Citrus Sinensis ID: 013724

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------
Protein Sequence
MMRQSLSDGSLDTMARRPADPEEELRWMSQEVRESSPRTSAASGDDWRSAFDAAANGPVSLRSYSRSASNGHSRRYSDPAENGDVRSGSNSGSRRTPNREGYRYGYILHSHAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKPSQLLSFCIQLS
Secondary Structure (PSIPRED)
ccccccccccHHHHHccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccHHHHHHHHHHHccccEEccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHcccccccEEEEEEEcccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHcccccccccccccccccccccEEEccccccccccccccccccccEEEEcccccccccccccccccccEEEcccccccccccccccccccccEEEEEccccccccccccccccHHHHccccccccccccccccccccHHHHHHccccccccccccccccEEcc
Secondary Structure Prediction (SSPRO)
cccccHcHHHHHHHHHccccccHHEEEEEEEEcccccccccccccccccHEEEcccccccccccEEcccccccHHccccccccccccccHHHHccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccccccccccccEEEEcccccccccccccccccccEEEEccccccccccccHHHHHcccEEEccccccHHccccHHHccccccEEEccccccHcccccccccHHHHHHcccHcHHcccccccccccHHHHHHHHHcccccccHHHHHHHHHccc
Coil and Loop (DISEMBL)
mmrqslsdgsldtmarrpadpeeELRWMSQEvressprtsaasgddwRSAFdaaangpvslrsysrsasnghsrrysdpaengdvrsgsnsgsrrtpnregyrygYILHShahfdsyegvptaipsedtrdnfTSHLYSALSQKSIETFINRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCkrvygqivlpvfygvdpapvkwptgsygdsfLKLEERFKENSEKLQTWRNALKEKIISACniftktpnpsfsqhLNTLVVLNlrdckslkslpagiHLEFLKeldlsgcsklkrlpdissaANIEEMFLngtaieelPSSIECLYKLLHldledckslkslpsglcklkslkyltlnGCSILQRLNFDIWSILPLVLTTFIYVYKFFVetsaasgddwksafdaaadgpvkpsqLLSFCIQLS
Flexible Loop (DISEMBL)
mmrqslsdgsldtmarrpadpeeeLRWMsqevressprtsaasgddwRSAFDAAangpvslrsysrsasnghsrrysdpaengdvrsgsnsgsrrtpnrEGYRYGYILHSHAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKPSQLLSFCIQLS
Low Complexity Region (SEG)
MMRQSLSDGSLDTMARRPADPEEELRWMSQEVRESSPRTSAASGDDWRSAFDAAANGPVSLRSYSRSASNGHSRRYSDPAENGDVRSGSNSGSRRTPNREGYRYGYILHSHAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKPSQLLSFCIQLS
Disordered region (IsUnstruct)
****************************************************************************************************GYRYGYILHSHAHFDSYEGVPTAI*******NFTSHLYSALSQKSIETFINRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDA**********LLSFCI***
Disordered Region (DISOPRED)
**********************************************WRSAFDAAANGPVSLRSY**********************************************HAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEER****SEKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAF**************SFCIQLS
Disordered Region (DISEMBL)
***********************ELRWM****************DDWRSAFDAAANGPVSLR**********************************PNREGYRYGYILHSHAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKPSQLLSFCIQLS
Disordered Region (DISPRO)
*******************DPEEELRWMSQEVRESSPR********WRS**********************************************************LHSHAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKPSQLLSFCIQLS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMRQSLSDGSLDTMARRPADPEEELRWMSQEVRESSPRTSAASGDDWRSAFDAAANGPVSLRSYSRSASNGHSRRYSDPAENGDVRSGSNSGSRRTPNREGYRYGYILHSHAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKPSQLLSFCIQLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	437	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.279	0.106	0.440	6e-25
O82500	1095	Putative disease resistan	no	no	0.297	0.118	0.421	2e-21
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.242	0.055	0.481	3e-20
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.320	0.107	0.374	8e-18
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.292	0.311	0.385	5e-17
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.276	0.341	0.338	1e-15
Q9SE83	914	Dynamin-2A OS=Arabidopsis	no	no	0.146	0.070	0.632	8e-14
Q9LQ55	920	Dynamin-2B OS=Arabidopsis	no	no	0.160	0.076	0.586	5e-12
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.272	0.303	0.354	1e-11
Q9SYC9	571	Vesicle-associated protei	no	no	0.308	0.236	0.292	2e-11

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  115 bits (289), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 56/127 (44%), Positives = 81/127 (63%), Gaps = 5/127 (3%)

Query: 127 EDTRDNFTSHLYSALSQKSIETF-----INRGDEISQSLVDAIEASAISLIIFSEGYASS 181
           EDTR  FTSHLY  L+ K I+TF     +  G  I   L  AIE S  ++++FSE YA+S
Sbjct: 21  EDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIVVFSENYATS 80

Query: 182 RWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQT 241
           RW  ++LVKI++CK  + Q V+P+FY VDP+ V+    S+  +F + E ++K++ E +Q 
Sbjct: 81  RWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQR 140

Query: 242 WRNALKE 248
           WR AL E
Sbjct: 141 WRIALNE 147

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/140 (42%), Positives = 76/140 (54%), Gaps = 10/140 (7%)

Query: 127 EDTRDNFTSHLYSALSQKSIETF----INRGDEISQSLVDAIEASAISLIIFSEGYASSR 182
           ED R+NF SHL      K I TF    I R   I   L  AI  S IS+++FSE YASS 
Sbjct: 20  EDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHELRAAIRESKISVVLFSENYASSS 79

Query: 183 WFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTW 242
           W  D+L++I++CK   G  V+PVFY VDP+ ++  TG +G SF  LE    +  E+   W
Sbjct: 80  WCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGMSF--LETCCGKTEERQHNW 137

Query: 243 RNALKEKIISACNIFTKTPN 262
           R AL +    A NI    P 
Sbjct: 138 RRALTD----AANILGDHPQ 153

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score =  100 bits (248), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 77/108 (71%), Gaps = 2/108 (1%)

Query: 272  LVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEEL 331
            LV LNL+ C  L+++P+ + LE L+ L+LSGCSKL   P+IS   N++E+++ GT I+E+
Sbjct: 1307 LVFLNLKGCSKLENIPSMVDLESLEVLNLSGCSKLGNFPEIS--PNVKELYMGGTMIQEI 1364

Query: 332  PSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRL 379
            PSSI+ L  L  LDLE+ + LK+LP+ + KLK L+ L L+GC  L+R 
Sbjct: 1365 PSSIKNLVLLEKLDLENSRHLKNLPTSIYKLKHLETLNLSGCISLERF 1412

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 92.0 bits (227), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 90/171 (52%), Gaps = 31/171 (18%)

Query: 88  GSNSGSRRTPNREGYRYGYILHSHAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIE 147
            S+SGSRR               +  F S+ G       ED RD+F SHL   L  K+I 
Sbjct: 4   ASSSGSRR---------------YDVFPSFRG-------EDVRDSFLSHLLKELRGKAI- 40

Query: 148 TFIN----RGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVL 203
           TFI+    R   I   L+ AI+ S I+++IFS+ YASS W  ++LV+I +C     Q+V+
Sbjct: 41  TFIDDEIERSRSIGPELLSAIKESRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQMVI 100

Query: 204 PVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSE-KLQTWRNALKEKIISA 253
           P+F+ VD + VK  TG +G  F   EE  K  SE + Q+W+ AL    + A
Sbjct: 101 PIFFHVDASEVKKQTGEFGKVF---EETCKAKSEDEKQSWKQALAAVAVMA 148

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 7/135 (5%)

Query: 127 EDTRDNFTSHLYSALSQKSIETFINRGDEISQ---SLVDAIEASAISLIIFSEGYASSRW 183
           +D R  F S L  AL ++ I  FI+  +E  +   SL D I  S I+L+IFSEGY  S W
Sbjct: 31  KDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLISLFDTIGESKIALVIFSEGYCESHW 90

Query: 184 FFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWR 243
             D+LVKI +       I++P+FY +D   VK  TG +GD+F  L ++++   +KL  W 
Sbjct: 91  CMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKYQPEPKKLHKWT 150

Query: 244 NALKEKIISACNIFT 258
            AL     S C +F+
Sbjct: 151 EAL----FSVCELFS 161

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 73/124 (58%), Gaps = 3/124 (2%)

Query: 127 EDTRDNFTSHLYSALSQKSIETFINRGDEISQSLVDA---IEASAISLIIFSEGYASSRW 183
           +D R+ F S L  A+ + +I  FI++ + +   LV+    I+ S ++++IFS+ Y SS W
Sbjct: 23  KDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLVNLFVRIQESRVAVVIFSKDYTSSEW 82

Query: 184 FFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWR 243
             D+L +I  C    G   +P+FY + P+ V    G +GD+F  L+E++K + E+ Q W+
Sbjct: 83  CLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKGGFGDTFRVLKEKYKNDPERTQKWQ 142

Query: 244 NALK 247
            AL+
Sbjct: 143 EALE 146

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SE83|DRP2A_ARATH Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 SV=2

 Score = 78.6 bits (192), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 49/68 (72%), Gaps = 4/68 (5%)

Query: 34  ESSPRTSA-ASGDDWRSAFDAAANGPVSLRSYSRSASNGHSRRYSDPAENGDVRS-GSNS 91
           ESSPR S  +SGDDW +AF++AANGP    S S+  S GHSRRYSDPA+NGD  S GS S
Sbjct: 835 ESSPRASGGSSGDDWMNAFNSAANGPSD--SLSKYGSGGHSRRYSDPAQNGDAASPGSGS 892

Query: 92  GSRRTPNR 99
             R TPNR
Sbjct: 893 NRRTTPNR 900

Microtubule-associated force-producing protein involved in clathrin-mediated vesicle trafficking from the trans-Golgi network to the central vacuole. Able to bind and hydrolyze GTP. Binds specifically to phosphatidylinositol 3-phosphate (PtdIns3P).

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|Q9LQ55|DRP2B_ARATH Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 SV=2

 Score = 72.8 bits (177), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 53/75 (70%), Gaps = 5/75 (6%)

Query: 27  WMSQEVRESSPRTSA-ASGDDWRSAFDAAANGPVSLRSYSRSASNGHSRRYSDPAENGDV 85
           W      ESSPRT+  +SG+DW +AF+AAA+GP SL+ Y    S GHSRRYSDPA+NG+ 
Sbjct: 835 WSDNSGTESSPRTNGGSSGEDWMNAFNAAASGPDSLKRY---GSGGHSRRYSDPAQNGED 891

Query: 86  RSGSNSGSRR-TPNR 99
            SGS   SRR TPNR
Sbjct: 892 SSGSGGSSRRTTPNR 906

Putative microtubule-associated force-producing protein, able to bind and hydrolyze GTP.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 5/124 (4%)

Query: 128 DTRDNFTSHLYSALSQKSIETFINR----GDEISQSLVDAIEASAISLIIFSEGYASSRW 183
           D R +F S L  AL + +I  FI+     G E++ +L+  IE S ++L+IFS  +  S  
Sbjct: 25  DVRKHFISFLVPALREANINVFIDENEFLGSEMA-NLLTRIEESELALVIFSVDFTRSHR 83

Query: 184 FFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWR 243
             ++L KI + K     IV+P+FY V P+ VK+  G +GD+F  LE   +      Q W+
Sbjct: 84  CLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFLEGKFGDNFRALERNNRHMLPITQKWK 143

Query: 244 NALK 247
            AL+
Sbjct: 144 EALE 147

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 12/147 (8%)

Query: 104 YGYILHSHAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFIN----RGDEISQS 159
           +G  L  +  F ++ G       ++ R++F   L  A+  + I  F +    RG  ++  
Sbjct: 351 HGITLPQYQVFINFRG-------DELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLNY- 402

Query: 160 LVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTG 219
           L   IE S +++ IFSE Y  S W  D+LVK+ +       +V+PVFY ++    K   G
Sbjct: 403 LFRRIEESRVAVAIFSERYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNATACKRFMG 462

Query: 220 SYGDSFLKLEERFKENSEKLQTWRNAL 246
           ++GD+   LE  ++   E++Q W+ AL
Sbjct: 463 AFGDNLRNLEWEYRSEPERIQKWKEAL 489

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	437
223452607	409	resistance protein [Glycine max]	0.567	0.606	0.370	2e-37
255564976	944	TMV resistance protein N, putative [Rici	0.295	0.136	0.563	2e-33
351722793	299	TIR-NBS-LRR type disease resistance prot	0.299	0.438	0.521	2e-32
357486483	242	TMV resistance protein N [Medicago trunc	0.304	0.549	0.479	3e-32
255561496	876	TMV resistance protein N, putative [Rici	0.279	0.139	0.579	4e-32
147780473	435	hypothetical protein VITISV_034310 [Viti	0.441	0.443	0.431	4e-32
449477815	320	PREDICTED: putative disease resistance p	0.292	0.4	0.521	5e-32
357486467	200	TMV resistance protein N [Medicago trunc	0.320	0.7	0.466	1e-31
224127917	1470	tir-nbs-lrr resistance protein [Populus	0.288	0.085	0.552	5e-31
359496034	1132	PREDICTED: TMV resistance protein N-like	0.279	0.107	0.543	7e-31

>gi|223452607|gb|ACM89630.1| resistance protein [Glycine max]

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/310 (37%), Positives = 166/310 (53%), Gaps = 62/310 (20%)

Query: 127 EDTRDNFTSHLYSALSQKSIETF-----INRGDEISQSLVDAIEASAISLIIFSEGYASS 181
           +DTR  FT +L+++L ++ I+ +     + RG  IS  L++AIE S  +LII S  YASS
Sbjct: 24  DDTRKGFTHNLFASLERRGIKAYRDDHDLERGKVISVELIEAIEESMFALIILSSNYASS 83

Query: 182 RWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQT 241
            W  D+L KIL+CK+     V P+F GVDP+ V+   GS+  +F   EE+F+E  +K++T
Sbjct: 84  TWCLDELQKILECKKE----VFPIFLGVDPSDVRHQRGSFAKAFRDHEEKFREEKKKVET 139

Query: 242 WRNALKEKIISACNIFTKTPNPSFSQ------------------------------HLNT 271
           WR+AL+E + S     +K  NP F Q                              +L +
Sbjct: 140 WRHALRE-VASYSGWDSKDKNPYFGQIFKFLLEKLKCIDLSFSKNLKQSPDFDAAPNLES 198

Query: 272 LV---------------------VLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLP 310
           LV                     ++NL DCK LK+LP+ + +  LK L+LSGCS+ K LP
Sbjct: 199 LVLEGCTSLTEVHPSLVRHKKLAMMNLEDCKRLKTLPSNMEMSSLKYLNLSGCSEFKYLP 258

Query: 311 DIS-SAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLT 369
           +   S   +  + L  T I +LPSS+ CL  L HL+L++CK+L  LP    KLKSLK+L 
Sbjct: 259 EFGESMEQLSLLILKETPITKLPSSLGCLVGLAHLNLKNCKNLVCLPDTFHKLKSLKFLD 318

Query: 370 LNGCSILQRL 379
           + GCS L  L
Sbjct: 319 VRGCSKLCSL 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564976|ref|XP_002523481.1| TMV resistance protein N, putative [Ricinus communis] gi|223537309|gb|EEF38940.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/133 (56%), Positives = 94/133 (70%), Gaps = 4/133 (3%)

Query: 120 VPTAIPSEDTRDNFTSHLYSALSQKSIETFIN----RGDEISQSLVDAIEASAISLIIFS 175
           V  +   EDTRDNFTSHLY+AL QK I+ F++    RG+EIS +LV  IE S +S+IIFS
Sbjct: 18  VFVSFRGEDTRDNFTSHLYAALHQKQIKAFVDDKLSRGEEISAALVKVIEESMVSVIIFS 77

Query: 176 EGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKEN 235
           E YA S W  D+LVKIL+CK+  GQIVLPVFY VDP+ V    G +G +F++ E+ FKE 
Sbjct: 78  ENYAFSPWCLDELVKILECKKTVGQIVLPVFYHVDPSDVAEQKGGFGAAFIEHEKCFKER 137

Query: 236 SEKLQTWRNALKE 248
            +KLQ WR AL E
Sbjct: 138 IDKLQKWRAALTE 150

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722793|ref|NP_001237768.1| TIR-NBS-LRR type disease resistance protein [Glycine max] gi|223452578|gb|ACM89616.1| TIR-NBS-LRR type disease resistance protein [Glycine max]

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/142 (52%), Positives = 98/142 (69%), Gaps = 11/142 (7%)

Query: 111 HAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFIN----RGDEISQSLVDAIEA 166
           H  F S+ G       EDTR  FTSHLY+AL++  ++T+I+    RGDEIS SL+ AI+ 
Sbjct: 19  HDVFLSFRG-------EDTRYTFTSHLYAALTRLQVKTYIDNELERGDEISPSLLRAIDD 71

Query: 167 SAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFL 226
           + +++I+FSE YASSRW  D+LVKI++CKR  GQI++PVFY VDP  V+  TGSYG +F 
Sbjct: 72  AKVAVIVFSENYASSRWCLDELVKIMECKRKNGQIIVPVFYHVDPTHVRHQTGSYGHAFA 131

Query: 227 KLEERFKENSEKLQTWRNALKE 248
             E+RF  N  K+QTWR  L E
Sbjct: 132 MHEQRFVGNMNKVQTWRLVLGE 153

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486483|ref|XP_003613529.1| TMV resistance protein N [Medicago truncatula] gi|355514864|gb|AES96487.1| TMV resistance protein N [Medicago truncatula] gi|388497304|gb|AFK36718.1| unknown [Medicago truncatula] gi|388511843|gb|AFK43983.1| unknown [Medicago truncatula]

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/144 (47%), Positives = 102/144 (70%), Gaps = 11/144 (7%)

Query: 109 HSHAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFIN----RGDEISQSLVDAI 164
             H  F S+ G       EDTR  FTSHL++ L++  + T+I+    RGDEIS +L+ AI
Sbjct: 12  QKHEVFLSFRG-------EDTRYTFTSHLHATLTRLDVGTYIDYHLQRGDEISSALLRAI 64

Query: 165 EASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDS 224
           E +++S+++FS+ Y +S+W  D+LVKIL+CK++ GQIVLP+FY ++P+ V+  TGSY D+
Sbjct: 65  EEASLSVVVFSKNYGNSKWCLDELVKILECKKMRGQIVLPIFYDIEPSDVRNQTGSYADA 124

Query: 225 FLKLEERFKENSEKLQTWRNALKE 248
           F+K EERF  N E++Q WR AL+E
Sbjct: 125 FVKHEERFHGNLERVQKWREALRE 148

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561496|ref|XP_002521758.1| TMV resistance protein N, putative [Ricinus communis] gi|223538971|gb|EEF40568.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 73/126 (57%), Positives = 93/126 (73%), Gaps = 4/126 (3%)

Query: 127 EDTRDNFTSHLYSALSQKSIETF----INRGDEISQSLVDAIEASAISLIIFSEGYASSR 182
           EDTRDNFTSHLYSAL++K I TF    I RG+EIS S+  AI+ S +S+IIFSE YA S+
Sbjct: 20  EDTRDNFTSHLYSALNKKKIFTFMDKEIKRGEEISPSIAKAIKGSKLSVIIFSEKYAFSK 79

Query: 183 WFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTW 242
           W  D+L KIL+CK++ GQIV+PVFY VDP  V+   GS+  +F K EE  KE  EK+++W
Sbjct: 80  WCLDELTKILECKKMNGQIVIPVFYRVDPVHVRNQRGSFACAFAKHEETLKERMEKVESW 139

Query: 243 RNALKE 248
           R+AL E
Sbjct: 140 RSALNE 145

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780473|emb|CAN66817.1| hypothetical protein VITISV_034310 [Vitis vinifera]

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 88/204 (43%), Positives = 120/204 (58%), Gaps = 11/204 (5%)

Query: 127 EDTRDNFTSHLYSALSQKSIETFIN-----RGDEISQSLVDAIEASAISLIIFSEGYASS 181
           EDTR+NFT+HLY  L  K I TFI+     RG  IS +LV AIE S  S+I+ SE YASS
Sbjct: 119 EDTRNNFTAHLYKELRTKGINTFIDDDKLDRGQVISPALVAAIENSMFSIIVLSENYASS 178

Query: 182 RWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQT 241
           RW  ++LVKIL+CK   GQ VLP+FY VDP+ V+   G +G++  K EE FKEN  ++Q 
Sbjct: 179 RWCLEELVKILECKESRGQRVLPIFYNVDPSDVRKHMGKFGEALAKHEENFKENMGRVQI 238

Query: 242 WRNALKEKIISACNIFT-KTPNPSFSQHLNTLVVLNLRDCKSLKSLPA-GIHLEFLKELD 299
           WR+AL +      N+    + N +    +  +V   L D   + S  A  + LE LK ++
Sbjct: 239 WRDALTQ----VANLSGWDSRNKNEVMLIEEIVSGILNDIIHIPSSDAEDLVLEKLKFMN 294

Query: 300 LSGCSKLKRLPDISSAANIEEMFL 323
           LS    L+  PD S   N+E++ L
Sbjct: 295 LSHSRYLQETPDFSGVINLEQLVL 318

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477815|ref|XP_004155131.1| PREDICTED: putative disease resistance protein At4g11170-like [Cucumis sativus]

 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 72/138 (52%), Positives = 96/138 (69%), Gaps = 10/138 (7%)

Query: 113 HFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFIN----RGDEISQSLVDAIEASA 168
           HFD +     +   EDTR NFTSHL  AL Q+ I  FI+    RG+EIS SL++AIE S 
Sbjct: 16  HFDVF----LSFRGEDTRSNFTSHLNMALRQRGINVFIDNKLSRGEEISASLLEAIEGSK 71

Query: 169 ISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKL 228
           IS++I SE YASSRW  ++LVKI+ C ++ GQ+VLP+FY VDP+ V+  +G +G+ F KL
Sbjct: 72  ISIVIISENYASSRWCLNELVKIIMCNKLRGQVVLPIFYKVDPSEVRKQSGKFGEEFAKL 131

Query: 229 EERFKENSEKLQTWRNAL 246
           E RF  +SEK+Q WR A+
Sbjct: 132 EVRF--SSEKMQAWREAM 147

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486467|ref|XP_003613521.1| TMV resistance protein N [Medicago truncatula] gi|355514856|gb|AES96479.1| TMV resistance protein N [Medicago truncatula]

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/148 (46%), Positives = 105/148 (70%), Gaps = 8/148 (5%)

Query: 113 HFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFIN----RGDEISQSLVDAIEASA 168
           H   +  V  +   EDTR  FTSHL++ L++  + T+I+    RGDEIS +L+ AIE + 
Sbjct: 10  HHQKHGQVFLSFRGEDTRYTFTSHLHATLTRLKVGTYIDYNLQRGDEISSTLLMAIEEAK 69

Query: 169 ISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKL 228
           +S++IFS+ Y +S+W  D+LVKIL+CK++ GQI+LP+FY +DP+ V+  TGSY ++F+K 
Sbjct: 70  VSIVIFSKNYGNSKWCLDELVKILECKKMKGQILLPIFYDIDPSHVRNQTGSYAEAFVKH 129

Query: 229 EERFKENSEKLQTWRNALKEKIISACNI 256
           E++F+   EK+QTWR+AL+E    A NI
Sbjct: 130 EKQFQGKLEKVQTWRHALRE----AANI 153

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 74/134 (55%), Positives = 94/134 (70%), Gaps = 8/134 (5%)

Query: 127 EDTRDNFTSHLYSALSQKSIETFIN----RGDEISQSLVDAIEASAISLIIFSEGYASSR 182
           +DTRDNF SHL  AL +K I+TFI+    RG+EI+ +L+  IE S IS+IIFS  YASS 
Sbjct: 22  KDTRDNFVSHLRDALCRKQIKTFIDDKLERGEEITGALLRTIEESRISVIIFSRNYASSP 81

Query: 183 WFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTW 242
           W  D+LVKIL+CK+ YGQIVLPVFY VDP+ V   TGS+G++F +LE  FK+  +K+  W
Sbjct: 82  WCVDELVKILECKKAYGQIVLPVFYHVDPSDVDQQTGSFGNAFAELERNFKQKMDKVPRW 141

Query: 243 RNALKEKIISACNI 256
           R  L     SA NI
Sbjct: 142 RADLT----SAANI 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496034|ref|XP_002277500.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 69/127 (54%), Positives = 88/127 (69%), Gaps = 5/127 (3%)

Query: 127 EDTRDNFTSHLYSALSQKSIETFINR-----GDEISQSLVDAIEASAISLIIFSEGYASS 181
           EDTR+NFT+HLY AL  K I  FI+      G+ IS +L+ AIE S  S+++ SE YASS
Sbjct: 19  EDTRNNFTAHLYDALHCKGINAFIDADKLRIGEIISPALLSAIEGSRFSIVVLSENYASS 78

Query: 182 RWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQT 241
           RW  ++LVKIL+CK+  GQ+VLP+FY VDP+ V+   GSYG +F K EE  KEN EK+  
Sbjct: 79  RWCLEELVKILECKKTKGQVVLPIFYQVDPSDVRKQKGSYGKAFAKHEENMKENMEKVHI 138

Query: 242 WRNALKE 248
           WR AL E
Sbjct: 139 WREALSE 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	437
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.409	0.156	0.379	1.7e-37
TAIR|locus:2151491	1123	AT5G46450 [Arabidopsis thalian	0.270	0.105	0.408	1.3e-36
TAIR|locus:2162439	1008	AT5G22690 [Arabidopsis thalian	0.295	0.127	0.367	1.8e-34
TAIR|locus:2151466	1353	VICTL "VARIATION IN COMPOUND T	0.292	0.094	0.397	3.3e-34
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.297	0.100	0.432	5.2e-34
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.256	0.088	0.486	2.3e-33
TAIR|locus:2151506	1127	RPS6 "RESISTANT TO P. SYRINGAE	0.297	0.115	0.372	4.6e-33
TAIR|locus:2130270	1449	RPP5 "RECOGNITION OF PERONOSPO	0.299	0.090	0.420	7.3e-33
TAIR|locus:2098145	1240	AT3G44630 [Arabidopsis thalian	0.272	0.095	0.392	2.3e-32
TAIR|locus:2175075	1068	AT5G41750 [Arabidopsis thalian	0.267	0.109	0.439	3e-32

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 286 (105.7 bits), Expect = 1.7e-37, Sum P(2) = 1.7e-37
 Identities = 74/195 (37%), Positives = 111/195 (56%)

Query:   116 SYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETF-----INRGDEISQSLVDAIEASAIS 170
             SY+ V  +   EDTR  FTSHLY  L+ K I+TF     +  G  I   L  AIE S  +
Sbjct:    11 SYD-VFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFA 69

Query:   171 LIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEE 230
             +++FSE YA+SRW  ++LVKI++CK  + Q V+P+FY VDP+ V+    S+  +F + E 
Sbjct:    70 IVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHET 129

Query:   231 RFKENSEKLQTWRNALKE--KIISACNIFTKTPNPSFSQHLNTLVVLNLRDCK-SLKSLP 287
             ++K++ E +Q WR AL E   +  +C+   KT      Q ++ +   + + CK SL  L 
Sbjct:   130 KYKDDVEGIQRWRIALNEAANLKGSCDNRDKTDADCIRQIVDQI---SSKLCKISLSYLQ 186

Query:   288 --AGI--HLEFLKEL 298
                GI  HLE ++ L
Sbjct:   187 NIVGIDTHLEKIESL 201

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 49/120 (40%), Positives = 76/120 (63%)

Query:   263 PSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMF 322
             PS  Q+L+ L  LN+  C +L++LP G++LE L++LD SGCS+L+  PDIS+  NI  + 
Sbjct:   789 PSSFQNLHNLEHLNIARCTNLETLPTGVNLELLEQLDFSGCSRLRSFPDIST--NIFSLV 846

Query:   323 LNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFD 382
             L+GT IEE+P  IE  Y+L  L +  C +L+ +   + KL+ L+ +  + C  L   N+D
Sbjct:   847 LDGTGIEEVPWWIEDFYRLSFLSMIGCNNLQGVSLNISKLEKLETVDFSDCEALSHANWD 906

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2162439 AT5G22690 [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
 Identities = 50/136 (36%), Positives = 77/136 (56%)

Query:   117 YEGVPTAIPSEDTRDNFTSHLYSALSQKSIETF----INRGDEISQSLVDAIEASAISLI 172
             Y+  P+    ED R  F SH    L +K I  F    I R   +   L  AI  S I+++
Sbjct:    10 YDVFPS-FSGEDVRVTFLSHFLKELDRKLISVFKDNDIQRSQSLDPELKLAIRDSRIAIV 68

Query:   173 IFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERF 232
             +FS+ YA+S W  D+L++I++CK  +GQIV+PVFYG+DP  V+  +G +G  F    +  
Sbjct:    69 VFSKNYAASSWCLDELLEIVKCKEEFGQIVIPVFYGLDPCHVRKQSGEFGIVFENTCQT- 127

Query:   233 KENSEKLQTWRNALKE 248
              +  +++Q WR AL +
Sbjct:   128 -KTDDEIQKWRRALTD 142

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2151466 VICTL "VARIATION IN COMPOUND TRIGGERED ROOT growth response-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.3e-34, Sum P(2) = 3.3e-34
 Identities = 54/136 (39%), Positives = 82/136 (60%)

Query:   117 YEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDEISQSL----VDAIEASAISLI 172
             Y+  P+     D R NF SHL   L  KS+ +F ++  E SQSL      AI  S I+L+
Sbjct:     9 YDVFPS-FSGTDVRRNFLSHLLKGL-HKSVNSFRDQNMERSQSLDPMLKQAIRDSRIALV 66

Query:   173 IFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERF 232
             +FS+ YASS W  ++L++I++CK  +GQ+V+P+FY +DP+ V+   G +G +F +   R 
Sbjct:    67 VFSKNYASSSWCLNELLEIVKCKEEFGQMVIPIFYCLDPSHVRHQDGDFGKNFEETCGRN 126

Query:   233 KENSEKLQTWRNALKE 248
              E  EK+Q W  AL +
Sbjct:   127 TEE-EKIQ-WEKALTD 140

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 5.2e-34, Sum P(2) = 5.2e-34
 Identities = 58/134 (43%), Positives = 80/134 (59%)

Query:   246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSK 305
             L+E  +S C    +   PS  ++L  L    L +C  LK +P GI L+ L+ + +SGCS 
Sbjct:   650 LEELNLSYCQSLVEV-TPSI-KNLKGLSCFYLTNCIQLKDIPIGIILKSLETVGMSGCSS 707

Query:   306 LKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSL 365
             LK  P+IS   N   ++L+ T IEELPSSI  L  L+ LD+ DC+ L++LPS L  L SL
Sbjct:   708 LKHFPEISW--NTRRLYLSSTKIEELPSSISRLSCLVKLDMSDCQRLRTLPSYLGHLVSL 765

Query:   366 KYLTLNGCSILQRL 379
             K L L+GC  L+ L
Sbjct:   766 KSLNLDGCRRLENL 779

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 2.3e-33, Sum P(2) = 2.3e-33
 Identities = 56/115 (48%), Positives = 79/115 (68%)

Query:   263 PSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMF 322
             P   Q++ +L+ LNLR C SL+SLP  I L  L+ L LS CS+ K    I  A N+EE++
Sbjct:   702 PQVLQNMESLMFLNLRGCTSLESLP-DITLVGLRTLILSNCSRFKEFKLI--AKNLEELY 758

Query:   323 LNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQ 377
             L+GTAI+ELPS+I  L KL+ L L+DCK+L SLP  +  LK+++ + L+GCS L+
Sbjct:   759 LDGTAIKELPSTIGDLQKLISLKLKDCKNLLSLPDSIGNLKAIQEIILSGCSSLE 813

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2151506 RPS6 "RESISTANT TO P. SYRINGAE 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 4.6e-33, Sum P(2) = 4.6e-33
 Identities = 51/137 (37%), Positives = 80/137 (58%)

Query:   116 SYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETF----INRGDEISQSLVDAIEASAISL 171
             SY   P+    ED R+ F SH    L +K I +F    I R   +   L   I  S I++
Sbjct:    13 SYHVFPS-FSGEDVRNTFLSHFLKELDRKLIISFKDNEIERSQSLDPELKHGIRNSRIAV 71

Query:   172 IIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEER 231
             ++FS+ YASS W  ++L++I++CK+ +GQ+V+P+FY +DP+ V+  TG +G  F K   R
Sbjct:    72 VVFSKTYASSSWCLNELLEIVKCKKEFGQLVIPIFYNLDPSHVRKQTGDFGKIFEKTC-R 130

Query:   232 FKENSEKLQTWRNALKE 248
              K   EK++ W+ AL +
Sbjct:   131 NKTVDEKIR-WKEALTD 146

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2130270 RPP5 "RECOGNITION OF PERONOSPORA PARASITICA 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 7.3e-33, Sum P(2) = 7.3e-33
 Identities = 58/138 (42%), Positives = 81/138 (58%)

Query:   117 YEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDE----ISQSLVDAIEASAISLI 172
             Y+  P+     D R  F SHL  AL  KSI TFI+ G E    I+  L+ AI  + IS++
Sbjct:    12 YDVFPS-FSGVDVRKTFLSHLIEALDGKSINTFIDHGIERSRTIAPELISAIREARISIV 70

Query:   173 IFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEE-- 230
             IFS+ YASS W  ++LV+I +C    GQ+V+PVFY VDP+ V+  TG +G  F K  E  
Sbjct:    71 IFSKNYASSTWCLNELVEIHKCFNDLGQMVIPVFYDVDPSEVRKQTGEFGKVFEKTCEVS 130

Query:   231 RFKENSEKLQTWRNALKE 248
             + K+  ++ Q W  AL +
Sbjct:   131 KDKQPGDQKQRWVQALTD 148

GO:0000166 "nucleotide binding" evidence=IEA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

TAIR|locus:2098145 AT3G44630 [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 2.3e-32, Sum P(2) = 2.3e-32
 Identities = 49/125 (39%), Positives = 79/125 (63%)

Query:   128 DTRDNFTSHLYSALSQKSIETFINRGDEISQS----LVDAIEASAISLIIFSEGYASSRW 183
             D R  F SH+  +  +K I+TFI+   E S+S    L +AI+ S I++++ S  YASS W
Sbjct:   104 DVRRTFLSHIMESFRRKGIDTFIDNNIERSKSIGPELKEAIKGSKIAIVLLSRKYASSSW 163

Query:   184 FFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWR 243
               D+L +I++C+++ GQIV+ +FY V+P  +K  TG +G +F K   R K   E+++ WR
Sbjct:   164 CLDELAEIMKCRQMVGQIVMTIFYEVEPTDIKKQTGEFGKAFTKTC-RGKPK-EQVERWR 221

Query:   244 NALKE 248
              AL++
Sbjct:   222 KALED 226

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2175075 AT5G41750 [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 3.0e-32, Sum P(2) = 3.0e-32
 Identities = 54/123 (43%), Positives = 76/123 (61%)

Query:   128 DTRDNFTSHLYSALSQKSIETF----INRGDEISQSLVDAIEASAISLIIFSEGYASSRW 183
             D R  F SHL+S  + K I TF    I+RG  I   L+  I  + +S+++ S+ YASS W
Sbjct:    23 DVRKGFLSHLHSVFASKGITTFNDQKIDRGQTIGPELIQGIREARVSIVVLSKKYASSSW 82

Query:   184 FFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWR 243
               D+LV+IL+CK   GQIV+ VFY VDP+ VK  +G +G++F K  +  K    K++ WR
Sbjct:    83 CLDELVEILKCKEALGQIVMTVFYEVDPSDVKKQSGVFGEAFEKTCQG-KNEEVKIR-WR 140

Query:   244 NAL 246
             NAL
Sbjct:   141 NAL 143

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00038336001 SubName- Full=Chromosome undetermined scaffold_92, whole genome shotgun sequence; (411 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	437
pfam01582	135	pfam01582, TIR, TIR domain	3e-29
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	5e-25
PLN03210	1153	PLN03210, PLN03210, Resistant to P	8e-24
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-23
PLN03210	1153	PLN03210, PLN03210, Resistant to P	6e-16
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-15
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  110 bits (278), Expect = 3e-29
 Identities = 49/130 (37%), Positives = 79/130 (60%), Gaps = 7/130 (5%)

Query: 125 PSEDTRDNFTSHLYSALSQKSIETFIN-----RGDEISQSLVDAIEASAISLIIFSEGYA 179
             +D RD F SHL   L +K I+  I+      G+ I ++L +AIE S  +++IFS  YA
Sbjct: 6   SGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIFSSNYA 65

Query: 180 SSRWFFDKLVKILQCKRVYG--QIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSE 237
           SS W  D+LV+I++C    G  +++LP+FY VDP+ V+  +G +G +FLK  +   +  +
Sbjct: 66  SSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWSGDKED 125

Query: 238 KLQTWRNALK 247
           K++ W+ AL 
Sbjct: 126 KIRFWKKALY 135

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score = 99.3 bits (248), Expect = 5e-25
 Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 11/138 (7%)

Query: 114 FDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINR---GDEISQSLVDAIEASAIS 170
           F SY G       ED R+ F SHL   L    +  FI+    G    + + +AIE S I+
Sbjct: 5   FISYSG------KEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIA 58

Query: 171 LIIFSEGYASSRWFFDKLVKILQCKRVYGQI-VLPVFYGVDPAPVKWPTGSYGDSFLKLE 229
           +++ S  YA S W  D+LV  L+     G + V+P+FY V P+ V+   G +   F K  
Sbjct: 59  IVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNY 118

Query: 230 ERFKENSEKLQTWRNALK 247
            ++ E  EK Q W+ AL 
Sbjct: 119 LKWPE-DEKEQFWKKALY 135

Length = 140

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  104 bits (261), Expect = 8e-24
 Identities = 48/120 (40%), Positives = 75/120 (62%), Gaps = 2/120 (1%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMF 322
           PS  Q+L+ L  L + +C +L++LP GI+LE L+ LDLSGCS+L+  PDIS+  NI ++ 
Sbjct: 795 PSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIST--NISDLN 852

Query: 323 LNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFD 382
           L+ T IEE+P  IE    L  LD+  C +L+ +   + KLK L+ +  + C  L   +++
Sbjct: 853 LSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWN 912

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  103 bits (259), Expect = 1e-23
 Identities = 52/135 (38%), Positives = 79/135 (58%), Gaps = 7/135 (5%)

Query: 116 SYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDEISQS----LVDAIEASAISL 171
            Y+  P+    ED R  F SH    L +K I  F +   E SQS    L  AI  S I++
Sbjct: 12  VYDVFPS-FSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAV 70

Query: 172 IIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEER 231
           ++FS+ YASS W  ++L++I++CK   GQ+V+PVFYG+DP+ V+  TG +G++F K  + 
Sbjct: 71  VVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQN 130

Query: 232 FKENSEKLQTWRNAL 246
             E+ +    W+ AL
Sbjct: 131 KTEDEKIQ--WKQAL 143

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 79.9 bits (197), Expect = 6e-16
 Identities = 48/112 (42%), Positives = 71/112 (63%), Gaps = 4/112 (3%)

Query: 268 HLNTLVVLNLRDCKSLKSLPAGIH-LEFLKELDLSGCSKLKRLPDISSAANIEEMFLNG- 325
               LV L ++  K L+ L  G+H L  L+ +DL G   LK +PD+S A N+E + L+  
Sbjct: 609 RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDC 667

Query: 326 TAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQ 377
           +++ ELPSSI+ L KL  LD+  C++L+ LP+G+  LKSL  L L+GCS L+
Sbjct: 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLK 718

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 78.8 bits (194), Expect = 2e-15
 Identities = 47/108 (43%), Positives = 67/108 (62%), Gaps = 5/108 (4%)

Query: 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSK 305
           L+   +S C+   + P  S  Q+LN L  L++  C++L+ LP GI+L+ L  L+LSGCS+
Sbjct: 659 LETLKLSDCSSLVELP--SSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSR 716

Query: 306 LKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLK 353
           LK  PDIS+  NI  + L+ TAIEE PS++  L  L  L L + KS K
Sbjct: 717 LKSFPDIST--NISWLDLDETAIEEFPSNLR-LENLDELILCEMKSEK 761

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 33/163 (20%)

Query: 244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKS------------------ 285
           N L++  +S C      P      +L +L  LNL  C  LKS                  
Sbjct: 681 NKLEDLDMSRCENLEILPT---GINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAI 737

Query: 286 --LPAGIHLEFLKELDLSGCSKLK-------RLPDISS-AANIEEMFL-NGTAIEELPSS 334
              P+ + LE L EL L      K         P ++  + ++  +FL +  ++ ELPSS
Sbjct: 738 EEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS 797

Query: 335 IECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQ 377
           I+ L+KL HL++E+C +L++LP+G+  L+SL+ L L+GCS L+
Sbjct: 798 IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR 839

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 41/118 (34%), Positives = 57/118 (48%), Gaps = 4/118 (3%)

Query: 254 CNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDI 312
            N  T  P        N L  L+L D   ++SLP+ + +L  LK LDLS          +
Sbjct: 125 NNNITDIPPLIGLLKSN-LKELDLSD-NKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL 182

Query: 313 SSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTL 370
           S+ +N+  + L+G  I +LP  IE L  L  LDL +  S+  L S L  LK+L  L L
Sbjct: 183 SNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN-NSIIELLSSLSNLKNLSGLEL 239

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.2 bits (82), Expect = 0.004
 Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 24/82 (29%)

Query: 295 LKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKS 354
           LK LDLS  ++L  +PD          F               L  L  LDL     L S
Sbjct: 2   LKSLDLS-NNRLTVIPD--------GAFKG-------------LPNLKVLDLSGNN-LTS 38

Query: 355 LPSG-LCKLKSLKYLTLNGCSI 375
           +       L SL+ L L+G ++
Sbjct: 39  ISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	437
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN03194	187	putative disease resistance protein; Provisional	100.0
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.72
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.62
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.54
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.54
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.53
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.34
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.33
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.28
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.23
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.06
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.03
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.01
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.99
PLN03150	623	hypothetical protein; Provisional	98.93
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.92
PLN03150	623	hypothetical protein; Provisional	98.85
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.83
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.81
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.75
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.72
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.71
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.69
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.68
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.66
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.61
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.59
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.58
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.57
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.57
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.56
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.52
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.41
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.4
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.3
PRK15386	426	type III secretion protein GogB; Provisional	98.3
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.27
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.23
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.22
PRK15386	426	type III secretion protein GogB; Provisional	98.2
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.2
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.04
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.98
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.93
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.78
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.75
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.74
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.71
KOG4341	483	consensus F-box protein containing LRR [General fu	97.62
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.56
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.49
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.49
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.49
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.46
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.4
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.39
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.39
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.36
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.34
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.26
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.2
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.14
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.0
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.96
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.87
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.71
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	96.67
KOG4341	483	consensus F-box protein containing LRR [General fu	96.55
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.16
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.66
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.54
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.49
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.22
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.74
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.19
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	92.04
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.02
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	90.7
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.56
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.49
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.16
smart00370	26	LRR Leucine-rich repeats, outliers.	90.16
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.84
smart00370	26	LRR Leucine-rich repeats, outliers.	83.48
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	83.48
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	83.14
KOG0473	326	consensus Leucine-rich repeat protein [Function un	82.92

>PLN03210 Resistant to P

Probab=100.00  E-value=3.1e-37  Score=351.51  Aligned_cols=131  Identities=36%  Similarity=0.669  Sum_probs=122.1

Q ss_pred             CCCceeeccCCCcccCchHHHHHHHHhcCCceEEe----cCCCchHHHHHHHHHhcceEEEEecCccccccccHhhHHhh
Q 013724          116 SYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKI  191 (437)
Q Consensus       116 ~~~dvf~sf~g~d~r~~f~~~l~~~L~~~g~~~~~----~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wcl~EL~~i  191 (437)
                      ++||||+||||+|||++|++|||+||.++||.+|+    ++|+.|.++|++||++||++|||||++||+|.|||+||++|
T Consensus        11 ~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i   90 (1153)
T PLN03210         11 WVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEI   90 (1153)
T ss_pred             CCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHH
Confidence            48899999999999999999999999999999999    89999999999999999999999999999999999999999


Q ss_pred             hhhccccCeEEEeeeecCCCCCCCCCCCccCCchhhhhhhhhcChHHHHHHHHhhhh
Q 013724          192 LQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKE  248 (437)
Q Consensus       192 l~c~~~~~~~vlPiFy~VdpS~Vr~q~gsf~~af~~le~~~~~~~e~l~~W~~aL~~  248 (437)
                      ++|+++.+++|+||||+|||++||+|+|.|+++|.+++...  ..+.+++|+.||++
T Consensus        91 ~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~  145 (1153)
T PLN03210         91 VRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTD  145 (1153)
T ss_pred             HHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999877543  45667788776643

syringae 6; Provisional

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=2.3e-34  Score=255.90  Aligned_cols=136  Identities=24%  Similarity=0.394  Sum_probs=118.3

Q ss_pred             CCCCCccccceeccCCCCCCCCceeeccCCCcccCchHHHHHHHHhcCCceEEe-----cCCCchHHHHHHHHHhcceEE
Q 013724           97 PNREGYRYGYILHSHAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISL  171 (437)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~dvf~sf~g~d~r~~f~~~l~~~L~~~g~~~~~-----~~g~~i~~~l~~~i~~S~~~i  171 (437)
                      -||+-.+|    -++..+.++|||||||||+|+|++|++|||++|.++||++|+     ++|+.|.+.|.+||++|+++|
T Consensus        10 ~~~~~~~~----~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~I   85 (187)
T PLN03194         10 NNRLFLHY----PSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGV   85 (187)
T ss_pred             hhhhhccc----ccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEE
Confidence            34544444    456667789999999999999999999999999999999999     689999999999999999999


Q ss_pred             EEecCccccccccHhhHHhhhhhccccCeEEEeeeecCCCCCCCCC-CCccCCchhhhhhhhhcChHHHHHHHHhhhhh-
Q 013724          172 IIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWP-TGSYGDSFLKLEERFKENSEKLQTWRNALKEK-  249 (437)
Q Consensus       172 ~i~S~~~~sS~Wcl~EL~~il~c~~~~~~~vlPiFy~VdpS~Vr~q-~gsf~~af~~le~~~~~~~e~l~~W~~aL~~L-  249 (437)
                      +|||++|++|.||++||++|++|.    +.|+||||+|+|++||+| .|.             ...+.+++|+.+|++. 
T Consensus        86 vVfS~~Ya~S~WCLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va  148 (187)
T PLN03194         86 AVFSPRYCESYFCLHELALIMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAK  148 (187)
T ss_pred             EEECCCcccchhHHHHHHHHHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHh
Confidence            999999999999999999999984    379999999999999997 332             1357899999999984 


Q ss_pred             hccc
Q 013724          250 IISA  253 (437)
Q Consensus       250 ~Ls~  253 (437)
                      ++.+
T Consensus       149 ~l~G  152 (187)
T PLN03194        149 YTVG  152 (187)
T ss_pred             cccc
Confidence            3443

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.72  E-value=8.3e-19  Score=153.48  Aligned_cols=127  Identities=26%  Similarity=0.446  Sum_probs=106.7

Q ss_pred             eeeccCCCcccCchHHHHHHHHhcC--CceEEe-----cCCCchHHHHHHHHHhcceEEEEecCccccccccHhhHHhhh
Q 013724          120 VPTAIPSEDTRDNFTSHLYSALSQK--SIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKIL  192 (437)
Q Consensus       120 vf~sf~g~d~r~~f~~~l~~~L~~~--g~~~~~-----~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wcl~EL~~il  192 (437)
                      |||||+++|.+..|+++|.++|++.  |+++|+     ..|..+.+++.++|++||++|+|||++|++|.||+.|+..++
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999666689999999999999  999999     689999999999999999999999999999999999999999


Q ss_pred             hhccccC--eEEEeeeecCCCCCCC-CCCCccCCchhhhhhhhhcC--hHHHHHHHHhh
Q 013724          193 QCKRVYG--QIVLPVFYGVDPAPVK-WPTGSYGDSFLKLEERFKEN--SEKLQTWRNAL  246 (437)
Q Consensus       193 ~c~~~~~--~~vlPiFy~VdpS~Vr-~q~gsf~~af~~le~~~~~~--~e~l~~W~~aL  246 (437)
                      ++....+  .+|+|+||++.+.++. .+.+.+...|..........  ......|+..+
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~  139 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLR  139 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHH
T ss_pred             hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHh
Confidence            9986654  8999999999999998 57777776666666554333  45677787654

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.62  E-value=7.8e-16  Score=133.99  Aligned_cols=131  Identities=31%  Similarity=0.495  Sum_probs=106.0

Q ss_pred             CCceeeccCC-CcccCchHHHHHHHHhcCCceEEe---cCCCchHHHHHHHHHhcceEEEEecCccccccccHhhHHhhh
Q 013724          117 YEGVPTAIPS-EDTRDNFTSHLYSALSQKSIETFI---NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKIL  192 (437)
Q Consensus       117 ~~dvf~sf~g-~d~r~~f~~~l~~~L~~~g~~~~~---~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wcl~EL~~il  192 (437)
                      .|||||||++ +|++..|+.+|..+|...|+.+|.   ..|.....+|.++|++|++.|+++|++|..|.||..|+..++
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~   80 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAAL   80 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHHHH
Confidence            4899999999 677889999999999999999999   344444449999999999999999999999999999999998


Q ss_pred             hhccc-cCeEEEeeeecCCCCCCCCCCCccCCchhhhhhhhhcChHHHHHHHHhhhh
Q 013724          193 QCKRV-YGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKE  248 (437)
Q Consensus       193 ~c~~~-~~~~vlPiFy~VdpS~Vr~q~gsf~~af~~le~~~~~~~e~l~~W~~aL~~  248 (437)
                      .+... ..+.++||+++..|..+..+.+.+...+......+...... ..|...+..
T Consensus        81 ~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~  136 (140)
T smart00255       81 ENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYA  136 (140)
T ss_pred             HHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHH
Confidence            87644 66799999999998888888888877776653333233222 567765544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.54  E-value=1.1e-14  Score=164.88  Aligned_cols=176  Identities=20%  Similarity=0.191  Sum_probs=109.6

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMF  322 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~  322 (437)
                      .|+.|++++|...+..+  ..++.+++|++|+|++|.+.+.+|..+ .+++|++|+|++|.+.+.+|. ++++++|+.|+
T Consensus       141 ~L~~L~Ls~n~~~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        141 NLETLDLSNNMLSGEIP--NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             CCCEEECcCCcccccCC--hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            45556665554433222  234556677777777766555666666 667777777777666666665 66677777777


Q ss_pred             eeCCCCc-ccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchh
Q 013724          323 LNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFF  401 (437)
Q Consensus       323 Ls~n~l~-~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~  401 (437)
                      |++|.+. .+|..++++++|++|+|++|...+.+|..++++++|++|++++|...+.+|..+.++++|+.|++.+|... 
T Consensus       219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-  297 (968)
T PLN00113        219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS-  297 (968)
T ss_pred             CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec-
Confidence            7777666 56666777777777777777655666766777777777777777666667777777777777776554322 


Q ss_pred             hccccccCCCcccccccccCCCC
Q 013724          402 VETSAASGDDWKSAFDAAADGPV  424 (437)
Q Consensus       402 ~~~~~~~~~~~~~l~~~~~s~~~  424 (437)
                       ...+.....++.++.+..+++.
T Consensus       298 -~~~p~~~~~l~~L~~L~l~~n~  319 (968)
T PLN00113        298 -GEIPELVIQLQNLEILHLFSNN  319 (968)
T ss_pred             -cCCChhHcCCCCCcEEECCCCc
Confidence             1222333345555555555543

>PLN03210 Resistant to P

Probab=99.54  E-value=6.1e-14  Score=160.87  Aligned_cols=249  Identities=25%  Similarity=0.318  Sum_probs=155.6

Q ss_pred             CceeeccCCCcccCchHHHHHHHHhcCCceEEe-------------cCCCchHHHHHHHHHhcceEEEEecCcccccccc
Q 013724          118 EGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-------------NRGDEISQSLVDAIEASAISLIIFSEGYASSRWF  184 (437)
Q Consensus       118 ~dvf~sf~g~d~r~~f~~~l~~~L~~~g~~~~~-------------~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wc  184 (437)
                      -|+.++|.|++.     +.+...|...++.+..             ..|..-||.|++.+...-+....-.+.-.+..|.
T Consensus       443 l~ia~ff~~~~~-----~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~  517 (1153)
T PLN03210        443 RHIACLFNGEKV-----NDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVD  517 (1153)
T ss_pred             heehhhcCCCCH-----HHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeC
Confidence            356678998877     5566666666654422             3466778888887432211111112334577899


Q ss_pred             HhhHHhhhhhccccCeEEEeeeecCCCCCCCCCCCccCCchhhhhhhhhc----------------ChHHHHHHHHhhhh
Q 013724          185 FDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKE----------------NSEKLQTWRNALKE  248 (437)
Q Consensus       185 l~EL~~il~c~~~~~~~vlPiFy~VdpS~Vr~q~gsf~~af~~le~~~~~----------------~~e~l~~W~~aL~~  248 (437)
                      .+|+..+++.. .+...+..++.+.........   ..++|..+......                -.+.+......|+.
T Consensus       518 ~~di~~vl~~~-~g~~~v~~i~l~~~~~~~~~i---~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~  593 (1153)
T PLN03210        518 AKDICDVLEDN-TGTKKVLGITLDIDEIDELHI---HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRL  593 (1153)
T ss_pred             HHHHHHHHHhC-cccceeeEEEeccCccceeee---cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEE
Confidence            99998888764 455567777665443221111   11333333221100                00111111223444


Q ss_pred             hhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCC-
Q 013724          249 KIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGT-  326 (437)
Q Consensus       249 L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n-  326 (437)
                      |.+.++.. ...  |..+ .+.+|+.|++.+|. +..+|..+ .+++|+.|+|++|..++.+|.++.+++|+.|+|++| 
T Consensus       594 L~~~~~~l-~~l--P~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~  668 (1153)
T PLN03210        594 LRWDKYPL-RCM--PSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCS  668 (1153)
T ss_pred             EEecCCCC-CCC--CCcC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCC
Confidence            55544432 122  2222 35788888888887 77787777 788888888888877888888888888888888875 


Q ss_pred             CCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccch
Q 013724          327 AIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNF  381 (437)
Q Consensus       327 ~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~  381 (437)
                      .+..+|..+++|++|+.|++++|..++.+|..+ ++++|+.|++++|..++.+|.
T Consensus       669 ~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~  722 (1153)
T PLN03210        669 SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD  722 (1153)
T ss_pred             CccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc
Confidence            466888888888888888888888888888765 677888888888776666654

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.53  E-value=1.8e-14  Score=163.15  Aligned_cols=178  Identities=17%  Similarity=0.117  Sum_probs=146.2

Q ss_pred             HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724          244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM  321 (437)
Q Consensus       244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L  321 (437)
                      ..|+.|++++|...+..+  ..+.++++|++|++++|.+.+.+|..+ .+++|+.|+|++|.+.+.+|. ++++++|+.|
T Consensus       164 ~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  241 (968)
T PLN00113        164 SSLKVLDLGGNVLVGKIP--NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL  241 (968)
T ss_pred             CCCCEEECccCcccccCC--hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence            367889999887655443  356789999999999999777888888 899999999999988888887 8999999999


Q ss_pred             EeeCCCCc-ccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccch
Q 013724          322 FLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKF  400 (437)
Q Consensus       322 ~Ls~n~l~-~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~  400 (437)
                      +|++|.+. .+|..++++++|+.|+|++|...+.+|..+.++++|++|++++|...+.+|..+.++++|+.|++.++...
T Consensus       242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~  321 (968)
T PLN00113        242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT  321 (968)
T ss_pred             ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence            99999988 78899999999999999999977889999999999999999999988899999999999999998665432


Q ss_pred             hhccccccCCCcccccccccCCCCC
Q 013724          401 FVETSAASGDDWKSAFDAAADGPVK  425 (437)
Q Consensus       401 ~~~~~~~~~~~~~~l~~~~~s~~~~  425 (437)
                        ...+.....++.++.+..+++.+
T Consensus       322 --~~~~~~~~~l~~L~~L~L~~n~l  344 (968)
T PLN00113        322 --GKIPVALTSLPRLQVLQLWSNKF  344 (968)
T ss_pred             --CcCChhHhcCCCCCEEECcCCCC
Confidence              22233334455666666655544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.34  E-value=5.4e-14  Score=123.56  Aligned_cols=142  Identities=26%  Similarity=0.327  Sum_probs=86.5

Q ss_pred             hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEe
Q 013724          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFL  323 (437)
Q Consensus       246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~L  323 (437)
                      ++.|.++++......+   -+..+.+|++|++.+|+ ++.+|..+ .++.|+.|++.-|. +..+|. |+.++.|+.|||
T Consensus        35 ITrLtLSHNKl~~vpp---nia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   35 ITRLTLSHNKLTVVPP---NIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhcccCceeecCC---cHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhc
Confidence            4455666654432222   34556677777777766 66677666 67777777776654 334454 677777777777


Q ss_pred             eCCCCc--ccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeec
Q 013724          324 NGTAIE--ELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTF  394 (437)
Q Consensus       324 s~n~l~--~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~  394 (437)
                      ++|++.  .+|..|..|+.|+-|+|++|. ...+|..++++++|+.|.+..|. +-++|..++.|+.|+.|.+
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhi  180 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHI  180 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhc
Confidence            766665  456666666666666666655 55666666666666666666644 3356666666666655554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.33  E-value=5.2e-13  Score=136.76  Aligned_cols=159  Identities=18%  Similarity=0.224  Sum_probs=130.1

Q ss_pred             CccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCcccChhhcCCC
Q 013724          263 PSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSSIECLY  339 (437)
Q Consensus       263 ~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~lp~~i~~L~  339 (437)
                      |.-+..+..|++|+|++|+ +.++|..+ .-+++-+|+|++|+ +..+|.  +.+|+.|-+|||++|++..+|+.+..|.
T Consensus        96 P~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~  173 (1255)
T KOG0444|consen   96 PTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLS  173 (1255)
T ss_pred             Cchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHh
Confidence            3345578999999999998 89999998 88899999999975 667776  8889999999999999999999999999


Q ss_pred             CCCEEeccCCCC-------------------------CCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeec
Q 013724          340 KLLHLDLEDCKS-------------------------LKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTF  394 (437)
Q Consensus       340 ~L~~L~L~~n~~-------------------------l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~  394 (437)
                      .|++|.|++|+.                         +..+|.++..|.+|..+|++.| .+..+|+++.++.+|+.|++
T Consensus       174 ~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNL  252 (1255)
T KOG0444|consen  174 MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNL  252 (1255)
T ss_pred             hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheecc
Confidence            999999998852                         1346777888888999999875 47889999999999999998


Q ss_pred             ccccchhhccccccCCCcccccccccCCCCCCc
Q 013724          395 IYVYKFFVETSAASGDDWKSAFDAAADGPVKPS  427 (437)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~  427 (437)
                      ++....   ....+.+.|..+..+..+-+.+..
T Consensus       253 S~N~it---eL~~~~~~W~~lEtLNlSrNQLt~  282 (1255)
T KOG0444|consen  253 SGNKIT---ELNMTEGEWENLETLNLSRNQLTV  282 (1255)
T ss_pred             CcCcee---eeeccHHHHhhhhhhccccchhcc
Confidence            554433   333456678888888877776653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.28  E-value=8.2e-14  Score=122.40  Aligned_cols=153  Identities=22%  Similarity=0.256  Sum_probs=128.1

Q ss_pred             ccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCC-CCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEe
Q 013724          268 HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLP-DISSAANIEEMFLNGTAIEELPSSIECLYKLLHLD  345 (437)
Q Consensus       268 ~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp-~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~  345 (437)
                      .+.+.+.|.|++|+ ++.+|+.+ .+.+|++|++.+|+ +..+| .++.|++|+.|+++-|++..+|..||.++.|+.||
T Consensus        31 ~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld  108 (264)
T KOG0617|consen   31 NMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD  108 (264)
T ss_pred             chhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence            46778889999998 88889888 99999999999876 45555 59999999999999999999999999999999999


Q ss_pred             ccCCCCC-CCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCcccccccccCCCC
Q 013724          346 LEDCKSL-KSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPV  424 (437)
Q Consensus       346 L~~n~~l-~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~  424 (437)
                      |.+|+.. ..+|..+..++.|+.|+|+.|. ...+|..+++|++|+.|.+.+....   ..+....++..++.+.+-|++
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll---~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLL---SLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchh---hCcHHHHHHHHHHHHhcccce
Confidence            9998743 4689989999999999999865 6889999999999999987554433   233344566777888888877


Q ss_pred             CC
Q 013724          425 KP  426 (437)
Q Consensus       425 ~~  426 (437)
                      +.
T Consensus       185 l~  186 (264)
T KOG0617|consen  185 LT  186 (264)
T ss_pred             ee
Confidence            66

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.23  E-value=2.8e-13  Score=138.71  Aligned_cols=111  Identities=20%  Similarity=0.179  Sum_probs=68.6

Q ss_pred             CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCC-CCccchhccCCCCCc
Q 013724          312 ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI-LQRLNFDIWSILPLV  390 (437)
Q Consensus       312 l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~-l~~lP~~l~~L~~L~  390 (437)
                      +.++++|+.|+|++|.|+++-..++...+|++|+|+.|+ ++.||+.+++|+.|+.|.+.+|.. ...||..|++|..|+
T Consensus       241 ly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le  319 (1255)
T KOG0444|consen  241 LYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE  319 (1255)
T ss_pred             HhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence            333444444444444444433333333444444444444 566777777777777777766553 345777777777776


Q ss_pred             eeecccccchhhccccccCCCcccccccccCCCCCC
Q 013724          391 LTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       391 ~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                      .+.   ..+...+..+++...|.+++++..+++++-
T Consensus       320 vf~---aanN~LElVPEglcRC~kL~kL~L~~NrLi  352 (1255)
T KOG0444|consen  320 VFH---AANNKLELVPEGLCRCVKLQKLKLDHNRLI  352 (1255)
T ss_pred             HHH---hhccccccCchhhhhhHHHHHhccccccee
Confidence            654   455566677888888888888888888765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.06  E-value=6.9e-12  Score=123.05  Aligned_cols=150  Identities=25%  Similarity=0.341  Sum_probs=115.8

Q ss_pred             hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEee
Q 013724          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN  324 (437)
Q Consensus       246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls  324 (437)
                      +..+++.++......+  ..+. ++.|++|+...|- ++.+|+.+ .+..|.-|+|..|+ +..+|+|..+..|.+|+++
T Consensus       162 l~~l~~~~n~l~~l~~--~~i~-m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPef~gcs~L~Elh~g  236 (565)
T KOG0472|consen  162 LSKLDLEGNKLKALPE--NHIA-MKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNK-IRFLPEFPGCSLLKELHVG  236 (565)
T ss_pred             HHHhhccccchhhCCH--HHHH-HHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhcc-cccCCCCCccHHHHHHHhc
Confidence            4445555554432221  2233 6778888887776 78888888 88888888888864 6677888888888888888


Q ss_pred             CCCCcccChhhc-CCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhc
Q 013724          325 GTAIEELPSSIE-CLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVE  403 (437)
Q Consensus       325 ~n~l~~lp~~i~-~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~  403 (437)
                      .|.|+-+|.+.. +|.+|.+|||+.|+ +++.|++++.+.+|++||+++|. +..+|..+++| +|+.|.+.+.+...++
T Consensus       237 ~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTiR  313 (565)
T KOG0472|consen  237 ENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTIR  313 (565)
T ss_pred             ccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHHHH
Confidence            888888888765 89999999999988 99999999999999999998754 67899999999 8888887666555444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.03  E-value=2.9e-12  Score=125.62  Aligned_cols=173  Identities=27%  Similarity=0.266  Sum_probs=125.3

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEe
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFL  323 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~L  323 (437)
                      .+..+.++++......+   -+.++..|.+|++++|+ +.++|+.+ .+..++.|+.++|++....++++.+.+|..|+.
T Consensus        46 ~l~~lils~N~l~~l~~---dl~nL~~l~vl~~~~n~-l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLRE---DLKNLACLTVLNVHDNK-LSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDC  121 (565)
T ss_pred             chhhhhhccCchhhccH---hhhcccceeEEEeccch-hhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence            57778888876654433   25568889999999998 77788877 888888888888765444444888888888888


Q ss_pred             eCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhc
Q 013724          324 NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVE  403 (437)
Q Consensus       324 s~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~  403 (437)
                      +.|.+.++|++++.+..|+.|+..+|+ +.++|+.+..+.+|..|++.+|. +..+|...-+++.|+.|+   |+....+
T Consensus       122 s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld---~~~N~L~  196 (565)
T KOG0472|consen  122 SSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLD---CNSNLLE  196 (565)
T ss_pred             cccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcc---cchhhhh
Confidence            888888888888888888888887777 77788888888788778877755 445554444477777766   5555566


Q ss_pred             cccccCCCcccccccccCCCCCC
Q 013724          404 TSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       404 ~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                      ..+.......++..++...+-+.
T Consensus       197 tlP~~lg~l~~L~~LyL~~Nki~  219 (565)
T KOG0472|consen  197 TLPPELGGLESLELLYLRRNKIR  219 (565)
T ss_pred             cCChhhcchhhhHHHHhhhcccc
Confidence            66666666666666665555444

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.01  E-value=1.4e-10  Score=95.29  Aligned_cols=82  Identities=27%  Similarity=0.427  Sum_probs=69.9

Q ss_pred             eeeccCCCcccCchHHHHHHHHhcCCceEEe----cCCCchHHHHHHHHHhcceEEEEecCccccccccHhhHHhhhhhc
Q 013724          120 VPTAIPSEDTRDNFTSHLYSALSQKSIETFI----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCK  195 (437)
Q Consensus       120 vf~sf~g~d~r~~f~~~l~~~L~~~g~~~~~----~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wcl~EL~~il~c~  195 (437)
                      |||||+.+|.  .++..|...|+..|+.+|+    ..|+.+.+.+.++|++|+..|+++|++|..|.||..|+....+  
T Consensus         1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~--   76 (102)
T PF13676_consen    1 VFISYSSEDR--EFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK--   76 (102)
T ss_dssp             EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred             eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence            8999999996  7999999999999999999    6789999999999999999999999999999999999887733  


Q ss_pred             cccCeEEEeeee
Q 013724          196 RVYGQIVLPVFY  207 (437)
Q Consensus       196 ~~~~~~vlPiFy  207 (437)
                        .++.++|+..
T Consensus        77 --~~~~iipv~~   86 (102)
T PF13676_consen   77 --RGKPIIPVRL   86 (102)
T ss_dssp             --TSESEEEEEC
T ss_pred             --CCCEEEEEEE
Confidence              4557999884

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.99  E-value=3.6e-10  Score=102.07  Aligned_cols=130  Identities=23%  Similarity=0.294  Sum_probs=56.5

Q ss_pred             ccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhh-cCCCCCCEEe
Q 013724          268 HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLD  345 (437)
Q Consensus       268 ~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i-~~L~~L~~L~  345 (437)
                      +..+++.|+|.+|. +..+..-- .+.+|+.|+|++|. +..++.+..+++|+.|++++|.|+.+.+.+ ..+++|+.|+
T Consensus        17 n~~~~~~L~L~~n~-I~~Ie~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   17 NPVKLRELNLRGNQ-ISTIENLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             cccccccccccccc-cccccchhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            34578999999998 66664333 57899999999985 556777888999999999999999997666 4699999999


Q ss_pred             ccCCCCCCCCc--cccCCCCCCCEEeeeCCCCCCc---cchhccCCCCCceeecccccch
Q 013724          346 LEDCKSLKSLP--SGLCKLKSLKYLTLNGCSILQR---LNFDIWSILPLVLTTFIYVYKF  400 (437)
Q Consensus       346 L~~n~~l~~LP--~~l~~L~~L~~L~Ls~c~~l~~---lP~~l~~L~~L~~L~~~~~~~~  400 (437)
                      +++|+ +..+-  ..+..+++|+.|+|.+||....   -...+..+++|+.||...+...
T Consensus        95 L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~  153 (175)
T PF14580_consen   95 LSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEE  153 (175)
T ss_dssp             -TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-
T ss_pred             CcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHH
Confidence            99998 65554  3467899999999999986543   2235788999999986544333

>PLN03150 hypothetical protein; Provisional

Probab=98.93  E-value=2.6e-09  Score=115.30  Aligned_cols=110  Identities=21%  Similarity=0.237  Sum_probs=91.7

Q ss_pred             ceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCc-ccChhhcCCCCCCEEecc
Q 013724          271 TLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIE-ELPSSIECLYKLLHLDLE  347 (437)
Q Consensus       271 ~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~L~  347 (437)
                      .++.|+|++|.+.+.+|..+ .+++|+.|+|++|.+.+.+|. ++.+++|+.|+|++|.++ .+|..+++|++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47888999988777888877 889999999999888888886 888999999999999888 788889999999999999


Q ss_pred             CCCCCCCCccccCCC-CCCCEEeeeCCCCCCccc
Q 013724          348 DCKSLKSLPSGLCKL-KSLKYLTLNGCSILQRLN  380 (437)
Q Consensus       348 ~n~~l~~LP~~l~~L-~~L~~L~Ls~c~~l~~lP  380 (437)
                      +|...+.+|..++.+ .++..+++.+|+.+...|
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            998888888887653 467788888887666554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.92  E-value=1.1e-09  Score=112.07  Aligned_cols=178  Identities=20%  Similarity=0.199  Sum_probs=105.5

Q ss_pred             HHHhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC--CCCCCC
Q 013724          242 WRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAAN  317 (437)
Q Consensus       242 W~~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~--l~~l~~  317 (437)
                      ...+|+.|+|+.|.. ..++.+.|. .-.++++|+|++|. ++.+....  .+.+|..|.|+.|. +..+|.  |.+|++
T Consensus       147 ~l~alrslDLSrN~i-s~i~~~sfp-~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~  222 (873)
T KOG4194|consen  147 ALPALRSLDLSRNLI-SEIPKPSFP-AKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPK  222 (873)
T ss_pred             hHhhhhhhhhhhchh-hcccCCCCC-CCCCceEEeecccc-ccccccccccccchheeeecccCc-ccccCHHHhhhcch
Confidence            345788888888654 334444432 23578888888887 66665444  77788888888865 445554  777888


Q ss_pred             CCEEEeeCCCCccc-ChhhcCCCCCCEEeccCCCCCCCCccc-cCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecc
Q 013724          318 IEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFI  395 (437)
Q Consensus       318 L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~L~~n~~l~~LP~~-l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~  395 (437)
                      |+.|+|..|.|..+ -..|..|++|+.|.|..|. +..|-++ |..|.++++|+|..|+...---.++..|+.|+.|+++
T Consensus       223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS  301 (873)
T KOG4194|consen  223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLS  301 (873)
T ss_pred             hhhhhccccceeeehhhhhcCchhhhhhhhhhcC-cccccCcceeeecccceeecccchhhhhhcccccccchhhhhccc
Confidence            88888888887754 3356666666666666665 4444433 4556666666666654332222345556666666543


Q ss_pred             cccchhhccccccCCCcccccccccCCCCCC
Q 013724          396 YVYKFFVETSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                      +....  +....+.+.+.++..++.+.+.+.
T Consensus       302 ~NaI~--rih~d~WsftqkL~~LdLs~N~i~  330 (873)
T KOG4194|consen  302 YNAIQ--RIHIDSWSFTQKLKELDLSSNRIT  330 (873)
T ss_pred             hhhhh--eeecchhhhcccceeEeccccccc
Confidence            32222  222233334455566666665555

>PLN03150 hypothetical protein; Provisional

Probab=98.85  E-value=5.1e-09  Score=113.05  Aligned_cols=103  Identities=28%  Similarity=0.370  Sum_probs=92.4

Q ss_pred             CccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCc-ccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeee
Q 013724          294 FLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLN  371 (437)
Q Consensus       294 ~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls  371 (437)
                      .++.|+|++|.+.+.+|. ++.+++|+.|+|++|.+. .+|..++.|++|+.|+|++|...+.+|..+++|++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            478899999998888887 999999999999999998 899999999999999999999888999999999999999999


Q ss_pred             CCCCCCccchhccCC-CCCceeeccc
Q 013724          372 GCSILQRLNFDIWSI-LPLVLTTFIY  396 (437)
Q Consensus       372 ~c~~l~~lP~~l~~L-~~L~~L~~~~  396 (437)
                      +|...+.+|..++.+ .++..+++.+
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~  524 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTD  524 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecC
Confidence            999999999988764 4556666543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.83  E-value=7e-10  Score=113.51  Aligned_cols=146  Identities=23%  Similarity=0.206  Sum_probs=75.4

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCC-CCCCCCCCCCCEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKR-LPDISSAANIEEM  321 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~-lp~l~~l~~L~~L  321 (437)
                      .+++|+|++|...+. .. ..+..+.+|..|.|+.|. ++.+|...  .|++|+.|+|..|.+-.. .-.|.+|++|+.|
T Consensus       174 ni~~L~La~N~It~l-~~-~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl  250 (873)
T KOG4194|consen  174 NIKKLNLASNRITTL-ET-GHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL  250 (873)
T ss_pred             CceEEeecccccccc-cc-ccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhh
Confidence            456677777654332 22 234456678888888887 66677655  577888888777643211 1124555555555


Q ss_pred             EeeCCCCcccCh-hhcCCCCCCEEeccCCCCCCCCc-cccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeec
Q 013724          322 FLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLP-SGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTF  394 (437)
Q Consensus       322 ~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~  394 (437)
                      .|..|.|..+-+ .|..|.++++|+|..|+ +..+. .++.+|++|+.|++++|.+-.--++.....++|+.|++
T Consensus       251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdL  324 (873)
T KOG4194|consen  251 KLQRNDISKLDDGAFYGLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDL  324 (873)
T ss_pred             hhhhcCcccccCcceeeecccceeecccch-hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEec
Confidence            555555554432 23444455555555444 33322 23444444444444444333333333444444444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.81  E-value=7.1e-10  Score=118.68  Aligned_cols=156  Identities=21%  Similarity=0.258  Sum_probs=112.8

Q ss_pred             CccccccCceEEEeccCCCCCCCcCccC---------------------------CCCCccEEeeeCCCCCC-CCCCCCC
Q 013724          263 PSFSQHLNTLVVLNLRDCKSLKSLPAGI---------------------------HLEFLKELDLSGCSKLK-RLPDISS  314 (437)
Q Consensus       263 ~~~~~~l~~L~~L~Ls~n~~l~~lp~~~---------------------------~l~~L~~L~Ls~n~~~~-~lp~l~~  314 (437)
                      +.+...+..|++|+|..|+ +..+|..+                           .++.|+.|++.+|.+.. .+|.+.+
T Consensus       303 p~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~  381 (1081)
T KOG0618|consen  303 PPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN  381 (1081)
T ss_pred             CCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc
Confidence            4456668899999999988 66666432                           12346667777776554 3566788


Q ss_pred             CCCCCEEEeeCCCCcccCh-hhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceee
Q 013724          315 AANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTT  393 (437)
Q Consensus       315 l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~  393 (437)
                      ..+|+.|+|++|+|.++|. .+.++..|+.|+|++|+ ++.||..+.++..|++|...+| .+..+| .+.+++.|+.++
T Consensus       382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN-~l~~fP-e~~~l~qL~~lD  458 (1081)
T KOG0618|consen  382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSN-QLLSFP-ELAQLPQLKVLD  458 (1081)
T ss_pred             ccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCC-ceeech-hhhhcCcceEEe
Confidence            8888888888888888886 46778888888888888 8888888888888888888764 466788 778888888888


Q ss_pred             cccccchhhccccccCCCcccccccccCCCC
Q 013724          394 FIYVYKFFVETSAASGDDWKSAFDAAADGPV  424 (437)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~  424 (437)
                      + .|+++.....+ ....|+.++.++.+|+.
T Consensus       459 l-S~N~L~~~~l~-~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  459 L-SCNNLSEVTLP-EALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             c-ccchhhhhhhh-hhCCCcccceeeccCCc
Confidence            6 33333222222 23346778888888875

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.75  E-value=1.8e-09  Score=115.65  Aligned_cols=101  Identities=29%  Similarity=0.372  Sum_probs=47.9

Q ss_pred             CceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEec
Q 013724          270 NTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDL  346 (437)
Q Consensus       270 ~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L  346 (437)
                      +.|+.|.+.+|.+....-+-+ .+++|++|+|++|. +..+|+  +.++..|+.|+|+||+++.||..+..+..|++|..
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a  437 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA  437 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence            344455555554333222222 44555555555532 344443  44455555555555555555555555555555555


Q ss_pred             cCCCCCCCCccccCCCCCCCEEeeeCC
Q 013724          347 EDCKSLKSLPSGLCKLKSLKYLTLNGC  373 (437)
Q Consensus       347 ~~n~~l~~LP~~l~~L~~L~~L~Ls~c  373 (437)
                      .+|. +..+| .+.+++.|+.+|++.|
T Consensus       438 hsN~-l~~fP-e~~~l~qL~~lDlS~N  462 (1081)
T KOG0618|consen  438 HSNQ-LLSFP-ELAQLPQLKVLDLSCN  462 (1081)
T ss_pred             cCCc-eeech-hhhhcCcceEEecccc
Confidence            4444 44444 3444555555555443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.72  E-value=1.9e-08  Score=109.75  Aligned_cols=75  Identities=20%  Similarity=0.211  Sum_probs=52.4

Q ss_pred             CCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecc
Q 013724          316 ANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFI  395 (437)
Q Consensus       316 ~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~  395 (437)
                      .+|+.|+|++|.|+.+|..   .++|+.|++++|. +..+|..   ..+|+.|++++|. +..+|..+.++.+|..|++.
T Consensus       382 ~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~-LssIP~l---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        382 SGLKELIVSGNRLTSLPVL---PSELKELMVSGNR-LTSLPML---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLE  453 (788)
T ss_pred             cccceEEecCCcccCCCCc---ccCCCEEEccCCc-CCCCCcc---hhhhhhhhhccCc-ccccChHHhhccCCCeEECC
Confidence            3677777777777777653   3567778888877 6667753   2456777887755 55788888888888888775


Q ss_pred             ccc
Q 013724          396 YVY  398 (437)
Q Consensus       396 ~~~  398 (437)
                      ++.
T Consensus       454 ~N~  456 (788)
T PRK15387        454 GNP  456 (788)
T ss_pred             CCC
Confidence            543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.71  E-value=2e-09  Score=109.99  Aligned_cols=123  Identities=28%  Similarity=0.403  Sum_probs=57.7

Q ss_pred             cccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEe
Q 013724          267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLD  345 (437)
Q Consensus       267 ~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~  345 (437)
                      .++..|++|+|+.|. +..+|..+..--|++|-+++|+ ++.+|+ ++.++.|..|+.+.|.|..+|+.++.|.+|+.|+
T Consensus       118 ~~L~~lt~l~ls~Nq-lS~lp~~lC~lpLkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~  195 (722)
T KOG0532|consen  118 CNLEALTFLDLSSNQ-LSHLPDGLCDLPLKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLN  195 (722)
T ss_pred             hhhhHHHHhhhccch-hhcCChhhhcCcceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHH
Confidence            344445555555554 4444444422224555555433 333333 4444455555555555555555555555555555


