Citrus Sinensis ID: 013743

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------
MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPGGMGGMGGMGGMDY
ccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHEEEEcccccHHHHHHHHHHHHHHccccEEEEEcccccccEEEEEEccccccccccccccccccccEEEccccEEEEEccccHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHHHHccEEEEcccccccccccccccccccEEEEEcccEEEEcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHcEccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEEcccccccEEEEEccEEEcccEcccccccEccccEEEEEccEEEcEEcEEccHHHcHHHHHHHHHHHccEEEEEcEEcHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHccccEEHHHccccccccccccEEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcEEEcccHHHHHHHHHccccccccHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHccccEEEEccccEEEEccccccEEEHHHHHHHHHHHHHHHHHHHcEEEEEEEccccccccccccccccccccccc
mnamdlrrGITMAVDAVVTNLKSRARMISTSEEIAQVgtisangeREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVegmkldrgyispyfitnqknqkceledpliLVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCaikapgfgenrkaNMQDLAVLTGGDLITEELGMDLEKVNLDMLGTckkvtiskddtvildgagdkkSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKiggaseaevgekKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNAlktpvhtiaaNAGVEGAVVVGKLLeqdntdlgydaakgEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVElpkeekeapggmggmggmggmdy
mnamdlrrgitMAVDAVVTNLKSRARMistseeiaqvgtisangeREIGELIAKAMEKVGKEGvitihdgktlynELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIkapgfgenrkanMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCkkvtiskddtvildgagdkksiEERCEQIRSaienstsdydkEKLQERLAKLSGGVAVLKiggaseaevgekkdRVTDALNATKaaveegivpgGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDaasvsslmttteaivvelpkeekeapggmggmggmggmdy
MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVallyaakeleklSTANFDQKIGVQIIQNALKTPVHTIaanagvegavvvgKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPggmggmggmggmDY
********GITMAVDAVVTNLKSRARMI****EIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDG*************************************SGGVAVLKIG****************ALNATKAAVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE***********************
MNAMDLRRGITMAVDAVVTNLKS********EEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVV************************
MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPGGMGGMGGMGGMDY
*NAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE*******************
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MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDxxxxxxxxxxxxxxxxxxxxxYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAPGGMGGMGGMGGMDY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query437 2.2.26 [Sep-21-2011]
Q05046575 Chaperonin CPN60-2, mitoc N/A no 0.967 0.735 0.929 0.0
Q43298576 Chaperonin CPN60-2, mitoc N/A no 0.990 0.751 0.885 0.0
Q05045575 Chaperonin CPN60-1, mitoc N/A no 0.967 0.735 0.907 0.0
P29197577 Chaperonin CPN60, mitocho yes no 0.965 0.731 0.902 0.0
P29185577 Chaperonin CPN60-1, mitoc N/A no 0.958 0.726 0.902 0.0
Q8L7B5585 Chaperonin CPN60-like 1, no no 0.967 0.723 0.860 0.0
P35480587 Chaperonin CPN60, mitocho N/A no 0.965 0.718 0.841 0.0
Q93ZM7572 Chaperonin CPN60-like 2, no no 0.986 0.753 0.713 1e-177
Q2RY28543 60 kDa chaperonin 1 OS=Rh yes no 0.990 0.797 0.620 1e-157
P35471542 60 kDa chaperonin 5 OS=Rh yes no 0.988 0.797 0.615 1e-152
>sp|Q05046|CH62_CUCMA Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1 Back     alignment and function desciption
 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/423 (92%), Positives = 415/423 (98%)

Query: 1   MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVG 60
           MNAMDLRRGI+MAVD+VVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVG
Sbjct: 142 MNAMDLRRGISMAVDSVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVG 201

Query: 61  KEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNL 120
           KEGVITI DGKTL+NELEVVEGMKLDRGYISPYFITNQKNQKCEL+DPLIL+HEKKIS++
Sbjct: 202 KEGVITISDGKTLFNELEVVEGMKLDRGYISPYFITNQKNQKCELDDPLILIHEKKISSI 261

Query: 121 TAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQ 180
            +VV+VLELALKRQRPLLIV+EDVES+ALATLILNKLRAGIKVCAIKAPGFGENRKA + 
Sbjct: 262 NSVVKVLELALKRQRPLLIVSEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKAGLH 321

Query: 181 DLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240
           DLAVLTGG LITEELGM+LEKV+LDMLG+CKK+TISKDDTVILDGAGDKKSIEERCEQIR
Sbjct: 322 DLAVLTGGQLITEELGMNLEKVDLDMLGSCKKITISKDDTVILDGAGDKKSIEERCEQIR 381

Query: 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG 300
           SAIE STSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG
Sbjct: 382 SAIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG 441

Query: 301 IVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLL 360
           IVPGGGVALLYA+KEL+KLSTANFDQKIGVQIIQNALKTPVHTIA+NAGVEGAVVVGKLL
Sbjct: 442 IVPGGGVALLYASKELDKLSTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLL 501

Query: 361 EQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEK 420
           EQDN DLGYDAAKGEYVDM+K+GIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK+EK
Sbjct: 502 EQDNPDLGYDAAKGEYVDMIKAGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKDEK 561

