLAV--------------NN-GLIYSVS  229 (437)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----~-~~~~~~~~~~~~v~~~~~--------------~~-~~l~~~~  229 (437)
                      ....+..-......+. ++.+...    ..+.    . ....+.........|.+.              .+ .+|+. +
T Consensus       246 ~~~~i~~~~~~p~~i~-v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~-~  323 (619)
T 3s94_A          246 GLREIHSDIFSPMDIH-AFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLL-A  323 (619)
T ss_dssp             CCEECCSCCCCCSEEE-ECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEE-E
T ss_pred             ccEEEecCCCCCcEEE-EEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEE-E
Confidence            4433321111111111 1110000    0000    0 000000000011112111              12 23443 3


Q ss_pred             CCCcEEEEECCCcceEE-Eee-cccccEEEEEEec-CCeE-EEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEE
Q 013717          230 WDKSLKIWRASDLRCLE-SIK-AHEDAVNAVAVSA-GGTV-YTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALAL  305 (437)
Q Consensus       230 ~dg~i~iwd~~~~~~~~-~~~-~~~~~v~~~~~~~-~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~  305 (437)
                      ..+.|+..++....... .+. ..-..+.+++|.+ ++.| ++-...+.|..+++.....    ...+...-..+..+++
T Consensus       324 ~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~----~~v~~~~~~~p~GlAv  399 (619)
T 3s94_A          324 RRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS----QFVVTAQIAHPDGIAV  399 (619)
T ss_dssp             ESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEECSSCSCCCEEEE
T ss_pred             cccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc----EEEEECCCCCcCceEE
Confidence            45678888886654211 111 1234578899998 4554 4445678899888764321    1112222345678899


Q ss_pred             ccCCC-EEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC--CEEEEEeC--CCcEEEeeCCCCCCeeeee
Q 013717          306 SDDGT-VLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLLMSGSA--DRTVRIWQRGSDGRFGCLA  380 (437)
Q Consensus       306 ~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~--dg~i~iwd~~~~~~~~~~~  380 (437)
                      .+.++ +.++-...+.|.+.++..... ..+.   ...-.....++.++  ..|+....  .+.|...++.....   ..
T Consensus       400 D~~~~~lY~tD~~~~~I~v~~~~G~~~-~~l~---~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~---~~  472 (619)
T 3s94_A          400 DWVARNLYWTDTGTDRIEVTRLNGTMR-KILI---SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR---VV  472 (619)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSC-EEEE---CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EE
T ss_pred             ecccCcEEEEeCCCCcEEEEeCCCCeE-EEEE---ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc---EE
Confidence            87444 555555678899999876432 2222   11233456666664  34444432  35676666664331   11


Q ss_pred             eecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          381 VLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       381 ~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      .....-...+.|++.++++    ++.++=+..+.|...+++..
T Consensus       473 l~~~~l~~P~GlalD~~~~----~LY~aD~~~~~I~~~~~dG~  511 (619)
T 3s94_A          473 LVNTSLGWPNGLALDYDEG----KIYWGDAKTDKIEVMNTDGT  511 (619)
T ss_dssp             EECSSCSCEEEEEEETTTT----EEEEEETTTTEEEEEESSSC
T ss_pred             EEeCCCCCCeeeEEcccCC----EEEEEECCCCEEEEEecCCC
Confidence            2233345678999998665    25555555677888887654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.69  E-value=3.4  Score=40.14  Aligned_cols=197  Identities=8%  Similarity=0.072  Sum_probs=100.4

Q ss_pred             eeCCEEEEEec----C-eEEEEeCCCCceeeee-ccc--cCCCCcccEEEEEEe-CCe-EEEEecC------CeEEEEeC
Q 013717          106 VHHNFLYAASS----H-EINVYDRTGTTWTSIN-TFN--DNDSSSGSVKSVTFC-DGK-IFTAHQD------CKIRVWQL  169 (437)
Q Consensus       106 ~~~~~l~s~~~----d-~v~vwd~~~~~~~~~~-~~~--~~~~h~~~v~~l~~~-~~~-l~s~~~d------g~i~iwd~  169 (437)
                      ..+..++.|+.    - .+.+||..++.|..+. .+.  ........-..+.+. ++. ++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            33566666663    2 7899999998888776 311  001111222233332 555 6666643      34777887


Q ss_pred             CCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe-CCCeEEEEECCC--cEEEEECCCcceEE
Q 013717          170 TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV-NNGLIYSVSWDK--SLKIWRASDLRCLE  246 (437)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg--~i~iwd~~~~~~~~  246 (437)
                      .+.+-... ..++.                           ....-.++.+ ....++.|+.++  .+.+||..+.+-..
T Consensus       476 ~t~~W~~~-~~~p~---------------------------~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~  527 (695)
T 2zwa_A          476 KTREWSMI-KSLSH---------------------------TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKD  527 (695)
T ss_dssp             TTTEEEEC-CCCSB---------------------------CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEE
T ss_pred             CCCcEEEC-CCCCC---------------------------CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEE
Confidence            76543222 11110                           1111223333 447777777654  68999998765332


Q ss_pred             Ee-----ecccccEEEEEEecC-Ce-EEEEeC--C-----CeEEEecCCCCcc----cceeeEEeeCccccEEEEEEccC
Q 013717          247 SI-----KAHEDAVNAVAVSAG-GT-VYTGSA--D-----RKIRVWAKPFNEK----RHALIATLEKHKSAVNALALSDD  308 (437)
Q Consensus       247 ~~-----~~~~~~v~~~~~~~~-~~-l~~~~~--d-----g~v~iwd~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~  308 (437)
                      .-     ........++.+..+ ++ ++.|+.  +     +.+.+||+..+.-    .+..+.........-.++....+
T Consensus       528 ~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~  607 (695)
T 2zwa_A          528 VTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITP  607 (695)
T ss_dssp             CCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEET
T ss_pred             ccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCC
Confidence            21     111122233555554 66 666765  2     4688898875541    12222221111111112333334


Q ss_pred             CCEEEEEeC--------CCcEEEEECCCCc
Q 013717          309 GTVLFSGAC--------DRSILVWDREDSA  330 (437)
Q Consensus       309 ~~~l~~~~~--------dg~i~i~d~~~~~  330 (437)
                      +++++.|+.        ...|.+||+.+.+
T Consensus       608 ~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          608 RKLLIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             TEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             CEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence            677777764        3458899987654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=94.40  E-value=3.7  Score=39.29  Aligned_cols=194  Identities=12%  Similarity=0.067  Sum_probs=108.6

Q ss_pred             cEEEEEeCC--CeEEEEE-CCCcEEEEECCCcceEEEeec------ccccEEEEEEecCCe--EEEEeCCCeEEEecCCC
Q 013717          214 AVTGLAVNN--GLIYSVS-WDKSLKIWRASDLRCLESIKA------HEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPF  282 (437)
Q Consensus       214 ~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~  282 (437)
                      .+.++++++  +.|+.+. ..+.|+.++.........+..      ....+..|++...+.  +++-+..+.|.+.+++.
T Consensus       341 ~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G  420 (628)
T 4a0p_A          341 NVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG  420 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCC
Confidence            355677765  4555444 346677776654332222221      234678999988755  45666788999998753


Q ss_pred             CcccceeeEEeeCccccEEEEEEcc-CCCEEEEEeCCC--cEEEEECCCCccceEEeeeecccccceEEEEee--CCEEE
Q 013717          283 NEKRHALIATLEKHKSAVNALALSD-DGTVLFSGACDR--SILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLM  357 (437)
Q Consensus       283 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~  357 (437)
                      ..    ....+.........|++.| .|.++++-....  .|...++.... ...+..   ..-.....++.+  .+.|+
T Consensus       421 ~~----~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~-~~~l~~---~~l~~P~gla~D~~~~~LY  492 (628)
T 4a0p_A          421 RS----VGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTE-REVLFF---SGLSKPIALALDSRLGKLF  492 (628)
T ss_dssp             CE----EEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCS-CEEEEC---SSCSCEEEEEEETTTTEEE
T ss_pred             Ce----EEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCC-cEEEEe---ccCCCccEEEEeCCCCEEE
Confidence            21    1112223446789999999 555555533222  57777776433 222221   122344566666  34555


Q ss_pred             EE-eCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          358 SG-SADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       358 ~~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      .+ +..+.|..+++....+. .+  .........+|+...+      .++++=...+.|...+..+++
T Consensus       493 w~D~~~~~I~~~~~dG~~r~-~~--~~~~~~~P~glav~~~------~ly~tD~~~~~i~~~~k~~G~  551 (628)
T 4a0p_A          493 WADSDLRRIESSDLSGANRI-VL--EDSNILQPVGLTVFEN------WLYWIDKQQQMIEKIDMTGRE  551 (628)
T ss_dssp             EEETTTTEEEEEETTSCSCE-EE--ECSSCSCEEEEEEETT------EEEEEETTTTEEEEEETTSSS
T ss_pred             EEeCCCCEEEEEeCCCCceE-EE--EcCCCCCcEEEEEECC------EEEEEECCCCeEEEEECcCCC
Confidence            45 44678999998754421 11  1133344677777653      256666666777777766554

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=93.87  E-value=2.6  Score=35.58  Aligned_cols=224  Identities=11%  Similarity=0.108  Sum_probs=124.9

Q ss_pred             CCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCccccc
Q 013717           99 LPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKL  177 (437)
Q Consensus        99 ~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  177 (437)
                      ..|..++.-....+.-. + .|..|-....-..-+.     ......|..|+......+.-. ||.|..|-.........
T Consensus        24 ~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p-----~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~   96 (282)
T 3qhy_B           24 SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMP-----AATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV   96 (282)
T ss_dssp             SSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCC-----GGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC
T ss_pred             CCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCC-----ccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC
Confidence            46777776644433335 6 9999987652110111     112346788887777633334 99999998765432211


Q ss_pred             ccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEeecccccEEE
Q 013717          178 KTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNA  257 (437)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  257 (437)
                      ..                              .-...|..++......+... ||.|..|-....-.+..-......|..
T Consensus        97 P~------------------------------~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~  145 (282)
T 3qhy_B           97 PA------------------------------EARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTA  145 (282)
T ss_dssp             CG------------------------------GGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEE
T ss_pred             Cc------------------------------ccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEE
Confidence            10                              01246888888776666666 999999976542211111123445777


Q ss_pred             EEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEee
Q 013717          258 VAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTG  337 (437)
Q Consensus       258 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  337 (437)
                      ++...+..++. . ||.|..|-.........+    ......|..++...+  +.++- .||.|+.|-.....+..... 
T Consensus       146 i~~G~~~~~~l-~-~G~v~~wG~n~~gqlg~p----~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~-  215 (282)
T 3qhy_B          146 LDGGVYTALAV-K-NGGVIAWGDNYFGQTTVP----AEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPT-  215 (282)
T ss_dssp             EEECSSEEEEE-E-TTEEEEEECCTTSTTSCC----GGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCG-
T ss_pred             EEcccCEEEEE-E-CCEEEEecCCCCCCCCCc----eecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCc-
Confidence            76654333443 3 799999954322211111    112356777776544  33333 59999999876543322111 


Q ss_pred             eecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717          338 ALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       338 ~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~  374 (437)
                         .....|..++......++-. ||.|+.|-.....
T Consensus       216 ---~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~g  248 (282)
T 3qhy_B          216 ---EALSGVSAIASGEWYSLALK-NGKVIAWGSSRTA  248 (282)
T ss_dssp             ---GGGSSCCEEEECSSCEEEEE-TTEEEEESTTCCC
T ss_pred             ---ccCCCceEEEcCCCEEEEEE-CCEEEEecCCCCc
Confidence               11234666666555444444 9999999766544

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=93.40  E-value=3.8  Score=35.92  Aligned_cols=70  Identities=6%  Similarity=0.048  Sum_probs=41.3

Q ss_pred             CCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC-----eEEEEec-C-----CeE
Q 013717           99 LPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG-----KIFTAHQ-D-----CKI  164 (437)
Q Consensus        99 ~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~l~s~~~-d-----g~i  164 (437)
                      ..-..++|.  |+++++ ..+ .|.+++  .+....+..+............|+++++     .|+.+.. .     +.|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            345688887  665554 555 899998  3333333332211223467899999986     3444433 2     567


Q ss_pred             EEEeCCC
Q 013717          165 RVWQLTP  171 (437)
Q Consensus       165 ~iwd~~~  171 (437)
                      ..++...
T Consensus       108 ~r~~~~~  114 (352)
T 2ism_A          108 VRLRHLG  114 (352)
T ss_dssp             EEEEECS
T ss_pred             EEEEeCC
Confidence            7777664

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=92.62  E-value=4.9  Score=35.17  Aligned_cols=63  Identities=14%  Similarity=0.180  Sum_probs=35.0

Q ss_pred             CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          353 AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       353 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      +.++++.-..+.|...++..++.......+......+..|++.|++.    .|+++-..+|  +||.+.
T Consensus       289 g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~----lyv~td~~~g--~I~ri~  351 (353)
T 2g8s_A          289 QKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY----LYVLTDESSG--ELLKVS  351 (353)
T ss_dssp             TEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC----EEEEECSTTE--EEEEEE
T ss_pred             CcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc----EEEEEeCCCC--EEEEEe
Confidence            44666666677788887775331111112223345799999999884    2333332344  566654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=91.54  E-value=8  Score=35.25  Aligned_cols=63  Identities=8%  Similarity=0.096  Sum_probs=40.1

Q ss_pred             cccEEEEEEecCCeEEEEeCCC-eEEEecCCCCcccceeeEEeeC------ccccEEEEEEccC---CCEEEEEe
Q 013717          252 EDAVNAVAVSAGGTVYTGSADR-KIRVWAKPFNEKRHALIATLEK------HKSAVNALALSDD---GTVLFSGA  316 (437)
Q Consensus       252 ~~~v~~~~~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~---~~~l~~~~  316 (437)
                      -...+.|+|.|+|+|+++...+ .|++++.....  ...+..+..      ....+..|+|+|+   +.+|....
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~--~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~   98 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGS--VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG   98 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC--EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCc--EeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence            3457799999999977777775 68888653222  122222221      2456789999995   55555544

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=90.94  E-value=8.2  Score=34.29  Aligned_cols=284  Identities=12%  Similarity=0.101  Sum_probs=138.8

Q ss_pred             ccccccccCCCceeEEecCCCcceee-----------eec-CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCC-c----
Q 013717           67 SVPSLQKLSPDETINFSSASHLCINS-----------VQL-GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGT-T----  128 (437)
Q Consensus        67 ~~~~~~s~s~dg~i~~~~~~~~~~~~-----------~~~-~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~-~----  128 (437)
                      ..+.++.+..||++..|=.+...++-           ... -....|..++......+.-..+ .|..|-.... .    
T Consensus         9 ~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g   88 (389)
T 3kci_A            9 SGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIG   88 (389)
T ss_dssp             ------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSS
T ss_pred             CcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCC
Confidence            45567778889999998664433211           000 1122455555556666666666 9999975431 0    


Q ss_pred             ----eeeeeccccCCCCcccEEEEEEe--CCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEee
Q 013717          129 ----WTSINTFNDNDSSSGSVKSVTFC--DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRR  202 (437)
Q Consensus       129 ----~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (437)
                          ......+..  .....+..+.++  ....+.-..||.|..|-......+-.-....               ..   
T Consensus        89 ~~~~~~~p~~v~~--~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~---------------~~---  148 (389)
T 3kci_A           89 GTESVSTPTLLES--IQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSP---------------CD---  148 (389)
T ss_dssp             SSCCEEEEEECGG--GTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCC---------------EE---
T ss_pred             CcCCccCCEEccc--ccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCcc---------------Cc---
Confidence                011111110  122334445554  3346667889999999765422111100000               00   


Q ss_pred             ccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCc-c--------e--EEEee-cccccEEEEEEecC-CeEEEE
Q 013717          203 HKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDL-R--------C--LESIK-AHEDAVNAVAVSAG-GTVYTG  269 (437)
Q Consensus       203 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~-~--------~--~~~~~-~~~~~v~~~~~~~~-~~l~~~  269 (437)
                      ....+-.-....|..++......+....+|.|..|-.... +        .  ...+. .....|..++.... ...++-
T Consensus       149 ~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l  228 (389)
T 3kci_A          149 RPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCL  228 (389)
T ss_dssp             EEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEE
T ss_pred             CCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEE
Confidence            0000000123468888887777788889999999975321 1        0  11111 12345777766542 336666


Q ss_pred             eCCCeEEEecCCCCcc------cc-eeeEEeeC-ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccc-------eE
Q 013717          270 SADRKIRVWAKPFNEK------RH-ALIATLEK-HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANH-------MV  334 (437)
Q Consensus       270 ~~dg~v~iwd~~~~~~------~~-~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~  334 (437)
                      ..+|.|..|-......      .. .....+.. ....|..++..  ..+.++-..||.|+.|-.....+.       ..
T Consensus       229 ~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~  306 (389)
T 3kci_A          229 TDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVR  306 (389)
T ss_dssp             ETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEE
T ss_pred             ccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCcccc
Confidence            7899999994321111      00 11111111 12246666654  335555678999999976431110       01


Q ss_pred             Eeeeecc-cccceEEEEeeCCEEEEEeCCCcEEEeeCCC
Q 013717          335 VTGALRG-HGKAILCLINVAGLLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       335 ~~~~~~~-~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~  372 (437)
                      ....... ....|..++......++-..||.|+.|-...
T Consensus       307 ~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~  345 (389)
T 3kci_A          307 RPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDND  345 (389)
T ss_dssp             EEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred             CCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCC
Confidence            1111111 2235677777666777778999999997654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=90.32  E-value=8.6  Score=33.50  Aligned_cols=242  Identities=13%  Similarity=0.088  Sum_probs=120.9

Q ss_pred             cccEEEEEEeCCe-EEEEec-CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEE
Q 013717          142 SGSVKSVTFCDGK-IFTAHQ-DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA  219 (437)
Q Consensus       142 ~~~v~~l~~~~~~-l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  219 (437)
                      -.....|+|.++. ++.+.. .|.|++++..+++.. .+..++                       .++.........|+
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~~~~-----------------------~v~~~g~~GllGia   86 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELGEVP-----------------------GVSPSGEGGLLGIA   86 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECT-----------------------TCCCBTTBSEEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eecccC-----------------------ceeecCCCCceeeE
Confidence            3467899999776 666666 899999986554321 111110                       01112455678899


Q ss_pred             eCC-----CeEEEEE---CCCcEEEEECCCc----------ceEE-Eee-cccccEEEEEEecCCeEEEE-e--------
Q 013717          220 VNN-----GLIYSVS---WDKSLKIWRASDL----------RCLE-SIK-AHEDAVNAVAVSAGGTVYTG-S--------  270 (437)
Q Consensus       220 ~~~-----~~l~~~~---~dg~i~iwd~~~~----------~~~~-~~~-~~~~~v~~~~~~~~~~l~~~-~--------  270 (437)
                      ++|     ..|+...   .++.|.-|.+..+          +.+. .+. .....-..|+|.|||.|..+ +        
T Consensus        87 ~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~  166 (347)
T 3das_A           87 LSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLS  166 (347)
T ss_dssp             ECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGT
T ss_pred             eccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccc
Confidence            987     4455432   3455666665441          1111 121 11223456999999994443 2        


Q ss_pred             -----CCCeEEEecCCCCccc-----ceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCccc-------
Q 013717          271 -----ADRKIRVWAKPFNEKR-----HALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSANH-------  332 (437)
Q Consensus       271 -----~dg~v~iwd~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~-------  332 (437)
                           ..|.|.-++.......     ...+. -.++ .....++|+|+|++.++=. .|+.=.|.-+..+..-       
T Consensus       167 qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~-a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g  244 (347)
T 3das_A          167 QDRKSLGGKILRMTPDGEPAPGNPFPGSPVY-SYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEG  244 (347)
T ss_dssp             TCTTCSTTCEEEECTTSSBCTTCSSTTCCEE-EBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCS
T ss_pred             cCCCCCCCEEEEEeCCCCccCCCCCCCCeEE-eeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccC
Confidence                 1355555554422100     00111 1233 3456899999887655432 2322222222222110       


Q ss_pred             -------eEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCC-eeeeeeecCCCCCeeEEEEEccCCCCce
Q 013717          333 -------MVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGR-FGCLAVLEGHTKPVKSLTAVTEEGQNGV  403 (437)
Q Consensus       333 -------~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~~~  403 (437)
                             ......+..+......+.+... ++...-..+.|....+..... .+....+.+....+.+|+..|++.    
T Consensus       245 ~~~~~~~~~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~----  320 (347)
T 3das_A          245 KGGGSGFHDPVAQWSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDK----  320 (347)
T ss_dssp             SCCCTTCCCCSEEECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTE----
T ss_pred             CCCCccccCCcEecCCCCCCCcceEEEcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCc----
Confidence                   0001111112234456666655 444444455666666654321 112233445567899999999984    


Q ss_pred             EEEEEecCCC
Q 013717          404 VSVFSGSLDG  413 (437)
Q Consensus       404 ~~l~s~~~dg  413 (437)
                      .|+++-..||
T Consensus       321 lyv~td~~~g  330 (347)
T 3das_A          321 LWLVTSNTDG  330 (347)
T ss_dssp             EEEEECTTSS
T ss_pred             EEEEEcCCCC
Confidence            2444444454

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=89.85  E-value=9.4  Score=33.25  Aligned_cols=170  Identities=13%  Similarity=0.083  Sum_probs=87.5

Q ss_pred             eecccccEEEEEEecCCeEEEEeC-CCeEEEecCCCCcccceeeEEe----eCccccEEEEEEccC---CCEEEEE---e
Q 013717          248 IKAHEDAVNAVAVSAGGTVYTGSA-DRKIRVWAKPFNEKRHALIATL----EKHKSAVNALALSDD---GTVLFSG---A  316 (437)
Q Consensus       248 ~~~~~~~v~~~~~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~---~~~l~~~---~  316 (437)
                      +...-...+.|+|.|+|.++++.. .|.|++++.....  ...+..+    .........|+++|+   +.+|+..   .
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~--~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~  104 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR--KTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA  104 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC--EEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc--EeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence            333445678999999999777776 8999999754322  1222221    223567899999995   3444443   2


Q ss_pred             CCCcEEEEECCCCc-------cceEEeeee---cccccceEEEEeeCCEEEEEeC-------------CCcEEEeeCCCC
Q 013717          317 CDRSILVWDREDSA-------NHMVVTGAL---RGHGKAILCLINVAGLLMSGSA-------------DRTVRIWQRGSD  373 (437)
Q Consensus       317 ~dg~i~i~d~~~~~-------~~~~~~~~~---~~~~~~i~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~  373 (437)
                      .++.|.-|.+....       ....+...+   ..|...-..+..++.++++.+.             .|.|.-.+....
T Consensus       105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~  184 (347)
T 3das_A          105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE  184 (347)
T ss_dssp             SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred             CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence            45567667665421       111222212   2455544555555655454332             244444444321


Q ss_pred             ----CCe-eeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          374 ----GRF-GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       374 ----~~~-~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                          ..+ .......+|.+ ...++|.|++.    .++.--+.|+.=.|-.+..+.
T Consensus       185 ip~~nPf~~~~i~a~G~RN-p~Gla~dp~G~----L~~~d~g~~~~deln~i~~G~  235 (347)
T 3das_A          185 PAPGNPFPGSPVYSYGHRN-VQGLAWDDKQR----LFASEFGQDTWDELNAIKPGD  235 (347)
T ss_dssp             BCTTCSSTTCCEEEBCCSB-CCEEEECTTCC----EEEEECCSSSCEEEEEECTTC
T ss_pred             ccCCCCCCCCeEEeeCCCC-cceEEECCCCC----EEEEecCCCCCceeeEEcCCC
Confidence                000 01112235544 45889999653    222233445444555554443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=89.07  E-value=14  Score=34.43  Aligned_cols=95  Identities=11%  Similarity=0.109  Sum_probs=61.6

Q ss_pred             cEEEEECCC----cceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCc---------ccceeeEEeeCcc
Q 013717          233 SLKIWRASD----LRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNE---------KRHALIATLEKHK  297 (437)
Q Consensus       233 ~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~---------~~~~~~~~~~~~~  297 (437)
                      .+.+.|.+.    +..+..+-.-......+.++|||+  ++.|-.+.++.++|++.-.         .........+ ..
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~G  377 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LG  377 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CC
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CC
Confidence            467777765    322222223344556788999999  5556668999999886311         1111222333 34


Q ss_pred             ccEEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 013717          298 SAVNALALSDDGTVLFSGACDRSILVWDRED  328 (437)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  328 (437)
                      -.....+|.++|+...+--.|..|..|++..
T Consensus       378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             SCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred             CcccEEEECCCCceEeeeeecceEEEEeccH
Confidence            5678899999996566666899999999864

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}

Probab=86.97  E-value=17  Score=32.65  Aligned_cols=280  Identities=9%  Similarity=0.017  Sum_probs=147.8

Q ss_pred             ccccCCCceeEEecCCCcce-----------eeeecCccCCeEEEEeeCCEEEEEecC-eEEEEeCCCC-cee---ee--
Q 013717           71 LQKLSPDETINFSSASHLCI-----------NSVQLGHKLPIGCIAVHHNFLYAASSH-EINVYDRTGT-TWT---SI--  132 (437)
Q Consensus        71 ~~s~s~dg~i~~~~~~~~~~-----------~~~~~~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~-~~~---~~--  132 (437)
                      .+.+..+|.+..|=.+...+           ....+..-..|..++.-+.+.+.-..+ .|..|-.... .+-   ..  
T Consensus        36 ~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~  115 (423)
T 3mvd_K           36 PKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDG  115 (423)
T ss_dssp             CCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTT
T ss_pred             ceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCc
Confidence            34456788888885432111           111113334576776666666666667 9999976541 000   00  


Q ss_pred             -eccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeC--CCCcccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717          133 -NTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQL--TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI  209 (437)
Q Consensus       133 -~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (437)
                       ......-.....|..|+......+.-..||.|..|-.  .....+-......  .                  ...+..
T Consensus       116 ~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~--~------------------~~p~~~  175 (423)
T 3mvd_K          116 SESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGN--K------------------RTPIDL  175 (423)
T ss_dssp             SSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBC--E------------------EEEEES
T ss_pred             cccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCC--C------------------ceeeEe
Confidence             0000000123467777777777667788999999985  3221111000000  0                  000001


Q ss_pred             cCCCcEEEEEeCCCeEEEEECCCcEEEEECCCc-----------------------ceEEEeecccccEEEEEEecCCeE
Q 013717          210 EHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDL-----------------------RCLESIKAHEDAVNAVAVSAGGTV  266 (437)
Q Consensus       210 ~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~-----------------------~~~~~~~~~~~~v~~~~~~~~~~l  266 (437)
                      .....|..++......+....+|.|..|-....                       .+..........|..++......+
T Consensus       176 ~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~  255 (423)
T 3mvd_K          176 MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTF  255 (423)
T ss_dssp             STTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEE
T ss_pred             cCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEE
Confidence            234568888887778888889999999964321                       111111122335666665533225


Q ss_pred             EEEeCCCeEEEecCCCCcc-------cceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCc--------c
Q 013717          267 YTGSADRKIRVWAKPFNEK-------RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSA--------N  331 (437)
Q Consensus       267 ~~~~~dg~v~iwd~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~  331 (437)
                      +.-..+|.|..|-......       ..............|..|+..  ..+.++-..||.|+.|-.....        .
T Consensus       256 ~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G--~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~  333 (423)
T 3mvd_K          256 MRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGG--QHHTVILTTDLKCSVVGRPEYGRLGLGDVKD  333 (423)
T ss_dssp             EEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEEC--SSEEEEEETTCCEEEEECCGGGTTCSSSCCS
T ss_pred             EEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcc--cCeEEEEeCCCcEEEEECCCCCCCCCCCccc
Confidence            5556889999995332110       001111111113456666654  3455666789999999754211        1


Q ss_pred             ceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCC
Q 013717          332 HMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       332 ~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~  372 (437)
                      ..........-...|..++.-....++-..||.|+.|-...
T Consensus       334 ~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~G~v~~wG~n~  374 (423)
T 3mvd_K          334 VVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGV  374 (423)
T ss_dssp             CEEEEEECTTCCSCEEEEEEETTEEEEEETTSCEEEEECCT
T ss_pred             cccCceEeccCCCCEEEEEcCCCeEEEEcCCCCEEEECCCC
Confidence            01111122222236777877777666678999999997654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=86.73  E-value=18  Score=32.86  Aligned_cols=105  Identities=10%  Similarity=0.127  Sum_probs=60.5

Q ss_pred             CCcEEEEEeCC-CeEEEEECCC-cEEEEECCCcceEE--Eeec------ccccEEEEEEec----CCeEEEEeC------
Q 013717          212 GDAVTGLAVNN-GLIYSVSWDK-SLKIWRASDLRCLE--SIKA------HEDAVNAVAVSA----GGTVYTGSA------  271 (437)
Q Consensus       212 ~~~v~~~~~~~-~~l~~~~~dg-~i~iwd~~~~~~~~--~~~~------~~~~v~~~~~~~----~~~l~~~~~------  271 (437)
                      -.....|++.+ ..|+++...+ .|++++..+++...  .+..      ....+..|+++|    ++.|.+...      
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            34567999988 5566666665 69888865554322  2211      245678999999    455444432      


Q ss_pred             -------CCeEEEecCCCCcc---cce-eeEEeeC-ccccEEEEEEccCCCEEEEEe
Q 013717          272 -------DRKIRVWAKPFNEK---RHA-LIATLEK-HKSAVNALALSDDGTVLFSGA  316 (437)
Q Consensus       272 -------dg~v~iwd~~~~~~---~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~~~~  316 (437)
                             ...|.-|++..+..   ..+ ++..+.. .......|+|.|||++.++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                   23555555432211   111 2222221 123478999999998777644

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=86.70  E-value=16  Score=32.29  Aligned_cols=253  Identities=15%  Similarity=0.126  Sum_probs=129.6

Q ss_pred             cEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC--
Q 013717          144 SVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN--  221 (437)
Q Consensus       144 ~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--  221 (437)
                      .|..|+......+.-..||.|..|-......+-.-....               ...   ...+-......+..+++.  
T Consensus        54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~---------------~~~---p~~v~~~~~~~~~~v~i~~G  115 (389)
T 3kci_A           54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTES---------------VST---PTLLESIQHVFIKKVAVNSG  115 (389)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCC---------------EEE---EEECGGGTTSCEEEEEECTT
T ss_pred             ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCC---------------ccC---CEEcccccCCceeEEEECcC
Confidence            466666666667777889999999765432111100000               000   000000122234444443  


Q ss_pred             CCeEEEEECCCcEEEEECCCc-----------ceEEEeec-ccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcc----
Q 013717          222 NGLIYSVSWDKSLKIWRASDL-----------RCLESIKA-HEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEK----  285 (437)
Q Consensus       222 ~~~l~~~~~dg~i~iwd~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----  285 (437)
                      ....+....||.|..|-....           .....+.. ....|..++.. ....++...+|.|..|-.....+    
T Consensus       116 ~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G-~~hs~alt~~G~v~~wG~n~~GqLG~~  194 (389)
T 3kci_A          116 GKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG-GAHSACVTAAGDLYTWGKGRYGRLGHS  194 (389)
T ss_dssp             CSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC-SSEEEEEETTSCEEEEECCGGGTTCSS
T ss_pred             CCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC-cCeEEEEeCCCeEEEeCCCCCCCcCCC
Confidence            367777789999999965321           01111111 12256666654 22355567799999995321110    


Q ss_pred             --cce-eeEEee-CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccc-------eEEeeeecc-cccceEEEEeeC
Q 013717          286 --RHA-LIATLE-KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANH-------MVVTGALRG-HGKAILCLINVA  353 (437)
Q Consensus       286 --~~~-~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~-~~~~i~~~~~~~  353 (437)
                        ... ....+. .....|..++......+.++-..||.|+.|-.....+.       ......... ....|..++.-.
T Consensus       195 ~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~  274 (389)
T 3kci_A          195 DSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS  274 (389)
T ss_dssp             SCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET
T ss_pred             CCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC
Confidence              000 011111 12235667766543356677778999999975431110       011111111 123467777777


Q ss_pred             CEEEEEeCCCcEEEeeCCCCCC---------eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717          354 GLLMSGSADRTVRIWQRGSDGR---------FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       354 ~~l~~~~~dg~i~iwd~~~~~~---------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                      ...++-..||.|+.|-.....+         ..+..........|..|+.-..       ..+....||.|+.|=-..
T Consensus       275 ~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~-------h~~al~~~G~v~~wG~n~  345 (389)
T 3kci_A          275 QFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSL-------HCVCCTEDGEVYTWGDND  345 (389)
T ss_dssp             TEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSS-------EEEEEETTCCEEEEECCT
T ss_pred             CEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccC-------eEEEECCCCCEEEeeCCC
Confidence            7777778999999997543110         0111111112235667665443       355567899999997653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=86.59  E-value=16  Score=31.93  Aligned_cols=75  Identities=12%  Similarity=0.100  Sum_probs=47.3

Q ss_pred             cccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeE----EeeCccccEEEEEEccC---CCEEEEEeC------
Q 013717          252 EDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIA----TLEKHKSAVNALALSDD---GTVLFSGAC------  317 (437)
Q Consensus       252 ~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~---~~~l~~~~~------  317 (437)
                      -.....|+|.|+|+ ++++...|.|++++.....  ...+.    ...........|+++|+   +..|+....      
T Consensus        17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~--~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g   94 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGL--SAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG   94 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEE--CCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred             CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCce--eeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence            34578999999999 9999999999999743211  01111    11122456789999996   445554432      


Q ss_pred             --CCcEEEEECCC
Q 013717          318 --DRSILVWDRED  328 (437)
Q Consensus       318 --dg~i~i~d~~~  328 (437)
                        ...|..|++..
T Consensus        95 ~~~~~v~r~~~~~  107 (353)
T 2g8s_A           95 KAGTAVGYGRLSD  107 (353)
T ss_dssp             CEEEEEEEEEECT
T ss_pred             CceeEEEEEEECC
Confidence              23566677654

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}

Probab=85.88  E-value=19  Score=32.27  Aligned_cols=253  Identities=8%  Similarity=0.027  Sum_probs=133.0

Q ss_pred             ccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC
Q 013717          143 GSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN  222 (437)
Q Consensus       143 ~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  222 (437)
                      ..|..|+......+.-..||.|..|-......+-.-..........                  ........|..++...
T Consensus        75 ~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P------------------~~v~~~~~i~~va~G~  136 (423)
T 3mvd_K           75 PDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKP------------------DLIDLPGKALCISAGD  136 (423)
T ss_dssp             SSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSC------------------EECCCSSCEEEEEECS
T ss_pred             CCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCC------------------eEEcCCCCEEEEEcCc
Confidence            3477777777777777889999999765432211110000000000                  0001234677888777


Q ss_pred             CeEEEEECCCcEEEEEC--C-Ccce--------EEEee-cccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcc-----
Q 013717          223 GLIYSVSWDKSLKIWRA--S-DLRC--------LESIK-AHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEK-----  285 (437)
Q Consensus       223 ~~l~~~~~dg~i~iwd~--~-~~~~--------~~~~~-~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-----  285 (437)
                      ...+....||.|..|-.  . .+++        ..... .....|..|+.. ....++-..+|.|..|-.....+     
T Consensus       137 ~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G-~~hs~alt~~G~v~~wG~n~~GqLG~~~  215 (423)
T 3mvd_K          137 SHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG-ADHLVILTTAGKVFTVGCAEQGQLGRLS  215 (423)
T ss_dssp             SEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC-SSEEEEEETTSCEEEEECCTTSTTSSCC
T ss_pred             CeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC-CCeEEEEecCCeEEEeeCCcCCccCCCc
Confidence            77777889999999985  2 2221        01111 123456666653 22355567889999994321110     


Q ss_pred             --------------cceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccc-------eEEeeeeccccc
Q 013717          286 --------------RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANH-------MVVTGALRGHGK  344 (437)
Q Consensus       286 --------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~~~~  344 (437)
                                    ...+..........|..++.... ..++.-..+|.|+.|-.....+.       ............
T Consensus       216 ~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~  294 (423)
T 3mvd_K          216 ERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELK  294 (423)
T ss_dssp             TTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCC
T ss_pred             ccccccccccccccccCCeEEeecCCccEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCC
Confidence                          00111111122334556555422 22333357899999975431110       001111111134


Q ss_pred             ceEEEEeeCCEEEEEeCCCcEEEeeCCCCC---------CeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcE
Q 013717          345 AILCLINVAGLLMSGSADRTVRIWQRGSDG---------RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEI  415 (437)
Q Consensus       345 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  415 (437)
                      .|..++.-....+.-..||.|+.|-.....         .......+..-...|..|+.-..       ..+.-..||.|
T Consensus       295 ~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~-------hs~alt~~G~v  367 (423)
T 3mvd_K          295 DIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV-------CSYAVTIDGKL  367 (423)
T ss_dssp             SEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT-------EEEEEETTSCE
T ss_pred             CeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC-------eEEEEcCCCCE
Confidence            567777666777777889999999653211         01112222222336888876654       34445789999


Q ss_pred             EEEeecc
Q 013717          416 RAWQVSV  422 (437)
Q Consensus       416 ~iw~~~~  422 (437)
                      +.|=...
T Consensus       368 ~~wG~n~  374 (423)
T 3mvd_K          368 YSWGSGV  374 (423)
T ss_dssp             EEEECCT
T ss_pred             EEECCCC
Confidence            9997543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=85.88  E-value=3.3  Score=38.42  Aligned_cols=76  Identities=13%  Similarity=0.088  Sum_probs=47.8

Q ss_pred             ccccEEEEEEccCCCEEEEEeC-CCcEEEEECCCCcc---------ceEEeeeecccccceEEEEeeCC--EEEEEeCCC
Q 013717          296 HKSAVNALALSDDGTVLFSGAC-DRSILVWDREDSAN---------HMVVTGALRGHGKAILCLINVAG--LLMSGSADR  363 (437)
Q Consensus       296 ~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~---------~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg  363 (437)
                      -......+.++|||+++++++. +.++.++|++....         ...+..... -....+...|+++  ...+---|.
T Consensus       321 ~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidS  399 (638)
T 3sbq_A          321 VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDS  399 (638)
T ss_dssp             ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTT
T ss_pred             CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecc
Confidence            3445677899999999887664 88999999974110         011111111 1223355556554  455556799


Q ss_pred             cEEEeeCCC
Q 013717          364 TVRIWQRGS  372 (437)
Q Consensus       364 ~i~iwd~~~  372 (437)
                      .|.-|++..
T Consensus       400 qvvkWni~~  408 (638)
T 3sbq_A          400 QVVKWNMEE  408 (638)
T ss_dssp             EEEEEEHHH
T ss_pred             eEEEEeccH
Confidence            999999864

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=83.63  E-value=36  Score=34.46  Aligned_cols=36  Identities=22%  Similarity=0.412  Sum_probs=29.6

Q ss_pred             cEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee
Q 013717          214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK  249 (437)
Q Consensus       214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~  249 (437)
                      .+.+++..+  .++++.+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            455665554  799999999999999999999988764

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=80.68  E-value=33  Score=31.25  Aligned_cols=55  Identities=7%  Similarity=0.078  Sum_probs=36.5

Q ss_pred             ccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEee---------CccccEEEEEEccC
Q 013717          253 DAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLE---------KHKSAVNALALSDD  308 (437)
Q Consensus       253 ~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~  308 (437)
                      ..-+.|+|.|++.  ++++...|.|++++...... ...+..+.         ........|+|+|+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~-~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF-KEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC-SSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCee-eeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            4567899999985  88889999999997532211 11111111         11456889999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	437
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-15
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-12
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	9e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.002
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.004
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.001
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.001
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	6e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-04
d1zyba2	147	b.82.3.2 (A:1-147) Probable transcription regulato	0.002

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.6 bits (205), Expect = 2e-18
 Identities = 51/324 (15%), Positives = 100/324 (30%), Gaps = 38/324 (11%)

Query: 96  GHKLPIGCIAVHHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKI 155
           GH   I  +    +     S+                       S  G +          
Sbjct: 53  GHLAKIYAMHWGTDSRLLVSA-----------------------SQDGKLIIWDSYTTNK 89

Query: 156 FTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV 215
             A       V                   D +       +     R  ++L    G   
Sbjct: 90  VHAIPLRSSWVMTCAY--APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS 147

Query: 216 TGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY-TGSADRK 274
               +++  I + S D +  +W     +   +   H   V +++++    ++ +G+ D  
Sbjct: 148 CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS 207

Query: 275 IRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMV 334
            ++W    + +      T   H+S +NA+    +G    +G+ D +  ++D       M 
Sbjct: 208 AKLW----DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263

Query: 335 VTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTA 394
            +      G   +       LL++G  D    +W            VL GH   V  L  
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK---ADRAGVLAGHDNRVSCL-G 319

Query: 395 VTEEGQNGVVSVFSGSLDGEIRAW 418
           VT++G     +V +GS D  ++ W
Sbjct: 320 VTDDGM----AVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.8 bits (164), Expect = 4e-13
 Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 9/123 (7%)

Query: 208 WIEHGDAVTGLAV--NNGLIYSVSWDKSLKI--WRASDLRCLESIKAHEDAVNAVAVSAG 263
           +  H   +  +    N     + S D + ++   RA       S       + +V+ S  
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281

Query: 264 G-TVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSIL 322
           G  +  G  D    VW    +  +      L  H + V+ L ++DDG  + +G+ D  + 
Sbjct: 282 GRLLLAGYDDFNCNVW----DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337

Query: 323 VWD 325
           +W+
Sbjct: 338 IWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 7e-04
 Identities = 33/240 (13%), Positives = 69/240 (28%), Gaps = 56/240 (23%)

Query: 241 DLRCLESIKAHEDAVNAVAVSA-GGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSA 299
            +R   +++ H   + A+        + + S D K+ +W      K H     +    S 
Sbjct: 44  QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH----AIPLRSSW 99

Query: 300 VNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA------ 353
           V   A +  G  +  G  D    +++ +    ++ V+  L GH   + C   +       
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159

Query: 354 -------------------------------------GLLMSGSADRTVRIWQRGSDGRF 376
                                                 L +SG+ D + ++W        
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE---G 216

Query: 377 GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSSPLNLQKWN 436
            C     GH   + ++      G     +  +GS D   R + +       +  +     
Sbjct: 217 MCRQTFTGHESDINAI-CFFPNGN----AFATGSDDATCRLFDLRADQELMTYSHDNIIC 271

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.8 bits (195), Expect = 3e-17
 Identities = 56/316 (17%), Positives = 109/316 (34%), Gaps = 55/316 (17%)

Query: 96  GHKLPIGCIAVHHNFLYAASS---HEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD 152
           GH+ P+  +  H  F    S+     I V+D    T     T       + SV+ ++F  
Sbjct: 15  GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE--TGDFERTLK---GHTDSVQDISFDH 69

Query: 153 GKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI--- 209
                A     + +          ++T     ++     ++PN    V   + K      
Sbjct: 70  SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129

Query: 210 -------------EHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVN 256
                             +     +  LI S S D+++++W  +   C   ++ H   V 
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189

Query: 257 AVAV---------------------SAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEK 295
            ++                        G  + +GS D+ I++W    +      + TL  
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW----DVSTGMCLMTLVG 245

Query: 296 HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI--NVA 353
           H + V  +     G  + S A D+++ VWD ++          L  H   +  L     A
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN----KRCMKTLNAHEHFVTSLDFHKTA 301

Query: 354 GLLMSGSADRTVRIWQ 369
             +++GS D+TV++W+
Sbjct: 302 PYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.0 bits (193), Expect = 6e-17
 Identities = 69/317 (21%), Positives = 114/317 (35%), Gaps = 55/317 (17%)

Query: 142 SGSVKSVTFC-DGK-IFTAHQDCKIRVWQL-TPTKHHKLKTTLPTVNDRLLRFMLPNSYV 198
              V  V F      + +A +D  I+VW   T      LK    +V D            
Sbjct: 17  RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 76

Query: 199 TVRRHKKKLWIE-------------HGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCL 245
                  KLW               H  +   +  N   I S S DK++K+W      C+
Sbjct: 77  CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 136

Query: 246 ESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALA 304
           ++   H + V  V  +  GT + + S D+ +RVW            A L +H+  V  ++
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW----VVATKECKAELREHRHVVECIS 192

Query: 305 L--------------------SDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGK 344
                                   G  L SG+ D++I +WD       M     L GH  
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT----LVGHDN 248

Query: 345 AILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNG 402
            +  ++  +G   ++S + D+T+R+W   +     C+  L  H   V SL    +     
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKR---CMKTLNAHEHFVTSL-DFHKTAP-- 302

Query: 403 VVSVFSGSLDGEIRAWQ 419
              V +GS+D  ++ W+
Sbjct: 303 --YVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.1 bits (157), Expect = 2e-12
 Identities = 36/208 (17%), Positives = 81/208 (38%), Gaps = 15/208 (7%)

Query: 75  SPDETINFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAAS-SHEINVYDRTGTTWTSIN 133
           S D+TI               GH+  +  +  + +    AS S++  V      T     
Sbjct: 120 SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 179

Query: 134 TFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFML 193
              ++      V+ +++     +++  +      + +      L +      D+ ++   
Sbjct: 180 ELREH---RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG---SRDKTIKMWD 233

Query: 194 PNSYVTVRRHKKKLWIEHGDAVTGLAV--NNGLIYSVSWDKSLKIWRASDLRCLESIKAH 251
            ++ + +        + H + V G+        I S + DK+L++W   + RC++++ AH
Sbjct: 234 VSTGMCLMT-----LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 288

Query: 252 EDAVNAVAVSA-GGTVYTGSADRKIRVW 278
           E  V ++        V TGS D+ ++VW
Sbjct: 289 EHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (107), Expect = 5e-06
 Identities = 36/176 (20%), Positives = 73/176 (41%), Gaps = 15/176 (8%)

Query: 247 SIKAHEDAVNAVAVSA-GGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALAL 305
           ++  H   V  V        + + S D  I+VW    + +      TL+ H  +V  ++ 
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW----DYETGDFERTLKGHTDSVQDISF 67

Query: 306 SDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTV 365
              G +L S + D +I +WD +       + G    H  + + ++     ++S S D+T+
Sbjct: 68  DHSGKLLASCSADMTIKLWDFQGFECIRTMHG--HDHNVSSVSIMPNGDHIVSASRDKTI 125

Query: 366 RIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
           ++W+  +     C+    GH + V+ +    +        + S S D  +R W V+
Sbjct: 126 KMWEVQT---GYCVKTFTGHREWVRMVRPNQDGTL-----IASCSNDQTVRVWVVA 173

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 286 RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKA 345
           R      L  H+S V  +      +V+ S + D +I VWD E           L+GH  +
Sbjct: 6   RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT----LKGHTDS 61

Query: 346 ILCL 349
           +  +
Sbjct: 62  VQDI 65

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.6 bits (184), Expect = 1e-15
 Identities = 63/362 (17%), Positives = 125/362 (34%), Gaps = 63/362 (17%)

Query: 67  SVPSLQKLSPDETI---NFSSASHLCINSVQ-LGHKLPIGCIAVHHNFLYAASSHEINVY 122
           SVP   K   ++     N +    + +   + L H   + C+   ++  Y A+       
Sbjct: 27  SVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQ 86

Query: 123 DRTGTTWTSINTFNDND---------------SSSGSVKSVTFC-DGKIF-------TAH 159
               +  + +   +D+                SS   ++SV F  DGK            
Sbjct: 87  VYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIR 146

Query: 160 QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRH--------KKKLWIEH 211
                    +   + H+             + +  +   TVR                + 
Sbjct: 147 IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG 206

Query: 212 GDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRC-------LESIKAHEDAVNAVAVSAGG 264
              V     +   I + S D+++++W +             ES   H+D+V +V  +  G
Sbjct: 207 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 266

Query: 265 -TVYTGSADRKIRVW--------AKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG 315
            +V +GS DR +++W        +            T   HK  V ++A + +   + SG
Sbjct: 267 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 326

Query: 316 ACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--------LLMSGSADRTVRI 367
           + DR +L WD++     ++    L+GH  +++ +    G        +  +GS D   RI
Sbjct: 327 SKDRGVLFWDKKSGNPLLM----LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382

Query: 368 WQ 369
           W+
Sbjct: 383 WK 384

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 1e-12
 Identities = 52/293 (17%), Positives = 93/293 (31%), Gaps = 33/293 (11%)

Query: 96  GHKLPIGCIAVHHNFLYAASS-HEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK 154
                + C+      + +    + I ++D+   T         +   +GSV  + + D +
Sbjct: 13  ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKN--TLECKRILTGH---TGSVLCLQY-DER 66