Q ss_pred             ccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeec
Q 013724          346 LEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTF  394 (437)
Q Consensus       346 L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~  394 (437)
                      +..|. +..+|+.++.|+ |..||++. +++..||-+|.+|..|++|.+
T Consensus       196 vrRn~-l~~lp~El~~Lp-Li~lDfSc-Nkis~iPv~fr~m~~Lq~l~L  241 (722)
T KOG0532|consen  196 VRRNH-LEDLPEELCSLP-LIRLDFSC-NKISYLPVDFRKMRHLQVLQL  241 (722)
T ss_pred             Hhhhh-hhhCCHHHhCCc-eeeeeccc-Cceeecchhhhhhhhheeeee
Confidence            55544 444444444332 44455543 334445555555555555443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.69  E-value=2.4e-09  Score=101.98  Aligned_cols=132  Identities=27%  Similarity=0.309  Sum_probs=98.3

Q ss_pred             HHHHHHHhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCC
Q 013724          238 KLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAA  316 (437)
Q Consensus       238 ~l~~W~~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~  316 (437)
                      .+..|. +|++++|++|......   ....-+|.++.|+++.|. +..+.....|++|+.|+|++|.+. .+.. -.+|.
T Consensus       279 ~~dTWq-~LtelDLS~N~I~~iD---ESvKL~Pkir~L~lS~N~-i~~v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLG  352 (490)
T KOG1259|consen  279 SADTWQ-ELTELDLSGNLITQID---ESVKLAPKLRRLILSQNR-IRTVQNLAELPQLQLLDLSGNLLA-ECVGWHLKLG  352 (490)
T ss_pred             ecchHh-hhhhccccccchhhhh---hhhhhccceeEEeccccc-eeeehhhhhcccceEeecccchhH-hhhhhHhhhc
Confidence            345676 6889999987553221   223446889999999998 555555338899999999997543 3333 34577


Q ss_pred             CCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCc--cccCCCCCCCEEeeeCCCCCC
Q 013724          317 NIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLP--SGLCKLKSLKYLTLNGCSILQ  377 (437)
Q Consensus       317 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP--~~l~~L~~L~~L~Ls~c~~l~  377 (437)
                      |++.|.|++|.|..+ +.+++|.+|..||+++|+ +..+.  ..|++|+.|++|.|.+|+..+
T Consensus       353 NIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  353 NIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             CEeeeehhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCccc
Confidence            899999999998877 468889999999999988 66664  458999999999999988543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.68  E-value=2.3e-09  Score=105.53  Aligned_cols=84  Identities=24%  Similarity=0.291  Sum_probs=41.3

Q ss_pred             CCccEEeeeCCCCCCC----CCC-CCCCCCCCEEEeeCCCCc-----ccChhhcCCCCCCEEeccCCCCCC----CCccc
Q 013724          293 EFLKELDLSGCSKLKR----LPD-ISSAANIEEMFLNGTAIE-----ELPSSIECLYKLLHLDLEDCKSLK----SLPSG  358 (437)
Q Consensus       293 ~~L~~L~Ls~n~~~~~----lp~-l~~l~~L~~L~Ls~n~l~-----~lp~~i~~L~~L~~L~L~~n~~l~----~LP~~  358 (437)
                      ++|+.|+|++|.+...    ++. +..+++|+.|+|++|.++     .++..+..+++|+.|++++|....    .++..
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            5566666666554421    111 344455666666665555     123334444566666666554211    12233


Q ss_pred             cCCCCCCCEEeeeCCCCC
Q 013724          359 LCKLKSLKYLTLNGCSIL  376 (437)
Q Consensus       359 l~~L~~L~~L~Ls~c~~l  376 (437)
                      +..+++|++|++++|+..
T Consensus       217 ~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         217 LASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             hcccCCCCEEecCCCcCc
Confidence            445555666666665433

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.66  E-value=1e-08  Score=92.56  Aligned_cols=122  Identities=28%  Similarity=0.333  Sum_probs=53.5

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-C-CCCCCCCEEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-I-SSAANIEEMF  322 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l-~~l~~L~~L~  322 (437)
                      .+++|+|.++.......   ....+.+|+.|++++|. +..++..-.++.|+.|++++|.+. .+++ + ..+++|+.|+
T Consensus        20 ~~~~L~L~~n~I~~Ie~---L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTIEN---LGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ----------------S-----TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccccc---hhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence            35678888876543221   22257899999999998 777765448999999999998654 4543 4 3689999999


Q ss_pred             eeCCCCcccC--hhhcCCCCCCEEeccCCCCCCCCcc----ccCCCCCCCEEeeeC
Q 013724          323 LNGTAIEELP--SSIECLYKLLHLDLEDCKSLKSLPS----GLCKLKSLKYLTLNG  372 (437)
Q Consensus       323 Ls~n~l~~lp--~~i~~L~~L~~L~L~~n~~l~~LP~----~l~~L~~L~~L~Ls~  372 (437)
                      |++|+|..+-  ..+..|++|+.|+|.+|+ +...+.    .+..+++|+.||-..
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence            9999998653  467789999999999999 555443    368899999998654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.61  E-value=1.1e-07  Score=103.86  Aligned_cols=162  Identities=21%  Similarity=0.136  Sum_probs=79.5

Q ss_pred             HHHhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEE
Q 013724          242 WRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEM  321 (437)
Q Consensus       242 W~~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L  321 (437)
                      ....|+.|++++|... ..+.     .+++|+.|++++|. +..+|...  ..|+.|++++|.+ ..+|.+  ..+|+.|
T Consensus       280 lp~~L~~L~Ls~N~Lt-~LP~-----~p~~L~~LdLS~N~-L~~Lp~lp--~~L~~L~Ls~N~L-~~LP~l--p~~Lq~L  347 (788)
T PRK15387        280 LPSGLCKLWIFGNQLT-SLPV-----LPPGLQELSVSDNQ-LASLPALP--SELCKLWAYNNQL-TSLPTL--PSGLQEL  347 (788)
T ss_pred             chhhcCEEECcCCccc-cccc-----cccccceeECCCCc-cccCCCCc--ccccccccccCcc-cccccc--ccccceE
Confidence            3345556666665433 2211     13567777777776 44555421  2333444444332 223321  1244444


Q ss_pred             EeeCCCCcccChhhc-----------------CCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhcc
Q 013724          322 FLNGTAIEELPSSIE-----------------CLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIW  384 (437)
Q Consensus       322 ~Ls~n~l~~lp~~i~-----------------~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~  384 (437)
                      +|++|+|+.+|....                 .+.+|+.|+|++|. +..+|..   .++|+.|++++|. +..+|..+ 
T Consensus       348 dLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~-Lt~LP~l---~s~L~~LdLS~N~-LssIP~l~-  421 (788)
T PRK15387        348 SVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR-LTSLPVL---PSELKELMVSGNR-LTSLPMLP-  421 (788)
T ss_pred             ecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCc-ccCCCCc---ccCCCEEEccCCc-CCCCCcch-
Confidence            444444444443111                 12356666666665 5556543   2456677777765 44566433 


Q ss_pred             CCCCCceeecccccchhhccccccCCCcccccccccCCCCCC
Q 013724          385 SILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       385 ~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                        .+|+.|++.++..   ...+.....+..+..+..++|.+.
T Consensus       422 --~~L~~L~Ls~NqL---t~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        422 --SGLLSLSVYRNQL---TRLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             --hhhhhhhhccCcc---cccChHHhhccCCCeEECCCCCCC
Confidence              2344555433322   233444455666777777776655

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.59  E-value=5.6e-09  Score=99.48  Aligned_cols=125  Identities=22%  Similarity=0.223  Sum_probs=103.6

Q ss_pred             cCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEecc
Q 013724          269 LNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLE  347 (437)
Q Consensus       269 l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~  347 (437)
                      ...|+.|+|++|. +..+..++ -++.++.|++++|. +..+..+..|++|..|||++|.++++...-.+|-+.+.|.|.
T Consensus       283 Wq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~-i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  283 WQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNR-IRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             Hhhhhhccccccc-hhhhhhhhhhccceeEEeccccc-eeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence            4568999999998 88888888 77999999999986 445556888999999999999999887766788899999999


Q ss_pred             CCCCCCCCccccCCCCCCCEEeeeCCCCCCccc--hhccCCCCCceeeccccc
Q 013724          348 DCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLN--FDIWSILPLVLTTFIYVY  398 (437)
Q Consensus       348 ~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP--~~l~~L~~L~~L~~~~~~  398 (437)
                      +|. +.++ .++++|-+|..||+++|+ +..+.  ..+++|+.|+.+.+.+.+
T Consensus       361 ~N~-iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  361 QNK-IETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhh-Hhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC
Confidence            988 7777 568899999999999976 44443  468999999988775543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.58  E-value=7.4e-08  Score=105.35  Aligned_cols=74  Identities=19%  Similarity=0.244  Sum_probs=41.5

Q ss_pred             CCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecc
Q 013724          316 ANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFI  395 (437)
Q Consensus       316 ~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~  395 (437)
                      ++|+.|++++|.++.+|..+.  ++|+.|+|++|+ +..+|..+.  ++|+.|+|++|. +..+|..+.  ..|+.|++.
T Consensus       325 ~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~-L~~LP~~lp--~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdLs  396 (754)
T PRK15370        325 PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQ-ITVLPETLP--PTITTLDVSRNA-LTNLPENLP--AALQIMQAS  396 (754)
T ss_pred             ccceeccccCCccccCChhhc--CcccEEECCCCC-CCcCChhhc--CCcCEEECCCCc-CCCCCHhHH--HHHHHHhhc
Confidence            456666666666666655442  466666666665 555665442  466666666654 335665543  245555544


Q ss_pred             cc
Q 013724          396 YV  397 (437)
Q Consensus       396 ~~  397 (437)
                      ++
T Consensus       397 ~N  398 (754)
T PRK15370        397 RN  398 (754)
T ss_pred             cC
Confidence            43

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.57  E-value=3e-08  Score=110.04  Aligned_cols=132  Identities=30%  Similarity=0.338  Sum_probs=105.9

Q ss_pred             ccCceEEEeccCCCC-CCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChhhcCCCCCCE
Q 013724          268 HLNTLVVLNLRDCKS-LKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLH  343 (437)
Q Consensus       268 ~l~~L~~L~Ls~n~~-l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~  343 (437)
                      .++.|+.|-+..|.. +..++..+  .++.|++|||++|...+.+|. ++.|-+|++|+|+++.++.+|..+++|..|.+
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY  622 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence            345788888888852 55566654  899999999999999999998 99999999999999999999999999999999


Q ss_pred             EeccCCCCCCCCccccCCCCCCCEEeeeCCC--CCCccchhccCCCCCceeecccccc
Q 013724          344 LDLEDCKSLKSLPSGLCKLKSLKYLTLNGCS--ILQRLNFDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       344 L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~--~l~~lP~~l~~L~~L~~L~~~~~~~  399 (437)
                      |++..+..+..+|..+..|++|++|.+..-.  .....-..+.+|++|+.+....++.
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~  680 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV  680 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh
Confidence            9999998888888777889999999997643  1222334456667776666544433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.57  E-value=1.4e-07  Score=103.28  Aligned_cols=136  Identities=20%  Similarity=0.227  Sum_probs=79.0

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEe
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFL  323 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~L  323 (437)
                      .++.|++++|... ..+.  .+  +.+|+.|++++|. +..+|..+ ..+|+.|+|++|.+. .+|. +.  .+|+.|+|
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~--~l--~~nL~~L~Ls~N~-LtsLP~~l-~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L  269 (754)
T PRK15370        200 QITTLILDNNELK-SLPE--NL--QGNIKTLYANSNQ-LTSIPATL-PDTIQEMELSINRIT-ELPERLP--SALQSLDL  269 (754)
T ss_pred             CCcEEEecCCCCC-cCCh--hh--ccCCCEEECCCCc-cccCChhh-hccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence            3556666665433 2221  11  2466777777766 55666543 235677777776533 4554 32  36777777


Q ss_pred             eCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccccc
Q 013724          324 NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVY  398 (437)
Q Consensus       324 s~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~  398 (437)
                      ++|+|+.+|..+.  .+|+.|+|++|+ +..+|..+.  ++|+.|++++|. +..+|..+.  .+|+.|++.+|.
T Consensus       270 s~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l~--~sL~~L~Ls~N~  336 (754)
T PRK15370        270 FHNKISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNS-LTALPETLP--PGLKTLEAGENA  336 (754)
T ss_pred             cCCccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCc-cccCCcccc--ccceeccccCCc
Confidence            7777777766543  467777777776 566665442  356777777654 334665433  467777765554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.56  E-value=3e-08  Score=97.60  Aligned_cols=134  Identities=21%  Similarity=0.164  Sum_probs=99.2

Q ss_pred             ccccCceEEEeccCCCCCCCcCccC-CC---CCccEEeeeCCCCCCC----CCC-CCCC-CCCCEEEeeCCCCc-----c
Q 013724          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HL---EFLKELDLSGCSKLKR----LPD-ISSA-ANIEEMFLNGTAIE-----E  330 (437)
Q Consensus       266 ~~~l~~L~~L~Ls~n~~l~~lp~~~-~l---~~L~~L~Ls~n~~~~~----lp~-l~~l-~~L~~L~Ls~n~l~-----~  330 (437)
                      +..+++|+.|++++|.+....+..+ .+   ++|+.|++++|.....    +.. +..+ ++|+.|+|++|.++     .
T Consensus        77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  156 (319)
T cd00116          77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA  156 (319)
T ss_pred             HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence            3457799999999998554444444 33   4499999999876531    122 4556 89999999999988     3


Q ss_pred             cChhhcCCCCCCEEeccCCCCCC----CCccccCCCCCCCEEeeeCCCCCC----ccchhccCCCCCceeecccccc
Q 013724          331 LPSSIECLYKLLHLDLEDCKSLK----SLPSGLCKLKSLKYLTLNGCSILQ----RLNFDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       331 lp~~i~~L~~L~~L~L~~n~~l~----~LP~~l~~L~~L~~L~Ls~c~~l~----~lP~~l~~L~~L~~L~~~~~~~  399 (437)
                      ++..+..+++|+.|++++|...+    .++..+..+++|++|++++|...+    .++..+..+++|+.|++.+|..
T Consensus       157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l  233 (319)
T cd00116         157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL  233 (319)
T ss_pred             HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence            45567788899999999998442    344556677899999999987543    3556677889999999987653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.52  E-value=2e-08  Score=102.85  Aligned_cols=146  Identities=24%  Similarity=0.261  Sum_probs=114.2

Q ss_pred             HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEE
Q 013724          244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMF  322 (437)
Q Consensus       244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~  322 (437)
                      .+|+.++|+.|.+.. .+.  .+..|+ |++|-+++|+ ++.+|..+ .+.+|..|+.+.|.+....+.++.+.+|+.|+
T Consensus       121 ~~lt~l~ls~NqlS~-lp~--~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~  195 (722)
T KOG0532|consen  121 EALTFLDLSSNQLSH-LPD--GLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLN  195 (722)
T ss_pred             hHHHHhhhccchhhc-CCh--hhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHH
Confidence            467788888775542 232  234444 8999999998 89999999 78899999999987665555699999999999


Q ss_pred             eeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCC---Cceeecccc
Q 013724          323 LNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILP---LVLTTFIYV  397 (437)
Q Consensus       323 Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~---L~~L~~~~~  397 (437)
                      +..|++..+|+++.. -.|..||++.|+ +..||-.|.+|+.|++|-|.+|+ +++-|..|...-+   .+.|+...|
T Consensus       196 vrRn~l~~lp~El~~-LpLi~lDfScNk-is~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  196 VRRNHLEDLPEELCS-LPLIRLDFSCNK-ISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             HhhhhhhhCCHHHhC-CceeeeecccCc-eeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence            999999999999884 468999999888 89999999999999999998877 5666766544333   345554445

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.41  E-value=2.4e-07  Score=68.63  Aligned_cols=58  Identities=33%  Similarity=0.561  Sum_probs=37.1

Q ss_pred             CCCCEEEeeCCCCcccCh-hhcCCCCCCEEeccCCCCCCCCc-cccCCCCCCCEEeeeCCC
Q 013724          316 ANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLP-SGLCKLKSLKYLTLNGCS  374 (437)
Q Consensus       316 ~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~  374 (437)
                      ++|++|+|++|+|+.+|. .+..+++|++|++++|. +..+| ..+..+++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence            356666777666666664 45667777777777666 44544 345667777777776664

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.40  E-value=1.3e-07  Score=96.47  Aligned_cols=122  Identities=32%  Similarity=0.417  Sum_probs=52.7

Q ss_pred             ccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEe
Q 013724          268 HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLD  345 (437)
Q Consensus       268 ~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~  345 (437)
                      .+++|+.|++++|. +..+|... .++.|+.|++++|+ +..+|. +..+.+|++|.+++|.+..++..+.++.+|..|.
T Consensus       161 ~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~  238 (394)
T COG4886         161 NLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLE  238 (394)
T ss_pred             ccccccccccCCch-hhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccc
Confidence            34444444444444 34444433 44444444444432 223333 2233334444444444334444444444444444


Q ss_pred             ccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeec
Q 013724          346 LEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTF  394 (437)
Q Consensus       346 L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~  394 (437)
                      +.+|+ +..++..++.+++|++|++++|. +..++. ++.+.+|+.|++
T Consensus       239 l~~n~-~~~~~~~~~~l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~~  284 (394)
T COG4886         239 LSNNK-LEDLPESIGNLSNLETLDLSNNQ-ISSISS-LGSLTNLRELDL  284 (394)
T ss_pred             cCCce-eeeccchhccccccceecccccc-cccccc-ccccCccCEEec
Confidence            44443 33334444555555555555432 333333 444555555543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.30  E-value=4e-07  Score=92.88  Aligned_cols=171  Identities=29%  Similarity=0.311  Sum_probs=119.6

Q ss_pred             hhhhhhcccCcccCCCCCCccccccC-ceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLN-TLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM  321 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~-~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L  321 (437)
                      .++.+++..++.....   .....+. +|+.|++++|. +..+|..+ .+++|+.|++++|+ +..+|. .+.+++|+.|
T Consensus       117 ~l~~L~l~~n~i~~i~---~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L  191 (394)
T COG4886         117 NLTSLDLDNNNITDIP---PLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNL  191 (394)
T ss_pred             ceeEEecCCcccccCc---cccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhhe
Confidence            4556666655443222   2233443 88999999988 77777556 88899999999876 444555 4588889999


Q ss_pred             EeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchh
Q 013724          322 FLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFF  401 (437)
Q Consensus       322 ~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~  401 (437)
                      ++++|.+..+|..++.+..|+.|.+++|. ...++..+.+++++..|.+.+| .+..++..++.+.+|+.|++..+....
T Consensus       192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~~~~l~~l~~L~~s~n~i~~  269 (394)
T COG4886         192 DLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQISS  269 (394)
T ss_pred             eccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCc-eeeeccchhccccccceeccccccccc
Confidence            99999999998888788889999999886 4556667888888888887664 455567788888888888864443332


Q ss_pred             hccccccCCCcccccccccCCCCCC
Q 013724          402 VETSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       402 ~~~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                      ...    ......+..++.+++.+.
T Consensus       270 i~~----~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         270 ISS----LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             ccc----ccccCccCEEeccCcccc
Confidence            222    344556667776665443

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.30  E-value=1.2e-06  Score=88.65  Aligned_cols=88  Identities=25%  Similarity=0.554  Sum_probs=60.6

Q ss_pred             HHHHHHHHhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCC
Q 013724          237 EKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAA  316 (437)
Q Consensus       237 e~l~~W~~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~  316 (437)
                      ..+..| ..++.|+++.|.. ...+  .+   -.+|+.|.+.+|..+..+|..+ ..+|+.|+|++|..+..+|     .
T Consensus        46 ~r~~~~-~~l~~L~Is~c~L-~sLP--~L---P~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP-----~  112 (426)
T PRK15386         46 PQIEEA-RASGRLYIKDCDI-ESLP--VL---PNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLP-----E  112 (426)
T ss_pred             HHHHHh-cCCCEEEeCCCCC-cccC--CC---CCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccc-----c
Confidence            345556 5688899998843 3333  11   2469999999988888888654 4689999999996666665     3


Q ss_pred             CCCEEEeeCCC---CcccChhhcC
Q 013724          317 NIEEMFLNGTA---IEELPSSIEC  337 (437)
Q Consensus       317 ~L~~L~Ls~n~---l~~lp~~i~~  337 (437)
                      +|+.|+|.++.   +..+|+++..
T Consensus       113 sLe~L~L~~n~~~~L~~LPssLk~  136 (426)
T PRK15386        113 SVRSLEIKGSATDSIKNVPNGLTS  136 (426)
T ss_pred             ccceEEeCCCCCcccccCcchHhh
Confidence            57778887755   4466765443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.27  E-value=7.3e-07  Score=66.05  Aligned_cols=57  Identities=30%  Similarity=0.447  Sum_probs=41.1

Q ss_pred             CCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEEeccCCC
Q 013724          293 EFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCK  350 (437)
Q Consensus       293 ~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n~  350 (437)
                      ++|++|+|++|+ +..+|.  |..+++|++|+|++|.|+.+++ .+..+++|++|++++|+
T Consensus         1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            467777777764 334443  7778888888888888887754 66788888888888776

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=9.8e-08  Score=95.18  Aligned_cols=146  Identities=16%  Similarity=0.160  Sum_probs=93.7

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCC-cCccC-CCCCccEEeeeCCCCCCCC-CCCCCCCCCCEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKS-LPAGI-HLEFLKELDLSGCSKLKRL-PDISSAANIEEM  321 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~-lp~~~-~l~~L~~L~Ls~n~~~~~l-p~l~~l~~L~~L  321 (437)
                      .|+.|+|+.|......... ....+++|+.|.|+.|.+... +-... .+++|+.|+|.+|..+... -....+..|+.|
T Consensus       173 ~Le~LNls~Nrl~~~~~s~-~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~L  251 (505)
T KOG3207|consen  173 SLENLNLSSNRLSNFISSN-TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQEL  251 (505)
T ss_pred             cchhcccccccccCCcccc-chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhc
Confidence            5666888777554332221 123577888888988883311 11111 7889999999888532221 124446779999


Q ss_pred             EeeCCCCcccC--hhhcCCCCCCEEeccCCCCCCCC--ccc-----cCCCCCCCEEeeeCCCCCCccc--hhccCCCCCc
Q 013724          322 FLNGTAIEELP--SSIECLYKLLHLDLEDCKSLKSL--PSG-----LCKLKSLKYLTLNGCSILQRLN--FDIWSILPLV  390 (437)
Q Consensus       322 ~Ls~n~l~~lp--~~i~~L~~L~~L~L~~n~~l~~L--P~~-----l~~L~~L~~L~Ls~c~~l~~lP--~~l~~L~~L~  390 (437)
                      +|++|.+..++  ..++.|+.|+.|+++.|. +.++  |+.     ...+++|++|++..|+. ..++  ..+..+.+|+
T Consensus       252 dLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I-~~w~sl~~l~~l~nlk  329 (505)
T KOG3207|consen  252 DLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNI-RDWRSLNHLRTLENLK  329 (505)
T ss_pred             cccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCcc-ccccccchhhccchhh
Confidence            99999888776  567889999999999887 5443  433     35678899999998774 2333  1344445555


Q ss_pred             eee
Q 013724          391 LTT  393 (437)
Q Consensus       391 ~L~  393 (437)
                      .|.
T Consensus       330 ~l~  332 (505)
T KOG3207|consen  330 HLR  332 (505)
T ss_pred             hhh
Confidence            554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.22  E-value=7.9e-07  Score=98.90  Aligned_cols=128  Identities=27%  Similarity=0.326  Sum_probs=105.5

Q ss_pred             cCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCC-CCCCCC--CCCCCCCCEEEeeCC-CCcccChhhcCCCCCCEE
Q 013724          269 LNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSK-LKRLPD--ISSAANIEEMFLNGT-AIEELPSSIECLYKLLHL  344 (437)
Q Consensus       269 l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~-~~~lp~--l~~l~~L~~L~Ls~n-~l~~lp~~i~~L~~L~~L  344 (437)
                      ....+.+.+-+|. +..++.....+.|+.|-+..|.. +..++.  |..|+.|+.|||++| .+.++|..|+.|-+|++|
T Consensus       522 ~~~~rr~s~~~~~-~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  522 WNSVRRMSLMNNK-IEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             hhheeEEEEeccc-hhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            3456667776666 55666666777899999988763 445554  788999999999975 567999999999999999


Q ss_pred             eccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccccc
Q 013724          345 DLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVY  398 (437)
Q Consensus       345 ~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~  398 (437)
                      +++++. +..||.++++|+.|.+|++..+..+..+|..+..|.+|++|.+..-.
T Consensus       601 ~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  601 DLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            999988 88999999999999999999988888888777889999999875443

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.20  E-value=4e-06  Score=84.91  Aligned_cols=115  Identities=31%  Similarity=0.508  Sum_probs=79.2

Q ss_pred             ccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCC-CCcccChhhcCCCCCCEEe
Q 013724          268 HLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGT-AIEELPSSIECLYKLLHLD  345 (437)
Q Consensus       268 ~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n-~l~~lp~~i~~L~~L~~L~  345 (437)
                      .+.+++.|++++|. +..+|.  ...+|+.|.+++|..+..+|+ +  ..+|+.|++++| .+..+|..      |+.|+
T Consensus        50 ~~~~l~~L~Is~c~-L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~  118 (426)
T PRK15386         50 EARASGRLYIKDCD-IESLPV--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLE  118 (426)
T ss_pred             HhcCCCEEEeCCCC-CcccCC--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEE
Confidence            35778899999996 888883  234699999999888888886 4  368999999987 77778764      44455


Q ss_pred             ccCC--CCCCCCccccCCC------------------CCCCEEeeeCCCCCCccchhccCCCCCceeeccc
Q 013724          346 LEDC--KSLKSLPSGLCKL------------------KSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIY  396 (437)
Q Consensus       346 L~~n--~~l~~LP~~l~~L------------------~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~  396 (437)
                      +..+  ..++.+|.++..|                  ++|++|++++|..+ .+|..+.  .+|+.|.+..
T Consensus       119 L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~  186 (426)
T PRK15386        119 IKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI  186 (426)
T ss_pred             eCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence            5443  3366777665444                  37889999988855 3444333  3666666543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=3.3e-07  Score=91.52  Aligned_cols=107  Identities=23%  Similarity=0.297  Sum_probs=43.2

Q ss_pred             cccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCC-CCC-CCCCCCCCEEEeeCCC-CcccChhhcCCCCC
Q 013724          267 QHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKR-LPD-ISSAANIEEMFLNGTA-IEELPSSIECLYKL  341 (437)
Q Consensus       267 ~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~-lp~-l~~l~~L~~L~Ls~n~-l~~lp~~i~~L~~L  341 (437)
                      ..|++|+.|+|+.|.+.-......  .+.+|+.|.|+.|.+... +-. +..+|+|+.|+|..|. +..--.+...+..|
T Consensus       169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L  248 (505)
T KOG3207|consen  169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL  248 (505)
T ss_pred             HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence            344555555555544221111111  344455555555543311 111 2234455555555442 11111122234455


Q ss_pred             CEEeccCCCCCCCCc--cccCCCCCCCEEeeeCCC
Q 013724          342 LHLDLEDCKSLKSLP--SGLCKLKSLKYLTLNGCS  374 (437)
Q Consensus       342 ~~L~L~~n~~l~~LP--~~l~~L~~L~~L~Ls~c~  374 (437)
                      +.|+|++|+ +-.++  ..++.++.|..|+++.|.
T Consensus       249 ~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tg  282 (505)
T KOG3207|consen  249 QELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTG  282 (505)
T ss_pred             hhccccCCc-ccccccccccccccchhhhhccccC
Confidence            555555555 33333  224455555555555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.04  E-value=5.8e-06  Score=57.10  Aligned_cols=40  Identities=28%  Similarity=0.473  Sum_probs=26.4

Q ss_pred             CCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCc
Q 013724          316 ANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLP  356 (437)
Q Consensus       316 ~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP  356 (437)
                      ++|++|+|++|+|+.+|+.+++|++|+.|++++|+ +.++|
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence            35777777777777777667777777777777776 55543

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.98  E-value=5.8e-07  Score=88.75  Aligned_cols=100  Identities=29%  Similarity=0.344  Sum_probs=46.9

Q ss_pred             eEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeC-CCCcccCh-hhcCCCCCCEEec
Q 013724          272 LVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNG-TAIEELPS-SIECLYKLLHLDL  346 (437)
Q Consensus       272 L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~-n~l~~lp~-~i~~L~~L~~L~L  346 (437)
                      -+.++|..|. +..+|+..  .+++|+.|+|++|++...-|+ |.++.+|..|-+.+ |+|+.+|. .|+.|.+|+.|.+
T Consensus        69 tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   69 TVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             ceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            4455555554 55555444  555555555555544443343 55555555554444 55555553 3444444444444


Q ss_pred             cCCCCCCCCccccCCCCCCCEEeeeC
Q 013724          347 EDCKSLKSLPSGLCKLKSLKYLTLNG  372 (437)
Q Consensus       347 ~~n~~l~~LP~~l~~L~~L~~L~Ls~  372 (437)
                      .-|+......+.+..|++|..|.+..
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyD  173 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYD  173 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccc
Confidence            44442222223344444444444433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.96  E-value=4.2e-07  Score=77.66  Aligned_cols=79  Identities=20%  Similarity=0.319  Sum_probs=38.7

Q ss_pred             CceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEec
Q 013724          270 NTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDL  346 (437)
Q Consensus       270 ~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L  346 (437)
                      .+|+..+|++|. +..+|..+  .++.++.|+|++|. +..+|. +..|+.|+.|+++.|.+...|..+..|.+|-.|+.
T Consensus        53 ~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   53 YELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             ceEEEEecccch-hhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence            345555555555 44455444  44455555555543 333343 44455555555555555544444444555555554


Q ss_pred             cCCC
Q 013724          347 EDCK  350 (437)
Q Consensus       347 ~~n~  350 (437)
                      .+|.
T Consensus       131 ~~na  134 (177)
T KOG4579|consen  131 PENA  134 (177)
T ss_pred             CCCc
Confidence            4444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.93  E-value=1.8e-06  Score=85.30  Aligned_cols=137  Identities=19%  Similarity=0.199  Sum_probs=102.8

Q ss_pred             CCCcCccCCCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCccc-ChhhcCCCCCCEEeccCCCCCCCCccc-
Q 013724          283 LKSLPAGIHLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSG-  358 (437)
Q Consensus       283 l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~L~~n~~l~~LP~~-  358 (437)
                      +..+|..+ -+.-..|+|..|. +..+|+  |+.+++|+.|||+.|.|+.| |..|..|.+|..|.+.+|+.++.+|.. 
T Consensus        58 L~eVP~~L-P~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~  135 (498)
T KOG4237|consen   58 LTEVPANL-PPETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA  135 (498)
T ss_pred             cccCcccC-CCcceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence            56677654 2356678888875 566665  99999999999999999987 778999999999999886669999965 


Q ss_pred             cCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCcccccccccCCC
Q 013724          359 LCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGP  423 (437)
Q Consensus       359 l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~  423 (437)
                      |++|.+|+.|.+.-|...-...+.+..|++|..|.+++..  ....++........++.+...-+
T Consensus       136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~--~q~i~~~tf~~l~~i~tlhlA~n  198 (498)
T KOG4237|consen  136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK--IQSICKGTFQGLAAIKTLHLAQN  198 (498)
T ss_pred             hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh--hhhhccccccchhccchHhhhcC
Confidence            7999999999998877665666778999999888875433  33344444555555555444333

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.78  E-value=4.9e-05  Score=69.17  Aligned_cols=124  Identities=21%  Similarity=0.305  Sum_probs=85.5

Q ss_pred             CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcC-CCCCCEEeccCCCCCCCCcc--ccCCCCCCCE
Q 013724          291 HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIEC-LYKLLHLDLEDCKSLKSLPS--GLCKLKSLKY  367 (437)
Q Consensus       291 ~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~-L~~L~~L~L~~n~~l~~LP~--~l~~L~~L~~  367 (437)
                      .+.+...++|++|. +..++.|..++.|.+|.|++|+|+.|.+.+.. +++|..|.|.+|. +..+-+  .+..|+.|++
T Consensus        40 ~~d~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   40 TLDQFDAIDLTDND-LRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEY  117 (233)
T ss_pred             cccccceecccccc-hhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccce
Confidence            45567788888864 55667788888899999999999888766655 5678899988887 555432  3567888999


Q ss_pred             EeeeCCCCCCc---cchhccCCCCCceeecccccchhhc------cccccCCCccccc
Q 013724          368 LTLNGCSILQR---LNFDIWSILPLVLTTFIYVYKFFVE------TSAASGDDWKSAF  416 (437)
Q Consensus       368 L~Ls~c~~l~~---lP~~l~~L~~L~~L~~~~~~~~~~~------~~~~~~~~~~~l~  416 (437)
                      |.+-+|+....   --..+..+++|++|++......-.+      ......+.|+++.
T Consensus       118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER~~A~~~f~~k~~k~~~~~i~  175 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKEREEAEVFFKGKKGKKAAKSIN  175 (233)
T ss_pred             eeecCCchhcccCceeEEEEecCcceEeehhhhhHHHHHHHHHHhccccchhhhhhhh
Confidence            98888874432   2235778889999988654333111      1234455566665

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.75  E-value=1.7e-06  Score=74.09  Aligned_cols=107  Identities=21%  Similarity=0.333  Sum_probs=85.9

Q ss_pred             eEEEeccCCCCCCCcCccC----CCCCccEEeeeCCCCCCCCCC-CC-CCCCCCEEEeeCCCCcccChhhcCCCCCCEEe
Q 013724          272 LVVLNLRDCKSLKSLPAGI----HLEFLKELDLSGCSKLKRLPD-IS-SAANIEEMFLNGTAIEELPSSIECLYKLLHLD  345 (437)
Q Consensus       272 L~~L~Ls~n~~l~~lp~~~----~l~~L~~L~Ls~n~~~~~lp~-l~-~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~  345 (437)
                      +..++|+.|. +..++...    ....|+..+|++|. ...+|. |. ..+.+..|+|++|.|+.+|.++..++.|+.|+
T Consensus        29 ~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccch-hhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence            4567788887 66666554    55678888999975 555665 54 45689999999999999999999999999999


Q ss_pred             ccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchh
Q 013724          346 LEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFD  382 (437)
Q Consensus       346 L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~  382 (437)
                      ++.|+ +...|.-+..|.+|-.|+..+|. ..+||..
T Consensus       107 l~~N~-l~~~p~vi~~L~~l~~Lds~~na-~~eid~d  141 (177)
T KOG4579|consen  107 LRFNP-LNAEPRVIAPLIKLDMLDSPENA-RAEIDVD  141 (177)
T ss_pred             cccCc-cccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence            99999 78888888889999999987754 5667765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=1.8e-06  Score=82.58  Aligned_cols=152  Identities=22%  Similarity=0.243  Sum_probs=91.5

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC---CCCCccEEeeeCCCCCCCCCC--CCC-CCCC
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI---HLEFLKELDLSGCSKLKRLPD--ISS-AANI  318 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~---~l~~L~~L~Ls~n~~~~~lp~--l~~-l~~L  318 (437)
                      .|+.+.|.+...-..+..  .+..-.+|+.|+|+.|..++......   .|+.|..|+|++|......-.  +.+ -++|
T Consensus       211 kLk~lSlEg~~LdD~I~~--~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l  288 (419)
T KOG2120|consen  211 KLKNLSLEGLRLDDPIVN--TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL  288 (419)
T ss_pred             hhhhccccccccCcHHHH--HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence            455555555443322221  23344678888888887555443333   778888888888865543221  222 3567


Q ss_pred             CEEEeeCCC----CcccChhhcCCCCCCEEeccCCCCCCC-CccccCCCCCCCEEeeeCCCCCCccchh---ccCCCCCc
Q 013724          319 EEMFLNGTA----IEELPSSIECLYKLLHLDLEDCKSLKS-LPSGLCKLKSLKYLTLNGCSILQRLNFD---IWSILPLV  390 (437)
Q Consensus       319 ~~L~Ls~n~----l~~lp~~i~~L~~L~~L~L~~n~~l~~-LP~~l~~L~~L~~L~Ls~c~~l~~lP~~---l~~L~~L~  390 (437)
                      ..|+|+|+.    .+.+..-..++++|.+|||++|..++. .-..+.+++.|++|.++.|..+  +|..   +...++|.
T Consensus       289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~  366 (419)
T KOG2120|consen  289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLV  366 (419)
T ss_pred             hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceE
Confidence            888888742    112333346688888888888775544 1234567788888888888633  4443   45667778


Q ss_pred             eeecccccch
Q 013724          391 LTTFIYVYKF  400 (437)
Q Consensus       391 ~L~~~~~~~~  400 (437)
                      +|+..+|..-
T Consensus       367 yLdv~g~vsd  376 (419)
T KOG2120|consen  367 YLDVFGCVSD  376 (419)
T ss_pred             EEEeccccCc
Confidence            8877766443

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.71  E-value=7.8e-05  Score=75.04  Aligned_cols=88  Identities=16%  Similarity=0.271  Sum_probs=69.5

Q ss_pred             CCCCceeeccCCCcccCchHHHHHHHHhcCCceEEe-----cCCCchHHHHHHHHHhcceEEEEecCccc--------cc
Q 013724          115 DSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYA--------SS  181 (437)
Q Consensus       115 ~~~~dvf~sf~g~d~r~~f~~~l~~~L~~~g~~~~~-----~~g~~i~~~l~~~i~~S~~~i~i~S~~~~--------sS  181 (437)
                      .++.|||||||...- +...+.+.-.|+-+|+++||     ..|+.- ..|++.|++.|.+|.|++||..        .-
T Consensus       610 skq~DVFISYRRstG-nQLASLiKV~LQL~GyrVFIDVdKL~AGKFd-ssLlkni~aAkhFiLVLtP~sLDr~lnD~nCe  687 (832)
T KOG3678|consen  610 SKQIDVFISYRRSTG-NQLASLIKVLLQLRGYRVFIDVDKLYAGKFD-SSLLKNIQAAKHFILVLTPNSLDRLLNDDNCE  687 (832)
T ss_pred             cCCcceEEEeecccc-HHHHHHHHHHHHhcCceEEEehhhhhccccc-HHHHHHHHhhheeEEEeCcchHHHHhccccHH
Confidence            457899999985543 45666666667779999999     457765 5899999999999999999974        56


Q ss_pred             cccHhhHHhhhhhccccCeEEEeeeec
Q 013724          182 RWFFDKLVKILQCKRVYGQIVLPVFYG  208 (437)
Q Consensus       182 ~Wcl~EL~~il~c~~~~~~~vlPiFy~  208 (437)
                      .|-+.||+-.++|.+    -|+|||-.
T Consensus       688 DWVHKEl~~Afe~~K----NIiPI~D~  710 (832)
T KOG3678|consen  688 DWVHKELKCAFEHQK----NIIPIFDT  710 (832)
T ss_pred             HHHHHHHHHHHHhcC----Ceeeeecc
Confidence            788888888888753    48888754

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.62  E-value=1.5e-05  Score=79.59  Aligned_cols=183  Identities=20%  Similarity=0.220  Sum_probs=135.9

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC---CCCCccEEeeeCCCCCCCCC--C-CCCCCCC
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI---HLEFLKELDLSGCSKLKRLP--D-ISSAANI  318 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~---~l~~L~~L~Ls~n~~~~~lp--~-l~~l~~L  318 (437)
                      .+.++++..|+.++..........+..|++|..++|..++..+-.-   +..+|++|-|+.|+..+..-  . -.+.+.|
T Consensus       269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L  348 (483)
T KOG4341|consen  269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHL  348 (483)
T ss_pred             HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhh
Confidence            4556677788776655433334567889999999998655433222   78999999999998755432  2 3457899


Q ss_pred             CEEEeeCCCCc---ccChhhcCCCCCCEEeccCCCCCCCC-----ccccCCCCCCCEEeeeCCCCCCc-cchhccCCCCC
Q 013724          319 EEMFLNGTAIE---ELPSSIECLYKLLHLDLEDCKSLKSL-----PSGLCKLKSLKYLTLNGCSILQR-LNFDIWSILPL  389 (437)
Q Consensus       319 ~~L~Ls~n~l~---~lp~~i~~L~~L~~L~L~~n~~l~~L-----P~~l~~L~~L~~L~Ls~c~~l~~-lP~~l~~L~~L  389 (437)
                      +.|++......   ++-..-.+++.|+.|.|+.|..++..     ...-..+..|+.|.|++|+.+.. .-+.+....+|
T Consensus       349 e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L  428 (483)
T KOG4341|consen  349 ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL  428 (483)
T ss_pred             hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccc
Confidence            99999886554   34444467899999999999866554     33346677899999999997654 33456777899


Q ss_pred             ceeecccccchhhccccccCCCcccccccccCCCCCCc
Q 013724          390 VLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKPS  427 (437)
Q Consensus       390 ~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~  427 (437)
                      +.+++++|.....+....-...++.++.....+|+.+.
T Consensus       429 eri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~~t~p  466 (483)
T KOG4341|consen  429 ERIELIDCQDVTKEAISRFATHLPNIKVHAYFAPVTPP  466 (483)
T ss_pred             ceeeeechhhhhhhhhHHHHhhCccceehhhccCCCCc
Confidence            99999999999888887777778888888888888874

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.56  E-value=0.00012  Score=66.66  Aligned_cols=102  Identities=25%  Similarity=0.295  Sum_probs=72.4

Q ss_pred             CceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCC-CCCCCCEEEeeCCCCcccCh--hhcCCCCCCEEec
Q 013724          270 NTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDIS-SAANIEEMFLNGTAIEELPS--SIECLYKLLHLDL  346 (437)
Q Consensus       270 ~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~-~l~~L~~L~Ls~n~l~~lp~--~i~~L~~L~~L~L  346 (437)
                      .+...++|++|. +..++..-.++.|..|.|.+|.++..-|.+. .+++|..|.|.+|+|.++-+  .+..|++|++|.+
T Consensus        42 d~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   42 DQFDAIDLTDND-LRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             cccceecccccc-hhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            355677888887 6555544477888888888877666666644 46778888888888886642  4567788888888


Q ss_pred             cCCCCCCCCcc----ccCCCCCCCEEeeeCC
Q 013724          347 EDCKSLKSLPS----GLCKLKSLKYLTLNGC  373 (437)
Q Consensus       347 ~~n~~l~~LP~----~l~~L~~L~~L~Ls~c  373 (437)
                      -+|+ ....+.    .++.+++|+.||+++-
T Consensus       121 l~Np-v~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  121 LGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence            8887 444432    3678888888888653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.49  E-value=4.3e-05  Score=83.17  Aligned_cols=81  Identities=27%  Similarity=0.339  Sum_probs=39.6

Q ss_pred             CCCCccEEeeeCCCCCC-CCCC-CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCc--cccCCCCCCC
Q 013724          291 HLEFLKELDLSGCSKLK-RLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLP--SGLCKLKSLK  366 (437)
Q Consensus       291 ~l~~L~~L~Ls~n~~~~-~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP--~~l~~L~~L~  366 (437)
                      .||.|+.|.+++-.+.. ++-. ..+++||..||+++++++.+ ..+++|++|+.|.+.+-. ...-.  ..+.+|++|+
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLR  223 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCC-CCchhhHHHHhcccCCC
Confidence            45556655555532211 1122 33455666666666655555 455556666665555433 11111  1245556666


Q ss_pred             EEeeeCC
Q 013724          367 YLTLNGC  373 (437)
Q Consensus       367 ~L~Ls~c  373 (437)
                      .||+|.-
T Consensus       224 vLDIS~~  230 (699)
T KOG3665|consen  224 VLDISRD  230 (699)
T ss_pred             eeecccc
Confidence            6666553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.49  E-value=8.4e-05  Score=51.25  Aligned_cols=40  Identities=33%  Similarity=0.494  Sum_probs=29.6

Q ss_pred             CCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccCh
Q 013724          293 EFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPS  333 (437)
Q Consensus       293 ~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~  333 (437)
                      ++|++|+|++|++. .+|. +.+|++|+.|++++|.|+.+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            46888888887644 5666 8888888888888888887653

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.49  E-value=3.5e-06  Score=88.93  Aligned_cols=103  Identities=33%  Similarity=0.389  Sum_probs=59.6

Q ss_pred             ccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCC-CCCCEEEeeCCCCcccChhhcCCCCCCEEe
Q 013724          268 HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSA-ANIEEMFLNGTAIEELPSSIECLYKLLHLD  345 (437)
Q Consensus       268 ~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l-~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~  345 (437)
                      -++.|+.|+|++|+ ...+- .+ .|+.|++|||++|. +..+|.++.- -+|+.|+|++|.++++- .+.+|.+|+.||
T Consensus       185 ll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN~l~tL~-gie~LksL~~LD  260 (1096)
T KOG1859|consen  185 LLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNNALTTLR-GIENLKSLYGLD  260 (1096)
T ss_pred             HHHHhhhhccchhh-hhhhH-HHHhcccccccccccch-hccccccchhhhhheeeeecccHHHhhh-hHHhhhhhhccc
Confidence            35666777777776 43343 23 66777777777753 4555553321 13777777777766653 466677777777


Q ss_pred             ccCCCCCCCCc--cccCCCCCCCEEeeeCCCC
Q 013724          346 LEDCKSLKSLP--SGLCKLKSLKYLTLNGCSI  375 (437)
Q Consensus       346 L~~n~~l~~LP--~~l~~L~~L~~L~Ls~c~~  375 (437)
                      +++|- +....  .-++.|..|+.|.|.||+.
T Consensus       261 lsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  261 LSYNL-LSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhHhh-hhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            77665 22211  1234556666777777663

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.46  E-value=3.8e-05  Score=79.17  Aligned_cols=105  Identities=30%  Similarity=0.411  Sum_probs=71.7

Q ss_pred             ccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEE
Q 013724          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHL  344 (437)
Q Consensus       266 ~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L  344 (437)
                      +..+.+|+.|++.+|. +..+...+ .+++|++|+|++|. +..+..+..++.|+.|++.+|.|+.+. .+..+++|+.|
T Consensus        91 l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l  167 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLL  167 (414)
T ss_pred             cccccceeeeeccccc-hhhcccchhhhhcchheeccccc-cccccchhhccchhhheeccCcchhcc-CCccchhhhcc
Confidence            3456777888888877 66665534 67788888888764 555566666777888888888877664 34557778888


Q ss_pred             eccCCCCCCCCccc-cCCCCCCCEEeeeCCC
Q 013724          345 DLEDCKSLKSLPSG-LCKLKSLKYLTLNGCS  374 (437)
Q Consensus       345 ~L~~n~~l~~LP~~-l~~L~~L~~L~Ls~c~  374 (437)
                      ++++|. +..++.. +..+.+|+.+.+.+|.
T Consensus       168 ~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  168 DLSYNR-IVDIENDELSELISLEELDLGGNS  197 (414)
T ss_pred             cCCcch-hhhhhhhhhhhccchHHHhccCCc
Confidence            888777 4444432 4666777777777764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=0.00011  Score=70.64  Aligned_cols=152  Identities=16%  Similarity=0.125  Sum_probs=84.9

Q ss_pred             HHhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCcc-CCCCCccEEeeeCCCCCCCC-CC-CCCCCCCC
Q 013724          243 RNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-IHLEFLKELDLSGCSKLKRL-PD-ISSAANIE  319 (437)
Q Consensus       243 ~~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~-~~l~~L~~L~Ls~n~~~~~l-p~-l~~l~~L~  319 (437)
                      ...+++++|.+|.............++|.|++|+|+.|.+...+... ..+.+|++|.|.+..+.... .. +..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            34566677776654433333334567888888888888743332222 25667888887775433221 11 44555556


Q ss_pred             EEEeeCCCCc----------ccChh---------------------------------------------hcCCCCCCEE
Q 013724          320 EMFLNGTAIE----------ELPSS---------------------------------------------IECLYKLLHL  344 (437)
Q Consensus       320 ~L~Ls~n~l~----------~lp~~---------------------------------------------i~~L~~L~~L  344 (437)
                      .|+++.|++.          .+...                                             ...++.+..|
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            6655555322          11100                                             1112333344


Q ss_pred             eccCCCCCCCCc--cccCCCCCCCEEeeeCCCCCCccch------hccCCCCCceeecc
Q 013724          345 DLEDCKSLKSLP--SGLCKLKSLKYLTLNGCSILQRLNF------DIWSILPLVLTTFI  395 (437)
Q Consensus       345 ~L~~n~~l~~LP--~~l~~L~~L~~L~Ls~c~~l~~lP~------~l~~L~~L~~L~~~  395 (437)
                      +|+.|+ +.++.  +.+.+++.|..|.+.+++....+-.      -++.|++++.|+-.
T Consensus       230 nL~~~~-idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  230 NLGANN-IDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             hhcccc-cccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            444444 44432  3467788888888888887665432      36788888888753

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.39  E-value=0.00036  Score=68.40  Aligned_cols=263  Identities=15%  Similarity=0.134  Sum_probs=135.3

Q ss_pred             eeccCCCcccCc---hHHHHHHHHhcCCceEEe-cCCCchH----HHHHHHHH-hcceEEEEecCccccccccHhhHHhh
Q 013724          121 PTAIPSEDTRDN---FTSHLYSALSQKSIETFI-NRGDEIS----QSLVDAIE-ASAISLIIFSEGYASSRWFFDKLVKI  191 (437)
Q Consensus       121 f~sf~g~d~r~~---f~~~l~~~L~~~g~~~~~-~~g~~i~----~~l~~~i~-~S~~~i~i~S~~~~sS~Wcl~EL~~i  191 (437)
                      |+||-|+-...+   -...+.+.+....-.+.+ --|..+.    ..|-+.|. ....-+|-+|.-|+.+.  -+|+...
T Consensus         3 ~~s~~gk~lkl~t~ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~--~~Ei~e~   80 (382)
T KOG1909|consen    3 FFSIGGKSLKLETEEDEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRL--KDEIPEA   80 (382)
T ss_pred             eeccCCeeeeeehHhhhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCc--HHHHHHH
Confidence            456666544333   123455555555555555 2344444    34444443 23455666777776543  2344333


Q ss_pred             hhhccccCeEEEeeeecCCCCCCCCCCCccCCchhhhhhhhhcChHHHHHHHHhhhhhhcccCcccCCCC----------
Q 013724          192 LQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEKIISACNIFTKTP----------  261 (437)
Q Consensus       192 l~c~~~~~~~vlPiFy~VdpS~Vr~q~gsf~~af~~le~~~~~~~e~l~~W~~aL~~L~Ls~~~~~~~~~----------  261 (437)
                      +... ......-|....+|-|+-     .||..+..       ..+.+.+-...|++|.|.+|..-....          
T Consensus        81 L~~l-~~aL~~~~~L~~ldLSDN-----A~G~~g~~-------~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l  147 (382)
T KOG1909|consen   81 LKML-SKALLGCPKLQKLDLSDN-----AFGPKGIR-------GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFEL  147 (382)
T ss_pred             HHHH-HHHHhcCCceeEeecccc-----ccCccchH-------HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHH
Confidence            3321 111122233444555541     22221111       011122224467777777775431100          


Q ss_pred             -CCccccccCceEEEeccCCCCCCCcCccC------CCCCccEEeeeCCCCCCC-C---C-CCCCCCCCCEEEeeCCCCc
Q 013724          262 -NPSFSQHLNTLVVLNLRDCKSLKSLPAGI------HLEFLKELDLSGCSKLKR-L---P-DISSAANIEEMFLNGTAIE  329 (437)
Q Consensus       262 -~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~------~l~~L~~L~Ls~n~~~~~-l---p-~l~~l~~L~~L~Ls~n~l~  329 (437)
                       .......-+.|+++....|. +..-+...      ..+.|+.+.+..|.+-.. .   - .+..+++|+.|||.+|-++
T Consensus       148 ~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  148 AVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             HHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence             00112233678888888877 55544332      456788888887654321 1   1 1667788888888888776


Q ss_pred             -----ccChhhcCCCCCCEEeccCCCCCCC----Ccccc-CCCCCCCEEeeeCCCCCCc----cchhccCCCCCceeecc
Q 013724          330 -----ELPSSIECLYKLLHLDLEDCKSLKS----LPSGL-CKLKSLKYLTLNGCSILQR----LNFDIWSILPLVLTTFI  395 (437)
Q Consensus       330 -----~lp~~i~~L~~L~~L~L~~n~~l~~----LP~~l-~~L~~L~~L~Ls~c~~l~~----lP~~l~~L~~L~~L~~~  395 (437)
                           .+...+..+++|+.|++++|..-..    +-..+ ...++|+.|.+.+|.+...    +...+...+.|..|++.
T Consensus       227 ~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLn  306 (382)
T KOG1909|consen  227 LEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLN  306 (382)
T ss_pred             hHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCC
Confidence                 2334556677788888888762211    11222 3367788888888765432    33455666777777765


Q ss_pred             cccc
Q 013724          396 YVYK  399 (437)
Q Consensus       396 ~~~~  399 (437)
                      .|..
T Consensus       307 gN~l  310 (382)
T KOG1909|consen  307 GNRL  310 (382)
T ss_pred             cccc
Confidence            5443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=3.2e-06  Score=80.87  Aligned_cols=135  Identities=19%  Similarity=0.185  Sum_probs=74.8

Q ss_pred             CccEEeeeCCCCCCC-CCC-CCCCCCCCEEEeeCCCCc-ccChhhcCCCCCCEEeccCCCCCCCCcc--ccCCCCCCCEE
Q 013724          294 FLKELDLSGCSKLKR-LPD-ISSAANIEEMFLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPS--GLCKLKSLKYL  368 (437)
Q Consensus       294 ~L~~L~Ls~n~~~~~-lp~-l~~l~~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~L~~n~~l~~LP~--~l~~L~~L~~L  368 (437)
                      .|++|||+...+... +-. ++.+.+|+.|.|.++.+. .+-..|.+-.+|+.|+|+.|..+++...  .+..|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            355566655432221 111 445556666666666666 4555666666777777777665554322  24566777777


Q ss_pred             eeeCCCCCCccc-hhccCC-CCCceeecccccchhhccccccCCCcccccccccCCCCCCcccccccccCC
Q 013724          369 TLNGCSILQRLN-FDIWSI-LPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKPSQLLSFCIQLS  437 (437)
Q Consensus       369 ~Ls~c~~l~~lP-~~l~~L-~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~~d~s~c~~l~  437 (437)
                      +|++|....+.- ..+... ++|..|++.+|...+...         .+..+...+|.+.++|+|-|..|+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s---------h~~tL~~rcp~l~~LDLSD~v~l~  327 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS---------HLSTLVRRCPNLVHLDLSDSVMLK  327 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh---------HHHHHHHhCCceeeeccccccccC
Confidence            777776554332 112222 456666666665553332         345666666666666766666553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.36  E-value=4e-05  Score=79.02  Aligned_cols=121  Identities=27%  Similarity=0.361  Sum_probs=88.3

Q ss_pred             cCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEec
Q 013724          269 LNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDL  346 (437)
Q Consensus       269 l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L  346 (437)
                      +..+..+++..|. ++.+-..+ .+++|..|++.+|. +..+.. +..+++|++|+|++|.|+.+. .+..|+.|+.|++
T Consensus        71 l~~l~~l~l~~n~-i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   71 LTSLKELNLRQNL-IAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL  147 (414)
T ss_pred             hHhHHhhccchhh-hhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheecccccccccc-chhhccchhhhee
Confidence            4556666677766 44433334 78999999999975 555555 888999999999999999884 4677888999999


Q ss_pred             cCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchh-ccCCCCCceeecc
Q 013724          347 EDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFD-IWSILPLVLTTFI  395 (437)
Q Consensus       347 ~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~-l~~L~~L~~L~~~  395 (437)
                      .+|. +..++ .+..++.|+.+++++|.... +... +..+.+|+.+.+.
T Consensus       148 ~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~  194 (414)
T KOG0531|consen  148 SGNL-ISDIS-GLESLKSLKLLDLSYNRIVD-IENDELSELISLEELDLG  194 (414)
T ss_pred             ccCc-chhcc-CCccchhhhcccCCcchhhh-hhhhhhhhccchHHHhcc
Confidence            9998 77664 36668999999999976443 3321 3555566555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.34  E-value=8.8e-05  Score=69.99  Aligned_cols=62  Identities=27%  Similarity=0.343  Sum_probs=26.6

Q ss_pred             CCCCCCCCEEEeeCC--CCc-ccChhhcCCCCCCEEeccCCCCCCCCc--cccCCCCCCCEEeeeCCC
Q 013724          312 ISSAANIEEMFLNGT--AIE-ELPSSIECLYKLLHLDLEDCKSLKSLP--SGLCKLKSLKYLTLNGCS  374 (437)
Q Consensus       312 l~~l~~L~~L~Ls~n--~l~-~lp~~i~~L~~L~~L~L~~n~~l~~LP--~~l~~L~~L~~L~Ls~c~  374 (437)
                      +..|++|++|.++.|  ++. .++....++++|++|++++|+ +..+-  ..+..+.+|..|++.+|.
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNCS  127 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccCC
Confidence            334445555555544  333 333333444555555555554 22110  113344445555555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.26  E-value=0.00019  Score=67.73  Aligned_cols=105  Identities=29%  Similarity=0.321  Sum_probs=71.4

Q ss_pred             ccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCC--CCCCCCCC-CCCCCCCCEEEeeCCCCccc--ChhhcCCCC
Q 013724          266 SQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGC--SKLKRLPD-ISSAANIEEMFLNGTAIEEL--PSSIECLYK  340 (437)
Q Consensus       266 ~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n--~~~~~lp~-l~~l~~L~~L~Ls~n~l~~l--p~~i~~L~~  340 (437)
                      ...+..|+.|.+.++. ++.+-..-.|++|+.|.++.|  .....++- .-.+++|++|+|++|+|+-+  -..+..+.+
T Consensus        39 ~d~~~~le~ls~~n~g-ltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   39 TDEFVELELLSVINVG-LTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             cccccchhhhhhhccc-eeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence            3346677888888776 444433337889999999988  44555554 45569999999999988742  224667888


Q ss_pred             CCEEeccCCCCCCCCcc----ccCCCCCCCEEeeeC
Q 013724          341 LLHLDLEDCKSLKSLPS----GLCKLKSLKYLTLNG  372 (437)
Q Consensus       341 L~~L~L~~n~~l~~LP~----~l~~L~~L~~L~Ls~  372 (437)
                      |..|++.+|.-.. +-.    .+.-+++|++|+-..
T Consensus       118 L~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  118 LKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhhhcccCCccc-cccHHHHHHHHhhhhccccccc
Confidence            8999999988333 432    245567777776544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.20  E-value=0.00014  Score=71.20  Aligned_cols=179  Identities=18%  Similarity=0.083  Sum_probs=118.9

Q ss_pred             hhhhhhcccCcccCCC--CCCccccccCceEEEeccCCCCCCCcCc--------------cC-CCCCccEEeeeCCCCCC
Q 013724          245 ALKEKIISACNIFTKT--PNPSFSQHLNTLVVLNLRDCKSLKSLPA--------------GI-HLEFLKELDLSGCSKLK  307 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~--~~~~~~~~l~~L~~L~Ls~n~~l~~lp~--------------~~-~l~~L~~L~Ls~n~~~~  307 (437)
                      .|+.++||.|-+-...  ....++.++..|++|.|.+|. ++....              .+ .-+.|+++....|. +.
T Consensus        93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-le  170 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LE  170 (382)
T ss_pred             ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cc
Confidence            4666788877543221  122345567888999999887 543221              11 34678888888864 44


Q ss_pred             CCCC------CCCCCCCCEEEeeCCCCc-----ccChhhcCCCCCCEEeccCCCCCC----CCccccCCCCCCCEEeeeC
Q 013724          308 RLPD------ISSAANIEEMFLNGTAIE-----ELPSSIECLYKLLHLDLEDCKSLK----SLPSGLCKLKSLKYLTLNG  372 (437)
Q Consensus       308 ~lp~------l~~l~~L~~L~Ls~n~l~-----~lp~~i~~L~~L~~L~L~~n~~l~----~LP~~l~~L~~L~~L~Ls~  372 (437)
                      ..+.      +...+.|+.+.+..|.|.     -+...+.++++|++|||.+|.+..    .+-..+..+++|+.|++++
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d  250 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD  250 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence            3331      556788999999988876     234568899999999999998432    2344567788999999999


Q ss_pred             CCCCCccc----hhc-cCCCCCceeecccccchhhccc--cccCCCcccccccccCCCCC
Q 013724          373 CSILQRLN----FDI-WSILPLVLTTFIYVYKFFVETS--AASGDDWKSAFDAAADGPVK  425 (437)
Q Consensus       373 c~~l~~lP----~~l-~~L~~L~~L~~~~~~~~~~~~~--~~~~~~~~~l~~~~~s~~~~  425 (437)
                      |..-..-.    +.+ ...++|++|.+.+|........  .......+.+..+..+++.+
T Consensus       251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            98654422    233 2357899999877766644433  33444466777788888777

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.14  E-value=0.0002  Score=78.09  Aligned_cols=151  Identities=21%  Similarity=0.197  Sum_probs=97.4

Q ss_pred             HHHhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCC-cCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCC
Q 013724          242 WRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKS-LPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIE  319 (437)
Q Consensus       242 W~~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~-lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~  319 (437)
                      -+..|+.|++++.......-.......||.|+.|.+.+-.+... +-... .+++|..||+++++ +..+-.+++|+||+
T Consensus       120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq  198 (699)
T KOG3665|consen  120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQ  198 (699)
T ss_pred             HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHH
Confidence            34578888888754332111112234689999999988553222 11222 89999999999975 55555589999999


Q ss_pred             EEEeeCCCCcccC--hhhcCCCCCCEEeccCCCCCCCC--c----cccCCCCCCCEEeeeCCCCCCccchh-ccCCCCCc
Q 013724          320 EMFLNGTAIEELP--SSIECLYKLLHLDLEDCKSLKSL--P----SGLCKLKSLKYLTLNGCSILQRLNFD-IWSILPLV  390 (437)
Q Consensus       320 ~L~Ls~n~l~~lp--~~i~~L~~L~~L~L~~n~~l~~L--P----~~l~~L~~L~~L~Ls~c~~l~~lP~~-l~~L~~L~  390 (437)
                      .|.+.+=.+..-.  ..+.+|++|++||++.-.....-  .    +.-..|++|+.||.++....+.+-+. +..-++|+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            9999886666322  36788999999999986643321  1    11235889999999986554444333 22334444


Q ss_pred             eee
Q 013724          391 LTT  393 (437)
Q Consensus       391 ~L~  393 (437)
                      .+.
T Consensus       279 ~i~  281 (699)
T KOG3665|consen  279 QIA  281 (699)
T ss_pred             hhh
Confidence            443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.00  E-value=0.00017  Score=69.29  Aligned_cols=128  Identities=21%  Similarity=0.229  Sum_probs=85.3

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC----CCCCccEEeeeCCCCCCCCCCC-CCCCCCC
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI----HLEFLKELDLSGCSKLKRLPDI-SSAANIE  319 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~----~l~~L~~L~Ls~n~~~~~lp~l-~~l~~L~  319 (437)
                      ++.-+.+.+|..-.......+-..++.++.|+|.+|. +..+....    +|+.|+.|+|+.|.+...+..+ ..+.+|+
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence            4455666666544332222334467889999999998 55544332    8999999999999876555443 3567999


Q ss_pred             EEEeeCCCCc--ccChhhcCCCCCCEEeccCCCCCCCC---ccccCCC-CCCCEEeeeCCC
Q 013724          320 EMFLNGTAIE--ELPSSIECLYKLLHLDLEDCKSLKSL---PSGLCKL-KSLKYLTLNGCS  374 (437)
Q Consensus       320 ~L~Ls~n~l~--~lp~~i~~L~~L~~L~L~~n~~l~~L---P~~l~~L-~~L~~L~Ls~c~  374 (437)
                      .|-|.++.+.  .+-..+..++.++.|.++.|. +..+   ...+... +.+.+|++.+|.
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~  184 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCL  184 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcH
Confidence            9999998887  566677889999999998884 2221   1122222 256666666664

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.96  E-value=6.6e-05  Score=79.55  Aligned_cols=107  Identities=21%  Similarity=0.147  Sum_probs=84.5

Q ss_pred             HHHHHHHHhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCCCCC
Q 013724          237 EKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDISS  314 (437)
Q Consensus       237 e~l~~W~~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~l~~  314 (437)
                      +.-.....+++.|+|+.|.....    .++..|++|++|||++|. +..+|..-  .++ |+.|+|++| -+..+-.+.+
T Consensus       180 D~SLqll~ale~LnLshNk~~~v----~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN-~l~tL~gie~  252 (1096)
T KOG1859|consen  180 DESLQLLPALESLNLSHNKFTKV----DNLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNN-ALTTLRGIEN  252 (1096)
T ss_pred             HHHHHHHHHhhhhccchhhhhhh----HHHHhcccccccccccch-hccccccchhhhh-heeeeeccc-HHHhhhhHHh
Confidence            33445566888899998765432    257789999999999998 88888765  555 999999986 4666777889


Q ss_pred             CCCCCEEEeeCCCCcccC--hhhcCCCCCCEEeccCCC
Q 013724          315 AANIEEMFLNGTAIEELP--SSIECLYKLLHLDLEDCK  350 (437)
Q Consensus       315 l~~L~~L~Ls~n~l~~lp--~~i~~L~~L~~L~L~~n~  350 (437)
                      |.+|+.|||++|-|....  .-++.|..|+.|.|.+|.
T Consensus       253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            999999999999887432  246678899999999997

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.87  E-value=4.7e-05  Score=72.45  Aligned_cols=82  Identities=22%  Similarity=0.321  Sum_probs=40.5

Q ss_pred             ceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccCh--hhcCCCCCCEEeccC
Q 013724          271 TLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPS--SIECLYKLLHLDLED  348 (437)
Q Consensus       271 ~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~--~i~~L~~L~~L~L~~  348 (437)
                      +.+.|+..+|. +..+.-...++.|++|.|+-|+ +..+..+..+++|+.|+|..|.|..+.+  -+.+|++|+.|.|..
T Consensus        20 ~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   20 NVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HhhhhcccCCC-ccHHHHHHhcccceeEEeeccc-cccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            33444444444 3333322255555555555543 3333335555555555555555554432  234556666666666


Q ss_pred             CCCCCC
Q 013724          349 CKSLKS  354 (437)
Q Consensus       349 n~~l~~  354 (437)
                      |...+.
T Consensus        98 NPCc~~  103 (388)
T KOG2123|consen   98 NPCCGE  103 (388)
T ss_pred             CCcccc
Confidence            554443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.71  E-value=9.4e-05  Score=70.43  Aligned_cols=101  Identities=23%  Similarity=0.199  Sum_probs=78.8

Q ss_pred             CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCcc--ccCCCCCCCEE
Q 013724          291 HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPS--GLCKLKSLKYL  368 (437)
Q Consensus       291 ~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~--~l~~L~~L~~L  368 (437)
                      .+.+.+.|++-+|. +..+.-..+|+.|+.|.|+-|+|+.+- .+..|++|+.|+|..|. +.+|.+  .+.++++|+.|
T Consensus        17 dl~~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   17 DLENVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHHhhhhcccCCC-ccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhH
Confidence            46678889999985 444444667999999999999999884 58899999999999988 676653  36899999999


Q ss_pred             eeeCCCCCCccch-----hccCCCCCceeec
Q 013724          369 TLNGCSILQRLNF-----DIWSILPLVLTTF  394 (437)
Q Consensus       369 ~Ls~c~~l~~lP~-----~l~~L~~L~~L~~  394 (437)
                      -|..|+=.+.-+.     -+.-|++|+.|+-
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDN  124 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhccC
Confidence            9999886665443     2455666766663

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=96.67  E-value=0.0044  Score=53.22  Aligned_cols=75  Identities=15%  Similarity=0.275  Sum_probs=42.4

Q ss_pred             CceeeccCCCcccCchHHHHHHHHhcC-------CceE--E--------ec-----CCCchHHHHHHHHHhcceEEEEec
Q 013724          118 EGVPTAIPSEDTRDNFTSHLYSALSQK-------SIET--F--------IN-----RGDEISQSLVDAIEASAISLIIFS  175 (437)
Q Consensus       118 ~dvf~sf~g~d~r~~f~~~l~~~L~~~-------g~~~--~--------~~-----~g~~i~~~l~~~i~~S~~~i~i~S  175 (437)
                      |.|||||...|-. ..++.|.+.+...       .+..  +        ..     ..+.|...|.++|..|...||+++
T Consensus         1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            5899999998883 4666677677662       2321  1        11     123788999999999999999999


Q ss_pred             CccccccccHhhHHhhhh
Q 013724          176 EGYASSRWFFDKLVKILQ  193 (437)
Q Consensus       176 ~~~~sS~Wcl~EL~~il~  193 (437)
                      ++-..|.|.-.|+...++
T Consensus        80 ~~T~~s~wV~~EI~~A~~   97 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALK   97 (130)
T ss_dssp             TT----HHHHHHHHHHTT
T ss_pred             CCcccCcHHHHHHHHHHH
Confidence            999999999999998777

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.55  E-value=9.3e-05  Score=73.97  Aligned_cols=23  Identities=17%  Similarity=0.176  Sum_probs=14.2

Q ss_pred             ccccccCCCCCCcccccccccCC
Q 013724          415 AFDAAADGPVKPSQLLSFCIQLS  437 (437)
Q Consensus       415 l~~~~~s~~~~~~~d~s~c~~l~  437 (437)
                      +..++..++.++...+|.|..+|
T Consensus       364 L~sls~~C~~lr~lslshce~it  386 (483)
T KOG4341|consen  364 LASLSRNCPRLRVLSLSHCELIT  386 (483)
T ss_pred             HhhhccCCchhccCChhhhhhhh
Confidence            45566666666666666665543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.16  E-value=0.00068  Score=70.30  Aligned_cols=125  Identities=28%  Similarity=0.373  Sum_probs=68.6

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCC-CCCCCcCc---cC--CCCCccEEeeeCCCCCCCCC--CC-CCC
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDC-KSLKSLPA---GI--HLEFLKELDLSGCSKLKRLP--DI-SSA  315 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n-~~l~~lp~---~~--~l~~L~~L~Ls~n~~~~~lp--~l-~~l  315 (437)
                      .|+.+.+..|..............+++|+.|++++| ......+.   .+  .+.+|+.|++++|..+...-  .+ ..+
T Consensus       189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c  268 (482)
T KOG1947|consen  189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC  268 (482)
T ss_pred             hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence            456666666665554332234456777888888763 22222221   11  56777888888776443222  12 236


Q ss_pred             CCCCEEEeeCCC-Cc--ccChhhcCCCCCCEEeccCCCCCCC--CccccCCCCCCCEEe
Q 013724          316 ANIEEMFLNGTA-IE--ELPSSIECLYKLLHLDLEDCKSLKS--LPSGLCKLKSLKYLT  369 (437)
Q Consensus       316 ~~L~~L~Ls~n~-l~--~lp~~i~~L~~L~~L~L~~n~~l~~--LP~~l~~L~~L~~L~  369 (437)
                      ++|+.|.+.++. ++  .+-.....+++|+.|+|+.|..++.  +.....++++|+.|.
T Consensus       269 ~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~  327 (482)
T KOG1947|consen  269 PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK  327 (482)
T ss_pred             CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence            677777766554 44  3334445677788888877775532  222233445444443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.66  E-value=0.0053  Score=35.54  Aligned_cols=21  Identities=33%  Similarity=0.550  Sum_probs=11.6

Q ss_pred             CCCEEEeeCCCCcccChhhcC
Q 013724          317 NIEEMFLNGTAIEELPSSIEC  337 (437)
Q Consensus       317 ~L~~L~Ls~n~l~~lp~~i~~  337 (437)
                      +|++|+|++|.|+.+|+++++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            355566666655555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.54  E-value=0.047  Score=52.35  Aligned_cols=111  Identities=23%  Similarity=0.232  Sum_probs=60.8

Q ss_pred             cccccCceEEEeccCCCCCCCcCcc--------------C-CCCCccEEeeeCCCCCCCCCC------CCCCCCCCEEEe
Q 013724          265 FSQHLNTLVVLNLRDCKSLKSLPAG--------------I-HLEFLKELDLSGCSKLKRLPD------ISSAANIEEMFL  323 (437)
Q Consensus       265 ~~~~l~~L~~L~Ls~n~~l~~lp~~--------------~-~l~~L~~L~Ls~n~~~~~lp~------l~~l~~L~~L~L  323 (437)
                      ++.+-+.|.+|.|++|. ++.+...              . .-+.|++.....|.+. ..|.      +..-.+|+.+.+
T Consensus       115 ~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki  192 (388)
T COG5238         115 LISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKI  192 (388)
T ss_pred             HHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEe
Confidence            34455667777777766 5543211              0 3355666666665432 2221      222346777777


Q ss_pred             eCCCCc-c-----cChhhcCCCCCCEEeccCCCCCC----CCccccCCCCCCCEEeeeCCCCCC
Q 013724          324 NGTAIE-E-----LPSSIECLYKLLHLDLEDCKSLK----SLPSGLCKLKSLKYLTLNGCSILQ  377 (437)
Q Consensus       324 s~n~l~-~-----lp~~i~~L~~L~~L~L~~n~~l~----~LP~~l~~L~~L~~L~Ls~c~~l~  377 (437)
                      ..|.|. +     +...+..+.+|+.|+|.+|.+.-    .|...++..+.|+.|.+..|-...
T Consensus       193 ~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~  256 (388)
T COG5238         193 QQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN  256 (388)
T ss_pred             eecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence            777765 1     11234566778888887776321    122345556667777777775443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.49  E-value=0.01  Score=61.43  Aligned_cols=127  Identities=27%  Similarity=0.331  Sum_probs=84.5

Q ss_pred             ccCceEEEeccCCCCCCCcC--ccC-CCCCccEEeeeCC-CCCCCCC----C-CCCCCCCCEEEeeCCC-Cccc-Chhh-
Q 013724          268 HLNTLVVLNLRDCKSLKSLP--AGI-HLEFLKELDLSGC-SKLKRLP----D-ISSAANIEEMFLNGTA-IEEL-PSSI-  335 (437)
Q Consensus       268 ~l~~L~~L~Ls~n~~l~~lp--~~~-~l~~L~~L~Ls~n-~~~~~lp----~-l~~l~~L~~L~Ls~n~-l~~l-p~~i-  335 (437)
                      .++.|+.|.+.+|..+....  ... .++.|+.|++++| ......+    . ...+.+|+.|+++.+. ++.. -..+ 
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            46889999999987666532  222 8899999999983 3333333    1 4457899999999876 6522 1223 


Q ss_pred             cCCCCCCEEeccCCCCCCC--CccccCCCCCCCEEeeeCCCCCCc--cchhccCCCCCceeec
Q 013724          336 ECLYKLLHLDLEDCKSLKS--LPSGLCKLKSLKYLTLNGCSILQR--LNFDIWSILPLVLTTF  394 (437)
Q Consensus       336 ~~L~~L~~L~L~~n~~l~~--LP~~l~~L~~L~~L~Ls~c~~l~~--lP~~l~~L~~L~~L~~  394 (437)
                      ..+++|+.|.+.+|..++.  +-.....+++|++|+|++|..+..  +.....+..+|+.|.+
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence            3488999999888885433  223346788999999999987643  3333334444444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.22  E-value=0.18  Score=42.24  Aligned_cols=99  Identities=13%  Similarity=0.268  Sum_probs=48.2

Q ss_pred             ccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCcccCh-hhcCCCC
Q 013724          266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYK  340 (437)
Q Consensus       266 ~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~  340 (437)
                      +..+.+|+.+.+.. . +..++...  .+++|+.+.+..+  +..++.  +.++.+|+.+.+.+ .+..++. .+..+++
T Consensus         8 F~~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    8 FYNCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HhCCCCCCEEEECC-C-eeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            34456777777764 2 45566554  6667888877763  444554  66776778877755 5555543 3455777


Q ss_pred             CCEEeccCCCCCCCCcc-ccCCCCCCCEEeeeC
Q 013724          341 LLHLDLEDCKSLKSLPS-GLCKLKSLKYLTLNG  372 (437)
Q Consensus       341 L~~L~L~~n~~l~~LP~-~l~~L~~L~~L~Ls~  372 (437)
                      |+.+.+..+  +..++. .+.++ +|+.+.+..
T Consensus        83 l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   83 LKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             ECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence            777777543  444443 34555 677666643

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.74  E-value=0.027  Score=32.51  Aligned_cols=18  Identities=44%  Similarity=0.599  Sum_probs=8.3

Q ss_pred             CCEEeccCCCCCCCCcccc
Q 013724          341 LLHLDLEDCKSLKSLPSGL  359 (437)
Q Consensus       341 L~~L~L~~n~~l~~LP~~l  359 (437)
                      |++|+|++|. ++.+|..+
T Consensus         2 L~~Ldls~n~-l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNN-LTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSE-ESEEGTTT
T ss_pred             ccEEECCCCc-CEeCChhh
Confidence            4455555553 33444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.19  E-value=0.061  Score=29.03  Aligned_cols=15  Identities=20%  Similarity=0.386  Sum_probs=5.2

Q ss_pred             CCCEEEeeCCCCccc
Q 013724          317 NIEEMFLNGTAIEEL  331 (437)
Q Consensus       317 ~L~~L~Ls~n~l~~l  331 (437)
                      +|+.|+|++|+|+++
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            344444444444433

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=92.04  E-value=0.24  Score=47.58  Aligned_cols=127  Identities=17%  Similarity=0.156  Sum_probs=89.6

Q ss_pred             ccCceEEEeccCCCCCCCcCccC-----CCCCccEEeeeCCCCCCCCCC---------------CCCCCCCCEEEeeCCC
Q 013724          268 HLNTLVVLNLRDCKSLKSLPAGI-----HLEFLKELDLSGCSKLKRLPD---------------ISSAANIEEMFLNGTA  327 (437)
Q Consensus       268 ~l~~L~~L~Ls~n~~l~~lp~~~-----~l~~L~~L~Ls~n~~~~~lp~---------------l~~l~~L~~L~Ls~n~  327 (437)
                      .||+|+..+|+.|.+-...|..+     .-+.|++|.|++|. ++.+..               ...-|.|+..+...|+
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            47899999999998666666554     66889999999874 443321               3346889999999999


Q ss_pred             CcccChh-----hcCCCCCCEEeccCCCCCCCCcc--------ccCCCCCCCEEeeeCCCCCCc----cchhccCCCCCc
Q 013724          328 IEELPSS-----IECLYKLLHLDLEDCKSLKSLPS--------GLCKLKSLKYLTLNGCSILQR----LNFDIWSILPLV  390 (437)
Q Consensus       328 l~~lp~~-----i~~L~~L~~L~L~~n~~l~~LP~--------~l~~L~~L~~L~Ls~c~~l~~----lP~~l~~L~~L~  390 (437)
                      +...|..     +..-.+|+.+.+..|. +  =|.        ++..+.+|+.|||+.|-....    +...+..-..|+
T Consensus       169 lengs~~~~a~~l~sh~~lk~vki~qNg-I--rpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr  245 (388)
T COG5238         169 LENGSKELSAALLESHENLKEVKIQQNG-I--RPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR  245 (388)
T ss_pred             hccCcHHHHHHHHHhhcCceeEEeeecC-c--CcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence            9866542     2223588888888876 2  233        356788999999999875432    344455556678


Q ss_pred             eeeccccc
Q 013724          391 LTTFIYVY  398 (437)
Q Consensus       391 ~L~~~~~~  398 (437)
                      .|.+-+|-
T Consensus       246 EL~lnDCl  253 (388)
T COG5238         246 ELRLNDCL  253 (388)
T ss_pred             hccccchh
Confidence            88776663

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.02  E-value=0.56  Score=39.19  Aligned_cols=96  Identities=10%  Similarity=0.232  Sum_probs=54.4

Q ss_pred             CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEEeccCCCCCCCCcc-ccCCCCCCC
Q 013724          291 HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPS-GLCKLKSLK  366 (437)
Q Consensus       291 ~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n~~l~~LP~-~l~~L~~L~  366 (437)
                      .+.+|+.+.+..  .+..++.  |.++.+|+.+.+..+ +..++. .+.++.+|+.+.+.+ . +..++. .+..+++|+
T Consensus        10 ~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen   10 NCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             T-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTTTT-TTEC
T ss_pred             CCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-c-cccccccccccccccc
Confidence            667888888875  2445554  788889999999875 777764 567787899999965 2 455554 456789999


Q ss_pred             EEeeeCCCCCCccchh-ccCCCCCceeec
Q 013724          367 YLTLNGCSILQRLNFD-IWSILPLVLTTF  394 (437)
Q Consensus       367 ~L~Ls~c~~l~~lP~~-l~~L~~L~~L~~  394 (437)
                      .+++..+  +..++.. +.+. +|+.+.+
T Consensus        85 ~i~~~~~--~~~i~~~~f~~~-~l~~i~~  110 (129)
T PF13306_consen   85 NIDIPSN--ITEIGSSSFSNC-NLKEINI  110 (129)
T ss_dssp             EEEETTT---BEEHTTTTTT--T--EEE-
T ss_pred             ccccCcc--ccEEchhhhcCC-CceEEEE
Confidence            9998653  5556543 4554 7777765

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=90.70  E-value=0.66  Score=39.51  Aligned_cols=56  Identities=20%  Similarity=0.279  Sum_probs=49.0

Q ss_pred             eeeccCCCcccCchHHHHHHHHhcCCceEEe-----cCCCchHHHHHHHHHhcceEEEEecCcc
Q 013724          120 VPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGY  178 (437)
Q Consensus       120 vf~sf~g~d~r~~f~~~l~~~L~~~g~~~~~-----~~g~~i~~~l~~~i~~S~~~i~i~S~~~  178 (437)
                      |||-|. +|.  .....+...|+..|+.+.+     ..|..|.+.|.++++.+..+|++++++-
T Consensus         2 VFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD   62 (125)
T PF10137_consen    2 VFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDD   62 (125)
T ss_pred             EEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccc
Confidence            899985 776  6778899999988999877     5799999999999999999999999874

Their exact function has not, as yet, been defined.