Query: 421 EAP 423
           E P
Sbjct: 562 EVP 564
Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.
Cucurbita maxima (taxid: 3661)
>sp|Q43298|CH62_MAIZE Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1 Back     alignment and function description
>sp|Q05045|CH61_CUCMA Chaperonin CPN60-1, mitochondrial OS=Cucurbita maxima GN=CPN60-1 PE=1 SV=1 Back     alignment and function description
>sp|P29197|CH60A_ARATH Chaperonin CPN60, mitochondrial OS=Arabidopsis thaliana GN=CPN60 PE=1 SV=2 Back     alignment and function description
>sp|P29185|CH61_MAIZE Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2 Back     alignment and function description
>sp|Q8L7B5|CH60B_ARATH Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=1 SV=1 Back     alignment and function description
>sp|P35480|CH60_BRANA Chaperonin CPN60, mitochondrial OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|Q93ZM7|CH60C_ARATH Chaperonin CPN60-like 2, mitochondrial OS=Arabidopsis thaliana GN=At3g13860 PE=1 SV=2 Back     alignment and function description
>sp|Q2RY28|CH601_RHORT 60 kDa chaperonin 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=groL1 PE=3 SV=1 Back     alignment and function description
>sp|P35471|CH605_RHIME 60 kDa chaperonin 5 OS=Rhizobium meliloti (strain 1021) GN=groL5 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query437
357442731 574 Chaperonin CPN60-like protein [Medicago 0.990 0.754 0.906 0.0
461736 575 RecName: Full=Chaperonin CPN60-2, mitoch 0.967 0.735 0.929 0.0
255554262 574 chaperonin-60kD, ch60, putative [Ricinus 0.990 0.754 0.906 0.0
110289207 634 Chaperonin CPN60-1, mitochondrial precur 0.990 0.682 0.901 0.0
115482382 574 Os10g0462900 [Oryza sativa Japonica Grou 0.990 0.754 0.901 0.0
449458874 575 PREDICTED: chaperonin CPN60-2, mitochond 0.967 0.735 0.921 0.0
162460375 576 chaperonin CPN60-2, mitochondrial precur 0.990 0.751 0.885 0.0
225433375 575 PREDICTED: chaperonin CPN60-2, mitochond 0.970 0.737 0.917 0.0
356576411 575 PREDICTED: chaperonin CPN60-2, mitochond 0.967 0.735 0.910 0.0
356534856 575 PREDICTED: chaperonin CPN60-2, mitochond 0.967 0.735 0.912 0.0
>gi|357442731|ref|XP_003591643.1| Chaperonin CPN60-like protein [Medicago truncatula] gi|92882357|gb|ABE86688.1| GroEL-like chaperone, ATPase [Medicago truncatula] gi|355480691|gb|AES61894.1| Chaperonin CPN60-like protein [Medicago truncatula] Back     alignment and taxonomy information
 Score =  795 bits (2054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/437 (90%), Positives = 418/437 (95%), Gaps = 4/437 (0%)

Query: 1   MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVG 60
           MNAMDLRRGI MAVDAVVTNLKSRARMISTSEEIAQVGTISANG+REIGELIAKAMEKVG
Sbjct: 142 MNAMDLRRGINMAVDAVVTNLKSRARMISTSEEIAQVGTISANGDREIGELIAKAMEKVG 201

Query: 61  KEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNL 120
           KEGVITI DGKTL NELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLI++HEKKISN+
Sbjct: 202 KEGVITIADGKTLQNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLIIIHEKKISNI 261

Query: 121 TAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQ 180
            ++V+VLELALK+QRPLLIVAEDVES+ALATLILNKLRAGIKVCAIKAPGFGENRK+ +Q
Sbjct: 262 NSIVKVLELALKKQRPLLIVAEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKSGLQ 321

Query: 181 DLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240
           DLAVLTGG LITEELGM+LEKV+L+M G+CKK+TISKDDTVILDGAGDKKSIEERCEQIR
Sbjct: 322 DLAVLTGGQLITEELGMNLEKVDLEMFGSCKKITISKDDTVILDGAGDKKSIEERCEQIR 381

Query: 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG 300
           SA+ENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG
Sbjct: 382 SAVENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG 441

Query: 301 IVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLL 360
           IVPGGGVALLYA+ EL KL TANFDQKIGVQIIQNALKTPVHTIA+NAGVEGAVVVGKLL
Sbjct: 442 IVPGGGVALLYASNELSKLPTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLL 501

Query: 361 EQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEK 420
           EQDN DLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEA+V ELPKE+K
Sbjct: 502 EQDNPDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAVVSELPKEDK 561