Query: 155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLW------ 208
           +                T                LRF         +     +W      
Sbjct: 67  VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT 126

Query: 209 --------IEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAV 260
                   + H  AV  +  ++  I S S D+++K+W  S    + ++  H+  +  +  
Sbjct: 127 DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY 186

Query: 261 SAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRS 320
                V +GS+D  IR+W          L    E  +          D   + SGA D  
Sbjct: 187 R-DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF------DNKRIVSGAYDGK 239

Query: 321 ILVWDREDSANHMVVTGA-----LRGHGKAILCLINVAGLLMSGSADRTVRIW 368
           I VWD   + +     G      L  H   +  L      ++S S D T+ IW
Sbjct: 240 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (149), Expect = 2e-11
 Identities = 64/306 (20%), Positives = 111/306 (36%), Gaps = 35/306 (11%)

Query: 131 SINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQL-TPTKHHKLKTTLPTVNDRLL 189
           S+   +    +S  V  + + D KI +  +D  I++W   T      L     +V     
Sbjct: 4   SLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63

Query: 190 RFMLP---------NSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRAS 240
              +            +           I H +AV  L  NNG++ + S D+S+ +W  +
Sbjct: 64  DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123

Query: 241 DLRCLESIKAHE--DAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKS 298
               +   +      A   V       + + S DR I+VW    N      + TL  HK 
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW----NTSTCEFVRTLNGHKR 179

Query: 299 AVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMS 358
            +    L     ++ SG+ D +I +WD E  A   V+     GH + + C+      ++S
Sbjct: 180 GIA--CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE----GHEELVRCIRFDNKRIVS 233

Query: 359 GSADRTVRIWQRGSDGRFG------CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD 412
           G+ D  +++W   +           CL  L  H+  V     +  +       + S S D
Sbjct: 234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV---FRLQFDEF----QIVSSSHD 286

Query: 413 GEIRAW 418
             I  W
Sbjct: 287 DTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (130), Expect = 5e-09
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 8/123 (6%)

Query: 208 WIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY 267
              H   +  L   + L+ S S D ++++W      CL  ++ HE+ +          + 
Sbjct: 174 LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVRCIRFDNKRIV 232

Query: 268 TGSADRKIRVW-----AKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSIL 322
           +G+ D KI+VW       P        + TL +H   V  L    D   + S + D +IL
Sbjct: 233 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTIL 290

Query: 323 VWD 325
           +WD
Sbjct: 291 IWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 6e-07
 Identities = 43/212 (20%), Positives = 72/212 (33%), Gaps = 18/212 (8%)

Query: 210 EHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTG 269
           E    V  L  ++  I S   D ++KIW  + L C   +  H  +V  +       +   
Sbjct: 13  ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGS 72

Query: 270 SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDS 329
           S                  +                  +  ++ + + DRSI VWD    
Sbjct: 73  SDSTVRVWDVNTGEMLNTLIHHCEAVLHL-------RFNNGMMVTCSKDRSIAVWDMASP 125

Query: 330 ANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPV 389
            +  +    L GH  A+  +      ++S S DRT+++W   +      +  L GH + +
Sbjct: 126 TDITLRRV-LVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTST---CEFVRTLNGHKRGI 181

Query: 390 KSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
                     Q     V SGS D  IR W + 
Sbjct: 182 A-------CLQYRDRLVVSGSSDNTIRLWDIE 206

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 33/164 (20%), Positives = 56/164 (34%), Gaps = 27/164 (16%)

Query: 75  SPDETINFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAASS-HEINVYDRTGTTWTSIN 133
           S D TI   + S         GHK  I C+      + + SS + I ++D        + 
Sbjct: 155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVL 214

Query: 134 TFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFML 193
             ++       V+ + F + +I +   D KI+VW L      +       +         
Sbjct: 215 EGHEE-----LVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL--------- 260

Query: 194 PNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIW 237
                       +  +EH   V  L  +   I S S D ++ IW
Sbjct: 261 ------------RTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 6e-11
 Identities = 31/297 (10%), Positives = 82/297 (27%), Gaps = 32/297 (10%)

Query: 95  LGHKLPIGCIAVHHN--FLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC- 151
           L H   +  + + +    +Y      + V+D +     S  +  D  +    ++S     
Sbjct: 48  LNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 152 DGKIFTA-----------------HQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLP 194
           DG                          ++               +    +      +  
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167

Query: 195 NSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDA 254
                    ++      G +   ++ +   +++   D +++ W   + R           
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ-LQQHDFTSQ 226

Query: 255 VNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFS 314
           + ++     G       +             ++     L  H+S V +L  +  G    S
Sbjct: 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY----QLHLHESCVLSLKFAYCGKWFVS 282

Query: 315 GACDRSILVWDREDSANHMVVTGALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQ 369
              D  +  W     A+             ++L   I+V    +++GS D+   +++
Sbjct: 283 TGKDNLLNAWRTPYGASIFQS-----KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 9e-07
 Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 2/111 (1%)

Query: 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVW-AKPF 282
                  D  +        R + ++  H + V AV +S             ++VW     
Sbjct: 24  QPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHP 82

Query: 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHM 333
             K            + + +  L  DG  L  G    ++ +WD       +
Sbjct: 83  GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 3/74 (4%)

Query: 277 VWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSAN-HMVV 335
               P   +    I TL  H   V A+ +S+    +++G     + VWD     N   V 
Sbjct: 32  ALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVS 89

Query: 336 TGALRGHGKAILCL 349
                     I   
Sbjct: 90  QLDCLNRDNYIRSC 103

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.4 bits (139), Expect = 5e-10
 Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 5/122 (4%)

Query: 247 SIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALS 306
           +++ H  +V          V TG+ D+ IRV+    +      +  L  H   V AL  +
Sbjct: 7   TLRGHMTSVITCLQFEDNYVITGADDKMIRVY----DSINKKFLLQLSGHDGGVWALKYA 62

Query: 307 DDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVR 366
             G  L SG+ DR++ VWD +      V  G         +        +++GS D T+ 
Sbjct: 63  HGGI-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 121

Query: 367 IW 368
           +W
Sbjct: 122 VW 123

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 2e-08
 Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 211 HGDAV-TGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTG 269
           H  +V T L   +  + + + DK ++++ + + + L  +  H+  V A+  + GG + +G
Sbjct: 11  HMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSG 70

Query: 270 SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDS 329
           S DR +RVW     +     +            +    +   + +G+ D ++ VW     
Sbjct: 71  STDRTVRVW--DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 128

Query: 330 AN 331
           ++
Sbjct: 129 SS 130

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 14/136 (10%), Positives = 31/136 (22%), Gaps = 2/136 (1%)

Query: 150 FCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI 209
             D  I     +    ++ L           L                     + +K   
Sbjct: 220 SMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSY 279

Query: 210 EHGDAVTGLAV-NNGLIYSVSWDKSLKIWRASDLRCLES-IKAHEDAVNAVAVSAGGTVY 267
            H +         +  I     +    I+     + + + I    D + +V       V 
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVA 339

Query: 268 TGSADRKIRVWAKPFN 283
               D +  +    F+
Sbjct: 340 AVEKDGQSFLEILDFS 355

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 5e-05
 Identities = 37/311 (11%), Positives = 79/311 (25%), Gaps = 49/311 (15%)

Query: 96  GHKLPIGCIAVHH-NFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK 154
           GH   +  +   H   L + S+              +      N +              
Sbjct: 51  GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY 110

Query: 155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA 214
           I T  +D  + VW+L                           +V V          H  +
Sbjct: 111 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV-------LRGHMAS 163

Query: 215 VTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAV-NAVAVSAGGTVYTGSADR 273
           V  ++ +  ++ S S+D +L +W  + ++CL  +  H D + + +         + S D 
Sbjct: 164 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 223

Query: 274 KIR-----------------------------------VWAKPFNEKRHALIATLEKHKS 298
            IR                                     +    +           H +
Sbjct: 224 TIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTN 283

Query: 299 AVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCL-INVAGLLM 357
                       +L SG+ +    +++        +V   +      I  +      L+ 
Sbjct: 284 LSAITTFYVSDNILVSGS-ENQFNIYNLRSGK---LVHANILKDADQIWSVNFKGKTLVA 339

Query: 358 SGSADRTVRIW 368
           +   D    + 
Sbjct: 340 AVEKDGQSFLE 350

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 1e-09
 Identities = 45/311 (14%), Positives = 105/311 (33%), Gaps = 25/311 (8%)

Query: 75  SPDETINFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAASSHEINVYDRTGTTWTSINT 134
           S D T+   SA         +GH   +    +  N +                   +   
Sbjct: 34  SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIII----SGSTDRTLKVWNAETGEC 89

Query: 135 FNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTK------HHKLKTTLPTVNDRL 188
            +     + +V+ +   + ++ +  +D  +RVW +   +       H         + R 
Sbjct: 90  IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR 149

Query: 189 LRFMLPNSYVTVRRHKKKLWI----EHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRC 244
           +     +  V V   + +  +     H + V  L  +   + S S D S+++W      C
Sbjct: 150 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC 209

Query: 245 LESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALA 304
           + ++  H+   + + +     + +G+AD  +++W          L      +K       
Sbjct: 210 IHTLTGHQSLTSGMELK-DNILVSGNADSTVKIWDIKTG---QCLQTLQGPNKHQSAVTC 265

Query: 305 LSDDGTVLFSGACDRSILVWDREDSAN-HMVVTGALRGHGKAILCLI--NVAGLLMSGSA 361
           L  +   + + + D ++ +WD +       +VT    G G  +  +   N   +   GS 
Sbjct: 266 LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR 325

Query: 362 DRT----VRIW 368
           + T    + + 
Sbjct: 326 NGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 59/330 (17%), Positives = 107/330 (32%), Gaps = 62/330 (18%)

Query: 142 SGSVKS-VTFCDGKIFTAHQDCKIRVWQL-------TPTKHHKLKTTL---PTVNDRLLR 190
              V + + FC  +I +   D  ++VW         T   H     +      +      
Sbjct: 16  DDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGST 75

Query: 191 FMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWD------------------- 231
                 +             H   V  + ++   + S S D                   
Sbjct: 76  DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMG 135

Query: 232 ---------------------KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGS 270
                                  +K+W      CL +++ H + V ++    G  V +GS
Sbjct: 136 HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD-GIHVVSGS 194

Query: 271 ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSA 330
            D  IRVW    + +    I TL  H+S  + + L D+  +L SG  D ++ +WD +   
Sbjct: 195 LDTSIRVW----DVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQ 248

Query: 331 NHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLE--GHTKP 388
               + G    H  A+ CL      +++ S D TV++W   +      L  LE  G    
Sbjct: 249 CLQTLQGP-NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307

Query: 389 VKSLTAVTEEGQNGVVSVFSGSLDGEIRAW 418
           V  +   +       V   +G+ + ++   
Sbjct: 308 VWRI-RASNTKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 2e-09
 Identities = 55/222 (24%), Positives = 81/222 (36%), Gaps = 56/222 (25%)

Query: 237 WRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKH 296
           WR  +L+  + +K H+D V       G  + +GS D  ++VW    +      + TL  H
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW----SAVTGKCLRTLVGH 56

Query: 297 KSAVNALALSDD--------------------------------------GTVLFSGACD 318
              V +  + D+                                         + SG+ D
Sbjct: 57  TGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRD 116

Query: 319 RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGC 378
            ++ VWD E      V    L GH  A+ C+      ++SG+ D  V++W         C
Sbjct: 117 ATLRVWDIETGQCLHV----LMGHVAAVRCVQYDGRRVVSGAYDFMVKVW---DPETETC 169

Query: 379 LAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
           L  L+GHT  V SL             V SGSLD  IR W V
Sbjct: 170 LHTLQGHTNRVYSLQFDGIH-------VVSGSLDTSIRVWDV 204

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.8 bits (135), Expect = 2e-09
 Identities = 53/366 (14%), Positives = 109/366 (29%), Gaps = 59/366 (16%)

Query: 100 PIGCIAVHHN---FLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC--DGK 154
           PI C A + +        ++HE+++Y+++G  W  ++   ++   +G V  V +     +
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH---NGQVTGVDWAPDSNR 65

Query: 155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVT-------------VR 201
           I T   D    VW L           L            PN                   
Sbjct: 66  IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 202 RHKKKLWIEHGDAVTGLAVN-------NGLIYSVSWDKSLKIWRASDLR----------- 243
           +       +H        V        + L+ + S D   +I+ A               
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185

Query: 244 -------CLESIKAHEDAVNAVAVSAGGTVYT-GSADRKIRVWAKPFNEKRHALIATLEK 295
                   +    +    V+ V  SA G+     S D  + +              TL  
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA----TLAS 241

Query: 296 HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGL 355
               + A+    + +++ +G  D   +++  + +A  +   G L    ++      +   
Sbjct: 242 ETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQR--GLTAR 298

Query: 356 LMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEI 415
               + D+        + G      +   H   V  + +V   G+       +  +DG +
Sbjct: 299 ERFQNLDKKASSEGSAAAGA----GLDSLHKNSVSQI-SVLSGGKAKCSQFCTTGMDGGM 353

Query: 416 RAWQVS 421
             W V 
Sbjct: 354 SIWDVR 359

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.4 bits (134), Expect = 3e-09
 Identities = 14/119 (11%), Positives = 38/119 (31%), Gaps = 3/119 (2%)

Query: 251 HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG 309
             + ++  A +   T +     + ++ ++    +  +   +  L++H   V  +  + D 
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYE--KSGNKWVQVHELKEHNGQVTGVDWAPDS 63

Query: 310 TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIW 368
             + +   DR+  VW  +       +           +           GS  R + I 
Sbjct: 64  NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 122

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 29/163 (17%), Positives = 53/163 (32%), Gaps = 9/163 (5%)

Query: 213 DAVTGLAVN--NGLIYSVSWDKSLKIWRASD--LRCLESIKAHEDAVNAVAVSA-GGTVY 267
           + ++  A N     I     +  + I+  S      +  +K H   V  V  +     + 
Sbjct: 8   EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 67

Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
           T   DR   VW       +      + +   A   +  + +      G+  R I +   E
Sbjct: 68  TCGTDRNAYVWTLKGRTWKP--TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 328 DSANHMVVTGALRGHGKAILCL--INVAGLLMSGSADRTVRIW 368
              +  V     +     +L L     + LL +GS D   RI+
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 168

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (132), Expect = 4e-09
 Identities = 40/352 (11%), Positives = 96/352 (27%), Gaps = 41/352 (11%)

Query: 96  GHKLPIGCIAVHHNFLYAASS-HEINVYD-RTGTTWTSINTFNDNDSSSGSVKSVTFCDG 153
            H   I  ++  ++F  + S    + V+D +        +    +      +  V     
Sbjct: 12  AHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71

Query: 154 ---------KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHK 204
                     + T      +  +++T     + K  +    D L   M  +S+  ++   
Sbjct: 72  IERDAFELCLVATTSFSGDLLFYRITRED--ETKKVIFEKLDLLDSDMKKHSFWALKWGA 129

Query: 205 KKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDL-------RCLESIKAHEDAVNA 257
               +     V         I+              +          +ES         +
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189

Query: 258 VAVSAGGTVYTGSADRKIRVW--AKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG 315
           V +S  G + TG  +  +++   +            ++  + +++ ++  S  G++L   
Sbjct: 190 VDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 249

Query: 316 ACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--------------LLMSGSA 361
               S       ++     +         +   L   A                L S   
Sbjct: 250 HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW 309

Query: 362 DRTVRIWQRGSDGRFG-CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD 412
           D  +R W    D +    +  L  H   ++    +    ++G      G  D
Sbjct: 310 DGKLRFW----DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 357

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 34/335 (10%), Positives = 83/335 (24%), Gaps = 64/335 (19%)

Query: 132 INTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRF 191
           I T N   +    + SV+ C+    +   D  ++VW      +   K             
Sbjct: 4   IATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDK----------- 52

Query: 192 MLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNG---LIYSVSWDKSLKIWRASDLRCLESI 248
                  +      K  + H D +  +  +     L+ + S+   L  +R +     + +
Sbjct: 53  -------SYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKV 105

Query: 249 KAHED----------AVNAVAVSAGG------TVYTGSADRKIRVW-------------- 278
              +           +  A+   A         +          +W              
Sbjct: 106 IFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165

Query: 279 AKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILV----WDREDSANHMV 334
                 +    + +         ++ +S+ G  + +G  + ++ +      R        
Sbjct: 166 NWSPTLELQGTVESPMTPSQFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQ 224

Query: 335 VTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTA 394
            +     +    +       LL       +              +  L   T   ++   
Sbjct: 225 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG 284

Query: 395 VTEEGQNGVVSVFS--------GSLDGEIRAWQVS 421
                   +   F+           DG++R W V 
Sbjct: 285 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 319

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 34/270 (12%), Positives = 73/270 (27%), Gaps = 33/270 (12%)

Query: 106 VHHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC-DGKIFTAHQDCKI 164
            +    +  +    ++      T     T     + S    SV     G I T   +  +
Sbjct: 148 TYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTV 207

Query: 165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGL 224
           ++ +L+  +      +  ++          NS  +V+   +   +               
Sbjct: 208 QISELSTLRPLYNFESQHSMI------NNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY 261

Query: 225 IYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY-TGSADRKIRVWAKPFN 283
                             +      AH   V +++ +  G    +   D K+R W    +
Sbjct: 262 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW----D 317

Query: 284 EKRHALIATLEKHKSAV----NALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGAL 339
            K    I TL  H   +    + LA+ + G  L          +     S          
Sbjct: 318 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSG--------- 368

Query: 340 RGHGKAILCLINVAGLLMSGSADRTVRIWQ 369
                      ++   L     DR++R ++
Sbjct: 369 --------MGADLNESLCCVCLDRSIRWFR 390

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 54.5 bits (129), Expect = 9e-09
 Identities = 36/374 (9%), Positives = 89/374 (23%), Gaps = 51/374 (13%)

Query: 67  SVPS--LQKLSPD--ETINFSSASHLCI------NSVQLGHKLPIGCIAVHHN--FLYAA 114
           S+PS   +  SP   + I F S     I        +++   L I  +    +    +  
Sbjct: 1   SIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIH 60

Query: 115 SSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKH 174
                    R G            D  +G  +      G +F    D   +   +   + 
Sbjct: 61  G-------TREGDFLGIY------DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRF 107

Query: 175 HKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSL 234
             +   L T    ++                  +I +G                   +++
Sbjct: 108 EIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGF------PLKHGETDGYVMQAI 161

Query: 235 KIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVW---AKPFNEKRHALIA 291
            ++     +   +   +         +    +Y  S              F+ +  +   
Sbjct: 162 HVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPF 221

Query: 292 TLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLIN 351
            +     + N   L        +G  D + +                +     +IL    
Sbjct: 222 VIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSV 281

Query: 352 VAG-----LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSV 406
                             +  +   +         +      +  L  ++ + +    +V
Sbjct: 282 PVHGEFAAYYQGAPEKGVLLKYDVKT-------RKVTEVKNNLTDL-RLSADRK----TV 329

Query: 407 FSGSLDGEIRAWQV 420
                DG+I  + +
Sbjct: 330 MVRKDDGKIYTFPL 343

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.3 bits (123), Expect = 4e-08
 Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 1/90 (1%)

Query: 190 RFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWR-ASDLRCLESI 248
                       +     W           +   L+ + S D ++ I+     ++ ++++
Sbjct: 195 EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL 254

Query: 249 KAHEDAVNAVAVSAGGTVYTGSADRKIRVW 278
            AH+D VN +      T+ +  AD  I+ W
Sbjct: 255 NAHKDGVNNLLWETPSTLVSSGADACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.1 bits (120), Expect = 9e-08
 Identities = 33/288 (11%), Positives = 80/288 (27%), Gaps = 29/288 (10%)

Query: 96  GHKLPIGCIAVHHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKI 155
           GH   I  + V+   L + S      YD     W+S +   D+   S  + S+     + 
Sbjct: 11  GHNKGITALTVNP--LISGS------YDGRIMEWSSSSMHQDH---SNLIVSLDNSKAQE 59

Query: 156 FTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV 215
           +++                   +  + + N+     +L N    +        I     +
Sbjct: 60  YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL 119

Query: 216 TGLAV------NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTG 269
                      N   +     +       +      +         + +++S   T    
Sbjct: 120 NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA 179

Query: 270 SADRKIRVWAKPFNEKR--------HALIATLEKHKSAVNALALSDDGTVLFSGACDRSI 321
                  +     + +          + I  +    +   A     +  ++ +G+ D +I
Sbjct: 180 GDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNI 239

Query: 322 LVWDREDSANHMVVTGALRGHGKAILCL-INVAGLLMSGSADRTVRIW 368
            ++  +     +     L  H   +  L       L+S  AD  ++ W
Sbjct: 240 FIYSVKRPMKIIKA---LNAHKDGVNNLLWETPSTLVSSGADACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 1e-07
 Identities = 31/252 (12%), Positives = 66/252 (26%), Gaps = 20/252 (7%)

Query: 90  INSVQLGHKLPIGCIAVHHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVT 149
            +S+   H   I  +       Y++ S +  +     T     +      +++    +V 
Sbjct: 38  SSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVL 97

Query: 150 FCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI 209
             D  +          +  +         +         L          +   +    +
Sbjct: 98  TNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL 157

Query: 210 EH--GDAVTGLAVNNGLIYSV--------------SWDKSLKIWRASDLRCLESIKAHED 253
           +       + ++++    Y                S +     W     +         +
Sbjct: 158 KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAE 217

Query: 254 AVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLF 313
                       V TGS D  I +++    ++   +I  L  HK  VN L      T L 
Sbjct: 218 KGANEEEIEEDLVATGSLDTNIFIYSV---KRPMKIIKALNAHKDGVNNLLWETPST-LV 273

Query: 314 SGACDRSILVWD 325
           S   D  I  W+
Sbjct: 274 SSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 6e-07
 Identities = 38/290 (13%), Positives = 84/290 (28%), Gaps = 27/290 (9%)

Query: 142 SGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTK--HHKLKTTLPTVNDRLLRFMLPNSYVT 199
           +  + ++T     + +   D +I  W  +     H  L  +L     +    +  +  + 
Sbjct: 13  NKGITALTVN--PLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLK 70

Query: 200 VRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVA 259
           V    K  +       +  A N+G    ++ D  L I ++     ++S++ +        
Sbjct: 71  VNGITKHEFGSQPKVAS--ANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSL 128

Query: 260 VSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR 319
                  Y      +                      ++  + +++S   T + +G    
Sbjct: 129 SQ----NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMG 184

Query: 320 SILVWDREDSANHMVVTGALRGH---------GKAILCLINVAGLLMSGSADRTVRIWQR 370
            IL++D +                         K          L+ +GS D  + I+  
Sbjct: 185 KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 244

Query: 371 GSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
               +   +  L  H   V +L             + S   D  I+ W V
Sbjct: 245 KRPMK--IIKALNAHKDGVNNL-LWETPST-----LVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.6 bits (103), Expect = 1e-05
 Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 12/106 (11%)

Query: 243 RCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNA 302
             L++I  H   + A+ V+    + +GS D +I  W         +  +  + H + + +
Sbjct: 4   EVLKTISGHNKGITALTVN---PLISGSYDGRIMEW---------SSSSMHQDHSNLIVS 51

Query: 303 LALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILC 348
           L  S           D   +    +          +    G   + 
Sbjct: 52  LDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVL 97

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 2e-07
 Identities = 10/93 (10%), Positives = 34/93 (36%), Gaps = 2/93 (2%)

Query: 242 LRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAV 300
           ++ ++  +A +D ++ + +    + +   S D  + V+      K   L+ +L  +K  +
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPL 59

Query: 301 NALALSDDGTVLFSGACDRSILVWDREDSANHM 333
                 D+  +       +  ++      +   
Sbjct: 60  LCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF 92

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 2e-06
 Identities = 9/61 (14%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 289 LIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILC 348
           ++   +  K  ++ + +    ++L   + D S+ V+  +  A ++ +  +L  +   +LC
Sbjct: 3   IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-RYKHPLLC 61

Query: 349 L 349
            
Sbjct: 62  C 62

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 36/326 (11%), Positives = 89/326 (27%), Gaps = 27/326 (8%)

Query: 75  SPDETI---NFSSASHLCINSVQLGHKLPIGCIAVHHN---FLYAASSHEINVYDRTGTT 128
           S D ++    F   +        L +K P+ C     N    +Y  +     +      +
Sbjct: 30  SWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS 89

Query: 129 WTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRL 188
            +     N+  +           D  I  +       +              L + N ++
Sbjct: 90  PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKV 149

Query: 189 LRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESI 248
              +          +  +L +   ++     V    +     D           +  +  
Sbjct: 150 KNKIFTMDT-----NSSRLIVGMNNSQ----VQWFRLPLCEDDNGTIEESGLKYQIRDVA 200

Query: 249 KAHEDAVNAVAVSAGGTVYTGSADRKIRVW--AKPFNEKRHALIATLEKHKSAVNALALS 306
              ++       S  G V     D +   +  +K F  + H L          VN++  S
Sbjct: 201 LLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS 260

Query: 307 DDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVR 366
                L++   D  I  W+ +       +    + +  +++ +     +L   ++D T +
Sbjct: 261 PRHKFLYTAGSDGIISCWNLQ---TRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFK 317

Query: 367 IWQRGSDGRFGCLAVLEGHTKPVKSL 392
                          +E +   +  +
Sbjct: 318 TNAA-------IDQTIELNASSIYII 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 10/75 (13%), Positives = 26/75 (34%), Gaps = 7/75 (9%)

Query: 211 HGDAVTGLAV--NNGLIYSVSWDKSLKIWRASDLRCLESIKA---HEDAVNAVAVSA--G 263
             D ++ + +  +  L+   SWD SL +++         +     ++  +          
Sbjct: 10  PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69

Query: 264 GTVYTGSADRKIRVW 278
             +Y G+   +I   
Sbjct: 70  LQIYVGTVQGEILKV 84

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 2/57 (3%)

Query: 339 LRGHGKAILCL--INVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLT 393
            +     I  +  I    LL+  S D ++ +++     +   L     +  P+    
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 48.6 bits (114), Expect = 8e-07
 Identities = 21/226 (9%), Positives = 48/226 (21%), Gaps = 12/226 (5%)

Query: 107 HHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRV 166
               +YA  +    + D        +  F+  D              +++         +
Sbjct: 99  DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSL 158

Query: 167 ------WQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV 220
                       K  K    LP  N     +  P+          +        +     
Sbjct: 159 YVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD 218

Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKA-HEDAVNAVAVSAGGTVYTGSADRKIRVWA 279
           +     +               +      A   +       S            ++  + 
Sbjct: 219 DKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKY- 277

Query: 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD 325
              + K+  LI            +A    G  L+ G     + V++
Sbjct: 278 ---DLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFN 319

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 19/171 (11%), Positives = 48/171 (28%), Gaps = 7/171 (4%)

Query: 217 GLAV--NNGLIYSVSWDKSLKIWRASDLRCLESIK-AHEDAVNAVAVSA-GGTVY-TGSA 271
           G A+   +  +   ++  +L +   +     +S     +       ++    T Y   + 
Sbjct: 1   GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60

Query: 272 DRKIRVW--AKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDS 329
              I         N     L +   +   ++ + A+S DG  +++       L       
Sbjct: 61  YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 120

Query: 330 ANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLA 380
              + V     G     +    +   +    A     ++  G D     + 
Sbjct: 121 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVK 171

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.5 bits (108), Expect = 3e-06
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 288 ALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAIL 347
           ++      H  A+ AL+ S DG  LFS   +  I  WD     ++ V       H   I 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD---VHATMIT 59

Query: 348 CL-INVAGLLMSGSADRTVRIWQRGSDG 374
            +     G L + S D  +++   G  G
Sbjct: 60  GIKTTSKGDLFTVSWDDHLKVVPAGGSG 87

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.1 bits (99), Expect = 4e-05
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 225 IYSVSWDKSLKIW---RASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKP 281
           + + S D S+ +W   + SD   +        +VN+V      T+ +   D  I+ W  P
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298

Query: 282 F 282
           F
Sbjct: 299 F 299

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.3 bits (97), Expect = 7e-05
 Identities = 34/293 (11%), Positives = 76/293 (25%), Gaps = 19/293 (6%)

Query: 142 SGSVKSVTFC-DGK-IFTAHQDCKIRVWQL-TPTKHHKLKTTLPTVNDRLLRFMLPNSYV 198
           + ++ +++   DGK +F+A  +  I  W + T   +        T+   +      + + 
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT 71

Query: 199 TVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAV 258
                  K+    G  V         + S     ++       +       A        
Sbjct: 72  VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT 131

Query: 259 AVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTV------- 311
            V         +     +  A    + +  +        S V  +    + T        
Sbjct: 132 EVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG 191

Query: 312 ---LFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIW 368
              + +    + I      +       +        A +        L +GS D +V +W
Sbjct: 192 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 251

Query: 369 QRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
              +      + +   H     +      E       + S   D  I+ W V 
Sbjct: 252 NM-NKPSDHPIIIKGAHAMSSVNSVIWLNETT-----IVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.9 bits (96), Expect = 8e-05
 Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 211 HGDAVTGLAV--NNGLIYSVSWDKSLKIWRASDLRCLESI-KAHEDAVNAVAVSAGGTVY 267
           H  A+T L+   +   ++S   +  +  W  S           H   +  +  ++ G ++
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70

Query: 268 TGSADRKIRVWAKPFNEKRH 287
           T S D  ++V     +    
Sbjct: 71  TVSWDDHLKVVPAGGSGVDS 90

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.0 bits (91), Expect = 3e-04
 Identities = 43/297 (14%), Positives = 95/297 (31%), Gaps = 23/297 (7%)

Query: 90  INSVQLGHKLPIGCIAVHHNFLYAASS---HEINVYDRTGTTWTSINTFNDNDSSSGSVK 146
           I+ V+ GH   I  ++   +     S+     IN +D +  T  S   F D    +  + 
Sbjct: 4   IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS--TGISNRVFPD--VHATMIT 59

Query: 147 SVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPN---------- 195
            +       +FT   D  ++V     +     K     ++ + L   +            
Sbjct: 60  GIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY 119

Query: 196 ---SYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHE 252
              +  +  +  +     +   V        +       K      +           H 
Sbjct: 120 KHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHP 179

Query: 253 DAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVL 312
             + +VA S  G     +   +  +     N    A   +   H + V  ++ S D   L
Sbjct: 180 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 239

Query: 313 FSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIW 368
            +G+ D S++VW+    ++H ++         ++  +I +    ++S   D  ++ W
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIK-GAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.0 bits (91), Expect = 4e-04
 Identities = 18/128 (14%), Positives = 43/128 (33%), Gaps = 5/128 (3%)

Query: 243 RCLESIKAHEDAVNAVAVSA-GGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVN 301
              +    H  A+ A++ SA G T+++  A+  I  W               + H + + 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF---PDVHATMIT 59

Query: 302 ALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSA 361
            +  +  G +      D  + V     S        A +   + +   ++  G +   + 
Sbjct: 60  GIKTTSKGDLFTVSWDDH-LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 118

Query: 362 DRTVRIWQ 369
            + + I+ 
Sbjct: 119 YKHIAIYS 126

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 30/268 (11%), Positives = 63/268 (23%), Gaps = 19/268 (7%)

Query: 75  SPDETIN-FSSASHLCINSVQLGHKLPIGCIAVHHNFLYAASSHEINVYDRTGTTWTSIN 133
             +  IN +  ++ +        H   I  I           S + ++           +
Sbjct: 31  DAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDS 90

Query: 134 TFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFML 193
           +    +  S     +              K               +   +          
Sbjct: 91  SKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQF 150

Query: 194 PNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHED 253
                   +           +     V+   I SV++  +     A+D        +  +
Sbjct: 151 VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN 210

Query: 254 ----------------AVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHK 297
                                       + TGS D  + VW        H +I       
Sbjct: 211 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW-NMNKPSDHPIIIKGAHAM 269

Query: 298 SAVNALALSDDGTVLFSGACDRSILVWD 325
           S+VN++    + T + S   D +I  W+
Sbjct: 270 SSVNSVI-WLNETTIVSAGQDSNIKFWN 296

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.1 bits (107), Expect = 5e-06
 Identities = 8/62 (12%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVN----AVAVSAGGTVYTGSADRKIR 276
           ++    +V  D ++++W  +  +C++     +  +      V  +  G + + S D  + 
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321

Query: 277 VW 278
            +
Sbjct: 322 FY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 9e-04
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 308 DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA-GLLMSGSADRTVR 366
           D     +   D +I VWD   S      T   +  G   + ++    G ++S S D T+ 
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321

Query: 367 IW 368
            +
Sbjct: 322 FY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 7/66 (10%)

Query: 263 GGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALS---DDGTVLFSGACDR 319
                T  AD  IRVW    +      +      K  +    +         + S + D 
Sbjct: 263 SQKFATVGADATIRVW----DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318

Query: 320 SILVWD 325
           ++  ++
Sbjct: 319 TLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 355 LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGE 414
              +  AD T+R+W   +     C+       + + +         NG +   S SLDG 
Sbjct: 265 KFATVGADATIRVWDVTTSK---CVQKWTLDKQQLGNQQVGVVATGNGRI--ISLSLDGT 319

Query: 415 IRAWQV 420
           +  +++
Sbjct: 320 LNFYEL 325

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.9 bits (104), Expect = 9e-06
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAV--AVSAGGTVYTGSADRKIRVW 278
           +   I S S DK++KIW  + L+  ++I       +     +     + + SA+  I   
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 7/64 (10%)

Query: 355 LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGE 414
            + S SAD+T++IW   +         +   T+       +    Q    ++ S S +G 
Sbjct: 252 KIASASADKTIKIWNVAT---LKVEKTIPVGTRIEDQQLGIIWTKQ----ALVSISANGF 304

Query: 415 IRAW 418
           I   
Sbjct: 305 INFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 308 DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRI 367
           DGT + S + D++I +W+         +           L +I     L+S SA+  +  
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVG-TRIEDQQLGIIWTKQALVSISANGFINF 307

Query: 368 W 368
            
Sbjct: 308 V 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 8/79 (10%), Positives = 18/79 (22%), Gaps = 4/79 (5%)

Query: 255 VNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFS 314
              +  +  G          +                   +H         S  G    S
Sbjct: 20  AVVLGNTPAGDKIQYCNGTSVYTV----PVGSLTDTEIYTEHSHQTTVAKTSPSGYYCAS 75

Query: 315 GACDRSILVWDREDSANHM 333
           G    ++ +WD   + + +
Sbjct: 76  GDVHGNVRIWDTTQTTHIL 94

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 16/107 (14%), Positives = 26/107 (24%), Gaps = 9/107 (8%)

Query: 288 ALIATLEKHKSA-VNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI 346
           AL  +L +        L  +  G  +       S+         +  +       H    
Sbjct: 7   ALFPSLPRTARGTAVVLGNTPAGDKIQY-CNGTSVYTVPVGSLTDTEI----YTEHSHQT 61

Query: 347 LCLI--NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKS 391
                        SG     VRIW   +         +   + PVK 
Sbjct: 62  TVAKTSPSGYYCASGDVHGNVRIWDT-TQTTHILKTTIPVFSGPVKD 107

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.3 bits (100), Expect = 4e-05
 Identities = 15/224 (6%), Positives = 51/224 (22%), Gaps = 10/224 (4%)

Query: 102 GCIAVHHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQD 161
             +A++ + +    +H      R         +      +   +  + +           
Sbjct: 94  KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG 153

Query: 162 CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN 221
             + V         + K       +   +  +   +                       +
Sbjct: 154 RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATP-----FYTARKD 208

Query: 222 NGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKP 281
                  ++   L                  D                 A   +  +   
Sbjct: 209 IDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESF--- 265

Query: 282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD 325
            + +++A I  +     +  ++ +S DG+ ++ G     +  +D
Sbjct: 266 -DLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.5 bits (99), Expect = 6e-05
 Identities = 13/113 (11%), Positives = 33/113 (29%), Gaps = 4/113 (3%)

Query: 227 SVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG-TVYTGSADRKIRVW-AKPFNE 284
           ++     + +   S       +     AV+   +SA G  ++    D K+ +        
Sbjct: 37  TLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP 95

Query: 285 KRHALIATLEKHKSAVNALALSDDG-TVLFSGACDRSILVWDREDSANHMVVT 336
              A I    + +S   +     +    +         ++ D E      + +
Sbjct: 96  TTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 148

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 15/144 (10%), Positives = 39/144 (27%), Gaps = 3/144 (2%)

Query: 227 SVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG-TVYTGSADRKIRVW-AKPFNE 284
           ++     + +      + ++ I     AV+   +SA G  +     D +I +        
Sbjct: 37  TLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEP 95

Query: 285 KRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGK 344
            + A I    + +S  ++     +     +GA           ++     +         
Sbjct: 96  TKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD 155

Query: 345 AILCLINVAGLLMSGSADRTVRIW 368
                       +  S +    I 
Sbjct: 156 TQTYHPEPRVAAIIASHEHPEFIV 179

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 10/131 (7%), Positives = 28/131 (21%), Gaps = 2/131 (1%)

Query: 62  LQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAASSHEINV 121
             TL  +P  Q L  ++  +      L     + G  +           L      EI++
Sbjct: 5   FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGN--PCTQLCFLLKGEISI 62

Query: 122 YDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTL 181
                    ++    +                   +     ++    ++           
Sbjct: 63  VTNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRY 122

Query: 182 PTVNDRLLRFM 192
                  +  +
Sbjct: 123 DIFRLNYMNIV 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	437
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.98
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.9
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.86
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.86
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.83
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.81
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.81
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.81
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.77
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.77
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.69
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.69
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.67
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.61
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.4
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.29
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.29
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.18
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.13
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.1
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.96
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.96
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.92
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.88
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.84
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.82
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.74
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.74
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.74
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.71
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.69
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.63
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.61
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.53
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.4
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.35
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.01
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.01
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.88
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.85
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.71
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.58
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.51
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.45
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.31
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.29
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.28
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.19
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.15
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.15
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.04
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.92
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.89
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.57
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.41
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.29
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.18
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.95
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	95.69
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.58
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.57
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.1
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.75
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.3
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	93.18
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.57
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.35
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	90.94
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	87.49
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	86.23
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	85.15
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	81.98

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-41  Score=301.44  Aligned_cols=287  Identities=16%  Similarity=0.252  Sum_probs=237.9

Q ss_pred             cceeeeecCccCCeEEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCe
Q 013717           88 LCINSVQLGHKLPIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCK  163 (437)
Q Consensus        88 ~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~  163 (437)
                      ..+.+..++|...|.|++|+  |++||+|+++.|+|||+..+............+|.+.|.+++|+++.  |++++.||.
T Consensus        41 ~~~~~~~~~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~  120 (337)
T d1gxra_          41 HARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST  120 (337)
T ss_dssp             EEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred             CceEEEECCCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccc
Confidence            34556667999999999999  89999998559999999875333222222335799999999999765  999999999


Q ss_pred             EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCC
Q 013717          164 IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASD  241 (437)
Q Consensus       164 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~  241 (437)
                      |++||+........                            ..+..|...+.++++++  .++++++.|+.|++||+.+
T Consensus       121 i~iwd~~~~~~~~~----------------------------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~  172 (337)
T d1gxra_         121 LSIWDLAAPTPRIK----------------------------AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN  172 (337)
T ss_dssp             EEEEECCCC--EEE----------------------------EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             cccccccccccccc----------------------------cccccccccccccccccccccccccccccccccccccc
Confidence            99999875432111                            12246888999999988  7899999999999999999


Q ss_pred             cceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCc
Q 013717          242 LRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRS  320 (437)
Q Consensus       242 ~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  320 (437)
                      +++......|...|.+++|++++. +++++.||.+++||++...    .+..+ .+...|.+++|+|++++|++++.|+.
T Consensus       173 ~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~----~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~  247 (337)
T d1gxra_         173 QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR----QLQQH-DFTSQIFSLGYCPTGEWLAVGMESSN  247 (337)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE----EEEEE-ECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccce----eeccc-ccccceEEEEEcccccccceeccccc
Confidence            999988889999999999999998 9999999999999987543    44444 47889999999999999999999999


Q ss_pred             EEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccC
Q 013717          321 ILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEE  398 (437)
Q Consensus       321 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  398 (437)
                      +++||++.++..     ....|...|.++.++++  +|++|+.||.|++||+.+++   .+..+. |.+.|++++|+|++
T Consensus       248 i~i~d~~~~~~~-----~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~---~~~~~~-~~~~v~~~~~s~d~  318 (337)
T d1gxra_         248 VEVLHVNKPDKY-----QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA---SIFQSK-ESSSVLSCDISVDD  318 (337)
T ss_dssp             EEEEETTSSCEE-----EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---EEEEEE-CSSCEEEEEECTTS
T ss_pred             cccccccccccc-----cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCC---EEEEcc-CCCCEEEEEEeCCC
Confidence            999999876532     24568889999988755  99999999999999999876   555544 78899999999987


Q ss_pred             CCCceEEEEEecCCCcEEEEeec
Q 013717          399 GQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       399 ~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      .     +|++|+.||+|+|||+-
T Consensus       319 ~-----~l~t~s~D~~I~vWdl~  336 (337)
T d1gxra_         319 K-----YIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             C-----EEEEEETTSCEEEEEEE
T ss_pred             C-----EEEEEeCCCeEEEEEEE
Confidence            4     89999999999999973

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-39  Score=287.39  Aligned_cols=278  Identities=24%  Similarity=0.474  Sum_probs=242.0

Q ss_pred             eeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeE
Q 013717           91 NSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKI  164 (437)
Q Consensus        91 ~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i  164 (437)
                      ....| ||.++|++|+|+  +++|++|+.| .|+|||+.++  +.+..+   .+|...|.+++|+++.  +++++.++.+
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~--~~~~~~---~~h~~~V~~~~~~~~~~~~~~~~~~~~~   83 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTL---KGHTDSVQDISFDHSGKLLASCSADMTI   83 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC--CCCEEE---CCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--CEEEEE---eCCCCcEEEEeeeccccccccccccccc
Confidence            34567 999999999998  8999999999 9999999985  444455   5799999999999765  8899999999


Q ss_pred             EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc
Q 013717          165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL  242 (437)
Q Consensus       165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~  242 (437)
                      .+|+....+.....                              .+|...+.++.+++  +.+++++.|+.+++||++++
T Consensus        84 ~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  133 (317)
T d1vyhc1          84 KLWDFQGFECIRTM------------------------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG  133 (317)
T ss_dssp             CEEETTSSCEEECC------------------------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC
T ss_pred             cccccccccccccc------------------------------ccccccceeeeccCCCceEEeeccCcceeEeecccc
Confidence            99998876543332                              25888999999988  89999999999999999999


Q ss_pred             ceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC------------
Q 013717          243 RCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG------------  309 (437)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------  309 (437)
                      +.+..+..|...+.++++++++. |++++.|+.|++|++...    .....+..+...+.++.|+|++            
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  209 (317)
T d1vyhc1         134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK----ECKAELREHRHVVECISWAPESSYSSISEATGSE  209 (317)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred             eeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccc----eeeEEEecCCCCceEEEEeeccccceeeccccce
Confidence            99999999999999999999998 999999999999988654    3567778888999999988753            


Q ss_pred             --------CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeee
Q 013717          310 --------TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCL  379 (437)
Q Consensus       310 --------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~  379 (437)
                              .++++++.|+.|++||+++++    ....+.+|...|.++.++++  +|++|+.||.|++||+.+++   ++
T Consensus       210 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~  282 (317)
T d1vyhc1         210 TKKSGKPGPFLLSGSRDKTIKMWDVSTGM----CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR---CM  282 (317)
T ss_dssp             -------CCEEEEEETTSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC---CC
T ss_pred             eeeeccCCceeEeccCCCEEEEEECCCCc----EEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCc---EE
Confidence                    468999999999999998776    44556778999988887754  99999999999999999876   78


Q ss_pred             eeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717          380 AVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       380 ~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~  419 (437)
                      ..+.+|.++|++++|+|++.     +|++|+.||+|++||
T Consensus       283 ~~~~~h~~~V~~~~~s~~~~-----~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         283 KTLNAHEHFVTSLDFHKTAP-----YVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEECCSSCEEEEEECSSSS-----CEEEEETTSEEEEEC
T ss_pred             EEEcCCCCCEEEEEEcCCCC-----EEEEEeCCCeEEEeC
Confidence            89999999999999999885     799999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-39  Score=293.69  Aligned_cols=318  Identities=23%  Similarity=0.354  Sum_probs=238.8

Q ss_pred             ccccCCCceeEEecCCCcce----eeeecCccCCeEEEEee--CCEEEEEecCeEEEEeCCCCceeeeecc---------
Q 013717           71 LQKLSPDETINFSSASHLCI----NSVQLGHKLPIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTF---------  135 (437)
Q Consensus        71 ~~s~s~dg~i~~~~~~~~~~----~~~~~~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~---------  135 (437)
                      ......++...+|+......    +...++|.+.|+||+|+  |++||+|+++.|+|||+.+++.......         
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~  110 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPE  110 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC---------
T ss_pred             ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeeccccccccccc
Confidence            34455667777887643322    23334899999999999  8999999844999999988543221110         


Q ss_pred             ----ccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717          136 ----NDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI  209 (437)
Q Consensus       136 ----~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (437)
                          .....|...|.+++|+++.  |++|+.||.|++||...++.....                              .
T Consensus       111 ~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~------------------------------~  160 (388)
T d1erja_         111 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL------------------------------Q  160 (388)
T ss_dssp             --------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE------------------------------C
T ss_pred             ccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccc------------------------------c
Confidence                1113578889999999765  999999999999999877644332                              3


Q ss_pred             cCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEe-cCCe-EEEEeCCCeEEEecCCCCcc
Q 013717          210 EHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVS-AGGT-VYTGSADRKIRVWAKPFNEK  285 (437)
Q Consensus       210 ~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~-l~~~~~dg~v~iwd~~~~~~  285 (437)
                      +|...|.++.+++  ..+++++.++.+++||..+.........+.. ..++.+. +++. |++|+.||.|++||+.....
T Consensus       161 ~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~  239 (388)
T d1erja_         161 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL  239 (388)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC-EEEEEECSTTCCEEEEEETTSCEEEEETTTCCE
T ss_pred             cccccccccccccccccccccccceeeeeeeccccccccccccccc-cccccccCCCCCeEEEEcCCCeEEEeecccCcc
Confidence            6899999999988  7899999999999999999888777765555 4455554 4666 99999999999999876543


Q ss_pred             ccee---eEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceE--------EeeeecccccceEEEEeeC-
Q 013717          286 RHAL---IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMV--------VTGALRGHGKAILCLINVA-  353 (437)
Q Consensus       286 ~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------~~~~~~~~~~~i~~~~~~~-  353 (437)
                      ....   .....+|...|.+++|+|++++|++++.||.|++||++.......        .......|...|.++++++ 
T Consensus       240 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  319 (388)
T d1erja_         240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN  319 (388)
T ss_dssp             EEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGG
T ss_pred             ceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCC
Confidence            2221   122346788999999999999999999999999999986543221        2233456788898888874 


Q ss_pred             -CEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCC-CCceEEEEEecCCCcEEEEeecc
Q 013717          354 -GLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEG-QNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       354 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                       .+|++|+.||.|++||+.+++   ++.++.+|.+.|+++++++... .+.+.+|+||+.||+|+||+++.
T Consensus       320 ~~~l~sg~~dg~i~vwd~~~~~---~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         320 DEYILSGSKDRGVLFWDKKSGN---PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             GCEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCc---EEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeeee
Confidence             499999999999999999877   8889999999999998764321 11235899999999999999863

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.3e-38  Score=277.50  Aligned_cols=287  Identities=19%  Similarity=0.245  Sum_probs=220.3

Q ss_pred             eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeE
Q 013717           90 INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKI  164 (437)
Q Consensus        90 ~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i  164 (437)
                      ...+++ ||.++|++++|+  +++|++|+.| .|++||+++++.  ...+.  ..|...|.+++|+++. +++++.|+.+
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~--~~~~~--~~h~~~v~~v~~~~~g~~~~~~~d~~v   78 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS--NRVFP--DVHATMITGIKTTSKGDLFTVSWDDHL   78 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--EECSS--CSCSSCEEEEEECTTSCEEEEETTTEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcE--EEEEc--CCCCCcEEEEEeeccceeecccceeeE
Confidence            456677 999999999999  8999999999 999999998543  33331  4699999999999876 9999999999


Q ss_pred             EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcc
Q 013717          165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLR  243 (437)
Q Consensus       165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~  243 (437)
                      ++|+...........                           ....+...+.++++++ ..+++++.++.+++|+...  
T Consensus        79 ~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--  129 (299)
T d1nr0a2          79 KVVPAGGSGVDSSKA---------------------------VANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--  129 (299)
T ss_dssp             EEECSSSSSSCTTSC---------------------------CEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--
T ss_pred             EEeccCCcccccccc---------------------------cccccccccccccccccccccccccccccccccccc--
Confidence            999987543221111                           1134777889999988 4555566678999999543  