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.56  E-value=0.17  Score=27.25  Aligned_cols=16  Identities=50%  Similarity=0.754  Sum_probs=6.3

Q ss_pred             CCCEEeccCCCCCCCCc
Q 013724          340 KLLHLDLEDCKSLKSLP  356 (437)
Q Consensus       340 ~L~~L~L~~n~~l~~LP  356 (437)
                      +|+.|+|++|+ ++++|
T Consensus         2 ~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             T-SEEEETSS---SSE-
T ss_pred             ccCEEECCCCC-CCCCc
Confidence            45555555555 44443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.49  E-value=0.057  Score=49.56  Aligned_cols=80  Identities=21%  Similarity=0.219  Sum_probs=50.0

Q ss_pred             CCEEEeeCCCCc-ccChhhcCCCCCCEEeccCCCCCCCCc-ccc-CCCCCCCEEeeeCCCCCCccc-hhccCCCCCceee
Q 013724          318 IEEMFLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLP-SGL-CKLKSLKYLTLNGCSILQRLN-FDIWSILPLVLTT  393 (437)
Q Consensus       318 L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~L~~n~~l~~LP-~~l-~~L~~L~~L~Ls~c~~l~~lP-~~l~~L~~L~~L~  393 (437)
                      ++.++-++..|. +--..+.+++.++.|.+.+|..+...- +.+ +-.++|+.|+|++|+.+++-- ..+.++++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            455555555555 223456677778888888887665432 112 235678888888888766543 4567777777776


Q ss_pred             cccc
Q 013724          394 FIYV  397 (437)
Q Consensus       394 ~~~~  397 (437)
                      +.+.
T Consensus       183 l~~l  186 (221)
T KOG3864|consen  183 LYDL  186 (221)
T ss_pred             hcCc
Confidence            6543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.16  E-value=0.24  Score=29.55  Aligned_cols=20  Identities=25%  Similarity=0.488  Sum_probs=12.3

Q ss_pred             CCCCCEEEeeCCCCcccChh
Q 013724          315 AANIEEMFLNGTAIEELPSS  334 (437)
Q Consensus       315 l~~L~~L~Ls~n~l~~lp~~  334 (437)
                      |++|+.|+|++|.|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            34566666666666666654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.16  E-value=0.24  Score=29.55  Aligned_cols=20  Identities=25%  Similarity=0.488  Sum_probs=12.3

Q ss_pred             CCCCCEEEeeCCCCcccChh
Q 013724          315 AANIEEMFLNGTAIEELPSS  334 (437)
Q Consensus       315 l~~L~~L~Ls~n~l~~lp~~  334 (437)
                      |++|+.|+|++|.|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            34566666666666666654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.84  E-value=0.0082  Score=56.14  Aligned_cols=84  Identities=14%  Similarity=0.063  Sum_probs=50.1

Q ss_pred             CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEee
Q 013724          291 HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTL  370 (437)
Q Consensus       291 ~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~L  370 (437)
                      .+...+.||++.|.....--.++.++.|..|+++.|.+..+|..++.+..+..+++.+|. ...+|.+.+.++.++++++
T Consensus        40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchhhh
Confidence            344555555555443332223555566666666666666666666666666666666555 6666666666666666666


Q ss_pred             eCCCC
Q 013724          371 NGCSI  375 (437)
Q Consensus       371 s~c~~  375 (437)
                      -+++.
T Consensus       119 k~~~~  123 (326)
T KOG0473|consen  119 KKTEF  123 (326)
T ss_pred             ccCcc
Confidence            66553

>smart00370 LRR Leucine-rich repeats, outliers

Probab=83.48  E-value=0.88  Score=27.03  Aligned_cols=20  Identities=50%  Similarity=0.727  Sum_probs=12.0

Q ss_pred             CCCCCEEeccCCCCCCCCccc
Q 013724          338 LYKLLHLDLEDCKSLKSLPSG  358 (437)
Q Consensus       338 L~~L~~L~L~~n~~l~~LP~~  358 (437)
                      |++|+.|+|++|. +..+|..
T Consensus         1 L~~L~~L~L~~N~-l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQ-LSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCc-CCcCCHH
Confidence            3556666666665 6666554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=83.48  E-value=0.88  Score=27.03  Aligned_cols=20  Identities=50%  Similarity=0.727  Sum_probs=12.0

Q ss_pred             CCCCCEEeccCCCCCCCCccc
Q 013724          338 LYKLLHLDLEDCKSLKSLPSG  358 (437)
Q Consensus       338 L~~L~~L~L~~n~~l~~LP~~  358 (437)
                      |++|+.|+|++|. +..+|..
T Consensus         1 L~~L~~L~L~~N~-l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQ-LSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCc-CCcCCHH
Confidence            3556666666665 6666554

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=83.14  E-value=2.5  Score=36.78  Aligned_cols=60  Identities=18%  Similarity=0.258  Sum_probs=46.3

Q ss_pred             ceeeccCCCcccC-chHHHHHHHHhcC-CceEEe---c----CCCchHHHHHHHHHhcceEEEEecCcc
Q 013724          119 GVPTAIPSEDTRD-NFTSHLYSALSQK-SIETFI---N----RGDEISQSLVDAIEASAISLIIFSEGY  178 (437)
Q Consensus       119 dvf~sf~g~d~r~-~f~~~l~~~L~~~-g~~~~~---~----~g~~i~~~l~~~i~~S~~~i~i~S~~~  178 (437)
                      -|||+|.....-+ .-|-.|.+.|++. |+.+.+   +    .+.....=+.++|+++-..|+|.|+.+
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            3899998744422 4477899999998 999988   2    244555667888999999999999765

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=82.92  E-value=0.025  Score=53.01  Aligned_cols=87  Identities=20%  Similarity=0.189  Sum_probs=71.1

Q ss_pred             cccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEE
Q 013724          267 QHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHL  344 (437)
Q Consensus       267 ~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L  344 (437)
                      ..+...+.||++.|. +..+...+ .++.|..|+++.|. +..+|. +..+..+..+++..|.++..|.+++.++.++++
T Consensus        39 ~~~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN  116 (326)
T ss_pred             hccceeeeehhhhhH-HHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence            346788999999998 65666666 77888999999865 555665 888888999999999999999999999999999


Q ss_pred             eccCCCCCCCC
Q 013724          345 DLEDCKSLKSL  355 (437)
Q Consensus       345 ~L~~n~~l~~L  355 (437)
                      ++.++.+...+
T Consensus       117 e~k~~~~~~~~  127 (326)
T KOG0473|consen  117 EQKKTEFFRKL  127 (326)
T ss_pred             hhccCcchHHH
Confidence            99998854444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	437
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		4e-19
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		2e-16
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		2e-07

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 69/124 (55%), Gaps = 7/124 (5%)
Query: 128 DTRDNFTSHLYSALSQKSIETF-----INRGDEISQSLVDAIEASAISLIIFSEGYASSR 182
           DTR NF S LY  L ++SI TF     +  G   S  L   IE S  ++++ SE YA+S 
Sbjct: 19  DTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASS 78
Query: 183 WFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTW 242
           W  D+LV I+  ++     V+P+FYGV+P  V+W TG   + F K   R  E+ EK+  W
Sbjct: 79  WCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKW 136
Query: 243 RNAL 246
           R AL
Sbjct: 137 RQAL 140

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 76/127 (59%), Gaps = 8/127 (6%)
Query: 128 DTRDNFTSHLYSALSQKSIETFIN-----RGDEISQSLVDAIEASAISLIIFSEGYASSR 182
           DTR+ FT  LY +L +  I TF +     +G EI  +L+ AI+ S I + I S GYA S+
Sbjct: 46  DTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSK 105
Query: 183 WFFDKLVKILQCKRVY-GQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQT 241
           W   +L +I++ +     +I+LP+FY VDP+ V+  TG Y  +F K   +F  + + +Q 
Sbjct: 106 WCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQN 163
Query: 242 WRNALKE 248
           W++ALK+
Sbjct: 164 WKDALKK 170

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 69/144 (47%), Gaps = 8/144 (5%)
Query: 244 NALKEKIISACNIFTKTPNPSFS-----QHLNTLVVLNLR-DCKSLKSLPAGI-HLEFLK 296
           N L+E  I AC   T+ P P  S     +H   + + +LR +   ++SLPA I +L+ LK
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLK 209
Query: 297 ELDLSGCSKLKRLPDISSAANIEEMFLNG-TAIEELPSSIECLYKLLHLDLEDCKSLKSL 355
            L +         P I     +EE+ L G TA+   P        L  L L+DC +L +L
Sbjct: 210 SLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269
Query: 356 PSGLCKLKSLKYLTLNGCSILQRL 379
           P  + +L  L+ L L GC  L RL
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRL 293

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	437
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	3e-59
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	6e-56
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	2e-45
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	7e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	1e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-04

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  190 bits (485), Expect = 3e-59
 Identities = 49/135 (36%), Positives = 68/135 (50%), Gaps = 11/135 (8%)

Query: 127 EDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASS 181
            DTR NF S LY  L ++SI TF        G   S  L   IE S  ++++ SE YA+S
Sbjct: 18  HDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAAS 77

Query: 182 RWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQT 241
            W  D+LV I+  ++     V+P+FYGV+P  V+W TG   + F K   R   + EK+  
Sbjct: 78  SWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASRE--DPEKVLK 135

Query: 242 WRNALKEKIISACNI 256
           WR AL         +
Sbjct: 136 WRQALTN----FAQL 146

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  182 bits (465), Expect = 6e-56
 Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 12/136 (8%)

Query: 127 EDTRDNFTSHLYSALSQKSIETFIN-----RGDEISQSLVDAIEASAISLIIFSEGYASS 181
            DTR+ FT  LY +L +  I TF +     +G EI  +L+ AI+ S I + I S GYA S
Sbjct: 45  PDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADS 104

Query: 182 RWFFDKLVKILQCKRVYG-QIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQ 240
           +W   +L +I++ +     +I+LP+FY VDP+ V+  TG Y  +F K   +F  + + +Q
Sbjct: 105 KWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQ 162

Query: 241 TWRNALKEKIISACNI 256
            W++ALK+      ++
Sbjct: 163 NWKDALKK----VGDL 174

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  153 bits (390), Expect = 2e-45
 Identities = 20/126 (15%), Positives = 47/126 (37%), Gaps = 8/126 (6%)

Query: 126 SEDTRDNFTSHLYSALSQKSIETF-----INRGDEISQSLVDAIEASAISLIIFSEGYAS 180
            ED + +F   L   L     E +     +  GD + +S+   + +S   +++ S  +  
Sbjct: 29  WED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFK 87

Query: 181 SRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQ 240
             W   +L  + Q +      +LP+++ V    V   + +  D           + +++ 
Sbjct: 88  KEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTSTK--SVDEIV 145

Query: 241 TWRNAL 246
               A+
Sbjct: 146 ADLMAI 151

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (259), Expect = 6e-25
 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 4/115 (3%)

Query: 268 HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFL-N 324
           +L  L  L +R+   L +L   I HL  L+ELDL GC+ L+  P      A ++ + L +
Sbjct: 204 NLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262

Query: 325 GTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRL 379
            + +  LP  I  L +L  LDL  C +L  LPS + +L +   + +      Q  
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 98.5 bits (246), Expect = 4e-23
 Identities = 33/141 (23%), Positives = 47/141 (33%), Gaps = 13/141 (9%)

Query: 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCS 304
             +           T +          V L LR    L   P     L  L+ + +    
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAA- 114

Query: 305 KLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCK-- 361
            L  LPD +   A +E + L    +  LP+SI  L +L  L +  C  L  LP  L    
Sbjct: 115 GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 362 -------LKSLKYLTLNGCSI 375
                  L +L+ L L    I
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGI 195

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.6 bits (241), Expect = 2e-22
 Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 12/123 (9%)

Query: 268 HLNTLVVLNLRDCKSLKSLPAGI----------HLEFLKELDLSGCSKLKRLPD-ISSAA 316
            LN L  L++R C  L  LP  +           L  L+ L L   + ++ LP  I++  
Sbjct: 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE-WTGIRSLPASIANLQ 206

Query: 317 NIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSIL 376
           N++ + +  + +  L  +I  L KL  LDL  C +L++ P        LK L L  CS L
Sbjct: 207 NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266

Query: 377 QRL 379
             L
Sbjct: 267 LTL 269

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.7 bits (218), Expect = 2e-19
 Identities = 16/114 (14%), Positives = 38/114 (33%), Gaps = 7/114 (6%)

Query: 265 FSQHLNTLVVLNLRDCKSLKSLPAGIH-LEFLKELDLSGCSKLKRLPDISSAANIEEMFL 323
              H +    L  +   +L+     +   +     D +      R  + +   N +    
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN---NPQIETR 63

Query: 324 NGTAIEELPSSIECLY--KLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
            G A++     +E       + L+L     L   P    +L  L+++T++   +
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGL 116

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 6/98 (6%)

Query: 268 HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNG 325
           HL  L  L+LR C +L++ P        LK L L  CS L  LP  I     +E++ L G
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 326 -TAIEELPSSIECLYKLLHLDLEDCKS---LKSLPSGL 359
              +  LPS I  L     + +         +  P   
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 5/52 (9%), Positives = 12/52 (23%)

Query: 328 IEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRL 379
           +              +L  +   +L+     L + +       N      R 
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQ 52

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 69.2 bits (170), Expect = 3e-13
 Identities = 19/147 (12%), Positives = 51/147 (34%), Gaps = 11/147 (7%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI---HLEFLKELDLSGCSKLKRLPD 311
           N  T   +       + +  L+L+  + + ++         + L+ L+L     +  +  
Sbjct: 130 NKITMLRDLDEGC-RSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYN-FIYDVKG 186

Query: 312 ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLN 371
               A ++ + L+   +  +    +    +  + L + K L  +   L   ++L++  L 
Sbjct: 187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLR 245

Query: 372 G----CSILQRLNFDIWSILPLVLTTF 394
           G    C  L+        +  +   T 
Sbjct: 246 GNGFHCGTLRDFFSKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANI 318
               Q+ N   +  + D   LK   A +      +KELDLSG   L ++    ++    +
Sbjct: 3   HEIKQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKL 60

Query: 319 EEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI--- 375
           E + L+   + E    +E L  L  LDL +   ++ L        S++ L     +I   
Sbjct: 61  ELLNLSSNVLYETL-DLESLSTLRTLDLNNNY-VQELLV----GPSIETLHAANNNISRV 114

Query: 376 -------LQRLN 380
                   + + 
Sbjct: 115 SCSRGQGKKNIY 126

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 10/122 (8%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISS 314
           N  ++            L +LNL     L        L  L+ LDL+       + ++  
Sbjct: 44  NPLSQISAADL-APFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNN----YVQELLV 97

Query: 315 AANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNGC 373
             +IE +      I  +  S        ++ L + K +  L          ++YL L   
Sbjct: 98  GPSIETLHAANNNISRVSCSR--GQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN 154

Query: 374 SI 375
            I
Sbjct: 155 EI 156

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 68.3 bits (167), Expect = 1e-12
 Identities = 16/121 (13%), Positives = 45/121 (37%), Gaps = 7/121 (5%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI---HLEFLKELDLSGCSKLKRLPD 311
           N  T   +       + +  L+L+  + + ++         + L+ L+L     +  +  
Sbjct: 130 NKITMLRDLDEGC-RSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYN-FIYDVKG 186

Query: 312 ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLN 371
               A ++ + L+   +  +    +    +  + L + K L  +   L   ++L++  L 
Sbjct: 187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLR 245

Query: 372 G 372
           G
Sbjct: 246 G 246

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 12/114 (10%)

Query: 266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM 321
            Q+ N   +  + D   LK   A +      +KELDLSG   L ++    ++    +E +
Sbjct: 6   KQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELL 63

Query: 322 FLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
            L+   + E    +E L  L  LDL +   ++ L        S++ L     +I
Sbjct: 64  NLSSNVLYETL-DLESLSTLRTLDLNNNY-VQELLV----GPSIETLHAANNNI 111

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 10/122 (8%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISS 314
           N  ++            L +LNL     L        L  L+ LDL+       + ++  
Sbjct: 44  NPLSQISAADL-APFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNN----YVQELLV 97

Query: 315 AANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNGC 373
             +IE +      I  +  S        ++ L + K +  L          ++YL L   
Sbjct: 98  GPSIETLHAANNNISRVSCSR--GQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN 154

Query: 374 SI 375
            I
Sbjct: 155 EI 156

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.1 bits (162), Expect = 7e-12
 Identities = 29/157 (18%), Positives = 65/157 (41%), Gaps = 22/157 (14%)

Query: 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSK 305
             + ++   N+ T T + +    L+ +  L       +KS+    +L  L +++ S   +
Sbjct: 26  KMKTVLGKTNV-TDTVSQT---DLDQVTTLQADRLG-IKSIDGVEYLNNLTQINFSNN-Q 79

Query: 306 LKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSL 365
           L  +  + +   + ++ +N   I ++   +  L  L  L L + + +  +   L  L +L
Sbjct: 80  LTDITPLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQ-ITDIDP-LKNLTNL 136

Query: 366 KYLTLNGCSI-----------LQRLNFD--IWSILPL 389
             L L+  +I           LQ+L+F   +  + PL
Sbjct: 137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPL 173

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 59.6 bits (145), Expect = 7e-10
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGT 326
             L  L  L L + + L+ +    +L+ L  L L     +  +  +SS   ++ +F    
Sbjct: 284 AGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNN 341

Query: 327 AIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
            + ++ S +  L  +  L     + +  L   L  L  +  L LN  + 
Sbjct: 342 KVSDVSS-LANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQAW 387

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 22/128 (17%)

Query: 267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGT 326
           ++LN L  +N  + + L  +    +L  L ++ ++   ++  +  +++  N+  + L   
Sbjct: 65  EYLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNN-QIADITPLANLTNLTGLTLFNN 122

Query: 327 AIEELPSSIECLYKLLHLDL-----------EDCKSLKSL--------PSGLCKLKSLKY 367
            I ++   ++ L  L  L+L               SL+ L           L  L +L+ 
Sbjct: 123 QITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 181

Query: 368 LTLNGCSI 375
           L ++   +
Sbjct: 182 LDISSNKV 189

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 5/109 (4%)

Query: 267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGT 326
             L  L  L L   + + ++     L  L  L+L+   +L+ +  IS+  N+  + L   
Sbjct: 262 SGLTKLTELKLGANQ-ISNISPLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN 319

Query: 327 AIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
            I ++ S +  L KL  L   + K +  + S L  L ++ +L+     I
Sbjct: 320 NISDI-SPVSSLTKLQRLFFYNNK-VSDVSS-LANLTNINWLSAGHNQI 365

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 22/127 (17%)

Query: 268 HLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTA 327
           +L  LV + + + + +  +    +L  L  L L    ++  +  + +  N+  + L+   
Sbjct: 88  NLTKLVDILMNNNQ-IADITPLANLTNLTGLTLFNN-QITDIDPLKNLTNLNRLELSSNT 145

Query: 328 IEELPSSIECLYKLLHLDL----------EDCKSLKSL---------PSGLCKLKSLKYL 368
           I ++ + +  L  L  L             +  +L+ L          S L KL +L+ L
Sbjct: 146 ISDISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 204

Query: 369 TLNGCSI 375
                 I
Sbjct: 205 IATNNQI 211

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.5 bits (137), Expect = 8e-09
 Identities = 20/108 (18%), Positives = 46/108 (42%), Gaps = 6/108 (5%)

Query: 268 HLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTA 327
           +L  L  L L     +  + A   L  L++L     +++  L  +++   +E + ++   
Sbjct: 132 NLTNLNRLELSSNT-ISDISALSGLTSLQQLSFG--NQVTDLKPLANLTTLERLDISSNK 188

Query: 328 IEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
           + ++   +  L  L  L   + + +  +   L  L +L  L+LNG  +
Sbjct: 189 VSDISV-LAKLTNLESLIATNNQ-ISDIT-PLGILTNLDELSLNGNQL 233

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 8e-08
 Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query: 262 NPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEM 321
           + S    L +L  L+  +   +  L    +L  L+ LD+S   K+  +  ++   N+E +
Sbjct: 148 DISALSGLTSLQQLSFGNQ--VTDLKPLANLTTLERLDISSN-KVSDISVLAKLTNLESL 204

Query: 322 FLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
                 I ++   +  L  L  L L   + LK + + L  L +L  L L    I
Sbjct: 205 IATNNQISDITP-LGILTNLDELSLNGNQ-LKDIGT-LASLTNLTDLDLANNQI 255

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 12/81 (14%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 295 LKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKS 354
           L    ++  + + ++   ++ A   +  L  T + +  S    L ++  L  +    +KS
Sbjct: 3   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLG-IKS 60

Query: 355 LPSGLCKLKSLKYLTLNGCSI 375
           +  G+  L +L  +  +   +
Sbjct: 61  I-DGVEYLNNLTQINFSNNQL 80

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.1 bits (161), Expect = 9e-12
 Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 9/119 (7%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGI---HLEFLKELDLSGCSKLKRLPDISSAANIE 319
                    + +  +     L+  PA      +  L  LD     K++ L    +   + 
Sbjct: 541 ADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHN-KVRHLEAFGTNVKLT 598

Query: 320 EMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPS--GLCKLKSLKYLTLNGCSI 375
           ++ L+   IEE+P        ++  L     K LK +P+      +  +  +  +   I
Sbjct: 599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKI 656

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 21/139 (15%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI---------HLEFLKELDLSGCSK 305
           N   K P   F+   + +  + L +   + S+P            +   L  +DL    K
Sbjct: 683 NEIQKFPTELFA-TGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFN-K 739

Query: 306 LKRLPD---ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSL------KSLP 356
           L  L D    ++   +  M ++       P+      +L    +   +        +  P
Sbjct: 740 LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799

Query: 357 SGLCKLKSLKYLTLNGCSI 375
           +G+    SL  L +    I
Sbjct: 800 TGITTCPSLIQLQIGSNDI 818

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 18/129 (13%), Positives = 40/129 (31%), Gaps = 13/129 (10%)

Query: 254 CNIFTKTPNPSFSQHLNTLVVLNLRDCK------SLKSLPAGI-HLEFLKELDLSGCSKL 306
            +   + P     +  +    ++L+D +       +  +   I  L  L+ +  +     
Sbjct: 405 QDAINRNPEMKPIKKDS---RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS-PF 460

Query: 307 KRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLK 366
                     +    +      E    S   L  L  ++L +C ++  LP  L  L  L+
Sbjct: 461 TYDNIAVDWEDANSDYAKQY--ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518

Query: 367 YLTLNGCSI 375
            L +     
Sbjct: 519 SLNIACNRG 527

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 6e-09
 Identities = 19/125 (15%), Positives = 42/125 (33%), Gaps = 16/125 (12%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD---ISSAAN 317
            +F      L  L L   + ++ +P       + ++ L  S   KLK +P+     S   
Sbjct: 589 EAFGT-NVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYV 645

Query: 318 IEEMFLNGTAIEELPSSIEC------LYKLLHLDLEDCKSLKSLPSGLC-KLKSLKYLTL 370
           +  +  +   I     +I C            + L   + ++  P+ L      +  + L
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIIL 704

Query: 371 NGCSI 375
           +   +
Sbjct: 705 SNNLM 709

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 12/124 (9%), Positives = 38/124 (30%), Gaps = 15/124 (12%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEM 321
               Q L  L ++   +          +     ++ +     + +      S+  ++ ++
Sbjct: 441 SKAIQRLTKLQIIYFANSP-FTYDNIAV---DWEDANSDYAKQYENEELSWSNLKDLTDV 496

Query: 322 FL-NGTAIEELPSSIECLYKLLHLDL---------EDCKSLKSLPSGLCKLKSLKYLTLN 371
            L N   + +LP  +  L +L  L++         +       L         ++   + 
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556

Query: 372 GCSI 375
             ++
Sbjct: 557 YNNL 560

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.6 bits (121), Expect = 7e-07
 Identities = 13/125 (10%), Positives = 39/125 (31%), Gaps = 12/125 (9%)

Query: 262 NPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCS------KLKRLPD-ISS 314
              F  +   L + +L    ++   P    ++    + L          ++  +   I  
Sbjct: 388 KKMFLDYDQRLNLSDLL-QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQR 446

Query: 315 AANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCS 374
              ++ ++   +       +++        + +  K  ++       LK L  + L  C 
Sbjct: 447 LTKLQIIYFANSPFTYDNIAVD----WEDANSDYAKQYENEELSWSNLKDLTDVELYNCP 502

Query: 375 ILQRL 379
            + +L
Sbjct: 503 NMTQL 507

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 17/142 (11%), Positives = 34/142 (23%), Gaps = 36/142 (25%)

Query: 268 HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--------------- 311
           +   +  L+L    +   +P  I  L  LK L                            
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRLFGDEELTPDMSEER 379

Query: 312 ------------ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCK------SLK 353
                       +     +    L   AI   P     + K   + L+D +       + 
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP-IKKDSRISLKDTQIGNLTNRIT 438

Query: 354 SLPSGLCKLKSLKYLTLNGCSI 375
            +   + +L  L+ +       
Sbjct: 439 FISKAIQRLTKLQIIYFANSPF 460

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.5 bits (158), Expect = 2e-11
 Identities = 21/132 (15%), Positives = 52/132 (39%), Gaps = 9/132 (6%)

Query: 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSK 305
               ++   ++ T          L ++  L +   K + S+    +L  L+ L+L+G  +
Sbjct: 24  GIRAVLQKASV-TDVVTQE---ELESITKLVVAGEK-VASIQGIEYLTNLEYLNLNGN-Q 77

Query: 306 LKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSL 365
           +  +  +S+   +  +++    I ++ + ++ L  L  L L +   +  +   L  L  +
Sbjct: 78  ITDISPLSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDN-ISDISP-LANLTKM 134

Query: 366 KYLTLNGCSILQ 377
             L L     L 
Sbjct: 135 YSLNLGANHNLS 146

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 5/108 (4%)

Query: 268 HLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTA 327
            L   +   L+    +  +     LE + +L ++G  K+  +  I    N+E + LNG  
Sbjct: 20  DLAEGIRAVLQKAS-VTDVVTQEELESITKLVVAGE-KVASIQGIEYLTNLEYLNLNGNQ 77

Query: 328 IEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
           I ++   +  L KL +L +   K +  + + L  L +L+ L LN  +I
Sbjct: 78  ITDISP-LSNLVKLTNLYIGTNK-ITDISA-LQNLTNLRELYLNEDNI 122

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 5/113 (4%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMF 322
            +    L  L  L L +   +  +    +L  +  L+L     L  L  +S+   +  + 
Sbjct: 104 SALQN-LTNLRELYLNEDN-ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLT 161

Query: 323 LNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
           +  + ++++   I  L  L  L L   + ++ + S L  L SL Y T     I
Sbjct: 162 VTESKVKDVT-PIANLTDLYSLSLNYNQ-IEDI-SPLASLTSLHYFTAYVNQI 211

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 21/108 (19%), Positives = 45/108 (41%), Gaps = 4/108 (3%)

Query: 268 HLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTA 327
           +L  +  LNL    +L  L    ++  L  L ++   K+K +  I++  ++  + LN   
Sbjct: 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTPIANLTDLYSLSLNYNQ 188

Query: 328 IEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
           IE++ S +  L  L +      + +  +   +  +  L  L +    I
Sbjct: 189 IEDI-SPLASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNNKI 233

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 9e-09
 Identities = 18/108 (16%), Positives = 43/108 (39%), Gaps = 3/108 (2%)

Query: 268 HLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTA 327
           ++  L  L + + K +  L    +L  L  L++    ++  +  +     ++ + +    
Sbjct: 219 NMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ 276

Query: 328 IEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
           I ++ S +  L +L  L L + +        +  L +L  L L+   I
Sbjct: 277 ISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.6 bits (135), Expect = 9e-09
 Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 5/110 (4%)

Query: 267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGT 326
            +L+ L  L +   + +  + A   L  LK L++    ++  +  +++ + +  +FLN  
Sbjct: 240 ANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNN 297

Query: 327 AIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
            +       I  L  L  L L     +  +   L  L  +         I
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 295 LKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKS 354
              L     + + ++   +  A      L   ++ ++ +  E L  +  L +   K + S
Sbjct: 2   AATLATLP-APINQIFPDADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEK-VAS 58

Query: 355 LPSGLCKLKSLKYLTLNGCSI 375
           +  G+  L +L+YL LNG  I
Sbjct: 59  IQ-GIEYLTNLEYLNLNGNQI 78

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 9/127 (7%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N        SF  HL  L +L L     ++++  G    L  L  L+L    +L  +P+ 
Sbjct: 74  NQIQIIKVNSFK-HLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN-RLTTIPNG 130

Query: 312 -ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYL 368
                + ++E++L    IE +PS     +  L  LDL + K L  +  G    L +L+YL
Sbjct: 131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190

Query: 369 TLNGCSI 375
            L  C++
Sbjct: 191 NLAMCNL 197

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 14/136 (10%)

Query: 251 ISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLP 310
           +      +     +F + L+ L  LNL  C  L+ +P    L  L ELDLSG   L  + 
Sbjct: 167 LGELKRLSYISEGAF-EGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGN-HLSAIR 223

Query: 311 D--ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSGLCK-LKSLK 366
                   +++++++  + I+ +   + + L  L+ ++L     L  LP  L   L  L+
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLE 282

Query: 367 YLTLNG------CSIL 376
            + L+       C IL
Sbjct: 283 RIHLHHNPWNCNCDIL 298

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 8/126 (6%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N      +  F Q L  L  L + D   L  +       L  L++L L  C  L  +P  
Sbjct: 114 NKIVILLDYMF-QDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKC-NLTSIPTE 170

Query: 312 -ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLT 369
            +S    +  + L    I  +     + LY+L  L++     L ++        +L  L+
Sbjct: 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230

Query: 370 LNGCSI 375
           +  C++
Sbjct: 231 ITHCNL 236

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 17/144 (11%)

Query: 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSG 302
            LK   IS       T  P+    LN L  L++  C  L ++P     HL +L+ L+LS 
Sbjct: 201 RLKVLEISHWPY-LDTMTPNCLYGLN-LTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSY 257

Query: 303 CSKLKRLPD--ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGL 359
            + +  +    +     ++E+ L G  +  +       L  L  L++   + L +L   +
Sbjct: 258 -NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESV 315

Query: 360 CK-LKSLKYLTLNG------CSIL 376
              + +L+ L L+       C +L
Sbjct: 316 FHSVGNLETLILDSNPLACDCRLL 339

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 10/127 (7%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N   + P  +F+   + L  L++     +  L   +   L  LK L+L    +L +L D 
Sbjct: 35  NQLRRLPAANFT-RYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHN-ELSQLSDK 91

Query: 312 -ISSAANIEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYL 368
             +   N+ E+ L   +I+++  +       L+ LDL     L S   G   +L++L+ L
Sbjct: 92  TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQEL 150

Query: 369 TLNGCSI 375
            L+   I
Sbjct: 151 LLSNNKI 157

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 6e-09
 Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 12/130 (9%)

Query: 254 CNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD 311
            N  +K       Q L  L VLNL+  + L  L          L EL L     ++++ +
Sbjct: 58  FNTISKLEPELC-QKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSN-SIQKIKN 114

Query: 312 --ISSAANIEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPS---GLCKLKSL 365
                  N+  + L+   +      +   L  L  L L + K +++L S    +    SL
Sbjct: 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSL 173

Query: 366 KYLTLNGCSI 375
           K L L+   I
Sbjct: 174 KKLELSSNQI 183

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 7e-09
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 11/129 (8%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N  +K  + +FS  L  L VL+L   +  + L       LE + E+ LS   K  +L   
Sbjct: 391 NKISKIESDAFS-WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRN 448

Query: 312 -ISSAANIEEMFLNG---TAIEELPSSIECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLK 366
             +   +++ + L       ++  PS  + L  L  LDL +   + ++    L  L+ L+
Sbjct: 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLE 507

Query: 367 YLTLNGCSI 375
            L L   ++
Sbjct: 508 ILDLQHNNL 516

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 10/129 (7%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           ++ T T     S   + L +LNL   K +  + +     L  L+ LDL    ++ +    
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNK-ISKIESDAFSWLGHLEVLDLGLN-EIGQELTG 423

Query: 312 --ISSAANIEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDCK--SLKSLPSGLCKLKSLK 366
                  NI E++L+     +L  +S   +  L  L L      ++ S PS    L++L 
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483

Query: 367 YLTLNGCSI 375
            L L+  +I
Sbjct: 484 ILDLSNNNI 492

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.5 bits (129), Expect = 8e-08
 Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 17/136 (12%)

Query: 251 ISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKR 308
           +    +     +PS  Q L  L +L+L +   + ++   +   LE L+ LDL     L R
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHN-NLAR 518

Query: 309 LPDISSAANIEEMFLNGTAIEEL-----------PSSIECLYKLLHLDLEDCKSLKSLPS 357
           L   ++           + +  L               + L++L  +DL     L +LP+
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN-LNTLPA 577

Query: 358 G-LCKLKSLKYLTLNG 372
                  SLK L L  
Sbjct: 578 SVFNNQVSLKSLNLQK 593

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 11/136 (8%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCK----SLKSLPAGIHLEFLKELDLSGCSKLKRLP 310
           N   +     F   +  L  L L + +      + L   +    ++ L LS    L    
Sbjct: 181 NQIKEFSPGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-LSTTS 238

Query: 311 DIS----SAANIEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSL 365
           + +       N+  + L+   +  +   S   L +L +  LE           L  L ++
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298

Query: 366 KYLTLNGCSILQRLNF 381
           +YL L      Q ++ 
Sbjct: 299 RYLNLKRSFTKQSISL 314

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 13/131 (9%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCK-SLKSLP----AGIHLEFLKELDLSGCSKLKRL 309
           N      +  F   L  L  L+L +   SL++L       +    L  L+L+   K+ ++
Sbjct: 339 NDIPGIKSNMF-TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-KISKI 396

Query: 310 PD--ISSAANIEEMFLNGTAIEEL--PSSIECLYKLLHLDLEDCKSLKSLPSG-LCKLKS 364
                S   ++E + L    I +         L  +  + L   K    L       + S
Sbjct: 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPS 455

Query: 365 LKYLTLNGCSI 375
           L+ L L   ++
Sbjct: 456 LQRLMLRRVAL 466

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 18/132 (13%)

Query: 260 TPNPSFSQHLNTLVVLNLRDCKSLKSLP----AGIHLEFLKELDLSGCSKLKRLPD--IS 313
           T          ++  L+L +   L +       G+    L  LDLS    L  + +   +
Sbjct: 212 TEKLCLELANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFA 269

Query: 314 SAANIEEMFLNGTAIEEL-PSSIECLYKLLHLDLED--------CKSLKSLPSG-LCKLK 363
               +E  FL    I+ L   S+  L+ + +L+L+           SL  +       LK
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329

Query: 364 SLKYLTLNGCSI 375
            L++L +    I
Sbjct: 330 CLEHLNMEDNDI 341

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 24/126 (19%), Positives = 39/126 (30%), Gaps = 15/126 (11%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMF 322
           P     L  L  +   +   LK LP       L+ +       L+ LP++ +   +  ++
Sbjct: 189 PELQN-LPFLTAIYADNNS-LKKLPDLPLS--LESIVAGNN-ILEELPELQNLPFLTTIY 243

Query: 323 LNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI------L 376
            +   ++ LP     L  L   D      L  LP     L  L         +      L
Sbjct: 244 ADNNLLKTLPDLPPSLEALNVRDN----YLTDLPELPQSLTFLDVSENIFSGLSELPPNL 299

Query: 377 QRLNFD 382
             LN  
Sbjct: 300 YYLNAS 305

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 62.7 bits (153), Expect = 7e-11
 Identities = 25/113 (22%), Positives = 53/113 (46%), Gaps = 12/113 (10%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMF 322
           P   Q L +L+V N      L  LP       L+ L +S   +L++LP++ +++ ++ + 
Sbjct: 107 PELPQSLKSLLVDNNNLKA-LSDLPPL-----LEYLGVSNN-QLEKLPELQNSSFLKIID 159

Query: 323 LNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
           ++  ++++LP        L  +   + + L+ LP  L  L  L  +  +  S+
Sbjct: 160 VDNNSLKKLPDLPP---SLEFIAAGNNQ-LEELPE-LQNLPFLTAIYADNNSL 207

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 27/132 (20%), Positives = 41/132 (31%), Gaps = 25/132 (18%)

Query: 270 NTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISS-------------- 314
           NT +   LR   +L  +P    +++   E   +     +  P  +               
Sbjct: 10  NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 315 AANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCS 374
                E+ LN   +  LP        L  L    C SL  LP     LKSL     N  +
Sbjct: 70  DRQAHELELNNLGLSSLPELPP---HLESLVA-SCNSLTELPELPQSLKSLLVDNNNLKA 125

Query: 375 I------LQRLN 380
           +      L+ L 
Sbjct: 126 LSDLPPLLEYLG 137

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.1 bits (128), Expect = 8e-08
 Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 11/102 (10%)

Query: 264 SFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFL 323
           S      +L  LN+ + K L  LPA      L+ L  S    L  +P      N++++ +
Sbjct: 311 SLCDLPPSLEELNVSNNK-LIELPALPPR--LERLIASFN-HLAEVP--ELPQNLKQLHV 364

Query: 324 NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSL 365
               + E P   E +  L          L  +P     LK L
Sbjct: 365 EYNPLREFPDIPESVEDLRMNS-----HLAEVPELPQNLKQL 401

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 264 SFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFL 323
           +      +L  LN+RD   L  LP     + L  LD+S       L ++    N+  +  
Sbjct: 251 TLPDLPPSLEALNVRDNY-LTDLPELP--QSLTFLDVSENI-FSGLSELPP--NLYYLNA 304

Query: 324 NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLN 371
           +   I  L         L  L++ + K L  LP+   +L+ L   + N
Sbjct: 305 SSNEIRSLCDLPP---SLEELNVSNNK-LIELPALPPRLERL-IASFN 347

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.0 bits (120), Expect = 9e-07
 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 13/103 (12%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMF 322
           P   Q L  L V        L  LP       L  L+ S   +++ L D+    ++EE+ 
Sbjct: 273 PELPQSLTFLDVSENI-FSGLSELPPN-----LYYLNASSN-EIRSLCDLPP--SLEELN 323

Query: 323 LNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSL 365
           ++   + ELP+      +L  L       L  +P     LK L
Sbjct: 324 VSNNKLIELPALPP---RLERLIASFNH-LAEVPELPQNLKQL 362

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 2/73 (2%)

Query: 310 PDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLT 369
           P   S   ++E   + + + E+P   E +           +  ++ P G  + + +    
Sbjct: 5   PRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 370 LNGCSI--LQRLN 380
           L  C       L 
Sbjct: 65  LRDCLDRQAHELE 77

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 15/114 (13%), Positives = 38/114 (33%), Gaps = 10/114 (8%)

Query: 264 SFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFL 323
              +    L  L++     L+  P     E +++L ++  S L  +P++    N++++ +
Sbjct: 351 EVPELPQNLKQLHVEYNP-LREFPDIP--ESVEDLRMN--SHLAEVPELPQ--NLKQLHV 403

Query: 324 NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQ 377
               + E P   E    +  L +   + +            L+           
Sbjct: 404 ETNPLREFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHHH 454

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.9 bits (153), Expect = 5e-11
 Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 8/128 (6%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
                    +FS     L  + +     L+ + A +  +L  L E+ +   + L  +   
Sbjct: 40  TKLRVIQKGAFS-GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98

Query: 312 -ISSAANIEEMFLNGTAIEELPSSIEC-LYKLLHLDLEDCKSLKSLPSG-LCKLKS-LKY 367
              +  N++ + ++ T I+ LP   +    + + LD++D  ++ ++       L      
Sbjct: 99  AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158

Query: 368 LTLNGCSI 375
           L LN   I
Sbjct: 159 LWLNKNGI 166

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.7 bits (129), Expect = 5e-08
 Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 8/137 (5%)

Query: 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG--IHLEFLKELDLSG 302
            L E  I   N        +F Q+L  L  L + +   +K LP    IH      LD+  
Sbjct: 80  KLHEIRIEKANNLLYINPEAF-QNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQD 137

Query: 303 CSKLKRLPDISSA---ANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSG- 358
              +  +   S          ++LN   I+E+ +S     +L  L+L D  +L+ LP+  
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV 197

Query: 359 LCKLKSLKYLTLNGCSI 375
                    L ++   I
Sbjct: 198 FHGASGPVILDISRTRI 214

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 20/113 (17%), Positives = 46/113 (40%), Gaps = 11/113 (9%)

Query: 279 DC--KSLKSLPAGIHLEFLKELDLSGCSKLKRLP--DISSAANIEEMFLNGTAIEEL--P 332
            C    +  +P+ +      EL     +KL+ +     S   ++E++ ++   + E+   
Sbjct: 15  LCQESKVTEIPSDLPRN-AIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA 72

Query: 333 SSIECLYKLLHLDLEDCKSLKSLPSGLCK-LKSLKYLTLNGCSI--LQRLNFD 382
                L KL  + +E   +L  +     + L +L+YL ++   I  L  ++  
Sbjct: 73  DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 125

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.5 bits (154), Expect = 6e-11
 Identities = 17/108 (15%), Positives = 40/108 (37%), Gaps = 11/108 (10%)

Query: 269 LNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAI 328
              L  +N  + + L  LP       L+ L +    +L  LP++    ++E + ++   +
Sbjct: 139 PALLEYINADNNQ-LTMLPELPTS--LEVLSVRNN-QLTFLPELPE--SLEALDVSTNLL 192

Query: 329 EELPSSIECLYKL----LHLDLEDCKSLKSLPSGLCKLKSLKYLTLNG 372
           E LP+     +      +     + + +  +P  +  L     + L  
Sbjct: 193 ESLPAVPVRNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILED 239

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 9/97 (9%)

Query: 269 LNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAI 328
           +N    L L     L SLP  +    +  L+++    L  LP+    A++E +      +
Sbjct: 58  INQFSELQLNRLN-LSSLPDNL-PPQITVLEITQN-ALISLPE--LPASLEYLDACDNRL 112

Query: 329 EELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSL 365
             LP        L HLD+++ + L  LP     L+ +
Sbjct: 113 STLPELPA---SLKHLDVDNNQ-LTMLPELPALLEYI 145

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.1 bits (127), Expect = 9e-08
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 9/114 (7%)

Query: 255 NIFTKTPN--PSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDI 312
           N  + T     S         +      +++  L     +    EL L+    L  LPD 
Sbjct: 20  NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE-CLINQFSELQLNRL-NLSSLPD- 76

Query: 313 SSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLK 366
           +    I  + +   A+  LP        L +LD  D + L +LP     LK L 
Sbjct: 77  NLPPQITVLEITQNALISLPELPA---SLEYLDACDNR-LSTLPELPASLKHLD 126

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.1 bits (154), Expect = 8e-11
 Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 21/139 (15%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI---------HLEFLKELDLSGCSK 305
           N  +K P   FS   + L  +NL     L  +P            +   L  +DL    K
Sbjct: 443 NQISKFPKELFS-TGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-K 499

Query: 306 LKRLPD---ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSL------KSLP 356
           L +L D    ++   +  + L+  +  + P+       L    + + +        +  P
Sbjct: 500 LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559

Query: 357 SGLCKLKSLKYLTLNGCSI 375
            G+    SL  L +    I
Sbjct: 560 EGITLCPSLTQLQIGSNDI 578

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 13/123 (10%), Positives = 38/123 (30%), Gaps = 5/123 (4%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDIS 313
           +   +      S+       +       +  +   +  L  L++  +        + +  
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNN-ITFVSKAVMRLTKLRQFYMGNS-PF--VAENI 223

Query: 314 SAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGC 373
             A   E        +      + L  L  +++ +C +L  LP+ L  L  ++ + +   
Sbjct: 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

Query: 374 SIL 376
             +
Sbjct: 284 RGI 286

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 20/137 (14%), Positives = 46/137 (33%), Gaps = 15/137 (10%)

Query: 251 ISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRL 309
           I   N+ T     S  + +  L +L     + L+           L  L+L+   ++  +
Sbjct: 312 IGYNNLKTFPVETSLQK-MKKLGMLECLYNQ-LEGKLPAFGSEIKLASLNLAYN-QITEI 368

Query: 310 PD--ISSAANIEEMFLNGTAIEELPSSIEC--LYKLLHLDLE-------DCKSLKSLPSG 358
           P         +E +      ++ +P+  +   +  +  +D         D K+   L   
Sbjct: 369 PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428

Query: 359 LCKLKSLKYLTLNGCSI 375
             K  ++  + L+   I
Sbjct: 429 PFKGINVSSINLSNNQI 445

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 19/139 (13%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKEL------DLSGCSKLK 307
           N  TK  +   +  L  LV ++L         P    +   LK        D  G   L+
Sbjct: 498 NKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556

Query: 308 RLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLK 366
             P+ I+   ++ ++ +    I ++   I     +  LD++D  ++    S +C      
Sbjct: 557 EWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAG 614

Query: 367 YLTLN--------GCSILQ 377
              L         GC  L 
Sbjct: 615 MYMLFYDKTQDIRGCDALD 633

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.1 bits (128), Expect = 9e-08
 Identities = 19/147 (12%), Positives = 50/147 (34%), Gaps = 10/147 (6%)

Query: 249 KIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL--PAGI-HLEFLKELDLSGCSK 305
           + IS   +       + +     + ++ +     LK+      +  ++ L  L+     +
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYN-Q 341

Query: 306 LKRLPD-ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPS--GLCK 361
           L+       S   +  + L    I E+P++      ++ +L     K LK +P+      
Sbjct: 342 LEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKS 400

Query: 362 LKSLKYLTLNGCSILQRLNFDIWSILP 388
           +  +  +  +   I      +   + P
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDP 427

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 16/144 (11%), Positives = 37/144 (25%), Gaps = 11/144 (7%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRD----CKSLKSLPAGI-HLEFLKELDLSGC----SK 305
              +     +  Q L  L VL L             P GI      ++          + 
Sbjct: 91  FGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTF 149

Query: 306 LKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSL 365
           +   P    +  I++   +    + +  S     K   +       +  +   + +L  L
Sbjct: 150 VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN-ITFVSKAVMRLTKL 208

Query: 366 KYLTLNGCSILQRLNFDIWSILPL 389
           +   +     +     + W     
Sbjct: 209 RQFYMGNSPFVAENICEAWENENS 232

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 15/151 (9%), Positives = 40/151 (26%), Gaps = 26/151 (17%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSL----KSLPAGIHLEF--LKELDLSGCSKLKR 308
           +           + ++  +    +    +      +      +F  L +  ++   + K 
Sbjct: 115 HGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174

Query: 309 LP-DISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDL-------------------ED 348
           +           ++      I  +  ++  L KL    +                   E 
Sbjct: 175 IKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY 234

Query: 349 CKSLKSLPSGLCKLKSLKYLTLNGCSILQRL 379
            +  K+       LK L  + +  C  L +L
Sbjct: 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.5 bits (152), Expect = 9e-11
 Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 9/127 (7%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N        +F  HL+ L VL L     ++ +  G    L  L  L+L     L  +P  
Sbjct: 85  NNIQMIQADTFR-HLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN-WLTVIPSG 141

Query: 312 -ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYL 368
                + + E++L    IE +PS     +  L+ LDL + K L+ +  G    L +LKYL
Sbjct: 142 AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201

Query: 369 TLNGCSI 375
            L  C+I
Sbjct: 202 NLGMCNI 208

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.8 bits (145), Expect = 7e-10
 Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 14/142 (9%)

Query: 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCS 304
           +L    +            +F + L  L  LNL  C  +K +P    L  L+EL++SG +
Sbjct: 172 SLMRLDLGELKKLEYISEGAF-EGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSG-N 228

Query: 305 KLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSGLCK 361
               +        ++++++++  + +  +   + + L  L+ L+L     L SLP  L  
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFT 287

Query: 362 -LKSLKYLTLNG------CSIL 376
            L+ L  L L+       C IL
Sbjct: 288 PLRYLVELHLHHNPWNCDCDIL 309

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 11/147 (7%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N      + SFS + + L  L+L  C+ ++++       L  L  L L+G   ++     
Sbjct: 42  NPLKILKSYSFS-NFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGN-PIQSFSPG 98

Query: 312 -ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCK-SLKSLPSGLCKLKSLKYL 368
             S   ++E +    T +  L S  I  L  L  L++         LP+    L +L ++
Sbjct: 99  SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158

Query: 369 TLNGCSI--LQRLNFDIWSILPLVLTT 393
            L+   I  +   +       P V  +
Sbjct: 159 DLSYNYIQTITVNDLQFLRENPQVNLS 185

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 8/127 (6%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           +   +    S    L  L+ L++      K    GI   L  L  L ++G S        
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTN-TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467

Query: 312 -ISSAANIEEMFLNGTAIEELP-SSIECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYL 368
             ++  N+  + L+   +E++     + L++L  L++     L  L S    +L SL  L
Sbjct: 468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN-LLFLDSSHYNQLYSLSTL 526

Query: 369 TLNGCSI 375
             +   I
Sbjct: 527 DCSFNRI 533

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 9/116 (7%)

Query: 266 SQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDIS----SAANIEEM 321
           +  L  L  L L   K        + L  L  LDLS    L      S       ++  +
Sbjct: 324 TLDLPFLKSLTLTMNK-GSISFKKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHL 381

Query: 322 FLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLP--SGLCKLKSLKYLTLNGCSI 375
            L+      + ++   L +L HLD +    LK +   S    L+ L YL ++  + 
Sbjct: 382 DLSFNGAIIMSANFMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYTNT 436

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 9/124 (7%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
                  +  F   L +L  L +       +  + +  +   L  LDLS C +L+++   
Sbjct: 434 TNTKIDFDGIF-LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWG 491

Query: 312 -ISSAANIEEMFLNGTAIEELP-SSIECLYKLLHLDLEDCKSLKSLPSGLCK-LKSLKYL 368
              +   ++ + ++   +  L  S    LY L  LD    + +++    L    KSL + 
Sbjct: 492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFF 550

Query: 369 TLNG 372
            L  
Sbjct: 551 NLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 19/149 (12%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGC--SKLKRLP 310
           N        SF   L +L  L   +   L SL +     L  LK+L+++       K   
Sbjct: 90  NPIQSFSPGSF-SGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147

Query: 311 DISSAANIEEMFLNGTAIEELPSSI-----ECLYKLLHLDLEDCKSLKSLPSGLCKLKSL 365
             S+  N+  + L+   I+ +  +      E     L LD+     +  +     +   L
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGIKL 206

Query: 366 KYLTLNGCSILQRLNFDIWSILPLVLTTF 394
             LTL G       NF+  +I+   L   
Sbjct: 207 HELTLRG-------NFNSSNIMKTCLQNL 228

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 14/137 (10%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNL-----RDCKSLKSLPAGI--HLEFL--KELDLSGCSK 305
           N  +     +  Q+L  L V  L     +D ++L+     I   L  +   E  L+  + 
Sbjct: 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND 273

Query: 306 LKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKS 364
                      AN+  M L G +I+ L    +  +K   L +  C+ LK  P+    L  
Sbjct: 274 FSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKH-FKWQSLSIIRCQ-LKQFPTL--DLPF 329

Query: 365 LKYLTLNGCSILQRLNF 381
           LK LTL           
Sbjct: 330 LKSLTLTMNKGSISFKK 346

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 26/118 (22%), Positives = 35/118 (29%), Gaps = 28/118 (23%)

Query: 261 PNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEE 320
            NP      N        D + L  +P  I     K +DLS    LK L           
Sbjct: 4   LNPCIEVVPNI--TYQCMD-QKLSKVPDDI-PSSTKNIDLSFN-PLKILK---------- 48

Query: 321 MFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCK-LKSLKYLTLNGCSILQ 377
                        S     +L  LDL  C+ ++++       L  L  L L G  I  
Sbjct: 49  -----------SYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQS 94

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 20/139 (14%), Positives = 35/139 (25%), Gaps = 22/139 (15%)

Query: 255 NIFTKTPNPSFS---QHLNTLVVLNLRDCKSLKSLPAGIHLEF----LKELDLSGCSKLK 307
           N              ++    + L++     +  +       F    L EL L G     
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQA---FQGIKLHELTLRGNFNSS 218

Query: 308 RLPDISSAA--------NIEEMFLNGTAIEELPSSI---ECLYKLLHLDLEDCKSLKSLP 356
            +                I   F +   +E    SI    C   +    L          
Sbjct: 219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278

Query: 357 SGLCKLKSLKYLTLNGCSI 375
                L ++  ++L G SI
Sbjct: 279 VKFHCLANVSAMSLAGVSI 297

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 10/136 (7%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD--I 312
           N       P   +    L +L L+    L      ++   L E+DLS   +L+++     
Sbjct: 215 NSINVVRGPVNVE----LTILKLQHNN-LTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPF 268

Query: 313 SSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNG 372
                +E ++++   +  L    + +  L  LDL     L  +     +   L+ L L+ 
Sbjct: 269 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDH 327

Query: 373 CSILQRLNFDIWSILP 388
            SI   L       L 
Sbjct: 328 NSI-VTLKLSTHHTLK 342

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 18/123 (14%), Positives = 39/123 (31%), Gaps = 13/123 (10%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDI 312
           N  +  P   F  +   L  L++ +   L+ +          L+ L LS   +L  +   
Sbjct: 127 NDLSSLPRGIFH-NTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN-RLTHVDL- 182

Query: 313 SSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNG 372
           S   ++    ++   +  L         +  LD      +  +   +     L  L L  
Sbjct: 183 SLIPSLFHANVSYNLLSTLAI----PIAVEELDASHNS-INVVRGPV--NVELTILKLQH 235

Query: 373 CSI 375
            ++
Sbjct: 236 NNL 238

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 11/130 (8%)

Query: 255 NIFTKTP----NPSFSQHLNTLVVLNLRD-CKSLKSLPAGIHLEFLKELDLSGCSKLKRL 309
           N+  + P      S  Q+      +++    + +      I L   K +       +++L
Sbjct: 2   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKL 60

Query: 310 PD--ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSG-LCKLKSL 365
           P   + S   +E + LN   IEE+ +      + +  L +     ++ LP      +  L
Sbjct: 61  PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLL 119

Query: 366 KYLTLNGCSI 375
             L L    +
Sbjct: 120 TVLVLERNDL 129

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 19/137 (13%)

Query: 267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGT 326
           Q+LN L+ L L+D + +  L    +L  + EL+LSG   LK +  I+   +I+ + L  T
Sbjct: 60  QYLNNLIGLELKDNQ-ITDLAPLKNLTKITELELSGN-PLKNVSAIAGLQSIKTLDLTST 117

Query: 327 AIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI----------- 375
            I ++ + +  L  L  L L+  + + ++ S L  L +L+YL++    +           
Sbjct: 118 QITDV-TPLAGLSNLQVLYLDLNQ-ITNI-SPLAGLTNLQYLSIGNAQVSDLTPLANLSK 174

Query: 376 LQRLNFD---IWSILPL 389
           L  L  D   I  I PL
Sbjct: 175 LTTLKADDNKISDISPL 191

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 23/108 (21%), Positives = 49/108 (45%), Gaps = 5/108 (4%)

Query: 268 HLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTA 327
            L+ +  L+      + ++    +L  L  L+L    ++  L  + +   I E+ L+G  
Sbjct: 39  DLDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNP 96

Query: 328 IEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
           ++ + S+I  L  +  LDL   + +  + + L  L +L+ L L+   I
Sbjct: 97  LKNV-SAIAGLQSIKTLDLTSTQ-ITDV-TPLAGLSNLQVLYLDLNQI 141

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 20/109 (18%), Positives = 49/109 (44%), Gaps = 5/109 (4%)

Query: 267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGT 326
             L+ L VL L   + + ++     L  L+ L +    ++  L  +++ + +  +  +  
Sbjct: 126 AGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDN 183

Query: 327 AIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
            I ++ S +  L  L+ + L++ + +  + S L    +L  +TL   +I
Sbjct: 184 KISDI-SPLASLPNLIEVHLKNNQ-ISDV-SPLANTSNLFIVTLTNQTI 229

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 10/129 (7%)

Query: 254 CNIFTKTPNPSFSQ-HLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLP 310
              F    N +F     + +   +L     + +L   +  H   L++L L+  +++ ++ 
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSK-SKIFALLKSVFSHFTDLEQLTLAQ-NEINKID 315

Query: 311 D--ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGL-CKLKSLK 366
           D       ++ ++ L+   +  + S + E L KL  LDL     +++L       L +LK
Sbjct: 316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLK 374

Query: 367 YLTLNGCSI 375
            L L+   +
Sbjct: 375 ELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 26/127 (20%), Positives = 44/127 (34%), Gaps = 12/127 (9%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N   +    SFS  L  L  L +        +       L  L  L L   ++  +L   
Sbjct: 40  NSIAELNETSFS-RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY-NQFLQLETG 97

Query: 312 -ISSAANIEEMFLNGTAIEE--LPSSI-ECLYKLLHLDLEDCKSLKSL-PSGL-CKLKSL 365
             +  AN+E + L    ++   L  +  + L  L  L L D   +K + P+     ++  
Sbjct: 98  AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRF 156

Query: 366 KYLTLNG 372
             L L  
Sbjct: 157 HVLDLTF 163

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 303 CS--KLKRLPDISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSGL 359
           C    L ++P++   A++  + L+  +I EL   S   L  L  L +E       + +  
Sbjct: 17  CINRGLHQVPELP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT 74

Query: 360 C-KLKSLKYLTLNGCSI 375
              L SL  L L+    
Sbjct: 75  FRGLSSLIILKLDYNQF 91

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.1 bits (148), Expect = 3e-10
 Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 10/136 (7%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD--I 312
           N       P   +    L +L L+    L      ++   L E+DLS   +L+++     
Sbjct: 221 NSINVVRGPVNVE----LTILKLQHNN-LTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPF 274

Query: 313 SSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNG 372
                +E ++++   +  L    + +  L  LDL     L  +     +   L+ L L+ 
Sbjct: 275 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDH 333

Query: 373 CSILQRLNFDIWSILP 388
            SI   L       L 
Sbjct: 334 NSI-VTLKLSTHHTLK 348

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 11/130 (8%)

Query: 255 NIFTKTP----NPSFSQHLNTLVVLNLRD-CKSLKSLPAGIHLEFLKELDLSGCSKLKRL 309
           N+  + P      S  Q+      +++    + +      I L   K +       +++L
Sbjct: 8   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKL 66

Query: 310 PD--ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSG-LCKLKSL 365
           P   + S   +E + LN   IEE+ +      + +  L +     ++ LP      +  L
Sbjct: 67  PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLL 125

Query: 366 KYLTLNGCSI 375
             L L    +
Sbjct: 126 TVLVLERNDL 135

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 18/123 (14%), Positives = 39/123 (31%), Gaps = 13/123 (10%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDI 312
           N  +  P   F  +   L  L++ +   L+ +          L+ L LS   +L  +   
Sbjct: 133 NDLSSLPRGIF-HNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN-RLTHVDL- 188

Query: 313 SSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNG 372
           S   ++    ++   +  L         +  LD      +  +   +     L  L L  
Sbjct: 189 SLIPSLFHANVSYNLLSTLAI----PIAVEELDASHNS-INVVRGPVN--VELTILKLQH 241

Query: 373 CSI 375
            ++
Sbjct: 242 NNL 244

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 60.2 bits (146), Expect = 4e-10
 Identities = 32/155 (20%), Positives = 55/155 (35%), Gaps = 14/155 (9%)

Query: 251 ISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKR 308
           +S  N+       + +  L  L  L L     L  + +     +  L+ LDLS    L  
Sbjct: 46  LSHNNLSRLRAEWTPT-RLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN-HLHT 102

Query: 309 LPD--ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSG----LCK 361
           L +   S    +E + L    I  +  +  E + +L  L L   + +   P        K
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNK 161

Query: 362 LKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIY 396
           L  L  L L+   + ++L       LP  +   +Y
Sbjct: 162 LPKLMLLDLSSNKL-KKLPLTDLQKLPAWVKNGLY 195

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 10/141 (7%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCK-SLKSLPAG--IHLEFLKELDLSGCSKLKRLP- 310
           N     P+  F   L  L  L+L     S K   +        LK LDLS    +  +  
Sbjct: 38  NKLQSLPHGVFD-KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSS 95

Query: 311 DISSAANIEEMFLNGTAIEELPSS--IECLYKLLHLDLEDCKSLKSLPSGLCK-LKSLKY 367
           +      +E +    + ++++        L  L++LD+      +   +G+   L SL+ 
Sbjct: 96  NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEV 154

Query: 368 LTLNGCSILQRLNFDIWSILP 388
           L + G S  +    DI++ L 
Sbjct: 155 LKMAGNSFQENFLPDIFTELR 175

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 29/139 (20%), Positives = 52/139 (37%), Gaps = 17/139 (12%)

Query: 251 ISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKR 308
           IS  +      N  F   L++L VL +      ++    I   L  L  LDLS C +L++
Sbjct: 133 ISHTHT-RVAFNGIF-NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQ 189

Query: 309 LPDISSA--ANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGLCK--LK 363
           L   +    ++++ + ++      L +   +CL  L  LD      + +      +    
Sbjct: 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPS 248

Query: 364 SLKYLTLNG------CSIL 376
           SL +L L        C   
Sbjct: 249 SLAFLNLTQNDFACTCEHQ 267

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 10/117 (8%)

Query: 279 DC--KSLKSLPAGIHLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNG---TAIEEL 331
            C  K L S+P GI       L+L    KL+ LP         + ++ L+    +     
Sbjct: 13  RCNSKGLTSVPTGI-PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70

Query: 332 PSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILP 388
             S      L +LDL     + ++ S    L+ L++L     ++ Q   F ++  L 
Sbjct: 71  SQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.5 bits (146), Expect = 5e-10
 Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 9/130 (6%)

Query: 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSK 305
           + E I  +  I    P+ +F++     +  NL+  KS+        L  + ++  +    
Sbjct: 1   MGETITVSTPIKQIFPDDAFAE----TIKDNLKK-KSVTDAVTQNELNSIDQIIANNS-D 54

Query: 306 LKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSL 365
           +K +  I    N+ ++FLNG  + ++   +  L  L  L L++ K +K L S L  LK L
Sbjct: 55  IKSVQGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENK-IKDL-SSLKDLKKL 111

Query: 366 KYLTLNGCSI 375
           K L+L    I
Sbjct: 112 KSLSLEHNGI 121

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.4 bits (138), Expect = 5e-09
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 5/109 (4%)

Query: 267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGT 326
           Q+L  +  L L   K L  +    +L+ L  L L    K+K L  +     ++ + L   
Sbjct: 62  QYLPNVTKLFLNGNK-LTDIKPLTNLKNLGWLFLDEN-KIKDLSSLKDLKKLKSLSLEHN 119

Query: 327 AIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
            I ++ + +  L +L  L L + K +  + + L +L  L  L+L    I
Sbjct: 120 GISDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQI 165

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.3 bits (146), Expect = 7e-10
 Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 14/127 (11%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMF 322
           P+    L  L   N R    L SLPA      LKEL +SG  +L  LP     + ++E+ 
Sbjct: 197 PTLPSELYKLWAYNNR----LTSLPA--LPSGLKELIVSGN-RLTSLPV--LPSELKELM 247

Query: 323 LNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFD 382
           ++G  +  LP        LL L +   + L  LP  L  L S   + L G   L      
Sbjct: 248 VSGNRLTSLPMLPS---GLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP-LSERTLQ 302

Query: 383 IWSILPL 389
               +  
Sbjct: 303 ALREITS 309

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.8 bits (137), Expect = 7e-09
 Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 20/113 (17%)

Query: 269 LNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTA 327
              +  L + D  +L SLPA      L+ L++SG  +L  LP        +       T 
Sbjct: 60  PAHITTLVIPDN-NLTSLPALP--PELRTLEVSGN-QLTSLPVLPPGLLELSIFSNPLTH 115

Query: 328 IEELPSSIECLY--------------KLLHLDLEDCKSLKSLPSGLCKLKSLK 366
           +  LPS +  L+               L  L + D + L SLP+   +L  L 
Sbjct: 116 LPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ-LASLPALPSELCKLW 167

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 12/92 (13%)

Query: 295 LKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKS 354
              L++     L  LPD    A+I  + +    +  LP+      +L  L++   + L S
Sbjct: 42  NAVLNVGES-GLTTLPD-CLPAHITTLVIPDNNLTSLPALPP---ELRTLEVSGNQ-LTS 95

Query: 355 LPSGLCKLKSLKYLTLNGCSI------LQRLN 380
           LP     L  L   +     +      L +L 
Sbjct: 96  LPVLPPGLLELSIFSNPLTHLPALPSGLCKLW 127

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.3 bits (120), Expect = 9e-07
 Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 27/129 (20%)

Query: 264 SFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCS----------------KL 306
           S       L  L +   + L SLP     L  L                         +L
Sbjct: 75  SLPALPPELRTLEVSGNQ-LTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQL 133

Query: 307 KRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLK 366
             LP       ++E+ ++   +  LP+      +L  L   + + L SLP        L+
Sbjct: 134 TSLPV--LPPGLQELSVSDNQLASLPALPS---ELCKLWAYNNQ-LTSLPMLPS---GLQ 184

Query: 367 YLTLNGCSI 375
            L+++   +
Sbjct: 185 ELSVSDNQL 193

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 22/130 (16%), Positives = 37/130 (28%), Gaps = 9/130 (6%)

Query: 264 SFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMF 322
           S     + L  L +   + L SLP       L  L +    +L RLP+ +   ++   + 
Sbjct: 235 SLPVLPSELKELMVSGNR-LTSLPMLP--SGLLSLSVYRN-QLTRLPESLIHLSSETTVN 290

Query: 323 LNGTAIEELPSSIECLYKLLHLD----LEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQR 378
           L G  + E                   +    +  S P     L       L      + 
Sbjct: 291 LEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEP 350

Query: 379 LNFDIWSILP 388
              D W +  
Sbjct: 351 APADRWHMFG 360

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.0 bits (143), Expect = 9e-10
 Identities = 23/140 (16%), Positives = 50/140 (35%), Gaps = 16/140 (11%)

Query: 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSG 302
            L+E  I A ++       S  + +  +  L L   +    L          ++ L+L  
Sbjct: 175 FLEELEIDASDL-QSYEPKSL-KSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRD 231

Query: 303 ----CSKLKRLPDISSAA-----NIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLK 353
                     L    + +         + +   ++ ++   +  +  LL L+    + LK
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LK 290

Query: 354 SLPSGLCK-LKSLKYLTLNG 372
           S+P G+   L SL+ + L+ 
Sbjct: 291 SVPDGIFDRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 27/171 (15%), Positives = 52/171 (30%), Gaps = 39/171 (22%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N +      S   HL  L +L + +  +   +       L FL+EL++     L+     
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPK 192

Query: 312 -ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLED--------------------- 348
            + S  N+  + L+      L     +    +  L+L D                     
Sbjct: 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252

Query: 349 ----------CKSLKSLPSGLCKLKSLKYLTLNGCSI--LQRLNFDIWSIL 387
                      +SL  +   L ++  L  L  +   +  +    FD  + L
Sbjct: 253 KFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSL 303

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 9/103 (8%)

Query: 279 DC--KSLKSLPAGIHLEFLKELDLSGCSKLKRLP--DISSAANIEEMFLNGTAIEELPSS 334
                SL S+P+G+  E +K LDLS  +++  +   D+    N++ + L    I  +   
Sbjct: 37  KGSSGSLNSIPSGL-TEAVKSLDLSN-NRITYISNSDLQRCVNLQALVLTSNGINTIEED 94

Query: 335 I-ECLYKLLHLDLEDCKSLKSLPSGL-CKLKSLKYLTLNGCSI 375
               L  L HLDL     L +L S     L SL +L L G   
Sbjct: 95  SFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPY 136

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 9/113 (7%)

Query: 267 QHLNTLVVLNLRDCKSLKSLPAGI---HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM 321
           + L++L  LNL      K+L       HL  L+ L +       ++     +    +EE+
Sbjct: 121 KPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179

Query: 322 FLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSGL-CKLKSLKYLTLNG 372
            ++ + ++     S++ +  + HL L   +    L         S++ L L  
Sbjct: 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRD 231

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 5/108 (4%)

Query: 268 HLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTA 327
                +  NL+  KS+        L  + ++  +    +K +  I    N+ ++FLNG  
Sbjct: 22  AFAETIKDNLKK-KSVTDAVTQNELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGNK 79

Query: 328 IEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
           + ++   +  L  L  L L++ K +K L S L  LK LK L+L    I
Sbjct: 80  LTDI-KPLANLKNLGWLFLDENK-VKDL-SSLKDLKKLKSLSLEHNGI 124

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 5/109 (4%)

Query: 267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGT 326
           Q+L  +  L L   K L  +    +L+ L  L L    K+K L  +     ++ + L   
Sbjct: 65  QYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSLEHN 122

Query: 327 AIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
            I ++ + +  L +L  L L + K +  + + L +L  L  L+L    I
Sbjct: 123 GISDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQI 168

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 5/108 (4%)

Query: 268 HLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTA 327
           +L  L  L L + K +K L +   L+ LK L L     +  +  +     +E ++L    
Sbjct: 88  NLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNNK 145

Query: 328 IEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
           I ++ + +  L KL  L LED + +  +   L  L  L+ L L+   I
Sbjct: 146 ITDI-TVLSRLTKLDTLSLEDNQ-ISDI-VPLAGLTKLQNLYLSKNHI 190

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 13/120 (10%)

Query: 261 PNPSFSQHLNTLVVLNLRDCKSLKSLPAGI----HLEFLKELDLSGCSKLKRLPD-ISSA 315
            N +      +L  L L     L+S+         L+ L  LD+S       +PD     
Sbjct: 352 KNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWP 409

Query: 316 ANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
             +  + L+ T I  + + I     L  LD+ +   L S       L  L+ L ++   +
Sbjct: 410 EKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNN-LDSFSLF---LPRLQELYISRNKL 463

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 14/131 (10%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDI 312
                  +  +S  L  +  + + + K +  +P     HL+ L+ LDLS    +      
Sbjct: 296 FYLFYDLSTVYS-LLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSEN-LMVEEYLK 352

Query: 313 SSAA-----NIEEMFLNGTAIEELPSSIE---CLYKLLHLDLEDCKSLKSLPSGLCKLKS 364
           +SA      +++ + L+   +  +  + E    L  L  LD+        +P      + 
Sbjct: 353 NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEK 411

Query: 365 LKYLTLNGCSI 375
           +++L L+   I
Sbjct: 412 MRFLNLSSTGI 422

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 11/146 (7%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N +      S   +L  L  L + + ++   +       L  L EL++     L+     
Sbjct: 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA-LSLRNYQSQ 166

Query: 312 -ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLP----SGLCKLKSL 365
            + S  +I  + L+ +    L     + L  + +L+L D  +L                +
Sbjct: 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPM 225

Query: 366 KYLTLNGCSILQRLNFDIWSILPLVL 391
           K L   G  +      ++  +L  +L
Sbjct: 226 KKLAFRGSVLTDESFNELLKLLRYIL 251

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 10/119 (8%)

Query: 269 LNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLN 324
              +  L+L   K +  +  G       L+ L L    ++  +      S  ++E + L+
Sbjct: 25  TAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLS 82

Query: 325 GTAIEELPSS-IECLYKLLHLDLEDCKSLKSLPSGLC--KLKSLKYLTLNGCSILQRLN 380
              +  L SS    L  L +L+L      ++L        L +L+ L +        + 
Sbjct: 83  DNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 30/148 (20%), Positives = 63/148 (42%), Gaps = 13/148 (8%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N      + SF      L VL+L  C+ ++++  G    L  L  L L+G + ++ L   
Sbjct: 38  NPLRHLGSYSFF-SFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTG-NPIQSLALG 94

Query: 312 -ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSG--LCKLKSLKY 367
             S  ++++++    T +  L +  I  L  L  L++     ++S         L +L++
Sbjct: 95  AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEH 153

Query: 368 LTLNGCSI--LQRLNFDIWSILPLVLTT 393
           L L+   I  +   +  +   +PL+  +
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 25/160 (15%), Positives = 56/160 (35%), Gaps = 11/160 (6%)

Query: 232 FKENSEKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIH 291
           + ++   L      +    + +  I  +  + S++     L ++N          P  + 
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTI-ERVKDFSYNFGWQHLELVNC----KFGQFPT-LK 323

Query: 292 LEFLKELDLSGCSKLKRLPDISSAANIEEMFLNG---TAIEELPSSIECLYKLLHLDLED 348
           L+ LK L  +   K           ++E + L+    +       S      L +LDL  
Sbjct: 324 LKSLKRLTFTSN-KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 349 CKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILP 388
              + ++ S    L+ L++L     ++ Q   F ++  L 
Sbjct: 383 NG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 10/120 (8%)

Query: 263 PSFSQHLNTLVVLNLRDCK-SLKSLPAGI--HLEFLKELDLSGCSKLKRLP-DISSAANI 318
            S    L +L  L+L     S K   +        LK LDLS    +  +  +      +
Sbjct: 341 FSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQL 398

Query: 319 EEMFLNGTAIEELP--SSIECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNGCSI 375
           E +    + ++++   S    L  L++LD+      +   +G    L SL+ L + G S 
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSF 457

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 270 NTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNG 325
            +   L+L     L+ L +        L+ LDLS C +++ + D    S +++  + L G
Sbjct: 28  FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG 85

Query: 326 TAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNGCSI 375
             I+ L       L  L  L   +   L SL +  +  LK+LK L +    I
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLI 136

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 28/125 (22%)

Query: 251 ISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKR 308
           IS  +   +         L++L VL +      ++    I   L  L  LDLS C +L++
Sbjct: 428 ISHTHT--RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQ 484

Query: 309 LPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKY 367
           L            F +             L  L  L++   + LKS+P G   +L SL+ 
Sbjct: 485 LS--------PTAFNS-------------LSSLQVLNMASNQ-LKSVPDGIFDRLTSLQK 522

Query: 368 LTLNG 372
           + L+ 
Sbjct: 523 IWLHT 527

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 14/125 (11%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANI 318
           P   Q L  L VL++   + L SLP G    L  L+EL L G ++LK LP   ++    +
Sbjct: 93  PLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKL 150

Query: 319 EEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNG----- 372
           E++ L    + ELP+ +   L  L  L L++  SL ++P G      L +  L+G     
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNPWLC 209

Query: 373 -CSIL 376
            C IL
Sbjct: 210 NCEIL 214

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 28/120 (23%)

Query: 279 DC--KSLKSLPAGI-----------------------HLEFLKELDLSGCSKLKRLPDIS 313
           +C  ++L +LP  +                           L +L+L    +L +L    
Sbjct: 16  NCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDG 74

Query: 314 SAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGL-CKLKSLKYLTLNG 372
           +   +  + L+   ++ LP   + L  L  LD+   + L SLP G    L  L+ L L G
Sbjct: 75  TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKG 133

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.6 bits (141), Expect = 2e-09
 Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 8/151 (5%)

Query: 225 FLKLEERFKENSEKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLK 284
            L  E+   +    L+         +    + F    +    ++ +  V L+L     L 
Sbjct: 397 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRV-LHLAHKD-LT 454

Query: 285 SLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLH 343
            L     L  +  LDLS   +L+ LP  +++   +E +  +  A+E +   +  L +L  
Sbjct: 455 VLCHLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQE 512

Query: 344 LDLEDCKSLKSLPS--GLCKLKSLKYLTLNG 372
           L L + + L+   +   L     L  L L G
Sbjct: 513 LLLCNNR-LQQSAAIQPLVSCPRLVLLNLQG 542

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.7 bits (123), Expect = 3e-07
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 296 KELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSL 355
           + L L+    L  L  +     +  + L+   +  LP ++  L  L  L   D   L+++
Sbjct: 444 RVLHLAHK-DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENV 501

Query: 356 PSGLCKLKSLKYLTLNGCSI 375
             G+  L  L+ L L    +
Sbjct: 502 D-GVANLPRLQELLLCNNRL 520

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 18/111 (16%), Positives = 47/111 (42%), Gaps = 4/111 (3%)

Query: 267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCS-KLKRLPDISSAANIEEMFLNG 325
           ++ + +  L + +     +      L  L+ L + G      ++P++S   ++  + ++ 
Sbjct: 63  EYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 326 TAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
           +A ++   + I  L K+  +DL    ++  +   L  L  LK L +    +
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.2 bits (131), Expect = 9e-09
 Identities = 21/130 (16%), Positives = 53/130 (40%), Gaps = 4/130 (3%)