Query: 421 EAPGGMGGMGGMGGMDY 437
           + P     M GMGGMDY
Sbjct: 562 DTP----AMPGMGGMDY 574

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|461736|sp|Q05046.1|CH62_CUCMA RecName: Full=Chaperonin CPN60-2, mitochondrial; AltName: Full=HSP60-2; Flags: Precursor gi|478786|pir||S29316 chaperonin 60 - cucurbit gi|12546|emb|CAA50218.1| chaperonin 60 [Cucurbita cv. Kurokawa Amakuri] Back     alignment and taxonomy information
>gi|255554262|ref|XP_002518171.1| chaperonin-60kD, ch60, putative [Ricinus communis] gi|223542767|gb|EEF44304.1| chaperonin-60kD, ch60, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|110289207|gb|AAP54159.2| Chaperonin CPN60-1, mitochondrial precursor, putative, expressed [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|115482382|ref|NP_001064784.1| Os10g0462900 [Oryza sativa Japonica Group] gi|22758324|gb|AAN05528.1| mitochondrial chaperonin-60 [Oryza sativa Japonica Group] gi|113639393|dbj|BAF26698.1| Os10g0462900 [Oryza sativa Japonica Group] gi|218184691|gb|EEC67118.1| hypothetical protein OsI_33923 [Oryza sativa Indica Group] gi|222612963|gb|EEE51095.1| hypothetical protein OsJ_31804 [Oryza sativa Japonica Group] gi|313575773|gb|ADR66966.1| 60 kDa chaperonin [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|449458874|ref|XP_004147171.1| PREDICTED: chaperonin CPN60-2, mitochondrial-like [Cucumis sativus] gi|449498579|ref|XP_004160576.1| PREDICTED: chaperonin CPN60-2, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|162460375|ref|NP_001105690.1| chaperonin CPN60-2, mitochondrial precursor [Zea mays] gi|2493646|sp|Q43298.1|CH62_MAIZE RecName: Full=Chaperonin CPN60-2, mitochondrial; AltName: Full=HSP60-2; Flags: Precursor gi|309559|gb|AAA33451.1| chaperonin 60 [Zea mays] gi|309561|gb|AAA33452.1| mitochondrial chaperonin 60 [Zea mays] gi|414871207|tpg|DAA49764.1| TPA: putative TCP-1/cpn60 chaperonin family protein [Zea mays] Back     alignment and taxonomy information
>gi|225433375|ref|XP_002285608.1| PREDICTED: chaperonin CPN60-2, mitochondrial isoform 1 [Vitis vinifera] gi|297741894|emb|CBI33329.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356576411|ref|XP_003556325.1| PREDICTED: chaperonin CPN60-2, mitochondrial-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356534856|ref|XP_003535967.1| PREDICTED: chaperonin CPN60-2, mitochondrial-like isoform 1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query437
TAIR|locus:2076081577 HSP60 "heat shock protein 60" 1.0 0.757 0.826 3.2e-184
TAIR|locus:2046590585 HSP60-2 "heat shock protein 60 0.967 0.723 0.806 9.6e-176
TAIR|locus:2087959572 HSP60-3A "heat shock protein 6 0.963 0.736 0.683 2.4e-147
DICTYBASE|DDB_G0288181556 hspA "chaperonin 60" [Dictyost 0.954 0.75 0.569 3e-124
UNIPROTKB|G4NAR5589 MGG_03165 "Heat shock protein 0.963 0.714 0.567 3e-124
ZFIN|ZDB-GENE-021206-1575 hspd1 "heat shock 60kD protein 0.963 0.732 0.548 7.2e-123
ASPGD|ASPL0000003680588 AN6089 [Emericella nidulans (t 0.963 0.715 0.574 1.5e-122
TIGR_CMR|CBU_1718552 CBU_1718 "chaperonin, 60 kDa" 0.965 0.764 0.554 4.6e-121
TIGR_CMR|SPO_0887546 SPO_0887 "chaperonin, 60 kDa" 0.963 0.771 0.550 5.8e-121
GENEDB_PFALCIPARUM|PF10_0153580 PF10_0153 "hsp60" [Plasmodium 0.963 0.725 0.542 1.5e-120
TAIR|locus:2076081 HSP60 "heat shock protein 60" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1787 (634.1 bits), Expect = 3.2e-184, P = 3.2e-184
 Identities = 361/437 (82%), Positives = 388/437 (88%)

Query:     1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVG 60
             MNAMDLRRGI+MAVDAVVTNLKS+ARMISTSEEIAQVGTISANGEREIGELIAKAMEKVG
Sbjct:   141 MNAMDLRRGISMAVDAVVTNLKSKARMISTSEEIAQVGTISANGEREIGELIAKAMEKVG 200

Query:    61 KEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNL 120
             KEGVITI DGKTL+NELEVVEGMKLDRGY SPYFITNQK QKCEL+DPLIL+HEKKIS++
Sbjct:   201 KEGVITIQDGKTLFNELEVVEGMKLDRGYTSPYFITNQKTQKCELDDPLILIHEKKISSI 260

Query:   121 TAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQ 180
              ++V+VLELALKRQRPLLIV+EDVES+ALATLILNKLRAGIKVCAIKAPGFGENRKAN+Q
Sbjct:   261 NSIVKVLELALKRQRPLLIVSEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKANLQ 320

Query:   181 DLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240
             DLA LTGG++IT+ELGM+LEKV+L MLGTCKKVT+SKDDTVILDGAGDKK IEERCEQIR
Sbjct:   321 DLAALTGGEVITDELGMNLEKVDLSMLGTCKKVTVSKDDTVILDGAGDKKGIEERCEQIR 380

Query:   241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG 300
             SAIE STSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG
Sbjct:   381 SAIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG 440

Query:   301 IVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLL 360
             I+PGGGV             TANFDQKIGVQIIQNALKTPV+TI             KLL
Sbjct:   441 ILPGGGVALLYAARELEKLPTANFDQKIGVQIIQNALKTPVYTIASNAGVEGAVIVGKLL 500

Query:   361 EQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEK 420
             EQDN DLGYDAAKGEYVDMVK+GIIDPLKVIRTALVDAASVSSL+TTTEA+VV+LPK+E 
Sbjct:   501 EQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLLTTTEAVVVDLPKDES 560

Query:   421 EAPXXXXXXXXXXXXDY 437
             E+             DY
Sbjct:   561 ESGAAGAGMGGMGGMDY 577
GO:0005524 "ATP binding" evidence=IEA;IDA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006457 "protein folding" evidence=IEA;RCA
GO:0042026 "protein refolding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0051131 "chaperone-mediated protein complex assembly" evidence=TAS
GO:0007005 "mitochondrion organization" evidence=TAS
GO:0009408 "response to heat" evidence=IEP;RCA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005759 "mitochondrial matrix" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA;IDA
GO:0005507 "copper ion binding" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0006626 "protein targeting to mitochondrion" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
TAIR|locus:2046590 HSP60-2 "heat shock protein 60-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087959 HSP60-3A "heat shock protein 60-3A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288181 hspA "chaperonin 60" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|G4NAR5 MGG_03165 "Heat shock protein 60" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-021206-1 hspd1 "heat shock 60kD protein 1 (chaperonin)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ASPGD|ASPL0000003680 AN6089 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1718 CBU_1718 "chaperonin, 60 kDa" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0887 SPO_0887 "chaperonin, 60 kDa" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF10_0153 PF10_0153 "hsp60" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q92H04CH60_RICCNNo assigned EC number0.61330.95880.7645yesno
B0BUM0CH60_RICRONo assigned EC number0.61190.96100.7678yesno
A4YRI5CH601_BRASONo assigned EC number0.61610.96560.7829yesno
A8EY36CH60_RICCKNo assigned EC number0.61000.95650.7641yesno
Q1GRD4CH602_SPHALNo assigned EC number0.58810.98160.7959yesno
A8GPB6CH60_RICAHNo assigned EC number0.60800.96330.7682yesno
Q5FPQ6CH60_GLUOXNo assigned EC number0.58580.99080.7974yesno
O85754CH60_RICTYNo assigned EC number0.61410.97020.7709yesno
B6IU98CH60_RHOCSNo assigned EC number0.60850.95880.7673yesno
Q9ZCT7CH60_RICPRNo assigned EC number0.61410.97020.7709yesno
Q2WAW8CH60_MAGSANo assigned EC number0.61810.95880.7590yesno
A8GT30CH60_RICRSNo assigned EC number0.61190.96100.7678yesno
P29197CH60A_ARATHNo assigned EC number0.90280.96560.7313yesno
Q4UMF2CH60_RICFENo assigned EC number0.60570.96330.7696yesno
C3PP72CH60_RICAENo assigned EC number0.60950.96100.7678yesno
Q3SQS3CH601_NITWNNo assigned EC number0.58810.98850.7970yesno
P35480CH60_BRANANo assigned EC number0.84190.96560.7189N/Ano
A8I5R5CH602_AZOC5No assigned EC number0.62400.94960.7656yesno
Q54J97CH60_DICDINo assigned EC number0.60760.95420.75yesno
Q11LG4CH601_MESSBNo assigned EC number0.61810.95650.7683yesno
P77829CH601_BRAJANo assigned EC number0.58620.96790.7833yesno
Q1M3H2CH603_RHIL3No assigned EC number0.58350.98850.7970yesno
B2ICU4CH60_BEII9No assigned EC number0.60280.96790.7718yesno
P35471CH605_RHIMENo assigned EC number0.61550.98850.7970yesno
Q98IH9CH602_RHILONo assigned EC number0.58350.98850.7970yesno
Q43298CH62_MAIZENo assigned EC number0.88550.99080.7517N/Ano
A5EG60CH603_BRASBNo assigned EC number0.61960.95650.7740yesno
Q2NBL8CH601_ERYLHNo assigned EC number0.59490.98160.7959yesno
Q05046CH62_CUCMANo assigned EC number0.92900.96790.7356N/Ano
Q2RY28CH601_RHORTNo assigned EC number0.62010.99080.7974yesno
Q05045CH61_CUCMANo assigned EC number0.90780.96790.7356N/Ano
P29185CH61_MAIZENo assigned EC number0.90210.95880.7261N/Ano
C4K2T9CH60_RICPUNo assigned EC number0.61190.96100.7678yesno
Q2KAU2CH602_RHIECNo assigned EC number0.61330.95880.7730yesno
A7HQQ0CH60_PARL1No assigned EC number0.60380.95880.7618yesno
A6U901CH603_SINMWNo assigned EC number0.60130.98390.7933yesno
Q1RIZ3CH60_RICBRNo assigned EC number0.60700.97020.7709yesno
A8GW07CH60_RICB8No assigned EC number0.60700.97020.7709yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
OsI_33923
Os10g0462900 (574 aa)
(Oryza sativa Indica)
Predicted Functional Partners:
OsI_27057
Os07g0641700 (98 aa)
•  •• • 0.903
tufM
Os03g0851100 ; This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site [...] (453 aa)
  ••  • 0.664
OsI_16800
Os04g0538100 (774 aa)
  ••  • 0.639
OsI_01632
Os01g0321300 (978 aa)
      • 0.625
BGIOSIBSE038426
annotation not avaliable (417 aa)
      • 0.609
OsI_31514
Os09g0438700 (245 aa)
• • • • 0.605
tufA
Translational elongation factor Tu (Putative uncharacterized protein); This protein promotes th [...] (546 aa)
  ••  • 0.602
OsI_09178
Os02g0781400 (255 aa)
• •   • 0.593
Fe-SOD
Os06g0143000 ; Destroys radicals which are normally produced within the cells and which are tox [...] (255 aa)
      • 0.563
OsI_09127
Os03g0113700 (676 aa)
  ••  • 0.556

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query437
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 0.0
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 0.0
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 0.0
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 0.0
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 0.0
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 0.0
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 0.0
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 0.0
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 1e-169
CHL00093529 CHL00093, groEL, chaperonin GroEL 1e-153
PLN03167600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 1e-128
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-124
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 8e-92
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 4e-72
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 5e-37
cd03343517 cd03343, cpn60, cpn60 chaperonin family 3e-09
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 7e-08
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 1e-06
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 5e-06
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 2e-05
TIGR02347531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 3e-05
PTZ00212533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 8e-05
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 7e-04
cd03338515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 0.003
TIGR02340536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 0.004
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information 
 Score =  678 bits (1751), Expect = 0.0
 Identities = 265/414 (64%), Positives = 338/414 (81%), Gaps = 1/414 (0%)

Query: 1   MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVG 60
            N MDL+RGI  AV+AVV  LK  ++ + T EEIAQV TISANG+ EIGELIA+AMEKVG
Sbjct: 108 ANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVG 167

Query: 61  KEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNL 120
           K+GVIT+ +GKTL  ELEVVEGM+ DRGY+SPYF+T+ +  + ELE+P IL+ +KKIS++
Sbjct: 168 KDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSI 227