Q ss_pred             eEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEE
Q 013717          244 CLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSIL  322 (437)
Q Consensus       244 ~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  322 (437)
                      ....  .....+.+++|+|++. +++|+.||.|++||++....   .......|...|.+++|+|++++|++++.|+.|+
T Consensus       130 ~~~~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  204 (299)
T d1nr0a2         130 LTEV--PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV---SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVI  204 (299)
T ss_dssp             EEEE--ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE---EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cccc--ccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccc
Confidence            2222  2445688999999998 99999999999999864331   1123345888999999999999999999999999


Q ss_pred             EEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCC
Q 013717          323 VWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ  400 (437)
Q Consensus       323 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  400 (437)
                      +||+.++.... ....+.+|...|.+++++++  +|++|+.||.|++||++++...........+...|.++.|.++.  
T Consensus       205 ~~~~~~~~~~~-~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--  281 (299)
T d1nr0a2         205 PYSVANNFELA-HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--  281 (299)
T ss_dssp             EEEGGGTTEES-CCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETT--
T ss_pred             ccccccccccc-ccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCC--
Confidence            99998654322 33446778999999988755  99999999999999999866333333333345567777665543  


Q ss_pred             CceEEEEEecCCCcEEEEeec
Q 013717          401 NGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       401 ~~~~~l~s~~~dg~i~iw~~~  421 (437)
                          +|++++.||.|++||+.
T Consensus       282 ----~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         282 ----TIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             ----EEEEEETTSCEEEEECC
T ss_pred             ----EEEEEeCCCEEEEEecc
Confidence                79999999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.6e-38  Score=279.54  Aligned_cols=279  Identities=15%  Similarity=0.173  Sum_probs=226.7

Q ss_pred             CccCCeEEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCC
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTP  171 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~  171 (437)
                      .+.+.+.+++++  |+.|+.+..+.|.+||+++...  ...+   .+|...|++++|+|++  |++|+.||+|++||+.+
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~--~~~~---~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~   89 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTD--TEIY---TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQ   89 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSC--CEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSS
T ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCEEEEEECCCCce--eEEE---cCCCCCEEEEEEeCCCCeEeccccCceEeeeeeec
Confidence            444566677887  8899988766999999988533  3333   5799999999999776  99999999999999987


Q ss_pred             CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC--CCcEEEEECCCcceEEE
Q 013717          172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW--DKSLKIWRASDLRCLES  247 (437)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~--dg~i~iwd~~~~~~~~~  247 (437)
                      .+....                            ..+..|..+|.+++|++  +++++++.  +..+++|++++++....
T Consensus        90 ~~~~~~----------------------------~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~  141 (311)
T d1nr0a1          90 TTHILK----------------------------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGN  141 (311)
T ss_dssp             TTCCEE----------------------------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBC
T ss_pred             cccccc----------------------------cccccccCcccccccccccccccccccccccccccccccccccccc
Confidence            653221                            12246899999999998  77888875  46699999999999999


Q ss_pred             eecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717          248 IKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD  325 (437)
Q Consensus       248 ~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (437)
                      +.+|...|++++|+|++.  +++|+.||.|++||++..    +....+..|...|.++.|+|++++|++++.|+.|++||
T Consensus       142 l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~----~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d  217 (311)
T d1nr0a1         142 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF----KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN  217 (311)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ccccccccccccccccceeeeccccccccccccccccc----ccccccccccccccccccCccccccccccccccccccc
Confidence            999999999999999886  788999999999988754    46777788999999999999999999999999999999


Q ss_pred             CCCCccceEEee---eecccccceEEEEeeC--CEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCC---CeeEEEEEcc
Q 013717          326 REDSANHMVVTG---ALRGHGKAILCLINVA--GLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTK---PVKSLTAVTE  397 (437)
Q Consensus       326 ~~~~~~~~~~~~---~~~~~~~~i~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~---~v~~l~~~~~  397 (437)
                      +.++.....+..   ...+|...|.+++|++  ++|++|+.||.|+|||+++++   ++.++..|..   .+.++.|.++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~---~~~~l~~~~~~~~~~~~~~~~~~  294 (311)
T d1nr0a1         218 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK---VEKTIPVGTRIEDQQLGIIWTKQ  294 (311)
T ss_dssp             TTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---EEEEEECCSSGGGCEEEEEECSS
T ss_pred             cccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCc---EEEEEECCCCccceEEEEEecCC
Confidence            988764433321   2346888999999875  499999999999999999876   7777776643   3445555443


Q ss_pred             CCCCceEEEEEecCCCcEEEEeec
Q 013717          398 EGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       398 ~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                             +|++++.||.|++||++
T Consensus       295 -------~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         295 -------ALVSISANGFINFVNPE  311 (311)
T ss_dssp             -------CEEEEETTCCEEEEETT
T ss_pred             -------EEEEEECCCEEEEEeCC
Confidence                   59999999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-37  Score=276.73  Aligned_cols=285  Identities=18%  Similarity=0.263  Sum_probs=237.7

Q ss_pred             eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCe
Q 013717           90 INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCK  163 (437)
Q Consensus        90 ~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~  163 (437)
                      ...++| ||.++|++++|+  +++||+|+.| .|+|||+.++  +.+..+   ..|...|.+++|+++.  +++++.|+.
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~--~~~~~~---~~~~~~v~~v~~~~~~~~l~~~~~d~~  120 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT--NKVHAI---PLRSSWVMTCAYAPSGNYVACGGLDNI  120 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT--EEEEEE---ECSCSCEEEEEECTTSSEEEEEETTCC
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccc--eeEEEE---ecccccEEeeEeeccceeeeeecccce
Confidence            455677 999999999999  8999999999 9999999985  344444   4699999999999765  999999999


Q ss_pred             EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCc
Q 013717          164 IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDL  242 (437)
Q Consensus       164 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~  242 (437)
                      +++|+...........                          ..+.+|........... ..+.....+.....++....
T Consensus       121 i~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (340)
T d1tbga_         121 CSIYNLKTREGNVRVS--------------------------RELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG  174 (340)
T ss_dssp             EEEEESSSSCSCCCEE--------------------------EEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTT
T ss_pred             eecccccccccccccc--------------------------eecccccccccccccccccccccccccccccccccccc
Confidence            9999987654222111                          12234666666665555 88888999999999999888


Q ss_pred             ceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcE
Q 013717          243 RCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSI  321 (437)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  321 (437)
                      ........+...+....+.+.+. +++|+.|+.|++||++..    +.+..+.+|...|++++|+|++++|++|+.||.|
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~----~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i  250 (340)
T d1tbga_         175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG----MCRQTFTGHESDINAICFFPNGNAFATGSDDATC  250 (340)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             cccccccccceeEeeeccccccceeEEeecCceEEEEECCCC----cEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeE
Confidence            87777778888999999998888 899999999999988654    4677888999999999999999999999999999


Q ss_pred             EEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCC
Q 013717          322 LVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEG  399 (437)
Q Consensus       322 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  399 (437)
                      ++||++........  ....+...+.++.++++  +|++|+.||.|++||+.+++   ++..+.+|.++|++++|+|++.
T Consensus       251 ~~~~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~---~~~~~~~H~~~V~~l~~s~d~~  325 (340)
T d1tbga_         251 RLFDLRADQELMTY--SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD---RAGVLAGHDNRVSCLGVTDDGM  325 (340)
T ss_dssp             EEEETTTTEEEEEE--CCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSS
T ss_pred             EEEeeccccccccc--ccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCc---EEEEEcCCCCCEEEEEEeCCCC
Confidence            99999876533222  23456677888887654  99999999999999999876   8899999999999999999885


Q ss_pred             CCceEEEEEecCCCcEEEEe
Q 013717          400 QNGVVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       400 ~~~~~~l~s~~~dg~i~iw~  419 (437)
                           +|++|+.||.|++||
T Consensus       326 -----~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         326 -----AVATGSWDSFLKIWN  340 (340)
T ss_dssp             -----CEEEEETTSCEEEEC
T ss_pred             -----EEEEEccCCEEEEeC
Confidence                 799999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.6e-38  Score=283.13  Aligned_cols=292  Identities=15%  Similarity=0.215  Sum_probs=227.9

Q ss_pred             cCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCC
Q 013717           98 KLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPT  172 (437)
Q Consensus        98 ~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~  172 (437)
                      .++|+|++|+  +++||+|+.| .|+|||..+++...+..+   .+|.++|.+|+|+|+.  |++++.|++|++||+.++
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l---~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~   83 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL---KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR   83 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE---ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEe---cCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccc
Confidence            4789999999  8999999999 999999988766666666   6899999999999765  999999999999999876


Q ss_pred             cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceE----E
Q 013717          173 KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCL----E  246 (437)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~----~  246 (437)
                      .......                            +.+|...|.+++|+|  +.+++++.|+.|++|++......    .
T Consensus        84 ~~~~~~~----------------------------~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~  135 (371)
T d1k8kc_          84 TWKPTLV----------------------------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH  135 (371)
T ss_dssp             EEEEEEE----------------------------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE
T ss_pred             ccccccc----------------------------cccccccccccccccccccceeecccCcceeeeeecccccccccc
Confidence            5332221                            135888999999998  89999999999999998766533    2


Q ss_pred             EeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcc--------------cceeeEEeeCccccEEEEEEccCCCE
Q 013717          247 SIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEK--------------RHALIATLEKHKSAVNALALSDDGTV  311 (437)
Q Consensus       247 ~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~--------------~~~~~~~~~~~~~~i~~~~~~~~~~~  311 (437)
                      ....|...|.+++|+|++. |++|+.||.|++||+.....              ....+.....|...|.+++|+|+|++
T Consensus       136 ~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  215 (371)
T d1k8kc_         136 IKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR  215 (371)
T ss_dssp             ECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE
T ss_pred             cccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccc
Confidence            2346788999999999998 99999999999999754321              12345666778899999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCee-------------
Q 013717          312 LFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFG-------------  377 (437)
Q Consensus       312 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~-------------  377 (437)
                      |++++.|+.|++||+..+.    ....+..|..+|.++.|+++ .+++++.|+.+++|.........             
T Consensus       216 l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (371)
T d1k8kc_         216 VAWVSHDSTVCLADADKKM----AVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS  291 (371)
T ss_dssp             EEEEETTTEEEEEEGGGTT----EEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC----
T ss_pred             ccccccCCcceEEeeeccc----ceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccc
Confidence            9999999999999998765    34445678889999888755 44556668887777643321000             


Q ss_pred             -------------------------eeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          378 -------------------------CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       378 -------------------------~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                                               .......|.+.|+++++.+..... ...|+|+|.||.|++||+++.+.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~-~~~~~T~g~Dg~v~iW~~~~~~~  363 (371)
T d1k8kc_         292 QRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAK-CSQFCTTGMDGGMSIWDVRSLES  363 (371)
T ss_dssp             ----CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTS-CSEEEEEETTSEEEEEEHHHHHH
T ss_pred             cccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcc-eEEEEEEcCCCeEEEEeCCcChh
Confidence                                     000112488999999999865321 12589999999999999977543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-36  Score=271.61  Aligned_cols=328  Identities=19%  Similarity=0.213  Sum_probs=243.5

Q ss_pred             eccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeeccccCCC
Q 013717           64 TLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDS  140 (437)
Q Consensus        64 ~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~  140 (437)
                      +.++.+.+++++.||+|++|+... .+++..+ +|.++|.+++|+ +++|++|+.| .|++|+............   ..
T Consensus        19 ~~~~~~~l~tgs~Dg~i~vWd~~~-~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~---~~   94 (355)
T d1nexb2          19 LQFEDNYVITGADDKMIRVYDSIN-KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEG---HN   94 (355)
T ss_dssp             EEEETTEEEEEETTTEEEEEETTT-TEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECC---CS
T ss_pred             EEECCCEEEEEeCCCeEEEEECCC-CcEEEEEECCCCCEEEEEEcCCCEEEEEeccccccccccccccccccccc---cc
Confidence            345677899999999999999976 4666777 999999999999 8899999999 999999998644333332   33


Q ss_pred             CcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717          141 SSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL  218 (437)
Q Consensus       141 h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  218 (437)
                      +........+.++.  +++++.|+.|++||+.+...............  .........     ........|...+...
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~v~~~  167 (355)
T d1nexb2          95 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL--VFHTPEENP-----YFVGVLRGHMASVRTV  167 (355)
T ss_dssp             SCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCE--EESCTTTCT-----TEEEEEECCSSCEEEE
T ss_pred             ccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceecc--ceecccccc-----ceeeeeeecccccccc
Confidence            44555666666665  89999999999999987654332221111000  000000000     0012224577788888


Q ss_pred             EeCCCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCcc
Q 013717          219 AVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHK  297 (437)
Q Consensus       219 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  297 (437)
                      ..++++++++..|+.|++||+.+++.+.....+...+.++.++|++. +++++.|+.|++||++..    ..+..+.+|.
T Consensus       168 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~----~~~~~~~~h~  243 (355)
T d1nexb2         168 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG----ELMYTLQGHT  243 (355)
T ss_dssp             EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC----CEEEEECCCS
T ss_pred             ccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccc----cccccccccc
Confidence            88889999999999999999999999999888999999999999998 999999999999988654    4677888999


Q ss_pred             ccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCee
Q 013717          298 SAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFG  377 (437)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  377 (437)
                      ..|.+++++  +++|++|+.||.|++||+++.......   ...+...+..+..++.++++| .||.|+|||+++++   
T Consensus       244 ~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~---  314 (355)
T d1nexb2         244 ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY---HHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGK---  314 (355)
T ss_dssp             SCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEE---ECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCC---
T ss_pred             ccccccccc--cceeeeeecccccccccccccceeccc---ccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCC---
Confidence            999999987  469999999999999999876532221   122223334445555566555 58999999999877   


Q ss_pred             ee-eeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          378 CL-AVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       378 ~~-~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      ++ ..+.+|.++|.+++|+|+.      ++++++.||.++||.++
T Consensus       315 ~~~~~~~~~~~~V~~v~~~~~~------~~~~~s~dg~~~l~~~d  353 (355)
T d1nexb2         315 LVHANILKDADQIWSVNFKGKT------LVAAVEKDGQSFLEILD  353 (355)
T ss_dssp             BCCSCTTTTCSEEEEEEEETTE------EEEEEESSSCEEEEEEE
T ss_pred             EEEEEecCCCCCEEEEEEcCCe------EEEEEECCCcEEEEEEe
Confidence            44 4567899999999999864      78899999998887654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.8e-37  Score=270.01  Aligned_cols=275  Identities=17%  Similarity=0.179  Sum_probs=220.8

Q ss_pred             ceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccc
Q 013717           61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFN  136 (437)
Q Consensus        61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~  136 (437)
                      .+.+.|....++.. .++.+.+|+.... .....+ +|.+.|+|++|+  |++||+|+.| .|+|||+..+.......+ 
T Consensus        22 ~~a~~~~g~~l~~~-~~~~v~i~~~~~~-~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~-   98 (311)
T d1nr0a1          22 VLGNTPAGDKIQYC-NGTSVYTVPVGSL-TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI-   98 (311)
T ss_dssp             CCEECTTSSEEEEE-ETTEEEEEETTCS-SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE-
T ss_pred             EEEEcCCCCEEEEE-eCCEEEEEECCCC-ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccc-
Confidence            45677777777765 4567899999764 444455 999999999999  9999999999 999999998654444444 


Q ss_pred             cCCCCcccEEEEEEeCCe--EEEEec--CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717          137 DNDSSSGSVKSVTFCDGK--IFTAHQ--DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG  212 (437)
Q Consensus       137 ~~~~h~~~v~~l~~~~~~--l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (437)
                        ..|...|.+++|+++.  |++++.  +..+++|++++++....+                              .+|.
T Consensus        99 --~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l------------------------------~~h~  146 (311)
T d1nr0a1          99 --PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL------------------------------TGQA  146 (311)
T ss_dssp             --ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCC------------------------------CCCS
T ss_pred             --ccccCccccccccccccccccccccccccccccccccccccccc------------------------------cccc
Confidence              5689999999999765  777765  466999999987644333                              3588


Q ss_pred             CcEEEEEeCC--C-eEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccce
Q 013717          213 DAVTGLAVNN--G-LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHA  288 (437)
Q Consensus       213 ~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~  288 (437)
                      ..|.+++|+|  + .+++|+.||.|++||+++++....+..|...|+++.++|++. +++++.||.|++||+........
T Consensus       147 ~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~  226 (311)
T d1nr0a1         147 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV  226 (311)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             cccccccccccceeeecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccc
Confidence            9999999988  3 588999999999999999999999999999999999999999 99999999999999875542211


Q ss_pred             ee---EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcE
Q 013717          289 LI---ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTV  365 (437)
Q Consensus       289 ~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i  365 (437)
                      ..   ....+|...|.+++|+|++++|++|+.||.|+|||+++++....+.. ...+...+.++.++++.|++++.||.|
T Consensus       227 ~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~-~~~~~~~~~~~~~~~~~l~s~s~dG~i  305 (311)
T d1nr0a1         227 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV-GTRIEDQQLGIIWTKQALVSISANGFI  305 (311)
T ss_dssp             CBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred             ccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEEC-CCCccceEEEEEecCCEEEEEECCCEE
Confidence            10   11235788999999999999999999999999999988764333221 122344567889999999999999999


Q ss_pred             EEeeCC
Q 013717          366 RIWQRG  371 (437)
Q Consensus       366 ~iwd~~  371 (437)
                      ++||.+
T Consensus       306 ~~wd~d  311 (311)
T d1nr0a1         306 NFVNPE  311 (311)
T ss_dssp             EEEETT
T ss_pred             EEEeCC
Confidence            999974

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-36  Score=268.91  Aligned_cols=267  Identities=14%  Similarity=0.196  Sum_probs=223.8

Q ss_pred             ccceeeccccccccccCCCceeEEecCCCcc--e--eeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCcee
Q 013717           59 NLSLQTLPSVPSLQKLSPDETINFSSASHLC--I--NSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWT  130 (437)
Q Consensus        59 ~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~--~--~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~  130 (437)
                      ...+.|+|....+++++ ||.|++|++....  .  ..... +|.+.|.+++|+  +++|++|+.| .|++||+.....+
T Consensus        54 V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~  132 (337)
T d1gxra_          54 VCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR  132 (337)
T ss_dssp             CCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E
T ss_pred             EEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccc
Confidence            35789999999999987 8999999985432  1  22223 899999999999  8999999999 9999999875455


Q ss_pred             eeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceee
Q 013717          131 SINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLW  208 (437)
Q Consensus       131 ~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (437)
                      ....+   ..|...|.+++|+++.  +++++.|+.|++|++.+++.....                              
T Consensus       133 ~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~------------------------------  179 (337)
T d1gxra_         133 IKAEL---TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF------------------------------  179 (337)
T ss_dssp             EEEEE---ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE------------------------------
T ss_pred             ccccc---cccccccccccccccccccccccccccccccccccccccccc------------------------------
Confidence            55544   5689999999999765  889999999999999887643322                              


Q ss_pred             ecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcc
Q 013717          209 IEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEK  285 (437)
Q Consensus       209 ~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~  285 (437)
                      ..|...|.++++++  ..+++++.|+.|++||+++++.+..+. +...|.+++|+|++. +++|+.||.+++||++... 
T Consensus       180 ~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~-  257 (337)
T d1gxra_         180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-  257 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-
T ss_pred             cccccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccc-
Confidence            35889999999988  899999999999999999999887775 788999999999998 9999999999999987543 


Q ss_pred             cceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCC
Q 013717          286 RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADR  363 (437)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg  363 (437)
                          ......|...|.+++|+|+|++|++++.||.|++||+.+++....     ..|...|.+++++++  +|++|+.||
T Consensus       258 ----~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~-----~~~~~~v~~~~~s~d~~~l~t~s~D~  328 (337)
T d1gxra_         258 ----KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-----SKESSSVLSCDISVDDKYIVTGSGDK  328 (337)
T ss_dssp             ----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-----EECSSCEEEEEECTTSCEEEEEETTS
T ss_pred             ----cccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE-----ccCCCCEEEEEEeCCCCEEEEEeCCC
Confidence                234567899999999999999999999999999999988764332     236788988888754  999999999


Q ss_pred             cEEEeeC
Q 013717          364 TVRIWQR  370 (437)
Q Consensus       364 ~i~iwd~  370 (437)
                      +|+|||+
T Consensus       329 ~I~vWdl  335 (337)
T d1gxra_         329 KATVYEV  335 (337)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            9999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-35  Score=260.32  Aligned_cols=307  Identities=21%  Similarity=0.349  Sum_probs=249.4

Q ss_pred             eccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCC
Q 013717           64 TLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSS  141 (437)
Q Consensus        64 ~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h  141 (437)
                      +.++...+++++.||+|++|+... .+++..+ +|...|.+++|++++|++|+.| .+++|+..........     ..+
T Consensus        23 ~~~~g~~l~sgs~Dg~i~vWd~~~-~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~~~~~~~~-----~~~   96 (342)
T d2ovrb2          23 LQFCGNRIVSGSDDNTLKVWSAVT-GKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTL-----YGH   96 (342)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTT-CCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE-----CCC
T ss_pred             EEECCCEEEEEeCCCeEEEEECCC-CCEEEEEeCCCCCEEEEEeCCCccccceecccccccccccccceecc-----ccc
Confidence            456678899999999999999976 4566777 9999999999999999999999 9999999885433332     346


Q ss_pred             cccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717          142 SGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN  221 (437)
Q Consensus       142 ~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  221 (437)
                      ...+......+..+..+..|+.+.+|+..+++......                              .+..........
T Consensus        97 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~  146 (342)
T d2ovrb2          97 TSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLM------------------------------GHVAAVRCVQYD  146 (342)
T ss_dssp             SSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEE------------------------------CCSSCEEEEEEC
T ss_pred             ceeEeeeecccccccccccceeEEEeecccccceeeee------------------------------cccccceeeccc
Confidence            67788888888889999999999999998876433322                              233334444445


Q ss_pred             CCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccE
Q 013717          222 NGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAV  300 (437)
Q Consensus       222 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i  300 (437)
                      ...++.++.|+.|++||....+.+..+.+|...+..+.+  ++. +++|+.||.|++||++..    +.+..+..|...+
T Consensus       147 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~----~~~~~~~~~~~~v  220 (342)
T d2ovrb2         147 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG----NCIHTLTGHQSLT  220 (342)
T ss_dssp             SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC----CEEEEECCCCSCE
T ss_pred             cceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccc----eeeeEecccccce
Confidence            589999999999999999999999999888877766655  556 999999999999988654    3677788899999


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeee
Q 013717          301 NALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLA  380 (437)
Q Consensus       301 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  380 (437)
                      .++.++  +++|++++.||.|++||+...+.... ......|...+.++.++++++++|+.||.|++||+++++   ++.
T Consensus       221 ~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~---~i~  294 (342)
T d2ovrb2         221 SGMELK--DNILVSGNADSTVKIWDIKTGQCLQT-LQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE---FIR  294 (342)
T ss_dssp             EEEEEE--TTEEEEEETTSCEEEEETTTCCEEEE-ECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC---EEE
T ss_pred             eEEecC--CCEEEEEcCCCEEEEEeccccccccc-ccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCC---EEE
Confidence            988876  45999999999999999987754433 233456788899999999999999999999999999887   444


Q ss_pred             ee-----cCCCCCeeEEEEEccCCCCceEEEEEecCCCc----EEEEeeccC
Q 013717          381 VL-----EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGE----IRAWQVSVS  423 (437)
Q Consensus       381 ~~-----~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~----i~iw~~~~~  423 (437)
                      .+     .+|...|++++|+|++     .+|++|+.||+    |++||++..
T Consensus       295 ~~~~~~~~~~~~~v~~v~~s~~~-----~~la~g~~dGt~~~~l~~~Df~~~  341 (342)
T d2ovrb2         295 NLVTLESGGSGGVVWRIRASNTK-----LVCAVGSRNGTEETKLLVLDFDVD  341 (342)
T ss_dssp             EEEECTTGGGTCEEEEEEECSSE-----EEEEEECSSSSSCCEEEEEECCCC
T ss_pred             EEecccCCCCCCCEEEEEECCCC-----CEEEEEeCCCCCeeEEEEEeCCCC
Confidence            44     3577889999999987     58999999985    999999753

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-36  Score=269.75  Aligned_cols=283  Identities=18%  Similarity=0.334  Sum_probs=217.2

Q ss_pred             eeeec-CccCCe-EEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEE
Q 013717           91 NSVQL-GHKLPI-GCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRV  166 (437)
Q Consensus        91 ~~~~~-~h~~~V-~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~i  166 (437)
                      ...+| ||.+.| +|++|++++||+|+.| .|+|||+.++  +.+.++   .+|.+.|.+|+|+++. |++|+.|++|++
T Consensus         4 ~~~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~--~~~~~l---~~H~~~V~~l~~s~~~~l~s~s~D~~i~i   78 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINK--KFLLQL---SGHDGGVWALKYAHGGILVSGSTDRTVRV   78 (355)
T ss_dssp             EEEEEECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTT--EEEEEE---ECCSSCEEEEEEETTTEEEEEETTCCEEE
T ss_pred             CcEEECCcCCCcEEEEEECCCEEEEEeCCCeEEEEECCCC--cEEEEE---ECCCCCEEEEEEcCCCEEEEEeccccccc
Confidence            35567 998875 7899999999999999 9999999985  455555   5799999999999765 999999999999


Q ss_pred             EeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcce
Q 013717          167 WQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRC  244 (437)
Q Consensus       167 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~  244 (437)
                      |+....+........                            .+........+.+  .++++++.|+.|++||+.+...
T Consensus        79 w~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~  130 (355)
T d1nexb2          79 WDIKKGCCTHVFEGH----------------------------NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS  130 (355)
T ss_dssp             EETTTTEEEEEECCC----------------------------SSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC---
T ss_pred             ccccccccccccccc----------------------------cccccccccccccccceeeeecCCCcEEEEEccCCce
Confidence            999877644332211                            1233344445555  7899999999999999987654


Q ss_pred             EEEe-----------------------ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccE
Q 013717          245 LESI-----------------------KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAV  300 (437)
Q Consensus       245 ~~~~-----------------------~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i  300 (437)
                      ....                       ..|...+..  +.+++. ++++..|+.|++||++..    +.+....++...+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~d~~i~~~d~~~~----~~~~~~~~~~~~~  204 (355)
T d1nexb2         131 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQM----KCLYILSGHTDRI  204 (355)
T ss_dssp             --------CCCEEESCTTTCTTEEEEEECCSSCEEE--EEEETTEEEEEETTSCEEEEETTTT----EEEEEECCCSSCE
T ss_pred             eccccccceeccceeccccccceeeeeeeccccccc--cccccceeeeecccceeeeeecccc----cceeeeecccccc
Confidence            3221                       122333333  344556 899999999999988654    3566777888899


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeee
Q 013717          301 NALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLA  380 (437)
Q Consensus       301 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  380 (437)
                      .++.|+|++.++++++.|+.|++||++++.    ....+.+|...|.++.+++++|++|+.||.|++||+++..     .
T Consensus       205 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~----~~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~  275 (355)
T d1nexb2         205 YSTIYDHERKRCISASMDTTIRIWDLENGE----LMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS-----R  275 (355)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEETTTCC----EEEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTCC-----E
T ss_pred             ccccccccceeeecccccceEEeeeccccc----cccccccccccccccccccceeeeeecccccccccccccc-----e
Confidence            999999999999999999999999998876    4455678999999999999999999999999999998754     3


Q ss_pred             eecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCC
Q 013717          381 VLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPN  426 (437)
Q Consensus       381 ~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  426 (437)
                      .+..|...+.++.+.+.++.    +|+ ++.||.|++||+++++..
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~----~l~-~g~d~~i~vwd~~tg~~~  316 (355)
T d1nexb2         276 KFSYHHTNLSAITTFYVSDN----ILV-SGSENQFNIYNLRSGKLV  316 (355)
T ss_dssp             EEEEECTTCCCCCEEEECSS----EEE-EEETTEEEEEETTTCCBC
T ss_pred             ecccccCCceEEEEEcCCCC----EEE-EEeCCEEEEEECCCCCEE
Confidence            45567777777766554443    454 556899999999988754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-35  Score=256.65  Aligned_cols=266  Identities=19%  Similarity=0.210  Sum_probs=214.4

Q ss_pred             ceeeeec-CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEE
Q 013717           89 CINSVQL-GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIR  165 (437)
Q Consensus        89 ~~~~~~~-~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~  165 (437)
                      .++++++ ||.++|++++|+.  |++|+.| +|++||+.++  .        .+|...|.++.+.++. +++++.|++|+
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~--~--------~~h~~~V~~~~~~~~~~~~s~s~D~~v~   70 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP--LISGSYDGRIMEWSSSSM--H--------QDHSNLIVSLDNSKAQEYSSISWDDTLK   70 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT--TEEEETTSCEEETTTTEE--E--------CCCCSCEEEEECCSTTCCEEEETTTEEE
T ss_pred             cceeEEECCCCCceEEEEECc--EEEEeCCCeEEEEECCCC--C--------CCCCCCEEEEEecCCCeEEEEeeccccc
Confidence            4677788 9999999999986  9999999 9999998762  1        3699999999999766 99999999999


Q ss_pred             EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcce
Q 013717          166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRC  244 (437)
Q Consensus       166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~  244 (437)
                      +|++...+                                     ....+..+.+.+ ..++..+.++.+.+|+..+++.
T Consensus        71 ~w~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (287)
T d1pgua2          71 VNGITKHE-------------------------------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDI  113 (287)
T ss_dssp             ETTEEEEE-------------------------------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCE
T ss_pred             cccccccc-------------------------------------cccceeeeeeccCCceEEEeecccceeeeccceee
Confidence            99976432                                     334566777777 7777778888999999999998


Q ss_pred             EEEeecccccEEEEEEecCCe-EEEEeCC-CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEE
Q 013717          245 LESIKAHEDAVNAVAVSAGGT-VYTGSAD-RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSIL  322 (437)
Q Consensus       245 ~~~~~~~~~~v~~~~~~~~~~-l~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  322 (437)
                      +..+.. ...+.  ++++++. +++++.+ +.+++|++....   ........+...+++++|+|++.+|++|+.||.|+
T Consensus       114 ~~~~~~-~~~~~--~~~~~~~~~~v~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~  187 (287)
T d1pgua2         114 IKSVRL-NSPGS--AVSLSQNYVAVGLEEGNTIQVFKLSDLE---VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKIL  187 (287)
T ss_dssp             EEEEEC-SSCEE--EEEECSSEEEEEETTTSCEEEEETTEEE---EEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eeeccc-cceee--eeeccCcceeeeccccceeeeeeccccc---eeeeeeeccCCceeEEEeccCcccccccccccccc
Confidence            888763 34444  4455665 6666666 579999875322   12222234678899999999999999999999999


Q ss_pred             EEECCCCccceEEeeeecccccceEEEEeeC------------CEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCee
Q 013717          323 VWDREDSANHMVVTGALRGHGKAILCLINVA------------GLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVK  390 (437)
Q Consensus       323 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  390 (437)
                      +||+.+++.   ....+.+|...|.+++|++            .+|++|+.|+.|+|||++.+.  ..+..+.+|.+.|+
T Consensus       188 i~d~~~~~~---~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~--~~~~~~~~h~~~V~  262 (287)
T d1pgua2         188 LYDLQSREV---KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM--KIIKALNAHKDGVN  262 (287)
T ss_dssp             EEETTTTEE---EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT--CCEEETTSSTTCEE
T ss_pred             ceeeccccc---ccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC--eEEEEeCCCCCCeE
Confidence            999987642   2334678899999998753            389999999999999998754  47788889999999


Q ss_pred             EEEEEccCCCCceEEEEEecCCCcEEEEee
Q 013717          391 SLTAVTEEGQNGVVSVFSGSLDGEIRAWQV  420 (437)
Q Consensus       391 ~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~  420 (437)
                      +++|+|++      .|++++.||.|++|++
T Consensus       263 ~v~~~~~~------~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         263 NLLWETPS------TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEEETT------EEEEEETTSCEEEEEE
T ss_pred             EEEECCCC------EEEEEECCCeEEEEEE
Confidence            99999976      6999999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.9e-35  Score=257.76  Aligned_cols=284  Identities=17%  Similarity=0.206  Sum_probs=213.0

Q ss_pred             CeEEEEee--CCEEEEEecC--eEEEEeCCCCceeeeeccccCCCC-cccEEEEEEeCC----eEEEEecCCeEEEEeCC
Q 013717          100 PIGCIAVH--HNFLYAASSH--EINVYDRTGTTWTSINTFNDNDSS-SGSVKSVTFCDG----KIFTAHQDCKIRVWQLT  170 (437)
Q Consensus       100 ~V~~l~~~--~~~l~s~~~d--~v~vwd~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~----~l~s~~~dg~i~iwd~~  170 (437)
                      .+++++|+  ++.|+.++.+  .|+.|+...........+   .+| ...|++++|+|+    .|++|+.||+|++||+.
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~---~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~   95 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQF---TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT   95 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEE---CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEE---eCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeec
Confidence            45788898  8899988777  566777655433444444   455 578999999853    28899999999999997


Q ss_pred             CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE--CCCcEEEEECCCcceEE
Q 013717          171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS--WDKSLKIWRASDLRCLE  246 (437)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~--~dg~i~iwd~~~~~~~~  246 (437)
                      .++......                      ......+..|..+|.+++|++  .++++++  .++.+++|+..+++.+.
T Consensus        96 ~~~~~~~~~----------------------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  153 (325)
T d1pgua1          96 FDKESNSVE----------------------VNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLG  153 (325)
T ss_dssp             EEGGGTEEE----------------------EEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEE
T ss_pred             CCcceeeee----------------------cccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccce
Confidence            665433222                      111223456889999999988  6777665  46789999999999999


Q ss_pred             EeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccC-CCEEEEEeCCCcEEE
Q 013717          247 SIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD-GTVLFSGACDRSILV  323 (437)
Q Consensus       247 ~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i  323 (437)
                      .+.+|...|.+++|+|++.  +++++.|+.+++||+..... .........|...|.+++|+|+ +.+|++++.||.|++
T Consensus       154 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~-~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~i  232 (325)
T d1pgua1         154 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF-SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC  232 (325)
T ss_dssp             ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE-EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEE
T ss_pred             eeeecccccccccccccccceEEEeeccccccccccccccc-ceecccccCCCCccEEeeeccccceeccccccccceee
Confidence            9999999999999999886  77899999999999764321 1222334567788999999996 689999999999999


Q ss_pred             EECCCCccceEEeeeecccccce----EEEEee-CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCC--eeEEEEEc
Q 013717          324 WDREDSANHMVVTGALRGHGKAI----LCLINV-AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKP--VKSLTAVT  396 (437)
Q Consensus       324 ~d~~~~~~~~~~~~~~~~~~~~i----~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~--v~~l~~~~  396 (437)
                      ||+++++.    ...+.+|...+    .++.+. +.+|++++.|+.|+|||+++++   ++..+..|...  +..+++.+
T Consensus       233 wd~~~~~~----~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~  305 (325)
T d1pgua1         233 FDGKSGEF----LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK---CVQKWTLDKQQLGNQQVGVVA  305 (325)
T ss_dssp             EETTTCCE----EEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTE---EEEEEECCTTCGGGCEEEEEE
T ss_pred             eeeccccc----cccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCC---EEEEEEecCCcccCeEEEEEE
Confidence            99988763    33445555444    555543 5699999999999999999876   66666665544  44555554


Q ss_pred             cCCCCceEEEEEecCCCcEEEEee
Q 013717          397 EEGQNGVVSVFSGSLDGEIRAWQV  420 (437)
Q Consensus       397 ~~~~~~~~~l~s~~~dg~i~iw~~  420 (437)
                      .++.    +|++++.||.|++||+
T Consensus       306 ~~~~----~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         306 TGNG----RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EETT----EEEEEETTSCEEEEET
T ss_pred             CCCC----EEEEEECCCEEEEEEC
Confidence            4332    7999999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.9e-35  Score=264.83  Aligned_cols=282  Identities=13%  Similarity=0.124  Sum_probs=223.7

Q ss_pred             ccccceeeccccccccccCCCceeEEecCCCc-ceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceee
Q 013717           57 QSNLSLQTLPSVPSLQKLSPDETINFSSASHL-CINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTS  131 (437)
Q Consensus        57 ~~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~-~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~  131 (437)
                      ++...+.+.|+...+++++.||.|.+|+.... ..++..+ +|.++|.+++|+  +++|++|+.| .|+|||+.++....
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~   87 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP   87 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccc
Confidence            34557899999999999999999999998654 3566777 999999999999  8999999999 99999999876665


Q ss_pred             eeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717          132 INTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI  209 (437)
Q Consensus       132 ~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (437)
                      ...+   .+|...|.+++|+|+.  |++++.|++|++|+++.........                          ....
T Consensus        88 ~~~~---~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~--------------------------~~~~  138 (371)
T d1k8kc_          88 TLVI---LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK--------------------------HIKK  138 (371)
T ss_dssp             EEEC---CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE--------------------------EECT
T ss_pred             cccc---ccccccccccccccccccceeecccCcceeeeeeccccccccc--------------------------cccc
Confidence            5554   5789999999999765  9999999999999987654322211                          1123


Q ss_pred             cCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc------------------ceEEEeecccccEEEEEEecCCe-EEE
Q 013717          210 EHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL------------------RCLESIKAHEDAVNAVAVSAGGT-VYT  268 (437)
Q Consensus       210 ~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~-l~~  268 (437)
                      .|...|.+++|+|  .+|++|+.|+.|++||....                  +.+.....|...|.+++|+|++. |++
T Consensus       139 ~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s  218 (371)
T d1k8kc_         139 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW  218 (371)
T ss_dssp             TCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE
T ss_pred             ccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccc
Confidence            5889999999998  89999999999999998542                  34555667889999999999998 999


Q ss_pred             EeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEee-----------
Q 013717          269 GSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTG-----------  337 (437)
Q Consensus       269 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------  337 (437)
                      ++.|+.|++||+...    ..+..+..|..+|.+++|+|++++|++| .|+.+++|..........+..           
T Consensus       219 ~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (371)
T d1k8kc_         219 VSHDSTVCLADADKK----MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQR  293 (371)
T ss_dssp             EETTTEEEEEEGGGT----TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC------
T ss_pred             cccCCcceEEeeecc----cceeeeecccccceeeeecCCCCEEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccc
Confidence            999999999988644    4677788899999999999999877765 477777766543222111110           


Q ss_pred             --------------------------eecccccceEEEEeeC------CEEEEEeCCCcEEEeeCCC
Q 013717          338 --------------------------ALRGHGKAILCLINVA------GLLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       338 --------------------------~~~~~~~~i~~~~~~~------~~l~~~~~dg~i~iwd~~~  372 (437)
                                                ....|...|.++++.+      ..|++++.||.|+|||+++
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         294 GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             --CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                                      0123777888887643      2699999999999999865

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-34  Score=251.95  Aligned_cols=284  Identities=25%  Similarity=0.395  Sum_probs=226.9

Q ss_pred             ceeeeec-CccCCe-EEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEE
Q 013717           89 CINSVQL-GHKLPI-GCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIR  165 (437)
Q Consensus        89 ~~~~~~~-~h~~~V-~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~  165 (437)
                      .++..++ ||.+.| .|+.++|++||||+.| .|+|||+.++  +.+.++   .+|.+.|.+++|+++.|++++.|+.++
T Consensus         6 ~~~~~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~--~~~~~~---~~h~~~V~~v~~~~~~l~s~s~D~~~~   80 (342)
T d2ovrb2           6 LKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTG--KCLRTL---VGHTGGVWSSQMRDNIIISGSTDRTLK   80 (342)
T ss_dssp             CCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTC--CEEEEC---CCCSSCEEEEEEETTEEEEEETTSCEE
T ss_pred             CCcCEEECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCC--CEEEEE---eCCCCCEEEEEeCCCccccceeccccc
Confidence            3455667 999987 5677889999999999 9999999985  445555   689999999999999999999999999


Q ss_pred             EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceE
Q 013717          166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCL  245 (437)
Q Consensus       166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  245 (437)
                      +|+...........                              .+...+......+..++.+..|+.+.+|+..+++..
T Consensus        81 ~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~  130 (342)
T d2ovrb2          81 VWNAETGECIHTLY------------------------------GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL  130 (342)
T ss_dssp             EEETTTTEEEEEEC------------------------------CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEE
T ss_pred             ccccccccceeccc------------------------------ccceeEeeeecccccccccccceeEEEeecccccce
Confidence            99988765332222                              355567777777789999999999999999999888


Q ss_pred             EEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717          246 ESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD  325 (437)
Q Consensus       246 ~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (437)
                      ..+........ ........+++++.|+.|++||....    ..+..+.+|...+..+.+  ++.+|++++.||.|++||
T Consensus       131 ~~~~~~~~~~~-~~~~~~~~~~~~~~d~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d  203 (342)
T d2ovrb2         131 HVLMGHVAAVR-CVQYDGRRVVSGAYDFMVKVWDPETE----TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWD  203 (342)
T ss_dssp             EEEECCSSCEE-EEEECSSCEEEEETTSCEEEEEGGGT----EEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEE
T ss_pred             eeeecccccce-eeccccceeeeecCCCeEEEeecccc----eeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEee
Confidence            77765444333 23333444999999999999987543    466777778777666554  688999999999999999


Q ss_pred             CCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEE
Q 013717          326 REDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVS  405 (437)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~  405 (437)
                      ++.++    ....+.+|...+.++.+++++|++|+.||.|++||+...+....+.....|...+.++.++++       +
T Consensus       204 ~~~~~----~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  272 (342)
T d2ovrb2         204 VETGN----CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN-------F  272 (342)
T ss_dssp             TTTCC----EEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSS-------E
T ss_pred             cccce----eeeEecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCC-------e
Confidence            98776    445567899999999999999999999999999999987744344444556778888877653       7


Q ss_pred             EEEecCCCcEEEEeeccCCC
Q 013717          406 VFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       406 l~s~~~dg~i~iw~~~~~~~  425 (437)
                      +++|+.||.|++||+++++.
T Consensus       273 ~~s~s~Dg~i~iwd~~tg~~  292 (342)
T d2ovrb2         273 VITSSDDGTVKLWDLKTGEF  292 (342)
T ss_dssp             EEEEETTSEEEEEETTTCCE
T ss_pred             eEEEcCCCEEEEEECCCCCE
Confidence            99999999999999998764

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-34  Score=246.78  Aligned_cols=276  Identities=24%  Similarity=0.399  Sum_probs=222.4

Q ss_pred             eeeec-CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEe
Q 013717           91 NSVQL-GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQ  168 (437)
Q Consensus        91 ~~~~~-~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd  168 (437)
                      .+..+ +|...|+|++|++++||+|+.| .|+|||++++  +.+..+   .+|.+.|.+++|+++.|++|+.|+.|++|+
T Consensus         7 ~i~~~~~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~--~~~~~l---~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~   81 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL--ECKRIL---TGHTGSVLCLQYDERVIITGSSDSTVRVWD   81 (293)
T ss_dssp             CEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSC--CEEEEE---CCCSSCEEEEECCSSEEEEEETTSCEEEEE
T ss_pred             EEeccCCCCCCEEEEEEcCCEEEEEeCCCeEEEEECCCC--cEEEEE---ecCCCCEeeeecccceeecccccccccccc
Confidence            33445 8999999999999999999999 9999999984  455555   579999999999888899999999999999


Q ss_pred             CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcce---E
Q 013717          169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRC---L  245 (437)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~  245 (437)
                      +..+.......                              .+.............++++..++.+.+||......   .
T Consensus        82 ~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (293)
T d1p22a2          82 VNTGEMLNTLI------------------------------HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR  131 (293)
T ss_dssp             SSSCCEEEEEC------------------------------CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEE
T ss_pred             ccccccccccc------------------------------ccccccccccccccceeecccccceeEeecccccccccc
Confidence            98876433322                              13333444444458999999999999999987653   3


Q ss_pred             EEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717          246 ESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD  325 (437)
Q Consensus       246 ~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (437)
                      ..+..|...+..+.+.+ ..+++++.|+.|++||++..    +.+..+.++...+..+.++  +.++++++.||.|++||
T Consensus       132 ~~~~~~~~~v~~~~~~~-~~~~~~s~d~~i~~~d~~~~----~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d  204 (293)
T d1p22a2         132 RVLVGHRAAVNVVDFDD-KYIVSASGDRTIKVWNTSTC----EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWD  204 (293)
T ss_dssp             EEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred             ccccccccccccceecc-cccccccCCCceeeecCCCC----cEEEEEcccccccccccCC--CCeEEEecCCCEEEEEe
Confidence            34456788888887764 34788899999999988654    3677788888888888776  56899999999999999


Q ss_pred             CCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCC------CeeeeeeecCCCCCeeEEEEEccCC
Q 013717          326 REDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDG------RFGCLAVLEGHTKPVKSLTAVTEEG  399 (437)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~h~~~v~~l~~~~~~~  399 (437)
                      +++..    ......++...+..+.+++.+|++|+.||.|++||+....      ...++..+.+|.+.|++++|.+.  
T Consensus       205 ~~~~~----~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~--  278 (293)
T d1p22a2         205 IECGA----CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--  278 (293)
T ss_dssp             TTTCC----EEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSS--
T ss_pred             cccce----eeeeecccceeeeeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCC--
Confidence            98765    3445667888889999999999999999999999975422      22467889999999999999543  


Q ss_pred             CCceEEEEEecCCCcEEEEe
Q 013717          400 QNGVVSVFSGSLDGEIRAWQ  419 (437)
Q Consensus       400 ~~~~~~l~s~~~dg~i~iw~  419 (437)
                           +|+|||.||+|++||
T Consensus       279 -----~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         279 -----QIVSSSHDDTILIWD  293 (293)
T ss_dssp             -----CEEECCSSSEEEEEC
T ss_pred             -----EEEEEecCCEEEEeC
Confidence                 699999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-34  Score=252.96  Aligned_cols=268  Identities=23%  Similarity=0.371  Sum_probs=231.8

Q ss_pred             cccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeee
Q 013717           58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSIN  133 (437)
Q Consensus        58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~  133 (437)
                      +..++.++|..+.+++++.||+|++|+.... .++..+ +|...|.+++++  +.+++++..+ .+.+|+......  ..
T Consensus        19 ~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   95 (317)
T d1vyhc1          19 PVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC--IR   95 (317)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTTC-CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE--EE
T ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-CEEEEEeCCCCcEEEEeeeccccccccccccccccccccccccc--cc
Confidence            3457899999999999999999999999764 455666 999999999999  8999999999 999999888433  33


Q ss_pred             ccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717          134 TFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH  211 (437)
Q Consensus       134 ~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (437)
                      .+   .+|...+.++.++++.  +++++.|+.+++||+++++....+                              .+|
T Consensus        96 ~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------------------------------~~~  142 (317)
T d1vyhc1          96 TM---HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF------------------------------TGH  142 (317)
T ss_dssp             CC---CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE------------------------------ECC
T ss_pred             cc---ccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEE------------------------------ccC
Confidence            33   5689999999999665  999999999999999887643332                              358


Q ss_pred             CCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCC--------------------e-EEE
Q 013717          212 GDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG--------------------T-VYT  268 (437)
Q Consensus       212 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------~-l~~  268 (437)
                      ...+.++++++  .++++++.|+.|++|+..+++....+..+...+.++.++|++                    . +++
T Consensus       143 ~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (317)
T d1vyhc1         143 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS  222 (317)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred             CCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEe
Confidence            88999999988  899999999999999999999999999999999999998753                    3 889


Q ss_pred             EeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEE
Q 013717          269 GSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILC  348 (437)
Q Consensus       269 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~  348 (437)
                      ++.|+.|++||++..    +.+..+.+|...|.+++|+|++++|++|+.||.|++||+++++.    ...+.+|...|.+
T Consensus       223 ~~~d~~i~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~h~~~V~~  294 (317)
T d1vyhc1         223 GSRDKTIKMWDVSTG----MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC----MKTLNAHEHFVTS  294 (317)
T ss_dssp             EETTSEEEEEETTTT----EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC----CEEEECCSSCEEE
T ss_pred             ccCCCEEEEEECCCC----cEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcE----EEEEcCCCCCEEE
Confidence            999999999988654    47788889999999999999999999999999999999988764    3446789999999