Query: 248 EKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLK 307
           +  ++     + T N + +Q +N+L  + L +   +  L    +   +K+L ++      
Sbjct: 23  KAYLNGLLGQSSTANITEAQ-MNSLTYITLANIN-VTDLTGIEYAHNIKDLTINNI-HAT 79

Query: 308 RLPDISSAANIEEMFLNGTAI-EELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLK 366
               IS  +N+E + + G  +  +   ++  L  L  LD+       S+ + +  L  + 
Sbjct: 80  NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139

Query: 367 YLTLNGCSIL 376
            + L+    +
Sbjct: 140 SIDLSYNGAI 149

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 8/131 (6%)

Query: 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCS 304
           A ++  + A       P+ +F  +LN      L    +     A   +  L  + L+   
Sbjct: 2   AAEQTGLKASQDNVNIPDSTFKAYLN----GLLGQSSTANITEA--QMNSLTYITLANI- 54

Query: 305 KLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKS 364
            +  L  I  A NI+++ +N        + I  L  L  L +            L  L S
Sbjct: 55  NVTDLTGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTS 113

Query: 365 LKYLTLNGCSI 375
           L  L ++  + 
Sbjct: 114 LTLLDISHSAH 124

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.3 bits (108), Expect = 8e-06
 Identities = 16/106 (15%), Positives = 37/106 (34%), Gaps = 4/106 (3%)

Query: 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCS 304
           L+   I   ++   +        L +L +L++       S+   I  L  +  +DLS   
Sbjct: 90  LERLRIMGKDV--TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

Query: 305 KLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCK 350
            +  +  + +   ++ + +    + +    IE   KL  L      
Sbjct: 148 AITDIMPLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQT 192

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 57.6 bits (139), Expect = 3e-09
 Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 12/128 (9%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLP--AGI--HLEFLKELDLSGCSKLKRLP 310
           N+ T T   +   HL  L  L L+  + LK L   A +   ++ L++LD+S  S      
Sbjct: 334 NLLTDTVFENCG-HLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391

Query: 311 DI--SSAANIEEMFLNGTAIEELPSSIECL-YKLLHLDLEDCKSLKSLPSGLCKLKSLKY 367
               S   ++  + ++   + +      CL  ++  LDL   K +KS+P  + KL++L+ 
Sbjct: 392 KGDCSWTKSLLSLNMSSNILTDTIF--RCLPPRIKVLDLHSNK-IKSIPKQVVKLEALQE 448

Query: 368 LTLNGCSI 375
           L +    +
Sbjct: 449 LNVASNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 33/138 (23%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDI 312
           N  ++         L+ L +L +   + ++ L   +    + L+ LDLS   KL ++   
Sbjct: 31  NYISELWTSDIL-SLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHN-KLVKISCH 87

Query: 313 SSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSG--LCKLKSLKYLTL 370
                                       L HLDL       +LP       +  LK+L L
Sbjct: 88  P------------------------TVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGL 122

Query: 371 NGCSILQRLNFDIWSILP 388
           +    L++ +    + L 
Sbjct: 123 STTH-LEKSSVLPIAHLN 139

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 12/157 (7%)

Query: 242 WRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKS--LKSLPAGIHLEF--LKE 297
           W   +    IS   +  +     F     +L  L++    S       + I+  F  +  
Sbjct: 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNI 304

Query: 298 LDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKS 354
            + +  S  + +     S  +    +  +   + +        L +L  L L+  + LK 
Sbjct: 305 KNFT-VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKE 362

Query: 355 LPSG---LCKLKSLKYLTLNGCSILQRLNFDIWSILP 388
           L        ++KSL+ L ++  S+         S   
Sbjct: 363 LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 5/112 (4%)

Query: 267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGT 326
            +      L+LR  K       G  L+    +D S   ++++L        ++ + +N  
Sbjct: 16  TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNN 74

Query: 327 AIEELPSSI-ECLYKLLHLDLEDCK--SLKSLPSGLCKLKSLKYLTLNGCSI 375
            I  +   + + L  L  L L +     L  L   L  LKSL YL +    +
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPV 125

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 8e-09
 Identities = 60/393 (15%), Positives = 108/393 (27%), Gaps = 134/393 (34%)

Query: 109 HSHAHFD--------SYEGV-----PTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDE 155
           H H H D         Y+ +        + + D +D       S LS++ I+  I   D 
Sbjct: 2   HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKD-VQDMPKSILSKEEIDHIIMSKDA 60

Query: 156 ISQS--LVDAIEASAISLI-IFSEG-----YASSRWFFDKLVKILQCKRVYGQIVLPVFY 207
           +S +  L   + +    ++  F E      Y   ++    +    + +            
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINY---KFLMSPIKT--EQR------------ 103

Query: 208 GVDPAPVKWPTGSYGDSFLKLEERFKENS----EKLQTWRNALKEKIISACNI------- 256
              P+ +        D      + F + +    +     R AL E +  A N+       
Sbjct: 104 --QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNVLIDGVLG 160

Query: 257 FTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIH-------------LEFLKEL----D 299
             KT           + +      K    +   I              LE L++L    D
Sbjct: 161 SGKT----------WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 300 LSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLED----------- 348
            +  S+     +I    +  +  L    + +      CL     L L +           
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRR--LLKSKPYENCL-----LVLLNVQNAKAWNAFN 263

Query: 349 --CK----------------------SLKSLPSGLCKLKSL----KYLTLNGCSILQRLN 380
             CK                      SL      L   +      KYL    C   Q L 
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL---DCRP-QDLP 319

Query: 381 FDIWSILPLVLTTFIYVYKFFVETSAASGDDWK 413
            ++ +  P  L+      +  + T     D+WK
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATW----DNWK 348

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 5e-04
 Identities = 53/323 (16%), Positives = 94/323 (29%), Gaps = 103/323 (31%)

Query: 115 DSYEGVPTAIPSEDTRDN--FTSHLY-SAL-------SQKSIETF--------INRGDEI 156
           D    +   I S          S  Y + L       + K+   F          R  ++
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 157 SQSLVDAIEASAISLIIFSEGYASSRWFFDK------LVKILQCKRVYGQIVLP-VFYGV 209
           +  L  A   + ISL   S                  L+K L C+       LP      
Sbjct: 278 TDFL-SAATTTHISLDHHSMT-------LTPDEVKSLLLKYLDCR--PQD--LPREVLTT 325

Query: 210 DPAPVKWPTGSYGDSFLKLE---ERFKENSEKLQTWRNALKEKIISACNIFTKTPNPSFS 266
           +P               +L    E  ++       W++   +K                 
Sbjct: 326 NP--------------RRLSIIAESIRDGLATWDNWKHVNCDK----------------- 354

Query: 267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN-- 324
             L T++        SL  L    + +    L +         P    +A+I  + L+  
Sbjct: 355 --LTTIIE------SSLNVLEPAEYRKMFDRLSV--------FPP---SAHIPTILLSLI 395

Query: 325 -GTAIEELPSSI--ECLYKLLHLDLEDCKSLKSLPSGLCKL--KSLKYLTLNGCSILQRL 379
               I+     +  +     L ++ +  +S  S+PS   +L  K      L+  SI+   
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSL-VEKQPKESTISIPSIYLELKVKLENEYALHR-SIVDHY 453

Query: 380 N----FDIWSILPLVLTTFIYVY 398
           N    FD   ++P  L  + Y +
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSH 476

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.1 bits (128), Expect = 9e-09
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 6/112 (5%)

Query: 267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGT 326
             +  LV L+       K        E L+ L       L  + ++     ++++ L+  
Sbjct: 17  SDVKELV-LDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDN 74

Query: 327 AIEELPSSI-ECLYKLLHLDLEDCK--SLKSLPSGLCKLKSLKYLTLNGCSI 375
            +      + E    L HL+L   K   L ++   L KL++LK L L  C +
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 11/101 (10%)

Query: 275 LNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSS 334
           L  R    +K L           LD S  ++ K          +E +      +  + ++
Sbjct: 11  LRNRTPSDVKEL----------VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-AN 59

Query: 335 IECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
           +  L KL  L+L D +    L     K  +L +L L+G  I
Sbjct: 60  LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGT 326
           + L+ +   N  +   ++SL        LKEL LS   ++  L  +     +EE+ +N  
Sbjct: 38  KELSGVQNFNGDNSN-IQSLAGMQFFTNLKELHLSHN-QISDLSPLKDLTKLEELSVNRN 95

Query: 327 AIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
            ++ L + I     L  L L++ + L+     L  LK+L+ L++    +
Sbjct: 96  RLKNL-NGIPSA-CLSRLFLDNNE-LRDT-DSLIHLKNLEILSIRNNKL 140

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 6/109 (5%)

Query: 267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGT 326
           Q    L  L+L   + +  L     L  L+EL ++   +LK L  I SA  +  +FL+  
Sbjct: 60  QFFTNLKELHLSHNQ-ISDLSPLKDLTKLEELSVNRN-RLKNLNGIPSA-CLSRLFLDNN 116

Query: 327 AIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
            + +   S+  L  L  L + + K LKS+   L  L  L+ L L+G  I
Sbjct: 117 ELRDT-DSLIHLKNLEILSIRNNK-LKSI-VMLGFLSKLEVLDLHGNEI 162

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 11/141 (7%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-- 311
           + F    + +F    + L  L+L     L  LP+G+  L  LK+L LS   K + L    
Sbjct: 264 HYFFNISSNTFH-CFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSAN-KFENLCQIS 320

Query: 312 ISSAANIEEMFL--NGTAIEELPSSIECLYKLLHLDLEDCK--SLKSLPSGLCKLKSLKY 367
            S+  ++  + +  N   +E     +E L  L  LDL      +       L  L  L+ 
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380

Query: 368 LTLNGCSILQRLNFDIWSILP 388
           L L+       L  + +   P
Sbjct: 381 LNLSYNEP-LSLKTEAFKECP 400

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 8/120 (6%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGI---HLEFLKELDLSGCSKLKRLPDI---SSAA 316
              +        LN    ++L  +  G+    ++ L              P +       
Sbjct: 195 EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254

Query: 317 NIEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
           ++E + L       +  ++  C   L  LDL     L  LPSGL  L +LK L L+    
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKF 313

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 11/134 (8%)

Query: 251 ISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKR 308
           +S  +I T        ++L+ L  LNL   +   SL          L+ LDL+   +LK 
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFT-RLKV 414

Query: 309 LPD---ISSAANIEEMFLNGTAIEELP-SSIECLYKLLHLDLEDCK---SLKSLPSGLCK 361
                   +   ++ + L+ + ++       + L  L HL+L+            + L  
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

Query: 362 LKSLKYLTLNGCSI 375
           L  L+ L L+ C +
Sbjct: 475 LGRLEILVLSFCDL 488

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 25/148 (16%), Positives = 43/148 (29%), Gaps = 11/148 (7%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLP-- 310
              +         +  TL  L L     + S+        E LK LD      +  L   
Sbjct: 115 TGISSIDFIPL-HNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKE 171

Query: 311 DISSAANIEEMFL--NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGL--CKLKSLK 366
           D+SS      + L  NG  I  +            L+    ++L  +  GL    ++SL 
Sbjct: 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW 231

Query: 367 YLTLNGCSILQRLNFDIWSILPLVLTTF 394
             T                +  + + + 
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESI 259

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 8/106 (7%)

Query: 274 VLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLP--DISSAANIEEMFLNGTAIEEL 331
             N  +   L  +P  +     + L+ S    L  +     S   N+  + L    I  +
Sbjct: 16  TYNCENL-GLNEIPGTL-PNSTECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 332 PS-SIECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNGCSI 375
              + +  ++L  L L     L  +    L   K+LK+L      I
Sbjct: 73  HEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHLFFIQTGI 117

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 5/82 (6%)

Query: 296 KELDLSGCSKLKRLP-DISSAANIEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDCKSLK 353
           K  +      L  +P  + +  + E +  +   +  +  ++   L  L  LDL  C+   
Sbjct: 15  KTYNCENLG-LNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 354 SLPSGLCKLKSLKYLTLNGCSI 375
                      L  L L    +
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPL 93

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 29/148 (19%), Positives = 62/148 (41%), Gaps = 13/148 (8%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N      + SF      L VL+L  C+ ++++  G    L  L  L L+G + ++ L   
Sbjct: 38  NPLRHLGSYSFF-SFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTG-NPIQSLALG 94

Query: 312 -ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPS-GLC-KLKSLKY 367
             S  ++++++    T +  L +     L  L  L++     ++S         L +L++
Sbjct: 95  AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEH 153

Query: 368 LTLNGCSI--LQRLNFDIWSILPLVLTT 393
           L L+   I  +   +  +   +PL+  +
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 31/122 (25%)

Query: 279 DC--KSLKSLPAGI-----------------------HLEFLKELDLSGCSKLKRLPD-- 311
            C   +   +P  +                           L+ LDLS C +++ + D  
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGA 71

Query: 312 ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGL-CKLKSLKYLT 369
             S +++  + L G  I+ L       L  L  L   +   L SL +     LK+LK L 
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELN 130

Query: 370 LN 371
           + 
Sbjct: 131 VA 132

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 15/133 (11%)

Query: 267 QHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDI---SSAANIEEM 321
             L++L  L   +   L SL      HL+ LKEL+++  + ++        S+  N+E +
Sbjct: 97  SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHL 154

Query: 322 FLNGTAIEELPSSI-ECLYKL----LHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI- 375
            L+   I+ +  +    L+++    L LDL     +  +  G  K   LK L L+   + 
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLK 213

Query: 376 -LQRLNFDIWSIL 387
            +    FD  + L
Sbjct: 214 SVPDGIFDRLTSL 226

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 6/110 (5%)

Query: 269 LNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAI 328
           +  LV L+       K          L+ L L     L  + ++     ++++ L+   I
Sbjct: 26  VRELV-LDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISVSNLPKLPKLKKLELSENRI 83

Query: 329 EELPSSI-ECLYKLLHLDLEDCK--SLKSLPSGLCKLKSLKYLTLNGCSI 375
                 + E L  L HL+L   K   + +L   L KL+ LK L L  C +
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEV 132

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 9/127 (7%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-- 311
           N      + SF      L VL+L  C+           L  L  L L+G   ++ L    
Sbjct: 38  NPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGA 95

Query: 312 ISSAANIEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSL--PSGLCKLKSLKYL 368
            S  ++++++    T +  L    I  L  L  L++     ++S   P     L +L++L
Sbjct: 96  FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHL 154

Query: 369 TLNGCSI 375
            L+   I
Sbjct: 155 DLSSNKI 161

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 8/131 (6%)

Query: 251 ISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRL 309
           +S   +  K           +L  L+L     + ++ +    LE L+ LD      LK++
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQM 411

Query: 310 PDIS---SAANIEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSG-LCKLKS 364
            + S   S  N+  + ++ T            L  L  L +      ++       +L++
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471

Query: 365 LKYLTLNGCSI 375
           L +L L+ C +
Sbjct: 472 LTFLDLSQCQL 482

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 12/130 (9%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGC--SKLKRLP 310
           N        +FS  L++L  L   +  +L SL      HL+ LKEL+++       K   
Sbjct: 86  NPIQSLALGAFS-GLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 311 DISSAANIEEMFLNGTAIEEL-PSSIECLYKL----LHLDLEDCKSLKSLPSGLCKLKSL 365
             S+  N+E + L+   I+ +  + +  L+++    L LDL     +  +  G  K   L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRL 202

Query: 366 KYLTLNGCSI 375
             LTL     
Sbjct: 203 HKLTLRNNFD 212

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 7/136 (5%)

Query: 259 KTPNPSFSQHLNTLVVLNLRDCK-SLKSLPAG--IHLEFLKELDLSGCSKLKRLPDISSA 315
           K  N      L +L  L+L     S K   +        LK LDLS    +    +    
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 316 ANIEEMFLNGTAIEEL--PSSIECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNG 372
             +E +    + ++++   S    L  L++LD+      +   +G    L SL+ L + G
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAG 454

Query: 373 CSILQRLNFDIWSILP 388
            S  +    DI++ L 
Sbjct: 455 NSFQENFLPDIFTELR 470

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
                  + ++ Q L+ L  L L     ++SL  G    L  L++L     + L  L + 
Sbjct: 62  CEIQTIEDGAY-QSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETN-LASLENF 118

Query: 312 -ISSAANIEEMFLNGTAIE--ELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYL 368
            I     ++E+ +    I+  +LP     L  L HLDL   K      + L  L  +  L
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 369 TL 370
            L
Sbjct: 179 NL 180

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 9/103 (8%)

Query: 279 DC--KSLKSLPAGIHLEFLKELDLSGCSKLKRLP--DISSAANIEEMFLNGTAIEEL-PS 333
            C   +   +P  +     K LDLS    L+ L      S   ++ + L+   I+ +   
Sbjct: 13  QCMELNFYKIPDNL-PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 334 SIECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNGCSI 375
           + + L  L  L L     ++SL  G    L SL+ L     ++
Sbjct: 71  AYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNL 112

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 22/135 (16%), Positives = 50/135 (37%), Gaps = 10/135 (7%)

Query: 267 QHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDISSAANIEEMFL- 323
            +L+ +  + +R+ ++L  +       L  LK L +     LK  PD++   + +  F+ 
Sbjct: 77  YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFIL 135

Query: 324 ---NGTAIEELPS-SIECLYKLL-HLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQR 378
              +   +  +P  + + L      L L +     S+         L  + LN    L  
Sbjct: 136 EITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTV 194

Query: 379 LNFDIWSILPLVLTT 393
           ++ D +  +    + 
Sbjct: 195 IDKDAFGGVYSGPSL 209

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 28/116 (24%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAG--IHLEFLKELDLSGCSKLKRLPDISSAANIEE 320
           PS      TL    L +   L+++P+    +L  +  + +S    L++L           
Sbjct: 27  PSLPPSTQTL---KLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLES--------H 74

Query: 321 MFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCK-LKSLKYLTLNGCSI 375
            F N             L K+ H+++ + ++L  +     K L  LK+L +    +
Sbjct: 75  SFYN-------------LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL 117

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 18/133 (13%), Positives = 34/133 (25%), Gaps = 23/133 (17%)

Query: 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCS 304
            LK   I    +    P+ +     +   +L + D   + S+P              G  
Sbjct: 106 LLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA---------FQGLC 155

Query: 305 KLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSG-LCKLK 363
                           + L       +        KL  + L   K L  +       + 
Sbjct: 156 NETL-----------TLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY 204

Query: 364 S-LKYLTLNGCSI 375
           S    L ++  S+
Sbjct: 205 SGPSLLDVSQTSV 217

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 9/127 (7%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N+  +    +F   L  L  L+L D   L+S+       L  L  L L  C  L+ L   
Sbjct: 66  NVLARIDAAAF-TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPG 123

Query: 312 -ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYL 368
                A ++ ++L   A++ LP      L  L HL L     + S+P      L SL  L
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRL 182

Query: 369 TLNGCSI 375
            L+   +
Sbjct: 183 LLHQNRV 189

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 34/137 (24%), Positives = 51/137 (37%), Gaps = 28/137 (20%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDI 312
           N  +  P  SF      L +L L     L  + A     L  L++LDLS  ++L+ +   
Sbjct: 42  NRISHVPAASFR-ACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDP- 98

Query: 313 SSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLN 371
                    F               L +L  L L+ C  L+ L  G    L +L+YL L 
Sbjct: 99  -------ATFHG-------------LGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQ 137

Query: 372 GCSILQRLNFDIWSILP 388
             ++ Q L  D +  L 
Sbjct: 138 DNAL-QALPDDTFRDLG 153

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 8/103 (7%)

Query: 279 DC--KSLKSLPAGIHLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS 334
            C  + L+++P GI     + + L G +++  +P     +  N+  ++L+   +  + ++
Sbjct: 17  SCPQQGLQAVPVGI-PAASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVLARIDAA 74

Query: 335 I-ECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNGCSI 375
               L  L  LDL D   L+S+       L  L  L L+ C +
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 17/135 (12%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N     PN  F   L  L  L L +   L+SLP G+   L  L  L+L+  ++L+ LP  
Sbjct: 95  NQLQSLPNGVF-DKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKG 151

Query: 312 -ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGLC-KLKSLKYL 368
                 N+ E+ L+   ++ LP  + + L +L  L L   + LKS+P G+  +L SL+Y+
Sbjct: 152 VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYI 210

Query: 369 TLNG-------CSIL 376
            L+          I 
Sbjct: 211 WLHDNPWDCTCPGIR 225

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 5/99 (5%)

Query: 275 LNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSS 334
            NL+  KS+        L  + ++  +  S +K +  I    N+  + L G  + ++  +
Sbjct: 24  ANLKK-KSVTDAVTQNELNSIDQIIANN-SDIKSVQGIQYLPNVRYLALGGNKLHDIS-A 80

Query: 335 IECLYKLLHLDLEDCKSLKSLPSGL-CKLKSLKYLTLNG 372
           ++ L  L +L L     L+SLP+G+  KL +LK L L  
Sbjct: 81  LKELTNLTYLILTG-NQLQSLPNGVFDKLTNLKELVLVE 118

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 20/123 (16%)

Query: 270 NTLVVLNLRDCKSLKSLPAGIHLEF--LKELDLSGCSKLKRL---------PDISSAANI 318
           N +  L++   K L  L    + +   + +LDL+   +L  L          D++    +
Sbjct: 180 NKITELDVSQNKLLNRL----NCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQL 235

Query: 319 EEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQR 378
                +   + EL  S   L KL  L       L  +   L     L Y    GC  ++ 
Sbjct: 236 TYFDCSVNPLTELDVST--LSKLTTLHCIQTD-LLEID--LTHNTQLIYFQAEGCRKIKE 290

Query: 379 LNF 381
           L+ 
Sbjct: 291 LDV 293

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 12/115 (10%)

Query: 261 PNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEE 320
           P+ +F+  +     +   D  S + L        L  LD      +  +  I     + +
Sbjct: 16  PDDNFASEVAAAFEMQATDTISEEQLAT------LTSLDCHNS-SITDMTGIEKLTGLTK 68

Query: 321 MFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
           +      I  L   +     L +L  +  K L +L   +  L  L YL  +   +
Sbjct: 69  LICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTNKL 118

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 21/140 (15%), Positives = 43/140 (30%), Gaps = 26/140 (18%)

Query: 244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGC 303
           +    ++ +A  +   T   S  Q L TL  L+  +   +  +     L  L +L  +  
Sbjct: 18  DNFASEVAAAFEM-QATDTISEEQ-LATLTSLDCHNSS-ITDMTGIEKLTGLTKLICTSN 74

Query: 304 SKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSL-------- 355
             +  L D+S   N+  +  +   +  L              +     L  L        
Sbjct: 75  -NITTL-DLSQNTNLTYLACDSNKLTNLD-------------VTPLTKLTYLNCDTNKLT 119

Query: 356 PSGLCKLKSLKYLTLNGCSI 375
              + +   L YL     ++
Sbjct: 120 KLDVSQNPLLTYLNCARNTL 139

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 23/128 (17%)

Query: 268 HLNTLVVLNLRDCKSLKSLPAGIHLEF--LKELDLSGCSKLKRLPDISSAANIEEMFLNG 325
               +  L++     L  L      +   + ELDLS   KL  L            +LN 
Sbjct: 284 GCRKIKELDVTHNTQLYLL----DCQAAGITELDLSQNPKLVYL------------YLNN 327

Query: 326 TAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWS 385
           T + EL   +    KL  L   +   ++   S + K+ +L          +  +  +  +
Sbjct: 328 TELTELD--VSHNTKLKSLSCVNAH-IQDFSS-VGKIPALNNNFEAEGQTIT-MPKETLT 382

Query: 386 ILPLVLTT 393
              L +  
Sbjct: 383 NNSLTIAV 390

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 10/123 (8%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDI 312
           N+  +  + +F   L  +  ++L+    +  +       LE L+ LDL        L  I
Sbjct: 324 NLLGELYSSNF-YGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDN----ALTTI 377

Query: 313 SSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNG 372
               +I ++FL+G  +  LP  I     L+HL     ++L  L   L ++  L+ L LN 
Sbjct: 378 HFIPSIPDIFLSGNKLVTLPK-INLTANLIHLSENRLENLDILYF-LLRVPHLQILILNQ 435

Query: 373 CSI 375
              
Sbjct: 436 NRF 438

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 29/130 (22%), Positives = 46/130 (35%), Gaps = 12/130 (9%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N        SF   L  L +L L    +  ++      +L  L+ LDL    K+  L   
Sbjct: 34  NYIRTVTASSFP-FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPD 91

Query: 312 -ISSAANIEEMFLNGTAIEEL---PSSIECLYKLLHLDLEDCKSLKSLPSG--LCKLKSL 365
                 ++ E+ L    + +          L  L  LDL   + ++SL       KL SL
Sbjct: 92  AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSL 150

Query: 366 KYLTLNGCSI 375
           K +  +   I
Sbjct: 151 KSIDFSSNQI 160

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 8e-05
 Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 13/136 (9%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISS 314
           N +T     +FS  ++     +L     +     G     +K+ D +  + L R      
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGA--GFGFHNIKDPDQNTFAGLARS----- 266

Query: 315 AANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNG 372
             ++  + L+   +  L S + E L  L  L+L   K +  +       L +L+ L L+ 
Sbjct: 267 --SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSY 323

Query: 373 CSILQRLNFDIWSILP 388
             +   L    +  LP
Sbjct: 324 NLL-GELYSSNFYGLP 338

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 8e-05
 Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 11/104 (10%)

Query: 279 DCK--SLKSLPAGIHLEFLKELDLSGCSKLKRLP--DISSAANIEEMFLNGTAIEEL--P 332
             +  +L  +P    L   + L LS    ++ +          ++ + L           
Sbjct: 10  FYRFCNLTQVPQV--LNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDK 66

Query: 333 SSIECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNGCSI 375
            +   L  L  LDL   K +  L       L  L  L L  C +
Sbjct: 67  EAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGL 109

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 22/127 (17%), Positives = 36/127 (28%), Gaps = 30/127 (23%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCK----SLKSLPAGI--HLEFLKELDLSGCSKLKR 308
           N F+            +L  L L +          L   +   L  L+ L L+    L  
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNS 494

Query: 309 LPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYL 368
           LP          +F +             L  L  L L   + L  L        +L+ L
Sbjct: 495 LP--------PGVFSH-------------LTALRGLSLNSNR-LTVLSHND-LPANLEIL 531

Query: 369 TLNGCSI 375
            ++   +
Sbjct: 532 DISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 28/159 (17%), Positives = 42/159 (26%), Gaps = 27/159 (16%)

Query: 255 NIFTKTPNPSFSQ-HLNTLVVLNLRDCK-------SLKSLPAGIHLEFLKELDLSGCSKL 306
           N                TL   +L                        L+ LD+SG    
Sbjct: 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217

Query: 307 KRLPDISSAA-------------NIEEMFLNGTAIEELPSSI---ECLYKLLHLDLEDCK 350
             +    S A             +I         I++   +         + HLDL    
Sbjct: 218 VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF 277

Query: 351 SLKSLPSG-LCKLKSLKYLTLNGCSILQRLNFDIWSILP 388
            + SL S     LK LK L L    I  ++  + +  L 
Sbjct: 278 -VFSLNSRVFETLKDLKVLNLAYNKI-NKIADEAFYGLD 314

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 33/119 (27%), Positives = 44/119 (36%), Gaps = 27/119 (22%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDI 312
           N  TK     F   L  L  L L     L +LP G+   L  L  LDL   ++L  LP  
Sbjct: 50  NQITKLEPGVF-DSLINLKELYL-GSNQLGALPVGVFDSLTQLTVLDLGT-NQLTVLP-- 104

Query: 313 SSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLN 371
                   +F             + L  L  L +   K L  LP G+ +L  L +L L+
Sbjct: 105 ------SAVF-------------DRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALD 143

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 17/135 (12%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N         F   L  L  L L +   L SLP G+  HL  L +L L G ++LK LP  
Sbjct: 69  NQLQTLSAGVF-DDLTELGTLGLAN-NQLASLPLGVFDHLTQLDKLYLGG-NQLKSLPSG 125

Query: 312 -ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYL 368
                  ++E+ LN   ++ +P+   + L  L  L L   + L+S+P G   +L  L+ +
Sbjct: 126 VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTI 184

Query: 369 TLNG-------CSIL 376
           TL G       C IL
Sbjct: 185 TLFGNQFDCSRCEIL 199

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 39.7 bits (93), Expect = 9e-04
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 9/100 (9%)

Query: 279 DC--KSLKSLPAGIHLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS 334
           DC  KSL S+P+GI  +  ++LDL   + L  L D        +  + L+   ++ L + 
Sbjct: 20  DCQGKSLDSVPSGIPAD-TEKLDLQS-TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG 77

Query: 335 I-ECLYKLLHLDLEDCKSLKSLPSGL-CKLKSLKYLTLNG 372
           + + L +L  L L +   L SLP G+   L  L  L L G
Sbjct: 78  VFDDLTELGTLGLAN-NQLASLPLGVFDHLTQLDKLYLGG 116

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 17/133 (12%)

Query: 243 RNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSG 302
            N LK   I     F         Q +  L  + + D   + ++P G+    L EL L G
Sbjct: 154 TNPLKSSGIEN-GAF---------QGMKKLSYIRIADTN-ITTIPQGL-PPSLTELHLDG 201

Query: 303 CSKLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSGL 359
             K+ ++    +    N+ ++ L+  +I  + + S+     L  L L + K L  +P GL
Sbjct: 202 N-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGL 259

Query: 360 CKLKSLKYLTLNG 372
              K ++ + L+ 
Sbjct: 260 ADHKYIQVVYLHN 272

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 9/126 (7%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDI 312
           N  T+  +  F  +L  L  L L + K +  +  G    L  L+ L LS  ++LK LP+ 
Sbjct: 62  NKITEIKDGDFK-NLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSK-NQLKELPE- 117

Query: 313 SSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCK-SLKSLPSG-LCKLKSLKYLT 369
                ++E+ ++   I ++  S+   L +++ ++L         + +G    +K L Y+ 
Sbjct: 118 KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177

Query: 370 LNGCSI 375
           +   +I
Sbjct: 178 IADTNI 183

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 9/126 (7%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCK-SLKSLPAGI--HLEFLKELDLSGCSKLKRLPD 311
           N  TK     F+  LN ++V+ L         +  G    ++ L  + ++    +  +P 
Sbjct: 131 NEITKVRKSVFN-GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQ 188

Query: 312 ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSGLCK-LKSLKYLT 369
                ++ E+ L+G  I ++ + S++ L  L  L L     + ++ +G       L+ L 
Sbjct: 189 -GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELH 246

Query: 370 LNGCSI 375
           LN   +
Sbjct: 247 LNNNKL 252

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 34/150 (22%)

Query: 254 CNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLS------------ 301
            N  +K    +F+  L  L  L L   + LK LP  +  + L+EL +             
Sbjct: 85  NNKISKISPGAFA-PLVKLERLYLSKNQ-LKELPEKM-PKTLQELRVHENEITKVRKSVF 141

Query: 302 -GCSKLKRL---------PDISSAA-----NIEEMFLNGTAIEELPSSIECLYKLLHLDL 346
            G +++  +           I + A      +  + +  T I  +P  +     L  L L
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHL 199

Query: 347 EDCKSLKSLPSG-LCKLKSLKYLTLNGCSI 375
           +  K +  + +  L  L +L  L L+  SI
Sbjct: 200 DGNK-ITKVDAASLKGLNNLAKLGLSFNSI 228

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.1 bits (122), Expect = 5e-07
 Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 18/142 (12%)

Query: 251 ISACNIFTKTPNP--SFSQHLNTLVVLNLRDC------KSLKSLPAGIHLEFLKELDLSG 302
           +   ++   + +    F     +LV LN+          +L+ L        LK L L+ 
Sbjct: 163 LRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT--RCPNLKSLKLNR 220

Query: 303 CSKLKRLPDI-SSAANIEEMFLNG-------TAIEELPSSIECLYKLLHLDLEDCKSLKS 354
              L++L  +   A  +EE+   G            L  ++    +L  L          
Sbjct: 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAY 280

Query: 355 LPSGLCKLKSLKYLTLNGCSIL 376
           LP+       L  L L+  ++ 
Sbjct: 281 LPAVYSVCSRLTTLNLSYATVQ 302

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.2 bits (112), Expect = 8e-06
 Identities = 26/144 (18%), Positives = 53/144 (36%), Gaps = 16/144 (11%)

Query: 248 EKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLP-------AGI-----HLEFL 295
           E ++  C   T     + +++   +    L   +              G      H + L
Sbjct: 375 ESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDL 434

Query: 296 KELDLSGCSKLKRLPDISSAA-NIEEMFLNGTAI--EELPSSIECLYKLLHLDLEDCKSL 352
           + L LSG    K    I + A  +E + +         +   +     L  L++ DC   
Sbjct: 435 RRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494

Query: 353 -KSLPSGLCKLKSLKYLTLNGCSI 375
            K+L +   KL++++ L ++ CS+
Sbjct: 495 DKALLANASKLETMRSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 30/143 (20%), Positives = 47/143 (32%), Gaps = 22/143 (15%)

Query: 264 SFSQHLNTLVVLNLRDCKSL--KSLPA-GIHLEFLKELDLSGCSKLKRLPDISSAANIEE 320
             ++      VL L  C+      L A       LKELDL        + D+S    +  
Sbjct: 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES----DVDDVSGHW-LSH 178

Query: 321 MFLNGTAIEEL----------PSSIECL----YKLLHLDLEDCKSLKSLPSGLCKLKSLK 366
                T++  L           S++E L      L  L L     L+ L + L +   L+
Sbjct: 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLE 238

Query: 367 YLTLNGCSILQRLNFDIWSILPL 389
            L   G +   R +      + L
Sbjct: 239 ELGTGGYTAEVRPDVYSGLSVAL 261

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 18/136 (13%)

Query: 243 RNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSG 302
            N L+         F           L  L  L + + K L  +P  +  E L EL L  
Sbjct: 156 GNPLENSGFEP-GAF---------DGLK-LNYLRISEAK-LTGIPKDL-PETLNELHLDH 202

Query: 303 CSKLKRLPD--ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGL 359
            +K++ +    +   + +  + L    I  + +     L  L  L L++ K L  +P+GL
Sbjct: 203 -NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGL 260

Query: 360 CKLKSLKYLTLNGCSI 375
             LK L+ + L+  +I
Sbjct: 261 PDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 22/138 (15%), Positives = 46/138 (33%), Gaps = 19/138 (13%)

Query: 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGC 303
           L    IS   + T  P         TL  L+L   K ++++          L  L L   
Sbjct: 174 LNYLRISEAKL-TGIPKDLPE----TLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHN 227

Query: 304 SKLKRLPD--ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSG--- 358
            +++ + +  +S    + E+ L+   +  +P+ +  L  L  + L     +  +      
Sbjct: 228 -QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFC 285

Query: 359 ----LCKLKSLKYLTLNG 372
                 K      ++L  
Sbjct: 286 PVGFGVKRAYYNGISLFN 303

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 49.5 bits (118), Expect = 9e-07
 Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 26/135 (19%)

Query: 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEF----LKELDLS 301
           L    +S C+ F++    +     + L  LNL  C         + +      + +L+LS
Sbjct: 144 LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203

Query: 302 GCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSL--KSLPSGL 359
           G  K                 L  + +  L   +     L+HLDL D   L         
Sbjct: 204 GYRK----------------NLQKSDLSTL---VRRCPNLVHLDLSDSVMLKNDCFQE-F 243

Query: 360 CKLKSLKYLTLNGCS 374
            +L  L++L+L+ C 
Sbjct: 244 FQLNYLQHLSLSRCY 258

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 28/130 (21%)

Query: 264 SFSQHLNTLVVLNLRDCKSL--KSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEM 321
           +  +    LV L+L D   L          L +L+ L LS C        I         
Sbjct: 216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD------IIPE------ 263

Query: 322 FLNGTAIEELPSSIECLYKLLHLDLEDC---KSLKSLPSGLCKLK-SLKYLTLNGC-SIL 376
                 + EL      +  L  L +       +L+ L   L  L+ +  + T     +I 
Sbjct: 264 -----TLLELGE----IPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIG 314

Query: 377 QRLNFDIWSI 386
            + N +IW I
Sbjct: 315 NKKNQEIWGI 324

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 24/137 (17%)

Query: 241 TWRNALKEKII-SACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEF--LKE 297
            W     ++ +    ++  K  +P  +  L +  V+  R  +S    P   H     ++ 
Sbjct: 38  RWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQH 97

Query: 298 LDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPS 357
           +DLS                     +  + +  +   +    KL +L LE  +    + +
Sbjct: 98  MDLSNSV------------------IEVSTLHGI---LSQCSKLQNLSLEGLRLSDPIVN 136

Query: 358 GLCKLKSLKYLTLNGCS 374
            L K  +L  L L+GCS
Sbjct: 137 TLAKNSNLVRLNLSGCS 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 11/111 (9%)

Query: 267 QHLNTLVVLNLRDCK--SLKSLPAGIHLEFLKELDLSGCSKLKRLPDISS-AANIEEMFL 323
             L     L L       + SL     +E L+ L L     +K++ ++ + A  +EE+++
Sbjct: 45  STLKACKHLALSTNNIEKISSLS---GMENLRILSLGRN-LIKKIENLDAVADTLEELWI 100

Query: 324 NGTAIEELPSSIECLYKLLHLDLEDCK--SLKSLPSGLCKLKSLKYLTLNG 372
           +   I  L S IE L  L  L + + K  +   +   L  L  L+ L L G
Sbjct: 101 SYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAG 149

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 21/115 (18%)

Query: 263 PSFSQHLNTLVVLNLRDCK-SLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEM 321
           P+       +  ++  D             L++++++ L  C        I         
Sbjct: 54  PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHY------IEDGC----- 102

Query: 322 FLNGTAIEELPSSIECLYKLLHLDLEDCKSL--KSLPSGLCKLKSLKYLTLNGCS 374
                 +E L         +L +++  C ++  K +   L   ++LKYL L+   
Sbjct: 103 ------LERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLP 150

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 10/99 (10%)

Query: 279 DC--KSLKSLPAGIHLEFLKELDLSGCSKLKRLP--DISSAANIEEMFLNGTAIEELPSS 334
           D   ++L  +P  +     K L LS  + +  L   DIS  + +  + L+   I  L   
Sbjct: 37  DYSNRNLTHVPKDLPPR-TKALSLSQ-NSISELRMPDISFLSELRVLRLSHNRIRSLDFH 94

Query: 335 I-ECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNG 372
           +      L +LD+     L+++      + SL++L L+ 
Sbjct: 95  VFLFNQDLEYLDV-SHNRLQNISCC--PMASLRHLDLSF 130

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 23/161 (14%), Positives = 46/161 (28%), Gaps = 11/161 (6%)

Query: 242 WRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKS--LKSLPAGIHLEF--LKE 297
           W   ++   I    I  +     F+     L  L +   K+         ++  F  +  
Sbjct: 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333

Query: 298 LDLSGCSKLKRLPDI--SSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKS 354
             LS  S    +  +   S ++   +        +        L +L  L L+    LK+
Sbjct: 334 KMLSI-SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR-NGLKN 391

Query: 355 LPSGLCKLKSLKYLTLNGCSI--LQRLNFDIWSILPLVLTT 393
                   K++  L     S+  L    +D        +  
Sbjct: 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 14/126 (11%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDI- 312
           N+FT +     S  L  L  L L+    LK+        + +  L+    S L  L    
Sbjct: 363 NVFTDSVFQGCST-LKRLQTLILQR-NGLKNFFKVALMTKNMSSLETLDVS-LNSLNSHA 419

Query: 313 -----SSAANIEEMFLNGTAIEELPSSIECL-YKLLHLDLEDCKSLKSLPSGLCKLKSLK 366
                + A +I  + L+   +        CL  K+  LDL + + + S+P  +  L++L+
Sbjct: 420 YDRTCAWAESILVLNLSSNMLTGSVF--RCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQ 476

Query: 367 YLTLNG 372
            L +  
Sbjct: 477 ELNVAS 482

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 38/134 (28%)

Query: 279 DC--KSLKSLPAGI------------------------HLEFLKELDLSGCSKLKRLPD- 311
           DC  + LK +P  I                         L  L +L+L   ++L  +   
Sbjct: 14  DCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPN 72

Query: 312 -ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYL 368
               A++I+E+ L    I+E+ + +   L++L  L+L D + +  +  G    L SL  L
Sbjct: 73  AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSL 131

Query: 369 TLNG------CSIL 376
            L        C + 
Sbjct: 132 NLASNPFNCNCHLA 145

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 32/124 (25%)

Query: 279 DC--KSLKSLPAGI------------------------HLEFLKELDLSGCSKLKRLPD- 311
           DC  + L  +P  I                         L  L++++ S   K+  + + 
Sbjct: 17  DCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEG 75

Query: 312 -ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGL-CKLKSLKYL 368
               A+ + E+ L    +E +   + + L  L  L L   + +  + +     L S++ L
Sbjct: 76  AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLL 134

Query: 369 TLNG 372
           +L  
Sbjct: 135 SLYD 138

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.2 bits (112), Expect = 7e-06
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 19/151 (12%)

Query: 243 RNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCK----SLKSLPAGIHLEFLKEL 298
           R A+   I      +        S +L  L  ++ R        L  L A    + L+ L
Sbjct: 85  RAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL-AKARADDLETL 143

Query: 299 DLSGCSKL--KRLPDISSAA-NIEEMFLNGT--------AIEELPSSIECLYKLLHLDLE 347
            L  CS      L  I +    I+ + +  +         + EL      L ++L+  + 
Sbjct: 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL-EVLNFYMT 202

Query: 348 DCK--SLKSLPSGLCKLKSLKYLTLNGCSIL 376
           +    S K L +     +SL  + +    IL
Sbjct: 203 EFAKISPKDLETIARNCRSLVSVKVGDFEIL 233

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.9 bits (111), Expect = 9e-06
 Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 7/155 (4%)

Query: 237 EKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLK 296
           E +     +L    +    I         + +L      +L +   +      ++L F +
Sbjct: 213 ETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEK--YMNLVFPR 270

Query: 297 ELDLSGCSKL--KRLPDISS-AANIEEMFLNGTAI--EELPSSIECLYKLLHLDLEDCKS 351
           +L   G S +    +P +   AA I ++ L    +  E+  + I+    L  L+  +   
Sbjct: 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG 330

Query: 352 LKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSI 386
            + L       K LK L +   +  Q +  +   +
Sbjct: 331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 18/124 (14%)

Query: 268 HLNTLVVLNLRDCKSLKSLP--AGI-----HLEFLKELDLSGCSKLKRLPDIS------S 314
           +L    ++ L   + +  LP   G+       + L+            L D+        
Sbjct: 404 NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG--LTDLGLSYIGQY 461

Query: 315 AANIEEMFLNGTAI--EELPSSIECLYKLLHLDLEDCK-SLKSLPSGLCKLKSLKYLTLN 371
           + N+  M L       E L         L  L++  C  S +++ + + KL SL+YL + 
Sbjct: 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQ 521

Query: 372 GCSI 375
           G   
Sbjct: 522 GYRA 525

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 9e-06
 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 7/100 (7%)

Query: 279 DC--KSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS 333
            C           +   E L EL +     L+ L    +     +  + +  + +  +  
Sbjct: 14  RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73

Query: 334 SI-ECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNG 372
                  +L  L+L     L+SL     +  SL+ L L+G
Sbjct: 74  DAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSG 112

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 5/116 (4%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEM 321
           P      + L  L++   K        I     LK L++S    +  +P      +++ +
Sbjct: 217 PFLG-DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLKSLQYL 274

Query: 322 FLNGTAIE-ELPSSIEC-LYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
            L       E+P  +      L  LDL       ++P        L+ L L+  + 
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 26/121 (21%), Positives = 39/121 (32%), Gaps = 8/121 (6%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD---ISSAANIE 319
            S    L  L  L L +     S+        L  LDLS  S    +     + S + ++
Sbjct: 70  SSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129

Query: 320 EMFL--NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLC---KLKSLKYLTLNGCS 374
            + +  N        S    L  L  LDL       +   G         LK+L ++G  
Sbjct: 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 189

Query: 375 I 375
           I
Sbjct: 190 I 190

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 17/122 (13%), Positives = 40/122 (32%), Gaps = 12/122 (9%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGI---HLEFLKELDLSGC--SKLKRLPDISSAAN 317
             F     +L  L+L        +           LK L++S        ++       +
Sbjct: 94  SGFKC-SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152

Query: 318 IEEMFLNGTAIE-ELPSSIEC---LYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGC 373
           +E + L+  +I               +L HL +   K    +   + +  +L++L ++  
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSN 210

Query: 374 SI 375
           + 
Sbjct: 211 NF 212

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 33/150 (22%), Positives = 55/150 (36%), Gaps = 42/150 (28%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGI---HLEFLKELDLSG-------------CSKL 306
            S +    +L+ L+L        +   +       L+EL L               CS+L
Sbjct: 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420

Query: 307 KRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLK-SLPSGLCKLKSL 365
             L  +S   N    +L+G     +PSS+  L KL  L L     L+  +P  L  +K+L
Sbjct: 421 VSL-HLSF--N----YLSG----TIPSSLGSLSKLRDLKLWLNM-LEGEIPQELMYVKTL 468

Query: 366 KYLTLNG-------------CSILQRLNFD 382
           + L L+              C+ L  ++  
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLS 498

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 9/103 (8%)

Query: 279 DC--KSLKSLPAGIHLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS 334
           DC  K L ++P+ I  +  K+LDL   +KL  LP         +  ++LN   ++ LP+ 
Sbjct: 22  DCSSKKLTAIPSNIPAD-TKKLDLQS-NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79

Query: 335 I-ECLYKLLHLDLEDCKSLKSLPSGL-CKLKSLKYLTLNGCSI 375
           I + L  L  L + D K L++LP G+  +L +L  L L+   +
Sbjct: 80  IFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQL 121

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 279 DC--KSLKSLPAGIHLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS 334
            C  K L S+P GI       L+L   +KL+ LP         + ++ L+   I+ LP  
Sbjct: 13  RCNSKGLTSVPTGIPSS-ATRLELES-NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG 70

Query: 335 I-ECLYKLLHLDLEDCKSLKSLPSGLC-KLKSLKYLTLN 371
           + + L KL  L L + K L+SLP+G+  KL  LK L L+
Sbjct: 71  VFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALD 108

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 21/116 (18%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 263 PSFSQHLNTLVVLNLRDCK--SLKSLPAGI-HLEFLKELDLSGCSKLK-RLPD-ISSAAN 317
                    +  L+L          +P+ + +L +L  L + G + L   +P  I+    
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 318 IEEMFLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNG 372
           +  +++  T +   +P  +  +  L+ LD        +LP  +  L +L  +T +G
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 42.2 bits (100), Expect = 7e-05
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 13/106 (12%)

Query: 279 DC--KSLKSLPAGIHLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS 334
           +C    L S+PAGI  +  + L L+  +++ +L         N+++++ N   +  +P+ 
Sbjct: 18  NCQNIRLASVPAGIPTD-KQRLWLNN-NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTG 75

Query: 335 I-ECLYKLLHLDLEDCKSLKSLPSGLC-KLKSLKYLTLNG----CS 374
           + + L +L  LDL D   LKS+P G    LKSL ++ L      C 
Sbjct: 76  VFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNPWDCE 120

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 8/99 (8%)

Query: 279 DC--KSLKSLPAGIHLEFLKELDLSGCSKLKRLP-DISSAANIEEMFLNGTAIEELPSSI 335
            C  K LK LP GI  + + EL L G ++   +P ++S+  ++  + L+   I  L +  
Sbjct: 16  RCSNKGLKVLPKGIPRD-VTELYLDG-NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQS 73

Query: 336 -ECLYKLLHLDLEDCKSLKSLPSGLC-KLKSLKYLTLNG 372
              + +LL L L   + L+ +P      LKSL+ L+L+G
Sbjct: 74  FSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHG 111

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 11/62 (17%), Positives = 25/62 (40%)

Query: 153 GDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPA 212
           G  I   L  A+ +S   +++ + G+    W   ++++ L          +P+  G+  A
Sbjct: 51  GGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRA 110

Query: 213 PV 214
             
Sbjct: 111 AY 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 13/106 (12%)

Query: 279 DC--KSLKSLPAGIHLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS 334
           DC  KSL S+P GI     + L L   +++ +L          +  + L+   +  LP+ 
Sbjct: 15  DCSGKSLASVPTGIPTT-TQVLYLYD-NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG 72

Query: 335 I-ECLYKLLHLDLEDCKSLKSLPSGLC-KLKSLKYLTLNG----CS 374
           + + L +L  L L D + LKS+P G    LKSL ++ L      C+
Sbjct: 73  VFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPWDCA 117

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 31/122 (25%)

Query: 279 DC--KSLKSLPAGI-----------------------HLEFLKELDLSGCSKLKRLPD-- 311
           +C  +   S+P GI                        L  L +L L G +KL+ LP+  
Sbjct: 13  ECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG-NKLQSLPNGV 71

Query: 312 ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGLC-KLKSLKYLT 369
            +   ++  + L+   ++ LP+ + + L +L  L L   + L+SLP G+  KL  LK L 
Sbjct: 72  FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLR 130

Query: 370 LN 371
           L 
Sbjct: 131 LY 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	437
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	99.93
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.83
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.76
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.75
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.75
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.74
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.73
2js7_A	160	Myeloid differentiation primary response protein M	99.69
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.65
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.61
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.61
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.61
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.61
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.6
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.6
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.6
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.59
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.58
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.57
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.57
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.57
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.55
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.55
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.55
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.55
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.54
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.54
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.54
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.53
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.53
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.53
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.53
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.52
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.52
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.52
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.52
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.52
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.52
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.52
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.51
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.5
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.5
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.49
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.49
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.49
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.49
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.49
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.49
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.49
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.48
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.48
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.48
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.47
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.47
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.47
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.47
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.46
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.46
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.46
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.46
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.46
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.46
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.46
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.45
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.45
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.45
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.45
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.44
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.44
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.44
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.44
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.44
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.44
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.44
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.43
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.43
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.43
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.43
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.42
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.42
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.41
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.4
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.4
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.4
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.4
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.4
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.38
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.38
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.37
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.37
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.36
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.34
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.34
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.34
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.34
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.33
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.32
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.32
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.31
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.31
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.31
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.29
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.28
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.28
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.27
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.27
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.26
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.22
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.0
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.96
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.96
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.94
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.91
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.91
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.83
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.8
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.79
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.76
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.68
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.67
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.64
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.6
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.45
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.38
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.34
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.1
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.03
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.99
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.95
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.94
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.9
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.89
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.87
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.79
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.52
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.2
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.02
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.0
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.89
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.58
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.36
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.8
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.73
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.63
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	94.1
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.8

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=6.6e-39  Score=291.09  Aligned_cols=137  Identities=36%  Similarity=0.624  Sum_probs=127.1

Q ss_pred             CCCCceeeccCCCcccCchHHHHHHHHhcCCceEEe-----cCCCchHHHHHHHHHhcceEEEEecCccccccccHhhHH
Q 013724          115 DSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLV  189 (437)
Q Consensus       115 ~~~~dvf~sf~g~d~r~~f~~~l~~~L~~~g~~~~~-----~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wcl~EL~  189 (437)
                      .++|||||||||+|+|++|++||+++|+++||++|+     ++|+.|.++|++||++||++|+|||++|++|.||++||+
T Consensus        33 ~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~  112 (204)
T 3ozi_A           33 SVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELA  112 (204)
T ss_dssp             -CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHH
T ss_pred             CcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHH
Confidence            458899999999999999999999999999999999     689999999999999999999999999999999999999


Q ss_pred             hhhhhccc-cCeEEEeeeecCCCCCCCCCCCccCCchhhhhhhhhcChHHHHHHHHhhhhh-hccc
Q 013724          190 KILQCKRV-YGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEK-IISA  253 (437)
Q Consensus       190 ~il~c~~~-~~~~vlPiFy~VdpS~Vr~q~gsf~~af~~le~~~~~~~e~l~~W~~aL~~L-~Ls~  253 (437)
                      +|++|.+. +++.|+||||+|+|++||+|+|.||++|.+++..+  ..+++++|+.+|++. +|++
T Consensus       113 ~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG  176 (204)
T 3ozi_A          113 EIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKG  176 (204)
T ss_dssp             HHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCB
T ss_pred             HHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCc
Confidence            99999864 68999999999999999999999999999999876  457899999999984 4444

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=6.4e-39  Score=286.62  Aligned_cols=137  Identities=38%  Similarity=0.668  Sum_probs=117.4

Q ss_pred             CCCCceeeccCCCcccCchHHHHHHHHhcCCceEEe-----cCCCchHHHHHHHHHhcceEEEEecCccccccccHhhHH
Q 013724          115 DSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLV  189 (437)
Q Consensus       115 ~~~~dvf~sf~g~d~r~~f~~~l~~~L~~~g~~~~~-----~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wcl~EL~  189 (437)
                      .++|||||||||+|+|++|++||+++|+++||++|+     ++|+.|.++|++||++||++|+|||+||++|.||++||+
T Consensus         6 ~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~   85 (176)
T 3jrn_A            6 ATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELV   85 (176)
T ss_dssp             -CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHH
T ss_pred             CCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHH
Confidence            348899999999999999999999999999999999     689999999999999999999999999999999999999


Q ss_pred             hhhhhccccCeEEEeeeecCCCCCCCCCCCccCCchhhhhhhhhcChHHHHHHHHhhhhh-hccc
Q 013724          190 KILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEK-IISA  253 (437)
Q Consensus       190 ~il~c~~~~~~~vlPiFy~VdpS~Vr~q~gsf~~af~~le~~~~~~~e~l~~W~~aL~~L-~Ls~  253 (437)
                      +|++|.+..++.|+||||+|+|++||+|+|.||++|.+++..  ...+++++|+.+|++. ++++
T Consensus        86 ~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G  148 (176)
T 3jrn_A           86 TIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSG  148 (176)
T ss_dssp             HHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccc
Confidence            999999889999999999999999999999999999999986  5788999999999984 3444

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=99.93  E-value=2.4e-26  Score=203.03  Aligned_cols=115  Identities=17%  Similarity=0.257  Sum_probs=108.1

Q ss_pred             CCCCceeeccCCCcccCchHHHHHHHHhcCCceEEe-----cCCCchHHHHHHHHHhcceEEEEecCccccccccHhhHH
Q 013724          115 DSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLV  189 (437)
Q Consensus       115 ~~~~dvf~sf~g~d~r~~f~~~l~~~L~~~g~~~~~-----~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wcl~EL~  189 (437)
                      .++|||||||+|+| |..|+.||+++|+++|+++|+     .+|+.|.++|.++|++|+++|+|+|++|++|.||++|+.
T Consensus        18 ~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~   96 (154)
T 3h16_A           18 APPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELD   96 (154)
T ss_dssp             CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHH
T ss_pred             CCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHH
Confidence            45889999999999 689999999999999999999     689999999999999999999999999999999999999


Q ss_pred             hhhhhccccCeEEEeeeecCCCCCCCCCCCccCCchhhhhh
Q 013724          190 KILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEE  230 (437)
Q Consensus       190 ~il~c~~~~~~~vlPiFy~VdpS~Vr~q~gsf~~af~~le~  230 (437)
                      .+++|...+++.|+||||+++|++|+++.|.|+++|.....
T Consensus        97 ~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~  137 (154)
T 3h16_A           97 GLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS  137 (154)
T ss_dssp             HHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT
T ss_pred             HHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC
Confidence            99999888888999999999999999999999998876543

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.83  E-value=2.9e-22  Score=174.87  Aligned_cols=130  Identities=17%  Similarity=0.253  Sum_probs=94.4

Q ss_pred             CCCCCCCceeeccCCCcccCchHHHHHHHHhc--CCceEEe-----cCCCchHHHHHHHHHhcceEEEEecCcccccccc
Q 013724          112 AHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQ--KSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWF  184 (437)
Q Consensus       112 ~~~~~~~dvf~sf~g~d~r~~f~~~l~~~L~~--~g~~~~~-----~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wc  184 (437)
                      .++.++|||||||+++|+  .|+.+|+.+|++  +|+++|+     .+|+.|.++|.+||++||++|+|+|++|++|.||
T Consensus         5 ~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc   82 (146)
T 3ub2_A            5 SRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC   82 (146)
T ss_dssp             CTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred             CCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence            456789999999999999  478999999999  6999998     6899999999999999999999999999999999


Q ss_pred             HhhHHhhhhhccccCeEEEeeeecCCCCCC----CCCCCccCCchhhhhhhhhcChHHHHHHHHhh
Q 013724          185 FDKLVKILQCKRVYGQIVLPVFYGVDPAPV----KWPTGSYGDSFLKLEERFKENSEKLQTWRNAL  246 (437)
Q Consensus       185 l~EL~~il~c~~~~~~~vlPiFy~VdpS~V----r~q~gsf~~af~~le~~~~~~~e~l~~W~~aL  246 (437)
                      ..|+..++.+.......++|+||++++.++    +....   ..+...+..+....+.|.+|..+|
T Consensus        83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~---id~~~~d~~f~~l~~~v~~~~~~~  145 (146)
T 3ub2_A           83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYY---VDGRGPDGGFRQVKEAVMRYLQTL  145 (146)
T ss_dssp             HHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCC---EETTSGGGGHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeee---eeccChHhhHHHHHHHHHHHHHhc
Confidence            999999999863333356799999985554    33322   223344555555566777787654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.76  E-value=4.3e-18  Score=168.00  Aligned_cols=130  Identities=31%  Similarity=0.459  Sum_probs=62.2

Q ss_pred             ccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCC---------CCCCCEEEeeCCCCcccChh
Q 013724          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISS---------AANIEEMFLNGTAIEELPSS  334 (437)
Q Consensus       266 ~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~---------l~~L~~L~Ls~n~l~~lp~~  334 (437)
                      +..+++|++|+|++|. +..+|..+ .+++|++|+|++|+..+.+|. +..         +++|++|+|++|.|+.+|..
T Consensus       123 ~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~  201 (328)
T 4fcg_A          123 MQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS  201 (328)
T ss_dssp             GGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG
T ss_pred             HhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh
Confidence            3444555555555554 33444444 445555555555444444443 222         44455555555544444444


Q ss_pred             hcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724          335 IECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV  397 (437)
Q Consensus       335 i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~  397 (437)
                      ++.+++|+.|+|++|. +..+|..++.+++|++|++++|+..+.+|..++.+++|+.|++.+|
T Consensus       202 l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n  263 (328)
T 4fcg_A          202 IANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC  263 (328)
T ss_dssp             GGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC
T ss_pred             hcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC
Confidence            4445555555555444 3344444444445555555544444444444444444544444333

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.75  E-value=3.7e-19  Score=155.90  Aligned_cols=93  Identities=14%  Similarity=0.199  Sum_probs=84.0

Q ss_pred             CCCCceeeccCCCcccCchHHH-HHHHHhcC--CceEEe-----cCCCchHHHHHHHHHhcceEEEEecCccccccccHh
Q 013724          115 DSYEGVPTAIPSEDTRDNFTSH-LYSALSQK--SIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFD  186 (437)
Q Consensus       115 ~~~~dvf~sf~g~d~r~~f~~~-l~~~L~~~--g~~~~~-----~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wcl~  186 (437)
                      +++|||||||+|+|+  .|+.+ |+++|+++  |+++|+     .+|+.|.++|.++|++||++|+|+|++|++|.||..
T Consensus         3 ~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~   80 (149)
T 1fyx_A            3 NIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKY   80 (149)
T ss_dssp             SCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHH
T ss_pred             CccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHH
Confidence            468999999999999  79996 99999986  999998     689999999999999999999999999999999999


Q ss_pred             hHHhhhh-hccccCeEEEeeeecC
Q 013724          187 KLVKILQ-CKRVYGQIVLPVFYGV  209 (437)
Q Consensus       187 EL~~il~-c~~~~~~~vlPiFy~V  209 (437)
                      |+..++. +....++.++||||+-
T Consensus        81 El~~a~~~~~~~~~~~vIpv~~~~  104 (149)
T 1fyx_A           81 ELDFSHFRLFDENNDAAILILLEP  104 (149)
T ss_dssp             HSCCSCCTTCGGGTTCCEEEESSC
T ss_pred             HHHHHHHHHHhcCCCEEEEEEecC
Confidence            9999885 4455667799999953

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.75  E-value=1.2e-18  Score=156.92  Aligned_cols=98  Identities=16%  Similarity=0.221  Sum_probs=82.8

Q ss_pred             CCCCCCCceeeccCCCcccCchHH-HHHHHHhc--CCceEEe-----cCCCchHHHHHHHHHhcceEEEEecCccccccc
Q 013724          112 AHFDSYEGVPTAIPSEDTRDNFTS-HLYSALSQ--KSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRW  183 (437)
Q Consensus       112 ~~~~~~~dvf~sf~g~d~r~~f~~-~l~~~L~~--~g~~~~~-----~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~W  183 (437)
                      ....++|||||||+|+|+  .|+. +|+.+|++  +|+++|+     .+|+.|.++|.++|++||++|+|+|++|++|.|
T Consensus        30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w  107 (178)
T 2j67_A           30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW  107 (178)
T ss_dssp             CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred             cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence            345678999999999998  8997 59999998  8999998     689999999999999999999999999999999


Q ss_pred             cHhhHHhhhhhc-cccCeEEEeeeecCCC
Q 013724          184 FFDKLVKILQCK-RVYGQIVLPVFYGVDP  211 (437)
Q Consensus       184 cl~EL~~il~c~-~~~~~~vlPiFy~Vdp  211 (437)
                      |..|+..++.+. +..++.++||||+--+
T Consensus       108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~  136 (178)
T 2j67_A          108 CHYEFYFAHHNLFHENSDHIILILLEPIP  136 (178)
T ss_dssp             GGTHHHHTTCC-------CEEEEESSCCC
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEEecCCC
Confidence            999999998754 4566789999997443

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.74  E-value=1.6e-18  Score=153.33  Aligned_cols=96  Identities=13%  Similarity=0.125  Sum_probs=85.2

Q ss_pred             CCCceeeccCCCcc---------cCchHHHHHH-HHh-cCCceEEe-----cCCCchHHHHHHHHHhcceEEEEecCccc
Q 013724          116 SYEGVPTAIPSEDT---------RDNFTSHLYS-ALS-QKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYA  179 (437)
Q Consensus       116 ~~~dvf~sf~g~d~---------r~~f~~~l~~-~L~-~~g~~~~~-----~~g~~i~~~l~~~i~~S~~~i~i~S~~~~  179 (437)
                      |+|||||||+|+|+         |+.||.|++. +|+ ++|+++|+     .+|+.|.++|.++|++||.+|+|+|++|+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            57999999999997         5689999776 699 79999999     68999999999999999999999999997


Q ss_pred             -cccccHhhHHhhhhhc-cccCeEEEeeeecCCC
Q 013724          180 -SSRWFFDKLVKILQCK-RVYGQIVLPVFYGVDP  211 (437)
Q Consensus       180 -sS~Wcl~EL~~il~c~-~~~~~~vlPiFy~Vdp  211 (437)
                       .|.||..|+..++.+. ...+..++||+|.-.+
T Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~  114 (159)
T 1t3g_A           81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR  114 (159)
T ss_dssp             HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred             hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence             9999999999999886 5567789999987544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.73  E-value=1.2e-17  Score=164.68  Aligned_cols=173  Identities=24%  Similarity=0.296  Sum_probs=143.0

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-C---------CCCccEEeeeCCCCCCCCCC-CC
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-H---------LEFLKELDLSGCSKLKRLPD-IS  313 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~---------l~~L~~L~Ls~n~~~~~lp~-l~  313 (437)
                      .|+.|++++|... .  .|..+..+++|++|++++|..++.+|..+ .         +++|++|+|++|.+. .+|. +.
T Consensus       128 ~L~~L~Ls~n~l~-~--lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~  203 (328)
T 4fcg_A          128 GLETLTLARNPLR-A--LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA  203 (328)
T ss_dssp             TCSEEEEESCCCC-C--CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGG
T ss_pred             CCCEEECCCCccc-c--CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhc
Confidence            4778899888665 2  34457789999999999988888888876 3         899999999998755 7776 88


Q ss_pred             CCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceee
Q 013724          314 SAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTT  393 (437)
Q Consensus       314 ~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~  393 (437)
                      .+++|++|+|++|.++.+|..++.+++|+.|+|++|...+.+|..++.+++|++|+|++|+.++.+|..+.++++|+.|+
T Consensus       204 ~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~  283 (328)
T 4fcg_A          204 NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD  283 (328)
T ss_dssp             GCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred             CCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence            99999999999999999999999999999999999998999999999999999999999999999999999999999999


Q ss_pred             cccccchhhccccccCCCcccccccccCCC
Q 013724          394 FIYVYKFFVETSAASGDDWKSAFDAAADGP  423 (437)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~  423 (437)
                      +.+|...  ...+.....++++..+.....
T Consensus       284 L~~n~~~--~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          284 LRGCVNL--SRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CTTCTTC--CCCCGGGGGSCTTCEEECCGG
T ss_pred             CCCCCch--hhccHHHhhccCceEEeCCHH
Confidence            8776543  344555555565555554443

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.69  E-value=2.3e-18  Score=152.48  Aligned_cols=95  Identities=14%  Similarity=0.110  Sum_probs=85.1

Q ss_pred             CCCCceeeccCCCcccCchHHHHHHHHhcC--CceEEe-----cCCCchHHHHHHHHH-hcceEEEEecCccccccccHh
Q 013724          115 DSYEGVPTAIPSEDTRDNFTSHLYSALSQK--SIETFI-----NRGDEISQSLVDAIE-ASAISLIIFSEGYASSRWFFD  186 (437)
Q Consensus       115 ~~~~dvf~sf~g~d~r~~f~~~l~~~L~~~--g~~~~~-----~~g~~i~~~l~~~i~-~S~~~i~i~S~~~~sS~Wcl~  186 (437)
                      .++|||||||+|+|.  .|+.+|+.+|++.  |+++|+     .+|+.|.++|.++|+ .||++|+|+|++|++|.||..
T Consensus        14 ~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~   91 (160)
T 2js7_A           14 PERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDF   91 (160)
T ss_dssp             TTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHH
T ss_pred             CcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHH
Confidence            458899999999997  8999999999994  699998     679999999999999 799999999999999999999


Q ss_pred             hHHhhhhhc-cccCeEEEeeeecCCC
Q 013724          187 KLVKILQCK-RVYGQIVLPVFYGVDP  211 (437)
Q Consensus       187 EL~~il~c~-~~~~~~vlPiFy~Vdp  211 (437)
                      |+..++.+. +..++.++||+|+.-+
T Consensus        92 El~~a~~~~~~~~~~~vIpV~~~~~~  117 (160)
T 2js7_A           92 QTKFALSLSPGAHQKRLIPIKYKAMK  117 (160)
T ss_dssp             HHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred             HHHHHHHHHHccCCCEEEEEEEcccc
Confidence            999999875 3455689999997653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.65  E-value=1.1e-16  Score=156.64  Aligned_cols=176  Identities=16%  Similarity=0.127  Sum_probs=118.1

Q ss_pred             hhhhhhccc-CcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724          245 ALKEKIISA-CNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM  321 (437)
Q Consensus       245 aL~~L~Ls~-~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L  321 (437)
                      .|+.|++++ ++..+..  |..+..+++|++|++++|.+.+.+|..+ .+++|++|+|++|.+.+.+|. +..+++|++|
T Consensus        77 ~L~~L~L~~~n~l~~~~--p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           77 YLNFLYIGGINNLVGPI--PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             TCSEEEEEEETTEESCC--CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CCCeeeCCCCCcccccC--ChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence            466677774 4433332  2345667777777777777555667666 777777777777776666665 7777777777


Q ss_pred             EeeCCCCc-ccChhhcCCC-CCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724          322 FLNGTAIE-ELPSSIECLY-KLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       322 ~Ls~n~l~-~lp~~i~~L~-~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~  399 (437)
                      +|++|.++ .+|..++.++ +|+.|++++|...+.+|..+..++ |+.|++++|...+.+|..+..+++|+.|++.++..
T Consensus       155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  233 (313)
T 1ogq_A          155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence            77777777 6777777776 777777777775556777777776 77777777776667777778888888888766544


Q ss_pred             hhhccccccCCCcccccccccCCCCCC
Q 013724          400 FFVETSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                      ..  .. ......+.++.+..+++.+.
T Consensus       234 ~~--~~-~~~~~l~~L~~L~Ls~N~l~  257 (313)
T 1ogq_A          234 AF--DL-GKVGLSKNLNGLDLRNNRIY  257 (313)
T ss_dssp             CC--BG-GGCCCCTTCCEEECCSSCCE
T ss_pred             ee--ec-CcccccCCCCEEECcCCccc
Confidence            21  11 11334566666666666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.61  E-value=1.1e-14  Score=139.26  Aligned_cols=126  Identities=28%  Similarity=0.345  Sum_probs=60.0

Q ss_pred             cccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChh-hcCCCCCC
Q 013724          267 QHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSS-IECLYKLL  342 (437)
Q Consensus       267 ~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L~  342 (437)
                      ..+++|++|++++|. +..+|...  .+++|++|+|++|.+....+. +..+++|++|+|++|.|+.+|.. +..+++|+
T Consensus        82 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  160 (270)
T 2o6q_A           82 KELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK  160 (270)
T ss_dssp             SSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccc
Confidence            344555555555554 33333322  455555555555443333333 44555555555555555544433 44555555


Q ss_pred             EEeccCCCCCCCCcc-ccCCCCCCCEEeeeCCCCCCccc-hhccCCCCCceeecc
Q 013724          343 HLDLEDCKSLKSLPS-GLCKLKSLKYLTLNGCSILQRLN-FDIWSILPLVLTTFI  395 (437)
Q Consensus       343 ~L~L~~n~~l~~LP~-~l~~L~~L~~L~Ls~c~~l~~lP-~~l~~L~~L~~L~~~  395 (437)
                      .|+|++|. ++.+|. .+..+++|++|+|++|... .+| ..+..+++|+.|++.
T Consensus       161 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~  213 (270)
T 2o6q_A          161 ELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQ  213 (270)
T ss_dssp             EEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECC
T ss_pred             eeEecCCc-CcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEec
Confidence            55555554 333332 3445555555555554332 233 234455555555543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.61  E-value=7e-16  Score=150.95  Aligned_cols=177  Identities=18%  Similarity=0.115  Sum_probs=139.8

Q ss_pred             HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCC-CCCE
Q 013724          244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAA-NIEE  320 (437)
Q Consensus       244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~-~L~~  320 (437)
                      ..|+.|++++|...+..+  ..+..+++|++|++++|.+.+.+|..+ .+++|++|+|++|.+.+.+|. +..++ +|+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~  178 (313)
T 1ogq_A          101 TQLHYLYITHTNVSGAIP--DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS  178 (313)
T ss_dssp             TTCSEEEEEEECCEEECC--GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCE
T ss_pred             CCCCEEECcCCeeCCcCC--HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcE
Confidence            357778888887654433  356778999999999998666888888 899999999999987767776 88887 8999


Q ss_pred             EEeeCCCCc-ccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724          321 MFLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       321 L~Ls~n~l~-~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~  399 (437)
                      |+|++|.++ .+|..+..++ |+.|+|++|...+.+|..+..+++|+.|++++|...+.+|. +..+++|+.|++.++..
T Consensus       179 L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l  256 (313)
T 1ogq_A          179 MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRI  256 (313)
T ss_dssp             EECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCC
T ss_pred             EECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcc
Confidence            999999998 7888888887 99999999986667888899999999999999887766665 78889999999866654


Q ss_pred             hhhccccccCCCcccccccccCCCCCC
Q 013724          400 FFVETSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                      .  ...+.....++.++.+..+++.+.
T Consensus       257 ~--~~~p~~l~~l~~L~~L~Ls~N~l~  281 (313)
T 1ogq_A          257 Y--GTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             E--ECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             c--CcCChHHhcCcCCCEEECcCCccc
Confidence            2  233444445566666666665443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.61  E-value=1.3e-15  Score=166.66  Aligned_cols=81  Identities=16%  Similarity=0.194  Sum_probs=40.5

Q ss_pred             CCCCEEEeeCCCCc-ccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeec
Q 013724          316 ANIEEMFLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTF  394 (437)
Q Consensus       316 ~~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~  394 (437)
                      ++|+.|+|++|.++ .+|..++.|++|+.|+|++|...+.+|..++++++|+.|+|++|...+.+|..++.++.|+.|++
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l  711 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL  711 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence            33444444444444 44444555555555555555544455555555555555555555544555555555555555554


Q ss_pred             cc
Q 013724          395 IY  396 (437)
Q Consensus       395 ~~  396 (437)
                      .+
T Consensus       712 s~  713 (768)
T 3rgz_A          712 SN  713 (768)
T ss_dssp             CS
T ss_pred             cC
Confidence            33

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.61  E-value=7.9e-15  Score=138.59  Aligned_cols=150  Identities=23%  Similarity=0.267  Sum_probs=121.2

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCcc-C-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM  321 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~-~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L  321 (437)
                      .++.|++++|...+..+  ..+..+++|++|+|++|. +..++.. + .+++|++|+|++|.+....+. +..+++|++|
T Consensus        36 ~l~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  112 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSD--ATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL  112 (251)
T ss_dssp             TCCEEECTTSCCCCCCT--TTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCEEEccCCCcCccCH--hHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEE
Confidence            46778888877654332  346678999999999998 4455544 4 899999999999886655555 7899999999


Q ss_pred             EeeCCCCcccChh-hcCCCCCCEEeccCCCCCCCCcc-ccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccccc
Q 013724          322 FLNGTAIEELPSS-IECLYKLLHLDLEDCKSLKSLPS-GLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVY  398 (437)
Q Consensus       322 ~Ls~n~l~~lp~~-i~~L~~L~~L~L~~n~~l~~LP~-~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~  398 (437)
                      +|++|.|+.+|.. +..+++|+.|+|++|. ++.+|. .+..+++|++|+|++|...+..+..+..+++|+.|++.++.
T Consensus       113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             EcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence            9999999988775 5889999999999998 666665 68999999999999987665555678899999999987644

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.60  E-value=4.3e-15  Score=142.80  Aligned_cols=131  Identities=21%  Similarity=0.188  Sum_probs=64.4

Q ss_pred             ccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCC
Q 013724          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPS-SIECLYKLL  342 (437)
Q Consensus       266 ~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~  342 (437)
                      +..+++|++|++++|.+.+..|..+ .+++|++|+|++|.+....+. +..+++|+.|+|++|.++.+|. .+..+++|+
T Consensus       101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  180 (285)
T 1ozn_A          101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD  180 (285)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence            3345555555555555222222233 455555555555543333333 4555555555555555555443 245555555


Q ss_pred             EEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccc
Q 013724          343 HLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIY  396 (437)
Q Consensus       343 ~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~  396 (437)
                      .|+|++|...+..|..+..+++|+.|++++|...+..+..+..+++|+.|++.+
T Consensus       181 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  234 (285)
T 1ozn_A          181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND  234 (285)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred             EEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccC
Confidence            555555553333345555555555555555543333333455555555555543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.60  E-value=1.5e-14  Score=138.50  Aligned_cols=147  Identities=24%  Similarity=0.226  Sum_probs=80.7

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCcc-C-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM  321 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~-~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L  321 (437)
                      .|+.|++++|...+.    ..+..+++|++|++++|. +..++.. + .+++|++|+|++|.+....+. +..+++|++|
T Consensus        64 ~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  138 (272)
T 3rfs_A           64 NVRYLALGGNKLHDI----SALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL  138 (272)
T ss_dssp             TCCEEECTTSCCCCC----GGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCcEEECCCCCCCCc----hhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence            355555555543321    134455666666666665 3344433 2 566666666666654443333 5566666666


Q ss_pred             EeeCCCCcccChh-hcCCCCCCEEeccCCCCCCCCcc-ccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724          322 FLNGTAIEELPSS-IECLYKLLHLDLEDCKSLKSLPS-GLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV  397 (437)
Q Consensus       322 ~Ls~n~l~~lp~~-i~~L~~L~~L~L~~n~~l~~LP~-~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~  397 (437)
                      +|++|.++.+|.. ++.+++|+.|++++|. ++.+|. .++.+++|++|++++|...+..|..+..+++|+.|++.++
T Consensus       139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             ECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence            6666666655443 4566666666666665 333333 3456666666666666544444444566666666665443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.60  E-value=3.6e-15  Score=163.19  Aligned_cols=83  Identities=10%  Similarity=0.015  Sum_probs=43.7

Q ss_pred             CCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCccccccc
Q 013724          339 YKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDA  418 (437)
Q Consensus       339 ~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~  418 (437)
                      ++|+.|+|++|...+.+|..++++++|+.|+|++|...+.+|..++++++|+.|++.++.  +....+......+.++.+
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~--l~g~ip~~l~~l~~L~~L  709 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK--LDGRIPQAMSALTMLTEI  709 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC--CEECCCGGGGGCCCCSEE
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc--ccCcCChHHhCCCCCCEE
Confidence            445555555555445555556666666666666666555666666666666666654332  222333333444445555


Q ss_pred             ccCCC
Q 013724          419 AADGP  423 (437)
Q Consensus       419 ~~s~~  423 (437)
                      ..+.+
T Consensus       710 ~ls~N  714 (768)
T 3rgz_A          710 DLSNN  714 (768)
T ss_dssp             ECCSS
T ss_pred             ECcCC
Confidence            44444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.59  E-value=1.7e-14  Score=138.55  Aligned_cols=178  Identities=19%  Similarity=0.184  Sum_probs=132.2

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCc-CccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM  321 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~l-p~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L  321 (437)
                      .|+.|++++|......  +..+..+++|++|++++|..++.+ |..+ .+++|++|+|++|.+....|. +..+++|++|
T Consensus        57 ~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  134 (285)
T 1ozn_A           57 NLTILWLHSNVLARID--AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL  134 (285)
T ss_dssp             TCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCEEECCCCccceeC--HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence            5777888877554322  234567888999999988656666 4445 888999999998876665565 7888999999


Q ss_pred             EeeCCCCcccChh-hcCCCCCCEEeccCCCCCCCCcc-ccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724          322 FLNGTAIEELPSS-IECLYKLLHLDLEDCKSLKSLPS-GLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       322 ~Ls~n~l~~lp~~-i~~L~~L~~L~L~~n~~l~~LP~-~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~  399 (437)
                      +|++|.++.+|.. ++.+++|+.|+|++|. ++.+|. .+..+++|++|++++|...+..|..+..+++|+.|++.++..
T Consensus       135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  213 (285)
T 1ozn_A          135 YLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL  213 (285)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC
Confidence            9999988877654 7888999999999887 666665 478889999999998887776788888899999998866543


Q ss_pred             hhhccccccCCCcccccccccCCCCCCc
Q 013724          400 FFVETSAASGDDWKSAFDAAADGPVKPS  427 (437)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~s~~~~~~  427 (437)
                      .  ...+.....++.++.+..+++.+.+
T Consensus       214 ~--~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          214 S--ALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             S--CCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             C--cCCHHHcccCcccCEEeccCCCccC
Confidence            3  2222234556777888888876664

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.58  E-value=4.6e-15  Score=135.11  Aligned_cols=128  Identities=16%  Similarity=0.238  Sum_probs=77.8

Q ss_pred             cccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcc-cChhhcCCCCCCEE
Q 013724          267 QHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEE-LPSSIECLYKLLHL  344 (437)
Q Consensus       267 ~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~-lp~~i~~L~~L~~L  344 (437)
                      ..+++|+.|++++|. +..+| .+ .+++|++|++++| .+..++.+..+++|++|+|++|.++. .|..++.+++|+.|
T Consensus        41 ~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            445666666666665 44555 33 6666666666666 33444456666666666666666663 45566666666666