Query: 121 TAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQ 180
             ++ +LEL  K  RPLLI+AEDVE EALATL++NKLR G+KVCA+KAPGFG+ RKA ++
Sbjct: 228 QELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLE 287

Query: 181 DLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240
           D+A+LTGG +I+EELG+ LE V L+ LG  KKV ++KDDT I+ GAGDK +I+ R  QIR
Sbjct: 288 DIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIR 347

Query: 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG 300
             IE +TSDYDKEKLQERLAKLSGGVAV+K+GGA+E E+ EKKDRV DALNAT+AAVEEG
Sbjct: 348 KQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG 407

Query: 301 IVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLL 360
           IVPGGGVALL A+  L+KL   N D+K+G++I++ AL+ P+  IA NAGV+G+VVV K+L
Sbjct: 408 IVPGGGVALLRASPALDKLKALNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVL 467

Query: 361 EQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE 414
           E  +   GYDAA GEYVDM+++GIIDP KV+R+AL +AASV+SL+ TTEA+VV+
Sbjct: 468 ESPD-GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVVD 520

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 437
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
CHL00093529 groEL chaperonin GroEL 100.0
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 99.97
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 99.97
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.44
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 97.94
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=2.1e-88  Score=714.13  Aligned_cols=431  Identities=59%  Similarity=0.919  Sum_probs=411.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHHhccCCcEEEEeCCCcccceeeE
Q 013743            1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV   80 (437)
Q Consensus         1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~ls~lv~~A~~~v~~~g~I~~~~g~~~~ds~~~~   80 (437)
                      +||+.|++||+.|++.++++|+++++|+++.+.|.++|.||+++++.+++++++|+..++++|.|.++.+....|+++++
T Consensus       110 i~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls~lv~~Av~~v~~~g~i~i~~~~~~~~~~~~v  189 (542)
T PRK00013        110 ANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGKLIAEAMEKVGKEGVITVEESKGFETELEVV  189 (542)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHhCcCCcEEEEEcCCCCceEEEE
Confidence            59999999999999999999999999999888999999999988999999999999999988876665555455566999


Q ss_pred             eceEEeecccCcccccccccCceeecCceEEEecccCCCHHHHHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccC
Q 013743           81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG  160 (437)
Q Consensus        81 ~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~  160 (437)
                      +|++|+++|.+|+|.+++++|+..++||+||++|++|++++++.++++++++.|+||||++++|++.|+++|..|+++|+
T Consensus       190 ~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~  269 (542)
T PRK00013        190 EGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGT  269 (542)
T ss_pred             EeEEecCCcccccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCccccCCcCCCcceeEEEEecceEEEEcCCCChhhHHHHHHHHH
Q 013743          161 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR  240 (437)
Q Consensus       161 ~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~~~~l~  240 (437)
                      ++|+|||+|+|++.++++|+|||++||+++++++.+++++++++++||+|+.|++.+++|+||++|++++++..|+++|+
T Consensus       270 ~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~  349 (542)
T PRK00013        270 LKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQIK  349 (542)
T ss_pred             ceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEecCEEEEEeCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999877777999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCchhHHHHhHhhHhhHHHHHHHHHHcCccccchHHHHHHHHHHHhhc
Q 013743          241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLS  320 (437)
Q Consensus       241 ~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~~~l~E~~r~l~dAl~~~~~al~~gvvpGGG~~e~~ls~~L~~~~  320 (437)
                      .+++++.++|++++|+||++||+|+++||+|||+|+.+++|++|+++||++++++++++|+|||||++|+++|..|+++ 
T Consensus       350 ~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g~VpGGGa~e~~~s~~L~~~-  428 (542)
T PRK00013        350 AQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVPGGGVALLRAAPALEAL-  428 (542)
T ss_pred             HHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHHHHHh-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999988 


Q ss_pred             cc-chhHHHHHHHHHHHhhHHHHHHHHHcCCCHHHHHHHHHhhCCCceeEeCCCCccccccccCccccchhHHHHHHHHH
Q 013743          321 TA-NFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAA  399 (437)
Q Consensus       321 ~~-~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~~l~~~~~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~  399 (437)
                      .+ ++++|+++++|++||+.||++||+|||+|+.+++++|++.|++++|||+.+|++.||++.|||||+.||.++|+.|+
T Consensus       429 ~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~  508 (542)
T PRK00013        429 KGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGKGKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAA  508 (542)
T ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHH
Confidence            44 78999999999999999999999999999999999999888778999999999999999999999999999999999


Q ss_pred             HHHHHhhchhhhhhcCCccCCCCCC-CCCCCCCC
Q 013743          400 SVSSLMTTTEAIVVELPKEEKEAPG-GMGGMGGM  432 (437)
Q Consensus       400 e~a~~iL~id~iI~~~~~~~~~~~~-~~~~~~~~  432 (437)
                      ++|++||+||++|..+|+.++.+|. |+||||||
T Consensus       509 ~~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~  542 (542)
T PRK00013        509 SVAGLLLTTEAVVADKPEKKAAAPPMGGGGMGGM  542 (542)
T ss_pred             HHHHHHHHHHHHHhcCCcccCCCCCCCCCCCCCC
Confidence            9999999999999999888766555 88999987