Q ss_pred             EEeeCC--EEEEEeCCCcEEEee
Q 013717          349 LINVAG--LLMSGSADRTVRIWQ  369 (437)
Q Consensus       349 ~~~~~~--~l~~~~~dg~i~iwd  369 (437)
                      ++++++  +|++|+.||+|+|||
T Consensus       295 ~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         295 LDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEcCCCCEEEEEeCCCeEEEeC
Confidence            998754  999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.9e-34  Score=259.85  Aligned_cols=272  Identities=21%  Similarity=0.346  Sum_probs=218.1

Q ss_pred             ccceeeccccccccccCCCceeEEecCCCcceeeee-----------------c-CccCCeEEEEee--CCEEEEEecC-
Q 013717           59 NLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQ-----------------L-GHKLPIGCIAVH--HNFLYAASSH-  117 (437)
Q Consensus        59 ~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~-----------------~-~h~~~V~~l~~~--~~~l~s~~~d-  117 (437)
                      ..++.|.|+...+++++ |+.|++|+..........                 . +|...|.+++|+  +++|++|+.| 
T Consensus        65 V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg  143 (388)
T d1erja_          65 VCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR  143 (388)
T ss_dssp             CCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccc
Confidence            36889999999998876 999999998654332221                 1 577889999999  8999999999 


Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCC
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPN  195 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (437)
                      .|++||...++  ....+   .+|...|.++.++++.  +++++.++.+++||..+.......                 
T Consensus       144 ~v~i~~~~~~~--~~~~~---~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-----------------  201 (388)
T d1erja_         144 LIRIWDIENRK--IVMIL---QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-----------------  201 (388)
T ss_dssp             CEEEEETTTTE--EEEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------------
T ss_pred             ccccccccccc--ccccc---ccccccccccccccccccccccccceeeeeeecccccccccc-----------------
Confidence            99999999853  33333   5799999999999664  999999999999999876533322                 


Q ss_pred             CeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEee-------cccccEEEEEEecCCe
Q 013717          196 SYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIK-------AHEDAVNAVAVSAGGT  265 (437)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~  265 (437)
                                    .+.....++.+.+   .+|++|+.||.|++||..++.....+.       +|...|.+++|+|++.
T Consensus       202 --------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  267 (388)
T d1erja_         202 --------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ  267 (388)
T ss_dssp             --------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS
T ss_pred             --------------ccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCC
Confidence                          2444555666654   789999999999999999988776653       5788999999999998


Q ss_pred             -EEEEeCCCeEEEecCCCCcc--------cceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEe
Q 013717          266 -VYTGSADRKIRVWAKPFNEK--------RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVT  336 (437)
Q Consensus       266 -l~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  336 (437)
                       |++|+.||.|++||++....        ..........|...|.+++|+|++++|++|+.||.|++||+++++    ..
T Consensus       268 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~----~~  343 (388)
T d1erja_         268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN----PL  343 (388)
T ss_dssp             EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC----EE
T ss_pred             EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCc----EE
Confidence             99999999999999875432        123345566788999999999999999999999999999998876    44


Q ss_pred             eeecccccceEEEEee--------CCEEEEEeCCCcEEEeeCC
Q 013717          337 GALRGHGKAILCLINV--------AGLLMSGSADRTVRIWQRG  371 (437)
Q Consensus       337 ~~~~~~~~~i~~~~~~--------~~~l~~~~~dg~i~iwd~~  371 (437)
                      ..+.+|...|.++.+.        +.+|++|+.||+|+||+++
T Consensus       344 ~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         344 LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            5577899999988753        3489999999999999975

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.7e-33  Score=245.83  Aligned_cols=272  Identities=19%  Similarity=0.298  Sum_probs=224.2

Q ss_pred             cccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCce--ee
Q 013717           58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTW--TS  131 (437)
Q Consensus        58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~--~~  131 (437)
                      +..++.|.|....+++++.||+|++|+.... ..+..+ +|...|.+++|+  ++++++|+.| .+++|+......  ..
T Consensus        57 ~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~  135 (340)
T d1tbga_          57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTT-NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRV  135 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTT-EEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCE
T ss_pred             CEEEEEECCCCCEEEEEECCCceeeeecccc-eeEEEEecccccEEeeEeeccceeeeeecccceeeccccccccccccc
Confidence            3457899999999999999999999999764 455666 999999999999  8999999999 999999876422  22


Q ss_pred             eeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeec
Q 013717          132 INTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIE  210 (437)
Q Consensus       132 ~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (437)
                      ...+   .+|...........+. +.....|.....|...........                              ..
T Consensus       136 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~  182 (340)
T d1tbga_         136 SREL---AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF------------------------------TG  182 (340)
T ss_dssp             EEEE---CCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEE------------------------------EC
T ss_pred             ceec---ccccccccccccccccccccccccccccccccccccccccc------------------------------cc
Confidence            2222   5677777777766444 888899999999988765432222                              23


Q ss_pred             CCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc
Q 013717          211 HGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH  287 (437)
Q Consensus       211 ~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~  287 (437)
                      +...+....+.+  .++++|+.|+.|++||+++++++..+.+|...|++++|+|++. |++|+.||.|++||++....  
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~--  260 (340)
T d1tbga_         183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE--  260 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--
T ss_pred             cceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccc--
Confidence            667788888877  8999999999999999999999999999999999999999998 99999999999999875431  


Q ss_pred             eeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcE
Q 013717          288 ALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTV  365 (437)
Q Consensus       288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i  365 (437)
                      ........+...|.+++|+|++++|++|+.||.|++||+.+++    ....+.+|...|.+++++++  +|++|+.||.|
T Consensus       261 ~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~----~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v  336 (340)
T d1tbga_         261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD----RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL  336 (340)
T ss_dssp             EEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred             ccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEE
Confidence            1112234566789999999999999999999999999998776    45567889999999998765  99999999999


Q ss_pred             EEee
Q 013717          366 RIWQ  369 (437)
Q Consensus       366 ~iwd  369 (437)
                      +|||
T Consensus       337 ~iWd  340 (340)
T d1tbga_         337 KIWN  340 (340)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.4e-33  Score=245.25  Aligned_cols=274  Identities=18%  Similarity=0.198  Sum_probs=209.2

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeeccc
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTFN  136 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~  136 (437)
                      .++.+.|+...+++++.||+|++|+........... +|...|.+++|+ ...+++++.| .+++|+............ 
T Consensus        16 ~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~-   94 (299)
T d1nr0a2          16 TALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAV-   94 (299)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCC-
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCCccccccccc-
Confidence            578899999999999999999999997654444333 899999999999 3345555566 999999876422211111 


Q ss_pred             cCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcE
Q 013717          137 DNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV  215 (437)
Q Consensus       137 ~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  215 (437)
                       ...+...+.+++++++. +++++.++.+++|+......                                  ......+
T Consensus        95 -~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~----------------------------------~~~~~~~  139 (299)
T d1nr0a2          95 -ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTE----------------------------------VPISYNS  139 (299)
T ss_dssp             -EEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEE----------------------------------EECSSCE
T ss_pred             -cccccccccccccccccccccccccccccccccccccc----------------------------------ccccccc
Confidence             13477889999999776 66677788999998542211                                  0134467


Q ss_pred             EEEEeCC--CeEEEEECCCcEEEEECCCcceEE-EeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeE
Q 013717          216 TGLAVNN--GLIYSVSWDKSLKIWRASDLRCLE-SIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIA  291 (437)
Q Consensus       216 ~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~  291 (437)
                      .++++++  +++++|+.||.|++||+++++... ....|...|++++|+|++. +++++.|+.|++||+..+. ......
T Consensus       140 ~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-~~~~~~  218 (299)
T d1nr0a2         140 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF-ELAHTN  218 (299)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT-EESCCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence            7888888  899999999999999998876544 2346889999999999998 9999999999999986443 222334


Q ss_pred             EeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEe-eCCEEEEEeCCCcEEEeeC
Q 013717          292 TLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLIN-VAGLLMSGSADRTVRIWQR  370 (437)
Q Consensus       292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~dg~i~iwd~  370 (437)
                      .+..|...|++++|+|++++|++|+.||.|++||++++........ ...+...+.++.+ ++.+|++|+.||.|++||+
T Consensus       219 ~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         219 SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK-GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             CCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET-TSSTTSCEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred             cccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEe-cCCCCCcEEEEEECCCCEEEEEeCCCEEEEEec
Confidence            5667899999999999999999999999999999988755433321 2234455666554 4569999999999999998


Q ss_pred             C
Q 013717          371 G  371 (437)
Q Consensus       371 ~  371 (437)
                      .
T Consensus       298 ~  298 (299)
T d1nr0a2         298 P  298 (299)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.4e-32  Score=238.52  Aligned_cols=276  Identities=14%  Similarity=0.143  Sum_probs=204.6

Q ss_pred             ceeeccccccccccCCCc-eeEEecCCC-cceeeeec-Cc-cCCeEEEEee----CCEEEEEecC-eEEEEeCCCCceee
Q 013717           61 SLQTLPSVPSLQKLSPDE-TINFSSASH-LCINSVQL-GH-KLPIGCIAVH----HNFLYAASSH-EINVYDRTGTTWTS  131 (437)
Q Consensus        61 ~~~~~~~~~~~~s~s~dg-~i~~~~~~~-~~~~~~~~-~h-~~~V~~l~~~----~~~l~s~~~d-~v~vwd~~~~~~~~  131 (437)
                      .+.+.|....++..+.+. .++.|+... .......+ +| ...|++++|+    +++|++|+.| +|+|||+..+....
T Consensus        22 ~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~  101 (325)
T d1pgua1          22 HLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN  101 (325)
T ss_dssp             CCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCccee
Confidence            577888888888766554 356676533 33445555 77 5789999996    6799999999 99999987632111


Q ss_pred             ee---ccccCCCCcccEEEEEEeCCe--EEEEe--cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeecc
Q 013717          132 IN---TFNDNDSSSGSVKSVTFCDGK--IFTAH--QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHK  204 (437)
Q Consensus       132 ~~---~~~~~~~h~~~v~~l~~~~~~--l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (437)
                      ..   .......|.++|.+++|+++.  +++++  .++.+++|+.++++....+                          
T Consensus       102 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------  155 (325)
T d1pgua1         102 SVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEV--------------------------  155 (325)
T ss_dssp             EEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEEC--------------------------
T ss_pred             eeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceee--------------------------
Confidence            11   011124588999999999765  55554  5778999999877644333                          


Q ss_pred             ceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEee---cccccEEEEEEecCC-e-EEEEeCCCeEE
Q 013717          205 KKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIK---AHEDAVNAVAVSAGG-T-VYTGSADRKIR  276 (437)
Q Consensus       205 ~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~-~-l~~~~~dg~v~  276 (437)
                          .+|...|.+++|++   ..+++++.|+.+++||...++....+.   .|...|.+++|+|++ . +++++.||.|+
T Consensus       156 ----~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~  231 (325)
T d1pgua1         156 ----SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS  231 (325)
T ss_dssp             ----CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred             ----eecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccccccee
Confidence                35999999999988   457889999999999999887766654   567789999999974 4 89999999999


Q ss_pred             EecCCCCcccceeeEEeeCccccEEEEEEc---cCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC
Q 013717          277 VWAKPFNEKRHALIATLEKHKSAVNALALS---DDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA  353 (437)
Q Consensus       277 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~  353 (437)
                      +||++..    +.+..+.+|...+..+.|+   |+|++|++++.|+.|+|||+++++....+............++.+.+
T Consensus       232 iwd~~~~----~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (325)
T d1pgua1         232 CFDGKSG----EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG  307 (325)
T ss_dssp             EEETTTC----CEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEE
T ss_pred             eeeeccc----cccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECC
Confidence            9988654    3677778788777666555   68999999999999999999987644333222111122335566665


Q ss_pred             C-EEEEEeCCCcEEEeeC
Q 013717          354 G-LLMSGSADRTVRIWQR  370 (437)
Q Consensus       354 ~-~l~~~~~dg~i~iwd~  370 (437)
                      + +|++++.||.|++||+
T Consensus       308 ~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         308 NGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TTEEEEEETTSCEEEEET
T ss_pred             CCEEEEEECCCEEEEEEC
Confidence            4 8999999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.9e-32  Score=245.33  Aligned_cols=302  Identities=13%  Similarity=0.100  Sum_probs=205.3

Q ss_pred             CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeee-ccccCCCCcccEEEEEE------eCC--e-EEEEecCCeE
Q 013717           96 GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSIN-TFNDNDSSSGSVKSVTF------CDG--K-IFTAHQDCKI  164 (437)
Q Consensus        96 ~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~-~~~~~~~h~~~v~~l~~------~~~--~-l~s~~~dg~i  164 (437)
                      +|.+.|.++++++++|+|++.| +|+|||....+..... .......|...+..+..      .+.  . +++++.||.|
T Consensus        12 ~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v   91 (393)
T d1sq9a_          12 AHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL   91 (393)
T ss_dssp             CSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred             cccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcE
Confidence            9999999999999999999999 9999997764211100 00000124444333332      211  1 7789999999


Q ss_pred             EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-------CeEEEEECCCcEEEE
Q 013717          165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-------GLIYSVSWDKSLKIW  237 (437)
Q Consensus       165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~l~~~~~dg~i~iw  237 (437)
                      ++|++..............                    .......+...+..+++.+       .++++++.||.+++|
T Consensus        92 ~~w~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw  151 (393)
T d1sq9a_          92 LFYRITREDETKKVIFEKL--------------------DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW  151 (393)
T ss_dssp             EEEEEEECTTTCCEEEEEE--------------------CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEE
T ss_pred             EEEEccCCCceeeeecccc--------------------ceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEE
Confidence            9999865543222111000                    0000012444556665543       578999999999999


Q ss_pred             ECCCcc---------------eEEEe---ecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccc--eeeEEeeCcc
Q 013717          238 RASDLR---------------CLESI---KAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRH--ALIATLEKHK  297 (437)
Q Consensus       238 d~~~~~---------------~~~~~---~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~  297 (437)
                      |+....               .....   ..+...+.+++|+|++.|++|+.||.|++||+.......  +....+.+|.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~  231 (393)
T d1sq9a_         152 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNS  231 (393)
T ss_dssp             EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCC
T ss_pred             EeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeeccccccccccccccccccc
Confidence            974321               01111   134566899999999999999999999999987654221  1223456789


Q ss_pred             ccEEEEEEccCCCEEEEEeCCCc---EEEEECCCCccceEEe---------eeecccccceEEEEeeCC--EEEEEeCCC
Q 013717          298 SAVNALALSDDGTVLFSGACDRS---ILVWDREDSANHMVVT---------GALRGHGKAILCLINVAG--LLMSGSADR  363 (437)
Q Consensus       298 ~~i~~~~~~~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~---------~~~~~~~~~i~~~~~~~~--~l~~~~~dg  363 (437)
                      .+|.+++|+|||++|++|+.|++   |++||+++++....+.         ..+.+|...|++++|+++  +|++|+.|+
T Consensus       232 ~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~  311 (393)
T d1sq9a_         232 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG  311 (393)
T ss_dssp             CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred             ceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCC
Confidence            99999999999999999999874   8999999876544332         223589999999998765  999999999


Q ss_pred             cEEEeeCCCCCCeeeeeeecCCCCCe---------------------eEEEEEccCCC-----CceEEEEEecCCCcEEE
Q 013717          364 TVRIWQRGSDGRFGCLAVLEGHTKPV---------------------KSLTAVTEEGQ-----NGVVSVFSGSLDGEIRA  417 (437)
Q Consensus       364 ~i~iwd~~~~~~~~~~~~~~~h~~~v---------------------~~l~~~~~~~~-----~~~~~l~s~~~dg~i~i  417 (437)
                      +|+|||+++++   ++.++.+|.+.|                     .++.|.+.+..     .....|++++.|+.||+
T Consensus       312 ~v~vWd~~~g~---~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~  388 (393)
T d1sq9a_         312 KLRFWDVKTKE---RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW  388 (393)
T ss_dssp             EEEEEETTTTE---EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred             EEEEEECCCCC---EEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEE
Confidence            99999999876   888999987554                     44555443211     11235778888888888


Q ss_pred             Eee
Q 013717          418 WQV  420 (437)
Q Consensus       418 w~~  420 (437)
                      |+-
T Consensus       389 ~~~  391 (393)
T d1sq9a_         389 FRE  391 (393)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            864

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-31  Score=230.67  Aligned_cols=266  Identities=23%  Similarity=0.354  Sum_probs=214.7

Q ss_pred             eccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCC
Q 013717           64 TLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSS  141 (437)
Q Consensus        64 ~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h  141 (437)
                      +.++...+++++.||+|++|+... .+++..+ +|.+.|.+++|++++|++|+.| .|++|++..+.......     .+
T Consensus        21 ~~~d~~~l~sgs~Dg~i~vWd~~~-~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~-----~~   94 (293)
T d1p22a2          21 LQYDDQKIVSGLRDNTIKIWDKNT-LECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLI-----HH   94 (293)
T ss_dssp             EECCSSEEEEEESSSCEEEEESSS-CCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEEC-----CC
T ss_pred             EEEcCCEEEEEeCCCeEEEEECCC-CcEEEEEecCCCCEeeeecccceeeccccccccccccccccccccccc-----cc
Confidence            345678899999999999999976 4566677 9999999999999999999999 99999999864433332     23


Q ss_pred             cccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717          142 SGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN  221 (437)
Q Consensus       142 ~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  221 (437)
                      ...........+.++++..++.+++|+...........                           .+..|...+..+.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~v~~~~~~  147 (293)
T d1p22a2          95 CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR---------------------------VLVGHRAAVNVVDFD  147 (293)
T ss_dssp             CSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEE---------------------------EECCCSSCEEEEEEE
T ss_pred             ccccccccccccceeecccccceeEeeccccccccccc---------------------------cccccccccccceec
Confidence            34444444446669999999999999988765333222                           223588899999999


Q ss_pred             CCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEE
Q 013717          222 NGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVN  301 (437)
Q Consensus       222 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~  301 (437)
                      +..+++++.|+.|++||+++++.+..+.++...+..+.+++ ..+++++.||.|++||++...    .+....++...+.
T Consensus       148 ~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~  222 (293)
T d1p22a2         148 DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGA----CLRVLEGHEELVR  222 (293)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET-TEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEE
T ss_pred             ccccccccCCCceeeecCCCCcEEEEEcccccccccccCCC-CeEEEecCCCEEEEEecccce----eeeeecccceeee
Confidence            99999999999999999999999999999999998888763 349999999999999987543    5667777777776


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCcc-----ceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEee
Q 013717          302 ALALSDDGTVLFSGACDRSILVWDREDSAN-----HMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQ  369 (437)
Q Consensus       302 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd  369 (437)
                      .  +++++.+|++|+.||.|++||+.....     .......+.+|...|.++++++.+|++|+.||+|+|||
T Consensus       223 ~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         223 C--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             E--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred             e--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence            5  456788999999999999999754221     11244557889999999999999999999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.7e-30  Score=230.42  Aligned_cols=293  Identities=10%  Similarity=0.080  Sum_probs=204.6

Q ss_pred             eeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCcee-eeeccccCCCCcccEEEEEEeCC---eEEEEecCC
Q 013717           91 NSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWT-SINTFNDNDSSSGSVKSVTFCDG---KIFTAHQDC  162 (437)
Q Consensus        91 ~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~~---~l~s~~~dg  162 (437)
                      .++.+ +|.+.|++|+|+  +++||+|+.| +|+|||+..+... .....   .+|..+|.+++|+++   .|++|+.||
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~---~~h~~~V~~v~f~~~~~~~l~sg~~d~   79 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS---LRYKHPLLCCNFIDNTDLQIYVGTVQG   79 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE---EECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEe---cCCCCCEEEEEEeCCCCCEEEEccccc
Confidence            45566 999999999999  8999999999 9999999764221 11111   369999999999853   289999999


Q ss_pred             eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEE--EEeCCCeEEEEECCCcEEEEECC
Q 013717          163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTG--LAVNNGLIYSVSWDKSLKIWRAS  240 (437)
Q Consensus       163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~~dg~i~iwd~~  240 (437)
                      .|++|++...........                             .+......  .......+++++.++.+++||++
T Consensus        80 ~v~~w~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~  130 (342)
T d1yfqa_          80 EILKVDLIGSPSFQALTN-----------------------------NEANLGICRICKYGDDKLIAASWDGLIEVIDPR  130 (342)
T ss_dssp             CEEEECSSSSSSEEECBS-----------------------------CCCCSCEEEEEEETTTEEEEEETTSEEEEECHH
T ss_pred             ceeeeecccccccccccc-----------------------------cccccccccccccccccccccccccccceeecc
Confidence            999999987654433321                             12222222  22233899999999999999986


Q ss_pred             CcceEEEe----ec--ccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEc-cCCCEE
Q 013717          241 DLRCLESI----KA--HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALS-DDGTVL  312 (437)
Q Consensus       241 ~~~~~~~~----~~--~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l  312 (437)
                      ........    ..  .......+.+.+.+. +++++.|+.|++||++.......... .......+.+..+. .++..+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  209 (342)
T d1yfqa_         131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE-ESGLKYQIRDVALLPKEQEGY  209 (342)
T ss_dssp             HHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEE-ECSCSSCEEEEEECSGGGCEE
T ss_pred             ccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeee-ecccccceeeeEeecCCCCEE
Confidence            55433222    11  123344556666666 99999999999999976554333332 33344455555554 477899


Q ss_pred             EEEeCCCcEEEEECCCCccceE------E-----eeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeee
Q 013717          313 FSGACDRSILVWDREDSANHMV------V-----TGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCL  379 (437)
Q Consensus       313 ~~~~~dg~i~i~d~~~~~~~~~------~-----~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~  379 (437)
                      ++++.||.+.+|++........      .     .....+|...+.+++|+++  +|++|+.||.|+|||+.+++   .+
T Consensus       210 ~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~---~l  286 (342)
T d1yfqa_         210 ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK---KI  286 (342)
T ss_dssp             EEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE---EE
T ss_pred             EeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCc---EE
Confidence            9999999999999865422111      1     1112456667888888764  99999999999999999866   56


Q ss_pred             eeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          380 AVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       380 ~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      ..+..+ ..+..++|+|+++     +|++++.|+.+++|.......
T Consensus       287 ~~~~~~-~~~~~~~~s~~~~-----~l~~a~sdd~~~~~~~~~~~~  326 (342)
T d1yfqa_         287 KNFAKF-NEDSVVKIACSDN-----ILCLATSDDTFKTNAAIDQTI  326 (342)
T ss_dssp             EECCCC-SSSEEEEEEECSS-----EEEEEEECTHHHHCSSSCTTS
T ss_pred             EEecCC-CCCEEEEEEeCCC-----EEEEEEcCCcEEEeeeeCCCc
Confidence            666533 3455677777764     688888888999887654443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.1e-29  Score=218.71  Aligned_cols=252  Identities=17%  Similarity=0.167  Sum_probs=199.3

Q ss_pred             ceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeeccccC
Q 013717           61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTFNDN  138 (437)
Q Consensus        61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~  138 (437)
                      ++.+.|    +++++.||+|++|+....     ..+|...|.+++++ +..+++++.| +|++|+....      .    
T Consensus        18 ~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~------~----   78 (287)
T d1pgua2          18 ALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKH------E----   78 (287)
T ss_dssp             EEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEE------E----
T ss_pred             EEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCCeEEEEeecccccccccccc------c----
Confidence            455544    899999999999998642     12899999999999 8889999999 9999997651      1    


Q ss_pred             CCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEE
Q 013717          139 DSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTG  217 (437)
Q Consensus       139 ~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  217 (437)
                        ....+.++.+.++. ++..+.++.+.+|+..+++......                               +...+.+
T Consensus        79 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~  125 (287)
T d1pgua2          79 --FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-------------------------------LNSPGSA  125 (287)
T ss_dssp             --CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-------------------------------CSSCEEE
T ss_pred             --cccceeeeeeccCCceEEEeecccceeeeccceeeeeecc-------------------------------ccceeee
Confidence              23456778888665 6667778889999988776443332                               4456677


Q ss_pred             EEeCCCeEEEEECCC-cEEEEECCCcceEEEee-cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEee
Q 013717          218 LAVNNGLIYSVSWDK-SLKIWRASDLRCLESIK-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLE  294 (437)
Q Consensus       218 ~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  294 (437)
                      +..++..+++++.++ .+++|++...+....+. .+...+++++|+|++. |++|+.||.|++||+....   .....+.
T Consensus       126 ~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~---~~~~~~~  202 (287)
T d1pgua2         126 VSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE---VKTSRWA  202 (287)
T ss_dssp             EEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---EEECCSC
T ss_pred             eeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccc---ccccccc
Confidence            777777888887765 79999998776666554 4778899999999998 9999999999999986543   2233456


Q ss_pred             CccccEEEEEEccC----------CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCC
Q 013717          295 KHKSAVNALALSDD----------GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADR  363 (437)
Q Consensus       295 ~~~~~i~~~~~~~~----------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg  363 (437)
                      .|...|.+++|+|+          +.+|++|+.|++|++||++.+..   ....+.+|...|.++.|.++ .|++++.||
T Consensus       203 ~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~---~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~  279 (287)
T d1pgua2         203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK---IIKALNAHKDGVNNLLWETPSTLVSSGADA  279 (287)
T ss_dssp             CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC---CEEETTSSTTCEEEEEEEETTEEEEEETTS
T ss_pred             ccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe---EEEEeCCCCCCeEEEEECCCCEEEEEECCC
Confidence            78999999999874          46899999999999999976543   33446789999999998765 899999999


Q ss_pred             cEEEeeC
Q 013717          364 TVRIWQR  370 (437)
Q Consensus       364 ~i~iwd~  370 (437)
                      .|++|++
T Consensus       280 ~v~iW~i  286 (287)
T d1pgua2         280 CIKRWNV  286 (287)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            9999986

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.9e-29  Score=229.04  Aligned_cols=260  Identities=13%  Similarity=0.192  Sum_probs=182.4

Q ss_pred             ccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCc-
Q 013717          136 NDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA-  214 (437)
Q Consensus       136 ~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  214 (437)
                      ...++|.+.|.+++++++.+++++.|++|++||..+.+.........                        ....|... 
T Consensus         8 ~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~------------------------~~~~~~~~~   63 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSY------------------------SHFVHKSGL   63 (393)
T ss_dssp             EESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEE------------------------EEECCTTCE
T ss_pred             ecCCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeE------------------------eeeeccCCc
Confidence            33478999999999999889999999999999987654221111000                        00112222 


Q ss_pred             -----EEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEe----------ecccccEEEEEEecCC-----e-EEEEe
Q 013717          215 -----VTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESI----------KAHEDAVNAVAVSAGG-----T-VYTGS  270 (437)
Q Consensus       215 -----v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~----------~~~~~~v~~~~~~~~~-----~-l~~~~  270 (437)
                           ...+..+.   .++++++.||.|++|++........+          ..+...+..+++.++.     . +++++
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (393)
T d1sq9a_          64 HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD  143 (393)
T ss_dssp             EEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE
T ss_pred             eEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEc
Confidence                 22233333   56789999999999997544321111          1345567888887653     4 89999


Q ss_pred             CCCeEEEecCCCCccc-----------ce---eeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEe
Q 013717          271 ADRKIRVWAKPFNEKR-----------HA---LIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVT  336 (437)
Q Consensus       271 ~dg~v~iwd~~~~~~~-----------~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  336 (437)
                      .||.+++|++......           ..   .......+...+.+++|+|++ +|++|+.||+|++||+++++....+.
T Consensus       144 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~  222 (393)
T d1sq9a_         144 VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFE  222 (393)
T ss_dssp             TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred             CCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccc
Confidence            9999999987532210           00   111122345568899999998 89999999999999999876544332


Q ss_pred             --eeecccccceEEEEeeCC--EEEEEeCCCc---EEEeeCCCCCCee----------eeeeecCCCCCeeEEEEEccCC
Q 013717          337 --GALRGHGKAILCLINVAG--LLMSGSADRT---VRIWQRGSDGRFG----------CLAVLEGHTKPVKSLTAVTEEG  399 (437)
Q Consensus       337 --~~~~~~~~~i~~~~~~~~--~l~~~~~dg~---i~iwd~~~~~~~~----------~~~~~~~h~~~v~~l~~~~~~~  399 (437)
                        ..+.+|...|.+++|+++  +|++|+.|++   |++||+.+++...          ....+.+|.+.|++|+|+|++.
T Consensus       223 ~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~  302 (393)
T d1sq9a_         223 SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE  302 (393)
T ss_dssp             CCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS
T ss_pred             cccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC
Confidence              345679999999998754  9999999874   9999999876211          1123358999999999999884


Q ss_pred             CCceEEEEEecCCCcEEEEeeccCCC
Q 013717          400 QNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       400 ~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                           +|+|||.||+|++||+++++.
T Consensus       303 -----~l~S~s~D~~v~vWd~~~g~~  323 (393)
T d1sq9a_         303 -----TLCSAGWDGKLRFWDVKTKER  323 (393)
T ss_dssp             -----EEEEEETTSEEEEEETTTTEE
T ss_pred             -----eeEEECCCCEEEEEECCCCCE
Confidence                 899999999999999998754

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.4e-28  Score=214.19  Aligned_cols=297  Identities=13%  Similarity=0.055  Sum_probs=204.9

Q ss_pred             cceeeccccccccccCCCceeEEecCCCcc---eeeeecCccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeee
Q 013717           60 LSLQTLPSVPSLQKLSPDETINFSSASHLC---INSVQLGHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSI  132 (437)
Q Consensus        60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~---~~~~~~~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~  132 (437)
                      .++.|+|..+.+++++.||+|++|+.+...   .+...++|..+|.+++|+   +.+|++|+.| .|++|+...+.....
T Consensus        15 ~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~   94 (342)
T d1yfqa_          15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQA   94 (342)
T ss_dssp             EEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEE
T ss_pred             EEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccc
Confidence            578999999999999999999999985433   233333899999999998   5589999999 999999988543333


Q ss_pred             eccccCCCCcccEEEEEEe--CCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeec
Q 013717          133 NTFNDNDSSSGSVKSVTFC--DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIE  210 (437)
Q Consensus       133 ~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (437)
                      ...    .+........+.  ...+++++.|+++++||++.............                      .....
T Consensus        95 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~----------------------~~~~~  148 (342)
T d1yfqa_          95 LTN----NEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN----------------------SNNTK  148 (342)
T ss_dssp             CBS----CCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESC----------------------SSSSS
T ss_pred             ccc----cccccccccccccccccccccccccccceeeccccccceeeecccc----------------------ccccc
Confidence            321    222333333333  34499999999999999865432221110000                      00001


Q ss_pred             CCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEE---eecccccEEEEEEecC-Ce-EEEEeCCCeEEEecCCCCcc
Q 013717          211 HGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLES---IKAHEDAVNAVAVSAG-GT-VYTGSADRKIRVWAKPFNEK  285 (437)
Q Consensus       211 ~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~~~~-~~-l~~~~~dg~v~iwd~~~~~~  285 (437)
                      .......+......+++++.|+.|++||+...+....   .......+.+..+.+. +. +++++.||.+.+|++.....
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~  228 (342)
T d1yfqa_         149 VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD  228 (342)
T ss_dssp             SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC
T ss_pred             ceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcc
Confidence            2233445555668999999999999999987654332   2234555666666554 44 99999999999998764332


Q ss_pred             cce-----e------eEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC
Q 013717          286 RHA-----L------IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG  354 (437)
Q Consensus       286 ~~~-----~------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  354 (437)
                      ...     .      ......|...+++++|+|++++|++|+.||.|++||+++.+....+   ...|...+.+++++++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~---~~~~~~~~~~~s~~~~  305 (342)
T d1yfqa_         229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF---AKFNEDSVVKIACSDN  305 (342)
T ss_dssp             STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC---CCCSSSEEEEEEECSS
T ss_pred             eeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEe---cCCCCCEEEEEEeCCC
Confidence            111     0      1112346678999999999999999999999999999876533221   2346777899999999


Q ss_pred             EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEE
Q 013717          355 LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSL  392 (437)
Q Consensus       355 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l  392 (437)
                      ++++++.|+.+++|....       ..+..|...|..+
T Consensus       306 ~l~~a~sdd~~~~~~~~~-------~~~~~~~~~i~~~  336 (342)
T d1yfqa_         306 ILCLATSDDTFKTNAAID-------QTIELNASSIYII  336 (342)
T ss_dssp             EEEEEEECTHHHHCSSSC-------TTSCCCCCEEEEE
T ss_pred             EEEEEEcCCcEEEeeeeC-------CCccCCCCeEEEE
Confidence            999999999998886543       2344455555543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=4.8e-28  Score=216.83  Aligned_cols=311  Identities=10%  Similarity=0.052  Sum_probs=220.5

Q ss_pred             ccceeecc-ccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEecC---eEEEEeCCCCceeee
Q 013717           59 NLSLQTLP-SVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASSH---EINVYDRTGTTWTSI  132 (437)
Q Consensus        59 ~~~~~~~~-~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d---~v~vwd~~~~~~~~~  132 (437)
                      .+...|+| ....++.. ..|.|.+|+..... . ..++|...|.+++|+  |++|++++.+   .|++||.++++.+.+
T Consensus         5 ~~~~~fSP~dG~~~a~~-~~g~v~v~d~~~~~-~-~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~   81 (360)
T d1k32a3           5 KFAEDFSPLDGDLIAFV-SRGQAFIQDVSGTY-V-LKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKF   81 (360)
T ss_dssp             GGEEEEEECGGGCEEEE-ETTEEEEECTTSSB-E-EECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEEC
T ss_pred             hhcccccCCCCCEEEEE-ECCeEEEEECCCCc-E-EEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEe
Confidence            44567898 67777655 56899999986543 2 234899999999999  8888776643   799999998644332


Q ss_pred             eccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeec
Q 013717          133 NTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIE  210 (437)
Q Consensus       133 ~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (437)
                            ..|...|.+++|+|+.  |++++.++.+++|++.+++.....                              ..
T Consensus        82 ------~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~  125 (360)
T d1k32a3          82 ------EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE------------------------------RS  125 (360)
T ss_dssp             ------CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE------------------------------EC
T ss_pred             ------eCCCceEEeeeecccccccceeccccccccccccccceeeee------------------------------ec
Confidence                  4699999999999775  999999999999999887644332                              34


Q ss_pred             CCCcEEEEEeCC--CeEEEEE----------CCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEE
Q 013717          211 HGDAVTGLAVNN--GLIYSVS----------WDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRV  277 (437)
Q Consensus       211 ~~~~v~~~~~~~--~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~i  277 (437)
                      |...+.+++|+|  ++|+.+.          .++.+++||+.+++..... .+...+..++|+|+|+ |++++.++.+.+
T Consensus       126 ~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~s~~~~~~~  204 (360)
T d1k32a3         126 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPS  204 (360)
T ss_dssp             SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEEEESCCCCCE
T ss_pred             ccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec-ccccccccccccCCCCEEEEEeCCCceEc
Confidence            777888899988  6776543          3456999999887665444 4677889999999999 999999999999


Q ss_pred             ecCCCCccc---ceeeEEeeCccccEEEEEEccCCCEEEEEeCCC-----cEEEEECCCCccceEEeeeecccccceEEE
Q 013717          278 WAKPFNEKR---HALIATLEKHKSAVNALALSDDGTVLFSGACDR-----SILVWDREDSANHMVVTGALRGHGKAILCL  349 (437)
Q Consensus       278 wd~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~  349 (437)
                      ||.......   ......+..+...+..+.|++++..++++..+.     .+..++...+.  ....   ..+...+..+
T Consensus       205 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~  279 (360)
T d1k32a3         205 PDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD--YRMI---IPLESSILIY  279 (360)
T ss_dssp             ECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBC--EEEE---EECSSEEEEE
T ss_pred             ccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCc--eeEe---eecCCCceEE
Confidence            986533211   111222334445555566777777666554332     23333333322  1122   2233333433


Q ss_pred             EeeC--C---EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717          350 INVA--G---LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC  424 (437)
Q Consensus       350 ~~~~--~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  424 (437)
                      .+..  .   ++++++.++.|++||+.+++    +.   .|.+.|.+++|+||+.     +|++++.||.|++||++.++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~----~~---~~~~~v~~~~~SpDG~-----~l~~~~~Dg~i~v~d~~~~~  347 (360)
T d1k32a3         280 SVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VT---EVKNNLTDLRLSADRK-----TVMVRKDDGKIYTFPLEKPE  347 (360)
T ss_dssp             ECCCCCSHHHHHHCCCCCEEEEEEETTTCC----EE---EEEEEEEEEEECTTSC-----EEEEEETTSCEEEEESSCTT
T ss_pred             EEEecCCCeeEEEecCCCCEEEEEECCCCe----EE---EecCCcCEEEECCCCC-----EEEEEECCCeEEEEECCCCC
Confidence            3332  2   77888999999999998754    22   2345699999999984     79999999999999999886


Q ss_pred             CC
Q 013717          425 PN  426 (437)
Q Consensus       425 ~~  426 (437)
                      ..
T Consensus       348 ~~  349 (360)
T d1k32a3         348 DE  349 (360)
T ss_dssp             SC
T ss_pred             cc
Confidence            53

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=3.9e-23  Score=189.05  Aligned_cols=327  Identities=10%  Similarity=-0.017  Sum_probs=213.7

Q ss_pred             cccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccE
Q 013717           70 SLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSV  145 (437)
Q Consensus        70 ~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v  145 (437)
                      .+++.+.||+|.+||.... +++..+ .| ..+..++|+  |++|++++.| .|++||+++++......+....+|.+.+
T Consensus        34 ~~V~~~~dg~v~vwD~~t~-~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~  111 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSK-KIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE  111 (426)
T ss_dssp             EEEEETTTTEEEEEETTTC-SEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCC-cEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence            4577889999999999874 555667 55 469999999  9999999999 9999999997666666655555677788


Q ss_pred             EEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC
Q 013717          146 KSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN  222 (437)
Q Consensus       146 ~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  222 (437)
                      .+++|+|++   ++++..++.+++||..+++............                   ......+......+..++
T Consensus       112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~i~~s~  172 (426)
T d1hzua2         112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV-------------------DTQTYHPEPRVAAIIASH  172 (426)
T ss_dssp             ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS-------------------SSCCEESCCCEEEEEECS
T ss_pred             EeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCc-------------------cceeecCCCceeEEEECC
Confidence            888888665   4566689999999999876544332111000                   000012444555555555


Q ss_pred             --CeEE-EEECCCcEEEEECCCcceEE-EeecccccEEEEEEecCCe-E-EEEeCCCeEEEecCCCCcccceeeEEeeC-
Q 013717          223 --GLIY-SVSWDKSLKIWRASDLRCLE-SIKAHEDAVNAVAVSAGGT-V-YTGSADRKIRVWAKPFNEKRHALIATLEK-  295 (437)
Q Consensus       223 --~~l~-~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~-l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-  295 (437)
                        ..++ +....+.+.+++......+. ....+...+..++++|+++ + ++...+..+.+++.....    ....... 
T Consensus       173 d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~  248 (426)
T d1hzua2         173 EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRR----LSALVDVG  248 (426)
T ss_dssp             SSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTE----EEEEEECS
T ss_pred             CCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccccc----EEEEeccC
Confidence              3333 33445667777766654332 2335778899999999998 4 444567788899876543    3332221 


Q ss_pred             -ccccEEEEEEccCCC---EEEEEeCCCcEEEEECCCCcc---ceEEeeeecccccceEEEEeeCC--EEEE-------E
Q 013717          296 -HKSAVNALALSDDGT---VLFSGACDRSILVWDREDSAN---HMVVTGALRGHGKAILCLINVAG--LLMS-------G  359 (437)
Q Consensus       296 -~~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~--~l~~-------~  359 (437)
                       +......+.+...+.   ..+..+.|+.+.+|+......   .......+.+|...+..++++++  +|++       +
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~  328 (426)
T d1hzua2         249 KTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA  328 (426)
T ss_dssp             SCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSH
T ss_pred             CcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCc
Confidence             122222333333322   122334577777777654321   11245567788888887777765  7774       5


Q ss_pred             eCCCcEEEeeCCCCCCeeeee------eecCCCCCeeEEEEEccCCCCceEEEEEe----cCCCcEEEEeeccCCC
Q 013717          360 SADRTVRIWQRGSDGRFGCLA------VLEGHTKPVKSLTAVTEEGQNGVVSVFSG----SLDGEIRAWQVSVSCP  425 (437)
Q Consensus       360 ~~dg~i~iwd~~~~~~~~~~~------~~~~h~~~v~~l~~~~~~~~~~~~~l~s~----~~dg~i~iw~~~~~~~  425 (437)
                      +.|++|+|||+.+++....+.      .+..|...|..++|+|++..    +++++    +.||.|+|||.++.+.
T Consensus       329 ~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~----i~vs~~~~~~~~~~i~v~D~~T~k~  400 (426)
T d1hzua2         329 RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE----VWFSVWNGKNDSSALVVVDDKTLKL  400 (426)
T ss_dssp             HHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSE----EEEEECCCTTSCCEEEEEETTTTEE
T ss_pred             ccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCE----EEEEEecCCCCCCeEEEEECCCCeE
Confidence            568899999999877322221      23356678999999999863    55654    4688999999988763

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=1.2e-23  Score=192.16  Aligned_cols=310  Identities=11%  Similarity=0.017  Sum_probs=209.4

Q ss_pred             cccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccE
Q 013717           70 SLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSV  145 (437)
Q Consensus        70 ~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v  145 (437)
                      .+++.+.+|++.+||..... ++..+ .| ..+..++|+  |++|++++.| .|++||+.+++......+....+|.+.+
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~-v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~  111 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYE-IKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE  111 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCC-EEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCc-EEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence            35889999999999987744 44455 44 469999999  9999999999 9999999987665555555445677777


Q ss_pred             EEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC
Q 013717          146 KSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN  222 (437)
Q Consensus       146 ~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  222 (437)
                      .+..|++++   ++++..+++|++||..+++............                   ......+......+.+++
T Consensus       112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~v~~s~  172 (432)
T d1qksa2         112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY-------------------DEQEYHPEPRVAAILASH  172 (432)
T ss_dssp             ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT-------------------TTCCEESCCCEEEEEECS
T ss_pred             EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccc-------------------cceeccCCCceeEEEECC
Confidence            777787665   4788889999999999887554433111000                   000123566677788877


Q ss_pred             ---CeEEEEECCCcEEEEECCCcceEEEee-cccccEEEEEEecCCe-EEEEe-CCCeEEEecCCCCcccceeeEEee--
Q 013717          223 ---GLIYSVSWDKSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGGT-VYTGS-ADRKIRVWAKPFNEKRHALIATLE--  294 (437)
Q Consensus       223 ---~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~--  294 (437)
                         .++++...++.|.+||..+++...... .+...+..++|+|+|+ +++++ .++.+.++|......    ...+.  
T Consensus       173 dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~----~~~~~~g  248 (432)
T d1qksa2         173 YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL----VAIEDTG  248 (432)
T ss_dssp             SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE----EEEEECS
T ss_pred             CCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceE----EEEeccC
Confidence               345667778999999998887655433 3556789999999998 55554 467888888764321    11110  


Q ss_pred             ------------------------------------------CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccc
Q 013717          295 ------------------------------------------KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANH  332 (437)
Q Consensus       295 ------------------------------------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  332 (437)
                                                                .+...+....++|++..+++++.++..++|+.....  
T Consensus       249 ~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~--  326 (432)
T d1qksa2         249 GQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN--  326 (432)
T ss_dssp             SSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC--
T ss_pred             ccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC--
Confidence                                                      111234445555555556666666666666543221  


Q ss_pred             eEEeeeeccccc--ceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEe-
Q 013717          333 MVVTGALRGHGK--AILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSG-  409 (437)
Q Consensus       333 ~~~~~~~~~~~~--~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~-  409 (437)
                              .|..  ...++ +++..+++++.|+.+++|++.+.      ..+..|...|.+++|+|++..    ++++. 
T Consensus       327 --------~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~------~~l~~~~~~v~~~~fS~DG~~----v~~S~~  387 (432)
T d1qksa2         327 --------PEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEW------AGITEGQPRVVQGEFNKDGTE----VWFSVW  387 (432)
T ss_dssp             --------SSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHH------HTCCSSCCEEEEEEECTTSSE----EEEEEE
T ss_pred             --------CCCCeeeEEEE-EechhhcccccCCceEecccccc------cccCCCCCcEEEeEECCCCCE----EEEEEe
Confidence                    1111  11222 67789999999999999987542      233457778999999999863    44554 


Q ss_pred             ---cCCCcEEEEeeccCCC
Q 013717          410 ---SLDGEIRAWQVSVSCP  425 (437)
Q Consensus       410 ---~~dg~i~iw~~~~~~~  425 (437)
                         ..||.|+|||..+.+.
T Consensus       388 ~~~~~~g~i~i~D~~T~k~  406 (432)
T d1qksa2         388 NGKDQESALVVVDDKTLEL  406 (432)
T ss_dssp             CCTTSCCEEEEEETTTTEE
T ss_pred             cCCCCCCcEEEEECCCceE
Confidence               2478999999887753

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.90  E-value=1.4e-20  Score=163.37  Aligned_cols=258  Identities=14%  Similarity=0.135  Sum_probs=182.8

Q ss_pred             EEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--E-EEEecCCeEEEEeCCCCcccccccccCccccc
Q 013717          112 YAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--I-FTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDR  187 (437)
Q Consensus       112 ~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  187 (437)
                      ++++.+ .|.+||+++++  .+.++.    ....+..++|+|++  | ++++.++.|++||+.+++....+.        
T Consensus         6 V~~~~~~~v~v~D~~t~~--~~~~i~----~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~--------   71 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNK--VTATIP----VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP--------   71 (301)
T ss_dssp             EEETTTTEEEEEETTTTE--EEEEEE----CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--------
T ss_pred             EEECCCCEEEEEECCCCe--EEEEEE----CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee--------
Confidence            345566 99999999964  444442    33567899999775  4 577789999999999887544332        


Q ss_pred             eeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--C-eEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCC
Q 013717          188 LLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--G-LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG  264 (437)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  264 (437)
                                             ....+..+.+++  . .++++..++.+.+|+..+++....+. +.....++.++|++
T Consensus        72 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dg  127 (301)
T d1l0qa2          72 -----------------------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSPDG  127 (301)
T ss_dssp             -----------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTS
T ss_pred             -----------------------ccccccccccccccccccccccccceeeecccccceeeeecc-ccccceEEEeecCC
Confidence                                   223467888877  4 45556678899999999998888886 44567889999999


Q ss_pred             e--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC-CcEEEEECCCCccceEEeeeecc
Q 013717          265 T--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD-RSILVWDREDSANHMVVTGALRG  341 (437)
Q Consensus       265 ~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~  341 (437)
                      .  ++++..++.+.+|+.....    ....+. +...+..++++|+++++++++.+ +.+.+|+....+.    ......
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  198 (301)
T d1l0qa2         128 KKLYVTNNGDKTVSVINTVTKA----VINTVS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV----IDTVKV  198 (301)
T ss_dssp             SEEEEEETTTTEEEEEETTTTE----EEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE----EEEEEC
T ss_pred             Ceeeeeeccccceeeeeccccc----eeeecc-cCCCceEEEeeccccceeeecccccccccccccceee----eecccc
Confidence            8  4566678899999876543    444444 34567889999999988887765 5666777665432    222222


Q ss_pred             cccceEEEEee--CCEEEEEe---CCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEE
Q 013717          342 HGKAILCLINV--AGLLMSGS---ADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIR  416 (437)
Q Consensus       342 ~~~~i~~~~~~--~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  416 (437)
                       ......+.+.  +..++.+.   .++.|++||+.+++   .+..+.. ...+.+++|+|++..    ++++++.|+.|+
T Consensus       199 -~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~---~~~~~~~-~~~~~~va~spdg~~----l~va~~~~~~i~  269 (301)
T d1l0qa2         199 -EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK---ITARIPV-GPDPAGIAVTPDGKK----VYVALSFCNTVS  269 (301)
T ss_dssp             -SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE---EEEEEEC-CSSEEEEEECTTSSE----EEEEETTTTEEE
T ss_pred             -cCCcceeeccccccccccccccceeeeeeeeecCCCe---EEEEEcC-CCCEEEEEEeCCCCE----EEEEECCCCeEE
Confidence             2333444444  55554443   34689999999866   5555554 356899999999852    567889999999


Q ss_pred             EEeeccCCC
Q 013717          417 AWQVSVSCP  425 (437)
Q Consensus       417 iw~~~~~~~  425 (437)
                      +||+++++.
T Consensus       270 v~D~~t~~~  278 (301)
T d1l0qa2         270 VIDTATNTI  278 (301)
T ss_dssp             EEETTTTEE
T ss_pred             EEECCCCeE
Confidence            999998864

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.89  E-value=1.9e-22  Score=179.99  Aligned_cols=269  Identities=11%  Similarity=-0.008  Sum_probs=189.0