Q ss_pred             eccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccccc
Q 013724          345 DLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVY  398 (437)
Q Consensus       345 ~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~  398 (437)
                      ++++|......|..+..+++|++|++++|..++.+| .+..+++|+.|++.+|.
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~  170 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG  170 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC
Confidence            666666444455556666666666666665555565 46666666666665543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.57  E-value=2.4e-14  Score=137.05  Aligned_cols=174  Identities=20%  Similarity=0.112  Sum_probs=113.0

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEe
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFL  323 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~L  323 (437)
                      .|+.+++.+|.... .   ..+..+++|++|++++|. +..++....+++|++|+|++|.+....+. +..+++|++|+|
T Consensus        42 ~L~~L~l~~~~i~~-~---~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           42 SIDQIIANNSDIKS-V---QGIQYLPNVRYLALGGNK-LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             TCCEEECTTSCCCC-C---TTGGGCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ceeeeeeCCCCccc-c---cccccCCCCcEEECCCCC-CCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            45666666654322 1   125567788888888877 55554322778888888888765544444 677888888888


Q ss_pred             eCCCCcccChh-hcCCCCCCEEeccCCCCCCCCcc-ccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchh
Q 013724          324 NGTAIEELPSS-IECLYKLLHLDLEDCKSLKSLPS-GLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFF  401 (437)
Q Consensus       324 s~n~l~~lp~~-i~~L~~L~~L~L~~n~~l~~LP~-~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~  401 (437)
                      ++|.++.+|.. ++.+++|++|++++|. ++.+|. .++.+++|++|++++|...+..|..+..+++|+.|++.++... 
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-  194 (272)
T 3rfs_A          117 VENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-  194 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-
T ss_pred             CCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC-
Confidence            88888866554 6778888888888876 455544 3577888888888887655444445677788888877655432 


Q ss_pred             hccccccCCCcccccccccCCCCCC
Q 013724          402 VETSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       402 ~~~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                       ...+.....++.++.+..+++.+.
T Consensus       195 -~~~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          195 -SVPDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             -CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             -ccCHHHHhCCcCCCEEEccCCCcc
Confidence             222233445666666666665544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.57  E-value=1.2e-14  Score=149.02  Aligned_cols=175  Identities=17%  Similarity=0.116  Sum_probs=89.1

Q ss_pred             hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEE
Q 013724          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM  321 (437)
Q Consensus       246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L  321 (437)
                      |+.|+|++|.... .+ +..+..+++|++|+|++|. +..+|...  .+++|+.|+|++|+.++.++.  +..+++|++|
T Consensus       125 L~~L~L~~n~l~~-~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  201 (452)
T 3zyi_A          125 LNTLELFDNWLTV-IP-SGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL  201 (452)
T ss_dssp             CCEEECCSSCCSB-CC-TTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred             CCEEECCCCcCCc-cC-hhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence            5555555554332 11 1234445666666666665 44444432  555666666665555554443  5555666666


Q ss_pred             EeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchh
Q 013724          322 FLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFF  401 (437)
Q Consensus       322 ~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~  401 (437)
                      +|++|.++.+| .+..+++|+.|+|++|...+..|..+.++++|+.|+|++|...+..|..+..+++|+.|++.++... 
T Consensus       202 ~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-  279 (452)
T 3zyi_A          202 NLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-  279 (452)
T ss_dssp             ECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-
T ss_pred             ECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-
Confidence            66666655554 3555556666666665533333455555566666666555544444555555555665555443221 


Q ss_pred             hccccccCCCcccccccccCCCCCC
Q 013724          402 VETSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       402 ~~~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                       .........+..++.+..+++.+.
T Consensus       280 -~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          280 -SLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             -CCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             -ccChHHhccccCCCEEEccCCCcC
Confidence             111222233444555555555444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.57  E-value=1.3e-14  Score=148.41  Aligned_cols=175  Identities=18%  Similarity=0.112  Sum_probs=90.9

Q ss_pred             hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEE
Q 013724          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM  321 (437)
Q Consensus       246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L  321 (437)
                      |+.|+|++|.... .+ +..+..+++|++|+|++|. +..+|...  .+++|+.|+|++|+.+..++.  +..+++|++|
T Consensus       114 L~~L~L~~n~l~~-~~-~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  190 (440)
T 3zyj_A          114 LNTLELFDNRLTT-IP-NGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL  190 (440)
T ss_dssp             CCEEECCSSCCSS-CC-TTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred             CCEEECCCCcCCe-eC-HhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence            5556666654332 11 1234456666666666665 44444422  556666666666555554443  5556666666


Q ss_pred             EeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchh
Q 013724          322 FLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFF  401 (437)
Q Consensus       322 ~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~  401 (437)
                      +|++|.|+.+|. +..+++|+.|+|++|...+..|..+..+++|+.|+|++|...+..|..+..+++|+.|++.++... 
T Consensus       191 ~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-  268 (440)
T 3zyj_A          191 NLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-  268 (440)
T ss_dssp             ECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-
T ss_pred             cCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-
Confidence            666666665552 555666666666666533333455556666666666655544444455555666666655443222 


Q ss_pred             hccccccCCCcccccccccCCCCCC
Q 013724          402 VETSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       402 ~~~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                       .........+..++.+..+++.+.
T Consensus       269 -~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          269 -LLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             -CCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             -ccChhHhccccCCCEEEcCCCCcc
Confidence             111222233445555555555444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.55  E-value=4.7e-14  Score=134.70  Aligned_cols=177  Identities=23%  Similarity=0.203  Sum_probs=137.8

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM  321 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L  321 (437)
                      .++.|++++|..... + +..+..+++|++|++++|. +..+|...  .+++|++|+|++|.+....+. +..+++|++|
T Consensus        38 ~l~~L~l~~n~l~~~-~-~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  114 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSL-P-SKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL  114 (270)
T ss_dssp             TCSEEECCSSCCSCC-C-TTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEE
T ss_pred             CCCEEECcCCCCCee-C-HHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEE
Confidence            467888888865432 2 2346779999999999998 66777765  799999999999876654444 7899999999


Q ss_pred             EeeCCCCcccCh-hhcCCCCCCEEeccCCCCCCCCccc-cCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724          322 FLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       322 ~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n~~l~~LP~~-l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~  399 (437)
                      +|++|.++.+|. .++.+++|++|+|++|. ++.+|.. +..+++|++|+|++|......+..+..+++|+.|++.++..
T Consensus       115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (270)
T 2o6q_A          115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL  193 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence            999999998765 57899999999999998 6677654 78999999999999875554445688999999999877643


Q ss_pred             hhhccccccCCCcccccccccCCCCCCc
Q 013724          400 FFVETSAASGDDWKSAFDAAADGPVKPS  427 (437)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~s~~~~~~  427 (437)
                      .  .........+..++.+..+++.+.+
T Consensus       194 ~--~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          194 K--RVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             S--CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             C--cCCHHHhccccCCCEEEecCCCeeC
Confidence            3  2222334556778888888777653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.55  E-value=4.7e-14  Score=137.63  Aligned_cols=125  Identities=20%  Similarity=0.298  Sum_probs=64.4

Q ss_pred             ccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEe
Q 013724          266 SQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLD  345 (437)
Q Consensus       266 ~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~  345 (437)
                      +..+++|++|++++|. +..++....+++|+.|+|++|.+ ..++.+..+++|+.|+|++|.++.++. ++.+++|+.|+
T Consensus        81 ~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~  157 (308)
T 1h6u_A           81 LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQI-TDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLS  157 (308)
T ss_dssp             GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSCC-CCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEE
T ss_pred             HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCCCC-CCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEE
Confidence            3445555555555555 44444222555555555555543 223445555555555555555555543 55555555555


Q ss_pred             ccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724          346 LEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV  397 (437)
Q Consensus       346 L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~  397 (437)
                      +++|. +..++. +..+++|+.|++++|.. ..++. +..+++|+.|++.+|
T Consensus       158 l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          158 IGNAQ-VSDLTP-LANLSKLTTLKADDNKI-SDISP-LASLPNLIEVHLKNN  205 (308)
T ss_dssp             CCSSC-CCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECTTS
T ss_pred             ccCCc-CCCChh-hcCCCCCCEEECCCCcc-CcChh-hcCCCCCCEEEccCC
Confidence            55554 444444 55555566666655443 33332 455555555555444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.55  E-value=4.6e-14  Score=144.79  Aligned_cols=175  Identities=19%  Similarity=0.153  Sum_probs=111.0

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCcc-C-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM  321 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~-~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L  321 (437)
                      .|+.|+|++|......  +..+..+++|++|+|++|. +..+|.. + .+++|++|+|++|.+....+. +..+++|+.|
T Consensus       100 ~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  176 (452)
T 3zyi_A          100 HLEVLQLGRNSIRQIE--VGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL  176 (452)
T ss_dssp             TCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCEEECCCCccCCcC--hhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE
Confidence            4555666665443221  1234456667777777766 4455544 3 566777777776654432222 6667777777


Q ss_pred             EeeC-CCCcccCh-hhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724          322 FLNG-TAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       322 ~Ls~-n~l~~lp~-~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~  399 (437)
                      +|++ +.+..++. .+..+++|+.|+|++|. +..+|. +..+++|+.|+|++|...+..|..+..+++|+.|++.++..
T Consensus       177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l  254 (452)
T 3zyi_A          177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV  254 (452)
T ss_dssp             ECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred             eCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence            7766 45555554 46677777777777776 566653 67778888888888776666677888888888888765543


Q ss_pred             hhhccccccCCCcccccccccCCCCCC
Q 013724          400 FFVETSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                      .  ...+.....+..++.+..+++.+.
T Consensus       255 ~--~~~~~~~~~l~~L~~L~L~~N~l~  279 (452)
T 3zyi_A          255 S--LIERNAFDGLASLVELNLAHNNLS  279 (452)
T ss_dssp             C--EECTTTTTTCTTCCEEECCSSCCS
T ss_pred             c--eECHHHhcCCCCCCEEECCCCcCC
Confidence            3  222334455677777777777665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.55  E-value=4.3e-14  Score=136.85  Aligned_cols=147  Identities=24%  Similarity=0.265  Sum_probs=115.4

Q ss_pred             HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724          244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM  321 (437)
Q Consensus       244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L  321 (437)
                      ..|+.|++++|.......    ...+++|+.|++++|. +..+|..+ .+++|++|+|++|.+....|. |..+++|++|
T Consensus        55 ~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L  129 (290)
T 1p9a_G           55 TRLTQLNLDRAELTKLQV----DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL  129 (290)
T ss_dssp             TTCCEEECTTSCCCEEEC----CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred             CCCCEEECCCCccCcccC----CCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEE
Confidence            356778888776543221    2567889999999987 67888777 888999999999876655545 8889999999


Q ss_pred             EeeCCCCcccChh-hcCCCCCCEEeccCCCCCCCCccc-cCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724          322 FLNGTAIEELPSS-IECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV  397 (437)
Q Consensus       322 ~Ls~n~l~~lp~~-i~~L~~L~~L~L~~n~~l~~LP~~-l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~  397 (437)
                      +|++|.|+.+|.. +..+++|+.|+|++|+ ++.+|.. +..+++|++|+|++|. +..+|..+..+.+|+.|++.++
T Consensus       130 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          130 YLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSC
T ss_pred             ECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCC
Confidence            9999999988764 5788999999999988 6777765 5778999999998865 5588888888888988887643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.54  E-value=2.7e-14  Score=129.99  Aligned_cols=148  Identities=15%  Similarity=0.093  Sum_probs=122.1

Q ss_pred             HHhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724          243 RNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEM  321 (437)
Q Consensus       243 ~~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L  321 (437)
                      ...|+.|++++|... ..+   .+..+++|++|++++|. +..++....+++|++|+|++|.+....|. +..+++|++|
T Consensus        43 l~~L~~L~l~~n~i~-~l~---~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT---GIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT---TGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             cCCccEEeccCCCcc-ChH---HHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            346788999887654 222   36778999999999996 66665333999999999999987664454 9999999999


Q ss_pred             EeeCCCCc-ccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccccc
Q 013724          322 FLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVY  398 (437)
Q Consensus       322 ~Ls~n~l~-~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~  398 (437)
                      +|++|.++ ..|..++.+++|+.|++++|..++.+| .+..+++|++|++++|.. ..++ .+..+++|+.|++.+..
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCT-TGGGCSSCCEEEECBC-
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChH-HhccCCCCCEEEeeCcc
Confidence            99999999 478889999999999999998788887 689999999999999874 5566 78899999999975543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.54  E-value=7.7e-14  Score=130.25  Aligned_cols=125  Identities=25%  Similarity=0.247  Sum_probs=93.9

Q ss_pred             CceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCC-C-CCCCCCCCEEEeeCCCCcccChh-hcCCCCCCEEe
Q 013724          270 NTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHLD  345 (437)
Q Consensus       270 ~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp-~-l~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~  345 (437)
                      ++|++|+|++|.+.+..|..+ .+++|++|+|++|.+ ..+| . +..+++|+.|+|++|.|+.+|.. +..+++|+.|+
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence            678888888888444335555 788888888888765 4444 3 67888888888888888877654 57788888888


Q ss_pred             ccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccc-hhccCCCCCceeecccc
Q 013724          346 LEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLN-FDIWSILPLVLTTFIYV  397 (437)
Q Consensus       346 L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP-~~l~~L~~L~~L~~~~~  397 (437)
                      |++|. +..+|..+..+++|++|+|++|... .+| ..+..+++|+.|++.++
T Consensus       119 Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          119 MCCNK-LTELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             CCSSC-CCSCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTS
T ss_pred             ccCCc-ccccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCC
Confidence            88887 6688888888888888888887544 444 45778888888887543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.54  E-value=2.9e-14  Score=126.15  Aligned_cols=128  Identities=24%  Similarity=0.231  Sum_probs=106.0

Q ss_pred             cCceEEEeccCCCCC-CCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcc-cChhhcCCCCCCEEe
Q 013724          269 LNTLVVLNLRDCKSL-KSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEE-LPSSIECLYKLLHLD  345 (437)
Q Consensus       269 l~~L~~L~Ls~n~~l-~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~-lp~~i~~L~~L~~L~  345 (437)
                      .++|+.|++++|.+. +.+|..+ .+++|++|+|++|.+.. ++.+..+++|++|+|++|.+.. +|..+..+++|++|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-CSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-hhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            367899999999843 3788877 88999999999987554 4668899999999999999996 777777899999999


Q ss_pred             ccCCCCCCCCc--cccCCCCCCCEEeeeCCCCCCccch----hccCCCCCceeecccccc
Q 013724          346 LEDCKSLKSLP--SGLCKLKSLKYLTLNGCSILQRLNF----DIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       346 L~~n~~l~~LP--~~l~~L~~L~~L~Ls~c~~l~~lP~----~l~~L~~L~~L~~~~~~~  399 (437)
                      |++|. ++.+|  ..+..+++|++|++++|+.. .+|.    .+..+++|+.|++.+|..
T Consensus       102 Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          102 LSGNK-LKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             CBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             ccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCCh
Confidence            99997 77776  67899999999999998754 4554    788999999998866654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.54  E-value=1.5e-13  Score=129.69  Aligned_cols=155  Identities=19%  Similarity=0.092  Sum_probs=124.2

Q ss_pred             CceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEEec
Q 013724          270 NTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDL  346 (437)
Q Consensus       270 ~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L  346 (437)
                      ++|+.|+|++|.+.+..+..+ .+++|++|+|++|.+....|. +..+++|++|+|++|.|+.+|. .+..+++|+.|+|
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            689999999999444344445 899999999999987776665 8999999999999999998875 5789999999999


Q ss_pred             cCCCCCCCCccc-cCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCcccccccccCCCCC
Q 013724          347 EDCKSLKSLPSG-LCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVK  425 (437)
Q Consensus       347 ~~n~~l~~LP~~-l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~  425 (437)
                      ++|. ++.+|.. +..+++|++|+|++|...+-.+..+..+++|+.|++.++...  ...+.....++.++.+..+++.+
T Consensus       115 ~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          115 GGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ--SVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             CSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCTTCCEEECCSCCB
T ss_pred             CCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC--ccCHHHHhCCCCCCEEEeeCCce
Confidence            9998 6677655 689999999999998655444447899999999998766433  23333455677888888888877


Q ss_pred             Cc
Q 013724          426 PS  427 (437)
Q Consensus       426 ~~  427 (437)
                      .+
T Consensus       192 ~c  193 (251)
T 3m19_A          192 DC  193 (251)
T ss_dssp             CT
T ss_pred             eC
Confidence            64

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.53  E-value=7e-14  Score=142.90  Aligned_cols=175  Identities=21%  Similarity=0.173  Sum_probs=107.6

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCcc-C-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM  321 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~-~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L  321 (437)
                      .|+.|+|++|......  +..+..+++|+.|+|++|. +..+|.. + .+++|++|+|++|.+....+. +..+++|+.|
T Consensus        89 ~L~~L~Ls~n~i~~i~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  165 (440)
T 3zyj_A           89 HLEILQLSRNHIRTIE--IGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL  165 (440)
T ss_dssp             SCCEEECCSSCCCEEC--GGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCEEECCCCcCCccC--hhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe
Confidence            3555666665433211  1234456666777776665 4455543 3 666677777776654433332 6666777777


Q ss_pred             EeeC-CCCcccCh-hhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724          322 FLNG-TAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       322 ~Ls~-n~l~~lp~-~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~  399 (437)
                      +|++ +.+..++. .+..+++|+.|+|++|. +..+|. +..+++|+.|+|++|...+..|..+..+++|+.|++.++..
T Consensus       166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l  243 (440)
T 3zyj_A          166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI  243 (440)
T ss_dssp             ECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             CCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCce
Confidence            7766 44555554 46677777777777776 666664 67777788888877766555577778888888887755433


Q ss_pred             hhhccccccCCCcccccccccCCCCCC
Q 013724          400 FFVETSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                      .  ...+.....++.++.+..+++.+.
T Consensus       244 ~--~~~~~~~~~l~~L~~L~L~~N~l~  268 (440)
T 3zyj_A          244 Q--VIERNAFDNLQSLVEINLAHNNLT  268 (440)
T ss_dssp             C--EECTTSSTTCTTCCEEECTTSCCC
T ss_pred             e--EEChhhhcCCCCCCEEECCCCCCC
Confidence            2  222334455677777777777665

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.53  E-value=5.6e-14  Score=141.08  Aligned_cols=37  Identities=19%  Similarity=0.279  Sum_probs=17.9

Q ss_pred             cccCceEEEeccCCCCCCCcC-ccC-CCCCccEEeeeCCC
Q 013724          267 QHLNTLVVLNLRDCKSLKSLP-AGI-HLEFLKELDLSGCS  304 (437)
Q Consensus       267 ~~l~~L~~L~Ls~n~~l~~lp-~~~-~l~~L~~L~Ls~n~  304 (437)
                      ..+++|++|++++|. +..++ ..+ .+++|+.|+|++|.
T Consensus       138 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~  176 (390)
T 3o6n_A          138 HNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR  176 (390)
T ss_dssp             TTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSC
T ss_pred             cCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCc
Confidence            345555555555555 22332 223 45555555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.53  E-value=4.2e-14  Score=150.31  Aligned_cols=38  Identities=16%  Similarity=0.142  Sum_probs=18.1

Q ss_pred             cccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCC
Q 013724          267 QHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCS  304 (437)
Q Consensus       267 ~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~  304 (437)
                      ..+++|++|+|++|.+.+..|..+ .+++|+.|+|++|.
T Consensus       144 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  182 (597)
T 3oja_B          144 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR  182 (597)
T ss_dssp             TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred             ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence            445555555555555222222233 55555555555544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.53  E-value=2.1e-14  Score=139.24  Aligned_cols=129  Identities=22%  Similarity=0.309  Sum_probs=60.2

Q ss_pred             ccCceEEEeccCCCCCCCcCc--cC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcc--cChhhcCCCCC
Q 013724          268 HLNTLVVLNLRDCKSLKSLPA--GI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEE--LPSSIECLYKL  341 (437)
Q Consensus       268 ~l~~L~~L~Ls~n~~l~~lp~--~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~--lp~~i~~L~~L  341 (437)
                      .+++|++|++++|. +..++.  .+ .+++|++|+|++|.+....|. +..+++|++|+|++|.+..  +|..+..+++|
T Consensus        99 ~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  177 (306)
T 2z66_A           99 GLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  177 (306)
T ss_dssp             TCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             CCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence            44555555555554 333332  22 445555555555544333333 4445555555555555542  44445555555


Q ss_pred             CEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724          342 LHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV  397 (437)
Q Consensus       342 ~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~  397 (437)
                      +.|+|++|...+..|..+..+++|++|++++|...+..+..+..+++|+.|++.++
T Consensus       178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN  233 (306)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred             CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence            55555555422222444455555555555554433323334444555555554433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.52  E-value=2.4e-14  Score=151.71  Aligned_cols=177  Identities=15%  Similarity=0.089  Sum_probs=119.2

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcC-ccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLP-AGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM  321 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp-~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L  321 (437)
                      .|+.|++++|..... +  ..+..+++|+.|++++|.+.+..| ..+ .+++|+.|+|++|.+....|. +..+++|++|
T Consensus       377 ~L~~L~L~~n~l~~~-~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  453 (606)
T 3vq2_A          377 SLRHLDLSFNGAIIM-S--ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL  453 (606)
T ss_dssp             CCCEEECCSCSEEEE-C--CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred             cccEeECCCCccccc-h--hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence            456666666654321 1  345567778888888877444444 234 778888888888776666665 7778888888


Q ss_pred             EeeCCCCcc--cChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724          322 FLNGTAIEE--LPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       322 ~Ls~n~l~~--lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~  399 (437)
                      +|++|.+..  +|..++.+++|+.|+|++|...+..|..+..+++|++|++++|...+..|..+..+++|+.|++.+|..
T Consensus       454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l  533 (606)
T 3vq2_A          454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI  533 (606)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred             ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence            888887774  577778888888888888875555566677888888888888777666677788888888888766643


Q ss_pred             hhhccccccCCCcc-cccccccCCCCCCc
Q 013724          400 FFVETSAASGDDWK-SAFDAAADGPVKPS  427 (437)
Q Consensus       400 ~~~~~~~~~~~~~~-~l~~~~~s~~~~~~  427 (437)
                      .   ..+.....+. .++.+..+++.+.+
T Consensus       534 ~---~~p~~~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          534 E---TSKGILQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             C---CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred             c---ccCHhHhhhcccCcEEEccCCCccc
Confidence            2   2333333343 35666666665553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.52  E-value=3e-14  Score=136.18  Aligned_cols=176  Identities=20%  Similarity=0.128  Sum_probs=87.7

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcC-ccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLP-AGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM  321 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp-~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L  321 (437)
                      .|+.|++++|......  +..+..+++|++|++++|. +..++ ..+ .+++|++|++++|.+....+. +..+++|++|
T Consensus        53 ~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  129 (276)
T 2z62_A           53 ELQVLDLSRCEIQTIE--DGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL  129 (276)
T ss_dssp             TCSEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred             CCcEEECCCCcCCccC--HHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEE
Confidence            3455555555332211  1123445556666666555 33333 233 555666666655544433332 5555666666


Q ss_pred             EeeCCCCcc--cChhhcCCCCCCEEeccCCCCCCCC-ccccCCCCCCC----EEeeeCCCCCCccchhccCCCCCceeec
Q 013724          322 FLNGTAIEE--LPSSIECLYKLLHLDLEDCKSLKSL-PSGLCKLKSLK----YLTLNGCSILQRLNFDIWSILPLVLTTF  394 (437)
Q Consensus       322 ~Ls~n~l~~--lp~~i~~L~~L~~L~L~~n~~l~~L-P~~l~~L~~L~----~L~Ls~c~~l~~lP~~l~~L~~L~~L~~  394 (437)
                      +|++|.+..  +|..++.+++|+.|++++|. ++.+ +..+..+++|+    .|++++|. +..+|.......+|+.|++
T Consensus       130 ~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L  207 (276)
T 2z62_A          130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELAL  207 (276)
T ss_dssp             ECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEECCSSC-CCEECTTSSCSCCEEEEEC
T ss_pred             ECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeecCCCc-ccccCccccCCCcccEEEC
Confidence            666665553  45555556666666666655 3332 23333333333    55555544 2334434334446666666


Q ss_pred             ccccchhhccccccCCCcccccccccCCCCCCc
Q 013724          395 IYVYKFFVETSAASGDDWKSAFDAAADGPVKPS  427 (437)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~  427 (437)
                      .++...  .........++.++.+..+++.+.+
T Consensus       208 ~~n~l~--~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          208 DTNQLK--SVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CSSCCS--CCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             CCCcee--ecCHhHhcccccccEEEccCCcccc
Confidence            544322  2222233456677777777776663

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.52  E-value=4.3e-14  Score=132.31  Aligned_cols=147  Identities=12%  Similarity=0.116  Sum_probs=76.4

Q ss_pred             hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCcc-C-CCCCccEEeeeC-CCCCCCCC-C-CCCCCCCCE
Q 013724          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSG-CSKLKRLP-D-ISSAANIEE  320 (437)
Q Consensus       246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~-~-~l~~L~~L~Ls~-n~~~~~lp-~-l~~l~~L~~  320 (437)
                      ++.|++++|......+  ..+..+++|+.|++++|..++.++.. + .+++|++|+|++ |. +..+| . +..+++|++
T Consensus        33 l~~L~l~~n~l~~i~~--~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           33 TQTLKLIETHLRTIPS--HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKF  109 (239)
T ss_dssp             CCEEEEESCCCSEECT--TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEECCTTCCE
T ss_pred             ccEEEEeCCcceEECH--HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCE
Confidence            4455555554332211  12344566666666666434445442 2 566666666665 33 33333 2 555666666


Q ss_pred             EEeeCCCCcccChhhcCCCCCC---EEeccCCCCCCCCcc-ccCCCCCCC-EEeeeCCCCCCccchhccCCCCCceeecc
Q 013724          321 MFLNGTAIEELPSSIECLYKLL---HLDLEDCKSLKSLPS-GLCKLKSLK-YLTLNGCSILQRLNFDIWSILPLVLTTFI  395 (437)
Q Consensus       321 L~Ls~n~l~~lp~~i~~L~~L~---~L~L~~n~~l~~LP~-~l~~L~~L~-~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~  395 (437)
                      |+|++|.++.+|. +..+++|+   .|++++|..++.+|. .+..+++|+ +|++++|.. ..+|.......+|+.|++.
T Consensus       110 L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l-~~i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          110 LGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             EEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC-CEECTTTTTTCEEEEEECT
T ss_pred             EeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC-cccCHhhcCCCCCCEEEcC
Confidence            6666666666554 55555555   666666622455543 255566666 666665543 3555443333556666554


Q ss_pred             cc
Q 013724          396 YV  397 (437)
Q Consensus       396 ~~  397 (437)
                      ++
T Consensus       188 ~n  189 (239)
T 2xwt_C          188 KN  189 (239)
T ss_dssp             TC
T ss_pred             CC
Confidence            44

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.52  E-value=1.2e-13  Score=128.96  Aligned_cols=133  Identities=27%  Similarity=0.321  Sum_probs=111.5

Q ss_pred             HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCE
Q 013724          244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEE  320 (437)
Q Consensus       244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~  320 (437)
                      ..|+.|+|++|...+..+  ..+..+++|++|+|++|. ++.+|...  .+++|++|+|++|.+....+. +..+++|+.
T Consensus        40 ~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  116 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEP--GVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE  116 (229)
T ss_dssp             TTCSEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEEcCCCccCccCH--HHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCe
Confidence            357889999887654332  456779999999999998 67787654  899999999999976655455 789999999


Q ss_pred             EEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCc-cccCCCCCCCEEeeeCCCCCCccc
Q 013724          321 MFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLP-SGLCKLKSLKYLTLNGCSILQRLN  380 (437)
Q Consensus       321 L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP  380 (437)
                      |+|++|.|+.+|..+..+++|+.|+|++|. +..+| ..+..+++|+.|+|++|+.....+
T Consensus       117 L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          117 LFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             EECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             EeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            999999999999999999999999999998 66776 458899999999999998765443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.52  E-value=6.3e-14  Score=150.18  Aligned_cols=174  Identities=13%  Similarity=0.062  Sum_probs=128.3

Q ss_pred             hhhhhhcccCcccCCCCCCcccc-------ccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC--CC
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQ-------HLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--IS  313 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~-------~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~--l~  313 (437)
                      .|+.|++++|...+..+.  .+.       .+++|+.|++++|. +..+|..+  .+++|+.|+|++|.+. .+|.  +.
T Consensus       403 ~L~~L~Ls~N~l~~~~p~--~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~  478 (636)
T 4eco_A          403 VMSAIDFSYNEIGSVDGK--NFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLK  478 (636)
T ss_dssp             CEEEEECCSSCTTTTTTC--SSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSE
T ss_pred             ccCEEECcCCcCCCcchh--hhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhc
Confidence            355666666655443321  122       45688888888887 55777766  6889999999988766 6665  32


Q ss_pred             CC-------CCCCEEEeeCCCCcccChhhc--CCCCCCEEeccCCCCCCCCccccCCCCCCCEEeee------CCCCCCc
Q 013724          314 SA-------ANIEEMFLNGTAIEELPSSIE--CLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLN------GCSILQR  378 (437)
Q Consensus       314 ~l-------~~L~~L~Ls~n~l~~lp~~i~--~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls------~c~~l~~  378 (437)
                      .+       ++|+.|+|++|.|+.+|..+.  .+++|+.|+|++|. +..+|..+..+++|++|+|+      +|...+.
T Consensus       479 ~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~  557 (636)
T 4eco_A          479 DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLRE  557 (636)
T ss_dssp             ETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCC
T ss_pred             cccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCccccc
Confidence            22       289999999999999998887  89999999999988 55589888899999999994      5667788


Q ss_pred             cchhccCCCCCceeecccccchhhccccccCCCcccccccccCCCCCCcc
Q 013724          379 LNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKPSQ  428 (437)
Q Consensus       379 lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~~  428 (437)
                      +|..+..+++|+.|++.+|..   ...+....  +.++.+..+++.+.+.
T Consensus       558 ~p~~l~~l~~L~~L~Ls~N~l---~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          558 WPEGITLCPSLTQLQIGSNDI---RKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             CCTTGGGCSSCCEEECCSSCC---CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             ChHHHhcCCCCCEEECCCCcC---CccCHhHh--CcCCEEECcCCCCccc
Confidence            999999999999999877665   23333222  6777788777766543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.52  E-value=1.1e-13  Score=128.38  Aligned_cols=127  Identities=21%  Similarity=0.264  Sum_probs=102.9

Q ss_pred             CceEEEeccCCCCCCCcCc-cC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChh-hcCCCCCCEEe
Q 013724          270 NTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHLD  345 (437)
Q Consensus       270 ~~L~~L~Ls~n~~l~~lp~-~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~  345 (437)
                      ++|+.|++++|. +..++. .+ .+++|++|+|++|.+....|. |..+++|++|+|++|.|+.+|.. +..+++|+.|+
T Consensus        32 ~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence            578999999998 666665 44 889999999999877666565 88899999999999999988875 57899999999


Q ss_pred             ccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724          346 LEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV  397 (437)
Q Consensus       346 L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~  397 (437)
                      |++|...+..|..+..+++|++|+|++|...+-.+..+..+++|+.|++.++
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence            9999844444677889999999999998765555556888999999988654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.52  E-value=4.4e-14  Score=137.82  Aligned_cols=144  Identities=17%  Similarity=0.218  Sum_probs=97.3

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEee
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN  324 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls  324 (437)
                      .|+.|++++|.... .   ..+..+++|+.|++++|. +..++....+++|+.|+|++|.+. .++.+..+++|+.|+|+
T Consensus        86 ~L~~L~L~~n~l~~-~---~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~  159 (308)
T 1h6u_A           86 KITELELSGNPLKN-V---SAIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIG  159 (308)
T ss_dssp             SCCEEECCSCCCSC-C---GGGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECCSSCCC-CCGGGGGCTTCCEEECC
T ss_pred             CCCEEEccCCcCCC-c---hhhcCCCCCCEEECCCCC-CCCchhhcCCCCCCEEECCCCccC-cCccccCCCCccEEEcc
Confidence            46667777665432 1   135567778888888777 555655227777888888877543 44447777778888888


Q ss_pred             CCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724          325 GTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       325 ~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~  399 (437)
                      +|.++.++. +..+++|+.|++++|. +..+|. +..+++|++|++++|.. ..++ .+..+++|+.|++.++..
T Consensus       160 ~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~N~l-~~~~-~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          160 NAQVSDLTP-LANLSKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNNQI-SDVS-PLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             SSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECTTSCC-CBCG-GGTTCTTCCEEEEEEEEE
T ss_pred             CCcCCCChh-hcCCCCCCEEECCCCc-cCcChh-hcCCCCCCEEEccCCcc-Cccc-cccCCCCCCEEEccCCee
Confidence            887777766 7777788888887777 556654 67777788888877654 3444 367777777777765543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.52  E-value=1.2e-14  Score=140.95  Aligned_cols=179  Identities=16%  Similarity=0.059  Sum_probs=133.4

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCC--CCCCCCCCCEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLP--DISSAANIEEM  321 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp--~l~~l~~L~~L  321 (437)
                      .|+.|++++|........+..+..+++|++|++++|. +..+|..+ .+++|++|+|++|.+....+  .+..+++|++|
T Consensus        53 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  131 (306)
T 2z66_A           53 QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  131 (306)
T ss_dssp             TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEE
T ss_pred             cCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEE
Confidence            4777888877553221111223457889999999998 66777777 89999999999987655443  38889999999


Q ss_pred             EeeCCCCcc-cChhhcCCCCCCEEeccCCCCCC-CCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724          322 FLNGTAIEE-LPSSIECLYKLLHLDLEDCKSLK-SLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       322 ~Ls~n~l~~-lp~~i~~L~~L~~L~L~~n~~l~-~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~  399 (437)
                      ++++|.+.. .|..+..+++|+.|++++|...+ .+|..+..+++|++|++++|...+..|..+..+++|+.|++.++..
T Consensus       132 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  211 (306)
T 2z66_A          132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF  211 (306)
T ss_dssp             ECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             ECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc
Confidence            999999984 45678899999999999998444 4788899999999999999887666688899999999999877653


Q ss_pred             hhhccccccCCCcccccccccCCCCCC
Q 013724          400 FFVETSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                      ..  ........++.++.+..+++.+.
T Consensus       212 ~~--~~~~~~~~l~~L~~L~L~~N~l~  236 (306)
T 2z66_A          212 FS--LDTFPYKCLNSLQVLDYSLNHIM  236 (306)
T ss_dssp             SB--CCSGGGTTCTTCCEEECTTSCCC
T ss_pred             Cc--cChhhccCcccCCEeECCCCCCc
Confidence            32  11222334556666666665554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.52  E-value=2.4e-14  Score=124.12  Aligned_cols=125  Identities=21%  Similarity=0.179  Sum_probs=105.4

Q ss_pred             cCceEEEeccCCCCC-CCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcc-cChhhcCCCCCCEEe
Q 013724          269 LNTLVVLNLRDCKSL-KSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEE-LPSSIECLYKLLHLD  345 (437)
Q Consensus       269 l~~L~~L~Ls~n~~l-~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~-lp~~i~~L~~L~~L~  345 (437)
                      .++|+.|++++|.+. +.+|..+ .+++|+.|++++|.+... +.+..+++|++|+|++|.++. +|..++.+++|+.|+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            478999999999844 4888877 899999999999875544 669999999999999999997 788888899999999


Q ss_pred             ccCCCCCCCCc--cccCCCCCCCEEeeeCCCCCCccc---hhccCCCCCceeecc
Q 013724          346 LEDCKSLKSLP--SGLCKLKSLKYLTLNGCSILQRLN---FDIWSILPLVLTTFI  395 (437)
Q Consensus       346 L~~n~~l~~LP--~~l~~L~~L~~L~Ls~c~~l~~lP---~~l~~L~~L~~L~~~  395 (437)
                      +++|. ++.+|  ..++.+++|++|++++|+..+..+   ..+..+++|+.|++.
T Consensus        95 ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            99998 66665  788999999999999987544333   368889999998864

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.51  E-value=4e-14  Score=138.15  Aligned_cols=175  Identities=15%  Similarity=0.051  Sum_probs=111.6

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CC-----CCccEEeeeCCCCCCCCCC-CCCCCC
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HL-----EFLKELDLSGCSKLKRLPD-ISSAAN  317 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l-----~~L~~L~Ls~n~~~~~lp~-l~~l~~  317 (437)
                      .|+.|++++|...+..+...++..+++|++|++++|. +..+|..+ .+     ++|++|+|++|.+....|. +..+++
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  174 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA  174 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred             CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence            5677778877665544443233677888888888887 44446554 43     7888888888776655544 777888


Q ss_pred             CCEEEeeCCCCcc---cChhh--cCCCCCCEEeccCCCCCCCCc---cc-cCCCCCCCEEeeeCCCCCCccc-hhccCCC
Q 013724          318 IEEMFLNGTAIEE---LPSSI--ECLYKLLHLDLEDCKSLKSLP---SG-LCKLKSLKYLTLNGCSILQRLN-FDIWSIL  387 (437)
Q Consensus       318 L~~L~Ls~n~l~~---lp~~i--~~L~~L~~L~L~~n~~l~~LP---~~-l~~L~~L~~L~Ls~c~~l~~lP-~~l~~L~  387 (437)
                      |++|+|++|.+..   +|..+  +.+++|+.|+|++|. ++.+|   .. +..+++|++|++++|...+..| ..+..++
T Consensus       175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~  253 (312)
T 1wwl_A          175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS  253 (312)
T ss_dssp             CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred             CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence            8888888887652   34444  677888888888777 55333   22 3566778888887776655554 3455677


Q ss_pred             CCceeecccccchhhccccccCCCcccccccccCCCCCC
Q 013724          388 PLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       388 ~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                      +|+.|++.++...   ..+....  ..++.+..+++.+.
T Consensus       254 ~L~~L~Ls~N~l~---~ip~~~~--~~L~~L~Ls~N~l~  287 (312)
T 1wwl_A          254 QLNSLNLSFTGLK---QVPKGLP--AKLSVLDLSYNRLD  287 (312)
T ss_dssp             TCCEEECTTSCCS---SCCSSCC--SEEEEEECCSSCCC
T ss_pred             CCCEEECCCCccC---hhhhhcc--CCceEEECCCCCCC
Confidence            7777777655433   2222222  45566666655554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.51  E-value=1.3e-14  Score=155.55  Aligned_cols=154  Identities=15%  Similarity=0.106  Sum_probs=87.1

Q ss_pred             ccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCC-CCC-CCCC-CCCC------CCCCEEEeeCCCCcccCh--hh
Q 013724          268 HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCS-KLK-RLPD-ISSA------ANIEEMFLNGTAIEELPS--SI  335 (437)
Q Consensus       268 ~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~-~~~-~lp~-l~~l------~~L~~L~Ls~n~l~~lp~--~i  335 (437)
                      .+++|++|++++|.+.+.+|..+ .+++|++|+|++|. +.+ .+|. ++.+      ++|+.|+|++|.++.+|.  .+
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l  326 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL  326 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh
Confidence            56666666666666556666555 56666666666665 443 4554 4443      566666666666666665  56


Q ss_pred             cCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCC-CceeecccccchhhccccccCCC--c
Q 013724          336 ECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILP-LVLTTFIYVYKFFVETSAASGDD--W  412 (437)
Q Consensus       336 ~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~-L~~L~~~~~~~~~~~~~~~~~~~--~  412 (437)
                      +.+++|+.|++++|...+.+| .++.+++|++|++++|... .+|..+..+++ |+.|++.++...   ..+.....  .
T Consensus       327 ~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~---~lp~~~~~~~l  401 (636)
T 4eco_A          327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK---YIPNIFDAKSV  401 (636)
T ss_dssp             TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS---SCCSCCCTTCS
T ss_pred             ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc---ccchhhhhccc
Confidence            666666666666666444666 5566666666666665433 66666666666 666665544422   22222222  2


Q ss_pred             ccccccccCCCCCC
Q 013724          413 KSAFDAAADGPVKP  426 (437)
Q Consensus       413 ~~l~~~~~s~~~~~  426 (437)
                      ..++.+..+.+.+.
T Consensus       402 ~~L~~L~Ls~N~l~  415 (636)
T 4eco_A          402 SVMSAIDFSYNEIG  415 (636)
T ss_dssp             SCEEEEECCSSCTT
T ss_pred             CccCEEECcCCcCC
Confidence            24555555555443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.50  E-value=9.4e-14  Score=134.47  Aligned_cols=122  Identities=24%  Similarity=0.311  Sum_probs=53.6

Q ss_pred             ccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEecc
Q 013724          268 HLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLE  347 (437)
Q Consensus       268 ~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~  347 (437)
                      .+++|+.|++++|. +..+|....+++|++|+|++|.+ ..++.+..+++|+.|+|++|.++.+ +.+..+++|+.|+++
T Consensus        88 ~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~i-~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~  164 (291)
T 1h6t_A           88 NLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLE  164 (291)
T ss_dssp             TCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSCC-CCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECC
T ss_pred             cCCCCCEEECCCCc-CCCChhhccCCCCCEEECCCCcC-CCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEcc
Confidence            34444444444444 33333311444444444444432 2233344444444444444444444 334444555555555


Q ss_pred             CCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccc
Q 013724          348 DCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIY  396 (437)
Q Consensus       348 ~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~  396 (437)
                      +|. +..++. +..+++|+.|++++|. +..+|. +..+++|+.|++.+
T Consensus       165 ~N~-l~~~~~-l~~l~~L~~L~L~~N~-i~~l~~-l~~l~~L~~L~l~~  209 (291)
T 1h6t_A          165 DNQ-ISDIVP-LAGLTKLQNLYLSKNH-ISDLRA-LAGLKNLDVLELFS  209 (291)
T ss_dssp             SSC-CCCCGG-GTTCTTCCEEECCSSC-CCBCGG-GTTCTTCSEEEEEE
T ss_pred             CCc-cccchh-hcCCCccCEEECCCCc-CCCChh-hccCCCCCEEECcC
Confidence            444 333333 4445555555554443 233332 44445555554433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.50  E-value=1.7e-13  Score=134.37  Aligned_cols=127  Identities=17%  Similarity=0.196  Sum_probs=55.4

Q ss_pred             cccCceEEEeccCCCCCC--CcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCccc-ChhhcCCCCC
Q 013724          267 QHLNTLVVLNLRDCKSLK--SLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEEL-PSSIECLYKL  341 (437)
Q Consensus       267 ~~l~~L~~L~Ls~n~~l~--~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~l-p~~i~~L~~L  341 (437)
                      ..+++|+.|++++|.+..  ..+..+ .+++|++|++++|.+. .+|. +.  ++|+.|+|++|.++.+ |..+..+++|
T Consensus       142 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L  218 (330)
T 1xku_A          142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL  218 (330)
T ss_dssp             TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC
T ss_pred             cCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC
Confidence            344455555555544211  122222 4455555555554322 2332 21  4455555555555433 3344445555


Q ss_pred             CEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724          342 LHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV  397 (437)
Q Consensus       342 ~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~  397 (437)
                      +.|+|++|...+..+..+..+++|++|++++|. +..+|..+..+++|+.|++.++
T Consensus       219 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N  273 (330)
T 1xku_A          219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNN  273 (330)
T ss_dssp             CEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSS
T ss_pred             CEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCC
Confidence            555555544222222234444555555555443 2344444445555555544433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.49  E-value=1.6e-13  Score=146.13  Aligned_cols=144  Identities=22%  Similarity=0.273  Sum_probs=89.5

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEee
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN  324 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls  324 (437)
                      .|+.|+|++|......+    +..+++|+.|+|++|. +..+|....+++|+.|+|++|.+. .++.+..+++|+.|+|+
T Consensus        66 ~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~-~l~~l~~l~~L~~L~Ls  139 (605)
T 1m9s_A           66 NVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLG  139 (605)
T ss_dssp             TCCEEECTTSCCCCCGG----GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEECTTSCCC-CCGGGGGCTTCSEEECC
T ss_pred             CCCEEEeeCCCCCCChh----hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEecCCCCC-CCccccCCCccCEEECC
Confidence            45566666665432211    4556677777777776 555553226677777777776533 34556667777777777


Q ss_pred             CCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724          325 GTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       325 ~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~  399 (437)
                      +|.|+.+ ..+..|++|+.|+|++|. +..++. +..+++|+.|+|++|.+ ..+| .+..|++|+.|++.+|..
T Consensus       140 ~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~i-~~l~-~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          140 NNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHI-SDLR-ALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             SSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC-CBCG-GGTTCTTCSEEECCSEEE
T ss_pred             CCccCCc-hhhcccCCCCEEECcCCc-CCCchh-hccCCCCCEEECcCCCC-CCCh-HHccCCCCCEEEccCCcC
Confidence            7777766 456677777777777776 444444 66777777777777643 3444 466777777777655543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.49  E-value=1.5e-13  Score=141.57  Aligned_cols=150  Identities=23%  Similarity=0.287  Sum_probs=98.4

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM  321 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L  321 (437)
                      .|+.|+|++|......  +..+..+++|++|+|++|. +..+|...  .+++|++|+|++|.+....|. +..+++|+.|
T Consensus        57 ~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  133 (477)
T 2id5_A           57 HLEELELNENIVSAVE--PGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL  133 (477)
T ss_dssp             TCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCEEECCCCccCEeC--hhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence            4666777666443322  2235567777777777776 55566543  677777777777766555554 6777777777


Q ss_pred             EeeCCCCccc-ChhhcCCCCCCEEeccCCCCCCCCc-cccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccccc
Q 013724          322 FLNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLP-SGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVY  398 (437)
Q Consensus       322 ~Ls~n~l~~l-p~~i~~L~~L~~L~L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~  398 (437)
                      +|++|.+..+ |..+..+++|+.|+|++|. ++.+| ..+.++++|+.|++++|...+..+..+..+.+|+.|++.+|.
T Consensus       134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~  211 (477)
T 2id5_A          134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP  211 (477)
T ss_dssp             EECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred             ECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence            7777777754 3466777777777777776 44554 346777777777777776555555567777777777776553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.49  E-value=2.2e-13  Score=139.12  Aligned_cols=133  Identities=17%  Similarity=0.022  Sum_probs=96.3

Q ss_pred             CCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCccc-ChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEee
Q 013724          293 EFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTL  370 (437)
Q Consensus       293 ~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~L  370 (437)
                      ++|+.|+|++|.+...+|. +..+++|+.|+|++|.+..+ |..++.+++|+.|+|++|...+..|..++.+++|++|+|
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            4566667776665555565 77888888888888888865 557888888888888888843444667788888888888


Q ss_pred             eCCCCCCccchhccCCCCCceeecccccchhhccccccCCCcccccccccCCCCCCc
Q 013724          371 NGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKPS  427 (437)
Q Consensus       371 s~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~  427 (437)
                      ++|...+..|..+..+++|+.|++.++...  .........++.++.+..+++.+.+
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLK--SVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCcccccChhhccccccccEEECCCCccc--cCCHhHhccCCcccEEEccCCCccc
Confidence            888776666788888888888888665432  2222234566777778777776663

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.49  E-value=1.2e-13  Score=140.94  Aligned_cols=180  Identities=19%  Similarity=0.094  Sum_probs=125.4

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-C--------------------------------
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-H--------------------------------  291 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~--------------------------------  291 (437)
                      .|+.|++++|...+..+ ..++..+++|++|++++|.+.+..|..+ .                                
T Consensus       130 ~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  208 (455)
T 3v47_A          130 SLEMLVLRDNNIKKIQP-ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP  208 (455)
T ss_dssp             TCCEEECCSSBCCSCCC-CGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT
T ss_pred             cCCEEECCCCccCccCc-ccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccc
Confidence            56777787776543322 2346678888888888887444434332 2                                


Q ss_pred             --CCCccEEeeeCCCCCCCCCC--------------------------------------CC--CCCCCCEEEeeCCCCc
Q 013724          292 --LEFLKELDLSGCSKLKRLPD--------------------------------------IS--SAANIEEMFLNGTAIE  329 (437)
Q Consensus       292 --l~~L~~L~Ls~n~~~~~lp~--------------------------------------l~--~l~~L~~L~Ls~n~l~  329 (437)
                        +++|+.|+|++|.+.+..|.                                      +.  ..++|+.|+|++|.+.
T Consensus       209 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  288 (455)
T 3v47_A          209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF  288 (455)
T ss_dssp             TTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC
T ss_pred             cccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccc
Confidence              24567777776654321110                                      11  1257888888888888


Q ss_pred             c-cChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhcccccc
Q 013724          330 E-LPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAAS  408 (437)
Q Consensus       330 ~-lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~  408 (437)
                      . +|..++.+++|+.|+|++|...+..|..+..+++|++|+|++|...+..|..+..+++|+.|++.++..  ....+..
T Consensus       289 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~  366 (455)
T 3v47_A          289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI--RALGDQS  366 (455)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCC--CEECTTT
T ss_pred             ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcc--cccChhh
Confidence            4 466789999999999999995555577889999999999999887666688899999999999877644  2333445


Q ss_pred             CCCcccccccccCCCCCCc
Q 013724          409 GDDWKSAFDAAADGPVKPS  427 (437)
Q Consensus       409 ~~~~~~l~~~~~s~~~~~~  427 (437)
                      ...++.++.+..+++.+..
T Consensus       367 ~~~l~~L~~L~L~~N~l~~  385 (455)
T 3v47_A          367 FLGLPNLKELALDTNQLKS  385 (455)
T ss_dssp             TTTCTTCCEEECCSSCCSC
T ss_pred             ccccccccEEECCCCcccc
Confidence            5667788888888877663

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.49  E-value=1.7e-14  Score=159.41  Aligned_cols=152  Identities=18%  Similarity=0.197  Sum_probs=122.8

Q ss_pred             hhhhhhcccCcccCC------C---------CCCcccc--ccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCC-C
Q 013724          245 ALKEKIISACNIFTK------T---------PNPSFSQ--HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCS-K  305 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~------~---------~~~~~~~--~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~-~  305 (437)
                      .|+.|+|++|...+.      .         ..|..++  .+++|+.|+|++|.+.+.+|..+ .+++|+.|+|++|. +
T Consensus       449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l  528 (876)
T 4ecn_A          449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI  528 (876)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred             CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence            567788888876651      0         0334444  89999999999998888999888 89999999999987 5


Q ss_pred             CC-CCCC-CC-------CCCCCCEEEeeCCCCcccCh--hhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCC
Q 013724          306 LK-RLPD-IS-------SAANIEEMFLNGTAIEELPS--SIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCS  374 (437)
Q Consensus       306 ~~-~lp~-l~-------~l~~L~~L~Ls~n~l~~lp~--~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~  374 (437)
                      .+ .+|. ++       .+++|+.|+|++|.++.+|.  .++++++|+.|+|++|. +..+| .++.+++|+.|+|++|.
T Consensus       529 sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N~  606 (876)
T 4ecn_A          529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQ  606 (876)
T ss_dssp             CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSSC
T ss_pred             ccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCCc
Confidence            54 5664 33       45599999999999999998  89999999999999988 55888 78899999999999887


Q ss_pred             CCCccchhccCCCC-Cceeecccccc
Q 013724          375 ILQRLNFDIWSILP-LVLTTFIYVYK  399 (437)
Q Consensus       375 ~l~~lP~~l~~L~~-L~~L~~~~~~~  399 (437)
                      .. .+|..+..+++ |+.|++.+|..
T Consensus       607 l~-~lp~~l~~l~~~L~~L~Ls~N~L  631 (876)
T 4ecn_A          607 IE-EIPEDFCAFTDQVEGLGFSHNKL  631 (876)
T ss_dssp             CS-CCCTTSCEECTTCCEEECCSSCC
T ss_pred             cc-cchHHHhhccccCCEEECcCCCC
Confidence            55 88988888888 99998877653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.49  E-value=1.1e-13  Score=132.18  Aligned_cols=126  Identities=25%  Similarity=0.277  Sum_probs=53.6

Q ss_pred             cccCceEEEeccCCCCCCCcCc-cC-CCCCccEEeeeCCCCCC-CCCC-CCCCCCCCEEEeeCCCCcccC-hhhcCCCCC
Q 013724          267 QHLNTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGCSKLK-RLPD-ISSAANIEEMFLNGTAIEELP-SSIECLYKL  341 (437)
Q Consensus       267 ~~l~~L~~L~Ls~n~~l~~lp~-~~-~l~~L~~L~Ls~n~~~~-~lp~-l~~l~~L~~L~Ls~n~l~~lp-~~i~~L~~L  341 (437)
                      ..+++|++|++++|. +..++. .+ .+++|++|+|++|.+.. .+|. +..+++|+.|+|++|.++.++ ..+..+.+|
T Consensus        97 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  175 (276)
T 2z62_A           97 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (276)
T ss_dssp             TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred             cCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence            334455555555544 222322 22 44455555555444332 1233 444455555555555544433 233333333


Q ss_pred             C----EEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccch-hccCCCCCceeecc
Q 013724          342 L----HLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNF-DIWSILPLVLTTFI  395 (437)
Q Consensus       342 ~----~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~-~l~~L~~L~~L~~~  395 (437)
                      +    .|++++|. +..+|..+....+|+.|++++|.. ..+|. .+..+++|+.|++.
T Consensus       176 ~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~  232 (276)
T 2z62_A          176 PLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQL-KSVPDGIFDRLTSLQKIWLH  232 (276)
T ss_dssp             TTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCSSCC-SCCCTTTTTTCCSCCEEECC
T ss_pred             cccceeeecCCCc-ccccCccccCCCcccEEECCCCce-eecCHhHhcccccccEEEcc
Confidence            3    44455444 333433333333455555554432 22332 23444455554443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.49  E-value=2.9e-14  Score=151.09  Aligned_cols=179  Identities=15%  Similarity=0.006  Sum_probs=135.6

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCC--CCCCCCCCCEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLP--DISSAANIEEM  321 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp--~l~~l~~L~~L  321 (437)
                      .|+.|++++|...+....+..+..+++|+.|++++|. +..+|..+ .+++|+.|+|++|.+.+..|  .+..+++|+.|
T Consensus       351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  429 (606)
T 3vq2_A          351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL  429 (606)
T ss_dssp             TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred             CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence            3555566655443322223345567888888888887 66677666 88899999999988777666  38889999999


Q ss_pred             EeeCCCCcc-cChhhcCCCCCCEEeccCCCCCC-CCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724          322 FLNGTAIEE-LPSSIECLYKLLHLDLEDCKSLK-SLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       322 ~Ls~n~l~~-lp~~i~~L~~L~~L~L~~n~~l~-~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~  399 (437)
                      ++++|.+.. +|..++.+++|+.|++++|...+ .+|..++.+++|++|++++|...+..|..+..+++|+.|++.+|..
T Consensus       430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  509 (606)
T 3vq2_A          430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL  509 (606)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence            999999884 57778899999999999998555 3788889999999999999988777788899999999999876643


Q ss_pred             hhhccccccCCCcccccccccCCCCCC
Q 013724          400 FFVETSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                      .  ...+.....++.++.+..+++.+.
T Consensus       510 ~--~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          510 L--FLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             S--CEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             C--CcCHHHccCCCcCCEEECCCCcCc
Confidence            3  333455566777888888877765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.48  E-value=2.9e-13  Score=125.56  Aligned_cols=127  Identities=17%  Similarity=0.178  Sum_probs=102.4

Q ss_pred             CceEEEeccCCCCCCCc-Ccc-C-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEE
Q 013724          270 NTLVVLNLRDCKSLKSL-PAG-I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHL  344 (437)
Q Consensus       270 ~~L~~L~Ls~n~~l~~l-p~~-~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L  344 (437)
                      ..++.|+|++|. +..+ |.. + .+++|++|+|++|.+....+. |..+++|++|+|++|.|+.++. .+..+++|+.|
T Consensus        32 ~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  110 (220)
T 2v70_A           32 QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL  110 (220)
T ss_dssp             TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred             CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence            456899999998 5555 433 3 889999999999876655554 8889999999999999997765 47889999999


Q ss_pred             eccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724          345 DLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV  397 (437)
Q Consensus       345 ~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~  397 (437)
                      +|++|...+..|..+..+++|++|+|++|...+..|..+..+++|+.|++.++
T Consensus       111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A          111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence            99999855555777889999999999998776666888899999999988654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.48  E-value=2.9e-13  Score=149.56  Aligned_cols=80  Identities=18%  Similarity=0.156  Sum_probs=39.9

Q ss_pred             CCCCCEEEeeCCCCcccChhhcC--------CCCCCEEeccCCCCCCCCccccC--CCCCCCEEeeeCCCCCCccchhcc
Q 013724          315 AANIEEMFLNGTAIEELPSSIEC--------LYKLLHLDLEDCKSLKSLPSGLC--KLKSLKYLTLNGCSILQRLNFDIW  384 (437)
Q Consensus       315 l~~L~~L~Ls~n~l~~lp~~i~~--------L~~L~~L~L~~n~~l~~LP~~l~--~L~~L~~L~Ls~c~~l~~lP~~l~  384 (437)
                      +++|+.|+|++|.|..+|..+..        |++|+.|+|++|. +..+|..+.  .+++|+.|+|++|...+ +|..+.
T Consensus       696 l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~  773 (876)
T 4ecn_A          696 GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL  773 (876)
T ss_dssp             TCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG
T ss_pred             CCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCCCCCCc-cchhhh
Confidence            44444444444444444443322        1255555555554 345555554  55555555555554333 555555


Q ss_pred             CCCCCceeeccc
Q 013724          385 SILPLVLTTFIY  396 (437)
Q Consensus       385 ~L~~L~~L~~~~  396 (437)
                      .+++|+.|++.+
T Consensus       774 ~L~~L~~L~Ls~  785 (876)
T 4ecn_A          774 NSSQLKAFGIRH  785 (876)
T ss_dssp             GCTTCCEEECCC
T ss_pred             cCCCCCEEECCC
Confidence            555555555544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.48  E-value=6.4e-13  Score=121.59  Aligned_cols=126  Identities=25%  Similarity=0.257  Sum_probs=77.5

Q ss_pred             CceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChh-hcCCCCCCEEe
Q 013724          270 NTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHLD  345 (437)
Q Consensus       270 ~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~  345 (437)
                      ++|++|++++|. +..++...  .+++|++|+|++|.+....+. +..+++|++|+|++|.|+.+|.. +..+++|+.|+
T Consensus        28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            466777777776 44455433  667777777777654433333 56677777777777777766543 46677777777


Q ss_pred             ccCCCCCCCCcc-ccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724          346 LEDCKSLKSLPS-GLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV  397 (437)
Q Consensus       346 L~~n~~l~~LP~-~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~  397 (437)
                      |++|. +..+|. .+..+++|++|++++|...+..+..+..+++|+.|++.++
T Consensus       107 L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          107 LNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             cCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence            77766 444443 3566777777777776544333333666777777766544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.48  E-value=2.7e-14  Score=149.80  Aligned_cols=157  Identities=17%  Similarity=0.081  Sum_probs=86.6

Q ss_pred             cccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCC--CCCCCCCCCEEEeeCCCCcc-cChhhcCCCCCC
Q 013724          267 QHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLP--DISSAANIEEMFLNGTAIEE-LPSSIECLYKLL  342 (437)
Q Consensus       267 ~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp--~l~~l~~L~~L~Ls~n~l~~-lp~~i~~L~~L~  342 (437)
                      ..+++|+.|++++|. +..+|..+ .+++|+.|++++|.+....|  .+..+++|++|+|++|.+.. .|..+..+++|+
T Consensus       370 ~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  448 (570)
T 2z63_A          370 FGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE  448 (570)
T ss_dssp             HTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred             cccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc
Confidence            345555555555555 33344334 55666666666655444433  25566666666666666653 344556666666


Q ss_pred             EEeccCCCCC-CCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCcccccccccC
Q 013724          343 HLDLEDCKSL-KSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAAD  421 (437)
Q Consensus       343 ~L~L~~n~~l-~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s  421 (437)
                      .|+|++|... +.+|..+..+++|++|++++|...+..|..+..+++|+.|++.+|...  ...+.....++.++.+..+
T Consensus       449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~  526 (570)
T 2z63_A          449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK--SVPDGIFDRLTSLQKIWLH  526 (570)
T ss_dssp             EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCTTCCEEECC
T ss_pred             EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC--CCCHHHhhcccCCcEEEec
Confidence            6666666633 345666666666666666666555545666666666666666544221  1222233445555566655


Q ss_pred             CCCCC
Q 013724          422 GPVKP  426 (437)
Q Consensus       422 ~~~~~  426 (437)
                      ++.+.
T Consensus       527 ~N~~~  531 (570)
T 2z63_A          527 TNPWD  531 (570)
T ss_dssp             SSCBC
T ss_pred             CCccc
Confidence            55554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.47  E-value=2.7e-13  Score=139.61  Aligned_cols=178  Identities=15%  Similarity=0.131  Sum_probs=94.9

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMF  322 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~  322 (437)
                      .|+.|+|++|.... .+ +..+..+++|++|+|++|.+.+..|..+ .+++|+.|+|++|.+....|. +..+++|+.|+
T Consensus        81 ~L~~L~L~~n~l~~-~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  158 (477)
T 2id5_A           81 NLRTLGLRSNRLKL-IP-LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT  158 (477)
T ss_dssp             TCCEEECCSSCCCS-CC-TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred             cCCEEECCCCcCCc-cC-cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence            35666666654332 22 1234556677777777766333333344 666677777766655444443 66666666666


Q ss_pred             eeCCCCcccCh-hhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccch--------------------
Q 013724          323 LNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNF--------------------  381 (437)
Q Consensus       323 Ls~n~l~~lp~-~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~--------------------  381 (437)
                      |++|.++.+|. .+..+++|+.|+|++|...+..+..+..+++|+.|++++|+.++.+|.                    
T Consensus       159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  238 (477)
T 2id5_A          159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA  238 (477)
T ss_dssp             EESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS
T ss_pred             CCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc
Confidence            66666665553 355566666666666553222223445555555555555444444433                    


Q ss_pred             ----hccCCCCCceeecccccchhhccccccCCCcccccccccCCCCCC
Q 013724          382 ----DIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       382 ----~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                          .+..+++|+.|++.++...  .........+..++.+..+++.+.
T Consensus       239 ~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~  285 (477)
T 2id5_A          239 VPYLAVRHLVYLRFLNLSYNPIS--TIEGSMLHELLRLQEIQLVGGQLA  285 (477)
T ss_dssp             CCHHHHTTCTTCCEEECCSSCCC--EECTTSCTTCTTCCEEECCSSCCS
T ss_pred             cCHHHhcCccccCeeECCCCcCC--ccChhhccccccCCEEECCCCccc
Confidence                4566666666666544322  222223344556666666555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.47  E-value=7.7e-14  Score=135.95  Aligned_cols=152  Identities=14%  Similarity=0.009  Sum_probs=93.3

Q ss_pred             hhhhhhcccCcccCCCCCCccc-cccCceEEEeccCCCCCCCcC----ccC-CCCCccEEeeeCCCCCCCCCC-CCCCCC
Q 013724          245 ALKEKIISACNIFTKTPNPSFS-QHLNTLVVLNLRDCKSLKSLP----AGI-HLEFLKELDLSGCSKLKRLPD-ISSAAN  317 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~-~~l~~L~~L~Ls~n~~l~~lp----~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~  317 (437)
                      .|++|++++|...+..+. .++ ..+++|++|++++|.+.+..+    ..+ .+++|++|+|++|.+....|. +..+++
T Consensus        92 ~L~~L~l~~n~l~~~~~~-~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPP-LPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             CCCEEEEESCCCBSCCCC-CSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             ceeEEEeeCCEeccchhh-hhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            477788888766544433 222 567777777777777443333    111 567777777777766555544 667777


Q ss_pred             CCEEEeeCCCCcc---cCh--hhcCCCCCCEEeccCCCCCCCCccc----cCCCCCCCEEeeeCCCCCCccchhccCC--
Q 013724          318 IEEMFLNGTAIEE---LPS--SIECLYKLLHLDLEDCKSLKSLPSG----LCKLKSLKYLTLNGCSILQRLNFDIWSI--  386 (437)
Q Consensus       318 L~~L~Ls~n~l~~---lp~--~i~~L~~L~~L~L~~n~~l~~LP~~----l~~L~~L~~L~Ls~c~~l~~lP~~l~~L--  386 (437)
                      |++|+|++|.+..   ++.  .++.+++|++|+|++|. ++.+|..    +..+++|++|+|++|...+.+|..+..+  
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  249 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW  249 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence            7777777777652   322  23566777777777766 4554442    3566677777777766555556655555  


Q ss_pred             -CCCceeeccccc
Q 013724          387 -LPLVLTTFIYVY  398 (437)
Q Consensus       387 -~~L~~L~~~~~~  398 (437)
                       ++|+.|++.++.
T Consensus       250 ~~~L~~L~Ls~N~  262 (310)
T 4glp_A          250 SSALNSLNLSFAG  262 (310)
T ss_dssp             CTTCCCEECCSSC
T ss_pred             cCcCCEEECCCCC
Confidence             466666665443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=9.4e-14  Score=124.08  Aligned_cols=130  Identities=20%  Similarity=0.213  Sum_probs=110.5

Q ss_pred             cccCceEEEeccCCCCCCCcCccCCC-CCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhh-cCCCCCCEE
Q 013724          267 QHLNTLVVLNLRDCKSLKSLPAGIHL-EFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHL  344 (437)
Q Consensus       267 ~~l~~L~~L~Ls~n~~l~~lp~~~~l-~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i-~~L~~L~~L  344 (437)
                      ..+.+|+.|++++|. +..+|....+ ++|++|+|++|.+.. ++.+..+++|++|+|++|.|+.+|+.+ ..+++|+.|
T Consensus        16 ~~~~~L~~L~l~~n~-l~~i~~~~~~~~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           16 TNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRK-LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             ECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSCCCE-ECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CCcCCceEEEeeCCC-CchhHHhhhcCCCCCEEECCCCCCCc-ccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            457899999999998 6677654444 499999999987554 467999999999999999999998765 899999999


Q ss_pred             eccCCCCCCCCcc--ccCCCCCCCEEeeeCCCCCCccchh----ccCCCCCceeecccccch
Q 013724          345 DLEDCKSLKSLPS--GLCKLKSLKYLTLNGCSILQRLNFD----IWSILPLVLTTFIYVYKF  400 (437)
Q Consensus       345 ~L~~n~~l~~LP~--~l~~L~~L~~L~Ls~c~~l~~lP~~----l~~L~~L~~L~~~~~~~~  400 (437)
                      +|++|. ++.+|.  .+..+++|++|++++|+. ..+|..    +..+++|+.|++..+...
T Consensus        94 ~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           94 ILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             ECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             ECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            999998 788887  789999999999999875 467764    899999999998766544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.47  E-value=5.2e-14  Score=139.47  Aligned_cols=147  Identities=18%  Similarity=0.121  Sum_probs=69.8

Q ss_pred             hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcC-ccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEE
Q 013724          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLP-AGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMF  322 (437)
Q Consensus       246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp-~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~  322 (437)
                      |+.|++++|..... + +..+..+++|+.|++++|. ++.++ ..+ .+++|++|+|++|.+....+. +.++++|++|+
T Consensus        54 L~~L~l~~n~i~~~-~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           54 VKSLDLSNNRITYI-S-NSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             CCEEECTTSCCCEE-C-TTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred             CcEEECCCCcCccc-C-HHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence            44455555443221 1 1123445555555555554 33332 223 555555555555543322222 45555555555


Q ss_pred             eeCCCCcccCh--hhcCCCCCCEEeccCCCCCCCCc-cccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecc
Q 013724          323 LNGTAIEELPS--SIECLYKLLHLDLEDCKSLKSLP-SGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFI  395 (437)
Q Consensus       323 Ls~n~l~~lp~--~i~~L~~L~~L~L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~  395 (437)
                      |++|.++.+|.  .+..+++|+.|++++|..++.++ ..+..+++|++|++++|...+..|..+..+++|+.|++.
T Consensus       131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  206 (353)
T 2z80_A          131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH  206 (353)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence            55555555544  44555555555555553344332 344555555555555554444445555555555555443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.47  E-value=3.7e-13  Score=131.97  Aligned_cols=133  Identities=16%  Similarity=0.015  Sum_probs=82.0

Q ss_pred             CCCCccEEeeeCCCCCC--CCCC-CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCE
Q 013724          291 HLEFLKELDLSGCSKLK--RLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKY  367 (437)
Q Consensus       291 ~l~~L~~L~Ls~n~~~~--~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~  367 (437)
                      .+++|+.|++++|.+..  ..+. +..+++|++|++++|.++.+|..+.  ++|+.|++++|...+..|..+..+++|++
T Consensus       143 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  220 (330)
T 1xku_A          143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAK  220 (330)
T ss_dssp             TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCE
T ss_pred             CCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence            44555555555544321  2222 5555666666666666665555443  56666777766633334566778888888


Q ss_pred             EeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCcccccccccCCCCCCcc
Q 013724          368 LTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKPSQ  428 (437)
Q Consensus       368 L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~~  428 (437)
                      |++++|...+..+..+..+++|+.|++.++...   ..+.....++.++.+..+++.+...
T Consensus       221 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~~L~~L~l~~N~i~~~  278 (330)
T 1xku_A          221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV---KVPGGLADHKYIQVVYLHNNNISAI  278 (330)
T ss_dssp             EECCSSCCCEECTTTGGGSTTCCEEECCSSCCS---SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred             EECCCCcCceeChhhccCCCCCCEEECCCCcCc---cCChhhccCCCcCEEECCCCcCCcc
Confidence            888887655555557777888888887666433   3344455667778888877777633

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.47  E-value=4.2e-13  Score=142.58  Aligned_cols=84  Identities=21%  Similarity=0.290  Sum_probs=54.3

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM  321 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L  321 (437)
                      .|+.|+|++|...+..  +..++.+++|++|+|++|. +..+|..+  .+++|++|+|++|.+.+..|. +..+++|+.|
T Consensus       100 ~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  176 (597)
T 3oja_B          100 TIQKLYMGFNAIRYLP--PHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL  176 (597)
T ss_dssp             TCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred             CCCEEECCCCcCCCCC--HHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE
Confidence            4666777666543322  2345567777777777776 55666553  677777777777766555554 7777777777


Q ss_pred             EeeCCCCccc
Q 013724          322 FLNGTAIEEL  331 (437)
Q Consensus       322 ~Ls~n~l~~l  331 (437)
                      +|++|.++.+
T Consensus       177 ~L~~N~l~~~  186 (597)
T 3oja_B          177 QLSSNRLTHV  186 (597)
T ss_dssp             ECTTSCCSBC
T ss_pred             ECcCCCCCCc
Confidence            7777776644

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.46  E-value=6.2e-13  Score=128.66  Aligned_cols=176  Identities=21%  Similarity=0.129  Sum_probs=136.5

Q ss_pred             HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEE
Q 013724          244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMF  322 (437)
Q Consensus       244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~  322 (437)
                      ..++.|++++|......  +..+..+++|+.|+|++|. ++.++....+++|++|+|++|.+. .+|. +..+++|++|+
T Consensus        31 ~~l~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFS--LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD  106 (290)
T ss_dssp             TTCCEEECTTSCCSEEE--GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCcCCccC--HHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence            35778888887654322  2346678999999999998 667766558899999999998654 6676 88899999999


Q ss_pred             eeCCCCcccC-hhhcCCCCCCEEeccCCCCCCCCccc-cCCCCCCCEEeeeCCCCCCccchh-ccCCCCCceeecccccc
Q 013724          323 LNGTAIEELP-SSIECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNGCSILQRLNFD-IWSILPLVLTTFIYVYK  399 (437)
Q Consensus       323 Ls~n~l~~lp-~~i~~L~~L~~L~L~~n~~l~~LP~~-l~~L~~L~~L~Ls~c~~l~~lP~~-l~~L~~L~~L~~~~~~~  399 (437)
                      |++|.|+.+| ..+..+++|+.|+|++|. ++.+|.. +..+++|+.|+|++|. +..+|.. +..+++|+.|++.++..
T Consensus       107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l  184 (290)
T 1p9a_G          107 VSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSL  184 (290)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCcC
Confidence            9999999887 468999999999999998 6666654 6889999999999976 4566654 57899999999866544


Q ss_pred             hhhccccccCCCcccccccccCCCCCCcc
Q 013724          400 FFVETSAASGDDWKSAFDAAADGPVKPSQ  428 (437)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~s~~~~~~~  428 (437)
                      .   ..+........++.+..+++.+.|.
T Consensus       185 ~---~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          185 Y---TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             C---CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             C---ccChhhcccccCCeEEeCCCCccCc
Confidence            3   3444444556788888888877653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.46  E-value=4.7e-14  Score=147.59  Aligned_cols=151  Identities=19%  Similarity=0.171  Sum_probs=116.3

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcC-ccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLP-AGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM  321 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp-~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L  321 (437)
                      .|+.|++++|......  +..+..+++|++|++++|. +..++ ..+ .+++|++|+|++|.+....|. ++++++|++|
T Consensus        27 ~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  103 (549)
T 2z81_A           27 AMKSLDLSFNKITYIG--HGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL  103 (549)
T ss_dssp             TCCEEECCSSCCCEEC--SSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred             CccEEECcCCccCccC--hhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence            5777888887654332  2345678889999999888 44444 455 888899999998876666665 8888899999


Q ss_pred             EeeCCCCcc--cChhhcCCCCCCEEeccCCCCCCCCc-cccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccccc
Q 013724          322 FLNGTAIEE--LPSSIECLYKLLHLDLEDCKSLKSLP-SGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVY  398 (437)
Q Consensus       322 ~Ls~n~l~~--lp~~i~~L~~L~~L~L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~  398 (437)
                      +|++|.++.  +|..++.+++|+.|++++|..++.+| ..+.++++|++|++++|...+.+|..++.+++|+.|++..+.
T Consensus       104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred             ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence            999888884  46778888899999998888777776 468888889999998888777788888888888888765544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.46  E-value=4.2e-13  Score=124.53  Aligned_cols=152  Identities=14%  Similarity=0.070  Sum_probs=123.6

Q ss_pred             EEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEEeccCC
Q 013724          273 VVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDC  349 (437)
Q Consensus       273 ~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n  349 (437)
                      +.+++++|. ++.+|..+ ...++.|+|++|.+....|.  +..+++|+.|+|++|.|+.+++ .+..+++|+.|+|++|
T Consensus        14 ~~l~~s~n~-l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQK-LNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSC-CSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCC-cccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            489999998 78888765 34678999999987665453  7899999999999999998876 7999999999999999


Q ss_pred             CCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCcccccccccCCCCCCcc
Q 013724          350 KSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKPSQ  428 (437)
Q Consensus       350 ~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~~  428 (437)
                      ...+..|..+..+++|++|+|++|.+.+..|..+..+++|+.|++.++..  ....+.....+..++.+..+++.+.+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI--TTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC--CCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC--CEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            94444445689999999999999987777788999999999999866543  333345566778888888888877643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.46  E-value=7.2e-13  Score=130.47  Aligned_cols=145  Identities=19%  Similarity=0.308  Sum_probs=97.9

Q ss_pred             HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEe
Q 013724          244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFL  323 (437)
Q Consensus       244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~L  323 (437)
                      ..|+.+++.++..... +   .+..+++|++|++++|. +..++....+++|++|+|++|. +..+|.+..+++|++|++
T Consensus        44 ~~L~~L~l~~~~i~~~-~---~~~~~~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~l  117 (347)
T 4fmz_A           44 ESITKLVVAGEKVASI-Q---GIEYLTNLEYLNLNGNQ-ITDISPLSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYL  117 (347)
T ss_dssp             TTCSEEECCSSCCCCC-T---TGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEEC
T ss_pred             ccccEEEEeCCccccc-h---hhhhcCCccEEEccCCc-cccchhhhcCCcCCEEEccCCc-ccCchHHcCCCcCCEEEC
Confidence            3566677777654322 1   25567788888888876 5566652277888888888775 344566777888888888


Q ss_pred             eCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccccc
Q 013724          324 NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVY  398 (437)
Q Consensus       324 s~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~  398 (437)
                      ++|.+..++. +..+++|+.|++++|..+..++. +..+++|++|++++|... .++. +..+++|+.|++.+|.
T Consensus       118 ~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          118 NEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             TTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSC
T ss_pred             cCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCc
Confidence            8888877765 77778888888887765555544 677777777777776533 3332 6666777777765554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.46  E-value=6.2e-13  Score=133.41  Aligned_cols=82  Identities=22%  Similarity=0.287  Sum_probs=42.3

Q ss_pred             hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEE
Q 013724          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMF  322 (437)
Q Consensus       246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~  322 (437)
                      |+.|++++|......  +..+..+++|++|++++|. ++.+|..+  .+++|++|+|++|.+....|. +..+++|++|+
T Consensus        95 L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  171 (390)
T 3o6n_A           95 IQKLYMGFNAIRYLP--PHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ  171 (390)
T ss_dssp             CCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEE
T ss_pred             cCEEECCCCCCCcCC--HHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEE
Confidence            444555554432211  1234455566666666665 44555443  556666666666554443343 55566666666


Q ss_pred             eeCCCCcc
Q 013724          323 LNGTAIEE  330 (437)
Q Consensus       323 Ls~n~l~~  330 (437)
                      |++|.++.
T Consensus       172 l~~n~l~~  179 (390)
T 3o6n_A          172 LSSNRLTH  179 (390)
T ss_dssp             CCSSCCSB
T ss_pred             CCCCcCCc
Confidence            66655543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.46  E-value=3e-13  Score=130.91  Aligned_cols=169  Identities=18%  Similarity=0.095  Sum_probs=126.8

Q ss_pred             HHhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEE
Q 013724          243 RNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMF  322 (437)
Q Consensus       243 ~~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~  322 (437)
                      ...|+.|++++|..... +   .+..+++|+.|++++|. +..++....+++|++|+|++|.+ ..+|.+..+++|++|+
T Consensus        45 l~~L~~L~l~~~~i~~~-~---~~~~l~~L~~L~L~~n~-l~~~~~l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~  118 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSV-Q---GIQYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDENKV-KDLSSLKDLKKLKSLS  118 (291)
T ss_dssp             HHTCCEEECTTSCCCCC-T---TGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCC-CCGGGGTTCTTCCEEE
T ss_pred             cCcccEEEccCCCcccC-h---hHhcCCCCCEEEccCCc-cCCCcccccCCCCCEEECCCCcC-CCChhhccCCCCCEEE
Confidence            34677888888755432 2   25678999999999998 66666622899999999999864 4567789999999999


Q ss_pred             eeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhh
Q 013724          323 LNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFV  402 (437)
Q Consensus       323 Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~  402 (437)
                      |++|.++.+ +.+..+++|+.|++++|. ++.+ ..+..+++|++|++++|... .++. +..+++|+.|++.++.....
T Consensus       119 L~~n~i~~~-~~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~-~~~~-l~~l~~L~~L~L~~N~i~~l  193 (291)
T 1h6t_A          119 LEHNGISDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISDL  193 (291)
T ss_dssp             CTTSCCCCC-GGGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred             CCCCcCCCC-hhhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCccc-cchh-hcCCCccCEEECCCCcCCCC
Confidence            999999987 468889999999999988 6666 56889999999999998654 4544 88999999999877644322


Q ss_pred             ccccccCCCcccccccccCCCCCC
Q 013724          403 ETSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       403 ~~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                      .    ....+++++.+..+++.+.
T Consensus       194 ~----~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          194 R----ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             G----GGTTCTTCSEEEEEEEEEE
T ss_pred             h----hhccCCCCCEEECcCCccc
Confidence            1    2344556666665555443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.46  E-value=1.3e-13  Score=121.98  Aligned_cols=133  Identities=23%  Similarity=0.307  Sum_probs=110.5

Q ss_pred             HhhhhhhcccCccc-CCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCE
Q 013724          244 NALKEKIISACNIF-TKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEE  320 (437)
Q Consensus       244 ~aL~~L~Ls~~~~~-~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~  320 (437)
                      ..|+.|++++|... +..  +..+..+++|+.|++++|. +..+ ..+ .+++|++|+|++|.+...+|. +..+++|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i--~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKI--EGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TSCSEEECCSCBCBTTBC--SSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             ccCCEEECCCCCCChhhH--HHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            46788999998764 233  3446789999999999998 6666 445 999999999999987776777 566999999


Q ss_pred             EEeeCCCCcccC--hhhcCCCCCCEEeccCCCCCCCCcc----ccCCCCCCCEEeeeCCCCCCccchh
Q 013724          321 MFLNGTAIEELP--SSIECLYKLLHLDLEDCKSLKSLPS----GLCKLKSLKYLTLNGCSILQRLNFD  382 (437)
Q Consensus       321 L~Ls~n~l~~lp--~~i~~L~~L~~L~L~~n~~l~~LP~----~l~~L~~L~~L~Ls~c~~l~~lP~~  382 (437)
                      |+|++|.|+.+|  ..+..+++|+.|++++|. +..+|.    .+..+++|++|++++|. ..++|..
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~  165 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS  165 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence            999999999876  789999999999999998 667776    78999999999999986 4556643

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.46  E-value=3.7e-13  Score=142.54  Aligned_cols=148  Identities=20%  Similarity=0.156  Sum_probs=70.2

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM  321 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L  321 (437)
                      .|+.|++++|... ..  |..+..+++|++|++++|.+.+..|..+ .+++|+.|++++|.+...+|.  +..+++|++|
T Consensus       279 ~L~~L~l~~n~l~-~l--p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  355 (606)
T 3t6q_A          279 GLQELDLTATHLS-EL--PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL  355 (606)
T ss_dssp             TCSEEECTTSCCS-CC--CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred             CCCEEeccCCccC-CC--ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence            3555666655433 11  2234455666666666665222223333 555555555555554444443  5555555555


Q ss_pred             EeeCCCCccc---ChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccch-hccCCCCCceeecc
Q 013724          322 FLNGTAIEEL---PSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNF-DIWSILPLVLTTFI  395 (437)
Q Consensus       322 ~Ls~n~l~~l---p~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~-~l~~L~~L~~L~~~  395 (437)
                      ++++|.+..+   |..++.+++|+.|++++|...+..|..+..+++|++|++++|...+..|. .+..+++|+.|++.
T Consensus       356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  433 (606)
T 3t6q_A          356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS  433 (606)
T ss_dssp             ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred             ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence            5555555533   33455555555555555543333334444444444444444443333222 23444444444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.45  E-value=2.5e-13  Score=129.63  Aligned_cols=144  Identities=23%  Similarity=0.224  Sum_probs=112.5

Q ss_pred             HHhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEE
Q 013724          243 RNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEM  321 (437)
Q Consensus       243 ~~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L  321 (437)
                      ...|+.|++++|.... .+   .+..+++|+.|++++|. +..++. + .+++|+.|+|++|.+ ..+|.+.. ++|+.|
T Consensus        40 l~~L~~L~l~~n~i~~-l~---~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N~l-~~l~~~~~-~~L~~L  111 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQS-LA---GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRNRL-KNLNGIPS-ACLSRL  111 (263)
T ss_dssp             HTTCSEEECTTSCCCC-CT---TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSSCC-SCCTTCCC-SSCCEE
T ss_pred             cCcCcEEECcCCCccc-ch---HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCCcc-CCcCcccc-CcccEE
Confidence            3467778888875432 22   35678899999999998 666776 5 889999999999864 44666555 889999


Q ss_pred             EeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724          322 FLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       322 ~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~  399 (437)
                      +|++|.|+.++ .+..+++|+.|+|++|. ++.+| .+..+++|+.|++++|...+ + ..+..+++|+.|++.++..
T Consensus       112 ~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~-~-~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          112 FLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITN-T-GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             ECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCB-C-TTSTTCCCCCEEEEEEEEE
T ss_pred             EccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcc-h-HHhccCCCCCEEeCCCCcc
Confidence            99999999875 58889999999999988 67776 68889999999999977544 4 5788889999998866543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.45  E-value=8.3e-13  Score=136.01  Aligned_cols=142  Identities=15%  Similarity=0.031  Sum_probs=65.5

Q ss_pred             ccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEec
Q 013724          268 HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDL  346 (437)
Q Consensus       268 ~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L  346 (437)
                      .+++|++|++++|. ++.++  + .+++|++|+|++|.+.. +| ++.+++|++|++++|.++.++  ++.+++|+.|++
T Consensus        83 ~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l  155 (457)
T 3bz5_A           83 QNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDC  155 (457)
T ss_dssp             TCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECCSSCCSC-CC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEEC
T ss_pred             cCCCCCEEECcCCC-Cceee--cCCCCcCCEEECCCCcCCe-ec-CCCCCcCCEEECCCCccceec--cccCCcCCEEEC
Confidence            34444445554444 33332  2 44445555555443322 22 444455555555555554442  444555555555


Q ss_pred             cCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCcccccccccCCCCCC
Q 013724          347 EDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       347 ~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                      ++|..++.+  .++.+++|++|++++|.. ..+|  +..+++|+.|++.++.....     ....++.++.+..+++.+.
T Consensus       156 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l-~~l~--l~~l~~L~~L~l~~N~l~~~-----~l~~l~~L~~L~Ls~N~l~  225 (457)
T 3bz5_A          156 HLNKKITKL--DVTPQTQLTTLDCSFNKI-TELD--VSQNKLLNRLNCDTNNITKL-----DLNQNIQLTFLDCSSNKLT  225 (457)
T ss_dssp             TTCSCCCCC--CCTTCTTCCEEECCSSCC-CCCC--CTTCTTCCEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCS
T ss_pred             CCCCccccc--ccccCCcCCEEECCCCcc-ceec--cccCCCCCEEECcCCcCCee-----ccccCCCCCEEECcCCccc
Confidence            555444444  244555555555555432 2344  45555555555544332211     1233445555555555444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.45  E-value=3.2e-13  Score=133.79  Aligned_cols=152  Identities=16%  Similarity=0.108  Sum_probs=123.1

Q ss_pred             CceEEEeccCCCCCCCcCc-cC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChh-hcCCCCCCEEe
Q 013724          270 NTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHLD  345 (437)
Q Consensus       270 ~~L~~L~Ls~n~~l~~lp~-~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~  345 (437)
                      ++|++|++++|. ++.+|. .+ .+++|++|+|++|.+....|. +.++++|++|+|++|.|+.+|.. ++.+++|++|+
T Consensus        52 ~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           52 EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred             ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence            589999999998 667776 45 999999999999977666565 99999999999999999999876 89999999999


Q ss_pred             ccCCCCCCCCcc--ccCCCCCCCEEeeeCCCCCCcc-chhccCCCCCceeecccccchhhccccccCCCcccccccccCC
Q 013724          346 LEDCKSLKSLPS--GLCKLKSLKYLTLNGCSILQRL-NFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADG  422 (437)
Q Consensus       346 L~~n~~l~~LP~--~l~~L~~L~~L~Ls~c~~l~~l-P~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~  422 (437)
                      +++|. ++.+|.  .+..+++|++|++++|+.++.+ |..+..+++|+.|++.++...  ...+.....++.++.+..++
T Consensus       131 L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~  207 (353)
T 2z80_A          131 LLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ--SYEPKSLKSIQNVSHLILHM  207 (353)
T ss_dssp             CTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC--EECTTTTTTCSEEEEEEEEC
T ss_pred             CCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC--ccCHHHHhccccCCeecCCC
Confidence            99998 778886  6899999999999999767776 467899999999998766432  22234444555666665555


Q ss_pred             CCC
Q 013724          423 PVK  425 (437)
Q Consensus       423 ~~~  425 (437)
                      +.+
T Consensus       208 n~l  210 (353)
T 2z80_A          208 KQH  210 (353)
T ss_dssp             SCS
T ss_pred             Ccc
Confidence            543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.45  E-value=8.6e-13  Score=122.39  Aligned_cols=151  Identities=19%  Similarity=0.149  Sum_probs=123.6

Q ss_pred             EEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCccc-ChhhcCCCCCCEEeccCCC
Q 013724          273 VVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDCK  350 (437)
Q Consensus       273 ~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~L~~n~  350 (437)
                      +.++++++. ++.+|..+. ++|+.|+|++|.+....+. +..+++|+.|+|++|.|+.+ |..+..+++|++|+|++|.
T Consensus        14 ~~v~c~~~~-l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKG-LTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSC-CSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCC-cCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            578888887 888887653 7899999999876655554 89999999999999999977 7789999999999999998


Q ss_pred             CCCCCccc-cCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCcccccccccCCCCCCcc
Q 013724          351 SLKSLPSG-LCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKPSQ  428 (437)
Q Consensus       351 ~l~~LP~~-l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~~  428 (437)
                       +..+|.. +..+++|++|+|++|...+..|..+..+++|+.|++.++...  ...+.....+..++.+..+++.+.+.
T Consensus        92 -l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B           92 -ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ--TIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             -CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             -CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC--EECHHHHhCCCCCCEEEeCCCCcCCC
Confidence             7778765 688999999999999877777888999999999998665433  22233455677888888888877643

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.44  E-value=7.2e-13  Score=121.27  Aligned_cols=139  Identities=25%  Similarity=0.305  Sum_probs=109.5

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM  321 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L  321 (437)
                      .|+.|++++|.... .+ +..+..+++|++|++++|. +..+|...  .+++|++|+|++|.+....+. +..+++|++|
T Consensus        29 ~l~~L~l~~n~l~~-~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           29 QTTYLDLETNSLKS-LP-NGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             TCSEEECCSSCCCC-CC-TTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCcEEEcCCCccCc-CC-hhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence            46778888886643 22 2346778999999999998 66777654  899999999999876654444 7899999999


Q ss_pred             EeeCCCCcccChh-hcCCCCCCEEeccCCCCCCCCccc-cCCCCCCCEEeeeCCCCCCccchhccCCCCCceeec
Q 013724          322 FLNGTAIEELPSS-IECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTF  394 (437)
Q Consensus       322 ~Ls~n~l~~lp~~-i~~L~~L~~L~L~~n~~l~~LP~~-l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~  394 (437)
                      +|++|.|+.+|.. +..+++|+.|+|++|. ++.+|.. +..+++|++|++++|+..+.       ++.|+.|++
T Consensus       106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~  172 (208)
T 2o6s_A          106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSE  172 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHH
T ss_pred             EcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHH
Confidence            9999999988765 7899999999999998 5566654 78999999999999876543       345555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.44  E-value=5.1e-13  Score=141.23  Aligned_cols=125  Identities=23%  Similarity=0.213  Sum_probs=76.7

Q ss_pred             ceEEEeccCCCCCCCcCcc-C-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEEec
Q 013724          271 TLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDL  346 (437)
Q Consensus       271 ~L~~L~Ls~n~~l~~lp~~-~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L  346 (437)
                      ++++|+|++|. ++.+|.. + .+++|++|+|++|.+....|. |.++++|++|+|++|+|+.+|+ .|.+|++|++|+|
T Consensus        53 ~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           53 STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             CCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            56667777666 5555543 3 666777777776654433333 6666677777777776666654 3566677777777


Q ss_pred             cCCCCCCCCcc-ccCCCCCCCEEeeeCCCCCC-ccchhccCCCCCceeecccc
Q 013724          347 EDCKSLKSLPS-GLCKLKSLKYLTLNGCSILQ-RLNFDIWSILPLVLTTFIYV  397 (437)
Q Consensus       347 ~~n~~l~~LP~-~l~~L~~L~~L~Ls~c~~l~-~lP~~l~~L~~L~~L~~~~~  397 (437)
                      ++|. +..+|. .++++++|++|++++|.... .+|..++.+++|+.|++.++
T Consensus       132 s~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          132 VETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             TTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             CCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence            7666 444443 36666677777776665433 35566666666666666543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.44  E-value=2.4e-13  Score=144.06  Aligned_cols=158  Identities=13%  Similarity=0.025  Sum_probs=87.7

Q ss_pred             ccccCceEEEeccCCCCCCCcCcc-C-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcc--cC--hhhcCC
Q 013724          266 SQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEE--LP--SSIECL  338 (437)
Q Consensus       266 ~~~l~~L~~L~Ls~n~~l~~lp~~-~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~--lp--~~i~~L  338 (437)
                      +..+++|+.|++++|.+.+..|.. + .+++|+.|+|++|.+....|. +..+++|++|+|++|.+..  +|  ..+..+
T Consensus       396 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l  475 (606)
T 3t6q_A          396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL  475 (606)
T ss_dssp             TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC
T ss_pred             hcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC
Confidence            334555555555555533333332 2 556666666666655444444 5566666666666666653  22  345666


Q ss_pred             CCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCccccccc
Q 013724          339 YKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDA  418 (437)
Q Consensus       339 ~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~  418 (437)
                      ++|+.|+|++|...+..|..+..+++|++|+|++|...+..|..+.+++.| .|++.++...  ...+.....++.++.+
T Consensus       476 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~--~~~~~~~~~l~~L~~L  552 (606)
T 3t6q_A          476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS--IILPSLLPILSQQRTI  552 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC--CCCGGGHHHHHTSSEE
T ss_pred             CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc--ccCHhhcccCCCCCEE
Confidence            666666666666444445566666666666666666666666666666666 6665444322  1222222334555666


Q ss_pred             ccCCCCCC
Q 013724          419 AADGPVKP  426 (437)
Q Consensus       419 ~~s~~~~~  426 (437)
                      ..+++.+.
T Consensus       553 ~l~~N~~~  560 (606)
T 3t6q_A          553 NLRQNPLD  560 (606)
T ss_dssp             ECTTCCEE
T ss_pred             eCCCCCcc
Confidence            66666554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.44  E-value=2.9e-13  Score=132.94  Aligned_cols=147  Identities=18%  Similarity=0.182  Sum_probs=86.2

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCC--CCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSL--KSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEE  320 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l--~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~  320 (437)
                      .|+.|++++|.... .+ +..+..+++|+.|++++|.+.  +..|..+ .+ +|+.|++++|.+. .+|. +.  ++|+.
T Consensus       124 ~L~~L~l~~n~i~~-~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~--~~L~~  197 (332)
T 2ft3_A          124 SLVELRIHDNRIRK-VP-KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP--ETLNE  197 (332)
T ss_dssp             TCCEEECCSSCCCC-CC-SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC--SSCSC
T ss_pred             cCCEEECCCCccCc-cC-HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc--CCCCE
Confidence            56677777765432 22 233556777788888777632  1333333 44 6777777766533 3443 22  56666


Q ss_pred             EEeeCCCCcccC-hhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccccc
Q 013724          321 MFLNGTAIEELP-SSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVY  398 (437)
Q Consensus       321 L~Ls~n~l~~lp-~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~  398 (437)
                      |+|++|.++.++ ..+..+++|+.|+|++|...+..|..+..+++|+.|++++|. +..+|..+..+++|+.|++.++.
T Consensus       198 L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             CBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSC
T ss_pred             EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCC
Confidence            666666666554 456666666777776666333333356666666677766654 34666666666666666665443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.44  E-value=6.5e-13  Score=126.70  Aligned_cols=122  Identities=22%  Similarity=0.266  Sum_probs=64.4

Q ss_pred             cccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEe
Q 013724          267 QHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLD  345 (437)
Q Consensus       267 ~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~  345 (437)
                      ..+++|+.|++++|. +..+| .+ .+++|+.|+|++|.+.. +|.+..+++|+.|+|++|.++.+|....  ++|+.|+
T Consensus        38 ~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i~~-~~~l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~  112 (263)
T 1xeu_A           38 KELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQISD-LSPLKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF  112 (263)
T ss_dssp             HHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred             hhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCccCC-ChhhccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence            345555666666554 44455 23 55566666666554332 2335555566666666665555544222  5566666


Q ss_pred             ccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724          346 LEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV  397 (437)
Q Consensus       346 L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~  397 (437)
                      |++|. ++.+| .+..+++|+.|++++|. +..+| .+..+++|+.|++.++
T Consensus       113 L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N  160 (263)
T 1xeu_A          113 LDNNE-LRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGN  160 (263)
T ss_dssp             CCSSC-CSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTS
T ss_pred             ccCCc-cCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCC
Confidence            66555 44443 35555666666665544 33344 4555555665555444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.44  E-value=4.3e-13  Score=139.54  Aligned_cols=173  Identities=11%  Similarity=0.069  Sum_probs=116.6

Q ss_pred             hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCC--CCCC-CCCCCCCCEE
Q 013724          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLK--RLPD-ISSAANIEEM  321 (437)
Q Consensus       246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~--~lp~-l~~l~~L~~L  321 (437)
                      |+.|++++|......    +...+++|++|++++|.+.+.+|..+ .+++|+.|+|++|.+..  .+|. +..+++|++|
T Consensus       304 L~~L~l~~n~l~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L  379 (520)
T 2z7x_B          304 IKNFTVSGTRMVHML----CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL  379 (520)
T ss_dssp             CSEEEEESSCCCCCC----CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEE
T ss_pred             eeEEEcCCCcccccc----chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEE
Confidence            677777777543221    12467788888888887555567666 78888888888876554  3444 7778888888


Q ss_pred             EeeCCCCcc-cChh-hcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724          322 FLNGTAIEE-LPSS-IECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       322 ~Ls~n~l~~-lp~~-i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~  399 (437)
                      +|++|.+.. +|.. +..+++|+.|++++|...+.+|..+.  ++|+.|++++|.. ..+|..+..+++|+.|++.+|..
T Consensus       380 ~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l-~~ip~~~~~l~~L~~L~L~~N~l  456 (520)
T 2z7x_B          380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQL  456 (520)
T ss_dssp             ECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcc-cccchhhhcCCCCCEEECCCCcC
Confidence            888888885 7764 66777888888888775566665543  6777777777653 47777777777777777766533


Q ss_pred             hhhcccccc-CCCcccccccccCCCCCCcc
Q 013724          400 FFVETSAAS-GDDWKSAFDAAADGPVKPSQ  428 (437)
Q Consensus       400 ~~~~~~~~~-~~~~~~l~~~~~s~~~~~~~  428 (437)
                      .   ..+.. ...++.++.+..+++.+.+.
T Consensus       457 ~---~l~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          457 K---SVPDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             C---CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             C---ccCHHHhccCCcccEEECcCCCCccc
Confidence            3   22222 44566677777777766643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.44  E-value=3.3e-13  Score=126.28  Aligned_cols=150  Identities=13%  Similarity=0.127  Sum_probs=121.6

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccC-CCCCCCcCccC--CCCCccEEeeeCCCCCCCCCCCCCCCCCC--
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRD-CKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDISSAANIE--  319 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~--  319 (437)
                      .|+.|++++|..++..+. ..+..+++|++|++++ |. +..+|...  .+++|++|+|++|.+. .+|.+..+++|+  
T Consensus        56 ~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~~~~l~~L~~L  132 (239)
T 2xwt_C           56 NISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIF  132 (239)
T ss_dssp             TCCEEEEECCSSCCEECT-TTEESCTTCCEEEEEEETT-CCEECTTSEECCTTCCEEEEEEECCC-SCCCCTTCCBCCSE
T ss_pred             CCcEEeCCCCCCcceeCH-hHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCEEeCCCCCCc-cccccccccccccc
Confidence            578899998863444332 2456789999999998 66 77777654  8999999999998755 478888888888  


Q ss_pred             -EEEeeCC-CCcccCh-hhcCCCCCC-EEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccc-hhccCC-CCCceee
Q 013724          320 -EMFLNGT-AIEELPS-SIECLYKLL-HLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLN-FDIWSI-LPLVLTT  393 (437)
Q Consensus       320 -~L~Ls~n-~l~~lp~-~i~~L~~L~-~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP-~~l~~L-~~L~~L~  393 (437)
                       +|++++| .++.+|. .+..+++|+ .|++++|. +..+|......++|+.|++++|..+..+| ..+..+ ++|+.|+
T Consensus       133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~  211 (239)
T 2xwt_C          133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD  211 (239)
T ss_dssp             EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred             cEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence             9999999 9998876 488999999 99999998 67888776555899999999986566775 568888 9999999


Q ss_pred             ccccc
Q 013724          394 FIYVY  398 (437)
Q Consensus       394 ~~~~~  398 (437)
                      +.++.
T Consensus       212 l~~N~  216 (239)
T 2xwt_C          212 VSQTS  216 (239)
T ss_dssp             CTTCC
T ss_pred             CCCCc
Confidence            86543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.43  E-value=1.7e-13  Score=133.66  Aligned_cols=171  Identities=16%  Similarity=0.104  Sum_probs=127.6

Q ss_pred             hhhhhhcccCcccCCCCCCcccccc-----CceEEEeccCCCCCCCcC-ccC-CCCCccEEeeeCCCCCCC--CC-CC--
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHL-----NTLVVLNLRDCKSLKSLP-AGI-HLEFLKELDLSGCSKLKR--LP-DI--  312 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l-----~~L~~L~Ls~n~~l~~lp-~~~-~l~~L~~L~Ls~n~~~~~--lp-~l--  312 (437)
                      .|+.|++++|...+.   +..+..+     ++|++|++++|. ++.++ ..+ .+++|++|+|++|.+.+.  +| .+  
T Consensus       122 ~L~~L~Ls~N~l~~~---~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          122 DLNILNLRNVSWATR---DAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CCSEEEEESCBCSSS---SSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             CccEEEccCCCCcch---hHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            477888888876544   2344555     899999999998 45555 556 899999999999987654  22 33  


Q ss_pred             CCCCCCCEEEeeCCCCcccC---h-hhcCCCCCCEEeccCCCCCCCCc-cccCCCCCCCEEeeeCCCCCCccchhccCCC
Q 013724          313 SSAANIEEMFLNGTAIEELP---S-SIECLYKLLHLDLEDCKSLKSLP-SGLCKLKSLKYLTLNGCSILQRLNFDIWSIL  387 (437)
Q Consensus       313 ~~l~~L~~L~Ls~n~l~~lp---~-~i~~L~~L~~L~L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~  387 (437)
                      ..+++|++|+|++|.|+.++   . .+..+++|+.|+|++|...+..| ..+..+++|++|++++|.. ..+|..+.  +
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l-~~ip~~~~--~  274 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGLP--A  274 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC-SSCCSSCC--S
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc-Chhhhhcc--C
Confidence            78999999999999998543   3 34578999999999998545454 4466789999999999875 48898777  8


Q ss_pred             CCceeecccccchhhccccccCCCcccccccccCCCCCC
Q 013724          388 PLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       388 ~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                      +|+.|++.++.....   +. ...++.++.+..+++.+.
T Consensus       275 ~L~~L~Ls~N~l~~~---p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          275 KLSVLDLSYNRLDRN---PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             EEEEEECCSSCCCSC---CC-TTTSCEEEEEECTTCTTT
T ss_pred             CceEEECCCCCCCCC---hh-HhhCCCCCEEeccCCCCC
Confidence            899999876644322   33 566788888888887664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.43  E-value=1.4e-13  Score=134.11  Aligned_cols=175  Identities=16%  Similarity=0.033  Sum_probs=129.4

Q ss_pred             hhhhhhcccCcccCCCCCC--ccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCC--CC--C-CCCCC
Q 013724          245 ALKEKIISACNIFTKTPNP--SFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKR--LP--D-ISSAA  316 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~--~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~--lp--~-l~~l~  316 (437)
                      .|+.|++++|...+..+..  ..+..+++|++|++++|.+.+..|..+ .+++|++|+|++|.+.+.  ++  . +..++
T Consensus       118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~  197 (310)
T 4glp_A          118 ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP  197 (310)
T ss_dssp             CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC
T ss_pred             CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC
Confidence            4777888888765432210  122368899999999999544444555 899999999999986542  22  2 47899


Q ss_pred             CCCEEEeeCCCCcccChh----hcCCCCCCEEeccCCCCCCCCccccCCC---CCCCEEeeeCCCCCCccchhccCCCCC
Q 013724          317 NIEEMFLNGTAIEELPSS----IECLYKLLHLDLEDCKSLKSLPSGLCKL---KSLKYLTLNGCSILQRLNFDIWSILPL  389 (437)
Q Consensus       317 ~L~~L~Ls~n~l~~lp~~----i~~L~~L~~L~L~~n~~l~~LP~~l~~L---~~L~~L~Ls~c~~l~~lP~~l~~L~~L  389 (437)
                      +|++|+|++|.++.++..    ++.+++|++|+|++|...+..|..+..+   ++|++|+|++|... .+|..+.  ++|
T Consensus       198 ~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L  274 (310)
T 4glp_A          198 AIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKL  274 (310)
T ss_dssp             CCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCC
T ss_pred             CCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCC
Confidence            999999999999877653    5788999999999999555558877776   69999999998754 8898775  799


Q ss_pred             ceeecccccchhhccccccCCCcccccccccCCCCCC
Q 013724          390 VLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       390 ~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                      +.|++.++.....   +. ...++.++.+..+++.+.
T Consensus       275 ~~L~Ls~N~l~~~---~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          275 RVLDLSSNRLNRA---PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             SCEECCSCCCCSC---CC-TTSCCCCSCEECSSTTTS
T ss_pred             CEEECCCCcCCCC---ch-hhhCCCccEEECcCCCCC
Confidence            9999877655422   11 345577778888777654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.43  E-value=1.4e-12  Score=128.51  Aligned_cols=151  Identities=15%  Similarity=0.144  Sum_probs=75.8

Q ss_pred             ccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCC----------------------CCCCCEEEe
Q 013724          266 SQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISS----------------------AANIEEMFL  323 (437)
Q Consensus       266 ~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~----------------------l~~L~~L~L  323 (437)
                      +..+++|++|++++|. +..++....+++|+.|++++|.....++.+..                      +++|+.|++
T Consensus       106 ~~~l~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l  184 (347)
T 4fmz_A          106 LQNLTNLRELYLNEDN-ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSL  184 (347)
T ss_dssp             GTTCTTCSEEECTTSC-CCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred             HcCCCcCCEEECcCCc-ccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEc
Confidence            3344555555555554 33333311444555555555444444444444                      444555555


Q ss_pred             eCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhc
Q 013724          324 NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVE  403 (437)
Q Consensus       324 s~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~  403 (437)
                      ++|.+..++. +..+++|+.|++++|. +..++. +..+++|++|++++|.. ..+|. +..+++|+.|++.+|..... 
T Consensus       185 ~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~~n~l~~~-  258 (347)
T 4fmz_A          185 NYNQIEDISP-LASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNNKI-TDLSP-LANLSQLTWLEIGTNQISDI-  258 (347)
T ss_dssp             TTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCCCCC-
T ss_pred             cCCccccccc-ccCCCccceeecccCC-CCCCch-hhcCCcCCEEEccCCcc-CCCcc-hhcCCCCCEEECCCCccCCC-
Confidence            5544444433 4445555555555544 333333 55666777777777653 33443 66777777777665543321 


Q ss_pred             cccccCCCcccccccccCCCCCC
Q 013724          404 TSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       404 ~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                         .....++.++.+..+++.+.
T Consensus       259 ---~~~~~l~~L~~L~l~~n~l~  278 (347)
T 4fmz_A          259 ---NAVKDLTKLKMLNVGSNQIS  278 (347)
T ss_dssp             ---GGGTTCTTCCEEECCSSCCC
T ss_pred             ---hhHhcCCCcCEEEccCCccC
Confidence               12334455555555555443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.43  E-value=6.5e-13  Score=120.51  Aligned_cols=109  Identities=24%  Similarity=0.273  Sum_probs=81.5

Q ss_pred             ceEEEeccCCCCCCCcCcc--C-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEEe
Q 013724          271 TLVVLNLRDCKSLKSLPAG--I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLD  345 (437)
Q Consensus       271 ~L~~L~Ls~n~~l~~lp~~--~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~  345 (437)
                      +|+.|++++|. ++.++..  + .+++|++|+|++|.+.+..|. +..+++|++|+|++|.|+.++. .+..+++|++|+
T Consensus        30 ~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           30 HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            77888888887 5555543  4 788888888888876666665 7788888888888888886654 477788888888


Q ss_pred             ccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccc
Q 013724          346 LEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLN  380 (437)
Q Consensus       346 L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP  380 (437)
                      |++|...+..|..+..+++|++|+|++|+.....+
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            88887555557777888888888888887665544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.42  E-value=5.5e-14  Score=137.49  Aligned_cols=148  Identities=13%  Similarity=0.010  Sum_probs=93.5

Q ss_pred             hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEe
Q 013724          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDISSAANIEEMFL  323 (437)
Q Consensus       246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~L  323 (437)
                      |+.|++++|......  +..+..+++|++|++++|.+.+..+..+  .+++|++|+|++|.+ ..+|....+++|+.|+|
T Consensus       122 L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~l~~L~~L~L  198 (317)
T 3o53_A          122 KKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDVKGQVVFAKLKTLDL  198 (317)
T ss_dssp             CEEEECCSSCCCSGG--GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-CEEECCCCCTTCCEEEC
T ss_pred             CCEEECCCCCCCCcc--chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC-cccccccccccCCEEEC
Confidence            555666655443321  1234456777777777776333233333  467777777777653 33455455777777777


Q ss_pred             eCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCC-CccchhccCCCCCceeecccc
Q 013724          324 NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSIL-QRLNFDIWSILPLVLTTFIYV  397 (437)
Q Consensus       324 s~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l-~~lP~~l~~L~~L~~L~~~~~  397 (437)
                      ++|.|+.+|+.+..+++|+.|+|++|. ++.+|..+..+++|+.|++++|+.. +.+|..+..+++|+.|++..+
T Consensus       199 s~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          199 SSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             CSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCcCCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            777777777667777777777777776 5567777777777777777777665 566666777777776665433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.42  E-value=8.5e-13  Score=129.60  Aligned_cols=105  Identities=14%  Similarity=-0.016  Sum_probs=69.0

Q ss_pred             CCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccc
Q 013724          317 NIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIY  396 (437)
Q Consensus       317 ~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~  396 (437)
                      +|+.|++++|.++.+|..+.  ++|+.|++++|...+..|..+..+++|++|++++|...+..|..+..+++|+.|++.+
T Consensus       173 ~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  250 (332)
T 2ft3_A          173 KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN  250 (332)
T ss_dssp             CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred             ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC
Confidence            44444444444444444332  5777777777774343446788889999999999876666666788899999999876


Q ss_pred             ccchhhccccccCCCcccccccccCCCCCC
Q 013724          397 VYKFFVETSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                      +...   ..+.....++.++.+..+++.+.
T Consensus       251 N~l~---~lp~~l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          251 NKLS---RVPAGLPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             SCCC---BCCTTGGGCTTCCEEECCSSCCC
T ss_pred             CcCe---ecChhhhcCccCCEEECCCCCCC
Confidence            6443   33444455666777777766665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.42  E-value=5.3e-13  Score=147.50  Aligned_cols=152  Identities=20%  Similarity=0.171  Sum_probs=105.5

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCc-CccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM  321 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~l-p~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L  321 (437)
                      .++.|+|++|......  +..+..+++|++|+|++|...+.+ |..+ .+++|++|+|++|.+....|. |.++++|++|
T Consensus        25 ~l~~LdLs~N~i~~i~--~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           25 TTERLLLSFNYIRTVT--ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             TCCEEEEESCCCCEEC--SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CcCEEECCCCcCCccC--hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            4667777776554322  234566788888888888656666 3444 778888888888776666565 7788888888


Q ss_pred             EeeCCCCcc-cChh--hcCCCCCCEEeccCCCCCCCCc-cccCCCCCCCEEeeeCCCCCCccchhccCC--CCCceeecc
Q 013724          322 FLNGTAIEE-LPSS--IECLYKLLHLDLEDCKSLKSLP-SGLCKLKSLKYLTLNGCSILQRLNFDIWSI--LPLVLTTFI  395 (437)
Q Consensus       322 ~Ls~n~l~~-lp~~--i~~L~~L~~L~L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L--~~L~~L~~~  395 (437)
                      +|++|.+.. +|..  +++|++|++|+|++|...+..| ..++++++|++|+|++|...+..|..+..+  ++|+.|++.
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~  182 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA  182 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence            888888773 5554  7778888888888877443333 457788888888888877766667766666  677777765


Q ss_pred             ccc
Q 013724          396 YVY  398 (437)
Q Consensus       396 ~~~  398 (437)
                      .+.
T Consensus       183 ~n~  185 (844)
T 3j0a_A          183 ANS  185 (844)
T ss_dssp             CSB
T ss_pred             CCc
Confidence            443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.41  E-value=1.4e-13  Score=149.64  Aligned_cols=120  Identities=21%  Similarity=0.308  Sum_probs=104.5

Q ss_pred             CccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChhhcCCCC
Q 013724          263 PSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYK  340 (437)
Q Consensus       263 ~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~  340 (437)
                      +..+..++.|+.|+|++|. +..+|..+ .+++|++|+|++|.+. .+|. |+.|++|++|+|++|.|+.+|..|+.|++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~  294 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ  294 (727)
T ss_dssp             -----CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred             hhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence            3456678999999999998 66888877 9999999999999766 7776 99999999999999999999999999999


Q ss_pred             CCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccC
Q 013724          341 LLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWS  385 (437)
Q Consensus       341 L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~  385 (437)
                      |++|+|++|. ++.+|..|+.|++|++|+|++|++.+.+|..+..
T Consensus       295 L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          295 LKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             CSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred             CCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence            9999999998 7899999999999999999999988888876543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.41  E-value=1.5e-12  Score=134.02  Aligned_cols=101  Identities=27%  Similarity=0.375  Sum_probs=42.3

Q ss_pred             cCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccC
Q 013724          269 LNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLED  348 (437)
Q Consensus       269 l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~  348 (437)
                      +++|+.|++++|. +..++....+++|+.|++++|.+... +.+..+++|+.|++++|.+..++. +..+++|+.|++++
T Consensus       220 l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~  296 (466)
T 1o6v_A          220 LTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNE  296 (466)
T ss_dssp             CTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCS
T ss_pred             cCCCCEEECCCCC-cccchhhhcCCCCCEEECCCCccccc-hhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCC
Confidence            4444444444444 33332211444444444444433222 224444444444444444444433 44444444444444


Q ss_pred             CCCCCCCccccCCCCCCCEEeeeCCC
Q 013724          349 CKSLKSLPSGLCKLKSLKYLTLNGCS  374 (437)
Q Consensus       349 n~~l~~LP~~l~~L~~L~~L~Ls~c~  374 (437)
                      |. +..++. +..+++|+.|++++|.
T Consensus       297 n~-l~~~~~-~~~l~~L~~L~L~~n~  320 (466)
T 1o6v_A          297 NQ-LEDISP-ISNLKNLTYLTLYFNN  320 (466)
T ss_dssp             SC-CSCCGG-GGGCTTCSEEECCSSC
T ss_pred             Cc-ccCchh-hcCCCCCCEEECcCCc
Confidence            44 233322 3444444444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.40  E-value=4.8e-13  Score=133.34  Aligned_cols=147  Identities=20%  Similarity=0.139  Sum_probs=113.0

Q ss_pred             hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCcc-C-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEE
Q 013724          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMF  322 (437)
Q Consensus       246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~-~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~  322 (437)
                      ++.|+|++|..... +...+...+++|+.|+|++|. +..++.. + .+++|++|+|++|.+....+. |..+++|+.|+
T Consensus        41 l~~L~Ls~N~l~~l-~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           41 TALLDLSHNNLSRL-RAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             CSEEECCSSCCCEE-CTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCEEECCCCCCCcc-ChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            56788888765433 222222278999999999998 6666654 5 899999999999876554454 88999999999


Q ss_pred             eeCCCCccc-ChhhcCCCCCCEEeccCCCCCCCCcccc----CCCCCCCEEeeeCCCCCCccc-hhccCCCCC--ceeec
Q 013724          323 LNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSGL----CKLKSLKYLTLNGCSILQRLN-FDIWSILPL--VLTTF  394 (437)
Q Consensus       323 Ls~n~l~~l-p~~i~~L~~L~~L~L~~n~~l~~LP~~l----~~L~~L~~L~Ls~c~~l~~lP-~~l~~L~~L--~~L~~  394 (437)
                      |++|.|..+ |..+..+++|+.|+|++|. +..+|..+    ..+++|+.|+|++|.+. .+| ..+..+..+  +.|++
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l  196 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYL  196 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEEC
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcceEEe
Confidence            999999977 5689999999999999998 77888765    67999999999997654 555 566777663  66666


Q ss_pred             cc
Q 013724          395 IY  396 (437)
Q Consensus       395 ~~  396 (437)
                      .+
T Consensus       197 ~~  198 (361)
T 2xot_A          197 HN  198 (361)
T ss_dssp             CS
T ss_pred             cC
Confidence            54

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.40  E-value=3.1e-12  Score=131.70  Aligned_cols=137  Identities=17%  Similarity=0.158  Sum_probs=95.6

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEe
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFL  323 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~L  323 (437)
                      .|+.|++++|...+ .+    +..+++|++|++++|. +..++  + .+++|++|++++|..++.+ .+..+++|+.|++
T Consensus       107 ~L~~L~L~~N~l~~-l~----~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~l  177 (457)
T 3bz5_A          107 KLTYLNCDTNKLTK-LD----VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDC  177 (457)
T ss_dssp             TCCEEECCSSCCSC-CC----CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEEC
T ss_pred             cCCEEECCCCcCCe-ec----CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc-ccccCCcCCEEEC
Confidence            46667777665433 21    4567777777777776 44453  3 6777777777777666655 4677788888888


Q ss_pred             eCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccccc
Q 013724          324 NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVY  398 (437)
Q Consensus       324 s~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~  398 (437)
                      ++|.++.+|  ++.+++|+.|++++|. +..++  ++.+++|++|++++|...+ +|  ++.+++|+.|++.++.
T Consensus       178 s~n~l~~l~--l~~l~~L~~L~l~~N~-l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          178 SFNKITELD--VSQNKLLNRLNCDTNN-ITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             CSSCCCCCC--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSC
T ss_pred             CCCccceec--cccCCCCCEEECcCCc-CCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCc
Confidence            888888776  7778888888888877 55553  6777888888888776444 66  6777888888776554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.40  E-value=1.1e-12  Score=139.85  Aligned_cols=167  Identities=18%  Similarity=0.108  Sum_probs=122.7

Q ss_pred             HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEe
Q 013724          244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFL  323 (437)
Q Consensus       244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~L  323 (437)
                      ..|+.|++++|.... .+   .+..+++|+.|+|++|. +..++....+++|+.|+|++|.+ ..+|.+..+++|+.|+|
T Consensus        43 ~~L~~L~l~~n~i~~-l~---~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~L  116 (605)
T 1m9s_A           43 NSIDQIIANNSDIKS-VQ---GIQYLPNVTKLFLNGNK-LTDIKPLTNLKNLGWLFLDENKI-KDLSSLKDLKKLKSLSL  116 (605)
T ss_dssp             TTCCCCBCTTCCCCC-CT---TGGGCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSCC-CCCTTSTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC-Ch---HHccCCCCCEEEeeCCC-CCCChhhccCCCCCEEECcCCCC-CCChhhccCCCCCEEEe
Confidence            356777777776432 22   35678899999999988 66666633889999999998864 45677888999999999


Q ss_pred             eCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhc
Q 013724          324 NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVE  403 (437)
Q Consensus       324 s~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~  403 (437)
                      ++|.|..++ .+..|++|+.|+|++|. +..+ ..+..|++|+.|+|++|.+.+..|  +..+++|+.|++.+|..... 
T Consensus       117 s~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-  190 (605)
T 1m9s_A          117 EHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-  190 (605)
T ss_dssp             TTSCCCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-
T ss_pred             cCCCCCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-
Confidence            999988874 58889999999999988 6666 568889999999999887655444  88889999998877644322 


Q ss_pred             cccccCCCcccccccccCCCCC
Q 013724          404 TSAASGDDWKSAFDAAADGPVK  425 (437)
Q Consensus       404 ~~~~~~~~~~~l~~~~~s~~~~  425 (437)
                         .....++.|..+.++++.+
T Consensus       191 ---~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          191 ---RALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             ---GGGTTCTTCSEEECCSEEE
T ss_pred             ---hHHccCCCCCEEEccCCcC
Confidence               1234455666665555443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.40  E-value=1e-12  Score=141.23  Aligned_cols=150  Identities=16%  Similarity=0.099  Sum_probs=75.9

Q ss_pred             hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEe
Q 013724          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFL  323 (437)
Q Consensus       246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~L  323 (437)
                      ++.|++++|...+. + +..+..+++|++|++++|.+.+..|..+ .+++|++|+|++|.+....+. |.++++|++|+|
T Consensus        27 l~~L~Ls~n~l~~~-~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           27 ITVLNLTHNQLRRL-P-AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             CSEEECCSSCCCCC-C-GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CcEEECCCCCCCCc-C-HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            44555555543221 1 1234455566666666655333223333 556666666666543332222 555666666666


Q ss_pred             eCCCCcccC-hhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhcc--CCCCCceeecccc
Q 013724          324 NGTAIEELP-SSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIW--SILPLVLTTFIYV  397 (437)
Q Consensus       324 s~n~l~~lp-~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~--~L~~L~~L~~~~~  397 (437)
                      ++|.+..+| ..++++++|++|++++|...+..|..++++++|++|++++|...+..|..+.  .+++|+.|++.++
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n  181 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN  181 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence            666665554 3455566666666666654444444555566666666665554433333332  3355555555443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.40  E-value=1.4e-12  Score=136.45  Aligned_cols=129  Identities=18%  Similarity=0.138  Sum_probs=111.5

Q ss_pred             CceEEEeccCCCCCCCc-CccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChh-hcCCCCCCEEe
Q 013724          270 NTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHLD  345 (437)
Q Consensus       270 ~~L~~L~Ls~n~~l~~l-p~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~  345 (437)
                      ++|++|++++|. ++.+ |..+ .+++|++|+|++|.+....|. +..+++|++|+|++|.++.+|+. ++.+++|++|+
T Consensus        26 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            689999999999 5555 5556 999999999999987766665 99999999999999999988765 99999999999


Q ss_pred             ccCCCCCC-CCccccCCCCCCCEEeeeCCCCCCccc-hhccCCCCCceeecccccc
Q 013724          346 LEDCKSLK-SLPSGLCKLKSLKYLTLNGCSILQRLN-FDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       346 L~~n~~l~-~LP~~l~~L~~L~~L~Ls~c~~l~~lP-~~l~~L~~L~~L~~~~~~~  399 (437)
                      +++|...+ .+|..++++++|++|++++|..++.+| ..+..+++|+.|++.++..
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence            99998433 457789999999999999998888887 5799999999999876543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.39  E-value=3.6e-13  Score=142.43  Aligned_cols=142  Identities=20%  Similarity=0.223  Sum_probs=113.3

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCcc-C-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM  321 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~-~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L  321 (437)
                      .++.|+|++|.... .+ +..+..+++|++|+|++|. +..+|+. + .+++|++|+|++|++....+. |.++++|++|
T Consensus        53 ~~~~LdLs~N~i~~-l~-~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           53 STKNLDLSFNPLRH-LG-SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  129 (635)
T ss_dssp             TCCEEECTTSCCCE-EC-TTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred             CCCEEEeeCCCCCC-CC-HHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence            46789999886543 22 2346779999999999998 7777765 4 899999999999975544444 8999999999


Q ss_pred             EeeCCCCcccCh-hhcCCCCCCEEeccCCCCCC-CCccccCCCCCCCEEeeeCCCCCCccchhccCCCCC
Q 013724          322 FLNGTAIEELPS-SIECLYKLLHLDLEDCKSLK-SLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPL  389 (437)
Q Consensus       322 ~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n~~l~-~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L  389 (437)
                      +|++|+|+.+|+ .+++|++|+.|+|++|.... .+|..++.+++|++|++++|...+..|..+..+.++
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l  199 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  199 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred             ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence            999999998876 58999999999999998433 467888999999999999988666566666554443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.38  E-value=4.5e-13  Score=140.47  Aligned_cols=151  Identities=19%  Similarity=0.149  Sum_probs=124.3

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCc-cC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM  321 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~-~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L  321 (437)
                      .|+.|++++|...+..   ..+..+++|+.|++++|.+.+..|. .+ .+++|++|+|++|.+....|. +..+++|+.|
T Consensus       374 ~L~~L~l~~n~l~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  450 (570)
T 2z63_A          374 SLKYLDLSFNGVITMS---SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL  450 (570)
T ss_dssp             CCCEEECCSCSEEEEE---EEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred             ccCEEECCCCcccccc---ccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence            5666777776544322   1256789999999999985444442 34 899999999999988777776 8899999999


Q ss_pred             EeeCCCCc--ccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccccc
Q 013724          322 FLNGTAIE--ELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVY  398 (437)
Q Consensus       322 ~Ls~n~l~--~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~  398 (437)
                      +|++|.+.  .+|..+..+++|+.|+|++|...+..|..+..+++|++|++++|...+..|..+.++++|+.|++.++.
T Consensus       451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence            99999997  589999999999999999999555568889999999999999998766666778999999999987654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.38  E-value=1.1e-12  Score=136.54  Aligned_cols=149  Identities=16%  Similarity=0.127  Sum_probs=122.7

Q ss_pred             HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCC--CcCccC-CCCCccEEeeeCCCCCCCCCC--CCCCCCC
Q 013724          244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLK--SLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANI  318 (437)
Q Consensus       244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~--~lp~~~-~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L  318 (437)
                      ..|+.|++++|...+..+  ..+..+++|+.|++++|.+.+  .+|..+ .+++|++|+|++|.+...+|.  +..+++|
T Consensus       324 ~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L  401 (520)
T 2z7x_B          324 SPFLHLDFSNNLLTDTVF--ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL  401 (520)
T ss_dssp             CCCCEEECCSSCCCTTTT--TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred             CcccEEEeECCccChhhh--hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence            357889999987655333  346789999999999998433  344555 899999999999988776774  7889999


Q ss_pred             CEEEeeCCCCc-ccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchh-ccCCCCCceeeccc
Q 013724          319 EEMFLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFD-IWSILPLVLTTFIY  396 (437)
Q Consensus       319 ~~L~Ls~n~l~-~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~-l~~L~~L~~L~~~~  396 (437)
                      +.|+|++|.++ .+|..+.  ++|+.|+|++|. ++.+|..+..+++|++|++++|.. ..+|.. +..+++|+.|++.+
T Consensus       402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~l~~  477 (520)
T 2z7x_B          402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHT  477 (520)
T ss_dssp             CEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCcC-CccCHHHhccCCcccEEECcC
Confidence            99999999997 5666554  799999999998 779999988999999999999864 578876 89999999999866


Q ss_pred             cc
Q 013724          397 VY  398 (437)
Q Consensus       397 ~~  398 (437)
                      +.
T Consensus       478 N~  479 (520)
T 2z7x_B          478 NP  479 (520)
T ss_dssp             SC
T ss_pred             CC
Confidence            44

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.38  E-value=1.8e-12  Score=139.20  Aligned_cols=155  Identities=16%  Similarity=0.097  Sum_probs=122.6

Q ss_pred             CceEEEeccCCCCCCCcCcc-C-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEEe
Q 013724          270 NTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLD  345 (437)
Q Consensus       270 ~~L~~L~Ls~n~~l~~lp~~-~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~  345 (437)
                      ++|++|++++|. +..+|.. + .+++|++|+|++|.+.+..|. +.++++|++|+|++|.++.+|. .++.+++|++|+
T Consensus        25 ~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSC-CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCC-CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            689999999998 6666654 5 899999999999987777777 8899999999999999999987 599999999999


Q ss_pred             ccCCCCCCCCc-cccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCcccccccccCCCC
Q 013724          346 LEDCKSLKSLP-SGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPV  424 (437)
Q Consensus       346 L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~  424 (437)
                      |++|. +..+| ..++++++|++|++++|...+..|..++++++|+.|++.++...............+.++.+..+++.
T Consensus       104 L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          104 LMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             CCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred             CCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence            99998 45555 67999999999999999888888888999999999998776432111110111123456666666554


Q ss_pred             CC
Q 013724          425 KP  426 (437)
Q Consensus       425 ~~  426 (437)
                      +.
T Consensus       183 l~  184 (680)
T 1ziw_A          183 IK  184 (680)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.37  E-value=2.3e-12  Score=135.69  Aligned_cols=171  Identities=14%  Similarity=0.033  Sum_probs=98.3

Q ss_pred             hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCC--CCCC-CCCCCCCCEE
Q 013724          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLK--RLPD-ISSAANIEEM  321 (437)
Q Consensus       246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~--~lp~-l~~l~~L~~L  321 (437)
                      |+.|++++|......    +...+++|++|++++|.+.+.+|..+ .+++|+.|+|++|.+..  .+|. +..+++|+.|
T Consensus       333 L~~L~l~~n~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L  408 (562)
T 3a79_B          333 IKMLSISDTPFIHMV----CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL  408 (562)
T ss_dssp             CSEEEEESSCCCCCC----CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEE
T ss_pred             ceEEEccCCCccccc----CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEE
Confidence            566666666543211    12456677777777776554456555 67777777777765443  1222 6667777777


Q ss_pred             EeeCCCCcc-cChh-hcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724          322 FLNGTAIEE-LPSS-IECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       322 ~Ls~n~l~~-lp~~-i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~  399 (437)
                      +|++|.++. +|.. +..+++|+.|++++|...+.+|..+.  ++|++|++++|. +..+|..+..+++|+.|++.++..
T Consensus       409 ~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~l  485 (562)
T 3a79_B          409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQL  485 (562)
T ss_dssp             ECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSCC
T ss_pred             ECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCCC
Confidence            777777764 6653 55666666666666664444444332  466666666653 446666666666666666644432


Q ss_pred             hhhcccccc-CCCcccccccccCCCCCC
Q 013724          400 FFVETSAAS-GDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       400 ~~~~~~~~~-~~~~~~l~~~~~s~~~~~  426 (437)
                      .   ..+.. ...++.++.+..+++.+.
T Consensus       486 ~---~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          486 K---SVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             C---CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             C---CCCHHHHhcCCCCCEEEecCCCcC
Confidence            2   22222 344555566666665554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.37  E-value=2.6e-14  Score=140.09  Aligned_cols=151  Identities=21%  Similarity=0.296  Sum_probs=81.6

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCC--cCccC-CCCCccEEeeeCC-CCCCC-CCC-CCCCC-C
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKS--LPAGI-HLEFLKELDLSGC-SKLKR-LPD-ISSAA-N  317 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~--lp~~~-~l~~L~~L~Ls~n-~~~~~-lp~-l~~l~-~  317 (437)
                      .|+.|++++|......  +..+..+++|++|++++|..++.  ++..+ .+++|++|+|++| .+... ++. +..++ +
T Consensus       119 ~L~~L~L~~~~l~~~~--~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~  196 (336)
T 2ast_B          119 KLQNLSLEGLRLSDPI--VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  196 (336)
T ss_dssp             CCSEEECTTCBCCHHH--HHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             CCCEEeCcCcccCHHH--HHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence            4555666665432111  11234466666666666632332  34333 5666666666666 33221 333 55566 6


Q ss_pred             CCEEEeeCCC--Cc--ccChhhcCCCCCCEEeccCCCCC-CCCccccCCCCCCCEEeeeCCCCCC-ccchhccCCCCCce
Q 013724          318 IEEMFLNGTA--IE--ELPSSIECLYKLLHLDLEDCKSL-KSLPSGLCKLKSLKYLTLNGCSILQ-RLNFDIWSILPLVL  391 (437)
Q Consensus       318 L~~L~Ls~n~--l~--~lp~~i~~L~~L~~L~L~~n~~l-~~LP~~l~~L~~L~~L~Ls~c~~l~-~lP~~l~~L~~L~~  391 (437)
                      |++|+|++|.  ++  .+|..+..+++|+.|++++|..+ ...+..+..+++|++|++++|..+. .....+.++++|+.
T Consensus       197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  276 (336)
T 2ast_B          197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT  276 (336)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence            6666666663  32  45555666666666666666632 3445556666666666666664221 11124556666666


Q ss_pred             eecccc
Q 013724          392 TTFIYV  397 (437)
Q Consensus       392 L~~~~~  397 (437)
                      |++.+|
T Consensus       277 L~l~~~  282 (336)
T 2ast_B          277 LQVFGI  282 (336)
T ss_dssp             EECTTS
T ss_pred             EeccCc
Confidence            666555

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.36  E-value=4.4e-13  Score=116.04  Aligned_cols=124  Identities=25%  Similarity=0.342  Sum_probs=103.4

Q ss_pred             HhhhhhhcccCccc-CCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCE
Q 013724          244 NALKEKIISACNIF-TKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEE  320 (437)
Q Consensus       244 ~aL~~L~Ls~~~~~-~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~  320 (437)
                      ..++.|++++|... +..+  ..+..+++|+.|++++|. +..+ ..+ .+++|++|+|++|.+...+|. +..+++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLE--GLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCC--SCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             ccCeEEEccCCcCChhHHH--HHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            46788999998765 2333  356789999999999998 6666 445 899999999999987776777 667999999


Q ss_pred             EEeeCCCCcccC--hhhcCCCCCCEEeccCCCCCCCCcc----ccCCCCCCCEEeeeC
Q 013724          321 MFLNGTAIEELP--SSIECLYKLLHLDLEDCKSLKSLPS----GLCKLKSLKYLTLNG  372 (437)
Q Consensus       321 L~Ls~n~l~~lp--~~i~~L~~L~~L~L~~n~~l~~LP~----~l~~L~~L~~L~Ls~  372 (437)
                      |++++|.++.+|  ..++.+++|+.|++++|. +..+|.    .+..+++|+.|++++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence            999999999865  789999999999999998 666665    688999999999863

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.36  E-value=3e-13  Score=140.43  Aligned_cols=123  Identities=13%  Similarity=0.045  Sum_probs=54.3

Q ss_pred             ccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEe
Q 013724          268 HLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLD  345 (437)
Q Consensus       268 ~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~  345 (437)
                      .+++|+.|+|++|.+.+..|..+  .+++|+.|+|++|.+. .+|.+..+++|+.|+|++|.|+.+|+.+..+++|+.|+
T Consensus       142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~  220 (487)
T 3oja_A          142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWIS  220 (487)
T ss_dssp             GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEE
T ss_pred             CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc-cccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEE
Confidence            34444444444444322233332  3444444444444322 22333334444444444444444444444444444444


Q ss_pred             ccCCCCCCCCccccCCCCCCCEEeeeCCCCC-CccchhccCCCCCcee
Q 013724          346 LEDCKSLKSLPSGLCKLKSLKYLTLNGCSIL-QRLNFDIWSILPLVLT  392 (437)
Q Consensus       346 L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l-~~lP~~l~~L~~L~~L  392 (437)
                      |++|. +..+|..+..+++|+.|++++|+.. +.+|..+..++.|+.+
T Consensus       221 Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l  267 (487)
T 3oja_A          221 LRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV  267 (487)
T ss_dssp             CTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred             ecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence            44444 3344444444444444444444433 3344444444444433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.36  E-value=7.4e-13  Score=129.45  Aligned_cols=148  Identities=15%  Similarity=0.040  Sum_probs=116.1

Q ss_pred             HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCc-cC-CCCCccEEeeeCCCCCCCCCC-C-CCCCCCC
Q 013724          244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGCSKLKRLPD-I-SSAANIE  319 (437)
Q Consensus       244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~-~~-~l~~L~~L~Ls~n~~~~~lp~-l-~~l~~L~  319 (437)
                      ..|+.|++++|......     ...+++|+.|++++|. +..++. .+ .+++|++|+|++|.+....+. + ..+++|+
T Consensus        99 ~~L~~L~l~~n~l~~~~-----~~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  172 (317)
T 3o53_A           99 PSIETLHAANNNISRVS-----CSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE  172 (317)
T ss_dssp             TTCCEEECCSSCCSEEE-----ECCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred             CCcCEEECCCCccCCcC-----ccccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCC
Confidence            35777788777654322     2236789999999998 555544 44 789999999999876665554 4 4789999


Q ss_pred             EEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724          320 EMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       320 ~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~  399 (437)
                      +|+|++|.|+.+|.. ..+++|+.|+|++|. +..+|..+..+++|+.|++++|. +..+|..+..+++|+.|++.++..
T Consensus       173 ~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~  249 (317)
T 3o53_A          173 HLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGF  249 (317)
T ss_dssp             EEECTTSCCCEEECC-CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCC
T ss_pred             EEECCCCcCcccccc-cccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCc
Confidence            999999999988644 458999999999998 77888889999999999999976 557898999999999999876554


Q ss_pred             h
Q 013724          400 F  400 (437)
Q Consensus       400 ~  400 (437)
                      .
T Consensus       250 ~  250 (317)
T 3o53_A          250 H  250 (317)
T ss_dssp             B
T ss_pred             c
Confidence            3

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.35  E-value=6.7e-13  Score=137.78  Aligned_cols=149  Identities=13%  Similarity=-0.008  Sum_probs=117.6

Q ss_pred             HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CC-CCCCCCE
Q 013724          244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-IS-SAANIEE  320 (437)
Q Consensus       244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~-~l~~L~~  320 (437)
                      ..|+.|++++|...+..+     ..+++|+.|++++|.+.+..|..+ .+++|+.|+|++|.+.+..|. +. .+++|+.
T Consensus        99 ~~L~~L~L~~N~l~~~~~-----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~  173 (487)
T 3oja_A           99 PSIETLHAANNNISRVSC-----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH  173 (487)
T ss_dssp             TTCCEEECCSSCCCCEEE-----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred             CCcCEEECcCCcCCCCCc-----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence            457778888776544322     246789999999998554445555 889999999999987776665 54 7899999


Q ss_pred             EEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccch
Q 013724          321 MFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKF  400 (437)
Q Consensus       321 L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~  400 (437)
                      |+|++|.|+.+|. +..+++|+.|+|++|. +..+|..+..+++|+.|+|++|.. ..+|..+..+++|+.|++.++...
T Consensus       174 L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          174 LNLQYNFIYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EECTTSCCCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCC-CEECTTCCCCTTCCEEECTTCCBC
T ss_pred             EecCCCccccccc-cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcC-cccchhhccCCCCCEEEcCCCCCc
Confidence            9999999998865 4468999999999998 777887899999999999999764 468988999999999998765443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.35  E-value=3.5e-12  Score=140.96  Aligned_cols=130  Identities=22%  Similarity=0.169  Sum_probs=111.2

Q ss_pred             cCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCC-CC-CCCCCCCCEEEeeCCCCccc-ChhhcCCCCCCEE
Q 013724          269 LNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRL-PD-ISSAANIEEMFLNGTAIEEL-PSSIECLYKLLHL  344 (437)
Q Consensus       269 l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~l-p~-l~~l~~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L  344 (437)
                      .++|++|+|++|.+.+..|..+ .+++|++|+|++|.....+ |. |.++++|++|+|++|.|..+ |..++.|++|++|
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            4789999999998444445666 9999999999999777776 44 99999999999999999966 7899999999999


Q ss_pred             eccCCCCCCCCccc--cCCCCCCCEEeeeCCCCCCccc-hhccCCCCCceeeccccc
Q 013724          345 DLEDCKSLKSLPSG--LCKLKSLKYLTLNGCSILQRLN-FDIWSILPLVLTTFIYVY  398 (437)
Q Consensus       345 ~L~~n~~l~~LP~~--l~~L~~L~~L~Ls~c~~l~~lP-~~l~~L~~L~~L~~~~~~  398 (437)
                      +|++|...+.+|..  ++++++|++|+|++|...+..| ..++++++|+.|++.++.
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence            99999966666665  8999999999999998766544 679999999999987654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.34  E-value=6.9e-12  Score=129.03  Aligned_cols=144  Identities=23%  Similarity=0.265  Sum_probs=113.6

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEee
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN  324 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls  324 (437)
                      .|+.|++++|.....    ..+..+++|+.|++++|. +..++....+++|+.|++++|.+ ..++.+..+++|+.|+++
T Consensus       178 ~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~  251 (466)
T 1o6v_A          178 TLERLDISSNKVSDI----SVLAKLTNLESLIATNNQ-ISDITPLGILTNLDELSLNGNQL-KDIGTLASLTNLTDLDLA  251 (466)
T ss_dssp             TCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSC-CCCCGGGGGCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECC
T ss_pred             CCCEEECcCCcCCCC----hhhccCCCCCEEEecCCc-ccccccccccCCCCEEECCCCCc-ccchhhhcCCCCCEEECC
Confidence            577788888764332    236678999999999998 54554433789999999999864 456778889999999999


Q ss_pred             CCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724          325 GTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       325 ~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~  399 (437)
                      +|.+..+++ +..+++|+.|++++|. +..+|. +..+++|+.|++++|...+ ++. +..+++|+.|++.+|..
T Consensus       252 ~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~l  321 (466)
T 1o6v_A          252 NNQISNLAP-LSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLED-ISP-ISNLKNLTYLTLYFNNI  321 (466)
T ss_dssp             SSCCCCCGG-GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEECCSSCC
T ss_pred             CCccccchh-hhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCcccC-chh-hcCCCCCCEEECcCCcC
Confidence            999998766 8899999999999998 666666 8899999999999987544 443 77888899998877643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.34  E-value=3.2e-12  Score=134.52  Aligned_cols=148  Identities=17%  Similarity=0.106  Sum_probs=122.1

Q ss_pred             HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcC---ccC-CCCCccEEeeeCCCCCCCCCC--CCCCCC
Q 013724          244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLP---AGI-HLEFLKELDLSGCSKLKRLPD--ISSAAN  317 (437)
Q Consensus       244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp---~~~-~l~~L~~L~Ls~n~~~~~lp~--l~~l~~  317 (437)
                      ..|+.|++++|...+..+  ..+..+++|+.|++++|. +..++   ..+ .+++|+.|+|++|.+...+|.  +..+++
T Consensus       353 ~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          353 SSFTFLNFTQNVFTDSVF--QGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             CCCCEEECCSSCCCTTTT--TTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             CCceEEECCCCccccchh--hhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            367889999887655333  356789999999999998 65554   445 899999999999987775775  888999


Q ss_pred             CCEEEeeCCCCc-ccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchh-ccCCCCCceeecc
Q 013724          318 IEEMFLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFD-IWSILPLVLTTFI  395 (437)
Q Consensus       318 L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~-l~~L~~L~~L~~~  395 (437)
                      |+.|+|++|.++ .+|..+.  ++|+.|+|++|. ++.+|..+..+++|++|++++|.. ..+|.. +..+++|+.|++.
T Consensus       430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~l~  505 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLH  505 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSCC-CCCCTTSTTTCTTCCCEECC
T ss_pred             CCEEECCCCCCCcchhhhhc--CcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCCC-CCCCHHHHhcCCCCCEEEec
Confidence            999999999997 5555443  799999999997 789999988999999999999764 578887 8999999999986


Q ss_pred             ccc
Q 013724          396 YVY  398 (437)
Q Consensus       396 ~~~  398 (437)
                      ++.
T Consensus       506 ~N~  508 (562)
T 3a79_B          506 DNP  508 (562)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.34  E-value=3.6e-12  Score=126.95  Aligned_cols=128  Identities=18%  Similarity=0.117  Sum_probs=105.1

Q ss_pred             CceEEEeccCCCCCCCcCccC---CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEE
Q 013724          270 NTLVVLNLRDCKSLKSLPAGI---HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHL  344 (437)
Q Consensus       270 ~~L~~L~Ls~n~~l~~lp~~~---~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L  344 (437)
                      ..|+.|+|++|. ++.++...   .+++|+.|+|++|.+....+. |..+++|++|+|++|.|+.++. .+..+++|+.|
T Consensus        39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  117 (361)
T 2xot_A           39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL  117 (361)
T ss_dssp             TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence            468999999998 66666554   789999999999976665555 9999999999999999998876 58899999999


Q ss_pred             eccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhc----cCCCCCceeecccccc
Q 013724          345 DLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDI----WSILPLVLTTFIYVYK  399 (437)
Q Consensus       345 ~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l----~~L~~L~~L~~~~~~~  399 (437)
                      +|++|......|..+..+++|+.|+|++|. +..+|..+    ..+++|+.|++.++..
T Consensus       118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A          118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             ECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            999999544456789999999999999976 55677664    6799999999876543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.34  E-value=5.7e-12  Score=114.25  Aligned_cols=123  Identities=17%  Similarity=0.128  Sum_probs=105.9

Q ss_pred             EEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCccc-ChhhcCCCCCCEEeccCC
Q 013724          273 VVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDC  349 (437)
Q Consensus       273 ~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~L~~n  349 (437)
                      +.++++++. ++.+|..+ ..+|+.|+|++|.+....+.  +..+++|++|+|++|.|+.+ |..+..+++|+.|+|++|
T Consensus        11 ~~l~~s~~~-l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRG-LKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSC-CSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCC-cCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            688999998 78899876 23899999999976665554  88999999999999999977 678999999999999999


Q ss_pred             CCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724          350 KSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV  397 (437)
Q Consensus       350 ~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~  397 (437)
                      ...+..|..+..+++|++|+|++|...+..|..+..+++|+.|++.++
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence            944444556899999999999999888888999999999999998654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.33  E-value=1.2e-13  Score=135.40  Aligned_cols=176  Identities=12%  Similarity=0.079  Sum_probs=131.2

Q ss_pred             HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCC-cCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCE
Q 013724          244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKS-LPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEE  320 (437)
Q Consensus       244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~-lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~  320 (437)
                      ..++.+++.++...+..+.   ...+++|+.|++++|.+... +|..+ .+++|++|+|++|.+....+. +..+++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~---~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~  146 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE---HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR  146 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS---CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred             ccceEEEcCCccccccchh---hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence            4566777777765443322   34689999999999984333 66555 899999999999976655555 888999999


Q ss_pred             EEeeCC-CCc--ccChhhcCCCCCCEEeccCCCCCCC--CccccCCCC-CCCEEeeeCCC--CC-CccchhccCCCCCce
Q 013724          321 MFLNGT-AIE--ELPSSIECLYKLLHLDLEDCKSLKS--LPSGLCKLK-SLKYLTLNGCS--IL-QRLNFDIWSILPLVL  391 (437)
Q Consensus       321 L~Ls~n-~l~--~lp~~i~~L~~L~~L~L~~n~~l~~--LP~~l~~L~-~L~~L~Ls~c~--~l-~~lP~~l~~L~~L~~  391 (437)
                      |+|++| .++  .++..+..+++|+.|++++|..++.  ++..+..++ +|++|++++|.  .. +.+|..+..+++|+.
T Consensus       147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~  226 (336)
T 2ast_B          147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH  226 (336)
T ss_dssp             EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE
T ss_pred             EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCE
Confidence            999998 787  4777889999999999999933554  677788899 99999999984  33 567888889999999


Q ss_pred             eecccccchhhccccccCCCcccccccccCCC
Q 013724          392 TTFIYVYKFFVETSAASGDDWKSAFDAAADGP  423 (437)
Q Consensus       392 L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~  423 (437)
                      |++.+|........ .....++.++.+..+++
T Consensus       227 L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          227 LDLSDSVMLKNDCF-QEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             EECTTCTTCCGGGG-GGGGGCTTCCEEECTTC
T ss_pred             EeCCCCCcCCHHHH-HHHhCCCCCCEeeCCCC
Confidence            99988864322211 22334466666666665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.32  E-value=3.2e-14  Score=129.58  Aligned_cols=151  Identities=17%  Similarity=0.229  Sum_probs=119.1

Q ss_pred             HHHHHHH--hhhhhhcccCcccCCCCC----CccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCC
Q 013724          238 KLQTWRN--ALKEKIISACNIFTKTPN----PSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLP  310 (437)
Q Consensus       238 ~l~~W~~--aL~~L~Ls~~~~~~~~~~----~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp  310 (437)
                      .++.|..  .++.+++..+...+..+.    +..+..+++|++|++++|. +..+| .+ .+++|+.|+|++|.+. .+|
T Consensus        10 ~~~~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~l~-~l~   86 (198)
T 1ds9_A           10 AIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLIK-KIE   86 (198)
T ss_dssp             HHHHHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEEEC-SCS
T ss_pred             HHHHHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCCcc-ccc
Confidence            3455543  455567776665544331    1246678999999999998 66788 55 8999999999998654 677


Q ss_pred             C-CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCcc--ccCCCCCCCEEeeeCCCCCCccchh-----
Q 013724          311 D-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPS--GLCKLKSLKYLTLNGCSILQRLNFD-----  382 (437)
Q Consensus       311 ~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~--~l~~L~~L~~L~Ls~c~~l~~lP~~-----  382 (437)
                      . +..+++|+.|+|++|.|+.+| .+..+++|+.|++++|. +..+|.  .+..+++|++|++++|+..+.+|..     
T Consensus        87 ~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~  164 (198)
T 1ds9_A           87 NLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE  164 (198)
T ss_dssp             SHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHH
T ss_pred             chhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHH
Confidence            7 666799999999999999987 68899999999999998 777664  6899999999999999876665542     


Q ss_pred             -----ccCCCCCceee
Q 013724          383 -----IWSILPLVLTT  393 (437)
Q Consensus       383 -----l~~L~~L~~L~  393 (437)
                           +..+++|+.|+
T Consensus       165 ~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          165 YRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHHHCSSCSEEC
T ss_pred             HHHHHHHhCCCcEEEC
Confidence                 78889999887

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.32  E-value=2.8e-12  Score=135.67  Aligned_cols=98  Identities=27%  Similarity=0.306  Sum_probs=46.0

Q ss_pred             eEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCC
Q 013724          272 LVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDC  349 (437)
Q Consensus       272 L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n  349 (437)
                      |+.|+|++|. ++.+|. + .+++|+.|+|++|.+. .+|. ++.+++|+.|+|++|.|+.+| .++.|++|+.|+|++|
T Consensus       443 L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          443 VRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             CSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred             ceEEEecCCC-CCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence            4445555544 333443 3 4445555555544333 3333 444555555555555554444 4444555555555554


Q ss_pred             CCCCCC--ccccCCCCCCCEEeeeCCC
Q 013724          350 KSLKSL--PSGLCKLKSLKYLTLNGCS  374 (437)
Q Consensus       350 ~~l~~L--P~~l~~L~~L~~L~Ls~c~  374 (437)
                      . +..+  |..++.+++|+.|+|++|+
T Consensus       519 ~-l~~~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          519 R-LQQSAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             C-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             C-CCCCCCcHHHhcCCCCCEEEecCCc
Confidence            4 2222  4444455555555555444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.31  E-value=1.2e-11  Score=112.36  Aligned_cols=105  Identities=17%  Similarity=0.278  Sum_probs=73.6

Q ss_pred             CceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEEec
Q 013724          270 NTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDL  346 (437)
Q Consensus       270 ~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L  346 (437)
                      ++|+.|++++|. +..+|..+ .+++|+.|+|++|.+....+. |..+++|++|+|++|.|+.+++ .+..+++|+.|+|
T Consensus        31 ~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            467777777776 56677655 777777777777765554444 7777777777777777776654 5777777777777


Q ss_pred             cCCCCCCCCcc-ccCCCCCCCEEeeeCCCCC
Q 013724          347 EDCKSLKSLPS-GLCKLKSLKYLTLNGCSIL  376 (437)
Q Consensus       347 ~~n~~l~~LP~-~l~~L~~L~~L~Ls~c~~l  376 (437)
                      ++|. +..+|. .+..+++|+.|+|++|+..
T Consensus       110 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          110 HGND-ISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence            7777 555554 3667777777777777643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.31  E-value=1.4e-12  Score=116.38  Aligned_cols=125  Identities=15%  Similarity=0.202  Sum_probs=102.4

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMF  322 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~  322 (437)
                      .|+.|++++|.... .  +.+....++|++|++++|. ++.+ ..+ .+++|++|+|++|.+....+. +..+++|++|+
T Consensus        20 ~L~~L~l~~n~l~~-i--~~~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           20 RDRELDLRGYKIPV-I--ENLGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             SCEEEECTTSCCCS-C--CCGGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CceEEEeeCCCCch-h--HHhhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            46778888886553 2  3344444599999999998 6666 445 899999999999976544445 58899999999


Q ss_pred             eeCCCCcccCh--hhcCCCCCCEEeccCCCCCCCCccc----cCCCCCCCEEeeeCCCC
Q 013724          323 LNGTAIEELPS--SIECLYKLLHLDLEDCKSLKSLPSG----LCKLKSLKYLTLNGCSI  375 (437)
Q Consensus       323 Ls~n~l~~lp~--~i~~L~~L~~L~L~~n~~l~~LP~~----l~~L~~L~~L~Ls~c~~  375 (437)
                      |++|.|..+|.  .+..+++|+.|++++|. +..+|..    +..+++|+.|++++|..
T Consensus        95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           95 LTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            99999999987  89999999999999999 6788875    89999999999999763

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.31  E-value=2.4e-11  Score=108.23  Aligned_cols=110  Identities=26%  Similarity=0.365  Sum_probs=81.4

Q ss_pred             cCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChh-hcCCCCCCEE
Q 013724          269 LNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHL  344 (437)
Q Consensus       269 l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L  344 (437)
                      .++|+.|++++|. +..+|...  .+++|++|+|++|.+....+. +..+++|+.|+|++|.|+.+|.. +..+++|+.|
T Consensus        27 ~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L  105 (177)
T 2o6r_A           27 PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL  105 (177)
T ss_dssp             CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEE
Confidence            3678888888887 55565543  778888888888765544444 67888888888888888877654 5778888888


Q ss_pred             eccCCCCCCCCccc-cCCCCCCCEEeeeCCCCCCccc
Q 013724          345 DLEDCKSLKSLPSG-LCKLKSLKYLTLNGCSILQRLN  380 (437)
Q Consensus       345 ~L~~n~~l~~LP~~-l~~L~~L~~L~Ls~c~~l~~lP  380 (437)
                      +|++|. ++.+|.. +..+++|++|++++|+..+..|
T Consensus       106 ~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          106 ALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             ECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ECcCCc-ceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            888887 5666655 4778888888888887666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.29  E-value=2.3e-11  Score=110.42  Aligned_cols=120  Identities=27%  Similarity=0.301  Sum_probs=100.9

Q ss_pred             EEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEEeccCCC
Q 013724          273 VVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCK  350 (437)
Q Consensus       273 ~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n~  350 (437)
                      +.++++++. ++.+|..+ .++|+.|+|++|.+. .+|. +..+++|+.|+|++|.|+.++. .+..+++|+.|+|++|.
T Consensus        13 ~~l~~~~~~-l~~ip~~~-~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKG-LKVLPKGI-PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSC-CSSCCSCC-CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCC-CCcCCCCC-CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            578899988 88898765 468999999998754 6665 9999999999999999998864 68999999999999999


Q ss_pred             CCCCCc-cccCCCCCCCEEeeeCCCCCCccch-hccCCCCCceeecccc
Q 013724          351 SLKSLP-SGLCKLKSLKYLTLNGCSILQRLNF-DIWSILPLVLTTFIYV  397 (437)
Q Consensus       351 ~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP~-~l~~L~~L~~L~~~~~  397 (437)
                       +..+| ..+..+++|++|+|++|.+. .+|. .+..+++|+.|++.+.
T Consensus        90 -l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           90 -LRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             -CCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSS
T ss_pred             -cCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCC
Confidence             55554 57899999999999998754 5654 5889999999998653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.28  E-value=1.8e-11  Score=129.40  Aligned_cols=136  Identities=18%  Similarity=0.198  Sum_probs=90.6

Q ss_pred             HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEe
Q 013724          244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFL  323 (437)
Q Consensus       244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~L  323 (437)
                      ..|+.|++++|...+ .+.   +..  +|+.|+|++|. ++.+|.  .+++|+.|+|++|.+.. +|.  .+++|+.|+|
T Consensus       100 ~~L~~L~Ls~N~l~~-ip~---l~~--~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~L  167 (571)
T 3cvr_A          100 ASLEYLDACDNRLST-LPE---LPA--SLKHLDVDNNQ-LTMLPE--LPALLEYINADNNQLTM-LPE--LPTSLEVLSV  167 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCC---CCT--TCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCSC-CCC--CCTTCCEEEC
T ss_pred             CCCCEEEccCCCCCC-cch---hhc--CCCEEECCCCc-CCCCCC--cCccccEEeCCCCccCc-CCC--cCCCcCEEEC
Confidence            456667777765443 222   222  77777777776 555666  56777777877776443 555  5677888888


Q ss_pred             eCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCC-------CEEeeeCCCCCCccchhccCCCCCceeeccc
Q 013724          324 NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSL-------KYLTLNGCSILQRLNFDIWSILPLVLTTFIY  396 (437)
Q Consensus       324 s~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L-------~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~  396 (437)
                      ++|.|+.+|. +.  ++|+.|+|++|. ++.+|. +..  +|       +.|+|++|. +..+|..+..+++|+.|++.+
T Consensus       168 s~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~  239 (571)
T 3cvr_A          168 RNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA-VPV--RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILED  239 (571)
T ss_dssp             CSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC-CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCS
T ss_pred             CCCCCCCcch-hh--CCCCEEECcCCC-CCchhh-HHH--hhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeC
Confidence            8888777777 55  778888888876 667777 544  56       888887765 456787777788888887765


Q ss_pred             ccc
Q 013724          397 VYK  399 (437)
Q Consensus       397 ~~~  399 (437)
                      +..
T Consensus       240 N~l  242 (571)
T 3cvr_A          240 NPL  242 (571)
T ss_dssp             SSC
T ss_pred             CcC
Confidence            543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.28  E-value=3.6e-12  Score=138.63  Aligned_cols=121  Identities=22%  Similarity=0.259  Sum_probs=96.7

Q ss_pred             EeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCC
Q 013724          275 LNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSL  352 (437)
Q Consensus       275 L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l  352 (437)
                      +++..|. +...|..+ .++.|+.|+|++|.+. .+|. +..+++|++|+|++|.|+.+|..|+.|++|++|+|++|. +
T Consensus       206 ~~~~~n~-~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l  282 (727)
T 4b8c_D          206 DDDIENR-MVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-L  282 (727)
T ss_dssp             -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-C
T ss_pred             ccccccc-eecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-C
Confidence            3444444 33445555 8999999999998765 6665 779999999999999999999999999999999999999 6


Q ss_pred             CCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724          353 KSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       353 ~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~  399 (437)
                      ..+|..++.|++|++|+|++|. ++.+|..|++|++|+.|++.++..
T Consensus       283 ~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          283 TSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             SSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCC
T ss_pred             CccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCcc
Confidence            6999999999999999999985 579999999999999999976543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.27  E-value=2.5e-11  Score=108.08  Aligned_cols=123  Identities=23%  Similarity=0.222  Sum_probs=101.0

Q ss_pred             eEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChh-hcCCCCCCEEeccCC
Q 013724          272 LVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHLDLEDC  349 (437)
Q Consensus       272 L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~L~~n  349 (437)
                      .+.++++++. +..+|..+ .++|+.|+|++|.+....+. +..+++|++|+|++|.|+.+|.. +..+++|+.|+|++|
T Consensus         9 ~~~l~~~~~~-l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKG-LTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSC-CSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCC-CccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            4678888887 77888654 47999999999886654444 78999999999999999988765 689999999999999


Q ss_pred             CCCCCCcc-ccCCCCCCCEEeeeCCCCCCccchh-ccCCCCCceeeccccc
Q 013724          350 KSLKSLPS-GLCKLKSLKYLTLNGCSILQRLNFD-IWSILPLVLTTFIYVY  398 (437)
Q Consensus       350 ~~l~~LP~-~l~~L~~L~~L~Ls~c~~l~~lP~~-l~~L~~L~~L~~~~~~  398 (437)
                      . ++.+|. .+..+++|++|++++|.. ..+|.. +..+++|+.|++.++.
T Consensus        87 ~-l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           87 K-LQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             C-CCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSC
T ss_pred             C-ccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCcccCEEEecCCC
Confidence            8 666665 478999999999999865 466654 6889999999987654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.27  E-value=2.4e-11  Score=108.57  Aligned_cols=102  Identities=29%  Similarity=0.444  Sum_probs=89.0

Q ss_pred             eEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChh-hcCCCCCCEEeccCC
Q 013724          272 LVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHLDLEDC  349 (437)
Q Consensus       272 L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~L~~n  349 (437)
                      -+.+++++|. ++.+|..+. ++|+.|+|++|.+.+..|. +.++++|++|+|++|+|+.+|.. +..+++|+.|+|++|
T Consensus        14 ~~~l~~~~n~-l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           14 QTLVNCQNIR-LASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSEEECCSSC-CSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEeCCCC-CCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            3689999998 788998763 8999999999987776676 89999999999999999999876 589999999999999


Q ss_pred             CCCCCCccc-cCCCCCCCEEeeeCCCCC
Q 013724          350 KSLKSLPSG-LCKLKSLKYLTLNGCSIL  376 (437)
Q Consensus       350 ~~l~~LP~~-l~~L~~L~~L~Ls~c~~l  376 (437)
                      . +..+|.. +..+++|++|+|++|+..
T Consensus        92 ~-l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 H-LKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             C-CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             c-cceeCHHHhccccCCCEEEeCCCCcc
Confidence            8 7777765 899999999999998754

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.26  E-value=2e-11  Score=128.91  Aligned_cols=128  Identities=16%  Similarity=0.256  Sum_probs=92.4

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEee
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN  324 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls  324 (437)
                      .|+.|++++|...+ .+.     .+++|+.|+|++|. ++.+|.  .+++|+.|+|++|.+.. +|.+.  ++|+.|+|+
T Consensus       121 ~L~~L~Ls~N~l~~-lp~-----~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~L~~-lp~l~--~~L~~L~Ls  188 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM-LPE-----LPALLEYINADNNQ-LTMLPE--LPTSLEVLSVRNNQLTF-LPELP--ESLEALDVS  188 (571)
T ss_dssp             TCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCSC-CCCCC--TTCCEEECC
T ss_pred             CCCEEECCCCcCCC-CCC-----cCccccEEeCCCCc-cCcCCC--cCCCcCEEECCCCCCCC-cchhh--CCCCEEECc
Confidence            67778888776544 222     46788888888887 555776  56788888888876544 66644  788888888


Q ss_pred             CCCCcccChhhcCCCCC-------CEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCC
Q 013724          325 GTAIEELPSSIECLYKL-------LHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILP  388 (437)
Q Consensus       325 ~n~l~~lp~~i~~L~~L-------~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~  388 (437)
                      +|.|+.+|. +..  +|       +.|+|++|. ++.+|..+..+++|+.|+|++|+..+.+|..+..+..
T Consensus       189 ~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          189 TNLLESLPA-VPV--RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             SSCCSSCCC-CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             CCCCCchhh-HHH--hhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            888888877 544  66       888888877 6778887777888888888888887888877766543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.22  E-value=7.1e-11  Score=104.94  Aligned_cols=105  Identities=25%  Similarity=0.283  Sum_probs=89.8

Q ss_pred             ceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChh-hcCCCCCCEEeccC
Q 013724          271 TLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHLDLED  348 (437)
Q Consensus       271 ~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~L~~  348 (437)
                      ..+.|++++|. ++.+|..+ .++|++|+|++|.+.+..|. |..+++|++|+|++|+|+.+|+. +..+++|++|+|++
T Consensus        10 ~~~~l~~s~n~-l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKS-LASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSC-CSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCC-cCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            35689999998 78898776 48899999999987776676 89999999999999999998875 58999999999999


Q ss_pred             CCCCCCCcc-ccCCCCCCCEEeeeCCCCCCc
Q 013724          349 CKSLKSLPS-GLCKLKSLKYLTLNGCSILQR  378 (437)
Q Consensus       349 n~~l~~LP~-~l~~L~~L~~L~Ls~c~~l~~  378 (437)
                      |. +..+|. .+..+++|++|+|++|+....
T Consensus        88 N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           88 NQ-LKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SC-CCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             Cc-cCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            98 666765 589999999999999886543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.21  E-value=2.4e-11  Score=128.39  Aligned_cols=119  Identities=15%  Similarity=0.194  Sum_probs=100.0

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEe
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFL  323 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~L  323 (437)
                      .|+.|++++|...+ .  |. +..+++|+.|+|++|. +..+|..+ .+++|+.|+|++|.+.+ +|.++.+++|+.|+|
T Consensus       442 ~L~~L~Ls~n~l~~-l--p~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-L--CH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCSS-C--CC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCCC-C--cC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEEC
Confidence            46678888886544 3  33 7789999999999998 66999988 99999999999987655 788999999999999


Q ss_pred             eCCCCccc--ChhhcCCCCCCEEeccCCCCCCCCcccc----CCCCCCCEEee
Q 013724          324 NGTAIEEL--PSSIECLYKLLHLDLEDCKSLKSLPSGL----CKLKSLKYLTL  370 (437)
Q Consensus       324 s~n~l~~l--p~~i~~L~~L~~L~L~~n~~l~~LP~~l----~~L~~L~~L~L  370 (437)
                      ++|.|+.+  |..++.|++|+.|+|++|. +..+|..+    ..+++|+.|++
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence            99999987  8999999999999999999 66665543    34788888864

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.18  E-value=2.6e-10  Score=121.70  Aligned_cols=91  Identities=21%  Similarity=0.233  Sum_probs=47.5

Q ss_pred             hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeC
Q 013724          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNG  325 (437)
Q Consensus       246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~  325 (437)
                      ++.+++++++.. ..+.  .+.  ++|+.|+|++|. ++.+|.  .+++|++|+|++|.+ ..+|.  .+++|++|+|++
T Consensus        42 l~~L~ls~n~L~-~lp~--~l~--~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~l-~~lp~--~l~~L~~L~Ls~  110 (622)
T 3g06_A           42 NAVLNVGESGLT-TLPD--CLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQL-TSLPV--LPPGLLELSIFS  110 (622)
T ss_dssp             CCEEECCSSCCS-CCCS--CCC--TTCSEEEECSCC-CSCCCC--CCTTCCEEEECSCCC-SCCCC--CCTTCCEEEECS
T ss_pred             CcEEEecCCCcC-ccCh--hhC--CCCcEEEecCCC-CCCCCC--cCCCCCEEEcCCCcC-CcCCC--CCCCCCEEECcC
Confidence            455666665443 2221  111  566666666665 555555  456666666666643 33444  455566666666


Q ss_pred             CCCcccChhhcCCCCCCEEeccCCC
Q 013724          326 TAIEELPSSIECLYKLLHLDLEDCK  350 (437)
Q Consensus       326 n~l~~lp~~i~~L~~L~~L~L~~n~  350 (437)
                      |.|+.+|.   .+++|+.|++++|+
T Consensus       111 N~l~~l~~---~l~~L~~L~L~~N~  132 (622)
T 3g06_A          111 NPLTHLPA---LPSGLCKLWIFGNQ  132 (622)
T ss_dssp             CCCCCCCC---CCTTCCEEECCSSC
T ss_pred             CcCCCCCC---CCCCcCEEECCCCC
Confidence            65555544   33444444444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.18  E-value=2e-10  Score=118.14  Aligned_cols=136  Identities=17%  Similarity=0.156  Sum_probs=81.5

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEee
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN  324 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls  324 (437)
                      .|+.|++++|...+ .+   .+..+++|++|++++|. +..+|..  ..+|++|++++|.+.+ +|.+..+++|+.|+++
T Consensus       132 ~L~~L~L~~n~l~~-lp---~~~~l~~L~~L~l~~N~-l~~lp~~--~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LP---ELQNSSFLKIIDVDNNS-LKKLPDL--PPSLEFIAAGNNQLEE-LPELQNLPFLTAIYAD  203 (454)
T ss_dssp             TCCEEECCSSCCSS-CC---CCTTCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECC
T ss_pred             CCCEEECcCCCCCC-Cc---ccCCCCCCCEEECCCCc-CcccCCC--cccccEEECcCCcCCc-CccccCCCCCCEEECC
Confidence            56666666665443 22   25566777777777776 4455543  3467777777765433 5667777777777777


Q ss_pred             CCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724          325 GTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV  397 (437)
Q Consensus       325 ~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~  397 (437)
                      +|.++.+|...   ++|+.|++++|. +..+|. ++.+++|++|++++|.. ..+|..   +.+|+.|++.+|
T Consensus       204 ~N~l~~l~~~~---~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~l~~N~l-~~l~~~---~~~L~~L~l~~N  267 (454)
T 1jl5_A          204 NNSLKKLPDLP---LSLESIVAGNNI-LEELPE-LQNLPFLTTIYADNNLL-KTLPDL---PPSLEALNVRDN  267 (454)
T ss_dssp             SSCCSSCCCCC---TTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCSSCC-SSCCSC---CTTCCEEECCSS
T ss_pred             CCcCCcCCCCc---CcccEEECcCCc-CCcccc-cCCCCCCCEEECCCCcC-Cccccc---ccccCEEECCCC
Confidence            77776665432   466667776665 456663 66677777777766543 335532   245555554433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.17  E-value=2.1e-10  Score=117.93  Aligned_cols=138  Identities=22%  Similarity=0.294  Sum_probs=105.8

Q ss_pred             HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEE
Q 013724          244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMF  322 (437)
Q Consensus       244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~  322 (437)
                      ..|+.|++++|...+...   .   .++|++|++++|. +..+|. + .+++|++|++++|.+. .+|..  +.+|++|+
T Consensus       111 ~~L~~L~l~~n~l~~l~~---~---~~~L~~L~L~~n~-l~~lp~-~~~l~~L~~L~l~~N~l~-~lp~~--~~~L~~L~  179 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKALSD---L---PPLLEYLGVSNNQ-LEKLPE-LQNSSFLKIIDVDNNSLK-KLPDL--PPSLEFIA  179 (454)
T ss_dssp             TTCCEEECCSSCCSCCCS---C---CTTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCSSCCS-CCCCC--CTTCCEEE
T ss_pred             CCCcEEECCCCccCcccC---C---CCCCCEEECcCCC-CCCCcc-cCCCCCCCEEECCCCcCc-ccCCC--cccccEEE
Confidence            457777887765443111   1   2688999999998 556884 5 8899999999998654 46653  35899999


Q ss_pred             eeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724          323 LNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       323 Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~  399 (437)
                      +++|.++.+| .++.+++|+.|++++|. +..+|...   ++|++|++++|.. ..+| .++.+++|+.|++.++..
T Consensus       180 L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~---~~L~~L~l~~n~l-~~lp-~~~~l~~L~~L~l~~N~l  249 (454)
T 1jl5_A          180 AGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDLP---LSLESIVAGNNIL-EELP-ELQNLPFLTTIYADNNLL  249 (454)
T ss_dssp             CCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCCC---TTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSSCC
T ss_pred             CcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCCc---CcccEEECcCCcC-Cccc-ccCCCCCCCEEECCCCcC
Confidence            9999999887 68999999999999988 66677643   5899999999864 4888 489999999999877643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.15  E-value=2e-10  Score=122.60  Aligned_cols=117  Identities=21%  Similarity=0.192  Sum_probs=83.6

Q ss_pred             cCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccC
Q 013724          269 LNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLED  348 (437)
Q Consensus       269 l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~  348 (437)
                      +++|+.|++++|. +..+|..  +++|+.|++++|.+ ..+|.  .+++|+.|+|++|.|+.+|   ..+++|+.|+|++
T Consensus       180 ~~~L~~L~Ls~N~-l~~l~~~--~~~L~~L~L~~N~l-~~l~~--~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~  250 (622)
T 3g06_A          180 PSGLQELSVSDNQ-LASLPTL--PSELYKLWAYNNRL-TSLPA--LPSGLKELIVSGNRLTSLP---VLPSELKELMVSG  250 (622)
T ss_dssp             CTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSSCC-SSCCC--CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCS
T ss_pred             CCCCcEEECCCCC-CCCCCCc--cchhhEEECcCCcc-cccCC--CCCCCCEEEccCCccCcCC---CCCCcCcEEECCC
Confidence            3566666666666 4445542  35666666666543 34443  2477888888888888887   4567888888888


Q ss_pred             CCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccc
Q 013724          349 CKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       349 n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~  399 (437)
                      |. ++.+|.   .+++|+.|+|++|.+ ..+|..+.++++|+.|++.++..
T Consensus       251 N~-L~~lp~---~~~~L~~L~Ls~N~L-~~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          251 NR-LTSLPM---LPSGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             SC-CSCCCC---CCTTCCEEECCSSCC-CSCCGGGGGSCTTCEEECCSCCC
T ss_pred             CC-CCcCCc---ccccCcEEeCCCCCC-CcCCHHHhhccccCEEEecCCCC
Confidence            87 777877   567888999988754 48888888889999888876543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.13  E-value=5.7e-13  Score=121.27  Aligned_cols=112  Identities=20%  Similarity=0.150  Sum_probs=95.0

Q ss_pred             CCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCC
Q 013724          284 KSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKL  362 (437)
Q Consensus       284 ~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L  362 (437)
                      ..+|..+ .+++|++|+|++|.+.. +|.+..+++|++|+|++|.|+.+|..+..+++|+.|++++|. ++.+| .+..+
T Consensus        38 ~~l~~~~~~l~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l  114 (198)
T 1ds9_A           38 EKMDATLSTLKACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKL  114 (198)
T ss_dssp             CCCHHHHHHTTTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHH
T ss_pred             hhhhHHHhcCCCCCEEECCCCCCcc-ccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccC
Confidence            3444466 89999999999987554 778888999999999999999999988889999999999998 77787 68899


Q ss_pred             CCCCEEeeeCCCCCCccc--hhccCCCCCceeecccccc
Q 013724          363 KSLKYLTLNGCSILQRLN--FDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       363 ~~L~~L~Ls~c~~l~~lP--~~l~~L~~L~~L~~~~~~~  399 (437)
                      ++|++|++++|.. ..+|  ..+..+++|+.|++.++..
T Consensus       115 ~~L~~L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          115 VNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHSSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             CCCCEEECCCCcC-CchhHHHHHhcCCCCCEEEecCCcc
Confidence            9999999999864 4554  3789999999999877644

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.13  E-value=2.4e-12  Score=129.01  Aligned_cols=183  Identities=16%  Similarity=0.085  Sum_probs=125.8

Q ss_pred             HhhhhhhcccCcccCCC--CCCccccccCceEEEeccCCCCCCC----cCccC-CC---------CCccEEeeeCCCCC-
Q 013724          244 NALKEKIISACNIFTKT--PNPSFSQHLNTLVVLNLRDCKSLKS----LPAGI-HL---------EFLKELDLSGCSKL-  306 (437)
Q Consensus       244 ~aL~~L~Ls~~~~~~~~--~~~~~~~~l~~L~~L~Ls~n~~l~~----lp~~~-~l---------~~L~~L~Ls~n~~~-  306 (437)
                      ..|+.|+|++|......  ..+..+..+++|++|+|++|.+...    ++..+ .+         ++|++|+|++|.+. 
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~  173 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  173 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence            35677888887654321  1122456788999999999984222    22222 33         89999999998765 


Q ss_pred             CCCC---C-CCCCCCCCEEEeeCCCCc------ccChhhcCCCCCCEEeccCCCCC----CCCccccCCCCCCCEEeeeC
Q 013724          307 KRLP---D-ISSAANIEEMFLNGTAIE------ELPSSIECLYKLLHLDLEDCKSL----KSLPSGLCKLKSLKYLTLNG  372 (437)
Q Consensus       307 ~~lp---~-l~~l~~L~~L~Ls~n~l~------~lp~~i~~L~~L~~L~L~~n~~l----~~LP~~l~~L~~L~~L~Ls~  372 (437)
                      ..+|   . +..+++|+.|+|++|.|.      -+|..+..+++|+.|+|++|...    ..+|..+..+++|++|+|++
T Consensus       174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~  253 (386)
T 2ca6_A          174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  253 (386)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence            3444   2 567889999999999988      23337888999999999999842    66888888999999999999


Q ss_pred             CCCCCc----cchhc--cCCCCCceeecccccchhhc--cccccC-CCcccccccccCCCCCC
Q 013724          373 CSILQR----LNFDI--WSILPLVLTTFIYVYKFFVE--TSAASG-DDWKSAFDAAADGPVKP  426 (437)
Q Consensus       373 c~~l~~----lP~~l--~~L~~L~~L~~~~~~~~~~~--~~~~~~-~~~~~l~~~~~s~~~~~  426 (437)
                      |.....    +|..+  +.+++|+.|++.+|......  ..+... ..++.++.+..+++.+.
T Consensus       254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            886654    56777  44899999998777544311  112222 23566777777776655

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.12  E-value=1.9e-12  Score=129.82  Aligned_cols=157  Identities=13%  Similarity=0.067  Sum_probs=118.5

Q ss_pred             HhhhhhhcccCcccCCCC--CCcccccc---------CceEEEeccCCCCC-CCcC---ccC-CCCCccEEeeeCCCCCC
Q 013724          244 NALKEKIISACNIFTKTP--NPSFSQHL---------NTLVVLNLRDCKSL-KSLP---AGI-HLEFLKELDLSGCSKLK  307 (437)
Q Consensus       244 ~aL~~L~Ls~~~~~~~~~--~~~~~~~l---------~~L~~L~Ls~n~~l-~~lp---~~~-~l~~L~~L~Ls~n~~~~  307 (437)
                      ..|+.|+|++|.......  ....+..+         ++|++|++++|.+. ..++   ..+ .+++|+.|+|++|.+..
T Consensus       122 ~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~  201 (386)
T 2ca6_A          122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP  201 (386)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCH
T ss_pred             CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCH
Confidence            367889998886532111  01112233         89999999999843 3444   233 78899999999997552


Q ss_pred             -----CCC-CCCCCCCCCEEEeeCCCC-----cccChhhcCCCCCCEEeccCCCCCCC----Ccccc--CCCCCCCEEee
Q 013724          308 -----RLP-DISSAANIEEMFLNGTAI-----EELPSSIECLYKLLHLDLEDCKSLKS----LPSGL--CKLKSLKYLTL  370 (437)
Q Consensus       308 -----~lp-~l~~l~~L~~L~Ls~n~l-----~~lp~~i~~L~~L~~L~L~~n~~l~~----LP~~l--~~L~~L~~L~L  370 (437)
                           .+| .+..+++|+.|+|++|.|     ..+|..+..+++|+.|+|++|.....    +|..+  +.+++|++|+|
T Consensus       202 ~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L  281 (386)
T 2ca6_A          202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL  281 (386)
T ss_dssp             HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEEC
T ss_pred             hHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEEC
Confidence                 355 588899999999999999     56788899999999999999984333    56666  45999999999


Q ss_pred             eCCCCCC----ccchhc-cCCCCCceeecccccch
Q 013724          371 NGCSILQ----RLNFDI-WSILPLVLTTFIYVYKF  400 (437)
Q Consensus       371 s~c~~l~----~lP~~l-~~L~~L~~L~~~~~~~~  400 (437)
                      ++|....    .+|..+ .++++|+.|++.+|...
T Consensus       282 ~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          282 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             CSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            9988666    489888 67899999998776543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.12  E-value=2.1e-10  Score=113.58  Aligned_cols=150  Identities=17%  Similarity=0.172  Sum_probs=86.1

Q ss_pred             hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEE-eeeCCCCCCCCCC-CCCCCCCCEE
Q 013724          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKEL-DLSGCSKLKRLPD-ISSAANIEEM  321 (437)
Q Consensus       246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L-~Ls~n~~~~~lp~-l~~l~~L~~L  321 (437)
                      +++|+|++|... .++. ..+..+++|++|+|++|.+++.+|...  .+++|+.+ .+.+|++....|. |..+++|++|
T Consensus        32 l~~L~Ls~N~i~-~i~~-~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           32 AIELRFVLTKLR-VIQK-GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             CSEEEEESCCCS-EECT-TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCEEEccCCcCC-CcCH-HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            445566555432 2221 223456666666666666445455433  45554443 3333332222233 5556666666


Q ss_pred             EeeCCCCcccCh--------------------------hhcCC-CCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCC
Q 013724          322 FLNGTAIEELPS--------------------------SIECL-YKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCS  374 (437)
Q Consensus       322 ~Ls~n~l~~lp~--------------------------~i~~L-~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~  374 (437)
                      ++++|.|..+|.                          .+..+ ..|+.|+|++|. ++.+|..+...++|+.|++.+|+
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~~~n  188 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNN  188 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSSTTEEEEEEECTTCT
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhccccchhHHhhccCC
Confidence            666555554432                          12223 356777777777 67777766667778888888777


Q ss_pred             CCCccchh-ccCCCCCceeeccccc
Q 013724          375 ILQRLNFD-IWSILPLVLTTFIYVY  398 (437)
Q Consensus       375 ~l~~lP~~-l~~L~~L~~L~~~~~~  398 (437)
                      .++.+|.. +..+++|+.|++.++.
T Consensus       189 ~l~~i~~~~f~~l~~L~~LdLs~N~  213 (350)
T 4ay9_X          189 NLEELPNDVFHGASGPVILDISRTR  213 (350)
T ss_dssp             TCCCCCTTTTTTEECCSEEECTTSC
T ss_pred             cccCCCHHHhccCcccchhhcCCCC
Confidence            78888754 6788888888876554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.00  E-value=3.5e-10  Score=111.94  Aligned_cols=106  Identities=22%  Similarity=0.242  Sum_probs=48.1

Q ss_pred             cccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC--CCCCC-CCCEEEeeCCCCcccChhhcCCCCC
Q 013724          267 QHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAA-NIEEMFLNGTAIEELPSSIECLYKL  341 (437)
Q Consensus       267 ~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~--l~~l~-~L~~L~Ls~n~l~~lp~~i~~L~~L  341 (437)
                      ..+++|++|++++|. +..+|...  ....+..|++.++..+..+|.  +..+. .|+.|+|++|+|+.+|..+....+|
T Consensus       101 ~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L  179 (350)
T 4ay9_X          101 QNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL  179 (350)
T ss_dssp             CCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEE
T ss_pred             hhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccch
Confidence            344555555555554 33333322  333344444444333333332  33322 3455555555555555544444455


Q ss_pred             CEEeccCCCCCCCCccc-cCCCCCCCEEeeeCC
Q 013724          342 LHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNGC  373 (437)
Q Consensus       342 ~~L~L~~n~~l~~LP~~-l~~L~~L~~L~Ls~c  373 (437)
                      +.|++.+|+.++.+|.. +..+++|++|+|++|
T Consensus       180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N  212 (350)
T 4ay9_X          180 DELNLSDNNNLEELPNDVFHGASGPVILDISRT  212 (350)
T ss_dssp             EEEECTTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred             hHHhhccCCcccCCCHHHhccCcccchhhcCCC
Confidence            55555444445555432 345555555555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.96  E-value=3.6e-09  Score=93.83  Aligned_cols=100  Identities=27%  Similarity=0.358  Sum_probs=82.1

Q ss_pred             CccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCccc-ChhhcCCCCCCEEeccCCCCCCCCccc-cCCCCCCCEEee
Q 013724          294 FLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTL  370 (437)
Q Consensus       294 ~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~L~~n~~l~~LP~~-l~~L~~L~~L~L  370 (437)
                      ..+.|++++|. +..+|. +  .++|++|+|++|.|+.+ |..+..+++|+.|+|++|. +..+|.. +..+++|++|+|
T Consensus        10 ~~~~l~~s~n~-l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKS-LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCC-cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEEC
Confidence            35789999975 555775 5  38899999999999988 5678999999999999998 6677655 689999999999


Q ss_pred             eCCCCCCccchhccCCCCCceeecccc
Q 013724          371 NGCSILQRLNFDIWSILPLVLTTFIYV  397 (437)
Q Consensus       371 s~c~~l~~lP~~l~~L~~L~~L~~~~~  397 (437)
                      ++|.+.+-.+..+..+++|+.|++.+.
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence            998755433446899999999998664

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.96  E-value=3.6e-09  Score=94.30  Aligned_cols=99  Identities=22%  Similarity=0.342  Sum_probs=82.7

Q ss_pred             ccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCccc-ChhhcCCCCCCEEeccCCCCCCCCccc-cCCCCCCCEEeee
Q 013724          295 LKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLN  371 (437)
Q Consensus       295 L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~L~~n~~l~~LP~~-l~~L~~L~~L~Ls  371 (437)
                      -+.+++++|. ++.+|. +.  ++|+.|+|++|.|+.+ |..+..+++|+.|+|++|+ +..+|.. +..+++|++|+|+
T Consensus        14 ~~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECC
Confidence            3789999875 567776 54  8999999999999987 5678999999999999998 7778765 5899999999999


Q ss_pred             CCCCCCccchh-ccCCCCCceeeccccc
Q 013724          372 GCSILQRLNFD-IWSILPLVLTTFIYVY  398 (437)
Q Consensus       372 ~c~~l~~lP~~-l~~L~~L~~L~~~~~~  398 (437)
                      +|.+ ..+|.. +..+++|+.|++.++.
T Consensus        90 ~N~l-~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           90 DNHL-KSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             SSCC-CCCCTTTTTTCTTCSEEECCSSC
T ss_pred             CCcc-ceeCHHHhccccCCCEEEeCCCC
Confidence            9765 466654 8999999999986643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.94  E-value=2.4e-09  Score=105.38  Aligned_cols=101  Identities=19%  Similarity=0.143  Sum_probs=68.7

Q ss_pred             EEeccCCCCCCCcCccC-CCCCccEEeeeC-CCCCCCCCC-CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEEeccCC
Q 013724          274 VLNLRDCKSLKSLPAGI-HLEFLKELDLSG-CSKLKRLPD-ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDC  349 (437)
Q Consensus       274 ~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~-n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n  349 (437)
                      .++.++++.+..+|. + .+++|+.|+|++ |.+....+. |..|++|+.|+|++|.|+.+|+ .|..|++|+.|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            346666622667777 6 777888888875 544433333 7778888888888888886654 5677888888888887


Q ss_pred             CCCCCCccccCCCCCCCEEeeeCCCCC
Q 013724          350 KSLKSLPSGLCKLKSLKYLTLNGCSIL  376 (437)
Q Consensus       350 ~~l~~LP~~l~~L~~L~~L~Ls~c~~l  376 (437)
                      . +..+|..+.....|+.|+|.+|+..
T Consensus        91 ~-l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 A-LESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             C-CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             c-cceeCHHHcccCCceEEEeeCCCcc
Confidence            7 6666655433333888888877644

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.91  E-value=8.1e-11  Score=117.04  Aligned_cols=153  Identities=16%  Similarity=0.097  Sum_probs=94.3

Q ss_pred             hhhhhhcccCcccCCCCCCcccccc-----CceEEEeccCCCCCCCcCccC-----CC-CCccEEeeeCCCCCCCCCC--
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHL-----NTLVVLNLRDCKSLKSLPAGI-----HL-EFLKELDLSGCSKLKRLPD--  311 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l-----~~L~~L~Ls~n~~l~~lp~~~-----~l-~~L~~L~Ls~n~~~~~lp~--  311 (437)
                      .|+.|++++|......+  ..+..+     ++|++|+|++|.+....+..+     .+ ++|+.|+|++|.+....+.  
T Consensus        52 ~L~~L~Ls~N~l~~~~~--~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  129 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNS--DELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF  129 (362)
T ss_dssp             TCCEEECCSSCGGGSCH--HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             ceeEEECcCCCCCHHHH--HHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHH
Confidence            56777787775543221  112222     778888888887333333322     34 7888888888775443332  


Q ss_pred             ---CCC-CCCCCEEEeeCCCCc-----ccChhhcCCC-CCCEEeccCCCCCCCCcc----ccCCC-CCCCEEeeeCCCCC
Q 013724          312 ---ISS-AANIEEMFLNGTAIE-----ELPSSIECLY-KLLHLDLEDCKSLKSLPS----GLCKL-KSLKYLTLNGCSIL  376 (437)
Q Consensus       312 ---l~~-l~~L~~L~Ls~n~l~-----~lp~~i~~L~-~L~~L~L~~n~~l~~LP~----~l~~L-~~L~~L~Ls~c~~l  376 (437)
                         +.. ..+|++|+|++|.|.     .++..+..++ +|+.|+|++|......+.    .+..+ ++|++|+|++|...
T Consensus       130 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          130 KQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             HHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence               333 357888888888877     3455556665 888888888873333332    23444 58888888887643


Q ss_pred             C----ccchhccCC-CCCceeecccccc
Q 013724          377 Q----RLNFDIWSI-LPLVLTTFIYVYK  399 (437)
Q Consensus       377 ~----~lP~~l~~L-~~L~~L~~~~~~~  399 (437)
                      .    .++..+..+ ++|+.|++.++..
T Consensus       210 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  237 (362)
T 3goz_A          210 LKSYAELAYIFSSIPNHVVSLNLCLNCL  237 (362)
T ss_dssp             GSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred             hhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence            3    266666654 4788888766543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.91  E-value=7.4e-11  Score=124.27  Aligned_cols=150  Identities=15%  Similarity=0.040  Sum_probs=85.9

Q ss_pred             hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCC----cCccC-CCCCccEEeeeCCCCCC----CCCC-CCCC
Q 013724          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKS----LPAGI-HLEFLKELDLSGCSKLK----RLPD-ISSA  315 (437)
Q Consensus       246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~----lp~~~-~l~~L~~L~Ls~n~~~~----~lp~-l~~l  315 (437)
                      |+.|++++|........+.....+++|++|+|++|.+.+.    ++... .+++|+.|+|++|....    .++. +.++
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            7777777776332222222234577888888888863332    22222 67788888888776541    2233 4567


Q ss_pred             CCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCC--------------------------CCCCccccCCCCCCCEEe
Q 013724          316 ANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKS--------------------------LKSLPSGLCKLKSLKYLT  369 (437)
Q Consensus       316 ~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~--------------------------l~~LP~~l~~L~~L~~L~  369 (437)
                      ++|+.|+|++|.+..+|..+..+++|+.|+++.+..                          ...+|..+..+++|++|+
T Consensus       220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~  299 (592)
T 3ogk_B          220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD  299 (592)
T ss_dssp             TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEE
T ss_pred             CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEe
Confidence            788888888877777777777777777777764321                          233444444555555566


Q ss_pred             eeCCCCCCc-cchhccCCCCCceeecc
Q 013724          370 LNGCSILQR-LNFDIWSILPLVLTTFI  395 (437)
Q Consensus       370 Ls~c~~l~~-lP~~l~~L~~L~~L~~~  395 (437)
                      |++|..... ++..+..+++|+.|++.
T Consensus       300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          300 LLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             ETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             cCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            655552222 12234555555555543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.83  E-value=7.7e-11  Score=120.21  Aligned_cols=130  Identities=19%  Similarity=0.217  Sum_probs=57.1

Q ss_pred             hhhhhhcccCcccCCC--CCCccccccCceEEEeccCCCCCCCcCccC--CCC----CccEEeeeCCCCCC----CCCC-
Q 013724          245 ALKEKIISACNIFTKT--PNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLE----FLKELDLSGCSKLK----RLPD-  311 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~--~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~----~L~~L~Ls~n~~~~----~lp~-  311 (437)
                      .|+.|++++|......  ..+..+..+++|++|++++|.+....+..+  .++    +|++|+|++|.+..    .++. 
T Consensus        29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~  108 (461)
T 1z7x_W           29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST  108 (461)
T ss_dssp             TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH
Confidence            4555666655432110  011123344556666666655222112111  233    46666666654332    2233 


Q ss_pred             CCCCCCCCEEEeeCCCCccc-Chhh-----cCCCCCCEEeccCCCCCC----CCccccCCCCCCCEEeeeCCC
Q 013724          312 ISSAANIEEMFLNGTAIEEL-PSSI-----ECLYKLLHLDLEDCKSLK----SLPSGLCKLKSLKYLTLNGCS  374 (437)
Q Consensus       312 l~~l~~L~~L~Ls~n~l~~l-p~~i-----~~L~~L~~L~L~~n~~l~----~LP~~l~~L~~L~~L~Ls~c~  374 (437)
                      +..+++|++|+|++|.+... +..+     ..+++|+.|++++|....    .++..+..+++|++|++++|.
T Consensus       109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  181 (461)
T 1z7x_W          109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND  181 (461)
T ss_dssp             TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence            55555666666666555421 1111     113445555555554221    123334444555555555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.80  E-value=1.3e-08  Score=100.04  Aligned_cols=100  Identities=18%  Similarity=0.188  Sum_probs=79.5

Q ss_pred             EEeeeCCCCCCCCCCCCCCCCCCEEEeeC-CCCcccC-hhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCC
Q 013724          297 ELDLSGCSKLKRLPDISSAANIEEMFLNG-TAIEELP-SSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCS  374 (437)
Q Consensus       297 ~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~-n~l~~lp-~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~  374 (437)
                      .+++++++.+..+|.+..+++|+.|+|++ |.|+.+| ..|+.|++|+.|+|++|...+..|..|.+|++|+.|+|++|.
T Consensus        12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            46777763566688888899999999996 9999887 578999999999999998444445678999999999999976


Q ss_pred             CCCccchhccCCCCCceeecccc
Q 013724          375 ILQRLNFDIWSILPLVLTTFIYV  397 (437)
Q Consensus       375 ~l~~lP~~l~~L~~L~~L~~~~~  397 (437)
                       +..+|..+.....|+.|++.++
T Consensus        92 -l~~~~~~~~~~~~L~~l~l~~N  113 (347)
T 2ifg_A           92 -LESLSWKTVQGLSLQELVLSGN  113 (347)
T ss_dssp             -CSCCCSTTTCSCCCCEEECCSS
T ss_pred             -cceeCHHHcccCCceEEEeeCC
Confidence             4567655444344999988543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.79  E-value=1.2e-10  Score=118.92  Aligned_cols=151  Identities=19%  Similarity=0.139  Sum_probs=108.6

Q ss_pred             hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCC-----CcCccC-CCCCccEEeeeCCCCCCCCC-C-CCCCC-
Q 013724          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLK-----SLPAGI-HLEFLKELDLSGCSKLKRLP-D-ISSAA-  316 (437)
Q Consensus       246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~-----~lp~~~-~l~~L~~L~Ls~n~~~~~lp-~-l~~l~-  316 (437)
                      |+.|+++++.... ......+..+++|++|++++|. ++     .++..+ .+++|++|+|++|.+....+ . ...+. 
T Consensus         5 l~~L~Ls~~~l~~-~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            5 IQSLDIQCEELSD-ARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEESCCCCH-HHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ceehhhhhcccCc-hhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            5667777665432 2222335678999999999998 54     345555 78999999999987544222 1 22344 


Q ss_pred             ---CCCEEEeeCCCCc-----ccChhhcCCCCCCEEeccCCCCCCCCcc----c-cCCCCCCCEEeeeCCCCCC----cc
Q 013724          317 ---NIEEMFLNGTAIE-----ELPSSIECLYKLLHLDLEDCKSLKSLPS----G-LCKLKSLKYLTLNGCSILQ----RL  379 (437)
Q Consensus       317 ---~L~~L~Ls~n~l~-----~lp~~i~~L~~L~~L~L~~n~~l~~LP~----~-l~~L~~L~~L~Ls~c~~l~----~l  379 (437)
                         +|++|+|++|.|.     .+|..+..+++|+.|+|++|.....-+.    . ....++|++|++++|....    .+
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               7999999999998     4688899999999999999983222222    2 2346789999999997655    35


Q ss_pred             chhccCCCCCceeeccccc
Q 013724          380 NFDIWSILPLVLTTFIYVY  398 (437)
Q Consensus       380 P~~l~~L~~L~~L~~~~~~  398 (437)
                      +..+..+++|+.|++.++.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~  181 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNND  181 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSB
T ss_pred             HHHHhhCCCCCEEECcCCC
Confidence            6677788999999987765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.76  E-value=1.5e-09  Score=107.91  Aligned_cols=156  Identities=14%  Similarity=0.077  Sum_probs=111.0

Q ss_pred             hhhhhhcccCcccCCCCCC--ccccccC-ceEEEeccCCCCCCCcCccC-CC-----CCccEEeeeCCCCCCCCCC----
Q 013724          245 ALKEKIISACNIFTKTPNP--SFSQHLN-TLVVLNLRDCKSLKSLPAGI-HL-----EFLKELDLSGCSKLKRLPD----  311 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~--~~~~~l~-~L~~L~Ls~n~~l~~lp~~~-~l-----~~L~~L~Ls~n~~~~~lp~----  311 (437)
                      .|+.|++++|.........  ..+..++ +|++|+|++|.+....+..+ .+     ++|++|+|++|.+....+.    
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            4888999998754332100  2345577 89999999998444334444 32     8999999999986655554    


Q ss_pred             -CCCC-CCCCEEEeeCCCCcccCh-h----hcC-CCCCCEEeccCCCCCC----CCccccCCCC-CCCEEeeeCCCCCCc
Q 013724          312 -ISSA-ANIEEMFLNGTAIEELPS-S----IEC-LYKLLHLDLEDCKSLK----SLPSGLCKLK-SLKYLTLNGCSILQR  378 (437)
Q Consensus       312 -l~~l-~~L~~L~Ls~n~l~~lp~-~----i~~-L~~L~~L~L~~n~~l~----~LP~~l~~L~-~L~~L~Ls~c~~l~~  378 (437)
                       +..+ ++|++|+|++|.|+..+. .    +.. .++|+.|+|++|....    .++..+..++ +|++|+|++|.....
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~  182 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK  182 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence             4444 899999999999996653 2    344 3699999999998332    4555566666 999999999986665


Q ss_pred             cchh----ccCC-CCCceeecccccch
Q 013724          379 LNFD----IWSI-LPLVLTTFIYVYKF  400 (437)
Q Consensus       379 lP~~----l~~L-~~L~~L~~~~~~~~  400 (437)
                      .+..    +..+ ++|+.|++.+|...
T Consensus       183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          183 NCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             CHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             hHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence            5544    4455 59999999877644

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.68  E-value=5.9e-08  Score=94.94  Aligned_cols=83  Identities=13%  Similarity=0.055  Sum_probs=51.7

Q ss_pred             CCCCCEEeccCCCCCCCCcc-ccCCCCCCCEEeeeCCCCCCccch-hccCCCCCc-eeecccccchhhccccccCCCccc
Q 013724          338 LYKLLHLDLEDCKSLKSLPS-GLCKLKSLKYLTLNGCSILQRLNF-DIWSILPLV-LTTFIYVYKFFVETSAASGDDWKS  414 (437)
Q Consensus       338 L~~L~~L~L~~n~~l~~LP~-~l~~L~~L~~L~Ls~c~~l~~lP~-~l~~L~~L~-~L~~~~~~~~~~~~~~~~~~~~~~  414 (437)
                      +++|+.|+|.+|. +..+|. .+.+|++|+.|+|..|  +..++. .|..+.+|+ .+.+..   ............+..
T Consensus       225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~---~l~~I~~~aF~~c~~  298 (329)
T 3sb4_A          225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA---SVTAIEFGAFMGCDN  298 (329)
T ss_dssp             CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT---TCCEECTTTTTTCTT
T ss_pred             cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc---cceEEchhhhhCCcc
Confidence            6677777777766 666664 3677777777777765  556653 467777777 776533   222333344555666


Q ss_pred             ccccccCCCCCC
Q 013724          415 AFDAAADGPVKP  426 (437)
Q Consensus       415 l~~~~~s~~~~~  426 (437)
                      |+.+...++.+.
T Consensus       299 L~~l~l~~n~i~  310 (329)
T 3sb4_A          299 LRYVLATGDKIT  310 (329)
T ss_dssp             EEEEEECSSCCC
T ss_pred             CCEEEeCCCccC
Confidence            777766555444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.67  E-value=1.1e-09  Score=109.69  Aligned_cols=161  Identities=14%  Similarity=0.060  Sum_probs=106.2

Q ss_pred             HHHHHHHhhhhhhcccCcccCCCCC--Cccc-cccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-
Q 013724          238 KLQTWRNALKEKIISACNIFTKTPN--PSFS-QHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-  311 (437)
Q Consensus       238 ~l~~W~~aL~~L~Ls~~~~~~~~~~--~~~~-~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-  311 (437)
                      .+..-...|+.|++++|........  ...+ ....+|+.|+|++|.+...-...+  .+++|+.|+|++|.+...-.. 
T Consensus        66 l~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~  145 (372)
T 3un9_A           66 FSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD  145 (372)
T ss_dssp             HHHHHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred             HHHHHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence            3444455677788888764321110  0011 123689999999997322222222  567899999999865432111 


Q ss_pred             C-----CCCCCCCEEEeeCCCCcc-----cChhhcCCCCCCEEeccCCCCCCC-----CccccCCCCCCCEEeeeCCCCC
Q 013724          312 I-----SSAANIEEMFLNGTAIEE-----LPSSIECLYKLLHLDLEDCKSLKS-----LPSGLCKLKSLKYLTLNGCSIL  376 (437)
Q Consensus       312 l-----~~l~~L~~L~Ls~n~l~~-----lp~~i~~L~~L~~L~L~~n~~l~~-----LP~~l~~L~~L~~L~Ls~c~~l  376 (437)
                      +     ...++|+.|+|++|.|+.     ++..+..+++|++|+|++|. ++.     ++..+..+++|++|+|++|.+.
T Consensus       146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            2     346789999999998863     55566788899999999988 443     4556777888999999998764


Q ss_pred             C----ccchhccCCCCCceeecccccc
Q 013724          377 Q----RLNFDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       377 ~----~lP~~l~~L~~L~~L~~~~~~~  399 (437)
                      .    .++..+...++|+.|++.+|..
T Consensus       225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          225 DTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             HHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence            3    3555666778899999877653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.64  E-value=7.4e-10  Score=116.50  Aligned_cols=106  Identities=23%  Similarity=0.256  Sum_probs=56.4

Q ss_pred             ccCceEEEeccCCCCCCC--cCccC-CCCCccEEeeeCCCCCCC----CCC-CCCCCCCCEEEeeCCC--Cc--ccChhh
Q 013724          268 HLNTLVVLNLRDCKSLKS--LPAGI-HLEFLKELDLSGCSKLKR----LPD-ISSAANIEEMFLNGTA--IE--ELPSSI  335 (437)
Q Consensus       268 ~l~~L~~L~Ls~n~~l~~--lp~~~-~l~~L~~L~Ls~n~~~~~----lp~-l~~l~~L~~L~Ls~n~--l~--~lp~~i  335 (437)
                      .+++|++|++++|..++.  ++... .+++|++|+|++|.+...    ++. ...+++|+.|+|++|.  +.  .++..+
T Consensus       128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~  207 (594)
T 2p1m_B          128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV  207 (594)
T ss_dssp             HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred             hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence            456666666666632332  22222 566666666666653221    122 2245566666666654  22  222223


Q ss_pred             cCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCC
Q 013724          336 ECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGC  373 (437)
Q Consensus       336 ~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c  373 (437)
                      ..+++|+.|+|++|..++.+|..+..+++|++|++..|
T Consensus       208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred             HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence            44566666666666445555555666666666665443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.60  E-value=3.2e-09  Score=111.74  Aligned_cols=105  Identities=12%  Similarity=0.046  Sum_probs=50.9

Q ss_pred             hhhhhhcccCcccCC--CCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCC---CCC-CCCCCCC
Q 013724          245 ALKEKIISACNIFTK--TPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLK---RLP-DISSAAN  317 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~--~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~---~lp-~l~~l~~  317 (437)
                      .|+.|+++++...+.  ...+..+..+++|+.|++++|. +..+|..+ .+++|+.|+++++....   ..+ .+..+++
T Consensus       193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~  271 (592)
T 3ogk_B          193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK  271 (592)
T ss_dssp             CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred             CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence            455566655543211  0111223355666666666665 44455444 55666666665432221   111 1444555


Q ss_pred             CCEEEeeCCCCcccChhhcCCCCCCEEeccCCC
Q 013724          318 IEEMFLNGTAIEELPSSIECLYKLLHLDLEDCK  350 (437)
Q Consensus       318 L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~  350 (437)
                      |+.|+++++....+|..+..+++|+.|+|++|.
T Consensus       272 L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL  304 (592)
T ss_dssp             CCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred             ccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence            555555554444455555555555555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.45  E-value=1.1e-08  Score=107.54  Aligned_cols=131  Identities=11%  Similarity=0.018  Sum_probs=82.2

Q ss_pred             ccCceEEEeccCCCCCCCcCccC--CCCCccEEeee-----CCCCCCCCCC-------CCCCCCCCEEEeeCCCCc-ccC
Q 013724          268 HLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLS-----GCSKLKRLPD-------ISSAANIEEMFLNGTAIE-ELP  332 (437)
Q Consensus       268 ~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls-----~n~~~~~lp~-------l~~l~~L~~L~Ls~n~l~-~lp  332 (437)
                      .+++|+.|.+..|.+.......+  .+++|+.|+|+     +|..++..|.       +..+++|+.|+|++ .++ ..+
T Consensus       370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~  448 (594)
T 2p1m_B          370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF  448 (594)
T ss_dssp             HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred             hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence            46677777665555222222222  47888888888     4444554331       45577888888876 555 333


Q ss_pred             hhhcC-CCCCCEEeccCCCCCCCCcccc-CCCCCCCEEeeeCCCCCCccc-hhccCCCCCceeecccccc
Q 013724          333 SSIEC-LYKLLHLDLEDCKSLKSLPSGL-CKLKSLKYLTLNGCSILQRLN-FDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       333 ~~i~~-L~~L~~L~L~~n~~l~~LP~~l-~~L~~L~~L~Ls~c~~l~~lP-~~l~~L~~L~~L~~~~~~~  399 (437)
                      ..+.. +++|+.|+|++|.....-+..+ ..+++|+.|+|++|+.....+ ..+..+++|+.|++.+|..
T Consensus       449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            44544 7888888888887333222233 567888888888888743333 2445578888888888765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.38  E-value=8.7e-07  Score=86.53  Aligned_cols=76  Identities=16%  Similarity=0.142  Sum_probs=53.6

Q ss_pred             CCCCCEEEeeCCCCcccCh-hhcCCCCCCEEeccCCCCCCCCcc-ccCCCCCCC-EEeeeCCCCCCccc-hhccCCCCCc
Q 013724          315 AANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPS-GLCKLKSLK-YLTLNGCSILQRLN-FDIWSILPLV  390 (437)
Q Consensus       315 l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n~~l~~LP~-~l~~L~~L~-~L~Ls~c~~l~~lP-~~l~~L~~L~  390 (437)
                      +++|+.|+|++|+++.||. .|..|++|+.|+|.+|  +..++. .+.+|++|+ .|++..  .+..++ ..|..+.+|+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence            5677888888777777765 4677778888888775  555654 467777787 787765  355554 5577777777


Q ss_pred             eeec
Q 013724          391 LTTF  394 (437)
Q Consensus       391 ~L~~  394 (437)
                      .+++
T Consensus       301 ~l~l  304 (329)
T 3sb4_A          301 YVLA  304 (329)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.34  E-value=1.2e-08  Score=102.22  Aligned_cols=156  Identities=15%  Similarity=0.052  Sum_probs=106.3

Q ss_pred             cCceEEEeccCCCCCCCcC-ccC------CCCCccEEeeeCCCCCCCC-CCC-CCCCCCCEEEeeCCCCccc-----Chh
Q 013724          269 LNTLVVLNLRDCKSLKSLP-AGI------HLEFLKELDLSGCSKLKRL-PDI-SSAANIEEMFLNGTAIEEL-----PSS  334 (437)
Q Consensus       269 l~~L~~L~Ls~n~~l~~lp-~~~------~l~~L~~L~Ls~n~~~~~l-p~l-~~l~~L~~L~Ls~n~l~~l-----p~~  334 (437)
                      +++|+.|+|++|. ++... ..+      ..++|+.|+|++|.+...- ..+ ..+.+|+.|+|++|.|...     ...
T Consensus        71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            4678999999998 44322 111      2369999999999754321 122 3467899999999999732     222


Q ss_pred             h-cCCCCCCEEeccCCCCCCC-----CccccCCCCCCCEEeeeCCCCCC----ccchhccCCCCCceeecccccchhhcc
Q 013724          335 I-ECLYKLLHLDLEDCKSLKS-----LPSGLCKLKSLKYLTLNGCSILQ----RLNFDIWSILPLVLTTFIYVYKFFVET  404 (437)
Q Consensus       335 i-~~L~~L~~L~L~~n~~l~~-----LP~~l~~L~~L~~L~Ls~c~~l~----~lP~~l~~L~~L~~L~~~~~~~~~~~~  404 (437)
                      + ...++|+.|+|++|. ++.     ++..+..+++|++|+|++|....    .++..+...++|+.|++.+|.......
T Consensus       150 L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~  228 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA  228 (372)
T ss_dssp             HHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred             HHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence            3 346899999999998 543     55666789999999999987543    356777888999999998875432211


Q ss_pred             c--cccCCCcccccccccCCCCCC
Q 013724          405 S--AASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       405 ~--~~~~~~~~~l~~~~~s~~~~~  426 (437)
                      .  .......+.++.+..+++.+.
T Consensus       229 ~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          229 LALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHHHhCCCCCEEeccCCCCC
Confidence            1  111223345667777776654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.10  E-value=6.5e-07  Score=89.14  Aligned_cols=130  Identities=17%  Similarity=0.172  Sum_probs=68.5

Q ss_pred             ccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCC-CC--CCCCCCCEEEeeC--CC------CcccChh
Q 013724          266 SQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLP-DI--SSAANIEEMFLNG--TA------IEELPSS  334 (437)
Q Consensus       266 ~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp-~l--~~l~~L~~L~Ls~--n~------l~~lp~~  334 (437)
                      +..+|+|+.|+|++|..+ .++. +.+++|+.|+|..|.+....- .+  ..+++|+.|+|+.  +.      +..+...
T Consensus       168 l~~~P~L~~L~L~g~~~l-~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~  245 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNL-SIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL  245 (362)
T ss_dssp             HHTCTTCCEEEEECCBTC-BCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred             HhcCCCCcEEEEeCCCCc-eecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence            345667777777766322 2333 346677777777654322111 12  2567777777652  11      2122222


Q ss_pred             h--cCCCCCCEEeccCCCCCCCCcccc---CCCCCCCEEeeeCCCCCCc----cchhccCCCCCceeecccc
Q 013724          335 I--ECLYKLLHLDLEDCKSLKSLPSGL---CKLKSLKYLTLNGCSILQR----LNFDIWSILPLVLTTFIYV  397 (437)
Q Consensus       335 i--~~L~~L~~L~L~~n~~l~~LP~~l---~~L~~L~~L~Ls~c~~l~~----lP~~l~~L~~L~~L~~~~~  397 (437)
                      +  ..+++|++|+|.+|......+..+   ..+++|++|+|+.|.....    ++..+.++++|+.|++..|
T Consensus       246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence            2  246677777777766332222222   2466777777766543322    4444455677777776555

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.03  E-value=4.2e-06  Score=83.30  Aligned_cols=129  Identities=13%  Similarity=0.085  Sum_probs=85.5

Q ss_pred             cccCceEEEeccCCCC---------CCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCc-ccChhh
Q 013724          267 QHLNTLVVLNLRDCKS---------LKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIE-ELPSSI  335 (437)
Q Consensus       267 ~~l~~L~~L~Ls~n~~---------l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~-~lp~~i  335 (437)
                      ..+++|+.|.+.....         .+.+...+ .+++|+.|+|++|... .++.+. +++|+.|+|..+.+. .....+
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~~~-~~~L~~L~L~~~~l~~~~l~~l  213 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGKKP-RPNLKSLEIISGGLPDSVVEDI  213 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCSCB-CTTCSEEEEECSBCCHHHHHHH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecccc-CCCCcEEEEecCCCChHHHHHH
Confidence            3578888888865431         11233333 7899999999997433 344444 899999999998876 322344


Q ss_pred             c--CCCCCCEEeccCC--CC-----CCCCcccc--CCCCCCCEEeeeCCCCCCccchhc---cCCCCCceeecccc
Q 013724          336 E--CLYKLLHLDLEDC--KS-----LKSLPSGL--CKLKSLKYLTLNGCSILQRLNFDI---WSILPLVLTTFIYV  397 (437)
Q Consensus       336 ~--~L~~L~~L~L~~n--~~-----l~~LP~~l--~~L~~L~~L~Ls~c~~l~~lP~~l---~~L~~L~~L~~~~~  397 (437)
                      .  .+++|+.|+|+.+  ..     +..+...+  ..+++|++|+|.+|......+..+   ..+++|+.|++..+
T Consensus       214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n  289 (362)
T 2ra8_A          214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG  289 (362)
T ss_dssp             HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred             HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence            3  7899999998632  11     11222223  358999999999988665444333   35789999998654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.99  E-value=4.4e-06  Score=79.49  Aligned_cols=58  Identities=26%  Similarity=0.174  Sum_probs=26.3

Q ss_pred             hhcCCCCCCEEeccCCCCCCCCccccCCCC--CCCEEeeeCCCCCCccc-------hhccCCCCCceee
Q 013724          334 SIECLYKLLHLDLEDCKSLKSLPSGLCKLK--SLKYLTLNGCSILQRLN-------FDIWSILPLVLTT  393 (437)
Q Consensus       334 ~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~--~L~~L~Ls~c~~l~~lP-------~~l~~L~~L~~L~  393 (437)
                      .+..+++|+.|+|++|. +..+ ..+..++  +|++|+|++|+..+.+|       ..+..+++|+.|+
T Consensus       191 ~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          191 IVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             HHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            33444455555555444 3332 1122222  55555555555444443       1244555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.95  E-value=4.2e-06  Score=79.69  Aligned_cols=100  Identities=17%  Similarity=0.191  Sum_probs=70.0

Q ss_pred             cCceEE--EeccCCCCCCCcCccC-----CCCCccEEeeeCCCCCC--CCCC-CCCCCCCCEEEeeCCCCcccChhhcCC
Q 013724          269 LNTLVV--LNLRDCKSLKSLPAGI-----HLEFLKELDLSGCSKLK--RLPD-ISSAANIEEMFLNGTAIEELPSSIECL  338 (437)
Q Consensus       269 l~~L~~--L~Ls~n~~l~~lp~~~-----~l~~L~~L~Ls~n~~~~--~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L  338 (437)
                      .+.|..  ++++.|. ...++..+     .+++|+.|+|++|.+.+  .+|. +..+++|+.|+|++|.|+.+ ..+..+
T Consensus       140 dp~L~~~~l~l~~N~-~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l  217 (267)
T 3rw6_A          140 DPDLVAQNIDVVLNR-RSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKI  217 (267)
T ss_dssp             CHHHHHTTCCCCTTS-HHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGG
T ss_pred             CcchhhcCccccCCH-HHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhc
Confidence            344444  5556654 33344322     67899999999987655  3444 56789999999999999876 334555


Q ss_pred             C--CCCEEeccCCCCCCCCcc-------ccCCCCCCCEEee
Q 013724          339 Y--KLLHLDLEDCKSLKSLPS-------GLCKLKSLKYLTL  370 (437)
Q Consensus       339 ~--~L~~L~L~~n~~l~~LP~-------~l~~L~~L~~L~L  370 (437)
                      .  +|+.|+|.+|...+.+|.       .+..+++|+.||=
T Consensus       218 ~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          218 KGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             TTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             ccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence            5  899999999996665652       3677889998873

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.94  E-value=9.3e-06  Score=72.28  Aligned_cols=86  Identities=16%  Similarity=0.274  Sum_probs=56.0

Q ss_pred             CCccEEeeeCCCCCCC-CCCCCCCCCCCEEEeeCCC-Cc-ccChhhcCC----CCCCEEeccCCCCCCCCc-cccCCCCC
Q 013724          293 EFLKELDLSGCSKLKR-LPDISSAANIEEMFLNGTA-IE-ELPSSIECL----YKLLHLDLEDCKSLKSLP-SGLCKLKS  364 (437)
Q Consensus       293 ~~L~~L~Ls~n~~~~~-lp~l~~l~~L~~L~Ls~n~-l~-~lp~~i~~L----~~L~~L~L~~n~~l~~LP-~~l~~L~~  364 (437)
                      ..|+.|+|++|.+... +..+..+++|+.|+|+++. |+ .--..+..+    ++|+.|+|++|..++.-- ..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            4677777777763321 2336677788888887763 55 222334443    478888888887665421 23567888


Q ss_pred             CCEEeeeCCCCCCc
Q 013724          365 LKYLTLNGCSILQR  378 (437)
Q Consensus       365 L~~L~Ls~c~~l~~  378 (437)
                      |++|+|++|+.++.
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            88888888887664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.90  E-value=0.00011  Score=74.03  Aligned_cols=152  Identities=11%  Similarity=0.053  Sum_probs=85.1

Q ss_pred             ccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeC-----------------
Q 013724          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNG-----------------  325 (437)
Q Consensus       266 ~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~-----------------  325 (437)
                      +..|.+|+.+++.+|. +..++... .+.+|+.+.|..+  +..++.  |.++++|+.++|..                 
T Consensus       176 F~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~  252 (401)
T 4fdw_A          176 FYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITT  252 (401)
T ss_dssp             TTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSE
T ss_pred             hhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccCccccccccCCccE
Confidence            4557777777777765 55566554 5566666666532  333333  55555555555543                 


Q ss_pred             ----CCCcccC-hhhcCCCCCCEEeccCCCCC----CCCc-cccCCCCCCCEEeeeCCCCCCccc-hhccCCCCCceeec
Q 013724          326 ----TAIEELP-SSIECLYKLLHLDLEDCKSL----KSLP-SGLCKLKSLKYLTLNGCSILQRLN-FDIWSILPLVLTTF  394 (437)
Q Consensus       326 ----n~l~~lp-~~i~~L~~L~~L~L~~n~~l----~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP-~~l~~L~~L~~L~~  394 (437)
                          +.++.++ ..|.+|++|+.+.+.+|...    ..++ ..+.+|++|+.++|..  .+..++ ..|..+.+|+.+.+
T Consensus       253 i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          253 VKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTI  330 (401)
T ss_dssp             EEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEE
T ss_pred             EEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEE
Confidence                2334442 34566777777777665421    1233 3466777777777763  255555 34666777777765


Q ss_pred             ccccchhhccccccCCCcccccccccCCCCCC
Q 013724          395 IYVYKFFVETSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                      ..   ............+ .|+.+...++..+
T Consensus       331 p~---~l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          331 PA---NVTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             CT---TCCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             Cc---cccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            22   2222223334445 6666666665444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.89  E-value=1.6e-06  Score=77.71  Aligned_cols=104  Identities=13%  Similarity=0.202  Sum_probs=56.3

Q ss_pred             cCceEEEeccCC-CCCCC-----cCccC-CCCCccEEeeeCCCCCCC----CCC-CCCCCCCCEEEeeCCCCcc-----c
Q 013724          269 LNTLVVLNLRDC-KSLKS-----LPAGI-HLEFLKELDLSGCSKLKR----LPD-ISSAANIEEMFLNGTAIEE-----L  331 (437)
Q Consensus       269 l~~L~~L~Ls~n-~~l~~-----lp~~~-~l~~L~~L~Ls~n~~~~~----lp~-l~~l~~L~~L~Ls~n~l~~-----l  331 (437)
                      .+.|++|+|++| . ++.     +...+ ..++|++|+|++|.+...    +.. +...++|++|+|++|.|..     +
T Consensus        35 ~~~L~~L~L~~n~~-i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           35 DPDLEEVNLNNIMN-IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             CTTCCEEECTTCTT-CCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             CCCCCEEEecCCCC-CCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            456777777777 4 432     11122 456677777777653221    111 3344566666666666652     3


Q ss_pred             ChhhcCCCCCCEEec--cCCCCCCC-----CccccCCCCCCCEEeeeCCC
Q 013724          332 PSSIECLYKLLHLDL--EDCKSLKS-----LPSGLCKLKSLKYLTLNGCS  374 (437)
Q Consensus       332 p~~i~~L~~L~~L~L--~~n~~l~~-----LP~~l~~L~~L~~L~Ls~c~  374 (437)
                      ...+...++|+.|+|  ++|. ++.     +...+...++|++|+|++|.
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            445555666666666  5555 332     23334445666666666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.87  E-value=4.6e-06  Score=74.73  Aligned_cols=108  Identities=14%  Similarity=0.142  Sum_probs=82.3

Q ss_pred             CCCCccEEeeeCC-CCCCC----CCC-CCCCCCCCEEEeeCCCCcc-----cChhhcCCCCCCEEeccCCCCCCC-----
Q 013724          291 HLEFLKELDLSGC-SKLKR----LPD-ISSAANIEEMFLNGTAIEE-----LPSSIECLYKLLHLDLEDCKSLKS-----  354 (437)
Q Consensus       291 ~l~~L~~L~Ls~n-~~~~~----lp~-l~~l~~L~~L~Ls~n~l~~-----lp~~i~~L~~L~~L~L~~n~~l~~-----  354 (437)
                      ..+.|+.|+|++| .+...    +.. +...++|++|+|++|.|..     +...+...++|++|+|++|. ++.     
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~  112 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILA  112 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHH
Confidence            6789999999998 54321    222 6667899999999999972     45566777899999999998 554     


Q ss_pred             CccccCCCCCCCEEee--eCCCCCCc----cchhccCCCCCceeecccccc
Q 013724          355 LPSGLCKLKSLKYLTL--NGCSILQR----LNFDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       355 LP~~l~~L~~L~~L~L--s~c~~l~~----lP~~l~~L~~L~~L~~~~~~~  399 (437)
                      +...+...++|++|+|  ++|.....    +...+...++|+.|++.+|..
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            5566788899999999  77765433    556667778999999876643

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.79  E-value=2e-05  Score=70.08  Aligned_cols=87  Identities=14%  Similarity=0.071  Sum_probs=66.7

Q ss_pred             CCCCEEEeeCCCCc-ccChhhcCCCCCCEEeccCCCCCCCCc-cccCCC----CCCCEEeeeCCCCCCc-cchhccCCCC
Q 013724          316 ANIEEMFLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLP-SGLCKL----KSLKYLTLNGCSILQR-LNFDIWSILP  388 (437)
Q Consensus       316 ~~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~L~~n~~l~~LP-~~l~~L----~~L~~L~Ls~c~~l~~-lP~~l~~L~~  388 (437)
                      .+|+.|||+++.|+ .--..+..|++|+.|+|++|..++.-- ..+..+    ++|++|+|++|..++. --..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            47999999999988 323567899999999999998776521 224443    4799999999986654 2235778999


Q ss_pred             Cceeecccccchhh
Q 013724          389 LVLTTFIYVYKFFV  402 (437)
Q Consensus       389 L~~L~~~~~~~~~~  402 (437)
                      |+.|++.+|.....
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            99999999986643

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.52  E-value=0.00049  Score=69.16  Aligned_cols=164  Identities=14%  Similarity=0.127  Sum_probs=104.6

Q ss_pred             hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEE
Q 013724          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM  321 (437)
Q Consensus       246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L  321 (437)
                      |+.+.+..+  +..+....|..  .+|+.+.+.. . +..++...  .|++|+.++|.+|. +..+|.  |. ..+|+.+
T Consensus       137 L~~i~l~~~--i~~I~~~aF~~--~~L~~i~lp~-~-l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~-~~~L~~l  208 (401)
T 4fdw_A          137 IAKVVLNEG--LKSIGDMAFFN--STVQEIVFPS-T-LEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFV-YAGIEEV  208 (401)
T ss_dssp             CSEEECCTT--CCEECTTTTTT--CCCCEEECCT-T-CCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTT-TCCCSEE
T ss_pred             ccEEEeCCC--ccEECHHhcCC--CCceEEEeCC-C-ccEehHHHhhCcccCCeeecCCCc-ceEechhhEe-ecccCEE
Confidence            455554432  33333333333  3688888876 3 66676555  78889999998764 445554  44 5788998


Q ss_pred             EeeCCCCcccCh-hhcCCCCCCEEeccCCCCCCCCccc-cCCCCCCCEEeeeCCCCCCccc-hhccCCCCCceeeccccc
Q 013724          322 FLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNGCSILQRLN-FDIWSILPLVLTTFIYVY  398 (437)
Q Consensus       322 ~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n~~l~~LP~~-l~~L~~L~~L~Ls~c~~l~~lP-~~l~~L~~L~~L~~~~~~  398 (437)
                      .|.. .++.|+. .|.+|++|+.+.|.++  +..++.. +.+ .+|+.+.|..  .+..++ ..|.++.+|+.+.+....
T Consensus       209 ~lp~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~  282 (401)
T 4fdw_A          209 LLPV-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGST  282 (401)
T ss_dssp             ECCT-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSC
T ss_pred             EeCC-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCcc
Confidence            8874 4777754 5778889999998764  5666654 444 7899999954  356664 568888999998874432


Q ss_pred             ch---hhccccccCCCcccccccccCCC
Q 013724          399 KF---FVETSAASGDDWKSAFDAAADGP  423 (437)
Q Consensus       399 ~~---~~~~~~~~~~~~~~l~~~~~s~~  423 (437)
                      ..   ...........+..|+.+.....
T Consensus       283 ~~~~~~~~I~~~aF~~c~~L~~l~l~~~  310 (401)
T 4fdw_A          283 FNDDPEAMIHPYCLEGCPKLARFEIPES  310 (401)
T ss_dssp             CCCCTTCEECTTTTTTCTTCCEECCCTT
T ss_pred             ccCCcccEECHHHhhCCccCCeEEeCCc
Confidence            21   01122334556677777766643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.20  E-value=0.037  Score=54.25  Aligned_cols=119  Identities=11%  Similarity=0.203  Sum_probs=76.0

Q ss_pred             ccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCC
Q 013724          268 HLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYKLL  342 (437)
Q Consensus       268 ~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~  342 (437)
                      .+.+|+.+.+..+  +..++...  .+..|+.+.+..+  +..++.  +.++.+|+.+.+.. .+..++. .+..|.+|+
T Consensus       215 ~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          215 YGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCC
T ss_pred             cccccceeeeccc--eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccc-cceeccccccccccccc
Confidence            3455666666543  34444433  6677888777653  444443  66777888887754 3555554 567788888


Q ss_pred             EEeccCCCCCCCCc-cccCCCCCCCEEeeeCCCCCCccch-hccCCCCCceeec
Q 013724          343 HLDLEDCKSLKSLP-SGLCKLKSLKYLTLNGCSILQRLNF-DIWSILPLVLTTF  394 (437)
Q Consensus       343 ~L~L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP~-~l~~L~~L~~L~~  394 (437)
                      .+.+.++. +..++ ..+.+|++|+.+.|..  .+..|.. .|.++.+|+.+.+
T Consensus       290 ~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          290 KVVMDNSA-IETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             EEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred             cccccccc-cceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence            88887655 56665 3467788888888854  2556653 4677777777664

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.02  E-value=0.02  Score=56.67  Aligned_cols=119  Identities=13%  Similarity=0.171  Sum_probs=83.8

Q ss_pred             ccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCcccCh-hhcCCCC
Q 013724          266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYK  340 (437)
Q Consensus       266 ~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~  340 (437)
                      +..+..|+.+.+..+.  ..++...  .+..|+.+.+....    ++.  +..+.+|+.+.+..+ ++.++. .+..|.+
T Consensus       249 f~~~~~l~~~~~~~~~--~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~  321 (394)
T 4fs7_A          249 FYGCTDLESISIQNNK--LRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTS  321 (394)
T ss_dssp             TTTCSSCCEEEECCTT--CEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTT
T ss_pred             ccccccceeEEcCCCc--ceeeccccccccccceeccCcee----eccccccccccccccccccc-cceechhhhcCCCC
Confidence            4457788888887653  3444433  77788887776532    343  777888999888754 666754 5778899


Q ss_pred             CCEEeccCCCCCCCCc-cccCCCCCCCEEeeeCCCCCCccc-hhccCCCCCceeecc
Q 013724          341 LLHLDLEDCKSLKSLP-SGLCKLKSLKYLTLNGCSILQRLN-FDIWSILPLVLTTFI  395 (437)
Q Consensus       341 L~~L~L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP-~~l~~L~~L~~L~~~  395 (437)
                      |+.++|.++  +..++ ..+.+|++|+.+++..+  +..++ ..|.++.+|+.+.+.
T Consensus       322 L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          322 LVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             CCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEE
T ss_pred             CCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEEC
Confidence            999988643  56665 45788899999988654  56665 457888888888763

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.00  E-value=0.019  Score=56.98  Aligned_cols=99  Identities=9%  Similarity=0.218  Sum_probs=61.0

Q ss_pred             CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEEeccCCCCCCCCc-cccCCCCCCC
Q 013724          291 HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLP-SGLCKLKSLK  366 (437)
Q Consensus       291 ~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n~~l~~LP-~~l~~L~~L~  366 (437)
                      .+..|+.+.+..+  ...++.  +.++.+|+.+.+. +.++.++. .|..|.+|+.+.|.++  ++.+. ..+.+|++|+
T Consensus       263 ~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          263 SCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCC
T ss_pred             ecccccEEecccc--cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCC
Confidence            5667777777543  223333  6667777777774 45556654 4666777777777543  45554 3467777777


Q ss_pred             EEeeeCCCCCCccc-hhccCCCCCceeeccc
Q 013724          367 YLTLNGCSILQRLN-FDIWSILPLVLTTFIY  396 (437)
Q Consensus       367 ~L~Ls~c~~l~~lP-~~l~~L~~L~~L~~~~  396 (437)
                      .+.|..+  +..+. ..|.++.+|+.+.+..
T Consensus       338 ~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          338 RIAIPSS--VTKIPESAFSNCTALNNIEYSG  366 (394)
T ss_dssp             EEEECTT--CCBCCGGGGTTCTTCCEEEESS
T ss_pred             EEEECcc--cCEEhHhHhhCCCCCCEEEECC
Confidence            7777532  45554 3567777777776643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.89  E-value=0.01  Score=49.67  Aligned_cols=34  Identities=24%  Similarity=0.414  Sum_probs=15.3

Q ss_pred             CCCEEEeeCCCCcccChh-hcCCCCCCEEeccCCC
Q 013724          317 NIEEMFLNGTAIEELPSS-IECLYKLLHLDLEDCK  350 (437)
Q Consensus       317 ~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~L~~n~  350 (437)
                      +|+.|+|++|.|+.||.. +..+++|+.|+|.+|.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            344445554444444432 3334444444444443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.58  E-value=0.03  Score=54.97  Aligned_cols=107  Identities=19%  Similarity=0.260  Sum_probs=81.7

Q ss_pred             ccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCcccCh-hhcCCCC
Q 013724          266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYK  340 (437)
Q Consensus       266 ~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~  340 (437)
                      +..+..|+.+.+..+  +..+....  .+..|+.+.+..+  +..++.  |..+.+|+.+.+.++.++.|+. .+.+|.+
T Consensus       236 f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~  311 (379)
T 4h09_A          236 FYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK  311 (379)
T ss_dssp             TTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred             ccCCccceEEEcCCC--ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence            345778888888765  56666555  7889999999753  555654  8889999999999999998864 6889999


Q ss_pred             CCEEeccCCCCCCCCcc-ccCCCCCCCEEeeeCCCCCCccc
Q 013724          341 LLHLDLEDCKSLKSLPS-GLCKLKSLKYLTLNGCSILQRLN  380 (437)
Q Consensus       341 L~~L~L~~n~~l~~LP~-~l~~L~~L~~L~Ls~c~~l~~lP  380 (437)
                      |+.+.|..+  ++.++. .+.+|++|+.+.+..+  +..+.
T Consensus       312 L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~~--v~~I~  348 (379)
T 4h09_A          312 LSSVTLPTA--LKTIQVYAFKNCKALSTISYPKS--ITLIE  348 (379)
T ss_dssp             CCEEECCTT--CCEECTTTTTTCTTCCCCCCCTT--CCEEC
T ss_pred             CCEEEcCcc--ccEEHHHHhhCCCCCCEEEECCc--cCEEc
Confidence            999999753  666654 5788999998888542  44443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.36  E-value=0.011  Score=53.37  Aligned_cols=80  Identities=10%  Similarity=0.185  Sum_probs=39.5

Q ss_pred             CceEEEeccCCCCCCCc-----CccC-CCCCccEEeeeCCCCCCC----CCC-CCCCCCCCEEEeeCCCCc-----ccCh
Q 013724          270 NTLVVLNLRDCKSLKSL-----PAGI-HLEFLKELDLSGCSKLKR----LPD-ISSAANIEEMFLNGTAIE-----ELPS  333 (437)
Q Consensus       270 ~~L~~L~Ls~n~~l~~l-----p~~~-~l~~L~~L~Ls~n~~~~~----lp~-l~~l~~L~~L~Ls~n~l~-----~lp~  333 (437)
                      +.|+.|+|++|+.++.-     -..+ .-+.|+.|+|++|.+...    +-+ +..-+.|+.|+|+.|.|.     .|-.
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            46777788765224321     1111 335667777776653211    111 223455666666666665     1223


Q ss_pred             hhcCCCCCCEEeccCC
Q 013724          334 SIECLYKLLHLDLEDC  349 (437)
Q Consensus       334 ~i~~L~~L~~L~L~~n  349 (437)
                      .+..-+.|+.|+|++|
T Consensus       121 aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HTTTTCCCSEEECCCC
T ss_pred             HHhhCCceeEEECCCC
Confidence            3444455666666543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.80  E-value=0.0063  Score=54.86  Aligned_cols=105  Identities=21%  Similarity=0.207  Sum_probs=70.1

Q ss_pred             CCCCccEEeeeCCCCCCC-----CCC-CCCCCCCCEEEeeCCCCc-----ccChhhcCCCCCCEEeccCCCCCCC-----
Q 013724          291 HLEFLKELDLSGCSKLKR-----LPD-ISSAANIEEMFLNGTAIE-----ELPSSIECLYKLLHLDLEDCKSLKS-----  354 (437)
Q Consensus       291 ~l~~L~~L~Ls~n~~~~~-----lp~-l~~l~~L~~L~Ls~n~l~-----~lp~~i~~L~~L~~L~L~~n~~l~~-----  354 (437)
                      .-+.|+.|+|++|+.++.     +-+ +..-..|+.|+|++|.|.     .|-..+..-+.|+.|+|+.|. ++.     
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~a  117 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLAR  117 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHHH
Confidence            346788999987633432     112 555678999999999887     244456666889999999988 442     


Q ss_pred             CccccCCCCCCCEEeeeCCC--CCC-----ccchhccCCCCCceeeccc
Q 013724          355 LPSGLCKLKSLKYLTLNGCS--ILQ-----RLNFDIWSILPLVLTTFIY  396 (437)
Q Consensus       355 LP~~l~~L~~L~~L~Ls~c~--~l~-----~lP~~l~~L~~L~~L~~~~  396 (437)
                      |-+.+..-+.|++|+|++|.  .++     .+.+.+..=++|..|++..
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~  166 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  166 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence            33456666779999998653  344     2445555557788887643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.73  E-value=0.045  Score=54.15  Aligned_cols=119  Identities=13%  Similarity=0.236  Sum_probs=84.6

Q ss_pred             ccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCcccCh-hhcCCCC
Q 013724          266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYK  340 (437)
Q Consensus       266 ~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~  340 (437)
                      +..+..|+.+.+..+.  ..+....  .+..|+.+.+..  .+..+++  |.++.+|+.+.|.. .++.|.. .|.+|.+
T Consensus       261 F~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTT
T ss_pred             eeecccccEEeccccc--ceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCC
Confidence            4567888888887653  4555544  889999999974  3566665  88899999999976 4777754 6889999


Q ss_pred             CCEEeccCCCCCCCCc-cccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeec
Q 013724          341 LLHLDLEDCKSLKSLP-SGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTF  394 (437)
Q Consensus       341 L~~L~L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~  394 (437)
                      |+.+.|..+  +..++ ..+.+|++|+.+++.++..  . -..+.....|+.+.+
T Consensus       336 L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~--~-~~~~~~~~~L~~i~i  385 (394)
T 4gt6_A          336 LERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRS--Q-WNAISTDSGLQNLPV  385 (394)
T ss_dssp             CCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHH--H-HHTCBCCCCC-----
T ss_pred             CCEEEECcc--cCEEhHhHhhCCCCCCEEEECCcee--e-hhhhhccCCCCEEEe
Confidence            999999653  66775 4589999999999987532  1 234555666776654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.63  E-value=0.2  Score=49.32  Aligned_cols=121  Identities=12%  Similarity=0.157  Sum_probs=67.9

Q ss_pred             ccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCC---------------
Q 013724          266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGT---------------  326 (437)
Q Consensus       266 ~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n---------------  326 (437)
                      +.++.+|+.+.|..+  ++.++...  .+.+|+.++|..+  +..++.  |.++.+|+.+.+..+               
T Consensus        67 F~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~  142 (394)
T 4fs7_A           67 FQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFK  142 (394)
T ss_dssp             TTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCS
T ss_pred             hhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCceeeecceeeeccccc
Confidence            445778888888643  56666554  7788888888653  444443  666666666554322               


Q ss_pred             ------CCccc-ChhhcCCCCCCEEeccCCCCCCCCcc-ccCCCCCCCEEeeeCCCCCCccc-hhccCCCCCceeec
Q 013724          327 ------AIEEL-PSSIECLYKLLHLDLEDCKSLKSLPS-GLCKLKSLKYLTLNGCSILQRLN-FDIWSILPLVLTTF  394 (437)
Q Consensus       327 ------~l~~l-p~~i~~L~~L~~L~L~~n~~l~~LP~-~l~~L~~L~~L~Ls~c~~l~~lP-~~l~~L~~L~~L~~  394 (437)
                            .+..+ ...+..+++|+.+.+.++  +..++. .+.++++|+.+++..+  +..++ ..+.+...|+.+.+
T Consensus       143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~  215 (394)
T 4fs7_A          143 EITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEF  215 (394)
T ss_dssp             EEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCC
T ss_pred             ccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeec
Confidence                  11111 123556677777776543  233433 3566677777766543  34443 23555555655543

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=94.10  E-value=0.029  Score=45.65  Aligned_cols=63  Identities=6%  Similarity=-0.084  Sum_probs=47.1

Q ss_pred             CCCceeeccCCCcccCchHHHHHHHHhcCCceEEecCCCchHHHHHHHHHhcceEEEEecCccccccccHhhHHhhhh
Q 013724          116 SYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQ  193 (437)
Q Consensus       116 ~~~dvf~sf~g~d~r~~f~~~l~~~L~~~g~~~~~~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wcl~EL~~il~  193 (437)
                      +.|.|||||..+|.+    +.|...|...|+..- .          +.|+.+...|+..++.-..|.||..|+....+
T Consensus         3 ~~~~lFISh~~~d~~----~~L~~~l~~~~f~~~-~----------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~   65 (111)
T 1eiw_A            3 AEIRLYITEGEVEDY----RVFLERLEQSGLEWR-P----------ATPEDADAVIVLAGLWGTRRDEILGAVDLARK   65 (111)
T ss_dssp             CCEEEEECCCCSHHH----HHHHHHHHHHCSCEE-E----------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTT
T ss_pred             ceEEEEEecccHhHH----HHHHHHHhCCCCeee-c----------CccccCCEEEEEeCCCcCCChHHHHHHHHHHH
Confidence            478999999999933    344444445566542 2          67889999999999999999999999965443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.80  E-value=0.099  Score=43.50  Aligned_cols=53  Identities=21%  Similarity=0.268  Sum_probs=40.0

Q ss_pred             EEeccCCCCCC--CcCccCCCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCc
Q 013724          274 VLNLRDCKSLK--SLPAGIHLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIE  329 (437)
Q Consensus       274 ~L~Ls~n~~l~--~lp~~~~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~  329 (437)
                      .++.+++. ++  .+|..+ -++|+.|+|++|.+. .+|.  |..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~-L~~~~vP~~l-p~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRG-LTWASLPTAF-PVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSC-CCTTTSCSCC-CTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCC-CccccCCCCC-CcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence            66777776 65  777654 346899999998644 4554  788999999999999775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	437
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-04
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 1e-07
 Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 9/131 (6%)

Query: 242 WRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLS 301
               L E  + A  I   +P    +   N  +  N  +           +L+ L  L L 
Sbjct: 261 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI-----SPISNLKNLTYLTLY 315

Query: 302 GCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCK 361
               +  +  +SS   ++ +F     + ++ S +  L  +  L     + +  L   L  
Sbjct: 316 FN-NISDISPVSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSAGHNQ-ISDLTP-LAN 371

Query: 362 LKSLKYLTLNG 372
           L  +  L LN 
Sbjct: 372 LTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 9e-04
 Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 27/136 (19%)

Query: 262 NPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEM 321
           +      L  L  L+L + + + +L     L  L EL L    ++  +  ++    +  +
Sbjct: 233 DIGTLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGAN-QISNISPLAGLTALTNL 290

Query: 322 F----------------------LNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGL 359
                                  L    I ++   +  L KL  L   + K +  + S L
Sbjct: 291 ELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNK-VSDVSS-L 347

Query: 360 CKLKSLKYLTLNGCSI 375
             L ++ +L+     I
Sbjct: 348 ANLTNINWLSAGHNQI 363

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 291 HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCK 350
               L+EL++S   KL  LP  +    +E +  +   + E+P   +    L  L +E   
Sbjct: 282 LPPSLEELNVSNN-KLIELP--ALPPRLERLIASFNHLAEVPELPQ---NLKQLHVEYNP 335

Query: 351 SLKSLPSGLCKLKSLK 366
            L+  P     ++ L+
Sbjct: 336 -LREFPDIPESVEDLR 350

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 5/118 (4%)

Query: 274 VLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPS 333
           VL+L     L  L     L  +  LDLS        P +++   +E +  +  A+E +  
Sbjct: 2   VLHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 334 SIECLYKLLHLDLEDCK-SLKSLPSGLCKLKSLKYLTLNGCSI--LQRLNFDIWSILP 388
                 +L  L L + +    +    L     L  L L G S+   + +   +  +LP
Sbjct: 61  VANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 6e-05
 Identities = 13/80 (16%), Positives = 34/80 (42%), Gaps = 1/80 (1%)

Query: 298 LDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCK-SLKSLP 356
           LDL+G +    +     +  +       + +++  +     +++ H+DL +    + +L 
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH 64

Query: 357 SGLCKLKSLKYLTLNGCSIL 376
             L +   L+ L+L G  + 
Sbjct: 65  GILSQCSKLQNLSLEGLRLS 84

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 23/151 (15%), Positives = 41/151 (27%), Gaps = 24/151 (15%)

Query: 251 ISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLP 310
           ++  N+         SQ +   +          + L        ++ +DLS         
Sbjct: 7   LTGKNLHPDVTGRLLSQGV---IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE---- 59

Query: 311 DISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTL 370
                            +  L   +    KL +L LE  +    + + L K  +L  L L
Sbjct: 60  -----------------VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 102

Query: 371 NGCSILQRLNFDIWSILPLVLTTFIYVYKFF 401
           +GCS                L      + F 
Sbjct: 103 SGCSGFSEFALQTLLSSCSRLDELNLSWCFD 133

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 8/94 (8%)

Query: 126 SEDTRDNFTSHLYSAL--SQKSIETFINRGD-----EISQSLVDAIEASAISLIIFSEGY 178
           SE       + +   L       +  +++ D      I  +++D+IE S  ++ + SE +
Sbjct: 13  SERDAYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENF 72

Query: 179 ASSRWFFDKLVKIL-QCKRVYGQIVLPVFYGVDP 211
             S W   +L     +         + +      
Sbjct: 73  VKSEWCKYELDFSHFRLFDENNDAAILILLEPIE 106

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 317 NIEEMFLNGTAI--EELPSSIECLYKLLHLDLEDCK----SLKSLPSGLCKLKSLKYLTL 370
           +I+ + +    +        +  L +   + L+DC       K + S L    +L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 371 NGCSI 375
               +
Sbjct: 63  RSNEL 67

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 7e-04
 Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 25/99 (25%)

Query: 279 DC--KSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIE 336
            C    L+ +P  +  +    LDL    K+  +                          +
Sbjct: 16  QCSDLGLEKVPKDLPPD-TALLDLQNN-KITEIK---------------------DGDFK 52

Query: 337 CLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI 375
            L  L  L L + K  K  P     L  L+ L L+   +
Sbjct: 53  NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 306 LKRLPDISS--AANIEEMFLNGT--AIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCK 361
           ++   +  S  A   E++ L+G    IE++ +++  L    HL L     ++ + S L  
Sbjct: 11  IRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKISS-LSG 68

Query: 362 LKSLKYLTLNGCSILQRLNFDIWSIL 387
           +++L+ L+L    I +  N D  +  
Sbjct: 69  MENLRILSLGRNLIKKIENLDAVADT 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	437
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.49
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.48
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.43
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.43
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.4
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.37
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.35
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.34
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.33
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.32
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.31
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.3
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.29
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.27
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.26
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.23
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.2
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.2
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.19
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.16
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.16
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.1
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.08
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.07
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.94
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.92
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.86
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.84
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.71
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.55
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.42
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.84
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.74
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.63
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.57
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.48
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.93
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.92
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.08
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.98

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.1e-14  Score=126.83  Aligned_cols=94  Identities=14%  Similarity=0.210  Sum_probs=83.4

Q ss_pred             CCCCceeeccCCCcccCchH-HHHHHHHhcCCceEEe-----cCCCchHHHHHHHHHhcceEEEEecCccccccccHhhH
Q 013724          115 DSYEGVPTAIPSEDTRDNFT-SHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKL  188 (437)
Q Consensus       115 ~~~~dvf~sf~g~d~r~~f~-~~l~~~L~~~g~~~~~-----~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wcl~EL  188 (437)
                      .++|||||||+++|.  .|+ ..|...|+..|+++|+     ..|+.+.++|.++|++|+..|+|+|++|..|.||..|+
T Consensus        10 ~~~yDvFisys~~D~--~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~~E~   87 (161)
T d1fyva_          10 NLQFHAFISYSGHDS--FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHYEL   87 (161)
T ss_dssp             CCCEEEEEECCGGGH--HHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHHHHH
T ss_pred             CCeeEEEEecChhHH--HHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHHHHHH
Confidence            468999999999998  455 6799999999999999     57999999999999999999999999999999999999


Q ss_pred             Hhhhhhc-cccCeEEEeeeecCC
Q 013724          189 VKILQCK-RVYGQIVLPVFYGVD  210 (437)
Q Consensus       189 ~~il~c~-~~~~~~vlPiFy~Vd  210 (437)
                      ...+... ..+...++||+++--
T Consensus        88 ~~a~~~~~~~~~~~lIpV~l~~~  110 (161)
T d1fyva_          88 YFAHHNLFHEGSNSLILILLEPI  110 (161)
T ss_dssp             HTTSCCCSCSSCSSEEEEESSCC
T ss_pred             HHHHHHHHHcCCCceeEEEEecC
Confidence            9888765 345568999998643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.5e-13  Score=128.81  Aligned_cols=145  Identities=23%  Similarity=0.252  Sum_probs=109.3

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEE
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMF  322 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~  322 (437)
                      .|++|+|++|.... .+   .+..+++|+.|+|++|. +..++..+ .+++|+.|++++|......+. +..+.+|+.|+
T Consensus        56 ~L~~L~L~~N~l~~-l~---~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~  130 (266)
T d1p9ag_          56 RLTQLNLDRAELTK-LQ---VDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY  130 (266)
T ss_dssp             TCCEEECTTSCCCE-EE---CCSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred             cccccccccccccc-cc---ccccccccccccccccc-ccccccccccccccccccccccccceeecccccccccccccc
Confidence            47778887775432 22   13457888888888887 55666666 788888888888765554444 67788888888


Q ss_pred             eeCCCCcccChh-hcCCCCCCEEeccCCCCCCCCc-cccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccc
Q 013724          323 LNGTAIEELPSS-IECLYKLLHLDLEDCKSLKSLP-SGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIY  396 (437)
Q Consensus       323 Ls~n~l~~lp~~-i~~L~~L~~L~L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~  396 (437)
                      +++|.+..+|.. +..+++|+.|++++|+ +..+| ..+..+++|++|+|++|. +..+|..+..+.+|+.|++.+
T Consensus       131 l~~n~l~~l~~~~~~~l~~l~~l~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~  204 (266)
T d1p9ag_         131 LKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHG  204 (266)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCS
T ss_pred             ccccccceeccccccccccchhccccccc-ccccCccccccccccceeecccCC-CcccChhHCCCCCCCEEEecC
Confidence            888888877654 4668899999999988 55554 557889999999999876 558998888899999988864

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.46  E-value=2.3e-14  Score=137.27  Aligned_cols=135  Identities=19%  Similarity=0.283  Sum_probs=97.0

Q ss_pred             hhhhhcccCcccCCCCCCccccccCceEEEeccC-CCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEE
Q 013724          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRD-CKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMF  322 (437)
Q Consensus       246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~  322 (437)
                      ++.|+|++++..+....|..++++++|++|+|++ |.+.+.+|..+ .|++|++|+|++|.+.+..+. +..+.+|+.++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence            5667777776665545556677788888888876 55566788777 888888888888876665555 77778888888


Q ss_pred             eeCCCCc-ccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCC-CEEeeeCCCCCCccc
Q 013724          323 LNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSL-KYLTLNGCSILQRLN  380 (437)
Q Consensus       323 Ls~n~l~-~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L-~~L~Ls~c~~l~~lP  380 (437)
                      ++.|.+. .+|..++.++.|+.+++++|...+.+|..+..+..+ +.+++++|...+..|
T Consensus       132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~  191 (313)
T d1ogqa_         132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP  191 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred             cccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccc
Confidence            8887766 667778888888888888887666777777666665 566666554433333

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.3e-13  Score=120.08  Aligned_cols=126  Identities=20%  Similarity=0.283  Sum_probs=106.1

Q ss_pred             cccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhh-cCCCCCCEE
Q 013724          267 QHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHL  344 (437)
Q Consensus       267 ~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i-~~L~~L~~L  344 (437)
                      .++.+|++|+|++|+ ++.++... .+++|+.|+|++|. +..++.+..+++|++|++++|.|+.+|+.+ ..+++|+.|
T Consensus        15 ~n~~~lr~L~L~~n~-I~~i~~~~~~l~~L~~L~Ls~N~-i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          15 TNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             ECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCcCcCcEEECCCCC-CCccCccccccccCCEEECCCCC-CCccCCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            356789999999998 88888665 89999999999986 456777999999999999999999998764 679999999


Q ss_pred             eccCCCCCCCCcc--ccCCCCCCCEEeeeCCCCCCccc----hhccCCCCCceeeccc
Q 013724          345 DLEDCKSLKSLPS--GLCKLKSLKYLTLNGCSILQRLN----FDIWSILPLVLTTFIY  396 (437)
Q Consensus       345 ~L~~n~~l~~LP~--~l~~L~~L~~L~Ls~c~~l~~lP----~~l~~L~~L~~L~~~~  396 (437)
                      ++++|. +..+++  .+..+++|++|++++|+. ..+|    ..+..+++|+.|+...
T Consensus        93 ~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i-~~~~~~r~~~i~~lp~L~~LD~~~  148 (162)
T d1a9na_          93 ILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQK  148 (162)
T ss_dssp             ECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             eecccc-ccccccccccccccccchhhcCCCcc-ccccchHHHHHHHCCCcCeeCCCC
Confidence            999998 777764  578999999999999874 4444    3578899999998543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.1e-13  Score=123.40  Aligned_cols=177  Identities=18%  Similarity=0.038  Sum_probs=138.4

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEee
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN  324 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls  324 (437)
                      .++.|+|++|.... .+ +..+..+++|++|+|++|. ++.+|....+++|+.|+|++|++....+.+..+++|+.|+++
T Consensus        32 ~l~~L~Ls~N~i~~-l~-~~~f~~l~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          32 DTTILHLSENLLYT-FS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TCCEEECTTSCCSE-EE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred             CCCEEECcCCcCCC-cC-HHHhhcccccccccccccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence            57888998876543 22 2345678999999999997 777876558899999999998765544448889999999999


Q ss_pred             CCCCcccCh-hhcCCCCCCEEeccCCCCCCCCcc-ccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhh
Q 013724          325 GTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPS-GLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFV  402 (437)
Q Consensus       325 ~n~l~~lp~-~i~~L~~L~~L~L~~n~~l~~LP~-~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~  402 (437)
                      +|.+..++. .+..+.+|+.|++.+|. +..+|. .+..+++|+.|++++|...+-.+..+..+++|+.|++.++...  
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~--  185 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY--  185 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC--
T ss_pred             ccccceeeccccccccccccccccccc-cceeccccccccccchhcccccccccccCccccccccccceeecccCCCc--
Confidence            999987654 56788999999999988 666664 4678999999999998766555667899999999998665432  


Q ss_pred             ccccccCCCcccccccccCCCCCCcc
Q 013724          403 ETSAASGDDWKSAFDAAADGPVKPSQ  428 (437)
Q Consensus       403 ~~~~~~~~~~~~l~~~~~s~~~~~~~  428 (437)
                       ..+.+......++.+..+++.+.|.
T Consensus       186 -~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         186 -TIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             -CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             -ccChhHCCCCCCCEEEecCCCCCCC
Confidence             4455556678889999999988764

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.3e-14  Score=122.21  Aligned_cols=95  Identities=14%  Similarity=0.171  Sum_probs=80.7

Q ss_pred             CCCCceeeccCCCcccCchH-HHHHHHHhc--CCceEEe-----cCCCchHHHHHHHHHhcceEEEEecCccccccccHh
Q 013724          115 DSYEGVPTAIPSEDTRDNFT-SHLYSALSQ--KSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFD  186 (437)
Q Consensus       115 ~~~~dvf~sf~g~d~r~~f~-~~l~~~L~~--~g~~~~~-----~~g~~i~~~l~~~i~~S~~~i~i~S~~~~sS~Wcl~  186 (437)
                      +++|||||||+++|.  .|+ .+|...|++  .|+++|+     ..|+.+.++|.++|+.|+..|+|+|++|..|.||..
T Consensus         3 ~~~YDvFiSys~~D~--~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~~   80 (149)
T d1fyxa_           3 NICYDAFVSYSERDA--YWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKY   80 (149)
T ss_dssp             SCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHH
T ss_pred             CCEEEEEEECchhhH--HHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccchHH
Confidence            468999999999997  454 578999976  4899998     679999999999999999999999999999999999


Q ss_pred             hHHhhhh-hccccCeEEEeeeecCCC
Q 013724          187 KLVKILQ-CKRVYGQIVLPVFYGVDP  211 (437)
Q Consensus       187 EL~~il~-c~~~~~~~vlPiFy~Vdp  211 (437)
                      |+...+. ..+.++..++||+++..+
T Consensus        81 E~~~a~~~~~~~~~~~iIpV~l~~~~  106 (149)
T d1fyxa_          81 ELDFSHFRLFDENNDAAILILLEPIE  106 (149)
T ss_dssp             HSCCSCCTTCGGGTTCCEEEESSCCC
T ss_pred             HHHHHHHHHHHcCCceEEEEEeccCc
Confidence            9976544 335567789999986443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.40  E-value=2e-13  Score=130.64  Aligned_cols=86  Identities=12%  Similarity=-0.041  Sum_probs=61.9

Q ss_pred             hcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCccc
Q 013724          335 IECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKS  414 (437)
Q Consensus       335 i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~  414 (437)
                      ++.+++|+.|++.+|...+. +..++.+++|+.|+|++|...+.+|..+++|++|+.|++.++...  ...|. ...++.
T Consensus       217 ~~~~~~l~~l~~~~~~l~~~-~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~--g~iP~-~~~L~~  292 (313)
T d1ogqa_         217 FGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC--GEIPQ-GGNLQR  292 (313)
T ss_dssp             CCTTSCCSEEECCSSEECCB-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE--EECCC-STTGGG
T ss_pred             cccccccccccccccccccc-ccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc--ccCCC-cccCCC
Confidence            34455666777777664333 446788899999999999988899999999999999998775432  23343 345677


Q ss_pred             ccccccCCCC
Q 013724          415 AFDAAADGPV  424 (437)
Q Consensus       415 l~~~~~s~~~  424 (437)
                      +..+...++.
T Consensus       293 L~~l~l~~N~  302 (313)
T d1ogqa_         293 FDVSAYANNK  302 (313)
T ss_dssp             SCGGGTCSSS
T ss_pred             CCHHHhCCCc
Confidence            7777766664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.37  E-value=1.6e-12  Score=117.50  Aligned_cols=142  Identities=20%  Similarity=0.196  Sum_probs=73.1

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEee
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN  324 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls  324 (437)
                      .|+.++++.|......    .+..+++|++|++++|. ++.++....+++|++|++++|. +..+|.+..+++|+.|+++
T Consensus        47 ~L~~L~l~~~~i~~l~----~l~~l~~L~~L~L~~n~-i~~l~~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCCT----TGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCch----hHhhCCCCCEEeCCCcc-ccCccccccCcccccccccccc-ccccccccccccccccccc
Confidence            4455555554432211    13445666666666665 4444432355666666666654 3344555556666666666


Q ss_pred             CCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724          325 GTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV  397 (437)
Q Consensus       325 ~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~  397 (437)
                      +|.+..++ .+..+++|+.+++++|. +..++ .+..+++|+.+++++|.. ..++ .+.++++|+.|++.+|
T Consensus       121 ~~~~~~~~-~l~~l~~l~~l~~~~n~-l~~~~-~~~~l~~L~~l~l~~n~l-~~i~-~l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         121 HNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-VLSRLTKLDTLSLEDNQI-SDIV-PLAGLTKLQNLYLSKN  188 (210)
T ss_dssp             TSCCCCCG-GGGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCC-CCCG-GGTTCTTCCEEECCSS
T ss_pred             cccccccc-ccccccccccccccccc-ccccc-cccccccccccccccccc-cccc-cccCCCCCCEEECCCC
Confidence            66555443 34555555666655555 33332 244555555666655543 2333 2555555555555443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.35  E-value=3e-12  Score=114.66  Aligned_cols=143  Identities=15%  Similarity=0.209  Sum_probs=98.9

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEee
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN  324 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls  324 (437)
                      .++.|++++|+... .   ..+..+++|++|++++|. +..++....+++|+.|++++|. ...++.+.++++|+.|+++
T Consensus        41 ~l~~L~l~~~~i~~-l---~~l~~l~nL~~L~Ls~N~-l~~~~~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~  114 (199)
T d2omxa2          41 QVTTLQADRLGIKS-I---DGVEYLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQ-IADITPLANLTNLTGLTLF  114 (199)
T ss_dssp             TCCEEECTTSCCCC-C---TTGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEECC
T ss_pred             CCCEEECCCCCCCC-c---cccccCCCcCcCcccccc-ccCcccccCCcccccccccccc-ccccccccccccccccccc
Confidence            45667777765432 1   125567888888888886 5556542277888888888775 4455667778888888888


Q ss_pred             CCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccccc
Q 013724          325 GTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVY  398 (437)
Q Consensus       325 ~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~  398 (437)
                      ++.+..++ .+..+++|+.|++++|. +..+| .+..+++|+.|++.+|. +..++ .++++++|+.|++.++.
T Consensus       115 ~~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~-~l~~~~~L~~L~l~~n~-l~~l~-~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         115 NNQITDID-PLKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLNFSSNQ-VTDLK-PLANLTTLERLDISSNK  183 (199)
T ss_dssp             SSCCCCCG-GGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCCEEECCSSC
T ss_pred             cccccccc-ccchhhhhHHhhhhhhh-hcccc-ccccccccccccccccc-ccCCc-cccCCCCCCEEECCCCC
Confidence            77776654 46777888888888877 55554 46778888888888765 34454 47778888888876653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=1.4e-12  Score=108.20  Aligned_cols=99  Identities=26%  Similarity=0.299  Sum_probs=71.9

Q ss_pred             EEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCC
Q 013724          273 VVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKS  351 (437)
Q Consensus       273 ~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~  351 (437)
                      ++|++++|+ ++.++..-.+++|++|++++|.+ ..+|. ++.+++|+.|++++|.|+.+| .++.+++|+.|++++|+ 
T Consensus         1 R~L~Ls~n~-l~~l~~l~~l~~L~~L~ls~N~l-~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~-   76 (124)
T d1dcea3           1 RVLHLAHKD-LTVLCHLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR-   76 (124)
T ss_dssp             SEEECTTSC-CSSCCCGGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC-
T ss_pred             CEEEcCCCC-CCCCcccccCCCCCEEECCCCcc-CcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCc-
Confidence            467788877 66666422777888888887754 45554 777888888888888888775 47788888888888877 


Q ss_pred             CCCCc--cccCCCCCCCEEeeeCCCC
Q 013724          352 LKSLP--SGLCKLKSLKYLTLNGCSI  375 (437)
Q Consensus       352 l~~LP--~~l~~L~~L~~L~Ls~c~~  375 (437)
                      +..+|  ..+..+++|++|++++|+.
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcC
Confidence            66555  3467778888888887764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=8.6e-12  Score=117.51  Aligned_cols=158  Identities=20%  Similarity=0.210  Sum_probs=115.4

Q ss_pred             ccCceEEEeccCCCCCCCcCcc-C-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCE
Q 013724          268 HLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPS-SIECLYKLLH  343 (437)
Q Consensus       268 ~l~~L~~L~Ls~n~~l~~lp~~-~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~  343 (437)
                      .+..+..+.+..+..+..++.. + .+++|++|++++|......+. +..+.+|+.+++++|.|+.+|+ .+..+++|+.
T Consensus        78 ~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~  157 (284)
T d1ozna_          78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH  157 (284)
T ss_dssp             TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhh
Confidence            3445555554444335555433 3 778899999998876544444 7778899999999999998864 5778899999


Q ss_pred             EeccCCCCCCCCc-cccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCcccccccccCC
Q 013724          344 LDLEDCKSLKSLP-SGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADG  422 (437)
Q Consensus       344 L~L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~  422 (437)
                      |++++|. +..+| ..+.++++|+.|++++|...+-.|..|..+++|+.|++..+...  ...+........++.+..++
T Consensus       158 L~l~~N~-l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~--~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         158 LFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS--ALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             EECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS--CCCHHHHTTCTTCCEEECCS
T ss_pred             cccccCc-ccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccc--cccccccccccccCEEEecC
Confidence            9999988 55554 56788999999999998877777888999999999988655433  23333445667788888888


Q ss_pred             CCCCcc
Q 013724          423 PVKPSQ  428 (437)
Q Consensus       423 ~~~~~~  428 (437)
                      +.+.+.
T Consensus       235 N~l~C~  240 (284)
T d1ozna_         235 NPWVCD  240 (284)
T ss_dssp             SCEECS
T ss_pred             CCCCCC
Confidence            877754

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.32  E-value=6.4e-12  Score=113.45  Aligned_cols=139  Identities=21%  Similarity=0.272  Sum_probs=84.9

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEee
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN  324 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls  324 (437)
                      .|+.|++++|.... .+   .+..+++|+.|++++|+ ++.+|....+++|+.|++++|.. ..++.+..+++|+.++++
T Consensus        69 ~L~~L~L~~n~i~~-l~---~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~~~~~-~~~~~l~~l~~l~~l~~~  142 (210)
T d1h6ta2          69 NVTKLFLNGNKLTD-IK---PLANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNGI-SDINGLVHLPQLESLYLG  142 (210)
T ss_dssp             TCCEEECCSSCCCC-CG---GGTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSCC-CCCGGGGGCTTCCEEECC
T ss_pred             CCCEEeCCCccccC-cc---ccccCcccccccccccc-ccccccccccccccccccccccc-cccccccccccccccccc
Confidence            46666666664332 11   13456677777777766 55565433667777777776643 344556666777777777


Q ss_pred             CCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeec
Q 013724          325 GTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTF  394 (437)
Q Consensus       325 ~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~  394 (437)
                      +|.++.++ .+..+++|+.|++++|+ +..++. +.++++|+.|++++|. +..+| .+..|++|+.|++
T Consensus       143 ~n~l~~~~-~~~~l~~L~~l~l~~n~-l~~i~~-l~~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~L  207 (210)
T d1h6ta2         143 NNKITDIT-VLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLEL  207 (210)
T ss_dssp             SSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEEE
T ss_pred             cccccccc-ccccccccccccccccc-cccccc-ccCCCCCCEEECCCCC-CCCCh-hhcCCCCCCEEEc
Confidence            77666543 35566777777777766 445543 6667777777777664 45565 4666777777665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.8e-12  Score=118.71  Aligned_cols=132  Identities=22%  Similarity=0.239  Sum_probs=111.8

Q ss_pred             ccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccC-hhhcCCC
Q 013724          264 SFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELP-SSIECLY  339 (437)
Q Consensus       264 ~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp-~~i~~L~  339 (437)
                      ..+..+++|++|++++|. +..++...  .+.+|+.+++++|.+....+. +..+++|+.|+|++|+|+.+| ..+..++
T Consensus        99 ~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~  177 (284)
T d1ozna_          99 ATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH  177 (284)
T ss_dssp             TTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             hhhcccccCCEEecCCcc-cccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcccc
Confidence            346678999999999998 55555444  788999999999876544444 888999999999999999885 4678899


Q ss_pred             CCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccc
Q 013724          340 KLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIY  396 (437)
Q Consensus       340 ~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~  396 (437)
                      +|+.|++.+|+..+..|..+.++++|++|++++|...+..|..++.+.+|+.|++.+
T Consensus       178 ~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred             ccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecC
Confidence            999999999996666688899999999999999988777778899999999999865

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.30  E-value=1.2e-11  Score=110.72  Aligned_cols=159  Identities=14%  Similarity=0.183  Sum_probs=109.8

Q ss_pred             cccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEec
Q 013724          267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDL  346 (437)
Q Consensus       267 ~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L  346 (437)
                      ..+.+|+.|++++|. +..++..-.+++|++|+|++|.+ ..++.+.++++|++|++++|.+..++. +.++++|+.|++
T Consensus        37 ~~l~~l~~L~l~~~~-i~~l~~l~~l~nL~~L~Ls~N~l-~~~~~l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l  113 (199)
T d2omxa2          37 TDLDQVTTLQADRLG-IKSIDGVEYLNNLTQINFSNNQL-TDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL  113 (199)
T ss_dssp             HHHTTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEC
T ss_pred             HHhcCCCEEECCCCC-CCCccccccCCCcCcCccccccc-cCcccccCCcccccccccccccccccc-cccccccccccc
Confidence            356788888888887 66665322788888888888754 445558888888888888888887764 778888888888


Q ss_pred             cCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCcccccccccCCCCCC
Q 013724          347 EDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       347 ~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                      ++|. ...+ ..+..+++|+.|++++|. +..+| .+..+++|+.|++.+|......    .....++++.+..+++.+.
T Consensus       114 ~~~~-~~~~-~~~~~l~~L~~L~l~~n~-l~~~~-~l~~~~~L~~L~l~~n~l~~l~----~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         114 FNNQ-ITDI-DPLKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLNFSSNQVTDLK----PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             CSSC-CCCC-GGGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCC
T ss_pred             cccc-cccc-cccchhhhhHHhhhhhhh-hcccc-cccccccccccccccccccCCc----cccCCCCCCEEECCCCCCC
Confidence            8877 3333 346778888888888875 44555 5777888888887665332211    2345677778888777665


Q ss_pred             cc-cccccccC
Q 013724          427 SQ-LLSFCIQL  436 (437)
Q Consensus       427 ~~-d~s~c~~l  436 (437)
                      .. .++.+.+|
T Consensus       186 ~i~~l~~L~~L  196 (199)
T d2omxa2         186 DISVLAKLTNL  196 (199)
T ss_dssp             CCGGGGGCTTC
T ss_pred             CCccccCCCCC
Confidence            43 24444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.29  E-value=9.1e-12  Score=110.76  Aligned_cols=108  Identities=23%  Similarity=0.247  Sum_probs=86.7

Q ss_pred             CceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEEe
Q 013724          270 NTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLD  345 (437)
Q Consensus       270 ~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~  345 (437)
                      +++++|+|++|.+...++...  .+++|+.|+|++|.+....+. +..+++|++|+|++|+|+.+|+ .|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            578899999998444454443  789999999999887766665 8889999999999999998865 578899999999


Q ss_pred             ccCCCCCCCCc-cccCCCCCCCEEeeeCCCCCCc
Q 013724          346 LEDCKSLKSLP-SGLCKLKSLKYLTLNGCSILQR  378 (437)
Q Consensus       346 L~~n~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~  378 (437)
                      |++|. +..+| ..+..+++|++|+|++|+....
T Consensus       109 L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_         109 LYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCSSC-CCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             cCCcc-ccccCHHHhcCCcccccccccccccccc
Confidence            99988 66665 4578899999999998876543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.27  E-value=1.2e-11  Score=109.87  Aligned_cols=122  Identities=17%  Similarity=0.153  Sum_probs=98.5

Q ss_pred             EEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCcccC-hhhcCCCCCCEEeccCC
Q 013724          273 VVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELP-SSIECLYKLLHLDLEDC  349 (437)
Q Consensus       273 ~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~lp-~~i~~L~~L~~L~L~~n  349 (437)
                      +.++.+++. ++.+|..+ .+++++|+|++|.+...++.  |.++++|+.|+|++|.+..++ ..+..+++|+.|+|++|
T Consensus        11 ~~v~Cs~~~-L~~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRG-LKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSC-CSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCC-cCccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            467888887 77888876 36899999999987665543  788999999999999999664 57788999999999999


Q ss_pred             CCCCCCc-cccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724          350 KSLKSLP-SGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV  397 (437)
Q Consensus       350 ~~l~~LP-~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~  397 (437)
                      + +..+| ..|.++++|++|+|++|.+.+--|..|..+.+|+.|++.+.
T Consensus        89 ~-l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          89 K-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             C-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             c-ccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccc
Confidence            8 66665 45789999999999997754444556889999999998653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=1.4e-11  Score=102.08  Aligned_cols=99  Identities=21%  Similarity=0.186  Sum_probs=86.0

Q ss_pred             cEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCC
Q 013724          296 KELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSI  375 (437)
Q Consensus       296 ~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~  375 (437)
                      |+|+|++|++ ..++.+..+++|++|++++|.|+.+|+.++.+++|+.|++++|. ++.+|. ++.+++|++|++++|. 
T Consensus         1 R~L~Ls~n~l-~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~~-~~~l~~L~~L~l~~N~-   76 (124)
T d1dcea3           1 RVLHLAHKDL-TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVDG-VANLPRLQELLLCNNR-   76 (124)
T ss_dssp             SEEECTTSCC-SSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSSC-
T ss_pred             CEEEcCCCCC-CCCcccccCCCCCEEECCCCccCcchhhhhhhhccccccccccc-ccccCc-cccccccCeEECCCCc-
Confidence            5899999865 57778999999999999999999999999999999999999998 788874 8999999999999976 


Q ss_pred             CCccc--hhccCCCCCceeeccccc
Q 013724          376 LQRLN--FDIWSILPLVLTTFIYVY  398 (437)
Q Consensus       376 l~~lP--~~l~~L~~L~~L~~~~~~  398 (437)
                      +..+|  ..+..+++|+.|++.+..
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCc
Confidence            44454  468889999999986544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.23  E-value=9.1e-11  Score=111.20  Aligned_cols=174  Identities=20%  Similarity=0.071  Sum_probs=100.9

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC------------
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD------------  311 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~------------  311 (437)
                      .++.|+|++|... ..+. ..+.++++|++|++++|......|..+ .++.|+.|++++|++. .+|.            
T Consensus        32 ~l~~L~Ls~N~i~-~l~~-~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~~~~l~~L~~~  108 (305)
T d1xkua_          32 DTALLDLQNNKIT-EIKD-GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVH  108 (305)
T ss_dssp             TCCEEECCSSCCC-CBCT-TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECC
T ss_pred             CCCEEECcCCcCC-CcCh-hHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccchhhhhhhhhcc
Confidence            4667777776543 2222 234567788888888887433334445 7788888888776432 2221            


Q ss_pred             -------------------------------------CCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCC
Q 013724          312 -------------------------------------ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKS  354 (437)
Q Consensus       312 -------------------------------------l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~  354 (437)
                                                           +..+++|+.+++++|.+..+|..+  +++|+.|++.+|.....
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~~~  186 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKV  186 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEE
T ss_pred             ccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCccc--CCccCEEECCCCcCCCC
Confidence                                                 112234444444444444443322  34555666665554445


Q ss_pred             CccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCcccccccccCCCCCC
Q 013724          355 LPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       355 LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                      .+..+..++.++.|++++|...+-.+..+..+++|+.|++.++...   ..+.....++.++.+..+.+.+.
T Consensus       187 ~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~---~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV---KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS---SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             ChhHhhccccccccccccccccccccccccccccceeeeccccccc---ccccccccccCCCEEECCCCccC
Confidence            5556667777777777776554444566677777777777665322   23445556677777777776555

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=5.9e-12  Score=109.30  Aligned_cols=121  Identities=15%  Similarity=0.165  Sum_probs=97.6

Q ss_pred             hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEee
Q 013724          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLN  324 (437)
Q Consensus       246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls  324 (437)
                      +++|+|++|.... .+  .....+++|+.|+|++|. +..++....+++|+.|+|++|.+....+. +..+++|+.|+++
T Consensus        20 lr~L~L~~n~I~~-i~--~~~~~l~~L~~L~Ls~N~-i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          20 DRELDLRGYKIPV-IE--NLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             CEEEECTTSCCCS-CC--CGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             CcEEECCCCCCCc-cC--ccccccccCCEEECCCCC-CCccCCcccCcchhhhhcccccccCCCccccccccccccceec
Confidence            5778999886543 32  345678999999999998 77786433899999999999976554444 5679999999999


Q ss_pred             CCCCcccCh--hhcCCCCCCEEeccCCCCCCCCcc----ccCCCCCCCEEeee
Q 013724          325 GTAIEELPS--SIECLYKLLHLDLEDCKSLKSLPS----GLCKLKSLKYLTLN  371 (437)
Q Consensus       325 ~n~l~~lp~--~i~~L~~L~~L~L~~n~~l~~LP~----~l~~L~~L~~L~Ls  371 (437)
                      +|.|+.++.  .+..+++|++|++++|+ +..+|.    .+..+++|+.||-.
T Consensus        96 ~N~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          96 NNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             SCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cccccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCCC
Confidence            999998764  68899999999999998 677764    47889999999843

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.20  E-value=4.1e-11  Score=109.00  Aligned_cols=126  Identities=25%  Similarity=0.357  Sum_probs=68.1

Q ss_pred             cccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccC--------------
Q 013724          267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELP--------------  332 (437)
Q Consensus       267 ~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp--------------  332 (437)
                      ..+++|+.|++++|. +..++....+++|++|++++|. .+.++.+.++++|+.|+++++.+..++              
T Consensus        60 ~~l~~L~~L~ls~n~-i~~~~~l~~l~~l~~l~~~~n~-~~~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~  137 (227)
T d1h6ua2          60 QYLNNLIGLELKDNQ-ITDLAPLKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD  137 (227)
T ss_dssp             GGCTTCCEEECCSSC-CCCCGGGTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECC
T ss_pred             hcCCCCcEeecCCce-eecccccccccccccccccccc-ccccccccccccccccccccccccccchhccccchhhhhch
Confidence            445555555555554 3333322244555555555443 223444444455555554443322111              


Q ss_pred             -------hhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccccc
Q 013724          333 -------SSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVY  398 (437)
Q Consensus       333 -------~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~  398 (437)
                             ..+..+++|+.|++.+|. +..++. ++++++|+.|++++|. +..+| .+.++++|+.|++.+|.
T Consensus       138 ~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~-l~~l~~L~~L~Ls~n~-l~~l~-~l~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         138 LNQITNISPLAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDNK-ISDIS-PLASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             SSCCCCCGGGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGGGCTTCCEEECTTSC
T ss_pred             hhhhchhhhhccccccccccccccc-cccchh-hcccccceecccCCCc-cCCCh-hhcCCCCCCEEECcCCc
Confidence                   124556677777777776 444433 6777777788877764 45565 36777777777776653

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=4e-11  Score=116.48  Aligned_cols=143  Identities=16%  Similarity=0.184  Sum_probs=99.6

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEee
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN  324 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls  324 (437)
                      .|+.+++.+|....    ...+..+++|+.|++.+|. +..++....+++|+.|++++|.+ ..++.+..++.++.+.+.
T Consensus       220 ~L~~L~l~~n~l~~----~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~~~~~l~~l~~~  293 (384)
T d2omza2         220 NLDELSLNGNQLKD----IGTLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGANQI-SNISPLAGLTALTNLELN  293 (384)
T ss_dssp             TCCEEECCSSCCCC----CGGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCC-CCCGGGTTCTTCSEEECC
T ss_pred             CCCEEECCCCCCCC----cchhhcccccchhccccCc-cCCCCcccccccCCEeeccCccc-CCCCcccccccccccccc
Confidence            56677777775432    1235668889999999887 55666544788899999988754 445556777777888887


Q ss_pred             CCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeeccccc
Q 013724          325 GTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVY  398 (437)
Q Consensus       325 ~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~  398 (437)
                      .|.++.++ .+..+++|+.|++++|+ +..++. +..+++|++|++++|. ++.+| .+.++++|+.|++.++.
T Consensus       294 ~n~l~~~~-~~~~~~~l~~L~ls~n~-l~~l~~-l~~l~~L~~L~L~~n~-l~~l~-~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         294 ENQLEDIS-PISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFANNK-VSDVS-SLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             SSCCSCCG-GGGGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCCEEECCSSC
T ss_pred             cccccccc-ccchhcccCeEECCCCC-CCCCcc-cccCCCCCEEECCCCC-CCCCh-hHcCCCCCCEEECCCCc
Confidence            77777654 36677778888887776 555543 6677778888887774 44565 57777778877775543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.16  E-value=1.9e-10  Score=108.91  Aligned_cols=175  Identities=17%  Similarity=0.153  Sum_probs=126.8

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCcc-----------------------------------
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-----------------------------------  289 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~-----------------------------------  289 (437)
                      .|+.|++++|......+  ..+..+++|+.|++++|+ ++.+|..                                   
T Consensus        56 ~L~~L~l~~n~~~~i~~--~~f~~l~~L~~L~l~~n~-l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~  132 (305)
T d1xkua_          56 NLHTLILINNKISKISP--GAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELG  132 (305)
T ss_dssp             TCCEEECCSSCCCCBCT--TTTTTCTTCCEEECCSSC-CSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECC
T ss_pred             cccccccccccccccch--hhhhCCCccCEecccCCc-cCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccc
Confidence            57889999887664332  346778999999999886 4333311                                   


Q ss_pred             -------------C-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCc-ccChhhcCCCCCCEEeccCCCCCCC
Q 013724          290 -------------I-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKS  354 (437)
Q Consensus       290 -------------~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~L~~n~~l~~  354 (437)
                                   + .+++|+.+++++|.+. .+|. ..+++|+.|++++|.+. ..+..+..++.++.|++++|. +..
T Consensus       133 ~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~-l~~  209 (305)
T d1xkua_         133 TNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISA  209 (305)
T ss_dssp             SSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCS-SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCE
T ss_pred             cccccccCCCccccccccccCccccccCCcc-ccCc-ccCCccCEEECCCCcCCCCChhHhhcccccccccccccc-ccc
Confidence                         1 3566778888877543 4443 23679999999999988 456788999999999999998 555


Q ss_pred             C-ccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccc----cccCCCcccccccccCCCCCC
Q 013724          355 L-PSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETS----AASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       355 L-P~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~----~~~~~~~~~l~~~~~s~~~~~  426 (437)
                      + |..+.++++|++|+|++|. +..+|..+.++++|+.|++.++........    .........+..+..+++.+.
T Consensus       210 ~~~~~~~~l~~L~~L~L~~N~-L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         210 VDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             ECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cccccccccccceeeeccccc-ccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            5 5678899999999999985 678999999999999999987654332211    111223455677777777665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.16  E-value=1.6e-10  Score=105.00  Aligned_cols=140  Identities=19%  Similarity=0.265  Sum_probs=69.5

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCC----------------
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKR----------------  308 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~----------------  308 (437)
                      .|+.+++++|......    .+..+++|+.|++++|. .+.++....+++|+.|++++|.....                
T Consensus        64 ~L~~L~ls~n~i~~~~----~l~~l~~l~~l~~~~n~-~~~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~  138 (227)
T d1h6ua2          64 NLIGLELKDNQITDLA----PLKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL  138 (227)
T ss_dssp             TCCEEECCSSCCCCCG----GGTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCS
T ss_pred             CCcEeecCCceeeccc----ccccccccccccccccc-ccccccccccccccccccccccccccchhccccchhhhhchh
Confidence            4455555554332211    13445556666666554 44444322555566665555432211                


Q ss_pred             -----CCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhc
Q 013724          309 -----LPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDI  383 (437)
Q Consensus       309 -----lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l  383 (437)
                           .+.+..+++|+.|++++|.+..++. ++++++|+.|+|++|+ +..+|. +.++++|++|+|++|+ +..+| .+
T Consensus       139 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~-l~~l~~-l~~l~~L~~L~Ls~N~-lt~i~-~l  213 (227)
T d1h6ua2         139 NQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNNQ-ISDVS-PL  213 (227)
T ss_dssp             SCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECTTSC-CCBCG-GG
T ss_pred             hhhchhhhhccccccccccccccccccchh-hcccccceecccCCCc-cCCChh-hcCCCCCCEEECcCCc-CCCCc-cc
Confidence                 0013334555555555555554332 5555666666666654 445543 5555666666666553 44454 25


Q ss_pred             cCCCCCceeec
Q 013724          384 WSILPLVLTTF  394 (437)
Q Consensus       384 ~~L~~L~~L~~  394 (437)
                      .++++|+.|++
T Consensus       214 ~~l~~L~~L~l  224 (227)
T d1h6ua2         214 ANTSNLFIVTL  224 (227)
T ss_dssp             TTCTTCCEEEE
T ss_pred             ccCCCCCEEEe
Confidence            55555655554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.10  E-value=2.7e-10  Score=110.46  Aligned_cols=159  Identities=23%  Similarity=0.224  Sum_probs=99.6

Q ss_pred             cccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEec
Q 013724          267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDL  346 (437)
Q Consensus       267 ~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L  346 (437)
                      ..+++|+.|++++|. +..++....+++|+.|++++|.+ ..++.+..+++|+.|+++++.+..+++ +..++.++.+.+
T Consensus       216 ~~~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~l~~l~~  292 (384)
T d2omza2         216 GILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQI-SNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLEL  292 (384)
T ss_dssp             GGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCC-CCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEEC
T ss_pred             cccCCCCEEECCCCC-CCCcchhhcccccchhccccCcc-CCCCcccccccCCEeeccCcccCCCCc-cccccccccccc
Confidence            345677777777776 55555333677777777777753 345557777777777777777776653 666777777777


Q ss_pred             cCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccccchhhccccccCCCcccccccccCCCCCC
Q 013724          347 EDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYVYKFFVETSAASGDDWKSAFDAAADGPVKP  426 (437)
Q Consensus       347 ~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~  426 (437)
                      .+|. +..++ .+..+++|+.|++++|.. ..++ .+..+++|+.|++.+|......    ....++.++.+..+++.+.
T Consensus       293 ~~n~-l~~~~-~~~~~~~l~~L~ls~n~l-~~l~-~l~~l~~L~~L~L~~n~l~~l~----~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         293 NENQ-LEDIS-PISNLKNLTYLTLYFNNI-SDIS-PVSSLTKLQRLFFANNKVSDVS----SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             CSSC-CSCCG-GGGGCTTCSEEECCSSCC-SCCG-GGGGCTTCCEEECCSSCCCCCG----GGGGCTTCCEEECCSSCCC
T ss_pred             cccc-ccccc-ccchhcccCeEECCCCCC-CCCc-ccccCCCCCEEECCCCCCCCCh----hHcCCCCCCEEECCCCcCC
Confidence            7776 44443 366677777777777653 3444 3667777777777666432211    2334566777777766655


Q ss_pred             cc-cccccccC
Q 013724          427 SQ-LLSFCIQL  436 (437)
Q Consensus       427 ~~-d~s~c~~l  436 (437)
                      .. .+..|.+|
T Consensus       365 ~l~~l~~l~~L  375 (384)
T d2omza2         365 DLTPLANLTRI  375 (384)
T ss_dssp             BCGGGTTCTTC
T ss_pred             CChhhccCCCC
Confidence            32 34444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.1e-10  Score=98.65  Aligned_cols=104  Identities=17%  Similarity=0.120  Sum_probs=87.1

Q ss_pred             ceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC--CCCCCCCCEEEeeCCCCcccC-hhhcCCCCCCEEec
Q 013724          271 TLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELP-SSIECLYKLLHLDL  346 (437)
Q Consensus       271 ~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~--l~~l~~L~~L~Ls~n~l~~lp-~~i~~L~~L~~L~L  346 (437)
                      ....++..++. +..+|..+ .+++|+.|+|++++.+..++.  |.++++|+.|+|++|+|+.++ ..|..+++|+.|+|
T Consensus         9 ~~~~l~c~~~~-~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDG-ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSC-CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCC-CccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            34567778776 66778777 889999999988776776664  899999999999999999985 46899999999999


Q ss_pred             cCCCCCCCCccccCCCCCCCEEeeeCCCCC
Q 013724          347 EDCKSLKSLPSGLCKLKSLKYLTLNGCSIL  376 (437)
Q Consensus       347 ~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l  376 (437)
                      ++|+ ++.+|..+....+|+.|+|++|+..
T Consensus        88 s~N~-l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNA-LESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CSSC-CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cCCC-CcccChhhhccccccccccCCCccc
Confidence            9999 8889887666668999999998753

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.07  E-value=8e-13  Score=118.75  Aligned_cols=125  Identities=21%  Similarity=0.243  Sum_probs=99.7

Q ss_pred             cccccCceEEEeccCCCCCCCcCccC-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChhhcCCCCCC
Q 013724          265 FSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLL  342 (437)
Q Consensus       265 ~~~~l~~L~~L~Ls~n~~l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~  342 (437)
                      .+..+++|+.|+|++|. +..++. + .+++|+.|+|++|. +..+|. +..+++|+.|++++|.|+.++ .+..+++|+
T Consensus        43 sl~~L~~L~~L~Ls~n~-I~~i~~-l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~  118 (198)
T d1m9la_          43 TLSTLKACKHLALSTNN-IEKISS-LSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR  118 (198)
T ss_dssp             HHHHTTTCCEEECSEEE-ESCCCC-HHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSS
T ss_pred             HHhcccccceeECcccC-CCCccc-ccCCccccChhhcccc-cccccccccccccccccccccccccccc-ccccccccc
Confidence            35678899999999998 777764 5 88999999999986 456776 444678999999999999875 488899999


Q ss_pred             EEeccCCCCCCCCc--cccCCCCCCCEEeeeCCCCCCccch----------hccCCCCCceeec
Q 013724          343 HLDLEDCKSLKSLP--SGLCKLKSLKYLTLNGCSILQRLNF----------DIWSILPLVLTTF  394 (437)
Q Consensus       343 ~L~L~~n~~l~~LP--~~l~~L~~L~~L~Ls~c~~l~~lP~----------~l~~L~~L~~L~~  394 (437)
                      .|+|++|. +..++  ..+..+++|+.|+|++|+.....+.          .+..+++|+.|+.
T Consensus       119 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~  181 (198)
T d1m9la_         119 VLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             EEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESS
T ss_pred             ccccccch-hccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCC
Confidence            99999998 77776  3588999999999999875433222          2567888888875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.8e-11  Score=115.62  Aligned_cols=152  Identities=21%  Similarity=0.299  Sum_probs=108.0

Q ss_pred             HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCc--CccC-CCCCccEEeeeCCCCCCC--CCC-CCC-CC
Q 013724          244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL--PAGI-HLEFLKELDLSGCSKLKR--LPD-ISS-AA  316 (437)
Q Consensus       244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~l--p~~~-~l~~L~~L~Ls~n~~~~~--lp~-l~~-l~  316 (437)
                      ..|+.|.+.+|......  ...+..+++|+.|++++|..++..  .... .+++|++|+|++|..+..  +.. +.. .+
T Consensus        71 ~~L~~L~L~~~~l~~~~--~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~  148 (284)
T d2astb2          71 SKLQNLSLEGLRLSDPI--VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE  148 (284)
T ss_dssp             CCCSEEECTTCBCCHHH--HHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred             CCcccccccccCCCcHH--HHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccc
Confidence            46788888888542211  123456789999999998756532  1222 689999999999865542  122 322 46


Q ss_pred             CCCEEEeeCC--CCc--ccChhhcCCCCCCEEeccCCCCCC-CCccccCCCCCCCEEeeeCCCCCC-ccchhccCCCCCc
Q 013724          317 NIEEMFLNGT--AIE--ELPSSIECLYKLLHLDLEDCKSLK-SLPSGLCKLKSLKYLTLNGCSILQ-RLNFDIWSILPLV  390 (437)
Q Consensus       317 ~L~~L~Ls~n--~l~--~lp~~i~~L~~L~~L~L~~n~~l~-~LP~~l~~L~~L~~L~Ls~c~~l~-~lP~~l~~L~~L~  390 (437)
                      +|+.|+++++  .++  .+..-+.++++|+.|++++|..++ ..+..+.++++|++|+|++|+.+. .....++++++|+
T Consensus       149 ~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~  228 (284)
T d2astb2         149 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK  228 (284)
T ss_dssp             TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCC
Confidence            8999999874  354  344455778999999999987665 345668889999999999987654 3445678889999


Q ss_pred             eeecccc
Q 013724          391 LTTFIYV  397 (437)
Q Consensus       391 ~L~~~~~  397 (437)
                      .|++.+|
T Consensus       229 ~L~l~~~  235 (284)
T d2astb2         229 TLQVFGI  235 (284)
T ss_dssp             EEECTTS
T ss_pred             EEeeeCC
Confidence            9998776

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.2e-09  Score=97.77  Aligned_cols=149  Identities=16%  Similarity=0.196  Sum_probs=73.0

Q ss_pred             hhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccC--CCCCccEEeeeCCCCCCCCC-C-CCCCCCCCEE
Q 013724          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLP-D-ISSAANIEEM  321 (437)
Q Consensus       246 L~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~--~l~~L~~L~Ls~n~~~~~lp-~-l~~l~~L~~L  321 (437)
                      +++|+++++... ..+. ..+.++++|++|++++|.....++...  .++.++.|.+..++.+..++ . +.++++|+.|
T Consensus        31 l~~L~Ls~n~i~-~l~~-~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          31 AIELRFVLTKLR-VIQK-GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             CSEEEEESCCCC-EECT-TTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCEEECcCCcCC-ccCh-hHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            345555554432 2221 123445666666666665444343332  55555655555433333222 2 4555666666


Q ss_pred             EeeCCCCcccCh--------------------------hhcCC-CCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCC
Q 013724          322 FLNGTAIEELPS--------------------------SIECL-YKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCS  374 (437)
Q Consensus       322 ~Ls~n~l~~lp~--------------------------~i~~L-~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~  374 (437)
                      ++++|.+..++.                          .+..+ ..++.|++.+|. +..++..+...++++.+....++
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~-l~~i~~~~~~~~~l~~~~~l~~n  187 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNCAFNGTQLDELNLSDNN  187 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTTTTTCCEEEEECTTCT
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccc-ccccccccccchhhhcccccccc
Confidence            666555543322                          11222 245555555554 44555544455555555444445


Q ss_pred             CCCccchh-ccCCCCCceeecccc
Q 013724          375 ILQRLNFD-IWSILPLVLTTFIYV  397 (437)
Q Consensus       375 ~l~~lP~~-l~~L~~L~~L~~~~~  397 (437)
                      .++.+|.. +.++++|+.|++.++
T Consensus       188 ~l~~l~~~~f~~l~~L~~L~Ls~N  211 (242)
T d1xwdc1         188 NLEELPNDVFHGASGPVILDISRT  211 (242)
T ss_dssp             TCCCCCTTTTTTSCCCSEEECTTS
T ss_pred             ccccccHHHhcCCCCCCEEECCCC
Confidence            55566543 566666666666443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.86  E-value=2.5e-11  Score=108.75  Aligned_cols=113  Identities=18%  Similarity=0.178  Sum_probs=94.4

Q ss_pred             CCCcCccC-CCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCC
Q 013724          283 LKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCK  361 (437)
Q Consensus       283 l~~lp~~~-~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~  361 (437)
                      +..++..+ .+++|++|+|++|. +..++.+..+++|+.|+|++|.|+.+|.....+++|+.|++++|. ++.++ .+..
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~n~-I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~-i~~l~-~~~~  113 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEK  113 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSEEE-ESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEE-CCCHH-HHHH
T ss_pred             hhhhhhHHhcccccceeECcccC-CCCcccccCCccccChhhccccccccccccccccccccccccccc-ccccc-cccc
Confidence            45566666 89999999999986 456777889999999999999999998777777899999999997 77775 4788


Q ss_pred             CCCCCEEeeeCCCCCCccc--hhccCCCCCceeecccccc
Q 013724          362 LKSLKYLTLNGCSILQRLN--FDIWSILPLVLTTFIYVYK  399 (437)
Q Consensus       362 L~~L~~L~Ls~c~~l~~lP--~~l~~L~~L~~L~~~~~~~  399 (437)
                      +++|++|++++|. +..++  ..+..+++|+.|++.+++.
T Consensus       114 l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         114 LVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             cccccccccccch-hccccccccccCCCccceeecCCCcc
Confidence            9999999999976 45555  4689999999999877543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2.9e-10  Score=107.14  Aligned_cols=146  Identities=22%  Similarity=0.259  Sum_probs=66.7

Q ss_pred             hhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCC--cCccC--CCCCccEEeeeCCCC-CC--CCCC-CCCCC
Q 013724          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKS--LPAGI--HLEFLKELDLSGCSK-LK--RLPD-ISSAA  316 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~--lp~~~--~l~~L~~L~Ls~n~~-~~--~lp~-l~~l~  316 (437)
                      .|+.|++++|..++..........+++|++|++++|..++.  +...+  ..++|+.|++++|.. +.  .+.. +.+++
T Consensus        96 ~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~  175 (284)
T d2astb2          96 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP  175 (284)
T ss_dssp             TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT
T ss_pred             CCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccc
Confidence            35555555554443222222233455666666666543321  11111  335566666655421 11  1112 23455


Q ss_pred             CCCEEEeeCC-CCc-ccChhhcCCCCCCEEeccCCCCCCC-CccccCCCCCCCEEeeeCCCCCCccchhccCCCCCc
Q 013724          317 NIEEMFLNGT-AIE-ELPSSIECLYKLLHLDLEDCKSLKS-LPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLV  390 (437)
Q Consensus       317 ~L~~L~Ls~n-~l~-~lp~~i~~L~~L~~L~L~~n~~l~~-LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~  390 (437)
                      +|++|+|+++ .++ ..+..+..+++|++|+|++|..++. -...++++++|+.|++++|-..+.++.-...+++|+
T Consensus       176 ~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE
T ss_pred             cccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc
Confidence            6666666553 344 3444555566666666666543332 123345556666666665533333333333344444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=8.6e-09  Score=88.21  Aligned_cols=88  Identities=18%  Similarity=0.131  Sum_probs=74.1

Q ss_pred             ccccccCceEEEeccCCCCCCCcCcc-C-CCCCccEEeeeCCCCCCCCCC-CCCCCCCCEEEeeCCCCcccChhhcCCCC
Q 013724          264 SFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYK  340 (437)
Q Consensus       264 ~~~~~l~~L~~L~Ls~n~~l~~lp~~-~-~l~~L~~L~Ls~n~~~~~lp~-l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~  340 (437)
                      ..+..+++|+.|++.+++.++.++.. + .+++|+.|+|++|.+....|. |..+++|++|+|++|+|+.+|..+....+
T Consensus        25 ~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~  104 (156)
T d2ifga3          25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS  104 (156)
T ss_dssp             TTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC
T ss_pred             ccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcccc
Confidence            34556889999999887668888765 4 899999999999875544455 89999999999999999999988776678


Q ss_pred             CCEEeccCCCC
Q 013724          341 LLHLDLEDCKS  351 (437)
Q Consensus       341 L~~L~L~~n~~  351 (437)
                      |+.|+|++|+.
T Consensus       105 l~~L~L~~Np~  115 (156)
T d2ifga3         105 LQELVLSGNPL  115 (156)
T ss_dssp             CCEEECCSSCC
T ss_pred             ccccccCCCcc
Confidence            99999999984

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.4e-08  Score=92.35  Aligned_cols=126  Identities=17%  Similarity=0.163  Sum_probs=81.0

Q ss_pred             ccccCceEEEeccCCCCCCCcCccC---CCCCccEEeeeCCCCCCCCCC--CCCC-CCCCEEEeeCCCCcccChhhcCCC
Q 013724          266 SQHLNTLVVLNLRDCKSLKSLPAGI---HLEFLKELDLSGCSKLKRLPD--ISSA-ANIEEMFLNGTAIEELPSSIECLY  339 (437)
Q Consensus       266 ~~~l~~L~~L~Ls~n~~l~~lp~~~---~l~~L~~L~Ls~n~~~~~lp~--l~~l-~~L~~L~Ls~n~l~~lp~~i~~L~  339 (437)
                      +..+++|+.|++.+|. +...+...   .+..|..+...++ .+..++.  +..+ ..+..|++++|.++.++..+....
T Consensus        99 ~~~l~~L~~l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~-~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~  176 (242)
T d1xwdc1          99 FQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGT  176 (242)
T ss_dssp             EECCTTCCEEEEESCC-CCSCCCCTTTCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTC
T ss_pred             ccccccccccccchhh-hccccccccccccccccccccccc-ccccccccccccccccceeeecccccccccccccccch
Confidence            3455666666666665 33343322   2333333333332 2333332  4444 378889999999999988777778


Q ss_pred             CCCEEeccCCCCCCCCccc-cCCCCCCCEEeeeCCCCCCccch-hccCCCCCceeec
Q 013724          340 KLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNGCSILQRLNF-DIWSILPLVLTTF  394 (437)
Q Consensus       340 ~L~~L~L~~n~~l~~LP~~-l~~L~~L~~L~Ls~c~~l~~lP~-~l~~L~~L~~L~~  394 (437)
                      ++..+....+..++.+|.. +.++++|++|+|++|+ +..+|. .+.++.+|+.+++
T Consensus       177 ~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             CEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCSSSCTTCCEEESSSE
T ss_pred             hhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCHHHHcCCcccccCcC
Confidence            8777765444448889865 7899999999999977 567765 4666666666654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.55  E-value=1.3e-07  Score=89.54  Aligned_cols=135  Identities=20%  Similarity=0.177  Sum_probs=91.0

Q ss_pred             HhhhhhhcccCcccCCCCCCccccccCceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEe
Q 013724          244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFL  323 (437)
Q Consensus       244 ~aL~~L~Ls~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~L  323 (437)
                      ..++.|+|+++... ..|  .   ..++|++|++++|+ ++.+|..  +.+|+.|++++|. +..++.+.  ++|++|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp--~---~~~~L~~L~Ls~N~-l~~lp~~--~~~L~~L~l~~n~-l~~l~~lp--~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLP--E---LPPHLESLVASCNS-LTELPEL--PQSLKSLLVDNNN-LKALSDLP--PLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCC--S---CCTTCSEEECCSSC-CSSCCCC--CTTCCEEECCSSC-CSCCCSCC--TTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCC--C---CCCCCCEEECCCCC-Ccccccc--hhhhhhhhhhhcc-cchhhhhc--cccccccc
Confidence            35677888877543 333  2   24678888998887 7778764  4678888888875 33444432  46889999


Q ss_pred             eCCCCcccChhhcCCCCCCEEeccCCCCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCCCCCceeecccc
Q 013724          324 NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSILPLVLTTFIYV  397 (437)
Q Consensus       324 s~n~l~~lp~~i~~L~~L~~L~L~~n~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L~~L~~L~~~~~  397 (437)
                      ++|.+..+|. ++.+++|+.|++++|. +...|..   ...+..|.+..+...  .+..+..+..++.+.+..+
T Consensus       106 ~~n~l~~lp~-~~~l~~L~~L~l~~~~-~~~~~~~---~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n  172 (353)
T d1jl5a_         106 SNNQLEKLPE-LQNSSFLKIIDVDNNS-LKKLPDL---PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNN  172 (353)
T ss_dssp             CSSCCSSCCC-CTTCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSS
T ss_pred             cccccccccc-hhhhccceeecccccc-ccccccc---cccccchhhcccccc--ccccccccccceecccccc
Confidence            9998888875 6788899999998877 5555543   345566666654432  2345666777777766543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.42  E-value=5.2e-07  Score=85.21  Aligned_cols=105  Identities=24%  Similarity=0.290  Sum_probs=79.4

Q ss_pred             CceEEEeccCCCCCCCcCccCCCCCccEEeeeCCCCCCCCCCCCCCCCCCEEEeeCCCCcccChhhcCCCCCCEEeccCC
Q 013724          270 NTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDC  349 (437)
Q Consensus       270 ~~L~~L~Ls~n~~l~~lp~~~~l~~L~~L~Ls~n~~~~~lp~l~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~n  349 (437)
                      .+|++|+|++|. ++.+|..  +++|++|+|++|+ +..+|..  +.+|+.|++++|+++.++.-   .+.|++|++++|
T Consensus        38 ~~l~~LdLs~~~-L~~lp~~--~~~L~~L~Ls~N~-l~~lp~~--~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNLG-LSSLPEL--PPHLESLVASCNS-LTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTSC-CSCCCSC--CTTCSEEECCSSC-CSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS
T ss_pred             cCCCEEEeCCCC-CCCCCCC--CCCCCEEECCCCC-Ccccccc--hhhhhhhhhhhcccchhhhh---cccccccccccc
Confidence            368899999998 7788864  5789999999875 4577763  45889999999998877642   246999999998


Q ss_pred             CCCCCCccccCCCCCCCEEeeeCCCCCCccchhccCC
Q 013724          350 KSLKSLPSGLCKLKSLKYLTLNGCSILQRLNFDIWSI  386 (437)
Q Consensus       350 ~~l~~LP~~l~~L~~L~~L~Ls~c~~l~~lP~~l~~L  386 (437)
                      . +..+|. ++.+++|++|++++|.. ...|..+..+
T Consensus       109 ~-l~~lp~-~~~l~~L~~L~l~~~~~-~~~~~~~~~l  142 (353)
T d1jl5a_         109 Q-LEKLPE-LQNSSFLKIIDVDNNSL-KKLPDLPPSL  142 (353)
T ss_dssp             C-CSSCCC-CTTCTTCCEEECCSSCC-SCCCCCCTTC
T ss_pred             c-cccccc-hhhhccceeeccccccc-cccccccccc
Confidence            8 788885 67899999999988764 4444443333

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=1.4e-06  Score=84.99  Aligned_cols=102  Identities=19%  Similarity=0.314  Sum_probs=54.3

Q ss_pred             ceEEEeccCCCCCCCc--CccC-CCCCccEEeeeCCCCCC----CCCC-CCCCCCCCEEEeeCCCCcc-----cChhhcC
Q 013724          271 TLVVLNLRDCKSLKSL--PAGI-HLEFLKELDLSGCSKLK----RLPD-ISSAANIEEMFLNGTAIEE-----LPSSIEC  337 (437)
Q Consensus       271 ~L~~L~Ls~n~~l~~l--p~~~-~l~~L~~L~Ls~n~~~~----~lp~-l~~l~~L~~L~Ls~n~l~~-----lp~~i~~  337 (437)
                      +|+.|+|++++ ++..  ...+ .+++|++|+|++|.+..    .+.. +..+++|+.|+|++|.|+.     +...+..
T Consensus         3 ~l~~ld~~~~~-i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCc-CChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            46666776666 3221  1111 55666677777665331    1122 4556667777777666642     1122221


Q ss_pred             -CCCCCEEeccCCCCCCC-----CccccCCCCCCCEEeeeCCC
Q 013724          338 -LYKLLHLDLEDCKSLKS-----LPSGLCKLKSLKYLTLNGCS  374 (437)
Q Consensus       338 -L~~L~~L~L~~n~~l~~-----LP~~l~~L~~L~~L~Ls~c~  374 (437)
                       ..+|+.|+|++|. ++.     ++..+..+++|++|++++|.
T Consensus        82 ~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          82 PSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             TTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             CCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence             2356777777665 332     34445666667777776654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.74  E-value=3.2e-06  Score=80.54  Aligned_cols=183  Identities=15%  Similarity=0.065  Sum_probs=115.7

Q ss_pred             hhhhhhcccCcccCCCC--CCccccccCceEEEeccCCCCCCCc---------Cc-----cC-CCCCccEEeeeCCCCCC
Q 013724          245 ALKEKIISACNIFTKTP--NPSFSQHLNTLVVLNLRDCKSLKSL---------PA-----GI-HLEFLKELDLSGCSKLK  307 (437)
Q Consensus       245 aL~~L~Ls~~~~~~~~~--~~~~~~~l~~L~~L~Ls~n~~l~~l---------p~-----~~-~l~~L~~L~Ls~n~~~~  307 (437)
                      .|+.++|++|.......  ....+...++|+.|++++|. ++..         ..     .. ..+.|+.|.+++|.+..
T Consensus        94 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1          94 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             Ccccccccccccccccccchhhhhcccccchheeccccc-ccccccccccccccccccccccccCcccceeecccccccc
Confidence            47778888775432210  11123456889999999987 3210         00     01 46789999999876432


Q ss_pred             C----CCC-CCCCCCCCEEEeeCCCCcc------cChhhcCCCCCCEEeccCCCCC----CCCccccCCCCCCCEEeeeC
Q 013724          308 R----LPD-ISSAANIEEMFLNGTAIEE------LPSSIECLYKLLHLDLEDCKSL----KSLPSGLCKLKSLKYLTLNG  372 (437)
Q Consensus       308 ~----lp~-l~~l~~L~~L~Ls~n~l~~------lp~~i~~L~~L~~L~L~~n~~l----~~LP~~l~~L~~L~~L~Ls~  372 (437)
                      .    +.. +...++|+.|+|++|.|..      +...+..+++|+.|+|++|...    ..+...+..+++|++|+|++
T Consensus       173 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~  252 (344)
T d2ca6a1         173 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  252 (344)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             cccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhc
Confidence            1    112 4557889999999999873      3345778899999999998732    12455678899999999999


Q ss_pred             CCCCCc----cchhccC--CCCCceeecccccchhhccc--cccC-CCcccccccccCCCCCCcc
Q 013724          373 CSILQR----LNFDIWS--ILPLVLTTFIYVYKFFVETS--AASG-DDWKSAFDAAADGPVKPSQ  428 (437)
Q Consensus       373 c~~l~~----lP~~l~~--L~~L~~L~~~~~~~~~~~~~--~~~~-~~~~~l~~~~~s~~~~~~~  428 (437)
                      |.....    +-..+..  ...|+.|++.++........  .... ...+.++.+..+++.+..+
T Consensus       253 n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             CccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            986543    3333433  35799999877653211111  1111 1234567777777776543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=3.9e-06  Score=71.50  Aligned_cols=79  Identities=20%  Similarity=0.091  Sum_probs=44.9

Q ss_pred             CCCCCCEEEeeCCCCcccC---hhhcCCCCCCEEeccCCCCCCCCccc-cCCCCCCCEEeeeCCCCCCccc-------hh
Q 013724          314 SAANIEEMFLNGTAIEELP---SSIECLYKLLHLDLEDCKSLKSLPSG-LCKLKSLKYLTLNGCSILQRLN-------FD  382 (437)
Q Consensus       314 ~l~~L~~L~Ls~n~l~~lp---~~i~~L~~L~~L~L~~n~~l~~LP~~-l~~L~~L~~L~Ls~c~~l~~lP-------~~  382 (437)
                      .+++|++|+|++|+|+.++   ..+..+++|+.|+|++|. +.++++. .....+|+.|++.+|+......       ..
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            4566666666666666442   345566677777777666 5555541 1223356667777766554332       22


Q ss_pred             ccCCCCCceee
Q 013724          383 IWSILPLVLTT  393 (437)
Q Consensus       383 l~~L~~L~~L~  393 (437)
                      +..+++|+.|+
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            45566666665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=5.5e-06  Score=80.51  Aligned_cols=105  Identities=14%  Similarity=0.183  Sum_probs=78.6

Q ss_pred             CCccEEeeeCCCCCCC-CCC-CCCCCCCCEEEeeCCCCc-----ccChhhcCCCCCCEEeccCCCCCCC-----CccccC
Q 013724          293 EFLKELDLSGCSKLKR-LPD-ISSAANIEEMFLNGTAIE-----ELPSSIECLYKLLHLDLEDCKSLKS-----LPSGLC  360 (437)
Q Consensus       293 ~~L~~L~Ls~n~~~~~-lp~-l~~l~~L~~L~Ls~n~l~-----~lp~~i~~L~~L~~L~L~~n~~l~~-----LP~~l~  360 (437)
                      .+|+.|+++++++... +.. +..+++|+.|+|++|.|+     .+...+..+++|+.|+|++|. ++.     +...+.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHHh
Confidence            3689999998875442 122 566889999999999987     345667899999999999987 542     233332


Q ss_pred             -CCCCCCEEeeeCCCCCCc----cchhccCCCCCceeeccccc
Q 013724          361 -KLKSLKYLTLNGCSILQR----LNFDIWSILPLVLTTFIYVY  398 (437)
Q Consensus       361 -~L~~L~~L~Ls~c~~l~~----lP~~l~~L~~L~~L~~~~~~  398 (437)
                       ...+|++|++++|.....    ++..+..+++|+.|++.++.
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence             235799999999975432    56778889999999987654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=8.9e-06  Score=69.16  Aligned_cols=79  Identities=18%  Similarity=0.143  Sum_probs=57.4

Q ss_pred             CCCCccEEeeeCCCCCCC--CCC-CCCCCCCCEEEeeCCCCcccCh-hhcCCCCCCEEeccCCCCCCCCcc-------cc
Q 013724          291 HLEFLKELDLSGCSKLKR--LPD-ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPS-------GL  359 (437)
Q Consensus       291 ~l~~L~~L~Ls~n~~~~~--lp~-l~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L~~n~~l~~LP~-------~l  359 (437)
                      .+++|++|+|++|.+...  ++. +..+++|+.|+|++|.|+.+++ ......+|+.|++.+|+.......       .+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            678899999999875432  223 5568999999999999998765 233445789999999985443332       25


Q ss_pred             CCCCCCCEEe
Q 013724          360 CKLKSLKYLT  369 (437)
Q Consensus       360 ~~L~~L~~L~  369 (437)
                      ..+++|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            6789999886

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.48  E-value=1.9e-05  Score=74.92  Aligned_cols=126  Identities=15%  Similarity=0.159  Sum_probs=82.2

Q ss_pred             cCceEEEeccCCCCCCC-----cCccC-CCCCccEEeeeCCCCCCC-----CCC-CCCCCCCCEEEeeCCCCc-----cc
Q 013724          269 LNTLVVLNLRDCKSLKS-----LPAGI-HLEFLKELDLSGCSKLKR-----LPD-ISSAANIEEMFLNGTAIE-----EL  331 (437)
Q Consensus       269 l~~L~~L~Ls~n~~l~~-----lp~~~-~l~~L~~L~Ls~n~~~~~-----lp~-l~~l~~L~~L~Ls~n~l~-----~l  331 (437)
                      .+.|+.|.+++|. ++.     +...+ .++.|+.|+|++|.+...     +.. +..+++|+.|+|++|.+.     .+
T Consensus       157 ~~~L~~l~l~~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         157 APPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             CCCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             Ccccceeeccccc-ccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence            4577888888876 332     11222 567888999988865421     222 667788999999988876     24


Q ss_pred             ChhhcCCCCCCEEeccCCCCCCC-----CccccC--CCCCCCEEeeeCCCCCC----ccchhcc-CCCCCceeeccc
Q 013724          332 PSSIECLYKLLHLDLEDCKSLKS-----LPSGLC--KLKSLKYLTLNGCSILQ----RLNFDIW-SILPLVLTTFIY  396 (437)
Q Consensus       332 p~~i~~L~~L~~L~L~~n~~l~~-----LP~~l~--~L~~L~~L~Ls~c~~l~----~lP~~l~-~L~~L~~L~~~~  396 (437)
                      ...+..+++|+.|+|++|. ++.     +-..+.  ..+.|++|+|++|....    .+...+. ++++|+.|++.+
T Consensus       236 ~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~  311 (344)
T d2ca6a1         236 AIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG  311 (344)
T ss_dssp             HHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             cccccccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCC
Confidence            4567788889999999887 443     222232  23578899998876432    2444443 567788888644

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.93  E-value=0.00011  Score=62.55  Aligned_cols=82  Identities=11%  Similarity=0.199  Sum_probs=38.7

Q ss_pred             cCceEEEeccCCCCCCC-----cCccC-CCCCccEEeeeCCCCCCC----CCC-CCCCCCCCEEEeeCCCCcc-----cC
Q 013724          269 LNTLVVLNLRDCKSLKS-----LPAGI-HLEFLKELDLSGCSKLKR----LPD-ISSAANIEEMFLNGTAIEE-----LP  332 (437)
Q Consensus       269 l~~L~~L~Ls~n~~l~~-----lp~~~-~l~~L~~L~Ls~n~~~~~----lp~-l~~l~~L~~L~Ls~n~l~~-----lp  332 (437)
                      .++|+.|+|++++.++.     +-..+ ..+.|+.|+|++|.+...    +.. +...+.|+.|+|++|.|..     +-
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            35677777765432321     00111 345566666666543211    111 2334556666666655551     22


Q ss_pred             hhhcCCCCCCEEeccCCC
Q 013724          333 SSIECLYKLLHLDLEDCK  350 (437)
Q Consensus       333 ~~i~~L~~L~~L~L~~n~  350 (437)
                      ..+...++|+.|+|++|.
T Consensus        94 ~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHTTTTCCCSEEECCCCS
T ss_pred             HHHHhCCcCCEEECCCCc
Confidence            334445556666665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.92  E-value=0.00029  Score=59.71  Aligned_cols=105  Identities=20%  Similarity=0.183  Sum_probs=75.0

Q ss_pred             CCCCccEEeeeCCCCCCC--CC----CCCCCCCCCEEEeeCCCCc-----ccChhhcCCCCCCEEeccCCCCCCC-----
Q 013724          291 HLEFLKELDLSGCSKLKR--LP----DISSAANIEEMFLNGTAIE-----ELPSSIECLYKLLHLDLEDCKSLKS-----  354 (437)
Q Consensus       291 ~l~~L~~L~Ls~n~~~~~--lp----~l~~l~~L~~L~Ls~n~l~-----~lp~~i~~L~~L~~L~L~~n~~l~~-----  354 (437)
                      ..+.|+.|+|++++.++.  +.    .+...++|+.|+|++|.+.     .+...+...+.|+.|+|++|. ++.     
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~~   91 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLAR   91 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh-cchHHHHH
Confidence            457899999997654432  11    2667788999999999987     233456677899999999997 543     


Q ss_pred             CccccCCCCCCCEEeeeCCCC--CC-----ccchhccCCCCCceeeccc
Q 013724          355 LPSGLCKLKSLKYLTLNGCSI--LQ-----RLNFDIWSILPLVLTTFIY  396 (437)
Q Consensus       355 LP~~l~~L~~L~~L~Ls~c~~--l~-----~lP~~l~~L~~L~~L~~~~  396 (437)
                      +-..+...++|++|+|++|..  ++     .+...+..-++|+.|++..
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence            334577888999999988742  22     2455566668888887644

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.08  E-value=0.0018  Score=54.32  Aligned_cols=10  Identities=30%  Similarity=0.381  Sum_probs=5.6

Q ss_pred             CceEEEeccC
Q 013724          270 NTLVVLNLRD  279 (437)
Q Consensus       270 ~~L~~L~Ls~  279 (437)
                      +.|++|+|++
T Consensus        17 ~~L~~L~L~~   26 (166)
T d1io0a_          17 PDLEEVNLNN   26 (166)
T ss_dssp             TTCCEEECTT
T ss_pred             CCCcEEEcCC
Confidence            4555566554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.98  E-value=0.00072  Score=56.86  Aligned_cols=106  Identities=16%  Similarity=0.144  Sum_probs=68.7

Q ss_pred             CCCCccEEeeeCCCCCCCC-----CC-CCCCCCCCEEEeeCCCCc-----ccChhhcCCCCCCEEeccCCCCCC----CC
Q 013724          291 HLEFLKELDLSGCSKLKRL-----PD-ISSAANIEEMFLNGTAIE-----ELPSSIECLYKLLHLDLEDCKSLK----SL  355 (437)
Q Consensus       291 ~l~~L~~L~Ls~n~~~~~l-----p~-l~~l~~L~~L~Ls~n~l~-----~lp~~i~~L~~L~~L~L~~n~~l~----~L  355 (437)
                      ..+.|+.|+|++++.++.-     -. +...++|+.|+|++|.+.     .+-..+...++|+.|++++|....    .+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            4578888888875434321     11 556788888999888876     233456667888888888877321    13


Q ss_pred             ccccCCCCCCCEEeeeCCC-CCC-----ccchhccCCCCCceeeccc
Q 013724          356 PSGLCKLKSLKYLTLNGCS-ILQ-----RLNFDIWSILPLVLTTFIY  396 (437)
Q Consensus       356 P~~l~~L~~L~~L~Ls~c~-~l~-----~lP~~l~~L~~L~~L~~~~  396 (437)
                      -..+...++|+.++|+.|. .++     .+...+...++|+.|++..
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            3456777888877775432 333     2555566778888887643