>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query437
1iok_A545 Crystal Structure Of Chaperonin-60 From Paracoccus 1e-132
2eu1_A548 Crystal Structure Of The Chaperonin Groel-E461k Len 1e-117
1aon_A547 Crystal Structure Of The Asymmetric Chaperonin Comp 1e-117
3c9v_A526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 1e-117
1kp8_A547 Structural Basis For Groel-Assisted Protein Folding 1e-117
1gr5_A547 Solution Structure Of Apo Groel By Cryo-Electron Mi 1e-117
1pcq_A524 Crystal Structure Of Groel-Groes Length = 524 1e-117
2yey_A524 Crystal Structure Of The Allosteric-Defective Chape 1e-117
1j4z_A547 Structural And Mechanistic Basis For Allostery In T 1e-117
1sx3_A525 Groel14-(Atpgammas)14 Length = 525 1e-117
4aaq_A548 Atp-Triggered Molecular Mechanics Of The Chaperonin 1e-116
1ss8_A524 Groel Length = 524 1e-116
1grl_A548 The Crystal Structure Of The Bacterial Chaperonin G 1e-116
1oel_A547 Conformational Variability In The Refined Structure 1e-116
3cau_A526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 1e-116
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 1e-109
1sjp_A504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 1e-100
3rtk_A546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 1e-100
1la1_A192 Gro-El Fragment (Apical Domain) Comprising Residues 9e-62
1fya_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 7e-60
1kid_A203 Groel (Hsp60 Class) Fragment (Apical Domain) Compri 1e-59
1fy9_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 1e-59
3osx_A201 Crystal Structure Of Apical Domain Of Insecticidal 2e-57
3m6c_A194 Crystal Structure Of Mycobacterium Tuberculosis Gro 1e-51
1jon_A155 Groel (Hsp60 Class) Fragment Comprising Residues 19 6e-46
1dk7_A146 Crystal Structure Of An Isolated Apical Domain Of G 8e-44
1srv_A145 Thermus Thermophilus Groel (Hsp60 Class) Fragment ( 9e-40
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure 
Iteration: 1

 Score =  469 bits (1208), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/423 (56%), Positives = 308/423 (72%), Gaps = 2/423 (0%)
Query: 1   MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVG 60
           MN MDL+RGI +A   VV  +KS AR ++ S E+AQVGTISANGE  IG+ IA+AM++VG
Sbjct: 111 MNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVG 170
Query: 61  KEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNL 120
            EGVIT+ + K +  E+EVVEGM+ DRGY+SPYF+TN      ELED  IL+HEKK+S+L
Sbjct: 171 NEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSL 230
Query: 121 TAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQ 180
             +V +LE  ++ Q+PLLIVAEDVE EALATL++NKLR G+K+ A+KAPGFG+ RKA +Q
Sbjct: 231 QPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQ 290
Query: 181 DLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240
           D+A+LTGG +I+E+LGM LE V +DMLG  KKV+I+KD+T I+DGAG+K  IE R  QIR
Sbjct: 291 DIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIR 350
Query: 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG 300
             IE +TSDYD+EKLQER+AKL+GGVAV+++GG +E EV E+KDRV DALNAT+AAV+EG
Sbjct: 351 QQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEG 410
Query: 301 IVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLL 360
           IV GGGV            S AN DQ  G+ II+ AL+ P+  I             K+ 
Sbjct: 411 IVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVR 470
Query: 361 EQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEK 420
           E  +   G++A   EY DM K G+IDP KV+RTAL DAASV+ L+ TTEA++ E P  E 
Sbjct: 471 ESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKP--EP 528
Query: 421 EAP 423
           +AP
Sbjct: 529 KAP 531
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues 188-379 Length = 192 Back     alignment and structure
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 191-376, Mutant With Ala 262 Replaced With Leu And Ile 267 Replaced With Met Length = 203 Back     alignment and structure
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel From Xenorhapdus Nematophila Length = 201 Back     alignment and structure
>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1 Apical Domain Length = 194 Back     alignment and structure
>pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345 Length = 155 Back     alignment and structure
>pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel Length = 146 Back     alignment and structure
>pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 192-336 Length = 145 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query437
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 0.0
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 0.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 0.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 0.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 1e-108
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 1e-106
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 1e-70
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 2e-12
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 6e-12
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 3e-11
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 1e-10
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 2e-10
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 1e-09
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 2e-09
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 5e-09
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 9e-09
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 9e-08
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 9e-07
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 1e-06
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 1e-06
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 1e-06
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 1e-06
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 1e-06
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 2e-06
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 2e-06
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 6e-06
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 5e-05
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 3e-04
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
 Score =  671 bits (1733), Expect = 0.0
 Identities = 263/435 (60%), Positives = 335/435 (77%), Gaps = 1/435 (0%)

Query: 1   MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVG 60
           MN MDL+RGI +A   VV  +KS AR ++ S E+AQVGTISANGE  IG+ IA+AM++VG
Sbjct: 111 MNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVG 170

Query: 61  KEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNL 120
            EGVIT+ + K +  E+EVVEGM+ DRGY+SPYF+TN      ELED  IL+HEKK+S+L
Sbjct: 171 NEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSL 230

Query: 121 TAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQ 180
             +V +LE  ++ Q+PLLIVAEDVE EALATL++NKLR G+K+ A+KAPGFG+ RKA +Q
Sbjct: 231 QPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQ 290

Query: 181 DLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR 240
           D+A+LTGG +I+E+LGM LE V +DMLG  KKV+I+KD+T I+DGAG+K  IE R  QIR
Sbjct: 291 DIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIR 350

Query: 241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEG 300
             IE +TSDYD+EKLQER+AKL+GGVAV+++GG +E EV E+KDRV DALNAT+AAV+EG
Sbjct: 351 QQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEG 410

Query: 301 IVPGGGVALLYAAKELEKLSTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLL 360
           IV GGGVAL+  AK LE LS AN DQ  G+ II+ AL+ P+  IA NAGV+GAVV GK+ 
Sbjct: 411 IVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVR 470