Q ss_pred             CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCC--eEEEEeCCCCcccccccccCc
Q 013717          108 HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDC--KIRVWQLTPTKHHKLKTTLPT  183 (437)
Q Consensus       108 ~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~  183 (437)
                      |+++|+++.+.|++||.+++...   .+    +|...|.+++|+|+.  |++++.+.  .|++||.++++....      
T Consensus        15 G~~~a~~~~g~v~v~d~~~~~~~---~~----~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~------   81 (360)
T d1k32a3          15 GDLIAFVSRGQAFIQDVSGTYVL---KV----PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKF------   81 (360)
T ss_dssp             GGCEEEEETTEEEEECTTSSBEE---EC----SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEEC------
T ss_pred             CCEEEEEECCeEEEEECCCCcEE---Ec----cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEe------
Confidence            89999998889999999885432   22    588999999999876  66665543  799999998764332      


Q ss_pred             cccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEe
Q 013717          184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVS  261 (437)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  261 (437)
                                               ..|...|.+++|+|  ++|++++.++.+++|++.+++....+..+...+.+++|+
T Consensus        82 -------------------------~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  136 (360)
T d1k32a3          82 -------------------------EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS  136 (360)
T ss_dssp             -------------------------CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred             -------------------------eCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhc
Confidence                                     24889999999999  899999999999999999999999998899999999999


Q ss_pred             cCCe-EEEEe----------CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 013717          262 AGGT-VYTGS----------ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSA  330 (437)
Q Consensus       262 ~~~~-l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  330 (437)
                      |+|+ |+.+.          .++.+++||+....     ...+..+...+..++|+|||++|++++.++.+.+||.....
T Consensus       137 pdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~-----~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~  211 (360)
T d1k32a3         137 DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-----IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN  211 (360)
T ss_dssp             TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-----EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred             cceeeeeeeccccccceeeccccceeeeccccCc-----eeeecccccccccccccCCCCEEEEEeCCCceEcccccccc
Confidence            9999 66443          35579999986542     33444567788999999999999999999999999976432


Q ss_pred             cceE---EeeeecccccceEE--EEeeCCEEEEEeCCC-----cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCC
Q 013717          331 NHMV---VTGALRGHGKAILC--LINVAGLLMSGSADR-----TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ  400 (437)
Q Consensus       331 ~~~~---~~~~~~~~~~~i~~--~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  400 (437)
                      ....   .......+......  +..++..++++..+.     .+..++...+.    ...+..+.+.+..+.+...+. 
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-  286 (360)
T d1k32a3         212 FSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD----YRMIIPLESSILIYSVPVHGE-  286 (360)
T ss_dssp             EECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBC----EEEEEECSSEEEEEECCCCCS-
T ss_pred             eeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCc----eeEeeecCCCceEEEEEecCC-
Confidence            1100   00011112222221  222233444433322     23334444322    334445556666666655442 


Q ss_pred             CceEEEEEecCCCcEEEEeeccCCC
Q 013717          401 NGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       401 ~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                       ...++++++.++.|++||+++++.
T Consensus       287 -~~~~~~~~~~~~~i~~~d~~~~~~  310 (360)
T d1k32a3         287 -FAAYYQGAPEKGVLLKYDVKTRKV  310 (360)
T ss_dssp             -HHHHHHCCCCCEEEEEEETTTCCE
T ss_pred             -CeeEEEecCCCCEEEEEECCCCeE
Confidence             223678889999999999987653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=2.5e-21  Score=176.89  Aligned_cols=280  Identities=11%  Similarity=0.096  Sum_probs=184.5

Q ss_pred             CEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccc
Q 013717          109 NFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVN  185 (437)
Q Consensus       109 ~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  185 (437)
                      -++++++.| .|+|||+.++  +.+.++.   .| ..+..++|+|++  +++++.|++|++||+.+++.......     
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~--~~~~~l~---~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i-----  101 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSK--KIVKVID---TG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI-----  101 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTC--SEEEEEE---CC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE-----
T ss_pred             EEEEEEcCCCEEEEEECCCC--cEEEEEe---CC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEE-----
Confidence            355778888 9999999995  5555552   23 468999999876  88999999999999998864322210     


Q ss_pred             cceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeE-EEEECCCcEEEEECCCcceEEEeecccccEE------
Q 013717          186 DRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLI-YSVSWDKSLKIWRASDLRCLESIKAHEDAVN------  256 (437)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~------  256 (437)
                                          ....+|...+.+++|+|  +++ +++..++.+++||..+++++..+..+...+.      
T Consensus       102 --------------------~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~  161 (426)
T d1hzua2         102 --------------------KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP  161 (426)
T ss_dssp             --------------------ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEES
T ss_pred             --------------------eCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecC
Confidence                                00113555566666766  555 5556899999999999998887765554444      


Q ss_pred             -----EEEEecCCe-E-EEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCC
Q 013717          257 -----AVAVSAGGT-V-YTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDRED  328 (437)
Q Consensus       257 -----~~~~~~~~~-l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  328 (437)
                           .+..++++. + .+....+.+.+++.....   ........+...+..+.|+|++++++++. .+..+.+++..+
T Consensus       162 ~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~  238 (426)
T d1hzua2         162 EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID---NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKD  238 (426)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSS---SCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTT
T ss_pred             CCceeEEEECCCCCEEEEecCCCCeEEEEEecccc---ceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccc
Confidence                 344444444 2 222233444444332211   11222335677889999999999887765 456788999987


Q ss_pred             CccceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCC----CeeeeeeecCCCCCeeEEEEEccCCCC
Q 013717          329 SANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDG----RFGCLAVLEGHTKPVKSLTAVTEEGQN  401 (437)
Q Consensus       329 ~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~h~~~v~~l~~~~~~~~~  401 (437)
                      ++...........+......+.....   ..+..+.|+.+.+|+.....    .++....+.+|...+..++|+|++.  
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~--  316 (426)
T d1hzua2         239 RRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSS--  316 (426)
T ss_dssp             TEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCS--
T ss_pred             ccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCc--
Confidence            76443332222223333333333333   33445568888888876542    2357788999999999999999985  


Q ss_pred             ceEEEE-------EecCCCcEEEEeeccCCCCC
Q 013717          402 GVVSVF-------SGSLDGEIRAWQVSVSCPNS  427 (437)
Q Consensus       402 ~~~~l~-------s~~~dg~i~iw~~~~~~~~~  427 (437)
                         +|+       +++.|++|++||+++++...
T Consensus       317 ---~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~  346 (426)
T d1hzua2         317 ---HLYVDTTFNPDARISQSVAVFDLKNLDAKY  346 (426)
T ss_dssp             ---EEEECCTTCSSHHHHTCEEEEETTCTTSCC
T ss_pred             ---eEEEeecCCCCcccCCEEEEEECCCCCcCe
Confidence               566       46678999999999887543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.86  E-value=9.8e-19  Score=151.46  Aligned_cols=261  Identities=15%  Similarity=0.161  Sum_probs=184.9

Q ss_pred             ccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEE-EEecC-eEEEEeCCCCceeeeeccccCCCCcccEE
Q 013717           71 LQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLY-AASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVK  146 (437)
Q Consensus        71 ~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~-s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~  146 (437)
                      .++.+.|++|.+||.... +.+..+.....+..++|+  |++|+ +++.+ .|++||+.++  +.+..+.   .+ ..+.
T Consensus         5 yV~~~~~~~v~v~D~~t~-~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~--~~~~~~~---~~-~~~~   77 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSN-KVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--NVIATVP---AG-SSPQ   77 (301)
T ss_dssp             EEEETTTTEEEEEETTTT-EEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--EEEEEEE---CS-SSEE
T ss_pred             EEEECCCCEEEEEECCCC-eEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC--ceeeeee---cc-cccc
Confidence            345678999999999764 455566444567899999  78775 55566 9999999985  4444442   23 3568


Q ss_pred             EEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-
Q 013717          147 SVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-  222 (437)
Q Consensus       147 ~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  222 (437)
                      .+.++++.   ++++..++.+.+|+..+++....+.                               +.....++.+++ 
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~d  126 (301)
T d1l0qa2          78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-------------------------------TGKSPLGLALSPD  126 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-------------------------------CSSSEEEEEECTT
T ss_pred             ccccccccccccccccccceeeecccccceeeeecc-------------------------------ccccceEEEeecC
Confidence            89998654   6677788899999998876544332                               455677888887 


Q ss_pred             -Ce-EEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeC-CCeEEEecCCCCcccceeeEEeeCccc
Q 013717          223 -GL-IYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSA-DRKIRVWAKPFNEKRHALIATLEKHKS  298 (437)
Q Consensus       223 -~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~  298 (437)
                       .. ++++..++.+.+|+..+.+.+..+.. ...+..++++|++. ++++.. ++.+.+|+....    ....... ...
T Consensus       127 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~  200 (301)
T d1l0qa2         127 GKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN----SVIDTVK-VEA  200 (301)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----EEEEEEE-CSS
T ss_pred             CCeeeeeeccccceeeeeccccceeeeccc-CCCceEEEeeccccceeeecccccccccccccce----eeeeccc-ccC
Confidence             44 45666788999999999988888764 45688999999988 655555 466777765432    2333333 446


Q ss_pred             cEEEEEEccCCCEEEEEeC---CCcEEEEECCCCccceEEeeeecccccceEEEEeeC--CEE-EEEeCCCcEEEeeCCC
Q 013717          299 AVNALALSDDGTVLFSGAC---DRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLL-MSGSADRTVRIWQRGS  372 (437)
Q Consensus       299 ~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l-~~~~~dg~i~iwd~~~  372 (437)
                      .+..++++++++.++.+..   ++.|++||+.+++..    ..+.. ...+.++++++  ++| ++++.|+.|++||+++
T Consensus       201 ~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~----~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t  275 (301)
T d1l0qa2         201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT----ARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT  275 (301)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE----EEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             CcceeeccccccccccccccceeeeeeeeecCCCeEE----EEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence            6788999999998876543   468999999887633    22222 33456677665  455 6777899999999998


Q ss_pred             CCCeeeeeeec
Q 013717          373 DGRFGCLAVLE  383 (437)
Q Consensus       373 ~~~~~~~~~~~  383 (437)
                      ++   .+.++.
T Consensus       276 ~~---~~~~~~  283 (301)
T d1l0qa2         276 NT---ITATMA  283 (301)
T ss_dssp             TE---EEEEEE
T ss_pred             Ce---EEEEEe
Confidence            76   555553

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=3.2e-20  Score=163.61  Aligned_cols=269  Identities=11%  Similarity=0.087  Sum_probs=178.7

Q ss_pred             CEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--E-EEEecCCeEEEEeCCCCcccccccccCcc
Q 013717          109 NFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--I-FTAHQDCKIRVWQLTPTKHHKLKTTLPTV  184 (437)
Q Consensus       109 ~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  184 (437)
                      +|+++++.| .|.|||+++++  .+..+.. ..+...+.+++|+|++  + ++++.++.|.+||+.+++...........
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~--~~~~i~~-~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~   78 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMA--VDKVITI-ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTE--EEEEEEC-TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred             eEEEEEcCCCEEEEEECCCCe--EEEEEEC-CCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCc
Confidence            689999999 99999999964  3443321 2345668899999875  4 56778999999999998755443321100


Q ss_pred             ccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE------------CCCcEEEEECCCcceEEEeec
Q 013717          185 NDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS------------WDKSLKIWRASDLRCLESIKA  250 (437)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~  250 (437)
                                               .+...+..+++++  ++++++.            .++.+.+||..+++....+. 
T Consensus        79 -------------------------~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-  132 (337)
T d1pbyb_          79 -------------------------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-  132 (337)
T ss_dssp             -------------------------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-
T ss_pred             -------------------------ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-
Confidence                                     0112233566666  5555554            46789999999999888887 


Q ss_pred             ccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccc-----------------------cEEEEEEc
Q 013717          251 HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKS-----------------------AVNALALS  306 (437)
Q Consensus       251 ~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-----------------------~i~~~~~~  306 (437)
                      ....+..++++|+|+ +++++.  .+.+||.....    ....+..+..                       ........
T Consensus       133 ~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (337)
T d1pbyb_         133 APRQITMLAWARDGSKLYGLGR--DLHVMDPEAGT----LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTAR  206 (337)
T ss_dssp             CCSSCCCEEECTTSSCEEEESS--SEEEEETTTTE----EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEB
T ss_pred             ccCCceEEEEcCCCCEEEEEcC--CcceeeeecCc----EEEEeecCCccccceecCCcceeeccccccceeeeeeeeee
Confidence            455688999999999 777754  46778876543    2222221110                       01111111


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecC
Q 013717          307 DDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEG  384 (437)
Q Consensus       307 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  384 (437)
                      .+...+..+..++.+.+|+..++....   .....+......+.+.++  +++.+  ++.|++||+.+++   .+..+. 
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~---~~~~~~-  277 (337)
T d1pbyb_         207 KDIDPADPTAYRTGLLTMDLETGEMAM---REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA---SIKRVP-  277 (337)
T ss_dssp             TTSCTTSGGGEEEEEEEEETTTCCEEE---EEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE---EEEEEE-
T ss_pred             eccceeeecccCccEEEEEcCCCcEEE---EEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCc---EEEEEc-
Confidence            222223333446679999998765332   223445666666666665  54443  5889999999876   555554 


Q ss_pred             CCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCC
Q 013717          385 HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPN  426 (437)
Q Consensus       385 h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  426 (437)
                      +...+.+++|+|++.     +|++++.||.|++||+++.+..
T Consensus       278 ~~~~~~~~~~s~dG~-----~l~v~~~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         278 LPHSYYSVNVSTDGS-----TVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             CSSCCCEEEECTTSC-----EEEEESBSSEEEEEETTTCCEE
T ss_pred             CCCCEEEEEECCCCC-----EEEEEeCCCcEEEEECCCCcEE
Confidence            567789999999985     7889999999999999987653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=1.4e-19  Score=160.18  Aligned_cols=274  Identities=9%  Similarity=0.054  Sum_probs=175.7

Q ss_pred             EEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCccccc
Q 013717          104 IAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKL  177 (437)
Q Consensus       104 l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~  177 (437)
                      ++|+  +++|++++.+ .|.+||+++++  .+.++.  ..|...+.+++|+|++   ++++..++.|.+||+.+++....
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~--~~~t~~--~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~   77 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDT--VYKSCV--MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH   77 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTE--EEEEEE--CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCC--EEEEEE--cCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeee
Confidence            3566  8999999999 99999999964  444332  1456678899999875   46677899999999998875543


Q ss_pred             ccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE------------CCCcEEEEECCCcc
Q 013717          178 KTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS------------WDKSLKIWRASDLR  243 (437)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~------------~dg~i~iwd~~~~~  243 (437)
                      ........                        .+...+..+++++  ++++++.            .++.+.+||..+++
T Consensus        78 ~~~~~~~~------------------------~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~  133 (346)
T d1jmxb_          78 ANLSSVPG------------------------EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL  133 (346)
T ss_dssp             EESCCSTT------------------------EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred             eccccccc------------------------ccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccce
Confidence            32111000                        0111233456665  4454443            57889999998877


Q ss_pred             eEEEeec--ccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC------------
Q 013717          244 CLESIKA--HEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG------------  309 (437)
Q Consensus       244 ~~~~~~~--~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------  309 (437)
                      ....+..  ....+..+.+++++++++.+  +.+.+|++....    .+..+..+ .....+.++|++            
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  206 (346)
T d1jmxb_         134 EAKPVRTFPMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGK----YTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHE  206 (346)
T ss_dssp             GBCCSEEEECCSSCCCEEECTTSCEEEES--SSEEEECTTTCC----EEEEECST-TCCCTTBCCCBCCCCCCCCCTTCE
T ss_pred             eeeEEEeeeccCceEEEEecCCCEEEEeC--CcceEEEccCCC----EEEEEecC-CCccceEEeccccEEEEEecCCCc
Confidence            6554432  23456667777888755543  568889876433    33333221 122223333333            


Q ss_pred             --------------CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCC
Q 013717          310 --------------TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSD  373 (437)
Q Consensus       310 --------------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~  373 (437)
                                    ..++++..++.+.+||+.++.....   ....+...+....+.++  +++... ++.|++||..++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~  282 (346)
T d1jmxb_         207 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ---EFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR  282 (346)
T ss_dssp             EEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEE---EEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT
T ss_pred             eEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEE---EeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCC
Confidence                          3344455566788888876653322   23445666666665543  555544 457999999986


Q ss_pred             CCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          374 GRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       374 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      +   .+..+. +...+.+++|+|++.     +|++++.||.|++||+++.+.
T Consensus       283 ~---~~~~~~-~~~~~~~va~s~DG~-----~l~v~~~d~~v~v~D~~t~~~  325 (346)
T d1jmxb_         283 K---LIKAAN-LDHTYYCVAFDKKGD-----KLYLGGTFNDLAVFNPDTLEK  325 (346)
T ss_dssp             E---EEEEEE-CSSCCCEEEECSSSS-----CEEEESBSSEEEEEETTTTEE
T ss_pred             c---EEEEEc-CCCCEEEEEEcCCCC-----EEEEEeCCCcEEEEECccCCE
Confidence            6   555554 445799999999985     688999999999999998764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=1.4e-17  Score=151.63  Aligned_cols=231  Identities=12%  Similarity=0.077  Sum_probs=152.0

Q ss_pred             CCE-EEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCc
Q 013717          108 HNF-LYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPT  183 (437)
Q Consensus       108 ~~~-l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  183 (437)
                      .++ +++.+.+ .|.|||..++  +.+..+.   .+ ..+..++|+|++  +++++.|++|++||+.+++...... ++ 
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~--~v~~~~~---~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~-i~-  102 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTY--EIKTVLD---TG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE-IK-  102 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTC--CEEEEEE---CS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE-EE-
T ss_pred             CcEEEEEEcCCCEEEEEECCCC--cEEEEEe---CC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEE-Ee-
Confidence            344 5788888 9999999995  4455552   23 469999999876  8889999999999998775322111 00 


Q ss_pred             cccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--Ce-EEEEECCCcEEEEECCCcceEEEeec----------
Q 013717          184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GL-IYSVSWDKSLKIWRASDLRCLESIKA----------  250 (437)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~-l~~~~~dg~i~iwd~~~~~~~~~~~~----------  250 (437)
                                             ...+|...+.+..|+|  ++ ++++..++.|++||..+++.+..+..          
T Consensus       103 -----------------------~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~  159 (432)
T d1qksa2         103 -----------------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY  159 (432)
T ss_dssp             -----------------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE
T ss_pred             -----------------------cCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceec
Confidence                                   0012444455555665  55 47788899999999999998887653          


Q ss_pred             -ccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-CCcEEEEEC
Q 013717          251 -HEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-DRSILVWDR  326 (437)
Q Consensus       251 -~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~  326 (437)
                       +......+.++|++.  +++...++.|.+||......  ..+..+ .+...+..++|+|+|+++++++. ++.+.++|.
T Consensus       160 ~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~--~~~~~i-~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~  236 (432)
T d1qksa2         160 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN--LKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDT  236 (432)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE--EEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred             cCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCc--ceEEEE-cccCccccceECCCCCEEEEeccccceEEEeec
Confidence             345567888999987  56677789999998764321  122223 24567889999999998877765 557888898


Q ss_pred             CCCccceEEeee-ecccccceEEEEeeCC--EEEEE-eCCCcEEEeeCCC
Q 013717          327 EDSANHMVVTGA-LRGHGKAILCLINVAG--LLMSG-SADRTVRIWQRGS  372 (437)
Q Consensus       327 ~~~~~~~~~~~~-~~~~~~~i~~~~~~~~--~l~~~-~~dg~i~iwd~~~  372 (437)
                      ...+........ ...|......+.....  ..++. ..++.|.+|+...
T Consensus       237 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~  286 (432)
T d1qksa2         237 KEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP  286 (432)
T ss_dssp             TTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             ccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccc
Confidence            776533222111 1123333333333322  33333 2477888887654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=2.6e-18  Score=151.14  Aligned_cols=267  Identities=8%  Similarity=0.007  Sum_probs=177.5

Q ss_pred             ccccccCCCceeEEecCCCcceeeeec---CccCCeEEEEee--CCEEE-EEecC-eEEEEeCCCCceeeeeccccCCCC
Q 013717           69 PSLQKLSPDETINFSSASHLCINSVQL---GHKLPIGCIAVH--HNFLY-AASSH-EINVYDRTGTTWTSINTFNDNDSS  141 (437)
Q Consensus        69 ~~~~s~s~dg~i~~~~~~~~~~~~~~~---~h~~~V~~l~~~--~~~l~-s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h  141 (437)
                      ..+++.+.|++|.+||.... +++..+   .+...+.+++|+  |++|+ +++.+ .|.+||+.+++............+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~-~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~   80 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM-AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT-EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred             eEEEEEcCCCEEEEEECCCC-eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccc
Confidence            35778899999999999875 444444   345678899999  78774 55667 999999999654443333222223


Q ss_pred             cccEEEEEEeCCe--EEEEe------------cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeecccee
Q 013717          142 SGSVKSVTFCDGK--IFTAH------------QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKL  207 (437)
Q Consensus       142 ~~~v~~l~~~~~~--l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (437)
                      ...+..++|+++.  ++++.            .+..+.+||..+++....+.                            
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~----------------------------  132 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE----------------------------  132 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE----------------------------
T ss_pred             ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc----------------------------
Confidence            4556678898765  55554            45678888888776443332                            


Q ss_pred             eecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCC---------------------
Q 013717          208 WIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG---------------------  264 (437)
Q Consensus       208 ~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---------------------  264 (437)
                         +...+.++++++  +++++++.  .+.+||..+++....+..+... ....+.+++                     
T Consensus       133 ---~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (337)
T d1pbyb_         133 ---APRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTAR  206 (337)
T ss_dssp             ---CCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEB
T ss_pred             ---ccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeee
Confidence               445677888888  67777754  4788999999888776532211 111111111                     


Q ss_pred             ---e-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeec
Q 013717          265 ---T-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALR  340 (437)
Q Consensus       265 ---~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  340 (437)
                         . ...+..++.+.+||.....   .....+..+...+..+.++|++.+++.+  ++.|++||+.+++......    
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~----  277 (337)
T d1pbyb_         207 KDIDPADPTAYRTGLLTMDLETGE---MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP----  277 (337)
T ss_dssp             TTSCTTSGGGEEEEEEEEETTTCC---EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE----
T ss_pred             eccceeeecccCccEEEEEcCCCc---EEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc----
Confidence               1 2222334567888776543   2233445567788899999999988776  5889999999876443322    


Q ss_pred             ccccceEEEEee--CCEEEEEeCCCcEEEeeCCCCCCeeeeeeec
Q 013717          341 GHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFGCLAVLE  383 (437)
Q Consensus       341 ~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  383 (437)
                       +...+.+++++  +.+|++++.|+.|++||.++.+   .+.++.
T Consensus       278 -~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~---~v~~i~  318 (337)
T d1pbyb_         278 -LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE---KKGQVD  318 (337)
T ss_dssp             -CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC---EEEEEE
T ss_pred             -CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc---EEEEEE
Confidence             33445566665  5599999999999999999877   455443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.4e-17  Score=144.87  Aligned_cols=277  Identities=9%  Similarity=0.155  Sum_probs=179.3

Q ss_pred             EEEEecC-eEEEEeCCCC-ceeeeeccccCCCCcccEEEEEEeCCe--E-EEEecCCeEEEEeCCCCcccccccccCccc
Q 013717          111 LYAASSH-EINVYDRTGT-TWTSINTFNDNDSSSGSVKSVTFCDGK--I-FTAHQDCKIRVWQLTPTKHHKLKTTLPTVN  185 (437)
Q Consensus       111 l~s~~~d-~v~vwd~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~--l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  185 (437)
                      +++++.+ .|++|+++.. ....+..+    .|.+.+..|+|+|++  | +++..|+.|++|++............    
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~----~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~----   78 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVV----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE----   78 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEE----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE----
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEE----cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeee----
Confidence            4666677 9999999753 33444443    478899999999886  5 44556899999999865432211100    


Q ss_pred             cceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC-CCcEEEEECCCcceEEEe--ecccccEEEEEE
Q 013717          186 DRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW-DKSLKIWRASDLRCLESI--KAHEDAVNAVAV  260 (437)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~  260 (437)
                                             ..+...+..++++|  ++|++++. ++.|.+|+..........  ..+...+.++.+
T Consensus        79 -----------------------~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~  135 (333)
T d1ri6a_          79 -----------------------SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANI  135 (333)
T ss_dssp             -----------------------EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEE
T ss_pred             -----------------------cccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEe
Confidence                                   12445567899998  77887774 678999988766544333  346667889999


Q ss_pred             ecCCe-EEEEe-CCCeEEEecCCCCcccceeeE--EeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCccceEE
Q 013717          261 SAGGT-VYTGS-ADRKIRVWAKPFNEKRHALIA--TLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSANHMVV  335 (437)
Q Consensus       261 ~~~~~-l~~~~-~dg~v~iwd~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~  335 (437)
                      +|+++ +++++ .+..|.+|+............  ...........++|++++.+++... ..+...+|+..........
T Consensus       136 s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  215 (333)
T d1ri6a_         136 SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC  215 (333)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE
T ss_pred             eecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceee
Confidence            99998 55444 567899998765432221111  1223445678999999998876654 5667888887654333322


Q ss_pred             eeeec------ccccceEE--EEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEE
Q 013717          336 TGALR------GHGKAILC--LINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSV  406 (437)
Q Consensus       336 ~~~~~------~~~~~i~~--~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l  406 (437)
                      .....      ........  +..+++ .++++..++.+.+|++........+.....+...+.+++|+|++..    ++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~----l~  291 (333)
T d1ri6a_         216 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKY----LI  291 (333)
T ss_dssp             EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSE----EE
T ss_pred             eeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCE----EE
Confidence            22111      11122333  344455 5556667889999998876533333334445567889999999852    45


Q ss_pred             EEecCCCcEEEEeecc
Q 013717          407 FSGSLDGEIRAWQVSV  422 (437)
Q Consensus       407 ~s~~~dg~i~iw~~~~  422 (437)
                      +++..++.|++|+++.
T Consensus       292 va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         292 AAGQKSHHISVYEIVG  307 (333)
T ss_dssp             EECTTTCEEEEEEEET
T ss_pred             EEECCCCeEEEEEEEC
Confidence            5556779999997754

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.77  E-value=6.1e-16  Score=138.12  Aligned_cols=290  Identities=8%  Similarity=-0.040  Sum_probs=177.9

Q ss_pred             CccCCeEEEEee--CCEEEEEe-----cC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEe------
Q 013717           96 GHKLPIGCIAVH--HNFLYAAS-----SH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAH------  159 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~-----~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~------  159 (437)
                      .+..++.+++++  |+.++...     .. .|.+||..++  +.+..+   ..+.  ...++|+|++  |++++      
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg--~~~~~~---~~~~--~~~~a~SpDG~~l~va~~~~~~~   90 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSG--SILGHV---NGGF--LPNPVAAHSGSEFALASTSFSRI   90 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCC--CEEEEE---eCCC--CccEEEcCCCCEEEEEeecCCcc
Confidence            678889999998  77776542     23 7999999885  444444   2232  3368999876  55543      


Q ss_pred             ----cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEE--EEECC
Q 013717          160 ----QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIY--SVSWD  231 (437)
Q Consensus       160 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~--~~~~d  231 (437)
                          .++.|.+||..+++....+........                    .   -......+.+++  +.++  ....+
T Consensus        91 ~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~--------------------~---~~~~~~~~~~s~dg~~~~v~~~~~~  147 (373)
T d2madh_          91 AKGKRTDYVEVFDPVTFLPIADIELPDAPRF--------------------D---VGPYSWMNANTPNNADLLFFQFAAG  147 (373)
T ss_pred             cccccceEEEEEECCCCcEEEEEecCCccee--------------------E---eccCCCcEEEEeCCCcEEEEEEcCC
Confidence                468899999998875544321100000                    0   000112334443  3333  33445


Q ss_pred             CcEEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeC--ccccEEEEEEcc
Q 013717          232 KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEK--HKSAVNALALSD  307 (437)
Q Consensus       232 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~i~~~~~~~  307 (437)
                      +.+.+|+....+.....    ....++.++|++.  +++.+.|+.+.+|+................  .......+.+.+
T Consensus       148 ~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (373)
T d2madh_         148 PAVGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK  223 (373)
T ss_pred             CceEEeeccCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC
Confidence            67888888776654443    3466888999987  678899999999988754432222221111  122334556666


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCccceEEeeeec----------ccccceEEEEee----------CCEEEEEeCCCcEEE
Q 013717          308 DGTVLFSGACDRSILVWDREDSANHMVVTGALR----------GHGKAILCLINV----------AGLLMSGSADRTVRI  367 (437)
Q Consensus       308 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~~~~i~~~~~~----------~~~l~~~~~dg~i~i  367 (437)
                      ++.+ +..+.++.+.+|+...............          ........+..+          +..++....++.+.+
T Consensus       224 ~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~  302 (373)
T d2madh_         224 SGRI-VWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS  302 (373)
T ss_pred             CceE-EEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEE
Confidence            6644 4556788999999876542211111100          000111122222          225566777889999


Q ss_pred             eeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCC
Q 013717          368 WQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNS  427 (437)
Q Consensus       368 wd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  427 (437)
                      ||..+++   .+..+. +...+.+++|+|++..   .++++++.|+.|++||+.+++...
T Consensus       303 ~d~~t~~---~~~~~~-~~~~~~~~a~spDG~~---~l~vt~~~d~~v~v~D~~tg~~~~  355 (373)
T d2madh_         303 VTGLVGQ---TSSQIS-LGHDVDAISVAQDGGP---DLYALSAGTEVLHIYDAGAGDQDQ  355 (373)
T ss_pred             EECCCCc---EEEEec-CCCCeeEEEECCCCCE---EEEEEeCCCCeEEEEECCCCCEEE
Confidence            9999877   555554 6677999999999853   356789999999999999997643

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.77  E-value=2.4e-17  Score=145.51  Aligned_cols=280  Identities=8%  Similarity=-0.027  Sum_probs=180.9

Q ss_pred             eeeccccccccccCCCceeEEecCCCcceeeeec--CccCCeEEEEee--CCEEE-EEecC-eEEEEeCCCCceeeeecc
Q 013717           62 LQTLPSVPSLQKLSPDETINFSSASHLCINSVQL--GHKLPIGCIAVH--HNFLY-AASSH-EINVYDRTGTTWTSINTF  135 (437)
Q Consensus        62 ~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~--~h~~~V~~l~~~--~~~l~-s~~~d-~v~vwd~~~~~~~~~~~~  135 (437)
                      +.+.+..+.+++.+.+++|.+||+... +++.++  .|...+.+++|+  |++++ ++..+ .|.+||+.+++.......
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~-~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASD-TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTT-EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCC-CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence            456788899999999999999999875 555554  677788999998  77764 55566 999999999643322221


Q ss_pred             c-cCCCCcccEEEEEEeCCe--EEEEe------------cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEE
Q 013717          136 N-DNDSSSGSVKSVTFCDGK--IFTAH------------QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTV  200 (437)
Q Consensus       136 ~-~~~~h~~~v~~l~~~~~~--l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (437)
                      . ....+...+..++|++++  +++++            .++.+.+|+..+++....+...                   
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------------------  141 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-------------------  141 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-------------------
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEee-------------------
Confidence            1 111233456688999765  54443            4778888988776644333211                   


Q ss_pred             eeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe--------------
Q 013717          201 RRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--------------  265 (437)
Q Consensus       201 ~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------  265 (437)
                               .....+..+.+.+ ..++..  ++.+.+|++.+++.+..+..+. ....+.++|++.              
T Consensus       142 ---------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (346)
T d1jmxb_         142 ---------PMPRQVYLMRAADDGSLYVA--GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSM  209 (346)
T ss_dssp             ---------ECCSSCCCEEECTTSCEEEE--SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred             ---------eccCceEEEEecCCCEEEEe--CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEe
Confidence                     1222334444555 444443  3568999999988887775332 223333344332              


Q ss_pred             -------------EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccc
Q 013717          266 -------------VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANH  332 (437)
Q Consensus       266 -------------l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  332 (437)
                                   ++++..++.+.+||+....   ........+...+..+.+++++.+++... ++.|.+||..+++..
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~  285 (346)
T d1jmxb_         210 LYTIARFKDDKQDPATADLLYGYLSVDLKTGK---THTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLI  285 (346)
T ss_dssp             EEEEEEC-------CCCEEEEEEEEEETTTCC---EEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEE
T ss_pred             eeeeeeeccCceeEeeccCCceEEEEECCCCc---eEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEE
Confidence                         2333445567777765433   23334456777889999999988887765 457999999887643


Q ss_pred             eEEeeeecccccceEEEEe--eCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCC
Q 013717          333 MVVTGALRGHGKAILCLIN--VAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGH  385 (437)
Q Consensus       333 ~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h  385 (437)
                      ...   ..++  .+.++++  ++.+|++++.|+.|++||.++.+   .+.++...
T Consensus       286 ~~~---~~~~--~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~---~i~~i~~p  332 (346)
T d1jmxb_         286 KAA---NLDH--TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE---KVKNIKLP  332 (346)
T ss_dssp             EEE---ECSS--CCCEEEECSSSSCEEEESBSSEEEEEETTTTE---EEEEEECS
T ss_pred             EEE---cCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEECccCC---EEEEEECC
Confidence            322   1233  3555555  55699999999999999999877   55555533

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=1.1e-14  Score=127.58  Aligned_cols=270  Identities=10%  Similarity=0.120  Sum_probs=174.3

Q ss_pred             ccccCCCceeEEecCCCcc--eeeeecCccCCeEEEEee--CCEEEEEe-cC-eEEEEeCCCCceeeeeccccCCCCccc
Q 013717           71 LQKLSPDETINFSSASHLC--INSVQLGHKLPIGCIAVH--HNFLYAAS-SH-EINVYDRTGTTWTSINTFNDNDSSSGS  144 (437)
Q Consensus        71 ~~s~s~dg~i~~~~~~~~~--~~~~~~~h~~~V~~l~~~--~~~l~s~~-~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~  144 (437)
                      +++.+.|++|++|+++...  ..++.+.|.+.|..|+|+  |++|++++ .+ .|++|++...........  ...+...
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~--~~~~~~~   84 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA--ESALPGS   84 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE--EEECSSC
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEee--ecccCCC
Confidence            4566789999999986543  444555889999999999  88886655 46 999999976432221111  1234566


Q ss_pred             EEEEEEeCCe--EEEEe-cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717          145 VKSVTFCDGK--IFTAH-QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN  221 (437)
Q Consensus       145 v~~l~~~~~~--l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  221 (437)
                      +..++|++++  |++++ .++.|.+|+............                            ..+...+.++.++
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~v~~s  136 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV----------------------------VEGLDGCHSANIS  136 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE----------------------------ECCCTTBCCCEEC
T ss_pred             ceEEEEcCCCCEEeecccCCCceeeeccccccceecccc----------------------------cCCCccceEEEee
Confidence            7789999775  66665 577899998876543322211                            2355667788888


Q ss_pred             C--CeEEEEE-CCCcEEEEECCCcceEEEee------cccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceee
Q 013717          222 N--GLIYSVS-WDKSLKIWRASDLRCLESIK------AHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALI  290 (437)
Q Consensus       222 ~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~  290 (437)
                      +  ++++.++ .+..|.+|+...........      ........++|++++.  +.+....+...+|+...........
T Consensus       137 ~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  216 (333)
T d1ri6a_         137 PDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV  216 (333)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE
T ss_pred             ecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeee
Confidence            7  6666665 45679999987654332211      2345568899999988  4455567788888765444333333


Q ss_pred             EEee------CccccEEEEEEccCCCEEEEE-eCCCcEEEEECCCCccceEEeeeecccccceE--EEEeeCCEEEEEe-
Q 013717          291 ATLE------KHKSAVNALALSDDGTVLFSG-ACDRSILVWDREDSANHMVVTGALRGHGKAIL--CLINVAGLLMSGS-  360 (437)
Q Consensus       291 ~~~~------~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~l~~~~-  360 (437)
                      ....      ........+++++++++++.. ..++.+.+|++............. .....+.  ++++++++|++++ 
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~a~spDGk~l~va~~  295 (333)
T d1ri6a_         217 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ-PTETQPRGFNVDHSGKYLIAAGQ  295 (333)
T ss_dssp             EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE-ECSSSCCCEEECTTSSEEEEECT
T ss_pred             eeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEe-CCCCCeeEEEEeCCCCEEEEEEC
Confidence            2222      123456788999999876654 557889999987665544443322 2233343  4445566766654 


Q ss_pred             CCCcEEEeeCC
Q 013717          361 ADRTVRIWQRG  371 (437)
Q Consensus       361 ~dg~i~iwd~~  371 (437)
                      .++.|++|++.
T Consensus       296 ~~~~v~v~~id  306 (333)
T d1ri6a_         296 KSHHISVYEIV  306 (333)
T ss_dssp             TTCEEEEEEEE
T ss_pred             CCCeEEEEEEE
Confidence            56899999664

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=1e-15  Score=135.60  Aligned_cols=273  Identities=10%  Similarity=0.001  Sum_probs=164.0

Q ss_pred             CCEEEEEe-----cC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEE----------ecCCeEEEEeC
Q 013717          108 HNFLYAAS-----SH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTA----------HQDCKIRVWQL  169 (437)
Q Consensus       108 ~~~l~s~~-----~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~----------~~dg~i~iwd~  169 (437)
                      ++.++...     .. .|.+||..+++  .+.++     +.+.+..++|+|++  |+.+          ..|+.|++||.
T Consensus        13 g~~~~v~~~~~~~~~~~v~v~D~~tg~--~~~~~-----~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~   85 (355)
T d2bbkh_          13 ARRVYVNDPAHFAAVTQQFVIDGEAGR--VIGMI-----DGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP   85 (355)
T ss_dssp             TTEEEEEECGGGCSSEEEEEEETTTTE--EEEEE-----EECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             CCEEEEEecccCCCcCeEEEEECCCCc--EEEEE-----ECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence            66666543     34 79999999964  44444     22334478999876  5543          45789999999


Q ss_pred             CCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE--CCCcEEEEECCCcceE
Q 013717          170 TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS--WDKSLKIWRASDLRCL  245 (437)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~--~dg~i~iwd~~~~~~~  245 (437)
                      .+++....+.......                       .........++|++  ++++.+.  .+..+.+||..+++.+
T Consensus        86 ~t~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~  142 (355)
T d2bbkh_          86 VTLLPTADIELPDAPR-----------------------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK  142 (355)
T ss_dssp             TTCCEEEEEEETTCCC-----------------------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred             CCCCEEEEEecCCcce-----------------------eecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEe
Confidence            9887554433211000                       00112234567777  5565554  5678999999999988


Q ss_pred             EEeecccc-------cEEEEEEecCCe-EE-EEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe
Q 013717          246 ESIKAHED-------AVNAVAVSAGGT-VY-TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA  316 (437)
Q Consensus       246 ~~~~~~~~-------~v~~~~~~~~~~-l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  316 (437)
                      ..+.....       ....+.+++++. ++ ....++.+.+++.....         ..+...+....+.+++..++.++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  213 (355)
T d2bbkh_         143 RMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH---------PEDEFLINHPAYSQKAGRLVWPT  213 (355)
T ss_dssp             EEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS---------CTTSCBCSCCEEETTTTEEEEEB
T ss_pred             eEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc---------ceecceeeeccccCCCCeEEEec
Confidence            87764322       122233444443 11 12222333333221111         12333455567788888999999


Q ss_pred             CCCcEEEEECCCCccceEEeee----------ecccccceEEEEeeCCEEEEEeCC----------CcEEEeeCCCCCCe
Q 013717          317 CDRSILVWDREDSANHMVVTGA----------LRGHGKAILCLINVAGLLMSGSAD----------RTVRIWQRGSDGRF  376 (437)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~~~----------~~~~~~~i~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~  376 (437)
                      .++.+++|++..++........          +.........+..++..++....+          ..|.+||..+++  
T Consensus       214 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~--  291 (355)
T d2bbkh_         214 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE--  291 (355)
T ss_dssp             TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--
T ss_pred             CCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCc--
Confidence            9999999999876432211110          001122234555556655544333          369999999877  


Q ss_pred             eeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCC
Q 013717          377 GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPN  426 (437)
Q Consensus       377 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  426 (437)
                       .+..+. +...+.+++|+|++..   .++++++.|+.|++||+++++..
T Consensus       292 -~~~~~~-~~~~~~~~a~spDG~~---~l~v~~~~d~~i~v~D~~tg~~~  336 (355)
T d2bbkh_         292 -RLAKFE-MGHEIDSINVSQDEKP---LLYALSTGDKTLYIHDAESGEEL  336 (355)
T ss_dssp             -EEEEEE-EEEEECEEEECCSSSC---EEEEEETTTTEEEEEETTTCCEE
T ss_pred             -EEEEec-CCCCEEEEEEcCCCCe---EEEEEECCCCEEEEEECCCCCEE
Confidence             455554 3456899999999854   35678888999999999998753

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.67  E-value=8e-13  Score=117.49  Aligned_cols=284  Identities=9%  Similarity=-0.030  Sum_probs=175.6

Q ss_pred             eeeccccccccc-----cCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEe----------cC-eEEEE
Q 013717           62 LQTLPSVPSLQK-----LSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAAS----------SH-EINVY  122 (437)
Q Consensus        62 ~~~~~~~~~~~s-----~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~----------~d-~v~vw  122 (437)
                      ..+.|....+..     .+..+.+.+||..... .+..+ ++..+  .++|+  |++|++++          .+ .|.+|
T Consensus        26 ~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~-~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~  102 (373)
T d2madh_          26 EAPGADGRRSYINLPAHHSAIIQQWVLDAGSGS-ILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF  102 (373)
T ss_pred             cccCCCCCEEEEEcccccCCCceEEEEECCCCC-EEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEE
Confidence            344555554432     2345678888876654 44455 55544  67888  88888875          34 79999


Q ss_pred             eCCCCceeeeeccccCCCCcccEE-------EEEEeCCe--EE--EEecCCeEEEEeCCCCcccccccccCccccceeee
Q 013717          123 DRTGTTWTSINTFNDNDSSSGSVK-------SVTFCDGK--IF--TAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRF  191 (437)
Q Consensus       123 d~~~~~~~~~~~~~~~~~h~~~v~-------~l~~~~~~--l~--s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  191 (437)
                      |..+++.  ...+   ..+.....       .+.|+++.  ++  ....++.+.+|+....+..                
T Consensus       103 D~~t~~~--~~~~---~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~----------------  161 (373)
T d2madh_         103 DPVTFLP--IADI---ELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD----------------  161 (373)
T ss_pred             ECCCCcE--EEEE---ecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE----------------
Confidence            9999644  3333   12333333       34454332  22  2233455666665544321                


Q ss_pred             cCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecc------cccEEEEEEec
Q 013717          192 MLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAH------EDAVNAVAVSA  262 (437)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~  262 (437)
                                        .+.....++.+++   ..+++.+.|+.+.+||...++.......+      ......+.+.+
T Consensus       162 ------------------~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (373)
T d2madh_         162 ------------------QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK  223 (373)
T ss_pred             ------------------EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC
Confidence                              2333455666666   56678899999999999988776655422      22234455666


Q ss_pred             CCeEEEEeCCCeEEEecCCCCcccceeeEEeeC----------ccccEEEEEEccCCCEE----------EEEeCCCcEE
Q 013717          263 GGTVYTGSADRKIRVWAKPFNEKRHALIATLEK----------HKSAVNALALSDDGTVL----------FSGACDRSIL  322 (437)
Q Consensus       263 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l----------~~~~~dg~i~  322 (437)
                      ++.++..+.++.+.+|+...+...  .......          .......+++++++..+          +....++.+.
T Consensus       224 ~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~  301 (373)
T d2madh_         224 SGRIVWPVYSGKILQADISAAGAT--NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT  301 (373)
T ss_pred             CceEEEecCCceEEEEEcCCCeEE--EEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEE
Confidence            666778888999999987654311  1111111          11223445666665544          4455677899


Q ss_pred             EEECCCCccceEEeeeecccccceEEEEee--CC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc
Q 013717          323 VWDREDSANHMVVTGALRGHGKAILCLINV--AG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE  397 (437)
Q Consensus       323 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~  397 (437)
                      +||..+++....+     .+...+..+.++  ++  ++++++.|+.|++||+.+++   .+..+..+....+.|++.++
T Consensus       302 ~~d~~t~~~~~~~-----~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~---~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         302 SVTGLVGQTSSQI-----SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD---QDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             EEECCCCcEEEEe-----cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC---EEEEECCCCCCCcEEEEecC
Confidence            9999887643322     234455666665  44  45788999999999999988   78888888888888877653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.61  E-value=9.6e-14  Score=122.59  Aligned_cols=278  Identities=14%  Similarity=0.044  Sum_probs=165.4

Q ss_pred             CCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEe----------cC-eEEEEeCCCCceeeeeccccC--
Q 013717           75 SPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAAS----------SH-EINVYDRTGTTWTSINTFNDN--  138 (437)
Q Consensus        75 s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~----------~d-~v~vwd~~~~~~~~~~~~~~~--  138 (437)
                      ..+..+.+||..... .+..+ .+..+  .++|+  |++|++++          .+ .|++||..+++..........  
T Consensus        25 ~~~~~v~v~D~~tg~-~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~  101 (355)
T d2bbkh_          25 AAVTQQFVIDGEAGR-VIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR  101 (355)
T ss_dssp             CSSEEEEEEETTTTE-EEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC
T ss_pred             CCcCeEEEEECCCCc-EEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcce
Confidence            456789999987654 44444 44433  68888  88777653          35 899999999644333222110  


Q ss_pred             CCCcccEEEEEEeCCe--EEEE--ecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCc
Q 013717          139 DSSSGSVKSVTFCDGK--IFTA--HQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA  214 (437)
Q Consensus       139 ~~h~~~v~~l~~~~~~--l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (437)
                      .........++|+++.  ++.+  +.+..+.+|+..+++....+..                               ...
T Consensus       102 ~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~  150 (355)
T d2bbkh_         102 FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV-------------------------------PDC  150 (355)
T ss_dssp             CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-------------------------------CSE
T ss_pred             eecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEec-------------------------------CCc
Confidence            1122334567888765  4444  4567899999988765443321                               111


Q ss_pred             EEEEEeCCCeEEEEECCCcEEEEECCCcceEEEee------cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc
Q 013717          215 VTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIK------AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH  287 (437)
Q Consensus       215 v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~  287 (437)
                      .......+...+..+.||...++..........+.      .+...+....+.+++. ++.++.++.+.+|++..+... 
T Consensus       151 ~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-  229 (355)
T d2bbkh_         151 YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAK-  229 (355)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCE-
T ss_pred             ceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEE-
Confidence            11112222444455566666555544433222221      2233345556666665 889999999999998755421 


Q ss_pred             eeeEEeeCc----------cccEEEEEEccCCCEEEEEeCC----------CcEEEEECCCCccceEEeeeecccccceE
Q 013717          288 ALIATLEKH----------KSAVNALALSDDGTVLFSGACD----------RSILVWDREDSANHMVVTGALRGHGKAIL  347 (437)
Q Consensus       288 ~~~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~  347 (437)
                       .+.....+          ......+++++++..++....+          ..|.+||..+++....+.     +...+.
T Consensus       230 -~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-----~~~~~~  303 (355)
T d2bbkh_         230 -FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-----MGHEID  303 (355)
T ss_dssp             -ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-----EEEEEC
T ss_pred             -EEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-----CCCCEE
Confidence             11111111          1223458899999988776544          469999999876433322     223345


Q ss_pred             EEEee--CC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717          348 CLINV--AG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT  396 (437)
Q Consensus       348 ~~~~~--~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~  396 (437)
                      ++.++  ++  ++++++.|+.|++||+++++   .+.++.++...-..+.+.+
T Consensus       304 ~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~---~~~~i~~~G~~p~~i~~~d  353 (355)
T d2bbkh_         304 SINVSQDEKPLLYALSTGDKTLYIHDAESGE---ELRSVNQLGHGPQVITTAD  353 (355)
T ss_dssp             EEEECCSSSCEEEEEETTTTEEEEEETTTCC---EEEEECCCCSSCCEEECCC
T ss_pred             EEEEcCCCCeEEEEEECCCCEEEEEECCCCC---EEEEEeCcCCCccEEEeCC
Confidence            55555  44  45677789999999999987   7778877655555554433

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.40  E-value=4.2e-12  Score=112.62  Aligned_cols=268  Identities=9%  Similarity=-0.027  Sum_probs=158.7

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEE----------ecCCeEEEEeCCCCcccccccccCccc
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTA----------HQDCKIRVWQLTPTKHHKLKTTLPTVN  185 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~  185 (437)
                      .|.+||..+++.  +..+   ..+..  ..++|++++  ++.+          ..|+.|.+||..+++....+.......
T Consensus        47 ~~~~~d~~~~~~--~~~~---~~~~~--~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~  119 (368)
T d1mdah_          47 ENWVSCAGCGVT--LGHS---LGAFL--SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR  119 (368)
T ss_dssp             EEEEEETTTTEE--EEEE---EECTT--CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS
T ss_pred             eEEEEeCCCCcE--EEEE---eCCCC--CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccce
Confidence            677889888643  3333   12322  257889775  5544          347889999999887554432110000


Q ss_pred             cceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE-CCCcEEEEECCCcceEEEeecccccEEEEEEec
Q 013717          186 DRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS-WDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA  262 (437)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  262 (437)
                                             .........++|++  ++++++. .++.+.+||+.+++.+..+..+....  +....
T Consensus       120 -----------------------~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~~  174 (368)
T d1mdah_         120 -----------------------FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH--IHPGA  174 (368)
T ss_dssp             -----------------------CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC--CEEEE
T ss_pred             -----------------------ecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce--EccCC
Confidence                                   00111223577877  6676665 57999999999999888876443322  11112


Q ss_pred             CCeEEEEeCCCeEEEecCCCCcccceee--EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeee--
Q 013717          263 GGTVYTGSADRKIRVWAKPFNEKRHALI--ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGA--  338 (437)
Q Consensus       263 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--  338 (437)
                      ...++..+.||.+.++++..........  ..+..+...+..+.+.+++..+...  ++.++++++............  
T Consensus       175 ~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~  252 (368)
T d1mdah_         175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGN  252 (368)
T ss_dssp             TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSS
T ss_pred             CceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccc
Confidence            2236677788888888765443221111  1122234445567778887666543  466777777654332211110  


Q ss_pred             --------ecccccceEEEEeeCCEEEEEeCC---------CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCC
Q 013717          339 --------LRGHGKAILCLINVAGLLMSGSAD---------RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQN  401 (437)
Q Consensus       339 --------~~~~~~~i~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  401 (437)
                              ..........+..++..++....+         ..|.+||..+++   .+..+. +...+.+++|+|++.. 
T Consensus       253 ~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~---~~~~~~-~~~~~~~~a~spDG~~-  327 (368)
T d1mdah_         253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ---TSGPIS-NGHDSDAIIAAQDGAS-  327 (368)
T ss_dssp             CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC---EEECCE-EEEEECEEEECCSSSC-
T ss_pred             cceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc---EeEEec-CCCceeEEEECCCCCE-
Confidence                    111122345566666644443222         258999999877   455544 3457899999999854 


Q ss_pred             ceEEEEEecCCCcEEEEeeccCCCC
Q 013717          402 GVVSVFSGSLDGEIRAWQVSVSCPN  426 (437)
Q Consensus       402 ~~~~l~s~~~dg~i~iw~~~~~~~~  426 (437)
                        .+++++..|+.|++||..+++..
T Consensus       328 --~ly~s~~~~~~v~v~D~~tgk~~  350 (368)
T d1mdah_         328 --DNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             --EEEEEETTTTEEEEEESSSCEEE
T ss_pred             --EEEEEeCCCCeEEEEECCCCCEE
Confidence              35678888999999999988753

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.29  E-value=4.3e-11  Score=105.73  Aligned_cols=261  Identities=11%  Similarity=0.080  Sum_probs=152.8

Q ss_pred             EEEEecC-eEEEEeCCCCceeeeeccccC---------------------------CCCcccEEEEEEeCCe---EEEEe
Q 013717          111 LYAASSH-EINVYDRTGTTWTSINTFNDN---------------------------DSSSGSVKSVTFCDGK---IFTAH  159 (437)
Q Consensus       111 l~s~~~d-~v~vwd~~~~~~~~~~~~~~~---------------------------~~h~~~v~~l~~~~~~---l~s~~  159 (437)
                      +++++.+ .|+||++.++  +.+..+..+                           ..|..........+|+   +++..
T Consensus        14 f~Sgg~sG~V~V~dlpS~--r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~   91 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSM--RELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK   91 (441)
T ss_dssp             EEECBTTCCEEEEEETTT--EEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET
T ss_pred             EEeCCCCCcEEEEeCCCC--cEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC
Confidence            4455566 8888888874  333333221                           1122333444344444   45666


Q ss_pred             cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEEEECCC---
Q 013717          160 QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYSVSWDK---  232 (437)
Q Consensus       160 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg---  232 (437)
                      .+++|.++|+++.+....+. +                            .+...+..+++++    .+++..+.+.   
T Consensus        92 ~~~rVavIDl~t~k~~~ii~-i----------------------------P~g~gphgi~~spdg~t~YV~~~~~~~v~~  142 (441)
T d1qnia2          92 ANTRVARIRLDIMKTDKITH-I----------------------------PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQ  142 (441)
T ss_dssp             TTTEEEEEETTTTEEEEEEE-C----------------------------TTCCCEEEEEECCSSBCCEEEEEECSCEES
T ss_pred             CCCEEEEEECCCCcEeeEEe-c----------------------------CCCCCccceEEeccCCEEEEEeccCCcccc
Confidence            88999999999987555432 1                            2456677888875    2444444332   


Q ss_pred             --------------cEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCC-------------------------
Q 013717          233 --------------SLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSAD-------------------------  272 (437)
Q Consensus       233 --------------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d-------------------------  272 (437)
                                    .+..+|..+.+....+.. .+....++++|+|+ +++.+.+                         
T Consensus       143 ~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~  221 (441)
T d1qnia2         143 PNDGTDFSLDNSYTMFTAIDAETMDVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVER  221 (441)
T ss_dssp             SCSSSCCCGGGEEEEEEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHH
T ss_pred             cCcccccccccccceEEeecCccceeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccc
Confidence                          235688888888777763 34578899999998 5555433                         


Q ss_pred             ----------------CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEE-EEeCCCcEEEEECCCCccc---
Q 013717          273 ----------------RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLF-SGACDRSILVWDREDSANH---  332 (437)
Q Consensus       273 ----------------g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~---  332 (437)
                                      +.+.+++..    ....+..+... .....+.++|||++++ ++..+++|.|||+++....   
T Consensus       222 ~~~~~~dGk~~~v~~~~v~vvd~~~----~~~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~  296 (441)
T d1qnia2         222 IAAAVKAGNFKTIGDSKVPVVDGRG----ESEFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFED  296 (441)
T ss_dssp             HHHHHHTTCCBCCTTCCCCEEECSS----SCSSEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTT
T ss_pred             eEEEecCCCEEEeCCCCcEEEEccc----CCceEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhc
Confidence                            222222211    11233344333 3457899999999875 4677999999998642210   


Q ss_pred             -----eEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCC-------CCCeeeeeee-----cCCCCCeeEEE
Q 013717          333 -----MVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGS-------DGRFGCLAVL-----EGHTKPVKSLT  393 (437)
Q Consensus       333 -----~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~-----~~h~~~v~~l~  393 (437)
                           ..+.... ...-....-.|+++  .+.+...|.+|..|++..       .+....+..+     .+|...+.+.+
T Consensus       297 ~~~~~~~~~~~~-~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t  375 (441)
T d1qnia2         297 KIELRDTIVAEP-ELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTES  375 (441)
T ss_dssp             SSCGGGGEEECC-BCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTS
T ss_pred             cCCcceEEEeec-ccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccc
Confidence                 0011110 01111233455554  677778899999999742       1111233333     46777777777


Q ss_pred             EEccCCCCceEEEEEe---cCCCc
Q 013717          394 AVTEEGQNGVVSVFSG---SLDGE  414 (437)
Q Consensus       394 ~~~~~~~~~~~~l~s~---~~dg~  414 (437)
                      ++|++     +||+++   +.|..
T Consensus       376 ~~pdG-----k~l~s~~k~s~dr~  394 (441)
T d1qnia2         376 RDADG-----KWLVVLSKFSKDRF  394 (441)
T ss_dssp             TTCCC-----CEEEEEESCCGGGS
T ss_pred             cCCCC-----cEEEecCccccccC
Confidence            88887     589999   55543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.29  E-value=2.3e-10  Score=104.79  Aligned_cols=137  Identities=12%  Similarity=0.125  Sum_probs=95.4

Q ss_pred             EEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEe---------cCCeEEEEeC
Q 013717          103 CIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAH---------QDCKIRVWQL  169 (437)
Q Consensus       103 ~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~---------~dg~i~iwd~  169 (437)
                      .+.|.  ++++. -.++.+.+||+.+++...+..-..+..|...|.++.|+||+  |+.++         .++.+.+||+
T Consensus        21 ~~~W~~d~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~   99 (470)
T d2bgra1          21 SLRWISDHEYLY-KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL   99 (470)
T ss_dssp             CCEECSSSEEEE-ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CCEeCCCCEEEE-EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEEC
Confidence            34555  44444 33338999999998665554444456788899999999887  66653         3577899999


Q ss_pred             CCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEE
Q 013717          170 TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLES  247 (437)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~  247 (437)
                      .+++.....                               .+...+....|+|  +.++.. .++.+.+|+..+++..+.
T Consensus       100 ~~~~~~~l~-------------------------------~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~  147 (470)
T d2bgra1         100 NKRQLITEE-------------------------------RIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRI  147 (470)
T ss_dssp             TTTEECCSS-------------------------------CCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEEC
T ss_pred             CCCcccccc-------------------------------cCCccccccccccCcceeeEe-ecccceEEECCCCceeee
Confidence            988643322                               3777899999999  666664 577899999998876654


Q ss_pred             eecc------------------cccEEEEEEecCCe-EEEEeCC
Q 013717          248 IKAH------------------EDAVNAVAVSAGGT-VYTGSAD  272 (437)
Q Consensus       248 ~~~~------------------~~~v~~~~~~~~~~-l~~~~~d  272 (437)
                      ....                  .+....+.|+|||+ |+....|
T Consensus       148 t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             eeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence            3211                  12345678999998 7776543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.18  E-value=1.1e-09  Score=96.55  Aligned_cols=265  Identities=12%  Similarity=0.020  Sum_probs=148.7

Q ss_pred             CceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEe----------cC-eEEEEeCCCCceeeeeccccC--CCC
Q 013717           77 DETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAAS----------SH-EINVYDRTGTTWTSINTFNDN--DSS  141 (437)
Q Consensus        77 dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~----------~d-~v~vwd~~~~~~~~~~~~~~~--~~h  141 (437)
                      +..+.+++...........++..+  .++|+  |++|+..+          .+ .|.+||..+++......+...  ...
T Consensus        45 ~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~  122 (368)
T d1mdah_          45 TTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV  122 (368)
T ss_dssp             SEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred             cceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecc
Confidence            344666676654443333344444  36677  88888765          35 799999998643332222100  011


Q ss_pred             cccEEEEEEeCCe--EEEE-ecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717          142 SGSVKSVTFCDGK--IFTA-HQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL  218 (437)
Q Consensus       142 ~~~v~~l~~~~~~--l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  218 (437)
                      ......++|++++  ++.+ ..++.+.+||+.+++....+..                              +.... ..
T Consensus       123 g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~------------------------------~~~~~-~~  171 (368)
T d1mdah_         123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKS------------------------------ASCFH-IH  171 (368)
T ss_dssp             SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEEC------------------------------SSCCC-CE
T ss_pred             cCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeec------------------------------cCcce-Ec
Confidence            2233468999776  5555 4679999999998865443321                              11110 01


Q ss_pred             EeCCCeEEEEECCCcEEEEECCCcceEEEe------ecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEE
Q 013717          219 AVNNGLIYSVSWDKSLKIWRASDLRCLESI------KAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIAT  292 (437)
Q Consensus       219 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  292 (437)
                      ...+..++..+.||.+.++++.........      ..+...+....+.+++.++. ..++.+.++++..+...  ....
T Consensus       172 ~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~v~~~~~~~~~~~--~~~~  248 (368)
T d1mdah_         172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW-AVASSILQGDIPAAGAT--MKAA  248 (368)
T ss_dssp             EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE-CBSSCCEEEECCSSCCE--EECC
T ss_pred             cCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEE-ecCCCEEEEeecCCceE--EEee
Confidence            112266677788999999987655432222      12334445566666766322 23455666655433211  1111


Q ss_pred             eeC----------ccccEEEEEEccCCCEEEEEeCC---------CcEEEEECCCCccceEEeeeecccccceEEEEe--
Q 013717          293 LEK----------HKSAVNALALSDDGTVLFSGACD---------RSILVWDREDSANHMVVTGALRGHGKAILCLIN--  351 (437)
Q Consensus       293 ~~~----------~~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~--  351 (437)
                      ...          .......+++++++..++....+         ..|.+||..+++....+    . +...+..+.+  
T Consensus       249 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~----~-~~~~~~~~a~sp  323 (368)
T d1mdah_         249 IDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI----S-NGHDSDAIIAAQ  323 (368)
T ss_dssp             CCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC----E-EEEEECEEEECC
T ss_pred             cccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEe----c-CCCceeEEEECC
Confidence            110          01122357888988877665432         35899999887633222    1 2234444555  


Q ss_pred             eCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCC
Q 013717          352 VAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGH  385 (437)
Q Consensus       352 ~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h  385 (437)
                      +++  +++++..|+.|++||..+++   .+..+...
T Consensus       324 DG~~~ly~s~~~~~~v~v~D~~tgk---~~~~i~~g  356 (368)
T d1mdah_         324 DGASDNYANSAGTEVLDIYDAASDQ---DQSSVELD  356 (368)
T ss_dssp             SSSCEEEEEETTTTEEEEEESSSCE---EEEECCCC
T ss_pred             CCCEEEEEEeCCCCeEEEEECCCCC---EEEEEECC
Confidence            454  45677789999999999877   66666543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.13  E-value=5.4e-10  Score=98.58  Aligned_cols=253  Identities=8%  Similarity=-0.036  Sum_probs=140.2

Q ss_pred             EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEE-ECC
Q 013717          155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSV-SWD  231 (437)
Q Consensus       155 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~-~~d  231 (437)
                      +++++.+|.|++|++.+++.++.+..+.........+......+.........-..|..........+  +++++. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            78999999999999999887766543322111100000000000000000000112444444443333  666555 578


Q ss_pred             CcEEEEECCCcceEEEee-cccccEEEEEEecCCe--EEEEeCCCeE------------------EEecCCCCcccceee
Q 013717          232 KSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGGT--VYTGSADRKI------------------RVWAKPFNEKRHALI  290 (437)
Q Consensus       232 g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~--l~~~~~dg~v------------------~iwd~~~~~~~~~~~  290 (437)
                      +.|.++|+++++....+. .+......++|+|+++  .+++..+..+                  ..+|..+.    +..
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~----~v~  169 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM----DVA  169 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTC----SEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccc----eee
Confidence            899999999999888765 3567899999999998  4544444433                  23443322    222


Q ss_pred             EEeeCccccEEEEEEccCCCEEEEEeCCC-----------------------------------------cEEEEECCCC
Q 013717          291 ATLEKHKSAVNALALSDDGTVLFSGACDR-----------------------------------------SILVWDREDS  329 (437)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----------------------------------------~i~i~d~~~~  329 (437)
                      .++. ....+..++|+|+|+++++++.+.                                         .+.+++....
T Consensus       170 ~qI~-v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~  248 (441)
T d1qnia2         170 WQVI-VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGES  248 (441)
T ss_dssp             EEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSC
T ss_pred             EEEe-cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCC
Confidence            2222 234567899999999998876542                                         2233322222


Q ss_pred             ccceEEeeeecccc-cceEEEEeeCCE-EEEEeCCCcEEEeeCCCCCC-----eeeeeeecCC---CCCeeEEEEEccCC
Q 013717          330 ANHMVVTGALRGHG-KAILCLINVAGL-LMSGSADRTVRIWQRGSDGR-----FGCLAVLEGH---TKPVKSLTAVTEEG  399 (437)
Q Consensus       330 ~~~~~~~~~~~~~~-~~i~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~h---~~~v~~l~~~~~~~  399 (437)
                      +...    .+.... ..-..+++++++ ++++..+++|.|||+.....     ......+.++   .-.....+|.+++ 
T Consensus       249 ~v~~----~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g-  323 (441)
T d1qnia2         249 EFTR----YIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRG-  323 (441)
T ss_dssp             SSEE----EECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSS-
T ss_pred             ceEE----EEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCc-
Confidence            1111    111111 111455666775 45677899999999865220     0001111111   1123445677766 


Q ss_pred             CCceEEEEEecCCCcEEEEeec
Q 013717          400 QNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       400 ~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                          ..+.+...|..|..|++.
T Consensus       324 ----~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         324 ----NAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             ----EEEEEETTTTEEEEEEHH
T ss_pred             ----eEEEcccccceEEEeccc
Confidence                468888899999999986

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.10  E-value=1e-06  Score=76.85  Aligned_cols=168  Identities=10%  Similarity=0.108  Sum_probs=99.7

Q ss_pred             cccEEEEEEecCCe-EEEEe-CCCeEEEecCCCCcccceeeEEee--CccccEEEEEEccCCCEEEEEe-CCCcEEEEEC
Q 013717          252 EDAVNAVAVSAGGT-VYTGS-ADRKIRVWAKPFNEKRHALIATLE--KHKSAVNALALSDDGTVLFSGA-CDRSILVWDR  326 (437)
Q Consensus       252 ~~~v~~~~~~~~~~-l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~  326 (437)
                      ...+.++.|+|+|+ ++++. ....|.+|+....... .......  ........++|+|+++++++.. .+++|.+|++
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~-~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~  222 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV-ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE-EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCce-eeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEe
Confidence            34578999999999 55554 3568888876533221 1222222  2356789999999999886555 5889999999


Q ss_pred             CCCccceEEee-eec--------------ccccce--EEEEeeCCEEEEEeC-C-----CcEEEeeCCCCCCeee---ee
Q 013717          327 EDSANHMVVTG-ALR--------------GHGKAI--LCLINVAGLLMSGSA-D-----RTVRIWQRGSDGRFGC---LA  380 (437)
Q Consensus       327 ~~~~~~~~~~~-~~~--------------~~~~~i--~~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~---~~  380 (437)
                      ...+....... ...              .+....  ..+++++++|+++.. +     +.|..|++........   +.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~  302 (365)
T d1jofa_         223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS  302 (365)
T ss_dssp             CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred             cCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEee
Confidence            76543322111 110              111122  344555667766532 2     2377787765442221   11


Q ss_pred             eecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          381 VLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       381 ~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      ..........+++++|.+++   .++++...++.|.+|+++..
T Consensus       303 ~~~~~G~~p~~i~~~p~~G~---~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         303 PTPTSGGHSNAVSPCPWSDE---WMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ECSSCCTTCCCEEECTTCTT---EEEEECSSSCEEEEEEEETT
T ss_pred             EEEcCCCCccEEEecCCCCC---EEEEEeCCCCeEEEEEEeCC
Confidence            11223345678999984322   35566678899999998754

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.96  E-value=2.7e-06  Score=71.12  Aligned_cols=235  Identities=11%  Similarity=0.138  Sum_probs=141.0

Q ss_pred             CeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC--e-EE-EEecCCeEEEEeCCCC
Q 013717          100 PIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG--K-IF-TAHQDCKIRVWQLTPT  172 (437)
Q Consensus       100 ~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~-l~-s~~~dg~i~iwd~~~~  172 (437)
                      .-..|+++  ++.+++-..+ .|++||.+..-...........+.......+++.++  . ++ ..+.++.|..++....
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~  103 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQ  103 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSC
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccccc
Confidence            35788887  7776666666 999999875322222222111223334556666533  2 33 3345567777765432


Q ss_pred             cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee-
Q 013717          173 KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK-  249 (437)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-  249 (437)
                       ......                             .........+++.+  .++++....+.+.+++. +++.+..+. 
T Consensus       104 -~~~~~~-----------------------------~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~  152 (279)
T d1q7fa_         104 -FVRKFG-----------------------------ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGC  152 (279)
T ss_dssp             -EEEEEC-----------------------------TTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEEC
T ss_pred             -ceeecC-----------------------------CCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccc
Confidence             211111                             11334566788876  55555556677888875 456666653 


Q ss_pred             -cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEee--CccccEEEEEEccCCCEEEEEeC-CCcEEEE
Q 013717          250 -AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLE--KHKSAVNALALSDDGTVLFSGAC-DRSILVW  324 (437)
Q Consensus       250 -~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~  324 (437)
                       .+......+++.+++. +++....+.|.+||...     +.+..+.  +.......|++.++|+.+++-.. ++.|.+|
T Consensus       153 ~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G-----~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f  227 (279)
T d1q7fa_         153 SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIF  227 (279)
T ss_dssp             TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEE
T ss_pred             cccccccceeeeccceeEEeeeccccceeeeecCC-----ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEE
Confidence             3456788899999998 67777789999998653     2344442  34456889999999997776544 4569999


Q ss_pred             ECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCC
Q 013717          325 DREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSD  373 (437)
Q Consensus       325 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~  373 (437)
                      +.. ++....+...  ........++..++ .|+++..++.|++|.....
T Consensus       228 ~~~-G~~~~~~~~~--~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         228 TQD-GQLISALESK--VKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             CTT-SCEEEEEEES--SCCSCEEEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred             CCC-CCEEEEEeCC--CCCCCEeEEEEeCCCcEEEEeCCCeEEEEEeeee
Confidence            853 4422222221  12223455555544 5566678899999987753

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.96  E-value=2.2e-06  Score=71.71  Aligned_cols=240  Identities=12%  Similarity=0.126  Sum_probs=144.7

Q ss_pred             ccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe
Q 013717          143 GSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV  220 (437)
Q Consensus       143 ~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  220 (437)
                      .....|+++++.  +++-..++.|++||.+ ++....+.......                        +.......+++
T Consensus        23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~------------------------~~~~~p~~~~~   77 (279)
T d1q7fa_          23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRD------------------------SQLLYPNRVAV   77 (279)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSST------------------------TCBSSEEEEEE
T ss_pred             CCccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCc------------------------ccccccccccc
Confidence            357899998654  4454567889999976 33222221110000                        01112233443


Q ss_pred             CC---CeEEE-EECCCcEEEEECCCcceEEEee-cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEe-
Q 013717          221 NN---GLIYS-VSWDKSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATL-  293 (437)
Q Consensus       221 ~~---~~l~~-~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~-  293 (437)
                      ..   ..+++ .+.++.|..++. .++....+. ........+++.+++. +++....+.+.+++...     +.+..+ 
T Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-----~~~~~~g  151 (279)
T d1q7fa_          78 VRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-----NVLHKFG  151 (279)
T ss_dssp             ETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-----CEEEEEE
T ss_pred             cccccccceeccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-----ceeeccc
Confidence            22   23332 234556777775 455555553 3345678899999998 55556667788887542     233433 


Q ss_pred             -eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeC-CCcEEEee
Q 013717          294 -EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSA-DRTVRIWQ  369 (437)
Q Consensus       294 -~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-dg~i~iwd  369 (437)
                       ..+......+++.++|+.+++....+.|++||.... ....+  ...+.......++.+  ++++++-.. ++.|.+|+
T Consensus       152 ~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~-~~~~~--g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~  228 (279)
T d1q7fa_         152 CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-YLRQI--GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT  228 (279)
T ss_dssp             CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-EEEEE--SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred             ccccccccceeeeccceeEEeeeccccceeeeecCCc-eeeee--cccccccCCcccccccCCeEEEEECCCCcEEEEEC
Confidence             234567889999999998888888999999997542 22111  112333344555554  555555443 45799998


Q ss_pred             CCCCCCeeeeeeec--CCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCC
Q 013717          370 RGSDGRFGCLAVLE--GHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPN  426 (437)
Q Consensus       370 ~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  426 (437)
                      .. ++   .+..+.  ........|++.+++      .|+.++.+.+|++|+....+|.
T Consensus       229 ~~-G~---~~~~~~~~~~~~~p~~vav~~dG------~l~V~~~n~~v~~fr~~~~~~~  277 (279)
T d1q7fa_         229 QD-GQ---LISALESKVKHAQCFDVALMDDG------SVVLASKDYRLYIYRYVQLAPV  277 (279)
T ss_dssp             TT-SC---EEEEEEESSCCSCEEEEEEETTT------EEEEEETTTEEEEEECSCCCCT
T ss_pred             CC-CC---EEEEEeCCCCCCCEeEEEEeCCC------cEEEEeCCCeEEEEEeeeecCC
Confidence            54 43   444443  233457899999987      3555567899999999887664

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.92  E-value=7.9e-07  Score=75.74  Aligned_cols=196  Identities=10%  Similarity=0.124  Sum_probs=117.4

Q ss_pred             cEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeeccc----ccEEEEEEecCCeEEEEeCC---------------
Q 013717          214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHE----DAVNAVAVSAGGTVYTGSAD---------------  272 (437)
Q Consensus       214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~l~~~~~d---------------  272 (437)
                      .-..+.+.+  +.++++...+.|..+|..............    ...+.+++.++|.|..+...               
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~  151 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK  151 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccC
Confidence            356788887  678888877788889976543222111111    13578999999996554322               


Q ss_pred             -CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCC-----EEEEEeCCCcEEEEECCCCccceE--Eeeeecc-cc
Q 013717          273 -RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGT-----VLFSGACDRSILVWDREDSANHMV--VTGALRG-HG  343 (437)
Q Consensus       273 -g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~-~~  343 (437)
                       |.|..++..  .   +... +...-...+.++|+|++.     ++++-+..+.|..||+........  ....+.+ ..
T Consensus       152 ~G~v~~~~~d--g---~~~~-~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~  225 (314)
T d1pjxa_         152 FGSIYCFTTD--G---QMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE  225 (314)
T ss_dssp             CEEEEEECTT--S---CEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred             CceEEEEeec--C---ceeE-eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccc
Confidence             334444332  1   1111 112233457889998764     445556788899998764322211  1111111 11


Q ss_pred             cce--EEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          344 KAI--LCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       344 ~~i--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      ...  .++..++++.++....+.|.+||.+.+.   .+..+.......++++|.+++.    .++++.+.+|.|...++.
T Consensus       226 ~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~---~~~~i~~p~~~~t~~afg~d~~----~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ---PKMRIRCPFEKPSNLHFKPQTK----TIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS---CSEEEECSSSCEEEEEECTTSS----EEEEEETTTTEEEEEECS
T ss_pred             ccceeeEEecCCcEEEEEcCCCEEEEEeCCCCE---EEEEEECCCCCEEEEEEeCCCC----EEEEEECCCCcEEEEECC
Confidence            122  3344456677777778899999987655   4455555556789999988764    377888888877666654


Q ss_pred             c
Q 013717          422 V  422 (437)
Q Consensus       422 ~  422 (437)
                      .
T Consensus       299 ~  299 (314)
T d1pjxa_         299 R  299 (314)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.88  E-value=5e-07  Score=81.99  Aligned_cols=106  Identities=10%  Similarity=0.044  Sum_probs=75.4

Q ss_pred             eeccccccccccCCCceeEEecCCCcceeee----ec-CccCCeEEEEee--CCEEEEEec---------C-eEEEEeCC
Q 013717           63 QTLPSVPSLQKLSPDETINFSSASHLCINSV----QL-GHKLPIGCIAVH--HNFLYAASS---------H-EINVYDRT  125 (437)
Q Consensus        63 ~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~----~~-~h~~~V~~l~~~--~~~l~s~~~---------d-~v~vwd~~  125 (437)
                      ...+....+.  ..++.+.+|+.........    .+ .|...|.++.|+  |++|+.++.         + .+.+||++
T Consensus        23 ~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~  100 (470)
T d2bgra1          23 RWISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN  100 (470)
T ss_dssp             EECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             EeCCCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECC
Confidence            3444443332  3477899999976554332    23 566889999999  899998864         3 67899999


Q ss_pred             CCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCccccc
Q 013717          126 GTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKL  177 (437)
Q Consensus       126 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~  177 (437)
                      +++...   +   ..|...+..+.|+|++  ++. ..++.+.+|+..+++..+.
T Consensus       101 ~~~~~~---l---~~~~~~~~~~~~SPDG~~ia~-~~~~~l~~~~~~~g~~~~~  147 (470)
T d2bgra1         101 KRQLIT---E---ERIPNNTQWVTWSPVGHKLAY-VWNNDIYVKIEPNLPSYRI  147 (470)
T ss_dssp             TTEECC---S---SCCCTTEEEEEECSSTTCEEE-EETTEEEEESSTTSCCEEC
T ss_pred             CCcccc---c---ccCCccccccccccCcceeeE-eecccceEEECCCCceeee
Confidence            964332   2   4578899999999887  555 5678999999988765443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.84  E-value=7.7e-07  Score=75.52  Aligned_cols=200  Identities=13%  Similarity=0.044  Sum_probs=134.0

Q ss_pred             cEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceee
Q 013717          214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALI  290 (437)
Q Consensus       214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~  290 (437)
                      .+..+++.+  +++++...+++|..||... + ...+......+.++++.++|. +++...++.+..++..........+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            577899988  7777777789998888553 3 333445667899999999999 6777778888888765433222222


Q ss_pred             EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeee------ecccccceEEEEeeCC-EEEEEeCCC
Q 013717          291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGA------LRGHGKAILCLINVAG-LLMSGSADR  363 (437)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~-~l~~~~~dg  363 (437)
                      ... ........+++.++|+++++.+.++.+..+|...+.........      ..........+.++++ ++++.+..+
T Consensus       107 ~~~-~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~  185 (302)
T d2p4oa1         107 LTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKM  185 (302)
T ss_dssp             EEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTT
T ss_pred             ccc-CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCC
Confidence            222 24456889999999999998888999999998765432222111      0111233466777777 555666788


Q ss_pred             cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717          364 TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV  422 (437)
Q Consensus       364 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  422 (437)
                      .|+.++.............. +......+++.+++.     ++++...+++|..++.+.
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~-----l~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         186 LLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGN-----LYGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             EEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCC-----EEEECBTTCCEEEECTTC
T ss_pred             eEEecccccccccccccccc-CCCCCcceEECCCCC-----EEEEEcCCCcEEEECCCC
Confidence            89988887654322222222 234467899999884     677777788888887654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.82  E-value=3.2e-06  Score=73.65  Aligned_cols=282  Identities=10%  Similarity=0.069  Sum_probs=143.9

Q ss_pred             CCCceeEEecCCCcce---eeee--cCccCCeEEEEee--CCEEEEEecCeEEEEeCCCC-ceeeeeccccCCCCcccEE
Q 013717           75 SPDETINFSSASHLCI---NSVQ--LGHKLPIGCIAVH--HNFLYAASSHEINVYDRTGT-TWTSINTFNDNDSSSGSVK  146 (437)
Q Consensus        75 s~dg~i~~~~~~~~~~---~~~~--~~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~-~~~~~~~~~~~~~h~~~v~  146 (437)
                      +.++.|.....+....   .+..  ......+.-|+|+  +++|+++..+.+..|.+... ........    .......
T Consensus        11 t~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~p~   86 (365)
T d1jofa_          11 TPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASH----PIGGHPR   86 (365)
T ss_dssp             SSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEE----ECCSSGG
T ss_pred             cCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeee----cCCCCcE
Confidence            3455565555533221   1122  2456667789998  88888887776666665532 12111111    1122334


Q ss_pred             EEEEeCCe---EEEEe--cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717          147 SVTFCDGK---IFTAH--QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN  221 (437)
Q Consensus       147 ~l~~~~~~---l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  221 (437)
                      .+.++++.   +++..  ..+.|..+.+...........+.           ....+  .......-......+.++.|+
T Consensus        87 ~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~-----------~~~~~--~~~~~~~~~q~~~h~h~v~~s  153 (365)
T d1jofa_          87 ANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVS-----------ETGKL--EKNVQNYEYQENTGIHGMVFD  153 (365)
T ss_dssp             GGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEEC-----------TTCCE--EEEEEEEECCTTCCEEEEEEC
T ss_pred             EEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeee-----------eccee--cCcccCcccCCCCcceEEEEC
Confidence            55555443   22222  23455554433211000000000           00000  000000111233457899999


Q ss_pred             C--CeEEEEEC-CCcEEEEECCCc-ceE--EEee--cccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccce-ee
Q 013717          222 N--GLIYSVSW-DKSLKIWRASDL-RCL--ESIK--AHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHA-LI  290 (437)
Q Consensus       222 ~--~~l~~~~~-dg~i~iwd~~~~-~~~--~~~~--~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~-~~  290 (437)
                      |  +++++++. ...|.+|+.... ...  ....  ........++|+|+++  .++...++.|.+|++........ ..
T Consensus       154 PdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~  233 (365)
T d1jofa_         154 PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTH  233 (365)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred             CCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEe
Confidence            8  66777654 457888876543 222  1221  2345788999999998  45666789999999865432111 11


Q ss_pred             EEee--------------CccccEEEEEEccCCCEEEEEeC------CCcEEEEECCCCccceEEee--eecccccceEE
Q 013717          291 ATLE--------------KHKSAVNALALSDDGTVLFSGAC------DRSILVWDREDSANHMVVTG--ALRGHGKAILC  348 (437)
Q Consensus       291 ~~~~--------------~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~--~~~~~~~~i~~  348 (437)
                      ....              ........+.++|||++|+++..      .+.|..|++...........  ...........
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~  313 (365)
T d1jofa_         234 HSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNA  313 (365)
T ss_dssp             EEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCC
T ss_pred             eeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccE
Confidence            1111              12234668899999999988743      22377787765432221111  11112223334


Q ss_pred             EEe---eCCEEEEE-eCCCcEEEeeCCCC
Q 013717          349 LIN---VAGLLMSG-SADRTVRIWQRGSD  373 (437)
Q Consensus       349 ~~~---~~~~l~~~-~~dg~i~iwd~~~~  373 (437)
                      +++   ++++|+++ ..++.|.+|++...
T Consensus       314 i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         314 VSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            444   45666555 56789999988653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.74  E-value=5.9e-06  Score=68.15  Aligned_cols=229  Identities=11%  Similarity=0.043  Sum_probs=125.3

Q ss_pred             CCeEEEEee--CCEEEEEe-cC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecC-CeEEEEeCCCC
Q 013717           99 LPIGCIAVH--HNFLYAAS-SH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQD-CKIRVWQLTPT  172 (437)
Q Consensus        99 ~~V~~l~~~--~~~l~s~~-~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~d-g~i~iwd~~~~  172 (437)
                      ..-..|+++  |+..++.. .. .+..++..... ......    .-......++++++. ++.+... +.+++++-.+.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~-~~~~~~----~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~   88 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG-TTVLPF----NGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN   88 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----C-EEECCC----CSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCce-EEEecc----CCccCceEEEEcCCCCEEEeeeeeceeeeeeeccc
Confidence            344788888  77655544 43 67777666531 112221    112345677887654 5544444 44444443332


Q ss_pred             cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeec
Q 013717          173 KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKA  250 (437)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~  250 (437)
                      ......                               .......++++++  +++++-..+..+..++............
T Consensus        89 ~~~~~~-------------------------------~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~  137 (260)
T d1rwia_          89 QTVLPF-------------------------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT  137 (260)
T ss_dssp             CEECCC-------------------------------CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCC
T ss_pred             eeeeee-------------------------------eeeeecccccccccceeEeeccccccccccccccceeeeeeec
Confidence            211111                               1224567888877  4444444555677776655433222222


Q ss_pred             ccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 013717          251 HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDS  329 (437)
Q Consensus       251 ~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  329 (437)
                      .......+++.+++. +++...++.|..+|.....    ..............|++.++|+++++....+.|..++....
T Consensus       138 ~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~----~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         138 GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN----QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC----EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred             ccCCcceeeecCCCCEeeeccccccccccccccce----eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence            234567899999988 6666778889999876432    11111233456789999999998888888888988887544


Q ss_pred             ccceEEeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCC
Q 013717          330 ANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRG  371 (437)
Q Consensus       330 ~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~  371 (437)
                      ...  ...  ...-.....++++  ++++++-..+++|+.++..
T Consensus       214 ~~~--~~~--~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         214 TST--VLP--FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             CCE--ECC--CCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             eEE--EEc--cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            211  111  1112233455554  3455555556666655433

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.74  E-value=6.5e-06  Score=69.60  Aligned_cols=218  Identities=11%  Similarity=-0.020  Sum_probs=132.2

Q ss_pred             cEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717          144 SVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN  221 (437)
Q Consensus       144 ~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  221 (437)
                      .+..+++.+++  +++...+++|..|+......  .                              +......+.++++.
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~--~------------------------------~~~~~~~~~gla~~   76 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ--I------------------------------HATVEGKVSGLAFT   76 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE--E------------------------------EEECSSEEEEEEEC
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE--E------------------------------EEcCCCCcceEEEc
Confidence            57889999776  66667788888888653321  1                              12355678899998


Q ss_pred             C--CeEEEEECCCcEEEEECCCcce-EEEee--cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeE----
Q 013717          222 N--GLIYSVSWDKSLKIWRASDLRC-LESIK--AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIA----  291 (437)
Q Consensus       222 ~--~~l~~~~~dg~i~iwd~~~~~~-~~~~~--~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~----  291 (437)
                      +  +++++...++.+..++...... ...+.  ......+.+++.+++. +++.+.++.+..+|............    
T Consensus        77 ~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~  156 (302)
T d2p4oa1          77 SNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLA  156 (302)
T ss_dssp             TTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGS
T ss_pred             CCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccc
Confidence            8  7777777888888887654322 12221  2445688999999999 66667788888887654321100000    


Q ss_pred             --EeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEee
Q 013717          292 --TLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQ  369 (437)
Q Consensus       292 --~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd  369 (437)
                        ...........+.++. +.++++.+..+.|+.++....................-.++..+++++++...++.|..++
T Consensus       157 ~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~  235 (302)
T d2p4oa1         157 RSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIA  235 (302)
T ss_dssp             CSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred             eeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEEC
Confidence              0001123456666653 3456666778899999887643322111111112222255555677777777889999997


Q ss_pred             CCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717          370 RGSDGRFGCLAVLEGHTKPVKSLTAVT  396 (437)
Q Consensus       370 ~~~~~~~~~~~~~~~h~~~v~~l~~~~  396 (437)
                      .....  ..+......-...++++|..
T Consensus       236 p~G~~--~~~~~~~~~~~~pt~vafg~  260 (302)
T d2p4oa1         236 PDRST--TIIAQAEQGVIGSTAVAFGQ  260 (302)
T ss_dssp             TTCCE--EEEECGGGTCTTEEEEEECC
T ss_pred             CCCCE--EEEEecCCCCCCceEEEEcC
Confidence            76421  23333343445688999954

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.74  E-value=8.6e-06  Score=67.11  Aligned_cols=233  Identities=10%  Similarity=0.042  Sum_probs=130.9

Q ss_pred             CcccEEEEEEeCCe--EEE-EecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEE
Q 013717          141 SSGSVKSVTFCDGK--IFT-AHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTG  217 (437)
Q Consensus       141 h~~~v~~l~~~~~~--l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  217 (437)
                      +......|++.+++  +++ .+..+.+..++...........                              .-......
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~------------------------------~~~~~p~g   61 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPF------------------------------NGLYQPQG   61 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCC------------------------------CSCCSCCC
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEecc------------------------------CCccCceE
Confidence            33456889998654  333 3455677776655432111110                              01123456


Q ss_pred             EEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEee
Q 013717          218 LAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLE  294 (437)
Q Consensus       218 ~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  294 (437)
                      +++++  ..+++....+.+++++..+...+.... .......+++.+++. +++-..+..+..++......   ..... 
T Consensus        62 vav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~---~~~~~-  136 (260)
T d1rwia_          62 LAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ---TVLPF-  136 (260)
T ss_dssp             EEECTTCCEEEEETTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC---EECCC-
T ss_pred             EEEcCCCCEEEeeeeeceeeeeeeccceeeeeee-eeeecccccccccceeEeecccccccccccccccee---eeeee-
Confidence            77776  444444444455555544444333222 235578999999988 45555566677776543221   11111 


Q ss_pred             CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCCC
Q 013717          295 KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~  372 (437)
                      ........++++++|+++++...++.|..+|........ .   ..........++++  ++++++....+.|..++...
T Consensus       137 ~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~-~---~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         137 TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV-L---PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEE-C---CCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC
T ss_pred             cccCCcceeeecCCCCEeeeccccccccccccccceeee-e---eccccCCCccceeeeeeeeeeeecCCCEEEEEeCCC
Confidence            123445789999999988888888899999987543211 1   11223344556655  44766666778888887664


Q ss_pred             CCCeeeeeee-cCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          373 DGRFGCLAVL-EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       373 ~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      ..    ...+ ...-....+|++.+++.     ++++-..+++|+..+..
T Consensus       213 ~~----~~~~~~~~~~~P~~i~~d~~g~-----l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         213 TT----STVLPFTGLNTPLAVAVDSDRT-----VYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             SC----CEECCCCSCCCEEEEEECTTCC-----EEEEEGGGTEEEEECCC
T ss_pred             Ce----EEEEccCCCCCeEEEEEeCCCC-----EEEEECCCCEEEEEeCC
Confidence            33    1222 22334578999998874     66666666666655433

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=2.5e-05  Score=64.46  Aligned_cols=230  Identities=11%  Similarity=0.047  Sum_probs=127.3

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC-C--eEEEEeCCCCcccccccccCccccceeeec
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD-C--KIRVWQLTPTKHHKLKTTLPTVNDRLLRFM  192 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  192 (437)
                      .|.|-|.+....+.+..      +...+..-+|+||+  |+..... +  .+.+.+...+.....               
T Consensus        20 ~l~i~d~dG~~~~~l~~------~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~---------------   78 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHR------SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV---------------   78 (269)
T ss_dssp             EEEEEETTSCSCEEEEE------ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE---------------
T ss_pred             EEEEEcCCCCCcEEEec------CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEE---------------
Confidence            57788887754444433      45678899999886  6544332 2  355556554432221               


Q ss_pred             CCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE-CCCcEEEE--ECCCcceEEEeecccccEEEEEEecCCe--
Q 013717          193 LPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS-WDKSLKIW--RASDLRCLESIKAHEDAVNAVAVSAGGT--  265 (437)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~--  265 (437)
                                      ..+........|++  ..++... .++...++  .......... ...........+++++.  
T Consensus        79 ----------------~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  141 (269)
T d2hqsa1          79 ----------------ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNL  141 (269)
T ss_dssp             ----------------ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC-CCCSSCEEEEEECTTSSEE
T ss_pred             ----------------eeeecccccceecCCCCeeeEeeecCCccceeecccccccceee-eeccccccccccccccccc
Confidence                            23666777888888  4444443 33333333  3222222222 23344445556677766  


Q ss_pred             EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC-c--EEEEECCCCccceEEeeeeccc
Q 013717          266 VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR-S--ILVWDREDSANHMVVTGALRGH  342 (437)
Q Consensus       266 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~--i~i~d~~~~~~~~~~~~~~~~~  342 (437)
                      +++...+|...+|.......   ................|+|+++.++..+.++ .  +.+.+...+.  .....  ...
T Consensus       142 ~~~~~~~g~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~--~~~  214 (269)
T d2hqsa1         142 AFTSDQAGRPQVYKVNINGG---APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVLS--STF  214 (269)
T ss_dssp             EEEECTTSSCEEEEEETTSS---CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC--EEECC--CSS
T ss_pred             eecccccCCceEeeeecccc---cceeeecccccccccccccccceeEEEeecCCceeeeEeeccccc--ceEee--cCc
Confidence            55555666555553322221   1223334566777889999999888765543 3  4444544332  22221  112


Q ss_pred             ccceEEEEeeCCEEEEEeC---CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717          343 GKAILCLINVAGLLMSGSA---DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT  396 (437)
Q Consensus       343 ~~~i~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~  396 (437)
                      ......++++|+.|+..+.   ...|+++++..+.    ...+....+.+...+|+|
T Consensus       215 ~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~----~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         215 LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF----KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC----EEECCCSSSEEEEEEECC
T ss_pred             cccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC----EEEEeCCCCcEEeEEeCC
Confidence            2222345556666654443   3468899998654    345555667788899998

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.69  E-value=6.2e-05  Score=63.84  Aligned_cols=237  Identities=12%  Similarity=0.157  Sum_probs=135.2

Q ss_pred             ccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe
Q 013717          143 GSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV  220 (437)
Q Consensus       143 ~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  220 (437)
                      ..+..++|.+++  +++-...+.|..|+.++++.....                              .........+++
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~------------------------------~~~~~~p~gla~   89 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF------------------------------VSHKANPAAIKI   89 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE------------------------------ECSSSSEEEEEE
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE------------------------------eCCCCCeeEEEE
Confidence            345678887554  444456788888887665422221                              123446778888


Q ss_pred             CC-CeEEEEEC-----CCcEEEEECCCcceEEEee--cccccEEEEEEecCCeEEEEeCC-------CeEEEecCCCCcc
Q 013717          221 NN-GLIYSVSW-----DKSLKIWRASDLRCLESIK--AHEDAVNAVAVSAGGTVYTGSAD-------RKIRVWAKPFNEK  285 (437)
Q Consensus       221 ~~-~~l~~~~~-----dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~l~~~~~d-------g~v~iwd~~~~~~  285 (437)
                      ++ ..++++..     .+.+...+...........  ......+.+++.++|.+..+...       +.+..++....  
T Consensus        90 ~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~--  167 (319)
T d2dg1a1          90 HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR--  167 (319)
T ss_dssp             CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC--
T ss_pred             CCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc--
Confidence            87 44444432     2345555655554443332  12345788999999996665543       23444443321  


Q ss_pred             cceeeEEeeCccccEEEEEEccCCCEEEE-EeCCCcEEEEECCCCccceEEee-----eecccccce--EEEEeeCCEEE
Q 013717          286 RHALIATLEKHKSAVNALALSDDGTVLFS-GACDRSILVWDREDSANHMVVTG-----ALRGHGKAI--LCLINVAGLLM  357 (437)
Q Consensus       286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~~~~i--~~~~~~~~~l~  357 (437)
                         .+..+...-...+.++|+|+++.|+. -+..+.|+.|++...........     ...+. ...  +++..++++.+
T Consensus       168 ---~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~-~~PdGl~vD~~G~l~V  243 (319)
T d2dg1a1         168 ---TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYV  243 (319)
T ss_dssp             ---CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEE
T ss_pred             ---eeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCc-cceeeeeEcCCCCEEE
Confidence               12222223345678999999986654 45678999999875432221111     11111 112  34444566777


Q ss_pred             EEeCCCcEEEeeCCCCCCeeeeeeec------CCCCCeeEEEEEccCCCCceEEEEEec---CCCcEEEEeeccC
Q 013717          358 SGSADRTVRIWQRGSDGRFGCLAVLE------GHTKPVKSLTAVTEEGQNGVVSVFSGS---LDGEIRAWQVSVS  423 (437)
Q Consensus       358 ~~~~dg~i~iwd~~~~~~~~~~~~~~------~h~~~v~~l~~~~~~~~~~~~~l~s~~---~dg~i~iw~~~~~  423 (437)
                      +....+.|.+||-. ++   .+..+.      ++...+++++|.+....    ++++..   .++.-.+|.++.+
T Consensus       244 a~~~~g~V~~~~p~-G~---~l~~i~~P~~~~~~~~~~~~~~~~~~~~~----~~~t~~~~~~~~~g~l~~~~~~  310 (319)
T d2dg1a1         244 AMYGQGRVLVFNKR-GY---PIGQILIPGRDEGHMLRSTHPQFIPGTNQ----LIICSNDIEMGGGSMLYTVNGF  310 (319)
T ss_dssp             EEETTTEEEEECTT-SC---EEEEEECTTGGGTCSCBCCEEEECTTSCE----EEEEEECGGGTCCEEEEEEECS
T ss_pred             EEcCCCEEEEECCC-Cc---EEEEEeCCCcCCCcCceeeeEEEeCCCCE----EEEEcCCCCcCCceeEEEEeCC
Confidence            77888999999954 55   333332      34557889999887653    555543   2344556666554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.63  E-value=8.3e-05  Score=62.19  Aligned_cols=219  Identities=9%  Similarity=0.047  Sum_probs=132.9

Q ss_pred             EEEee---CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC-eEEEEecCCeEEEEeCCCCccccc
Q 013717          103 CIAVH---HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG-KIFTAHQDCKIRVWQLTPTKHHKL  177 (437)
Q Consensus       103 ~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~  177 (437)
                      +..|+   +.+.++--.+ .|..||.+++..... .      ....+.++++.++ .|+.++.+ .|.++|..+++....
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~-~------~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l   93 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKTVH-A------LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLH   93 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-E------CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEEEE-E------CCCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEE
Confidence            34465   3444444355 899999998643322 2      2346778888744 47777765 588899988764332


Q ss_pred             ccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEEC-----CCcEEEEECCCcceEEEeecc
Q 013717          178 KTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSW-----DKSLKIWRASDLRCLESIKAH  251 (437)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~  251 (437)
                      .....                          ......++++.+.+ ..+..+..     .+.-.+|.+..++...... .
T Consensus        94 ~~~~~--------------------------~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~  146 (295)
T d2ghsa1          94 AELES--------------------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-D  146 (295)
T ss_dssp             ECSST--------------------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-E
T ss_pred             eeeec--------------------------CCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-c
Confidence            21110                          01223577788877 44444432     2345667666665544443 3


Q ss_pred             cccEEEEEEecCCe--EEEEeCCCeEEEecCCCCccc----ceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717          252 EDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKR----HALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD  325 (437)
Q Consensus       252 ~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  325 (437)
                      -..-+.++|++++.  +++-+..+.|..|++......    ........+.......+++..+|++.++.-..+.|..||
T Consensus       147 ~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d  226 (295)
T d2ghsa1         147 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD  226 (295)
T ss_dssp             ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred             cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec
Confidence            34567899999997  566677889999987532211    122223334456788999999999888877788999999


Q ss_pred             CCCCccceEEeeeecccccceEEEEeeCC----EEEEEeC
Q 013717          326 REDSANHMVVTGALRGHGKAILCLINVAG----LLMSGSA  361 (437)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~l~~~~~  361 (437)
                      .. ++..    ..+.--...+++++|-|.    +++|...
T Consensus       227 p~-G~~~----~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         227 TD-GNHI----ARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             TT-CCEE----EEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CC-CcEe----eEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence            64 4422    222222345788888653    5555443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.61  E-value=9.3e-05  Score=62.51  Aligned_cols=241  Identities=14%  Similarity=0.099  Sum_probs=135.7

Q ss_pred             eEEEEee--CCEEEEEec-------C-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEe
Q 013717          101 IGCIAVH--HNFLYAASS-------H-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQ  168 (437)
Q Consensus       101 V~~l~~~--~~~l~s~~~-------d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd  168 (437)
                      ...++|+  |+++++...       + .|..||.+++........ ......+....++|.++.  ++++...+.|...+
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~-~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~   98 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP-EVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ   98 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC-EETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECC-ccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence            4556777  666665432       2 588888888644333221 001122346789998653  77777777788888


Q ss_pred             CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEEC----------------C
Q 013717          169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSW----------------D  231 (437)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~----------------d  231 (437)
                      .+..............                          .-...+.+++++ ..|+.+..                +
T Consensus        99 ~~g~~~~~~~~~~~g~--------------------------~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~  152 (314)
T d1pjxa_          99 TDGTFEEIAKKDSEGR--------------------------RMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             TTSCEEECCSBCTTSC--------------------------BCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             CCCcEEEEEecccccc--------------------------ccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence            7755322211111000                          011235566666 33333321                2


Q ss_pred             CcEEEEECCCcceEEEeecccccEEEEEEecCC-----eE-EEEeCCCeEEEecCCCCcccc--eeeEEeeC-ccccEEE
Q 013717          232 KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG-----TV-YTGSADRKIRVWAKPFNEKRH--ALIATLEK-HKSAVNA  302 (437)
Q Consensus       232 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-----~l-~~~~~dg~v~iwd~~~~~~~~--~~~~~~~~-~~~~i~~  302 (437)
                      |.|..++. .++..... ..-..-+.++|+|++     .| ++-+..+.|..||+.......  +....+.. .......
T Consensus       153 G~v~~~~~-dg~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdG  230 (314)
T d1pjxa_         153 GSIYCFTT-DGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG  230 (314)
T ss_dssp             EEEEEECT-TSCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred             ceEEEEee-cCceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccccccee
Confidence            33444443 23333222 223345678898865     34 455678889999875332111  11122222 2234678


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCC
Q 013717          303 LALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDG  374 (437)
Q Consensus       303 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~  374 (437)
                      +++..+|++.++....+.|.+||.+.+.....    +........+++|.++   ++++.+.+|.|..+++....
T Consensus       231 iavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~----i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMR----IRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             EEEBTTCCEEEEEETTTEEEEECTTCBSCSEE----EECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             eEEecCCcEEEEEcCCCEEEEEeCCCCEEEEE----EECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence            99999999888888889999999876653322    2223345667777654   66777778888888876533

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=8.4e-05  Score=61.15  Aligned_cols=229  Identities=8%  Similarity=-0.000  Sum_probs=124.6

Q ss_pred             eeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEecC----eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC
Q 013717           79 TINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASSH----EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD  152 (437)
Q Consensus        79 ~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d----~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  152 (437)
                      .|.+.+.+.... .....+...+.+-+|+  |+.||-....    .+.+.+..++....+.      .+.+......|++
T Consensus        20 ~l~i~d~dG~~~-~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~sp   92 (269)
T d2hqsa1          20 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA------SFPRHNGAPAFSP   92 (269)
T ss_dssp             EEEEEETTSCSC-EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE------CCSSCEEEEEECT
T ss_pred             EEEEEcCCCCCc-EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEe------eeecccccceecC
Confidence            455555543222 2223567778899999  8999866533    5777777775433332      3667788889997


Q ss_pred             Ce--EEEE-ecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEE
Q 013717          153 GK--IFTA-HQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIY  226 (437)
Q Consensus       153 ~~--l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~  226 (437)
                      +.  ++.. ..++...++............                             ...........+..   ..++
T Consensus        93 dg~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~  143 (269)
T d2hqsa1          93 DGSKLAFALSKTGSLNLYVMDLASGQIRQV-----------------------------TDGRSNNTEPTWFPDSQNLAF  143 (269)
T ss_dssp             TSSEEEEEECTTSSCEEEEEETTTCCEEEC-----------------------------CCCSSCEEEEEECTTSSEEEE
T ss_pred             CCCeeeEeeecCCccceeecccccccceee-----------------------------eecccccccccccccccccee
Confidence            76  4433 233333333222111100000                             01222222223333   3444


Q ss_pred             EEECCCc--EEEEECCCcceEEEeecccccEEEEEEecCCe-EEEE-eCCCeEEEecCCCCcccceeeEEeeCccccEEE
Q 013717          227 SVSWDKS--LKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTG-SADRKIRVWAKPFNEKRHALIATLEKHKSAVNA  302 (437)
Q Consensus       227 ~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~  302 (437)
                      +...+|.  |.+.++..+... .+...........|+|+++ ++.. ...+...+|........   . ...........
T Consensus       144 ~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~---~-~~~~~~~~~~~  218 (269)
T d2hqsa1         144 TSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG---V-QVLSSTFLDET  218 (269)
T ss_dssp             EECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC---E-EECCCSSSCEE
T ss_pred             cccccCCceEeeeecccccce-eeecccccccccccccccceeEEEeecCCceeeeEeeccccc---c-eEeecCccccc
Confidence            4445554  555566555433 3334566677888999998 5444 44555555544322211   1 22234455677


Q ss_pred             EEEccCCCEEEEEeC---CCcEEEEECCCCccceEEeeeecccccceEEEEeeC
Q 013717          303 LALSDDGTVLFSGAC---DRSILVWDREDSANHMVVTGALRGHGKAILCLINVA  353 (437)
Q Consensus       303 ~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~  353 (437)
                      ..|+|||++|+..+.   ...|+++++..+.. .    .+....+.+...+|+|
T Consensus       219 p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~----~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         219 PSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-A----RLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EEECTTSSEEEEEEEETTEEEEEEEETTSCCE-E----ECCCSSSEEEEEEECC
T ss_pred             eEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-E----EEeCCCCcEEeEEeCC
Confidence            899999998875543   45788999976542 1    2333455566667765

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.40  E-value=0.00039  Score=58.72  Aligned_cols=220  Identities=9%  Similarity=0.058  Sum_probs=124.9

Q ss_pred             CeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEec-----CCeEEEEeCC
Q 013717          100 PIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQ-----DCKIRVWQLT  170 (437)
Q Consensus       100 ~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~-----dg~i~iwd~~  170 (437)
                      .+..++|+  |++.++-..+ .|..|+.+++.......     ........|++.+++ |+.+..     .+.+...+..
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~-----~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~  115 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV-----SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN  115 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE-----CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEe-----CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCC
Confidence            34678887  7766666566 89999988753222211     244567899998665 554432     2234444444


Q ss_pred             CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECC-------CcEEEEECCCc
Q 013717          171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWD-------KSLKIWRASDL  242 (437)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~d-------g~i~iwd~~~~  242 (437)
                      ...........                            .-....+.+++.+ ..++.+...       +.+..++... 
T Consensus       116 ~~~~~~~~~~~----------------------------~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-  166 (319)
T d2dg1a1         116 GDNLQDIIEDL----------------------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-  166 (319)
T ss_dssp             SCSCEEEECSS----------------------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-
T ss_pred             CceeeeeccCC----------------------------CcccCCcceeEEeccceeecccccccccCcceeEEEeccc-
Confidence            33221111100                            1223466777877 444444432       2355555433 


Q ss_pred             ceEEEeecccccEEEEEEecCCe-E-EEEeCCCeEEEecCCCCcccceeeE----EeeCccccEEEEEEccCCCEEEEEe
Q 013717          243 RCLESIKAHEDAVNAVAVSAGGT-V-YTGSADRKIRVWAKPFNEKRHALIA----TLEKHKSAVNALALSDDGTVLFSGA  316 (437)
Q Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~-l-~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~  316 (437)
                      +.+..+...-...+.++|+|+++ | ++-+..+.|..||+..+........    ...........|++..+|++.++..
T Consensus       167 ~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~  246 (319)
T d2dg1a1         167 RTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY  246 (319)
T ss_dssp             CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE
T ss_pred             ceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc
Confidence            33333333334567899999997 4 5556789999998865433222111    1112223467899999999888888


Q ss_pred             CCCcEEEEECCCCccceEEeee--ecccccceEEEEeeCC
Q 013717          317 CDRSILVWDREDSANHMVVTGA--LRGHGKAILCLINVAG  354 (437)
Q Consensus       317 ~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~  354 (437)
                      ..+.|.+||. .++....+...  ..++...+.++++.+.
T Consensus       247 ~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~  285 (319)
T d2dg1a1         247 GQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG  285 (319)
T ss_dssp             TTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred             CCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCC
Confidence            8999999996 45433222211  1133445667777643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.35  E-value=0.00049  Score=57.31  Aligned_cols=186  Identities=11%  Similarity=0.022  Sum_probs=111.0

Q ss_pred             CCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeec----ccccEEEEEEecCCeEEEEeC-----CCeEEEecCC
Q 013717          212 GDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKA----HEDAVNAVAVSAGGTVYTGSA-----DRKIRVWAKP  281 (437)
Q Consensus       212 ~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~~~~~-----dg~v~iwd~~  281 (437)
                      ...+.++++.+ ..++.++.+ .|.++|..+++.......    ....++.+.+.|+|.+..++.     .+.-.+|.+.
T Consensus        58 ~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~  136 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA  136 (295)
T ss_dssp             SSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             CCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeec
Confidence            34577787766 666666665 588999998875443321    123588999999999666653     2334455443


Q ss_pred             CCcccceeeEEeeCccccEEEEEEccCCCEEE-EEeCCCcEEEEECCCCccc----eEEeeeecccccceEEEEee--CC
Q 013717          282 FNEKRHALIATLEKHKSAVNALALSDDGTVLF-SGACDRSILVWDREDSANH----MVVTGALRGHGKAILCLINV--AG  354 (437)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~~~~i~~~~~~--~~  354 (437)
                      .+    +..... ..-...+.++|+++++.++ +-+..+.|+.|++......    ........+.....-.+..+  ++
T Consensus       137 ~g----~~~~~~-~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn  211 (295)
T d2ghsa1         137 KG----KVTKLF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH  211 (295)
T ss_dssp             TT----EEEEEE-EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC
T ss_pred             CC----cEEEEe-eccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC
Confidence            22    122222 2334567899999998665 4455788999987532111    11111222333344455554  55


Q ss_pred             EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc-cCCCCceEEEEEecC
Q 013717          355 LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT-EEGQNGVVSVFSGSL  411 (437)
Q Consensus       355 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~~~~~l~s~~~  411 (437)
                      +.++.-..+.|..||-. ++   .+..+.--...+++++|-. +.+    .+++|...
T Consensus       212 lWva~~~~g~V~~~dp~-G~---~~~~i~lP~~~~T~~~FGG~d~~----~LyvTta~  261 (295)
T d2ghsa1         212 IWNARWGEGAVDRYDTD-GN---HIARYEVPGKQTTCPAFIGPDAS----RLLVTSAR  261 (295)
T ss_dssp             EEEEEETTTEEEEECTT-CC---EEEEEECSCSBEEEEEEESTTSC----EEEEEEBC
T ss_pred             EEeeeeCCCceEEecCC-Cc---EeeEecCCCCceEEEEEeCCCCC----EEEEEECC
Confidence            66655567889999954 54   5555554445789999974 433    36666544

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=0.0023  Score=52.00  Aligned_cols=247  Identities=10%  Similarity=0.033  Sum_probs=138.6

Q ss_pred             CEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEe--CCeE-EEEecCCeEEEEeCCCCcccccccccCccc
Q 013717          109 NFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC--DGKI-FTAHQDCKIRVWQLTPTKHHKLKTTLPTVN  185 (437)
Q Consensus       109 ~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  185 (437)
                      .+|+-+..+.|+-.+++...............+...+.+|+|.  .+.+ .+-..++.|+..+++.........      
T Consensus         2 ~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~------   75 (263)
T d1npea_           2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR------   75 (263)
T ss_dssp             EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC------
T ss_pred             CEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEE------
Confidence            4555555557777777653222211111112244567788887  3444 444566788888887554222211      


Q ss_pred             cceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEE-ECCCcEEEEECCCcceEEEeecccccEEEEEEec
Q 013717          186 DRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSV-SWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA  262 (437)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  262 (437)
                                              .....+.+++++.  +.|+.+ ...+.|.+.++........+.........++++|
T Consensus        76 ------------------------~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp  131 (263)
T d1npea_          76 ------------------------QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDP  131 (263)
T ss_dssp             ------------------------TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET
T ss_pred             ------------------------eccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEec
Confidence                                    1224567888864  555544 4567899999876554333333346788999998


Q ss_pred             CCe-EE-EEeCCCe--EEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE-eCCCcEEEEECCCCccceEEee
Q 013717          263 GGT-VY-TGSADRK--IRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG-ACDRSILVWDREDSANHMVVTG  337 (437)
Q Consensus       263 ~~~-l~-~~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~  337 (437)
                      ... +. +-...+.  |...++....  ...  .....-.....+++++.++.|..+ ...+.|...++....... +. 
T Consensus       132 ~~g~ly~t~~~~~~~~I~r~~~dG~~--~~~--i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~-v~-  205 (263)
T d1npea_         132 VRGNLYWTDWNRDNPKIETSHMDGTN--RRI--LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK-VL-  205 (263)
T ss_dssp             TTTEEEEEECCSSSCEEEEEETTSCC--CEE--EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE-EE-
T ss_pred             ccCcEEEeecCCCCcEEEEecCCCCC--cee--eeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEE-EE-
Confidence            655 33 3222223  4444443221  111  122233567899999887777555 457789999987543222 22 


Q ss_pred             eecccccceEEEEeeCCEEEEEe-CCCcEEEeeCCCCCCeeeeeeec-CCCCCeeEEEEEcc
Q 013717          338 ALRGHGKAILCLINVAGLLMSGS-ADRTVRIWQRGSDGRFGCLAVLE-GHTKPVKSLTAVTE  397 (437)
Q Consensus       338 ~~~~~~~~i~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~~~  397 (437)
                        .+.. ....++..++.|+... ..+.|...|..+++   .+..+. .......+|+..++
T Consensus       206 --~~~~-~P~~lav~~~~lYwtd~~~~~I~~~~~~~g~---~~~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         206 --EGLQ-YPFAVTSYGKNLYYTDWKTNSVIAMDLAISK---EMDTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             --ECCC-SEEEEEEETTEEEEEETTTTEEEEEETTTTE---EEEEECCSSCCCCCCEEEECS
T ss_pred             --CCCC-CcEEEEEECCEEEEEECCCCEEEEEECCCCc---cceEECCCCCCCcceEEEeCC
Confidence              2211 2356777777555554 56788888888765   333332 23334556666554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=0.0037  Score=55.56  Aligned_cols=337  Identities=7%  Similarity=-0.064  Sum_probs=159.2

Q ss_pred             cCCCceeEEecCCCcceeeee-c--CccCCeEEEEee--CCEEEEEec---------C-eEEEEeCCCCceeeeeccccC
Q 013717           74 LSPDETINFSSASHLCINSVQ-L--GHKLPIGCIAVH--HNFLYAASS---------H-EINVYDRTGTTWTSINTFNDN  138 (437)
Q Consensus        74 ~s~dg~i~~~~~~~~~~~~~~-~--~h~~~V~~l~~~--~~~l~s~~~---------d-~v~vwd~~~~~~~~~~~~~~~  138 (437)
                      ...+|.+.+++.......... .  -....+....++  +++++.+..         . .+.++|+.++....+...   
T Consensus        33 ~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~---  109 (465)
T d1xfda1          33 REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPP---  109 (465)
T ss_dssp             CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCT---
T ss_pred             EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCc---
Confidence            456778888888655442222 1  223466677777  788776642         3 788999998765555432   


Q ss_pred             CCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCcc------c----------cceee-ecCCCCeeE
Q 013717          139 DSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTV------N----------DRLLR-FMLPNSYVT  199 (437)
Q Consensus       139 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------~----------~~~~~-~~~~~~~~~  199 (437)
                      ......+....|+|++  ++-.. ++.|.+.+..++...+....-...      .          ..... +.+.+..++
T Consensus       110 ~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~ia  188 (465)
T d1xfda1         110 EVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLA  188 (465)
T ss_dssp             TCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEE
T ss_pred             cCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEE
Confidence            2344556678899876  55544 678888888766544333211100      0          00111 122233333


Q ss_pred             Eeecc---ceee--e----cCCCcEEEEEeCCCeEEEEEC--CCcEEEEECCCcceEEEee------cccccEEEEEEec
Q 013717          200 VRRHK---KKLW--I----EHGDAVTGLAVNNGLIYSVSW--DKSLKIWRASDLRCLESIK------AHEDAVNAVAVSA  262 (437)
Q Consensus       200 ~~~~~---~~~~--~----~~~~~v~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~  262 (437)
                      .....   ...+  .    .....+..+.+..    .|..  ...+.++|+.++.......      .....+..+.|.+
T Consensus       189 f~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~----~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~  264 (465)
T d1xfda1         189 YAAINDSRVPIMELPTYTGSIYPTVKPYHYPK----AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT  264 (465)
T ss_dssp             EEEEECTTSCEEEECCCSSSSSCCCEEEECCB----TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS
T ss_pred             EEEecccccceeecccccccccceeeeeeccc----cCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcC
Confidence            32211   1110  0    0011122222210    0111  1246778876654332221      1223477889999


Q ss_pred             CCeEEEEe--CC---CeEEEecCCCCcccceeeEEeeCcccc----EEEEEEccCCCEEE---EEeCCC--cEEEEECCC
Q 013717          263 GGTVYTGS--AD---RKIRVWAKPFNEKRHALIATLEKHKSA----VNALALSDDGTVLF---SGACDR--SILVWDRED  328 (437)
Q Consensus       263 ~~~l~~~~--~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~---~~~~dg--~i~i~d~~~  328 (437)
                      +++++...  .+   ..|.++|..++..  ..+..-. ....    -....|++||+.++   ....+|  .++.+++..
T Consensus       265 d~~~~~~~~nR~q~~~~i~~~d~~tg~~--~~~~~e~-~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~  341 (465)
T d1xfda1         265 STKVAVTWLNRAQNVSILTLCDATTGVC--TKKHEDE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS  341 (465)
T ss_dssp             SSEEEEEEEETTSCEEEEEEEETTTCCE--EEEEEEE-CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred             CCeEEEEEEccccccceEEEEcCCCCcE--EEEEEEc-CCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEecc
Confidence            99843332  22   2577777765432  1111111 1221    13457899998543   222232  344443321


Q ss_pred             Cc--cceEEeeeecccccceEEE-Eee--CC-EEEEEeCCC--cEEEee--CCCCCCeeeeeeecCCCCCeeEEEEEccC
Q 013717          329 SA--NHMVVTGALRGHGKAILCL-INV--AG-LLMSGSADR--TVRIWQ--RGSDGRFGCLAVLEGHTKPVKSLTAVTEE  398 (437)
Q Consensus       329 ~~--~~~~~~~~~~~~~~~i~~~-~~~--~~-~l~~~~~dg--~i~iwd--~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  398 (437)
                      ..  ........+....-.|..+ .++  ++ ..+++..++  .-.+|.  +.......++.....+......+.|+|++
T Consensus       342 ~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~  421 (465)
T d1xfda1         342 SQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSM  421 (465)
T ss_dssp             SSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTS
T ss_pred             ccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCC
Confidence            10  0000111122122233332 344  44 444554432  334454  44333333443333345567899999998


Q ss_pred             CCCceEEEEEecC--CCcEEEEeeccCCC
Q 013717          399 GQNGVVSVFSGSL--DGEIRAWQVSVSCP  425 (437)
Q Consensus       399 ~~~~~~~l~s~~~--dg~i~iw~~~~~~~  425 (437)
                      ..    ++.+++.  --.+.+++...++.
T Consensus       422 ~y----~v~~~s~~~~P~~~~~~~~~~~~  446 (465)
T d1xfda1         422 DF----FLLKCEGPGVPMVTVHNTTDKKK  446 (465)
T ss_dssp             SE----EEEECCSSSSCCEEEEETTTCCE
T ss_pred             CE----EEEEeecCCCCeEEEEECCCCCE
Confidence            63    4444443  23567776655543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.88  E-value=0.0088  Score=54.48  Aligned_cols=297  Identities=8%  Similarity=-0.006  Sum_probs=147.4

Q ss_pred             EEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEE-EEEEeCCeEEEEe------cCCeEEEEeCCCCcc
Q 013717          103 CIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVK-SVTFCDGKIFTAH------QDCKIRVWQLTPTKH  174 (437)
Q Consensus       103 ~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~l~s~~------~dg~i~iwd~~~~~~  174 (437)
                      .+++.+..++.++.+ .+.-.|.++++..-...+.... ....++ .-.+..+.++.+.      .+|.|+-+|+.+++.
T Consensus       110 g~a~~~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~-~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~  188 (571)
T d2ad6a1         110 GLAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPK-VGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGEL  188 (571)
T ss_dssp             CCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGG-GTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred             cceeeCCeEEEEeCCCcEEeeehhhhhhhccccccccc-cccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcE
Confidence            356666777788888 8888899997543322221100 111111 1123356655555      378899999999987


Q ss_pred             cccccccCccccceeee------cCCCCe-eEEeeccceeeecCCCcEE-EEEeCC--CeEEEEEC--------------
Q 013717          175 HKLKTTLPTVNDRLLRF------MLPNSY-VTVRRHKKKLWIEHGDAVT-GLAVNN--GLIYSVSW--------------  230 (437)
Q Consensus       175 ~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~v~-~~~~~~--~~l~~~~~--------------  230 (437)
                      .......+.........      ...... ..........+......+. ..++++  +.++.+..              
T Consensus       189 ~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n  268 (571)
T d2ad6a1         189 KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDN  268 (571)
T ss_dssp             EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred             EEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccc
Confidence            76655443211100000      000000 0000000000000011111 122222  33333322              


Q ss_pred             --CCcEEEEECCCcceEEEeecccc---------cEEEEEEecCCe----EEEEeCCCeEEEecCCCCccccee------
Q 013717          231 --DKSLKIWRASDLRCLESIKAHED---------AVNAVAVSAGGT----VYTGSADRKIRVWAKPFNEKRHAL------  289 (437)
Q Consensus       231 --dg~i~iwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~----l~~~~~dg~v~iwd~~~~~~~~~~------  289 (437)
                        ...+...|.++++.+..++....         ......+..+++    ++.++.+|.+.++|..+++.....      
T Consensus       269 ~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~  348 (571)
T d2ad6a1         269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAV  348 (571)
T ss_dssp             TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred             ccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcc
Confidence              34677889999998887763221         111222223443    677888999999987655421100      


Q ss_pred             --eEE-------------------------eeCccc--cEEEEEEccCCCEEEEEeCC----------------------
Q 013717          290 --IAT-------------------------LEKHKS--AVNALALSDDGTVLFSGACD----------------------  318 (437)
Q Consensus       290 --~~~-------------------------~~~~~~--~i~~~~~~~~~~~l~~~~~d----------------------  318 (437)
                        ...                         .....+  .-...+++|+..+++....+                      
T Consensus       349 ~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (571)
T d2ad6a1         349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT  428 (571)
T ss_dssp             CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred             cccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccc
Confidence              000                         000000  00125667766666554332                      


Q ss_pred             ---------------CcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeec
Q 013717          319 ---------------RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLE  383 (437)
Q Consensus       319 ---------------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  383 (437)
                                     |.|.-+|+.+++.............+.   +...+.++++|+.||.++-+|.++++   .+..+.
T Consensus       429 ~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~---l~TagglVf~G~~dg~l~A~Da~tGe---~lW~~~  502 (571)
T d2ad6a1         429 LAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGT---LYTKGGLVWYATLDGYLKALDNKDGK---ELWNFK  502 (571)
T ss_dssp             EEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBC---EEETTTEEEEECTTSEEEEEETTTCC---EEEEEE
T ss_pred             eeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcce---eEecCCEEEEECCCCeEEEEECCCCc---EEEEEE
Confidence                           457777888777665544332222222   33457788899999999999999998   444433


Q ss_pred             CC-CCCeeEEEEEccCCCCceEEEEEec
Q 013717          384 GH-TKPVKSLTAVTEEGQNGVVSVFSGS  410 (437)
Q Consensus       384 ~h-~~~v~~l~~~~~~~~~~~~~l~s~~  410 (437)
                      -. ...-.-+.+..++.    +|++...
T Consensus       503 l~~~~~a~P~ty~~dGk----qYi~v~~  526 (571)
T d2ad6a1         503 MPSGGIGSPMTYSFKGK----QYIGSMY  526 (571)
T ss_dssp             CSSCCCSCCEEEEETTE----EEEEEEE
T ss_pred             CCCCceecceEEEECCE----EEEEEEe
Confidence            21 11112245555665    4775543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=0.0014  Score=58.39  Aligned_cols=269  Identities=6%  Similarity=-0.022  Sum_probs=133.3

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEE---------ecCCeEEEEeCCCCcccccccccCcccc
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTA---------HQDCKIRVWQLTPTKHHKLKTTLPTVND  186 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~---------~~dg~i~iwd~~~~~~~~~~~~~~~~~~  186 (437)
                      .|.+||+.+++.+.+.....  -....+....++|++  ++..         +..+.+.++|+.++.........     
T Consensus        38 ~i~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~-----  110 (465)
T d1xfda1          38 TVRLWNVETNTSTVLIEGKK--IESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE-----  110 (465)
T ss_dssp             CEEEBCGGGCCCEEEECTTT--TTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT-----
T ss_pred             cEEEEECCCCCEEEEEcCcc--ccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCcc-----
Confidence            78899998865444433221  123456677888776  4443         33577889999877643322110     


Q ss_pred             ceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee-ccccc---------
Q 013717          187 RLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK-AHEDA---------  254 (437)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~---------  254 (437)
                                             .....+....|+|  +.+|... ++.|.+.+..++..++... +..+.         
T Consensus       111 -----------------------~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~v  166 (465)
T d1xfda1         111 -----------------------VSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL  166 (465)
T ss_dssp             -----------------------CCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHH
T ss_pred             -----------------------CCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchh
Confidence                                   1222334455666  5555544 5677777776665544432 11111         


Q ss_pred             --------EEEEEEecCCe-EEEEeC-CCeEEEe---------------------------------cCCCCcccceeeE
Q 013717          255 --------VNAVAVSAGGT-VYTGSA-DRKIRVW---------------------------------AKPFNEKRHALIA  291 (437)
Q Consensus       255 --------v~~~~~~~~~~-l~~~~~-dg~v~iw---------------------------------d~~~~~~~~~~~~  291 (437)
                              -.++-|+|||+ ||.... +..|..+                                 |+...........
T Consensus       167 yeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~  246 (465)
T d1xfda1         167 YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMP  246 (465)
T ss_dssp             HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCC
T ss_pred             hhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEec
Confidence                    24677999998 666542 2333333                                 3221111000000


Q ss_pred             --EeeCccccEEEEEEccCCCEEEEEeC----CCcEEEEECCCCccceEEeeeeccc---ccceEEEEeeCCE--EE-EE
Q 013717          292 --TLEKHKSAVNALALSDDGTVLFSGAC----DRSILVWDREDSANHMVVTGALRGH---GKAILCLINVAGL--LM-SG  359 (437)
Q Consensus       292 --~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~--l~-~~  359 (437)
                        ........+..+.|+|++++++....    ...|.++|..+++..........+.   ......+..++..  ++ ..
T Consensus       247 ~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~s  326 (465)
T d1xfda1         247 PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI  326 (465)
T ss_dssp             CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred             cCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEee
Confidence              00011224678899999886655322    2358889998876544332221110   1122334445552  22 22


Q ss_pred             eCCC--cEEEeeCCCC---CCeeeeeeecCCCCCeeEE-EEEccCCCCceEEEEEecCCC--cEEEEeec
Q 013717          360 SADR--TVRIWQRGSD---GRFGCLAVLEGHTKPVKSL-TAVTEEGQNGVVSVFSGSLDG--EIRAWQVS  421 (437)
Q Consensus       360 ~~dg--~i~iwd~~~~---~~~~~~~~~~~h~~~v~~l-~~~~~~~~~~~~~l~s~~~dg--~i~iw~~~  421 (437)
                      -.+|  .++...+...   .....+..+....-.|..+ .|..+++.    +.+++..++  .-.+|.+.
T Consensus       327 e~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~----vyF~a~~~~p~~~hly~v~  392 (465)
T d1xfda1         327 PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNK----IYFLSTEDLPRRRQLYSAN  392 (465)
T ss_dssp             CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTE----EEEEESSSCTTCCEEEEEC
T ss_pred             eecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCE----EEEEEeCCCCCceEEEEEE
Confidence            2333  3443332211   1112334444445567665 46666543    555555442  34566654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.71  E-value=0.013  Score=53.26  Aligned_cols=101  Identities=14%  Similarity=0.133  Sum_probs=61.9

Q ss_pred             CcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCC-CeeEEEEEcc
Q 013717          319 RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTK-PVKSLTAVTE  397 (437)
Q Consensus       319 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~v~~l~~~~~  397 (437)
                      |.|.-||+.+++.............   -.++..+.++++|+.||.++-||.++++   .+..+.-... .-.-+.+..+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~g---g~l~TagglVF~G~~dg~l~A~Da~tGe---~LW~~~l~~~~~~~P~ty~~d  511 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNG---GTLSTAGNLVFQGTAAGQMHAYSADKGE---ALWQFEAQSGIVAAPMTFELA  511 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCC---CEEEETTTEEEEECTTSEEEEEETTTCC---EEEEEECSSCCCSCCEEEEET
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCC---ceeEECCCEEEEECCCCcEEEEECCCCc---EeEEEECCCCccccCEEEEEC
Confidence            5678888888876665433221111   1345567788899999999999999998   4444332111 1111445556


Q ss_pred             CCCCceEEEEEecCC--------------------CcEEEEeeccCCCCCCC
Q 013717          398 EGQNGVVSVFSGSLD--------------------GEIRAWQVSVSCPNSSP  429 (437)
Q Consensus       398 ~~~~~~~~l~s~~~d--------------------g~i~iw~~~~~~~~~~~  429 (437)
                      +.    +||+..+..                    +.|.+|.|....+...|
T Consensus       512 Gk----qyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l~~F~L~g~~~~~~~  559 (560)
T d1kv9a2         512 GR----QYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGKAQLPPP  559 (560)
T ss_dssp             TE----EEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCCCCCCCC
T ss_pred             CE----EEEEEEeCCCcccccccccccccccCCCCCEEEEEEeCCCCCCCCC
Confidence            54    466544322                    46899999877665544

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.012  Score=47.58  Aligned_cols=227  Identities=14%  Similarity=0.072  Sum_probs=129.9

Q ss_pred             EEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC--CeEEEE-ecCCeEEEEeCCCCcccccccccCcccc
Q 013717          110 FLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD--GKIFTA-HQDCKIRVWQLTPTKHHKLKTTLPTVND  186 (437)
Q Consensus       110 ~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~  186 (437)
                      +|+.+....|+..++++.....+.      .....+.+|.|..  +.|+-. ..++.|.-.+++.........       
T Consensus         3 fLl~s~~~~I~~~~l~~~~~~~~~------~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~-------   69 (266)
T d1ijqa1           3 YLFFTNRHEVRKMTLDRSEYTSLI------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD-------   69 (266)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEE------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE-------
T ss_pred             EEEEECCCeEEEEECCCCcceeee------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceE-------
Confidence            455555557888899875443332      2345677888873  344433 456667666665322111100       


Q ss_pred             ceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEE-ECCCcEEEEECCCcceEEEeecccccEEEEEEecC
Q 013717          187 RLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSV-SWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAG  263 (437)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  263 (437)
                                         .+.......+.+++++.  +.|+.+ ...+.|.+.++........+.........++++|.
T Consensus        70 -------------------~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~  130 (266)
T d1ijqa1          70 -------------------TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV  130 (266)
T ss_dssp             -------------------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT
T ss_pred             -------------------EEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcc
Confidence                               00111223455677754  444444 45678999999876655555555567889999985


Q ss_pred             -CeEEEEe--CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE-eCCCcEEEEECCCCccceEEeeee
Q 013717          264 -GTVYTGS--ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG-ACDRSILVWDREDSANHMVVTGAL  339 (437)
Q Consensus       264 -~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~  339 (437)
                       |.+....  ..+.|...++....    ........-..+..+++++.++.|..+ ...+.|...++...... .+.. .
T Consensus       131 ~g~ly~~~~~~~~~I~r~~~dGs~----~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~-~~~~-~  204 (266)
T d1ijqa1         131 HGFMYWTDWGTPAKIKKGGLNGVD----IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILE-D  204 (266)
T ss_dssp             TTEEEEEECSSSCEEEEEETTSCC----EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEE-C
T ss_pred             cCeEEEeccCCCcceeEeccCCCc----eecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE-EEEe-C
Confidence             4543332  34566666664322    111222233567899999877766665 45688999998754332 2222 2


Q ss_pred             cccccceEEEEeeCCEEEEE-eCCCcEEEeeCCCCC
Q 013717          340 RGHGKAILCLINVAGLLMSG-SADRTVRIWQRGSDG  374 (437)
Q Consensus       340 ~~~~~~i~~~~~~~~~l~~~-~~dg~i~iwd~~~~~  374 (437)
                      .........++..++.|.-. ..++.|...+..+++
T Consensus       205 ~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         205 EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             TTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             CCcccccEEEEEECCEEEEEECCCCeEEEEECCCCc
Confidence            22233456788877755555 456778888877765

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.51  E-value=0.015  Score=46.81  Aligned_cols=187  Identities=14%  Similarity=0.169  Sum_probs=122.2

Q ss_pred             CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCcc----c
Q 013717          223 GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHK----S  298 (437)
Q Consensus       223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~----~  298 (437)
                      +.|+.-+ ..++.++|+++.+.+..+.- ...|.-=.|-.+..|+..+ +..|.-|+++.+.   .+.+.+..|.    .
T Consensus        75 ~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~L~lVT-~taVYHW~~~g~s---~P~k~fdR~~~L~~~  148 (327)
T d1utca2          75 KVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGES---QPVKMFDRHSSLAGC  148 (327)
T ss_dssp             SEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSSEEEEEC-SSEEEEEESSSSC---CCEEEEECCGGGTTC
T ss_pred             cEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCCEEEEEc-CCceEEEcccCCC---CchhhhhhcccccCc
Confidence            3343333 67899999999999888874 4467677787666655554 3579999996433   3455555543    5


Q ss_pred             cEEEEEEccCCCEEEEEe-------CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-----EEEEE---eCCC
Q 013717          299 AVNALALSDDGTVLFSGA-------CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-----LLMSG---SADR  363 (437)
Q Consensus       299 ~i~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~l~~~---~~dg  363 (437)
                      .|..-..++++++++..+       -.|.+.+|..+..     ..+.+.||...-..+...++     +++.+   ...+
T Consensus       149 QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-----~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~  223 (327)
T d1utca2         149 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG  223 (327)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-----EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEE
T ss_pred             eEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-----cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCc
Confidence            788888899999877543       2477889998754     34456778776666655544     23322   2236


Q ss_pred             cEEEeeCCCCCC----e--eeeeee---cCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          364 TVRIWQRGSDGR----F--GCLAVL---EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       364 ~i~iwd~~~~~~----~--~~~~~~---~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      .+.|.++.....    +  +....+   ..-.+--.++..++..+     ++..-..-|.|.+||++++..
T Consensus       224 kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kyg-----iiyviTK~G~i~lyDleTgt~  289 (327)
T d1utca2         224 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-----VVFLITKYGYIHLYDLETGTC  289 (327)
T ss_dssp             EEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTT-----EEEEEETTSEEEEEETTTCCE
T ss_pred             EEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCC-----EEEEEecCcEEEEEEcccccE
Confidence            789998876321    1  111111   12233445777777654     677788899999999999864

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.45  E-value=0.027  Score=48.22  Aligned_cols=91  Identities=13%  Similarity=0.177  Sum_probs=52.6

Q ss_pred             eEEecCCCc-ceeeeec--CccCCeEEEEee--CCEEEEEecC--eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC
Q 013717           80 INFSSASHL-CINSVQL--GHKLPIGCIAVH--HNFLYAASSH--EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD  152 (437)
Q Consensus        80 i~~~~~~~~-~~~~~~~--~h~~~V~~l~~~--~~~l~s~~~d--~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  152 (437)
                      +.+||.... .......  .|.....+.++.  +.+++.|+.+  .+.+||..+..+.....+.   .....-..+...+
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~---~~r~~~~~~~~~d  130 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ---VARGYQSSATMSD  130 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCS---SCCSSCEEEECTT
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCccccccccc---ccccccceeeecC
Confidence            567887543 2222222  343333334444  8888888766  9999999998887665542   1222222333334


Q ss_pred             Ce-EEEEecC------CeEEEEeCCCCc
Q 013717          153 GK-IFTAHQD------CKIRVWQLTPTK  173 (437)
Q Consensus       153 ~~-l~s~~~d------g~i~iwd~~~~~  173 (437)
                      +. ++.++.+      ..+.+||..+.+
T Consensus       131 G~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         131 GRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             SCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             CceeeeccccccccccceeeeecCCCCc
Confidence            44 5555532      368899988765

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.31  E-value=0.028  Score=45.40  Aligned_cols=227  Identities=9%  Similarity=0.014  Sum_probs=110.1

Q ss_pred             CCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE
Q 013717          152 DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS  229 (437)
Q Consensus       152 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~  229 (437)
                      ++.++-.+ +|.|.+.|+.+++..+..                               .+...+....|+|  +.|+...
T Consensus        12 G~~v~f~~-~~dl~~~d~~~g~~~~Lt-------------------------------~~~~~~~~p~~SPDG~~iaf~~   59 (281)
T d1k32a2          12 GDRIIFVC-CDDLWEHDLKSGSTRKIV-------------------------------SNLGVINNARFFPDGRKIAIRV   59 (281)
T ss_dssp             TTEEEEEE-TTEEEEEETTTCCEEEEE-------------------------------CSSSEEEEEEECTTSSEEEEEE
T ss_pred             CCEEEEEe-CCcEEEEECCCCCEEEEe-------------------------------cCCCcccCEEECCCCCEEEEEE
Confidence            33454443 467888899877643321                               2556678889998  6666543


Q ss_pred             -CC-----CcEEEEECCCcceEEEee------cccccEEEEEEecCCe-EEEEeCC------CeEEEecCCCCcccceee
Q 013717          230 -WD-----KSLKIWRASDLRCLESIK------AHEDAVNAVAVSAGGT-VYTGSAD------RKIRVWAKPFNEKRHALI  290 (437)
Q Consensus       230 -~d-----g~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~-l~~~~~d------g~v~iwd~~~~~~~~~~~  290 (437)
                       .+     ..|.+++..+++......      ..........|+|+|+ ++.....      ..+...+....    .. 
T Consensus        60 ~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~----~~-  134 (281)
T d1k32a2          60 MRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI----NF-  134 (281)
T ss_dssp             EESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT----EE-
T ss_pred             eeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCc----ee-
Confidence             22     247788887776544321      1223456788999998 5544321      12333332211    11 


Q ss_pred             EEeeCccccEEEEEEccCCCEEEEEeCCC-----------cEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEE
Q 013717          291 ATLEKHKSAVNALALSDDGTVLFSGACDR-----------SILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSG  359 (437)
Q Consensus       291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~  359 (437)
                      ...  .......+.+.+++..++....+.           ...+.......    .. .............+.++.++..
T Consensus       135 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~  207 (281)
T d1k32a2         135 VPL--NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA----FK-KIVDMSTHVSSPVIVGHRIYFI  207 (281)
T ss_dssp             EEC--CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE----EE-EEECCSSCCEEEEEETTEEEEE
T ss_pred             EEe--cCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccc----ee-eccCCccccceeeeecccccee
Confidence            111  112222222332333333222211           01111111110    00 1111223334445556644443


Q ss_pred             e-CCC--cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCCCCeecc
Q 013717          360 S-ADR--TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSSPLNLQ  433 (437)
Q Consensus       360 ~-~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  433 (437)
                      . .++  .|.++|+.+.+    ...+..+. ......|+|++..    ++++.  +|.|+++|+++++....+....
T Consensus       208 ~~~~~~~~l~~~d~~g~~----~~~lt~~~-~~~~~~~SpDG~~----I~f~~--~~~l~~~d~~~g~~~~i~~~~~  273 (281)
T d1k32a2         208 TDIDGFGQIYSTDLDGKD----LRKHTSFT-DYYPRHLNTDGRR----ILFSK--GGSIYIFNPDTEKIEKIEIGDL  273 (281)
T ss_dssp             ECTTSSCEEEEEETTSCS----CEECCCCC-SSCEEEEEESSSC----EEEEE--TTEEEEECTTTCCEEECCCCCC
T ss_pred             cccccccceEEEeCCCCc----eEEeecCC-CcccccCcCCCCE----EEEEe--CCEEEEEECCCCCEEEeccCCc
Confidence            3 333  57777887654    22232222 2223468999864    44443  5789999999887655444333

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.29  E-value=0.04  Score=46.85  Aligned_cols=184  Identities=11%  Similarity=0.113  Sum_probs=102.5

Q ss_pred             EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC--C--CeEEEEEC
Q 013717          155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN--N--GLIYSVSW  230 (437)
Q Consensus       155 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~--~~l~~~~~  230 (437)
                      ++.-..+.+|.+.|+++.+..+.+.. +                            ....+..+...  +  .+++.++.
T Consensus       103 FVNDkan~RVAvIdl~~fkt~kIi~i-P----------------------------n~~~~HG~r~~~~p~T~YV~~~~e  153 (459)
T d1fwxa2         103 FMNDKANTRVARVRCDVMKCDAILEI-P----------------------------NAKGIHGLRPQKWPRSNYVFCNGE  153 (459)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEEC-S----------------------------SCCSEEEEEECCSSBCSEEEEEEC
T ss_pred             EEEcCCCceEEEEECcceeeeEEEec-C----------------------------CCCCCceeecccCCCeEEEEccCc
Confidence            56666889999999998876554322 1                            22233333332  2  45554444


Q ss_pred             C------------------CcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCC-C--------------eEE
Q 013717          231 D------------------KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSAD-R--------------KIR  276 (437)
Q Consensus       231 d------------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d-g--------------~v~  276 (437)
                      +                  +.+.++|..+++....+.. .+....++++++|+ +++.+.+ .              .+.
T Consensus       154 ~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~  232 (459)
T d1fwxa2         154 DETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIV  232 (459)
T ss_dssp             SCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEE
T ss_pred             cccccCCCCccccchhhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEE
Confidence            2                  2366789888887777653 34566788999999 4444322 1              122


Q ss_pred             Eec-----------------------CCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCcc-
Q 013717          277 VWA-----------------------KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSAN-  331 (437)
Q Consensus       277 iwd-----------------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~-  331 (437)
                      +++                       .+.. .....++.+. -......+.++|||+++++++ .+.++.|+|++.-.. 
T Consensus       233 V~n~~rie~av~~Gk~~eingV~VVD~~~~-~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~  310 (459)
T d1fwxa2         233 VFNIAEIEKAIAAGDYQELNGVKVVDGRKE-ASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV  310 (459)
T ss_dssp             EEEHHHHHHHHHHTCSEEETTEEEEECSGG---CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH
T ss_pred             EechHHhHHhhhcCCcEEeCCceeeccccc-CCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhh
Confidence            332                       2110 0001111111 223356789999999887765 489999999963211 


Q ss_pred             -------ceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCC
Q 013717          332 -------HMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRG  371 (437)
Q Consensus       332 -------~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~  371 (437)
                             ...+... ....-.-+.-.|+++  ...+---|.+|.-|++.
T Consensus       311 ~~~~~~~~~~~~~e-~elglgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         311 FYENADPRSAVVAE-PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             HHSCC-GGGGEEEC-CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             hcccCCccccEEee-cccCcCccccccCCCceEEEEeeccceEEEEecc
Confidence                   0011111 111222345556655  44455579999999974

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.28  E-value=0.061  Score=48.75  Aligned_cols=78  Identities=8%  Similarity=0.016  Sum_probs=48.8

Q ss_pred             EEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE-EEEeCCCe
Q 013717          146 KSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT-GLAVNNGL  224 (437)
Q Consensus       146 ~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~  224 (437)
                      ..+++.+++++.++.||.+.-.|.++++...........                          ....++ .-.+..+.
T Consensus       109 rg~a~~~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~--------------------------~~~~~t~~p~v~~~~  162 (571)
T d2ad6a1         109 RGLAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPK--------------------------VGSTLTQAPFVAKDT  162 (571)
T ss_dssp             CCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGG--------------------------GTCBCCSCCEEETTE
T ss_pred             CcceeeCCeEEEEeCCCcEEeeehhhhhhhccccccccc--------------------------cccceeecCeEeCCe
Confidence            346777888999999999999999999754433211100                          000000 00111244


Q ss_pred             EEEEE------CCCcEEEEECCCcceEEEee
Q 013717          225 IYSVS------WDKSLKIWRASDLRCLESIK  249 (437)
Q Consensus       225 l~~~~------~dg~i~iwd~~~~~~~~~~~  249 (437)
                      ++.+.      .+|.|+-+|+.+++.+..+.
T Consensus       163 vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         163 VLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             EEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             EEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence            55554      36889999999999988764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.19  E-value=0.048  Score=46.57  Aligned_cols=55  Identities=7%  Similarity=0.052  Sum_probs=33.3

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC-CeEEEEeCCCCcc
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD-CKIRVWQLTPTKH  174 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d-g~i~iwd~~~~~~  174 (437)
                      .+.+||..++.+........  .|.......++.+++  ++.|+.+ ..+.+||..+...
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~--~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w  110 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVT--KHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW  110 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEEC--SCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEE
T ss_pred             EEEEEECCCCcEeecCCCCC--CcccceeEEEEecCCcEEEeecCCCcceeEecCccCcc
Confidence            37799999987765544321  232333344555544  5555443 5899999887653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.15  E-value=0.042  Score=44.32  Aligned_cols=63  Identities=8%  Similarity=0.084  Sum_probs=43.6

Q ss_pred             CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEe-cC-----CeEEEEeCCCCcccc
Q 013717          108 HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAH-QD-----CKIRVWQLTPTKHHK  176 (437)
Q Consensus       108 ~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~-~d-----g~i~iwd~~~~~~~~  176 (437)
                      |+.+|-.+.+.|.+.|+.+++.+.+..      +.+.+...+|+||+  |+... .+     ..|.+++..+++...
T Consensus        12 G~~v~f~~~~dl~~~d~~~g~~~~Lt~------~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2          12 GDRIIFVCCDDLWEHDLKSGSTRKIVS------NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             TTEEEEEETTEEEEEETTTCCEEEEEC------SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCcEEEEECCCCCEEEEec------CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            778877776788999999976655433      56778899999876  55432 22     247777777776544

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.15  E-value=0.058  Score=45.86  Aligned_cols=252  Identities=11%  Similarity=0.079  Sum_probs=132.2

Q ss_pred             EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCC-----------CeeEEeecccee--e-ecCCCcEEEEEe
Q 013717          155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPN-----------SYVTVRRHKKKL--W-IEHGDAVTGLAV  220 (437)
Q Consensus       155 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~--~-~~~~~~v~~~~~  220 (437)
                      +.+|+..|.|+++-+.+++.+..+..+......-..+....           ..-.+......+  + ..|.   ..+.+
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HH---P~~S~   92 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHH---VHMSF   92 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCC---EEEEE
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCC---Ccccc
Confidence            88999999999999999987776655443222111111100           000001111111  1 0111   14444


Q ss_pred             CC-----CeEEEEE-CCCcEEEEECCCcceEEEee-cccccEEEEEEecCCe---EEEEeCCC-----------------
Q 013717          221 NN-----GLIYSVS-WDKSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGGT---VYTGSADR-----------------  273 (437)
Q Consensus       221 ~~-----~~l~~~~-~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~---l~~~~~dg-----------------  273 (437)
                      ..     +++++.. .++.|.+.|+++.++.+.+. .....+..+...++.+   ++.++.+.                 
T Consensus        93 TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~  172 (459)
T d1fwxa2          93 TEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV  172 (459)
T ss_dssp             ETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EE
T ss_pred             cCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcc
Confidence            32     6666655 67899999999999866554 2445667777765544   55555422                 


Q ss_pred             -eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC---------------cEEEEE------------
Q 013717          274 -KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR---------------SILVWD------------  325 (437)
Q Consensus       274 -~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------------~i~i~d------------  325 (437)
                       .+.++|..+..    ...... -......++++++|+++++.+.+.               .+.+++            
T Consensus       173 ~~~t~ID~~tm~----V~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         173 NVFTAVDADKWE----VAWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             EEEEEEETTTTE----EEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             eEEEEEecCCce----EEEEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence             25566665433    222222 233566789999999999876431               133333            


Q ss_pred             -----------CCCCc--cceEEe-eeecccccceEEEEeeCCE-EEEEeCCCcEEEeeCCCCC--------Cee-eeee
Q 013717          326 -----------REDSA--NHMVVT-GALRGHGKAILCLINVAGL-LMSGSADRTVRIWQRGSDG--------RFG-CLAV  381 (437)
Q Consensus       326 -----------~~~~~--~~~~~~-~~~~~~~~~i~~~~~~~~~-l~~~~~dg~i~iwd~~~~~--------~~~-~~~~  381 (437)
                                 .+...  .....+ ..-..|.   ..+++++.+ ++++..+.++.|+|++.-.        ... ....
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPVpKsPHG---V~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e  324 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPIANNPHG---CNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE  324 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEEESSCCC---EEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEEC
T ss_pred             cEEeCCceeecccccCCcceeEEEecCCCCCc---eEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEee
Confidence                       32210  000000 0001111   345556665 4555568999999986411        001 1111


Q ss_pred             ecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       382 ~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      .. ..-.-..-+|...+     ....|---|..|.-|++...
T Consensus       325 ~e-lglgPLht~fd~~g-----~aytslfids~v~kw~~~~~  360 (459)
T d1fwxa2         325 PE-LGLGPLHTAFDGRG-----NAYTSLFLDSQVVKWNIEDA  360 (459)
T ss_dssp             CB-CCSCEEEEEECTTS-----EEEEEETTTTEEEEEEHHHH
T ss_pred             cc-cCcCccccccCCCc-----eEEEEeeccceEEEEecchh
Confidence            11 12233445676655     24566678999999998643

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.04  E-value=0.053  Score=43.59  Aligned_cols=248  Identities=8%  Similarity=0.105  Sum_probs=147.1

Q ss_pred             eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCC
Q 013717          118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNS  196 (437)
Q Consensus       118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (437)
                      .|.|-|+..+.....+.+        .-.+...+|.. +++--...++.++|+++.+.++...                 
T Consensus        46 ~VvIidl~n~~~~~Rrpi--------~AdsAIMhP~~~IiALrag~~LQiFnletK~klks~~-----------------  100 (327)
T d1utca2          46 QVVIIDMNDPSNPIRRPI--------SADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHT-----------------  100 (327)
T ss_dssp             EEEEEETTSTTSCEEEEC--------CCSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEE-----------------
T ss_pred             eEEEEECCCCCcceeccc--------chhhhhcCCCCcEEEEecCCeEEEEehhHhhhhceEE-----------------
Confidence            888899987432222221        11123334554 4444446789999999887665543                 


Q ss_pred             eeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCc-ceEEEeecc----cccEEEEEEecCCe-E-EE
Q 013717          197 YVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDL-RCLESIKAH----EDAVNAVAVSAGGT-V-YT  268 (437)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~----~~~v~~~~~~~~~~-l-~~  268 (437)
                                    ...+|.--.|-. +.|+..+. ..|+-|+++.. ++...+..|    ...|..-..+++.+ + ++
T Consensus       101 --------------~~e~VvfWkWis~~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~  165 (327)
T d1utca2         101 --------------MTDDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLT  165 (327)
T ss_dssp             --------------CSSCCCEEEESSSSEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEE
T ss_pred             --------------cCCCcEEEEecCCCEEEEEcC-CceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEE
Confidence                          345666666755 66666654 57999999543 455555433    34677777788887 3 33


Q ss_pred             Ee------CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC---CEEEEE---eCCCcEEEEECCCCcc-ceEE
Q 013717          269 GS------ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG---TVLFSG---ACDRSILVWDREDSAN-HMVV  335 (437)
Q Consensus       269 ~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~---~~dg~i~i~d~~~~~~-~~~~  335 (437)
                      |=      -.|.+.+|..+.+     .-+.+++|.+....+.+.-+.   +.++.+   ...++++|.++..... ...+
T Consensus       166 GI~~~~~~i~G~mQLYS~er~-----~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f  240 (327)
T d1utca2         166 GISAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF  240 (327)
T ss_dssp             EEEEETTEEEEEEEEEETTTT-----EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCC
T ss_pred             eEecCCCceeEEEEEEEeccC-----cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCC
Confidence            31      2477889977543     455667776655555443221   233332   2347899999876321 1111


Q ss_pred             ----eee---ecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEE
Q 013717          336 ----TGA---LRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSV  406 (437)
Q Consensus       336 ----~~~---~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l  406 (437)
                          ...   ......-..++..+..  .+..-+.-|.|++||++++.   ++..-+-...+|-.-+-......     +
T Consensus       241 ~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt---~i~~nRIs~~~iF~~a~~~~~~G-----i  312 (327)
T d1utca2         241 PKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT---CIYMNRISGETIFVTAPHEATAG-----I  312 (327)
T ss_dssp             CCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEEETTTTE-----E
T ss_pred             cceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEccccc---EEEEeecCCCceEEeccCCCCce-----E
Confidence                100   1112233455666554  88888999999999999988   67666666677765555554432     6


Q ss_pred             EEecCCCcEEEE
Q 013717          407 FSGSLDGEIRAW  418 (437)
Q Consensus       407 ~s~~~dg~i~iw  418 (437)
                      ++...+|.|..-
T Consensus       313 ~~VNr~GqVl~v  324 (327)
T d1utca2         313 IGVNRKGQVLSV  324 (327)
T ss_dssp             EEEETTSEEEEE
T ss_pred             EEECCCCeEEEE
Confidence            666678877543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.92  E-value=0.14  Score=46.50  Aligned_cols=98  Identities=12%  Similarity=0.128  Sum_probs=61.7

Q ss_pred             CcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecC----CCCCeeEEEE
Q 013717          319 RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEG----HTKPVKSLTA  394 (437)
Q Consensus       319 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----h~~~v~~l~~  394 (437)
                      |.|.-||+.+++.............+.   +...+.+++.|+.||.++-+|.++++   .+..+.-    +..++   .+
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~---lsTagglVF~G~~Dg~l~A~Da~TGe---~LW~~~~~~~~~a~P~---tY  523 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGT---MATAGDLVFYGTLDGYLKARDSDTGD---LLWKFKIPSGAIGYPM---TY  523 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBC---EEETTTEEEEECTTSEEEEEETTTCC---EEEEEECSSCCCSCCE---EE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccce---eEecCCEEEEECCCCeEEEEECCCCc---EeeEEECCCCcccCCe---EE
Confidence            567788888877665544332222222   23457788889999999999999998   4444432    23343   44


Q ss_pred             EccCCCCceEEEEEec-----------------------------------CCCcEEEEeeccCCCCCCC
Q 013717          395 VTEEGQNGVVSVFSGS-----------------------------------LDGEIRAWQVSVSCPNSSP  429 (437)
Q Consensus       395 ~~~~~~~~~~~l~s~~-----------------------------------~dg~i~iw~~~~~~~~~~~  429 (437)
                      ..++.    +|++...                                   ..|.|.++.|....+...|
T Consensus       524 ~~dGk----QYvav~~G~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~vf~l~g~~~~~~~  589 (596)
T d1w6sa_         524 THKGT----QYVAIYYGVGGWPGVGLVFDLADPTAGLGAVGAFKKLANYTQMGGGVVVFSLDGKGPYDDP  589 (596)
T ss_dssp             EETTE----EEEEEEECCCTTTTHHHHHTCCCTTCGGGHHHHTTTGGGTCCCCCEEEEEEETTCCTTSST
T ss_pred             EECCE----EEEEEEecCCccccccccccccCccccccccccccccccccCCCCEEEEEEeCCCCCCCCC
Confidence            55664    3665432                                   1367999999987665543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.89  E-value=0.15  Score=46.19  Aligned_cols=118  Identities=12%  Similarity=0.072  Sum_probs=64.1

Q ss_pred             CCEEEEEecC-eEEEEeCCCCceeeeeccc--cCCCC----cccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccc
Q 013717          108 HNFLYAASSH-EINVYDRTGTTWTSINTFN--DNDSS----SGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTT  180 (437)
Q Consensus       108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~--~~~~h----~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  180 (437)
                      +..|+.++.+ .|.-+|.++++..=.....  ....+    ...-..+.+..+.++.++.|+.+.-.|..+++.......
T Consensus        77 ~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~~g~l~alda~tG~~~W~~~~  156 (573)
T d1kb0a2          77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNT  156 (573)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEET
T ss_pred             CCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEecccceeeeccccccceecccC
Confidence            5566666666 8888888886322111100  00000    111134556677888889999999999999876543322


Q ss_pred             cCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEE------CCCcEEEEECCCcceEEEee
Q 013717          181 LPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVS------WDKSLKIWRASDLRCLESIK  249 (437)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~  249 (437)
                      .........                    .-..+    .+..+.+++++      ..|.|+.+|.++|+.+..+.
T Consensus       157 ~~~~~~~~~--------------------~~~~p----~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  207 (573)
T d1kb0a2         157 FEGQKGSLT--------------------ITGAP----RVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF  207 (573)
T ss_dssp             TTTCCSSCB--------------------CCSCC----EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             ccCCcceEE--------------------eecce----EEEeccEEEeeccccccccceEEEEecCCccceeeee
Confidence            111000000                    00000    01124444443      24789999999999988764

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.57  E-value=0.25  Score=44.47  Aligned_cols=71  Identities=10%  Similarity=0.093  Sum_probs=41.1

Q ss_pred             CCEEEEEecC-eEEEEeCCCCceeeeec--cccC----CCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccc
Q 013717          108 HNFLYAASSH-EINVYDRTGTTWTSINT--FNDN----DSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLK  178 (437)
Q Consensus       108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~--~~~~----~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  178 (437)
                      +..|+.++.+ .|.-.|.++++..=...  ....    ......-..++...+.++.+..|+.|.-.|..+++.....
T Consensus        66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~l~Alda~tG~~~w~~  143 (560)
T d1kv9a2          66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (560)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCCCEEEEEECCCCcEEecc
Confidence            4555556666 78778888863221110  0000    0011112234455677899999999999999988765443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.41  E-value=0.26  Score=44.60  Aligned_cols=82  Identities=12%  Similarity=0.016  Sum_probs=51.1

Q ss_pred             CCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCC-CeeEEEEEc
Q 013717          318 DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTK-PVKSLTAVT  396 (437)
Q Consensus       318 dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~v~~l~~~~  396 (437)
                      .|.|.-+|+.+++.............+   .++..+.++++|+.||.++-||.++++   .+..++-... .-.-+.+..
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g---~lstagglVF~Gt~dg~l~A~Da~TGe---~LW~~~~~~~~~~~P~ty~~  538 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAG---VLATAGNLVFTGTGDGYFKAFDAKSGK---ELWKFQTGSGIVSPPITWEQ  538 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSC---CEEETTTEEEEECTTSEEEEEETTTCC---EEEEEECSSCCCSCCEEEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccc---eeEEcCCeEEEeCCCCeEEEEECCCCc---EeEEEECCCCccccCEEEEE
Confidence            467888999988876665433222111   244567788899999999999999999   4444432111 111145666


Q ss_pred             cCCCCceEEEEEe
Q 013717          397 EEGQNGVVSVFSG  409 (437)
Q Consensus       397 ~~~~~~~~~l~s~  409 (437)
                      ++.    +|++..
T Consensus       539 ~G~----qYv~i~  547 (582)
T d1flga_         539 DGE----QYLGVT  547 (582)
T ss_dssp             TTE----EEEEEE
T ss_pred             CCE----EEEEEE
Confidence            664    365543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.29  E-value=0.19  Score=40.12  Aligned_cols=196  Identities=15%  Similarity=0.109  Sum_probs=115.2

Q ss_pred             CccCCeEEEEee--CCEEEEEecC--eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe--CCeEE-EEecCCeEEEEe
Q 013717           96 GHKLPIGCIAVH--HNFLYAASSH--EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC--DGKIF-TAHQDCKIRVWQ  168 (437)
Q Consensus        96 ~h~~~V~~l~~~--~~~l~s~~~d--~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~~~dg~i~iwd  168 (437)
                      .+...+.+|+|+  .+.|+-....  .|+..++++...+.+..     .....+.+|++.  .+.|+ +-...+.|.+.+
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~-----~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~  107 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR-----QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAK  107 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC-----TTCCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEE-----eccccccEEEEeccCCeEEEeccCCCEEEEEe
Confidence            444568889998  6666666544  89988988753333322     123467888886  55554 545677899999


Q ss_pred             CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECC-C--cEEEEECCCcc
Q 013717          169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWD-K--SLKIWRASDLR  243 (437)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d-g--~i~iwd~~~~~  243 (437)
                      ++.........                              ........++++|  .+++..... +  .|.--++....
T Consensus       108 ~dg~~~~~l~~------------------------------~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~  157 (263)
T d1npea_         108 MDGTQRRVLFD------------------------------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN  157 (263)
T ss_dssp             TTSCSCEEEEC------------------------------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred             cCCceEEEEec------------------------------ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC
Confidence            87543211111                              1234577888887  555544332 2  34444554433


Q ss_pred             eEEEeecccccEEEEEEecCCe-E-EEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcE
Q 013717          244 CLESIKAHEDAVNAVAVSAGGT-V-YTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSI  321 (437)
Q Consensus       244 ~~~~~~~~~~~v~~~~~~~~~~-l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  321 (437)
                      ........-.....|++.+.+. | ++-...+.|...|+....    ....+.+. ....+|++. ++.+.++-...+.|
T Consensus       158 ~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~----~~~v~~~~-~~P~~lav~-~~~lYwtd~~~~~I  231 (263)
T d1npea_         158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG----RRKVLEGL-QYPFAVTSY-GKNLYYTDWKTNSV  231 (263)
T ss_dssp             CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE----EEEEEECC-CSEEEEEEE-TTEEEEEETTTTEE
T ss_pred             ceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCC----eEEEECCC-CCcEEEEEE-CCEEEEEECCCCEE
Confidence            3333333335678999987665 5 444567889988876322    11122322 234577775 34344444467889


Q ss_pred             EEEECCCCccc
Q 013717          322 LVWDREDSANH  332 (437)
Q Consensus       322 ~i~d~~~~~~~  332 (437)
                      ...|..+++..
T Consensus       232 ~~~~~~~g~~~  242 (263)
T d1npea_         232 IAMDLAISKEM  242 (263)
T ss_dssp             EEEETTTTEEE
T ss_pred             EEEECCCCccc
Confidence            88998876543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.22  Score=39.80  Aligned_cols=200  Identities=11%  Similarity=-0.015  Sum_probs=112.7

Q ss_pred             CCCcEEEEEeCC--CeEEEEE-CCCcEEEEECCCcc----eEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCC
Q 013717          211 HGDAVTGLAVNN--GLIYSVS-WDKSLKIWRASDLR----CLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKP  281 (437)
Q Consensus       211 ~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~  281 (437)
                      ....+.++.++.  +.++-.. .++.|.-.++....    ....+......+..+++.+.+.  .++-...+.|.+.++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            334567888876  6666554 45666666654321    1122222334567788876554  4555667889999886


Q ss_pred             CCcccceeeEEeeCccccEEEEEEccCCCEEEEEe--CCCcEEEEECCCCccceEEeeeecccccceEEEEee--CC-EE
Q 013717          282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA--CDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AG-LL  356 (437)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l  356 (437)
                      ...    ..............++++|...+|....  ..+.|.-.++..... ..+.   ...-.....++.+  .+ +.
T Consensus       108 g~~----~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~-~~l~---~~~~~~p~gl~iD~~~~~lY  179 (266)
T d1ijqa1         108 GVK----RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLV---TENIQWPNGITLDLLSGRLY  179 (266)
T ss_dssp             SSS----EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEE---CSSCSCEEEEEEETTTTEEE
T ss_pred             Cce----EEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce-eccc---ccccceeeEEEeeccccEEE
Confidence            433    2223334456788999998655555443  345677777755432 2221   1122334555555  44 44


Q ss_pred             EEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717          357 MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP  425 (437)
Q Consensus       357 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  425 (437)
                      .+-...+.|...++..... ..+...........+|++..+      .++++-..++.|...+..++..
T Consensus       180 w~d~~~~~I~~~~~dG~~~-~~~~~~~~~~~~p~~lav~~~------~ly~td~~~~~I~~~~~~~g~~  241 (266)
T d1ijqa1         180 WVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED------KVFWTDIINEAIFSANRLTGSD  241 (266)
T ss_dssp             EEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEETT------EEEEEETTTTEEEEEETTTCCC
T ss_pred             EecCCcCEEEEEECCCCCE-EEEEeCCCcccccEEEEEECC------EEEEEECCCCeEEEEECCCCcc
Confidence            4446678899999875442 222222333345667887743      2666666778887777666543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.95  E-value=0.54  Score=42.31  Aligned_cols=94  Identities=16%  Similarity=0.166  Sum_probs=55.6

Q ss_pred             CcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecC----CCCCeeEEEE
Q 013717          319 RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEG----HTKPVKSLTA  394 (437)
Q Consensus       319 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----h~~~v~~l~~  394 (437)
                      |.+.-||+.+++.............   -.++..+.++++|+.||.++.||.++++   .+..+.-    +..+   +.+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~g---g~lstagglVF~G~~dg~l~A~Da~TGe---~LW~~~~~~~~~~~P---~ty  527 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNG---GTLTTAGNVVFQGTADGRLVAYHAATGE---KLWEAPTGTGVVAAP---STY  527 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCC---CEEEETTTEEEEECTTSEEEEEETTTCC---EEEEEECSSCCCSCC---EEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCC---ceEEEcCCEEEEECCCCeEEEEECCCCc---EeEEEECCCCccccC---EEE
Confidence            3466677777665554432211111   2345567789999999999999999999   4444332    2223   445


Q ss_pred             EccCCCCceEEEEEecC----------------CCcEEEEeeccCCC
Q 013717          395 VTEEGQNGVVSVFSGSL----------------DGEIRAWQVSVSCP  425 (437)
Q Consensus       395 ~~~~~~~~~~~l~s~~~----------------dg~i~iw~~~~~~~  425 (437)
                      ..++.    +||+..+.                .+.|.+|.|.....
T Consensus       528 ~~~Gk----QYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F~l~g~~~  570 (573)
T d1kb0a2         528 MVDGR----QYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKAR  570 (573)
T ss_dssp             EETTE----EEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCBCC
T ss_pred             EECCE----EEEEEEeCCCcccccccccccCCCCCEEEEEEeCCcCC
Confidence            55654    35544332                23688888876543

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=95.69  E-value=0.38  Score=38.53  Aligned_cols=224  Identities=14%  Similarity=0.122  Sum_probs=113.0

Q ss_pred             CcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe
Q 013717          141 SSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV  220 (437)
Q Consensus       141 h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  220 (437)
                      ....|..|+--....+.-. ||.|..|-.+...++....                              .....|..+..
T Consensus        24 ~~~~i~~va~G~~h~~al~-dG~v~~wG~N~~GQlG~~~------------------------------~~~~~v~~v~~   72 (273)
T d1jtdb_          24 AQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA------------------------------ATQSGVDAIAA   72 (273)
T ss_dssp             GSSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCG------------------------------GGGSCCCEEEE
T ss_pred             CCCCcEEEEccCCEEEEEE-CCEEEEEeCCCCCceeeee------------------------------cccccceEEec
Confidence            3456888887666644444 8999999776543222111                              12234455555


Q ss_pred             CCCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccE
Q 013717          221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAV  300 (437)
Q Consensus       221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i  300 (437)
                      ...+.+.- .||.+..|.....-...........+..++......++  -.|+.+..|.-.......    ........|
T Consensus        73 G~~~~~al-~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~~~~~~--~~dg~v~~~g~~~~~~~~----~~~~~~~~v  145 (273)
T d1jtdb_          73 GNYHSLAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYA--LKDGKVIAWGDDSDGQTT----VPAEAQSGV  145 (273)
T ss_dssp             CSSEEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEETTEEEE--EETTEEEEEECCTTSTTS----CCGGGGSSE
T ss_pred             CCCceeee-eeeeeeccCCCcceeeccccccccceeEEeeecccccc--cccccceecccCCCCcee----eeccCCceE
Confidence            44333333 48999999764321111111122334455443222222  248899999533221111    111122344


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeee
Q 013717          301 NALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLA  380 (437)
Q Consensus       301 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  380 (437)
                      ..++-.   .+.+....++.++.|-.........    .......|..++......+.-. ||.|+-|=.....+   +.
T Consensus       146 ~~~~~~---~~~~~~~~~g~~~~~G~~~~g~~~~----~~~~~~~v~~Is~G~~h~~~l~-dG~v~~WG~n~~Gq---l~  214 (273)
T d1jtdb_         146 TALDGG---VYTALAVKNGGVIAWGDNYFGQTTV----PAEAQSGVDDVAGGIFHSLALK-DGKVIAWGDNRYKQ---TT  214 (273)
T ss_dssp             EEEEEC---SSEEEEEETTEEEEEECCTTSTTSC----CGGGSSSEEEEEECSSEEEEEE-TTEEEEEECCTTST---TC
T ss_pred             EEEecc---ceeeeeecccceeEeecccCCcccc----cccccCCccceeccceeeEEEe-cCcEEEcCCCCCCc---cC
Confidence            444432   2233344578899997654332211    1123456777776655433333 89999996544331   11


Q ss_pred             eecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717          381 VLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS  421 (437)
Q Consensus       381 ~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  421 (437)
                      ........|..|+.....      .++.  .||.|..|--.
T Consensus       215 ~~~~~~~~v~~I~~G~~~------~~~l--~~g~v~~WG~~  247 (273)
T d1jtdb_         215 VPTEALSGVSAIASGEWY------SLAL--KNGKVIAWGSS  247 (273)
T ss_dssp             CCGGGGSSCCEEEECSSC------EEEE--ETTEEEEESTT
T ss_pred             CCccCCCCcEEEEeCcce------EEEE--ECCEEEEECCC
Confidence            112223457777654432      3433  38999999543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.58  E-value=0.61  Score=40.16  Aligned_cols=206  Identities=12%  Similarity=0.114  Sum_probs=105.2

Q ss_pred             EEEEEeCC--CeEE-EEECCC----cEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCC--------------
Q 013717          215 VTGLAVNN--GLIY-SVSWDK----SLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSAD--------------  272 (437)
Q Consensus       215 v~~~~~~~--~~l~-~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d--------------  272 (437)
                      +..++++|  ++++ +-+.+|    .|+++|+.+++.+...- .......++|.+|+. |+....+              
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            44556666  4444 333343    59999999998765321 112235688999998 5544322              


Q ss_pred             --CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC---CCc--EEEEECCCCccce----EEeeeecc
Q 013717          273 --RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC---DRS--ILVWDREDSANHM----VVTGALRG  341 (437)
Q Consensus       273 --g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~--i~i~d~~~~~~~~----~~~~~~~~  341 (437)
                        ..|..+.+.+....-..+.........+..+..++++++++....   ++.  +.+.|+.......    ........
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  285 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN  285 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred             CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecc
Confidence              257777776554443344332223345677888999998765332   333  4444544321110    01111122


Q ss_pred             cccceEEEEeeCCEEEE-EeC---CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCC--cE
Q 013717          342 HGKAILCLINVAGLLMS-GSA---DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDG--EI  415 (437)
Q Consensus       342 ~~~~i~~~~~~~~~l~~-~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg--~i  415 (437)
                      ......-+...++.+.. ...   ++.|...++...........+..+...+..-.+...++    .+++..-.|+  .|
T Consensus       286 ~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~----~lvl~~~~~~~~~l  361 (430)
T d1qfma1         286 FEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN----FLVLCYLHDVKNTL  361 (430)
T ss_dssp             SSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTT----EEEEEEEETTEEEE
T ss_pred             cccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECC----EEEEEEEcCCEeEE
Confidence            22333344455663333 222   35666667665442111222333444454434443332    2445555665  47


Q ss_pred             EEEeeccCCC
Q 013717          416 RAWQVSVSCP  425 (437)
Q Consensus       416 ~iw~~~~~~~  425 (437)
                      +++++..++.
T Consensus       362 ~v~~~~~~~~  371 (430)
T d1qfma1         362 QLHDLATGAL  371 (430)
T ss_dssp             EEEETTTCCE
T ss_pred             EEEECCCCcE
Confidence            7888876653

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.57  E-value=0.79  Score=41.36  Aligned_cols=70  Identities=10%  Similarity=-0.049  Sum_probs=43.6

Q ss_pred             eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE-EEEeCCCeEEEEEC--
Q 013717          154 KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT-GLAVNNGLIYSVSW--  230 (437)
Q Consensus       154 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~l~~~~~--  230 (437)
                      .++.++.|+.|.-.|.++++...........                          ....++ .-.+..+.++.+..  
T Consensus       123 ~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~--------------------------~~~~~t~~P~v~~~~vivg~~~~  176 (596)
T d1w6sa_         123 LILKTQLDGNVAALNAETGETVWKVENSDIK--------------------------VGSTLTIAPYVVKDKVIIGSSGA  176 (596)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCCGG--------------------------GTCBCCSCCEEETTEEEECCBCG
T ss_pred             EEEEEeCCCCeEeeccccCceeccccccccc--------------------------cccccccCCcEECCeEEEeeccc
Confidence            3888999999999999998765543211100                          000010 01112255565543  


Q ss_pred             ----CCcEEEEECCCcceEEEee
Q 013717          231 ----DKSLKIWRASDLRCLESIK  249 (437)
Q Consensus       231 ----dg~i~iwd~~~~~~~~~~~  249 (437)
                          .|.|+-+|+.+|+.+..+.
T Consensus       177 e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         177 ELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             GGTCCCEEEEEETTTCCEEEEEE
T ss_pred             cccccCceEEEECCCCcEEEEee
Confidence                4899999999999998764

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.61  Score=37.29  Aligned_cols=72  Identities=14%  Similarity=0.260  Sum_probs=37.4

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCC-----cEEEeeCCCCCCee
Q 013717          308 DGTVLFSGACD-----RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADR-----TVRIWQRGSDGRFG  377 (437)
Q Consensus       308 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~  377 (437)
                      +++.++.|+.+     .....+|..+.+.  ........-.....+....+++++.|+.++     .|.+||+.+.. +.
T Consensus       195 ~~~i~i~GG~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~-W~  271 (288)
T d1zgka1         195 HNCIYAAGGYDGQDQLNSVERYDVETETW--TFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT-WS  271 (288)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEE--EECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE-EE
T ss_pred             eeeEEEecCccccccccceeeeeecceee--ecccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCE-EE
Confidence            35555555443     3567777765432  121111111122233344566777776654     37889998754 66


Q ss_pred             eeeee
Q 013717          378 CLAVL  382 (437)
Q Consensus       378 ~~~~~  382 (437)
                      .+..+
T Consensus       272 ~~~~~  276 (288)
T d1zgka1         272 EVTRM  276 (288)
T ss_dssp             EEEEC
T ss_pred             ECCCC
Confidence            66554

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.75  E-value=1.6  Score=36.49  Aligned_cols=134  Identities=12%  Similarity=0.039  Sum_probs=83.7

Q ss_pred             CeEEEEee--CCEEEEEecCeEEEEeCCCC---------ceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEe
Q 013717          100 PIGCIAVH--HNFLYAASSHEINVYDRTGT---------TWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQ  168 (437)
Q Consensus       100 ~V~~l~~~--~~~l~s~~~d~v~vwd~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd  168 (437)
                      ...-++.+  ..+++.|+.+.++|-..+.-         .......     ..-..|..++|+.+.++.. .++.+..++
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~-----~~ip~v~~vafs~d~l~v~-~~~~l~~~~  111 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWE-----KEIPDVIFVCFHGDQVLVS-TRNALYSLD  111 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEE-----EECTTEEEEEEETTEEEEE-ESSEEEEEE
T ss_pred             ccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceec-----cCCCCeEEEEeeCCEEEEE-eCCCEEEEE
Confidence            34567777  56788778777778775330         0000000     1123588999998875554 455677777


Q ss_pred             CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEe
Q 013717          169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESI  248 (437)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  248 (437)
                      ...-.......                              .-..++..+.++|..++....+|.+.++++..++.....
T Consensus       112 ~~~l~~~~~~~------------------------------~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~  161 (381)
T d1xipa_         112 LEELSEFRTVT------------------------------SFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLA  161 (381)
T ss_dssp             SSSTTCEEEEE------------------------------ECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             eeccccccccc------------------------------cccccccceecCCceeEEEecCCCEEEEEeccCcccccc
Confidence            76533211111                              134567888889988888999999999999888643322


Q ss_pred             e-----cccccEEEEEEecCCe-EEEE
Q 013717          249 K-----AHEDAVNAVAVSAGGT-VYTG  269 (437)
Q Consensus       249 ~-----~~~~~v~~~~~~~~~~-l~~~  269 (437)
                      .     .-.+.+.++.|++.|+ ++++
T Consensus       162 ~~v~~~~~~~~~~~v~ws~kgkq~v~~  188 (381)
T d1xipa_         162 QNVTSFDVTNSQLAVLLKDRSFQSFAW  188 (381)
T ss_dssp             ESEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred             CCcceEEecCCceEEEEeCCcEEEEEe
Confidence            1     1235677778877777 5555

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.30  E-value=1.8  Score=35.72  Aligned_cols=193  Identities=12%  Similarity=0.127  Sum_probs=111.9

Q ss_pred             CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEec----CC--e-EEEEeC--C--CeEEEecCCCCcccceeeE
Q 013717          223 GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA----GG--T-VYTGSA--D--RKIRVWAKPFNEKRHALIA  291 (437)
Q Consensus       223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~----~~--~-l~~~~~--d--g~v~iwd~~~~~~~~~~~~  291 (437)
                      .+++....++-|++||+. |+.++.+.  .+.++.+..-.    ++  . +++++.  +  ..|.+|.+.....   .+.
T Consensus        41 SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~---~l~  114 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG---TLQ  114 (353)
T ss_dssp             CEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT---EEE
T ss_pred             cEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc---ccc
Confidence            566666777779999984 77777764  35666665432    22  2 566653  2  3677887642221   122


Q ss_pred             EeeC-------ccccEEEEEE--ccC-CC-EEEEEeCCCcEEEEECCC---CccceEEeeeecccccceEEEEeeCC--E
Q 013717          292 TLEK-------HKSAVNALAL--SDD-GT-VLFSGACDRSILVWDRED---SANHMVVTGALRGHGKAILCLINVAG--L  355 (437)
Q Consensus       292 ~~~~-------~~~~i~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~--~  355 (437)
                      .+..       ....+..+++  ++. |. ++++...+|.+..|.+..   +.........+. -...+-.+.++..  .
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~  193 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGS  193 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTE
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCc
Confidence            2211       1123566666  654 44 567777899998887743   222233333333 2345566666654  8


Q ss_pred             EEEEeCCCcEEEeeCCCCC--CeeeeeeecC--CCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          356 LMSGSADRTVRIWQRGSDG--RFGCLAVLEG--HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       356 l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      |+.+-++..|..++.....  ....+....+  ....+..|+.....+ ..+.+|+|.-.|++..+||...+
T Consensus       194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~-~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAAD-GKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGG-GCEEEEEEEGGGTEEEEEESSTT
T ss_pred             EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCC-CCeEEEEEcCCCCeEEEEecCCC
Confidence            8888887766666654222  1122322222  356788888775432 12356777767889999998764

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.18  E-value=1.2  Score=33.42  Aligned_cols=182  Identities=9%  Similarity=0.096  Sum_probs=111.1

Q ss_pred             ccccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeee
Q 013717           57 QSNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSIN  133 (437)
Q Consensus        57 ~~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~  133 (437)
                      .+...+.|.|-..-+..+-.-+.+..-++....+..+.- ...-.|.++++. .+..++|+.. .+.+|=++.+..+.+.
T Consensus        61 ~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~  140 (313)
T d2hu7a1          61 DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA  140 (313)
T ss_dssp             EECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE
T ss_pred             CCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCceEEEEEeeecCceEEEecccCCceEEEEEeCCceeeec
Confidence            344456666655566666666777777776555555554 334789999999 7788888877 9999999998888877


Q ss_pred             ccccCC----CCcccEEEEEEe-CCe--EEEEec-CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccc
Q 013717          134 TFNDND----SSSGSVKSVTFC-DGK--IFTAHQ-DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKK  205 (437)
Q Consensus       134 ~~~~~~----~h~~~v~~l~~~-~~~--l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (437)
                      .+..+.    -...-|..+.+. ++.  +.++.. .|.+++++...+.                                
T Consensus       141 ~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~tpkeGS--------------------------------  188 (313)
T d2hu7a1         141 RLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGS--------------------------------  188 (313)
T ss_dssp             EESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEECCSSEE--------------------------------
T ss_pred             cCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEecCCCCc--------------------------------
Confidence            764331    122344555554 333  666665 7888888766543                                


Q ss_pred             eeeecCCCcEEEEEeCC-CeEEEEECC---CcEEEEECCCcceEEE-ee------cccccEEEEEEecCCe-EEEEeCCC
Q 013717          206 KLWIEHGDAVTGLAVNN-GLIYSVSWD---KSLKIWRASDLRCLES-IK------AHEDAVNAVAVSAGGT-VYTGSADR  273 (437)
Q Consensus       206 ~~~~~~~~~v~~~~~~~-~~l~~~~~d---g~i~iwd~~~~~~~~~-~~------~~~~~v~~~~~~~~~~-l~~~~~dg  273 (437)
                               ++..-..+ +.++++.+.   ....-+|++.++.... +.      -..-.|+-+-+.|+++ ++.+-.||
T Consensus       189 ---------~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG  259 (313)
T d2hu7a1         189 ---------FSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREG  259 (313)
T ss_dssp             ---------EEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETT
T ss_pred             ---------ccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCC
Confidence                     33333333 333333221   1222446666543221 11      1123566677999998 58888999


Q ss_pred             eEEEec
Q 013717          274 KIRVWA  279 (437)
Q Consensus       274 ~v~iwd  279 (437)
                      .=++|.
T Consensus       260 ~s~lF~  265 (313)
T d2hu7a1         260 RSAVFI  265 (313)
T ss_dssp             EEEEEE
T ss_pred             chheee
Confidence            999985

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.57  E-value=3.4  Score=36.94  Aligned_cols=70  Identities=10%  Similarity=0.055  Sum_probs=42.0

Q ss_pred             eCCEEEEEecC-eEEEEeCCCCceeeeeccccC---CCC-cccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccc
Q 013717          107 HHNFLYAASSH-EINVYDRTGTTWTSINTFNDN---DSS-SGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHK  176 (437)
Q Consensus       107 ~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~---~~h-~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~  176 (437)
                      .+..|+.++.+ .|.-.|.++++..=.......   ... ...-..+++.++.++.++.|+.+.-.|..+++...
T Consensus        67 ~~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t~~~~l~alda~tG~~~W  141 (582)
T d1flga_          67 SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVW  141 (582)
T ss_dssp             ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEE
T ss_pred             ECCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCCceEEecCCCeEEEecccccceee
Confidence            35566666666 888888887633211111000   000 11113456667888889999999999999887543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.35  E-value=2.4  Score=34.81  Aligned_cols=161  Identities=9%  Similarity=0.093  Sum_probs=85.5

Q ss_pred             EEEEEEecCCe-EEEEe------------CCCeEEEecCCCCcccceeeEEeeCc----cccEEEEEE--ccCCC-EEEE
Q 013717          255 VNAVAVSAGGT-VYTGS------------ADRKIRVWAKPFNEKRHALIATLEKH----KSAVNALAL--SDDGT-VLFS  314 (437)
Q Consensus       255 v~~~~~~~~~~-l~~~~------------~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~i~~~~~--~~~~~-~l~~  314 (437)
                      ...|+..|+|. +++++            ..|.|.++|+.........+......    .-....+.+  .++|+ +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            33566677777 33332            14889999987554333322222111    112344443  45665 4444


Q ss_pred             Ee---CCCcEEEEECCCCccceEEeeeeccc-ccceEEEEee--CCEEEEEe--C-------------CCcEEEeeCCCC
Q 013717          315 GA---CDRSILVWDREDSANHMVVTGALRGH-GKAILCLINV--AGLLMSGS--A-------------DRTVRIWQRGSD  373 (437)
Q Consensus       315 ~~---~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~i~~~~~~--~~~l~~~~--~-------------dg~i~iwd~~~~  373 (437)
                      ..   ...+|-+|++................ ......+...  +.+++|-.  .             -+.-.+|....+
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            43   35678888886554444444333221 1223444443  33555521  0             122344444433


Q ss_pred             CCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717          374 GRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS  423 (437)
Q Consensus       374 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  423 (437)
                      +    .......-..-+.|+++|+++.    ++++-...++|+.|+++..
T Consensus       197 ~----~~~~~~~l~~pNGI~~s~d~~~----lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         197 D----VRVVAEGFDFANGINISPDGKY----VYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             C----EEEEEEEESSEEEEEECTTSSE----EEEEEGGGTEEEEEEECTT
T ss_pred             c----eEEEcCCCCccceeEECCCCCE----EEEEeCCCCeEEEEEeCCC
Confidence            2    1222223346889999998864    7788888899999999754

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.94  E-value=3.7  Score=34.15  Aligned_cols=69  Identities=9%  Similarity=0.112  Sum_probs=51.3

Q ss_pred             CeEEEEeeCCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCc
Q 013717          100 PIGCIAVHHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTK  173 (437)
Q Consensus       100 ~V~~l~~~~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~  173 (437)
                      .|..++|+++.|+....+.+..++...-  ......   ..-..++..+.+.++.++....+|.+.++++..++
T Consensus        88 ~v~~vafs~d~l~v~~~~~l~~~~~~~l--~~~~~~---~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~  156 (381)
T d1xipa_          88 DVIFVCFHGDQVLVSTRNALYSLDLEEL--SEFRTV---TSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKS  156 (381)
T ss_dssp             TEEEEEEETTEEEEEESSEEEEEESSST--TCEEEE---EECSSCEEEEEECSSEEEEEETTSEEEEEETTTCC
T ss_pred             CeEEEEeeCCEEEEEeCCCEEEEEeecc--cccccc---ccccccccceecCCceeEEEecCCCEEEEEeccCc
Confidence            5899999988888877667777887662  112111   12345788999999998888889999999998775

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.49  E-value=5.3  Score=31.27  Aligned_cols=57  Identities=9%  Similarity=0.148  Sum_probs=29.6

Q ss_pred             eeEEecCCCc-ceeeeec-CccCCeEEEEeeCCEEEEEec----------CeEEEEeCCCCceeeeecc
Q 013717           79 TINFSSASHL-CINSVQL-GHKLPIGCIAVHHNFLYAASS----------HEINVYDRTGTTWTSINTF  135 (437)
Q Consensus        79 ~i~~~~~~~~-~~~~~~~-~h~~~V~~l~~~~~~l~s~~~----------d~v~vwd~~~~~~~~~~~~  135 (437)
                      .+.+||.... +..+..+ .....-.++.+.+..++.|+.          +.+.+||..+..+..+..+
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~   88 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM   88 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCC
T ss_pred             eEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccc
Confidence            4556665432 3333333 222222233333555555552          1678899988777776654

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=86.23  E-value=6.3  Score=30.84  Aligned_cols=225  Identities=11%  Similarity=0.097  Sum_probs=109.1

Q ss_pred             CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcc
Q 013717           96 GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKH  174 (437)
Q Consensus        96 ~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~  174 (437)
                      .....|..|+--..+.+.-. | .|..|-.+.. .+ +.   ........|..|..-....+.- .||.+..|.......
T Consensus        23 ~~~~~i~~va~G~~h~~al~-dG~v~~wG~N~~-GQ-lG---~~~~~~~~v~~v~~G~~~~~al-~dg~v~~wG~~~~gq   95 (273)
T d1jtdb_          23 EAQSGVDAIAGGYFHGLALK-GGKVLGWGANLN-GQ-LT---MPAATQSGVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQ   95 (273)
T ss_dssp             GGSSSEEEEEECSSEEEEEE-TTEEEEEECCTT-ST-TS---CCGGGGSCCCEEEECSSEEEEE-ETTEEEEEECCTTST
T ss_pred             cCCCCcEEEEccCCEEEEEE-CCEEEEEeCCCC-Cc-ee---eeecccccceEEecCCCceeee-eeeeeeccCCCccee
Confidence            33456788777644444444 6 9999987652 11 11   0012334566666544442222 489999998654321


Q ss_pred             cccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEeeccccc
Q 013717          175 HKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDA  254 (437)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  254 (437)
                      .....                              .....+..++......+.. .|+.+..|.-...............
T Consensus        96 ~~~~~------------------------------~~~~~~~~i~~~~~~~~~~-~dg~v~~~g~~~~~~~~~~~~~~~~  144 (273)
T d1jtdb_          96 TTVPA------------------------------EARSGVDAIAAGAWASYAL-KDGKVIAWGDDSDGQTTVPAEAQSG  144 (273)
T ss_dssp             TCCCG------------------------------GGGSSCCEEEEETTEEEEE-ETTEEEEEECCTTSTTSCCGGGGSS
T ss_pred             ecccc------------------------------ccccceeEEeeeccccccc-ccccceecccCCCCceeeeccCCce
Confidence            11110                              0112233444444333333 4888998875432221111122334


Q ss_pred             EEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceE
Q 013717          255 VNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMV  334 (437)
Q Consensus       255 v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  334 (437)
                      |..++-  .........++.+..|........    .........|..|+....  +.+.- .||.|+.|=.....+...
T Consensus       145 v~~~~~--~~~~~~~~~~g~~~~~G~~~~g~~----~~~~~~~~~v~~Is~G~~--h~~~l-~dG~v~~WG~n~~Gql~~  215 (273)
T d1jtdb_         145 VTALDG--GVYTALAVKNGGVIAWGDNYFGQT----TVPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTV  215 (273)
T ss_dssp             EEEEEE--CSSEEEEEETTEEEEEECCTTSTT----SCCGGGSSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCC
T ss_pred             EEEEec--cceeeeeecccceeEeecccCCcc----cccccccCCccceeccce--eeEEE-ecCcEEEcCCCCCCccCC
Confidence            554443  222233345788888854322211    111123456777765433  33333 389999997544322221


Q ss_pred             EeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCC
Q 013717          335 VTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGS  372 (437)
Q Consensus       335 ~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~  372 (437)
                      .    ......|..++-...+.+.- .||.|..|-...
T Consensus       216 ~----~~~~~~v~~I~~G~~~~~~l-~~g~v~~WG~~~  248 (273)
T d1jtdb_         216 P----TEALSGVSAIASGEWYSLAL-KNGKVIAWGSSR  248 (273)
T ss_dssp             C----GGGGSSCCEEEECSSCEEEE-ETTEEEEESTTC
T ss_pred             C----ccCCCCcEEEEeCcceEEEE-ECCEEEEECCCC
Confidence            1    11223455555444433333 489999996443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=85.15  E-value=8.7  Score=31.45  Aligned_cols=141  Identities=16%  Similarity=0.206  Sum_probs=81.7

Q ss_pred             cEEEEECCC-cceEEEeec-------ccccEEEEEE--ecC-Ce--EEEEeCCCeEEEecCCCCc---ccceeeEEeeCc
Q 013717          233 SLKIWRASD-LRCLESIKA-------HEDAVNAVAV--SAG-GT--VYTGSADRKIRVWAKPFNE---KRHALIATLEKH  296 (437)
Q Consensus       233 ~i~iwd~~~-~~~~~~~~~-------~~~~v~~~~~--~~~-~~--l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~~  296 (437)
                      .|.+|.+.. ...+..+..       ....+..+++  ++. +.  +++...+|.+..|.+....   .....++.+. .
T Consensus       100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~  178 (353)
T d1h6la_         100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-M  178 (353)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-C
T ss_pred             eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-C
Confidence            577787642 223333321       1224666666  554 43  6677788999988764322   2345566665 4


Q ss_pred             cccEEEEEEccCCCEEEEEeCCCcEEEEECCCCc-cceEEeeeec--ccccceEEEE--e--eCC--EEEEEeCCCcEEE
Q 013717          297 KSAVNALALSDDGTVLFSGACDRSILVWDREDSA-NHMVVTGALR--GHGKAILCLI--N--VAG--LLMSGSADRTVRI  367 (437)
Q Consensus       297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~--~~~~~i~~~~--~--~~~--~l~~~~~dg~i~i  367 (437)
                      ...+..+.+.+....|+.+-++.-|..++..... ....+.....  .....+-.++  .  +++  +|++.-.+++..|
T Consensus       179 ~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~v  258 (353)
T d1h6la_         179 NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAI  258 (353)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred             CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEE
Confidence            5678999999988899999888777777765221 1111211111  1233333333  2  223  5555556889999


Q ss_pred             eeCCCCC
Q 013717          368 WQRGSDG  374 (437)
Q Consensus       368 wd~~~~~  374 (437)
                      ||.....
T Consensus       259 ydr~~~~  265 (353)
T d1h6la_         259 YERQGQN  265 (353)
T ss_dssp             EESSTTC
T ss_pred             EecCCCc
Confidence            9998753

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=81.98  E-value=8.3  Score=28.83  Aligned_cols=152  Identities=14%  Similarity=0.218  Sum_probs=84.3

Q ss_pred             ccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717          143 GSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN  221 (437)
Q Consensus       143 ~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  221 (437)
                      -.|.++++.+.. ..+|+......+|-++.++..+... ++...           ++.         .-....|..+.+-
T Consensus       104 vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~-vPpFs-----------FVt---------DI~~d~I~G~g~~  162 (313)
T d2hu7a1         104 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPGFG-----------FVS---------DIRGDLIAGLGFF  162 (313)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESSCE-----------EEE---------EEETTEEEEEEEE
T ss_pred             EEEEEeeecCceEEEecccCCceEEEEEeCCceeeecc-CCCcc-----------eEE---------eccCCeEEEEeee
Confidence            568888888766 7788877888999998876544332 22100           000         0123344444442


Q ss_pred             C---CeEEEEEC-CCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCC---CeEEEecCCCCcccceeeE--E
Q 013717          222 N---GLIYSVSW-DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSAD---RKIRVWAKPFNEKRHALIA--T  292 (437)
Q Consensus       222 ~---~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~--~  292 (437)
                      .   .-++++.- .|.++|++...|.           ++..-+.++++++++...   ....-+|++.+.-....+.  .
T Consensus       163 ~g~~~sfF~adl~SG~lri~tpkeGS-----------~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd  231 (313)
T d2hu7a1         163 GGGRVSLFTSNLSSGGLRVFDSGEGS-----------FSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKD  231 (313)
T ss_dssp             ETTEEEEEEEETTTEEEEEECCSSEE-----------EEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCH
T ss_pred             cCCcceEEEEecccCCEEEecCCCCc-----------ccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCccc
Confidence            2   33555555 7777777765543           444444555555443321   1222446554331110000  0


Q ss_pred             eeC-ccccEEEEEEccCCCEEEEEeCCCcEEEEEC
Q 013717          293 LEK-HKSAVNALALSDDGTVLFSGACDRSILVWDR  326 (437)
Q Consensus       293 ~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  326 (437)
                      +.. ....|.-+-+.|++++++.+-.||.-.+|.-
T Consensus       232 ~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~n  266 (313)
T d2hu7a1         232 FSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  266 (313)
T ss_dssp             HHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             ceeecceEEEeeeeCCCCcEEEEEecCCchheeec
Confidence            000 1245677789999999999999999999873