Query: 361 EQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEK 420
           E  +   G++A   EY DM K G+IDP KV+RTAL DAASV+ L+ TTEA++ E P+ + 
Sbjct: 471 ESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKPEPKA 530

Query: 421 EAPGGMGGMGGMGGM 435
            A  GM  MGGMGGM
Sbjct: 531 PAG-GMPDMGGMGGM 544
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Length = 201 Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Length = 194 Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Length = 145 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query437
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 100.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 100.0
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 99.93
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.86
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
Probab=100.00  E-value=8.6e-95  Score=761.24  Aligned_cols=435  Identities=55%  Similarity=0.858  Sum_probs=406.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHHhccCCcEEEEeCCCcccceeeE
Q 013743            1 MNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVV   80 (437)
Q Consensus         1 ~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~ls~lv~~A~~~v~~~g~I~~~~g~~~~ds~~~~   80 (437)
                      +||+.|++||++|++.++++|+++++|+++.+.|.++|++|+++++++++++++|+.+++++|.|.+++|++++|+++++
T Consensus       110 ihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~e~l~~vA~iS~~~~~~i~~liadAv~~V~~dg~I~Ve~G~~~~ds~~lv  189 (547)
T 1kp8_A          110 MNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVV  189 (547)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHCBCCCSHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTSEEEEECCSSSSCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHhccchhHHHHHHHHHHHHhCcCCcEEEEeCCccccccEEE
Confidence            59999999999999999999999999999999999999999998999999999999999999999999999999999999


Q ss_pred             eceEEeecccCcccccccccCceeecCceEEEecccCCCHHHHHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHcccccC
Q 013743           81 EGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKLRAG  160 (437)
Q Consensus        81 ~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i~~~  160 (437)
                      +|++|+++|.||||++++++|+..++||+||++|++|+++++++++++++.++|+||||++++|+++|+++|+.|+++|.
T Consensus       190 eG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~~Is~~~~l~~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~  269 (547)
T 1kp8_A          190 EGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGI  269 (547)
T ss_dssp             SCEEESCCBSSTTCCSBTTTTBEEEESCEEECEESEECCGGGTHHHHHHHHGGGCCEEEEESEECHHHHHHHHHHGGGTS
T ss_pred             ecEEEecCccccccccCcccCceEecCceEEEEcCcCCCHHHHHHHHHHHHhcCCCEEEECCCcCHHHHHHHHhcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCccccCCcCCCcceeEEEEecceEEEEcCCCChhhHHHHHHHHH
Q 013743          161 IKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIR  240 (437)
Q Consensus       161 ~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~~~~l~  240 (437)
                      ++|+|||+|+|++.++++|+|||++|||++++++.+++++++++++||+|++|++++++|+||++|+++++++.|+++|+
T Consensus       270 ~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~g~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~r~~~i~  349 (547)
T 1kp8_A          270 VKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIR  349 (547)
T ss_dssp             SCEEEEECSSCHHHHHHHHHHHHHHHTCCCEEGGGTCCSTTCCTTTSEEEEEEEECSSCEEEEEECCCHHHHHHHHHHHH
T ss_pred             eeEEEEeccccccccHHHHHHHHHHhCCeEecccccCCcccCCHHHCCceeEEEEccceEEEEcCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCChHHHHHHHHHHHhhcCCeEEEEecCCchhHHHHhHhhHhhHHHHHHHHHHcCccccchHHHHHHHHHHHhhc
Q 013743          241 SAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLS  320 (437)
Q Consensus       241 ~~l~~~~~~~~~~~l~~rl~rl~g~~~tI~v~G~t~~~l~E~~r~l~dAl~~~~~al~~gvvpGGG~~e~~ls~~L~~~~  320 (437)
                      .+++.+.|+|++++|+||+++|+|++|||+|||+|+.+++|+||+++|||+++|+++++|+|||||++|++++..|++++
T Consensus       350 ~~~~~~~s~~~~ekl~erlakl~~~~~tI~vrG~te~~l~E~kr~i~DAl~~~r~av~~giVpGGGa~e~~~s~~L~~~~  429 (547)
T 1kp8_A          350 QQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLR  429 (547)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHCEEETTTHHHHHHHHHTTTCC
T ss_pred             HHhhcccchhhHHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHHHHHHHHhccCCEEeCCcHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             ccchhHHHHHHHHHHHhhHHHHHHHHHcCCCHHHHHHHHHhhCCCceeEeCCCCccccccccCccccchhHHHHHHHHHH
Q 013743          321 TANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAAS  400 (437)
Q Consensus       321 ~~~~~~~~~~~~~a~AL~~ip~~L~~NaG~d~~~v~~~l~~~~~~~~Gid~~~g~i~d~~~~gI~Dp~~vk~~aL~~A~e  400 (437)
                      ..++.+|+++++|++||+.||++||+|||+|+.+++++|++. +.++|||+.+|++.||++.|||||+.||+++|+.|+|
T Consensus       430 ~~~g~~q~~i~~~a~ALe~ip~~la~NaG~d~~~vv~~l~~~-~~~~G~d~~~g~~~dm~~~gI~Dp~~vk~~al~~A~~  508 (547)
T 1kp8_A          430 GQNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGG-DGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAAS  508 (547)
T ss_dssp             CSSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHS-CTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHH
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc-CCCEeEeCCCCccccchhcCceechHhHHHHHHHHHH
Confidence            657899999999999999999999999999999999999976 5789999999999999999999999999999999999


Q ss_pred             HHHHhhchhhhhhcCCccCCC-CCC--CCCCCCCCCCCC
Q 013743          401 VSSLMTTTEAIVVELPKEEKE-APG--GMGGMGGMGGMD  436 (437)
Q Consensus       401 ~a~~iL~id~iI~~~~~~~~~-~~~--~~~~~~~~~~~~  436 (437)
                      +|++|||||++|...|+++++ .|+  ||||||||+|||
T Consensus       509 ~A~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (547)
T 1kp8_A          509 VAGLMITTECMVTDLPKNDAADLGAAGGMGGMGGMGGMM  547 (547)
T ss_dssp             HHHHHHTEEEEEEECCC----------------------
T ss_pred             HHHHHHhHhheeecCCccCCCCCCCCCCCCCCCCCCCCC
Confidence            999999999999998876633 232  456777777764
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 437
d1kida_193 c.8.5.1 (A:) GroEL, A domain {Escherichia coli [Ta 5e-92
d1ioka2176 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus de 3e-89
d1sjpa2184 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium 2e-87
d1srva_145 c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus 9e-69
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 8e-44
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 1e-10
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 3e-35
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 6e-20
d1sjpa389 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My 3e-30
d1sjpa389 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My 5e-04
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 3e-27
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 4e-13
d1we3a386 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th 1e-24
d1we3a386 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th 8e-04
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 1e-21
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 3e-10
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 1e-19
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 2e-11
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 1e-19
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 3e-19
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 9e-17
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 4e-16
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 4e-11
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Length = 193 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Escherichia coli [TaxId: 562]

 Score =  274 bits (702), Expect = 5e-92
 Identities = 108/191 (56%), Positives = 142/191 (74%)

Query: 76  ELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQR 135
                EGM+ DRGY+SPYFI   +    ELE P IL+ +KKISN+  ++ VLE   K  +
Sbjct: 3   VPRGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGK 62

Query: 136 PLLIVAEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEEL 195
           PLLI+AEDVE EALATL++N +R  +KV A+KAPGFG+ RKA +QD+A LTGG +I+EE+
Sbjct: 63  PLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEI 122

Query: 196 GMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKL 255
           GM+LEK  L+ LG  K+V I+KD T I+DG G++ +I+ R  QIR  IE +TSDYD+EKL
Sbjct: 123 GMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKL 182

Query: 256 QERLAKLSGGV 266
           QER+AKL+GGV
Sbjct: 183 QERVAKLAGGV 193
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Length = 176 Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 184 Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Length = 145 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query437
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 100.0
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 100.0
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 100.0
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 99.97
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 99.94
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 99.9
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.89
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 99.88
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.85
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.85
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.84
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.83
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.81
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 99.81
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.67
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 99.4
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 99.11
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 99.03
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 98.91
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 98.81
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 98.74
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 98.72
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 98.06
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 97.02
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 97.01
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 96.99
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 96.85
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 96.06
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 90.3
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 88.1
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 84.48
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.9e-40  Score=301.13  Aligned_cols=189  Identities=57%  Similarity=0.921  Sum_probs=184.9

Q ss_pred             eeEeceEEeecccCcccccccccCceeecCceEEEecccCCCHHHHHHHHHHHHhcCCCEEEEecCCcHHHHHHHHHccc
Q 013743           78 EVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLIVAEDVESEALATLILNKL  157 (437)
Q Consensus        78 ~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~Ill~d~~i~~~~~l~~~le~i~~~~~~lvi~~~~i~~~al~~l~~n~i  157 (437)
                      ++.+|+.|++||.||||+|+.+++.++++||+||++|.+|+++++++|+||.+.+.+.||||++++|+++||+.|+.|+.
T Consensus         5 ~~tEG~~~d~Gy~SpyFvtd~~~~~~~l~~p~ILitd~kI~~~~~i~p~Le~~~~~~~pLlIIA~di~~~aL~~Lv~N~~   84 (193)
T d1kida_           5 RGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTM   84 (193)
T ss_dssp             SCCCCEEESCCCSCGGGCCBTTTTBEEEESCEEEEBSSEECCHHHHHHHHHHHHHHTCCEEEEESEECHHHHHHHHHHHH
T ss_pred             cccCCeeecCCcCCccceeCCCCCEEEecCcEEEEEcCCcccHHHHHHHHHHHHhhCCcEEEEeccccHHHHHHHHHhhh
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCceEEEEecCCCCcchhhhHHHHHHHhCCeEeccCcCCccccCCcCCCcceeEEEEecceEEEEcCCCChhhHHHHHH
Q 013743          158 RAGIKVCAIKAPGFGENRKANMQDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCE  237 (437)
Q Consensus       158 ~~~~~v~aV~~~~~~~~~~~~le~la~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~~~~  237 (437)
                      +|.++|||||+|+||+.+++.|+|||.+|||++++.+.+.++++++.++||+|++|.+++++|+++.+.++++.+++|++
T Consensus        85 kg~l~v~aVkaPgfG~~r~~~LeDlA~~TGa~vi~~~~g~~l~~~~~~~LG~~~kv~itk~~T~ii~g~g~~~~I~~Ri~  164 (193)
T d1kida_          85 RGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVA  164 (193)
T ss_dssp             TTSCCEEEEECCSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHHH
T ss_pred             ccCcceeeccCCCcChhHHHHHHHHHHHcCCEEechhcccccccCCHhHcCcccEEEEecCceEEEcCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHHHHHhhcCCe
Q 013743          238 QIRSAIENSTSDYDKEKLQERLAKLSGGV  266 (437)
Q Consensus       238 ~l~~~l~~~~~~~~~~~l~~rl~rl~g~~  266 (437)
                      +|+.+++++.++|++++|++||+||+|++
T Consensus       165 ~Lk~~l~~~~~~~~~e~L~eRlakLsGGV  193 (193)
T d1kida_         165 QIRQQIEEATSDYDREKLQERVAKLAGGV  193 (193)
T ss_dssp             HHHHHHHHCCSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999874
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure