Citrus Sinensis ID: 013758

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------
Protein Sequence
MALHLFKPKHRSLTNPSLIHLFSTSQNDNNDNNNNYSNSSLNSYFSDVKASLRKQTPPNQTTSSSSSSSRGPPSKVASLEEIRRNLAEFRQRSTVPPPIESNSTESQSQSQTQSQSQSQHISFQELYKRNTVNETLASKPSGKPSFEAIRESLRQMRARSNNDNNNNNRGNGVKNSDPLSLKNFTNTLRMKPADDNAHRVIGGSQELPALVFGKEKKEEEKAVELERMKTDFVKMYSFEELGDKLKKLRPEGLEGGFSLRELNERLMRLRVMEMNESNSKIGAGTISALRSSLARIQIEKEEKARVQRINILEGFGGTPEYLLHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSALHKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSKLGLRDNPDYKSLA
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccEcccccccccccccEEEEEEEccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHccccccccccccccccccccccHHHccccccccccccHccccccccccccccccHHHcHHcccccccccccHHHHHHHHcccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccHcccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccHHHHHcc
Coil and Loop (DISEMBL)
malhlfkpkhrsltnpslihlfstsqndnndnnnnysnsslNSYFsdvkaslrkqtppnqttsssssssrgppskvaSLEEIRRNLAEFrqrstvpppiesnstesqsqsqtqsqsqsQHISFQELYKRntvnetlaskpsgkpSFEAIRESLRQMRARsnndnnnnnrgngvknsdplslknftntlrmkpaddnahrviggsqelpalvfgkeKKEEEKAVELERMKTDFVKMYSFEELGDKLKKlrpegleggfSLRELNERLMRLRVMEMnesnskigaGTISALRSSLARIQIEKEEKARVQRINILegfggtpeyllhppkehlvekyfhpdnmssAEKMKIELAKVREEFkmsesdcgSARVQIAQLTTKIKHLSSAlhkkdkhsrKGLQAMVQRRKRLLKYLRRTDWDSYCFVLsklglrdnpdyksla
Flexible Loop (DISEMBL)
malhlfkpkhrsltnpSLIHLFSTSQNDNNDNNNNYSNSSLNSYFSDVKASLRKQtppnqttsssssssrgppskVASLEEIRRNLAEFRQRSTVPPPIESNSTESQSQSQTQSQSQSQHISFQELYKRNTVnetlaskpsgkpsfEAIRESLRQMRArsnndnnnnnrgngvknsdplSLKNFTNTLRMKPADDNAHRVIGGsqelpalvfgkekkEEEKAVElermktdfvkmySFEELGDKLKKlrpegleggfslrELNERLMRLRVMEMnesnskigagtiSALRSSLARIQIEKEEKARVQRINILEGFGGTPEYLLHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLssalhkkdkhsrkglqamVQRRKRLLkylrrtdwdsycfvlsklglrdnpdyksla
Low Complexity Region (SEG)
MALHLFKPKHRSLTNPSLIHLFstsqndnndnnnnysnsslnsyfsdVKASLRKQTPPNQTTsssssssRGPPSKVASLEEIRRNLAEFRQRSTVPPPIesnstesqsqsqtqsqsqsqHISFQELYKRNTVNETLASKPSGKPSFEAIRESLRQMRArsnndnnnnnrgngvknsdPLSLKNFTNTLRMKPADDNAHRVIGGSQELPALVFGkekkeeekAVELERMKTDFVKMYSFEELGDKLKKLRPEGLEGGFSlrelnerlmrlrvmemneSNSKIGAGTISALRSSLARIQIEKEEKARVQRINILEGFGGTPEYLLHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSALHKKDKHSRKGLQAMVQrrkrllkylrrTDWDSYCFVLSKLGLRDNPDYKSLA
Disordered region (IsUnstruct)
*************************************************************************************************************************************************************************************************************************************TDFVKMYSFEELG**************************************************LARIQIE***KARVQRINILEGFGGTPEYLLHPPKEHLVEKYF**********************************QIAQLTT**********************MVQRRKRLLKYLRRTDWDSYCFVLSKLGL**********
Disordered Region (DISOPRED)
*****************************************************************************************************************************************************************************************************************************************KMYSFEELGDKLKKLRPEGLEGGFSLRELNERL********************SALRSS****************************YLLHPPKEHLVEKYFHP*************AKVREEFKMSESDCGSARVQIAQLTTKIKHLSSALHKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSKLGLRDN*******
Disordered Region (DISEMBL)
********KHRSLTNPSLIHLFSTSQNDNNDNNNNYSNSSLNSYFSDVKAS**************************SLEEIRRNLAEFRQRSTVP*************************SFQELYKRNTVNETLASKPSGKPSFEAIRESLRQMRARSNNDNNNNNRGNGVKNSDPLSLKNFTNTLRMKPADDNAHRVIGGSQELPALVFGKEKKEEEKAVELERMKTDFVKMYSFEELGDKLKKLRPEGLEGGFSLRELNERLMRLRVMEMNESNSKIGAGTISALRSSLARIQIEKEEKARVQRINILEGFGGTPEYLLHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREE***********RVQIAQLTTKIK*****************QAMVQRRKRLLKYLRRTDWDSYCFVLSKLGLRDNPDYKSLA
Disordered Region (DISPRO)
***********SLTNPSLIHLFSTS*************************************************************AEFRQRST***********************************************************************************************************************************ERMKTDFVKMYSFEELGDKLKKLRPEGLEGGFSLRELNERLMRLRVMEMNESNSKIGAGTISALRSSLARIQIEKEEKARVQRINILEGFGGTPEYLLHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSALHKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSKLGLRDNPDYK*LA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALHLFKPKHRSLTNPSLIHLFSTSQNDNNDNNNNYSNSSLNSYFSDVKASLRKQTPPNQTTSSSSSSSRGPPSKVASLEEIRRNLAEFRQRSTVPPPIESNSTESQSQSQTQSQSQSQHISFQELYKRNTVNETLASKPSGKPSFEAIRESLRQMRARSNNDNNNNNRGNGVKNSDPLSLKNFTNTLRMKPADDNAHRVIGGSQELPALVFGKEKKEEEKAVELERMKTDFVKMYSFEELGDKLKKLRPEGLEGGFSLRELNERLMRLRVMEMNESNSKIGAGTISALRSSLARIQIEKEEKARVQRINILEGFGGTPEYLLHPPKEHLVEKYFHPDNMSSxxxxxxxxxxxxxxxxxxxxxCGSARVQIAQLTTKIKHLSSALHKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSKLGLRDNPDYKSLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	437	2.2.26 [Sep-21-2011]
B7IFB5	84	30S ribosomal protein S15	yes	no	0.173	0.904	0.538	9e-15
A6LJ39	84	30S ribosomal protein S15	yes	no	0.173	0.904	0.512	3e-14
Q7VKX3	89	30S ribosomal protein S15	yes	no	0.178	0.876	0.512	6e-14
Q5WT39	91	30S ribosomal protein S15	yes	no	0.194	0.934	0.445	7e-14
Q5ZRV7	91	30S ribosomal protein S15	yes	no	0.194	0.934	0.445	7e-14
A5IHU4	91	30S ribosomal protein S15	yes	no	0.194	0.934	0.445	7e-14
A6VQB6	89	30S ribosomal protein S15	yes	no	0.178	0.876	0.512	1e-13
B8F5Z2	89	30S ribosomal protein S15	yes	no	0.178	0.876	0.512	1e-13
B0BPU4	89	30S ribosomal protein S15	yes	no	0.178	0.876	0.512	1e-13
B3H1N7	89	30S ribosomal protein S15	yes	no	0.178	0.876	0.512	1e-13

>sp|B7IFB5|RS15_THEAB 30S ribosomal protein S15 OS=Thermosipho africanus (strain TCF52B) GN=rpsO PE=3 SV=1

 Score = 82.0 bits (201), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 55/78 (70%), Gaps = 2/78 (2%)

Query: 353 VREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYL 410
           + +EF++ E D GS  VQIA LT +IKHL+  L  H KD HSR+GL  +V RR+++LKYL
Sbjct: 6   IIKEFQIHEGDTGSTEVQIALLTARIKHLTEHLKKHPKDYHSRRGLMKLVGRRRKILKYL 65

Query: 411 RRTDWDSYCFVLSKLGLR 428
           R  D +SY  V+ KLGLR
Sbjct: 66  RNKDPESYKNVIQKLGLR 83

Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
Thermosipho africanus (strain TCF52B) (taxid: 484019)

>sp|A6LJ39|RS15_THEM4 30S ribosomal protein S15 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rpsO PE=3 SV=1

 Score = 80.1 bits (196), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 56/78 (71%), Gaps = 2/78 (2%)

Query: 353 VREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYL 410
           + +EF++ E D GSA VQ+A LT +IKHL+  L  H KD HSR+GL  +V RR+++LKYL
Sbjct: 6   IIKEFQIHEGDTGSAEVQVALLTARIKHLTEHLKKHPKDYHSRRGLMKLVGRRRKILKYL 65

Query: 411 RRTDWDSYCFVLSKLGLR 428
           R  + ++Y  V+ KLGLR
Sbjct: 66  RNKNPEAYKEVIQKLGLR 83

Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.

Thermosipho melanesiensis (strain BI429 / DSM 12029) (taxid: 391009)

>sp|Q7VKX3|RS15_HAEDU 30S ribosomal protein S15 OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) GN=rpsO PE=3 SV=1

 Score = 79.0 bits (193), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 52/80 (65%), Gaps = 2/80 (2%)

Query: 351 AKVREEFKMSESDCGSARVQIAQLTTKIKHLSS--ALHKKDKHSRKGLQAMVQRRKRLLK 408
           AK+  EF     D GS+ VQIA LT +I HL +  A HKKD H R+GL  MV RR++LL 
Sbjct: 9   AKIVSEFGRDAKDTGSSEVQIALLTAQINHLQTHFATHKKDHHGRRGLLRMVSRRRKLLD 68

Query: 409 YLRRTDWDSYCFVLSKLGLR 428
           YL+RTD   Y   +++LGLR
Sbjct: 69  YLKRTDLAKYSETIARLGLR 88

Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.

Haemophilus ducreyi (strain 35000HP / ATCC 700724) (taxid: 233412)

>sp|Q5WT39|RS15_LEGPL 30S ribosomal protein S15 OS=Legionella pneumophila (strain Lens) GN=rpsO PE=3 SV=1

 Score = 79.0 bits (193), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 63/92 (68%), Gaps = 7/92 (7%)

Query: 340 MSSAEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQ 397
           ++SAEK     A++  E+K  + D GS  VQ++ +T++IK+L+     +KKD HSR+GLQ
Sbjct: 3   LNSAEK-----AEIINEYKRGDKDTGSPEVQVSLITSRIKYLTDHFKENKKDFHSRRGLQ 57

Query: 398 AMVQRRKRLLKYLRRTDWDSYCFVLSKLGLRD 429
            +V +R++LLKYL+R D D Y  ++  LGLRD
Sbjct: 58  ELVNKRRKLLKYLKRNDQDRYQTLIQNLGLRD 89

Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.

Legionella pneumophila (strain Lens) (taxid: 297245)

>sp|Q5ZRV7|RS15_LEGPH 30S ribosomal protein S15 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=rpsO PE=3 SV=1

 Score = 79.0 bits (193), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 63/92 (68%), Gaps = 7/92 (7%)

Query: 340 MSSAEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQ 397
           ++SAEK     A++  E+K  + D GS  VQ++ +T++IK+L+     +KKD HSR+GLQ
Sbjct: 3   LNSAEK-----AEIINEYKRGDKDTGSPEVQVSLITSRIKYLTDHFKENKKDFHSRRGLQ 57

Query: 398 AMVQRRKRLLKYLRRTDWDSYCFVLSKLGLRD 429
            +V +R++LLKYL+R D D Y  ++  LGLRD
Sbjct: 58  ELVNKRRKLLKYLKRNDQDRYQTLIQNLGLRD 89

Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.

Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) (taxid: 272624)

>sp|A5IHU4|RS15_LEGPC 30S ribosomal protein S15 OS=Legionella pneumophila (strain Corby) GN=rpsO PE=3 SV=1

 Score = 79.0 bits (193), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 63/92 (68%), Gaps = 7/92 (7%)

Query: 340 MSSAEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQ 397
           ++SAEK     A++  E+K  + D GS  VQ++ +T++IK+L+     +KKD HSR+GLQ
Sbjct: 3   LNSAEK-----AEIINEYKRGDKDTGSPEVQVSLITSRIKYLTDHFKENKKDFHSRRGLQ 57

Query: 398 AMVQRRKRLLKYLRRTDWDSYCFVLSKLGLRD 429
            +V +R++LLKYL+R D D Y  ++  LGLRD
Sbjct: 58  ELVNKRRKLLKYLKRNDQDRYQTLIQNLGLRD 89

Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.

Legionella pneumophila (strain Corby) (taxid: 400673)

>sp|A6VQB6|RS15_ACTSZ 30S ribosomal protein S15 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rpsO PE=3 SV=1

 Score = 78.6 bits (192), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 52/80 (65%), Gaps = 2/80 (2%)

Query: 351 AKVREEFKMSESDCGSARVQIAQLTTKIKHLSS--ALHKKDKHSRKGLQAMVQRRKRLLK 408
           A +  EF     D GS+ VQIA LT +I HL S  A HKKD H R+GL  MV RR++LL 
Sbjct: 9   AAIVAEFGRDAKDTGSSEVQIALLTAQINHLQSHFAEHKKDHHGRRGLLRMVSRRRKLLD 68

Query: 409 YLRRTDWDSYCFVLSKLGLR 428
           YL+RTD   Y  ++++LGLR
Sbjct: 69  YLKRTDLAKYSEIIARLGLR 88

Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.

Actinobacillus succinogenes (strain ATCC 55618 / 130Z) (taxid: 339671)

>sp|B8F5Z2|RS15_HAEPS 30S ribosomal protein S15 OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=rpsO PE=3 SV=1

 Score = 78.2 bits (191), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 52/80 (65%), Gaps = 2/80 (2%)

Query: 351 AKVREEFKMSESDCGSARVQIAQLTTKIKHLSS--ALHKKDKHSRKGLQAMVQRRKRLLK 408
           AK+  EF     D GS+ VQIA LT +I HL +  A HKKD H R+GL  MV RR++LL 
Sbjct: 9   AKIVAEFGRDAKDTGSSEVQIALLTAQINHLQAHFAEHKKDHHGRRGLLRMVSRRRKLLD 68

Query: 409 YLRRTDWDSYCFVLSKLGLR 428
           YL+RTD   Y   +++LGLR
Sbjct: 69  YLKRTDLAKYSETIARLGLR 88

Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.

Haemophilus parasuis serovar 5 (strain SH0165) (taxid: 557723)

>sp|B0BPU4|RS15_ACTPJ 30S ribosomal protein S15 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rpsO PE=3 SV=1

 Score = 78.2 bits (191), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 52/80 (65%), Gaps = 2/80 (2%)

Query: 351 AKVREEFKMSESDCGSARVQIAQLTTKIKHLSS--ALHKKDKHSRKGLQAMVQRRKRLLK 408
           AK+  EF     D GS+ VQIA LT +I HL +  A HKKD H R+GL  MV RR++LL 
Sbjct: 9   AKIVAEFGRDAKDTGSSEVQIALLTAQINHLQAHFAEHKKDHHGRRGLLRMVSRRRKLLD 68

Query: 409 YLRRTDWDSYCFVLSKLGLR 428
           YL+RTD   Y   +++LGLR
Sbjct: 69  YLKRTDLAKYSETIARLGLR 88

Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.

Actinobacillus pleuropneumoniae serotype 3 (strain JL03) (taxid: 434271)

>sp|B3H1N7|RS15_ACTP7 30S ribosomal protein S15 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rpsO PE=3 SV=1

 Score = 78.2 bits (191), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 52/80 (65%), Gaps = 2/80 (2%)

Query: 351 AKVREEFKMSESDCGSARVQIAQLTTKIKHLSS--ALHKKDKHSRKGLQAMVQRRKRLLK 408
           AK+  EF     D GS+ VQIA LT +I HL +  A HKKD H R+GL  MV RR++LL 
Sbjct: 9   AKIVAEFGRDAKDTGSSEVQIALLTAQINHLQAHFAEHKKDHHGRRGLLRMVSRRRKLLD 68

Query: 409 YLRRTDWDSYCFVLSKLGLR 428
           YL+RTD   Y   +++LGLR
Sbjct: 69  YLKRTDLAKYSETIARLGLR 88

Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.

Actinobacillus pleuropneumoniae serotype 7 (strain AP76) (taxid: 537457)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	437
255579194	461	structural constituent of ribosome, puta	0.956	0.906	0.539	1e-122
449468960	449	PREDICTED: uncharacterized protein LOC10	0.949	0.924	0.520	1e-116
449520783	449	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.945	0.919	0.518	1e-115
224072669	470	predicted protein [Populus trichocarpa]	0.961	0.893	0.517	1e-114
359489144	443	PREDICTED: uncharacterized protein LOC10	0.933	0.920	0.557	1e-111
30699526	414	S15/NS1, RNA-binding protein [Arabidopsi	0.908	0.958	0.48	5e-93
297842803	413	ribosomal protein S15 family protein [Ar	0.887	0.939	0.469	5e-91
18394286	419	S15/NS1, RNA-binding protein [Arabidopsi	0.899	0.937	0.440	3e-84
297844488	434	ribosomal protein S15 family protein [Ar	0.910	0.917	0.445	4e-79
356522302	391	PREDICTED: uncharacterized protein LOC10	0.727	0.813	0.454	5e-78

>gi|255579194|ref|XP_002530443.1| structural constituent of ribosome, putative [Ricinus communis] gi|223529988|gb|EEF31913.1| structural constituent of ribosome, putative [Ricinus communis]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 258/478 (53%), Positives = 325/478 (67%), Gaps = 60/478 (12%)

Query: 1   MALHLFKPKHRSLTNPSLIHLFSTS--QNDN----------NDNNNNYSNSSLNSYFSDV 48
           MAL + +PKHRSLTNPSLIHLFSTS  QNDN                   +S +SYFSDV
Sbjct: 1   MALSITRPKHRSLTNPSLIHLFSTSSSQNDNASLSPPSQEQQQQQQQQQQTSFSSYFSDV 60

Query: 49  KASLRKQT-----------PPNQTTSSSSSSSRGPPSKVASLEEIRRNLAEFRQRSTVPP 97
           KASL++Q            PP +T +S S     P SK+ASLEEI++NLAE+R RS+VPP
Sbjct: 61  KASLKQQQQDPQSQNKPNFPPLRTPASISK----PTSKIASLEEIKKNLAEYRLRSSVPP 116

Query: 98  PIESNSTESQSQSQTQSQSQSQHISFQELYKRNTVNET-----------LASKP-SGKPS 145
           P ES+S    +    Q Q Q+QHISFQ+LYKRN + ++            ++KP SG+ S
Sbjct: 117 PTESSSF--NTTFSDQQQRQTQHISFQDLYKRNMIGKSENFSGSDNGSNKSNKPASGRFS 174

Query: 146 FEAIRESLRQMRARSNNDNNNNNRGNGVKNSDPLSLKNFTNTLRM-KPADDNAHRVIGGS 204
            +AIRESLRQM++ +N   + + R +G    D +S     ++L++ K  +     V+GGS
Sbjct: 175 MDAIRESLRQMKSNANTKIDGSRRNDG----DAMSFSGSRSSLKLSKEIESLKSSVVGGS 230

Query: 205 QELPALVFGKEKKEEEKAVELERMKTDFVKMYSFEELGDKLKKLRPE---GLEGGFSLRE 261
             +P+LV   +++  +       M T+F K YS+ ELG+KL  LR E   G +G FSL E
Sbjct: 231 GGMPSLVSVNKQRNVQGG-----MSTEFRKAYSYGELGEKLMSLRSEVKEGEKGWFSLEE 285

Query: 262 LNERLMRLRVMEMNESNSKIGAGTISALRSSLARIQIEKEEKARV--QRINILEGFGGTP 319
           LNERL +LR +E  E  S+IG G  S +R SL +++ EK EK+ +  QR+N+   F  TP
Sbjct: 286 LNERLRKLREIEEKEYESRIG-GYYSGIRESLIKLKDEKAEKSSIPIQRLNL---FSTTP 341

Query: 320 EYLLHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIK 379
           +++ +PPKEHLVEKYFHPDNMSSAEKMKI L+KVREEFKMSESDCGSARVQ+AQLTTKIK
Sbjct: 342 DFMQYPPKEHLVEKYFHPDNMSSAEKMKIGLSKVREEFKMSESDCGSARVQVAQLTTKIK 401

Query: 380 HLSSALHKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSKLGLRDNPDYKSLA 437
           HLSS LHKKDKHSRKGLQ MVQ+RK+LLKYLRRTDWDSYCFVLSKLGLRDNPD+K LA
Sbjct: 402 HLSSVLHKKDKHSRKGLQEMVQKRKKLLKYLRRTDWDSYCFVLSKLGLRDNPDFKYLA 459

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468960|ref|XP_004152189.1| PREDICTED: uncharacterized protein LOC101212028 [Cucumis sativus]

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 244/469 (52%), Positives = 328/469 (69%), Gaps = 54/469 (11%)

Query: 1   MALHL-FKPKH-RSLTNPSLIHLFSTSQNDNNDNNNNYSN-------SSLNSYFSDVKAS 51
           MAL L FKPK  ++LTNPSLIHLFS++ +  +D N+  ++       SS++SY SDV+A 
Sbjct: 1   MALQLTFKPKTPKTLTNPSLIHLFSSNSSAPSDPNDETADTSTASPRSSISSYLSDVRAR 60

Query: 52  LRKQ-----TP----PNQTTSSSSSSSRGPPSKVASLEEIRRNLAEFRQRSTVPPPIESN 102
           L++      +P    P  + +S  + S  P SK ASLEEIR+NL+EFR RS+VPPP +  
Sbjct: 61  LKQDQQFSSSPSARRPADSFTSPFNRSTSPASKAASLEEIRKNLSEFRNRSSVPPPSDLG 120

Query: 103 STESQSQSQTQSQSQSQHISFQELYKRNTV------NETLASKPSGK---PSFEAIRESL 153
           ST S S S  +       ISFQ+LYK N++      N+  A+   G      F++I+ESL
Sbjct: 121 STPSSSSSWQRG------ISFQDLYKNNSMRKGEDSNDAPANSTGGGRIGMPFDSIKESL 174

Query: 154 RQMRARSNNDNNNNNRG--NGVKNSDPLSLKNFTNTLRMKPADDNAHRVIGGSQELPALV 211
           R++         ++ RG  + +K+ D LSL  F ++L++KP+D     V+GG++ LP  V
Sbjct: 175 RKV---------SSARGMQSELKSGDSLSLSAFKDSLKLKPSDP----VMGGTERLPVSV 221

Query: 212 FGKEKKEEEKAVELERMKTDFVKMYSFEELGDKLKKLRPEGLEG--GFSLRELNERLMRL 269
           FGKE KE++    +  +KT+FVKMYS++ELG+KL+ LRP+  +G   FSL ELN+RL++L
Sbjct: 222 FGKEMKEKKDGKNVG-LKTEFVKMYSYDELGNKLRNLRPDKEKGKNWFSLTELNDRLVKL 280

Query: 270 RVMEMNESNSKIGAGTISALRSSLARIQI---EKEEKARVQRINILEGFGGTPEYLLHPP 326
           R ME  E+ S+IG  +   LR+SL +++I   E+E+KA +QR++I+     TP Y+L PP
Sbjct: 281 RTMEEKETESRIGGISFQDLRASLMQMKISDDEREKKATLQRLDIMGQLVRTPNYMLEPP 340

Query: 327 KEHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSALH 386
            EHLVEKYFHPDNMSSAEKMKIELAKVRE+FKMSESDCGSARVQ+AQLTTKI HL++ LH
Sbjct: 341 NEHLVEKYFHPDNMSSAEKMKIELAKVREKFKMSESDCGSARVQVAQLTTKINHLTAVLH 400

Query: 387 KKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSKLGLRDNPDYKS 435
           KKDKHS+KGL  MVQ+RK+LLKYLRRTDWDSYC +L+ LGLRDNPDYK+
Sbjct: 401 KKDKHSKKGLLGMVQQRKKLLKYLRRTDWDSYCMILNTLGLRDNPDYKA 449

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520783|ref|XP_004167412.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101229401 [Cucumis sativus]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 244/471 (51%), Positives = 327/471 (69%), Gaps = 58/471 (12%)

Query: 1   MALHL-FKPKH-RSLTNPSLIHLFSTSQNDNNDNNNNYSN-------SSLNSYFSDVKAS 51
           MAL L FKPK  ++LTNPSLIHLFS++ +  +D N+  ++       SS++SY SDV+A 
Sbjct: 1   MALQLTFKPKTPKTLTNPSLIHLFSSNSSAPSDPNDETADTSTASPRSSISSYLSDVRAR 60

Query: 52  LRKQ-----TP----PNQTTSSSSSSSRGPPSKVASLEEIRRNLAEFRQRSTVPPPIESN 102
           L++      +P    P  + +S  + S  P SK ASLEEIR+NL+EFR RS+VPPP +  
Sbjct: 61  LKQDQQFSSSPSARRPADSFTSPFNRSTSPASKAASLEEIRKNLSEFRNRSSVPPPSDLG 120

Query: 103 STESQSQSQTQSQSQSQHISFQELYKRNTV------NETLASKPSGK---PSFEAIRESL 153
           ST S S S  +       ISFQ+LYK N++      N+  A+   G      F++I+ESL
Sbjct: 121 STPSSSSSWQRG------ISFQDLYKNNSMRKGEDSNDAPANSTGGGRIGMPFDSIKESL 174

Query: 154 RQMRARSNNDNNNNNRG--NGVKNSDPLSLKNFTNTLRMKPADDNAHRVIGGSQELPALV 211
           R++         ++ RG  + +K+ D LSL  F ++L++KP+D     V+GG++ LP  V
Sbjct: 175 RKV---------SSARGMQSELKSGDSLSLSAFKDSLKLKPSDP----VMGGTERLPVSV 221

Query: 212 FGKEKKEEE-KAVELERMKTDFVKMYSFEELGDKLKKLRPEGLEG--GFSLRELNERLMR 268
           FGKE KE++ K V L   KT+FVKMYS++ELG+KL+ LRP+  +G   FSL ELN+RL++
Sbjct: 222 FGKEMKEKDGKNVGL---KTEFVKMYSYDELGNKLRNLRPDKEKGKNWFSLTELNDRLVK 278

Query: 269 LRVMEMNESNSKIGAGTISALRSSLARIQIEKEEKAR----VQRINILEGFGGTPEYLLH 324
           LR ME  E+ S+IG  +   LR+SL +++I  +E+ +    +QR++I+     TP Y+L 
Sbjct: 279 LRTMEEKETESRIGGISFQDLRASLMQMKISDDEREKKRHVIQRLDIMGQLVRTPNYMLE 338

Query: 325 PPKEHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSA 384
           PP EHLVEKYFHPDNMSSAEKMKIELAKVRE+FKMSESDCGSARVQ+AQLTTKI HL++ 
Sbjct: 339 PPNEHLVEKYFHPDNMSSAEKMKIELAKVREKFKMSESDCGSARVQVAQLTTKINHLTAV 398

Query: 385 LHKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSKLGLRDNPDYKS 435
           LHKKDKHS+KGL  MVQ+RK+LLKYLRRTDWDSYC +L+ LGLRDNPDYK+
Sbjct: 399 LHKKDKHSKKGLLGMVQQRKKLLKYLRRTDWDSYCMILNTLGLRDNPDYKA 449

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072669|ref|XP_002303830.1| predicted protein [Populus trichocarpa] gi|222841262|gb|EEE78809.1| predicted protein [Populus trichocarpa]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 251/485 (51%), Positives = 317/485 (65%), Gaps = 65/485 (13%)

Query: 1   MALHLFKPKHRSLTNPSLIHLFSTSQNDNNDNNN-----------------NYSNSSLNS 43
           MAL L +P+HRSL+NP LIHLFS+S    +D+ +                     SSL+S
Sbjct: 1   MALSLSRPRHRSLSNPYLIHLFSSSSTTPSDDPSVSEPQQQQQQQQQQQQQQQQKSSLSS 60

Query: 44  YFSDVKASLRKQTPPNQTTS--------SSSSSSRGPPSKVASLEEIRRNLAEFRQRSTV 95
           YF+DVKASL++Q P N+  S        S++ S   P S +AS +EIR+NL+EFR RS+ 
Sbjct: 61  YFNDVKASLKQQNPENRPNSPPLSKPSYSTNQSFSKPTSNIASFDEIRKNLSEFRLRSSD 120

Query: 96  PPPIESNSTESQSQSQTQSQSQSQHISFQELYKRNTVNETL------------ASKP-SG 142
           PPP E NS  SQ  S  Q       ISFQELYKRN +  +             A++P SG
Sbjct: 121 PPPREPNSAPSQEPSSKQ------QISFQELYKRNVLARSTGGSGTTQSGGINANQPISG 174

Query: 143 KPSFEAIRESLRQMRARSNNDNNNNNRGNGVKNSDPLSLKNFTNTLRMKPADDN----AH 198
           + +F+AIRESLRQM+     DNNN   G G      LS  +F    ++KP ++N      
Sbjct: 175 RLTFDAIRESLRQMKG--GGDNNNTAAGRG--RVGELSFSSF----KLKPGNENEPMNKS 226

Query: 199 RVIGGSQELPALVFGKEKKEEEKAVELERMKTDFVKMYSFEELGDKLKKLRPE---GLEG 255
            +IGG++ LP+ VFG+E + E  A     M T+FVKMYS  ELGDKL+ LRP+   G +G
Sbjct: 227 TIIGGTEGLPSAVFGREMEGEGGAKG--EMSTEFVKMYSHGELGDKLRILRPKVKRGEKG 284

Query: 256 GFSLRELNERLMRLRVMEMNESNSKIGAGTISALRSSLARIQIEKEEKA---RVQRINIL 312
            F+L+ELNERL +LR ME  E+ S+I   +   LR SL +++   +EKA    VQR+N++
Sbjct: 285 WFTLKELNERLRKLREMEEKETESRISGVSFRDLRESLVKLKASSDEKAIKNSVQRLNLM 344

Query: 313 EGFGGTPEYLLHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQIA 372
                +    L PPK+HLVEKYFHPDNMSS+EKMKIELA+VR+EFKMSESDCGSARVQ+A
Sbjct: 345 GQLRAS-NVTLQPPKKHLVEKYFHPDNMSSSEKMKIELARVRDEFKMSESDCGSARVQVA 403

Query: 373 QLTTKIKHLSSALHKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSKLGLRDNPD 432
            LTTKIKHLSS L+KKDKHSRKGL  MVQ+RK+LLKYLRRTDWDSYC VLSKLGLRDNPD
Sbjct: 404 LLTTKIKHLSSVLNKKDKHSRKGLIGMVQKRKKLLKYLRRTDWDSYCLVLSKLGLRDNPD 463

Query: 433 YKSLA 437
           +K+L 
Sbjct: 464 HKTLT 468

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489144|ref|XP_002264817.2| PREDICTED: uncharacterized protein LOC100267570 [Vitis vinifera]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 252/452 (55%), Positives = 313/452 (69%), Gaps = 44/452 (9%)

Query: 8   PKHRSLTNPSLIH-LFSTSQNDNNDNNNNYSNSSLNS------------YFSDVKASLRK 54
           P++RS  NPS IH +FS+S   N+ +NN  S  S +S            YF+DVKASL++
Sbjct: 10  PRNRS-RNPSFIHRVFSSSSTSNDADNNTPSPPSSSSSSSSSSSSSLSSYFNDVKASLKQ 68

Query: 55  Q-TPPNQTTSSSSSSSRGPPS----KVASLEEIRRNLAEFRQRSTVPPPIESNSTESQSQ 109
              PP +++S  SSSS         K+ASLEEIR+NL+EFR RS+VP           + 
Sbjct: 69  PPQPPRKSSSLFSSSSPSSSPPLSSKIASLEEIRKNLSEFRSRSSVP-----------NP 117

Query: 110 SQTQSQSQSQHISFQELYKRNTVNETLASKPSGKPSFEAIRESLRQMRARSNNDNNNNNR 169
           S +Q  S S  ISFQELYKRN + +   S P GK SF+AIRESL+Q+R  S+ +      
Sbjct: 118 SPSQQSSSSSPISFQELYKRNVIPKPEDS-PKGKLSFDAIRESLKQLRPSSSAEG----- 171

Query: 170 GNGVKNSDPLSLKNFTNTLRMKPADDNAHR---VIGGSQE-LPALVFGKEKKEEEKAVEL 225
           G     +D LSL  F ++LR++P D  A +   VIGGS + LP  VFGK+ ++ ++A E 
Sbjct: 172 GQTKGKTDVLSLSAFQDSLRLRPVDSGATKSSVVIGGSDDALPMSVFGKDIRDRKEA-ES 230

Query: 226 ERMKTDFVKMYSFEELGDKLKKLRPE-GLEGGFSLRELNERLMRLRVMEMNESNSKIGAG 284
             MKT FVK Y  EELG KL++LRPE G E  FSL+ELNERLM+LR ME  E+ S I   
Sbjct: 231 TAMKTSFVKWYGPEELGKKLRELRPETGAESCFSLKELNERLMKLREMEEKETESSIPGV 290

Query: 285 TISALRSSLARIQIEKEEKAR--VQRINILEGFGGTPEYLLHPPKEHLVEKYFHPDNMSS 342
           +   LR SL R+++  +EK +     ++IL   GGTP ++L PPKEHLVE+YFHPDNMSS
Sbjct: 291 SFKDLRESLVRLRMADDEKTKKSSSELDILGRLGGTPSFMLAPPKEHLVEQYFHPDNMSS 350

Query: 343 AEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSALHKKDKHSRKGLQAMVQR 402
           AEK+K+EL KVR+EFKMSESDCGSARVQ+AQLTTKIKHL+SALHKKDKHSRKGLQAMVQR
Sbjct: 351 AEKLKVELKKVRDEFKMSESDCGSARVQVAQLTTKIKHLNSALHKKDKHSRKGLQAMVQR 410

Query: 403 RKRLLKYLRRTDWDSYCFVLSKLGLRDNPDYK 434
           RK+LLKYLRRTDWDSYC VLSKLGLRDNP+YK
Sbjct: 411 RKKLLKYLRRTDWDSYCLVLSKLGLRDNPNYK 442

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30699526|ref|NP_849914.1| S15/NS1, RNA-binding protein [Arabidopsis thaliana] gi|6730725|gb|AAF27115.1|AC018849_3 unknown protein; 13226-11448 [Arabidopsis thaliana] gi|332198307|gb|AEE36428.1| S15/NS1, RNA-binding protein [Arabidopsis thaliana]

 Score =  347 bits (891), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 216/450 (48%), Positives = 274/450 (60%), Gaps = 53/450 (11%)

Query: 1   MALHLFKPKHRSLTNPSLIHLFSTSQ-------NDNNDNNNNYSNSS----LNSYFSDVK 49
           MALHL +PK R  +NPSLIHLFSTS         D N++N   S SS    ++SYFS ++
Sbjct: 1   MALHLARPKQRLHSNPSLIHLFSTSSSSSSSSPQDGNESNEQPSQSSSDYKISSYFSGIR 60

Query: 50  ASLRKQTPPNQTTSSSSSSSRGPPSKVASLEEIRRNLAEFRQRSTVPPPIESNSTESQSQ 109
           +SL KQT               P + ++  ++IRRNL EFR R+T PPP +         
Sbjct: 61  SSL-KQTQSQDGKRQFVRFDAKPQNSLSGNQDIRRNLNEFRSRATAPPPRD--------- 110

Query: 110 SQTQSQSQSQHISFQELYKRNTVNETLASKPSGKPSFEAIRESLRQMRARSNNDNNNNNR 169
                         Q+L+K+N ++++  ++         I+ +LRQMR +          
Sbjct: 111 -------------MQDLFKQNVLSKSGGTRRIEGVPLTNIKANLRQMRPQ---------- 147

Query: 170 GNGVKNSDPLSLKNFTNTLRMKPADDNAHRVIGGSQE-LPALVFGKEKKEEEKAVELERM 228
                 S   +L    N ++    D+    VIGG+ E LP  V GKE +EE+   E   M
Sbjct: 148 -QATTESKWANLSGIQNIMKTNINDNIRSNVIGGAAEGLPHSVVGKELEEEDVTEE--EM 204

Query: 229 KTDFVKMYSFEELGDKLKKLRPEGL--EGGFSLRELNERLMRLRVMEMNE--SNSKIGAG 284
           K++F+K Y   ELG+KL+  RPEG   EG FSL+ELN+RL++LR ME  +    S +   
Sbjct: 205 KSEFIKSYDPIELGEKLRLYRPEGKKEEGWFSLQELNQRLVKLRAMEEEQFQKTSIVHPS 264

Query: 285 TISALRSSLARIQIEKEEKARVQRINILEGFGGTPEYLLHPPKEHLVEKYFHPDNMSSAE 344
            ++ LRS   +   + ++    Q  NI     GTP+Y+L PPK+ LVE YFHPDNMSSAE
Sbjct: 265 FVNNLRSEFHKF-TKAQKSDPFQNTNIWGVLSGTPKYMLEPPKDQLVETYFHPDNMSSAE 323

Query: 345 KMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSALHKKDKHSRKGLQAMVQRRK 404
           KMKIELAKVREEFKMSESDCGSARVQ+AQLTTKIKHLSS LHKKDKHSRKGL AMVQRRK
Sbjct: 324 KMKIELAKVREEFKMSESDCGSARVQVAQLTTKIKHLSSVLHKKDKHSRKGLIAMVQRRK 383

Query: 405 RLLKYLRRTDWDSYCFVLSKLGLRDNPDYK 434
           +LLKY+RRTDWDSYC  LSKLGLRDNPDYK
Sbjct: 384 KLLKYMRRTDWDSYCLSLSKLGLRDNPDYK 413

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842803|ref|XP_002889283.1| ribosomal protein S15 family protein [Arabidopsis lyrata subsp. lyrata] gi|297335124|gb|EFH65542.1| ribosomal protein S15 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 215/458 (46%), Positives = 273/458 (59%), Gaps = 70/458 (15%)

Query: 1   MALHLFKPKHRSLTNPSLIHLFSTSQNDNNDNNNNYS--------------NSSLNSYFS 46
           MALHL +PK R  +NPSLIHLFSTS +   D N +                +  ++SYFS
Sbjct: 1   MALHLARPKQRLHSNPSLIHLFSTSSSSPQDGNESSEQPSQSPSSSSSSPPDFKISSYFS 60

Query: 47  DVKASLRKQTPPNQTTSSSSSSSRGPPSKVASL---EEIRRNLAEFRQRSTVPPPIESNS 103
            +++SL KQT P              P+   SL   ++IRRNL EFR R+  PPP +   
Sbjct: 61  GIRSSL-KQTQPQDGRRQFVRFDAKAPNPATSLSGNQDIRRNLNEFRSRAVAPPPRD--- 116

Query: 104 TESQSQSQTQSQSQSQHISFQELYKRNTVNETLASKPSGKPSFEAIRESLRQMRARSNND 163
                              +Q++YK+N + ++  S  + K     I+E+LRQMR ++  +
Sbjct: 117 -------------------WQDIYKQNVLPKSGDSYGTRKIDGTNIKENLRQMRPQATTE 157

Query: 164 NNNNNRGNGVKNSDPLSLKNFTNTLRMKPADDNAHRVIGGSQELPALVFGKEKKEEEK-A 222
           +      +G++N+   +LK F   LR          VIGG   LP  VF KE ++ +K  
Sbjct: 158 SKWATL-SGLQNTMKTNLK-FNENLR--------SNVIGGGGGLPYSVFEKELEQGQKNE 207

Query: 223 VELERMKTDFVKMYSFEELGDKLKKLRPEGLE--GGFSLRELNERLMRLRVMEMN--ESN 278
            E E MK++F+K Y   ELG+KL+  RP G +  G FSL ELN+RL++LR ME    E  
Sbjct: 208 NETEEMKSEFIKSYDPIELGEKLRLYRPVGKKELGWFSLNELNQRLVKLRAMEEEQFERT 267

Query: 279 SKIGAGTISALRSSLARIQIEKEEKARVQRINILEGFGGTP--EYLLHPPKEHLVEKYFH 336
             +    +  LRS+      E E+  + Q+          P  +Y+L PPK+ LVE YFH
Sbjct: 268 RTLHPSFVKELRSA-----YENEKAVKAQK--------SVPCSKYMLEPPKDQLVETYFH 314

Query: 337 PDNMSSAEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSALHKKDKHSRKGL 396
           PDNMSSAEKMKIELAKVREEFKMSESDCGSARVQ+AQLTTKIKHLSS LHKKDKHSRKGL
Sbjct: 315 PDNMSSAEKMKIELAKVREEFKMSESDCGSARVQVAQLTTKIKHLSSVLHKKDKHSRKGL 374

Query: 397 QAMVQRRKRLLKYLRRTDWDSYCFVLSKLGLRDNPDYK 434
            AMVQRRK+LLKY+RRTDWDSYC  LSKLGLRDNPDYK
Sbjct: 375 IAMVQRRKKLLKYMRRTDWDSYCLSLSKLGLRDNPDYK 412

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394286|ref|NP_563982.1| S15/NS1, RNA-binding protein [Arabidopsis thaliana] gi|8927660|gb|AAF82151.1|AC034256_15 Contains similarity to an unknown protein T21F11.5 gi|6730725 from Arabidopsis thaliana BAC T21F11 gb|AC018849 and contains a Ribosomal Protein S15 PF|00312 domain [Arabidopsis thaliana] gi|13605577|gb|AAK32782.1|AF361614_1 At1g15810/F7H2_23 [Arabidopsis thaliana] gi|22137170|gb|AAM91430.1| At1g15810/F7H2_23 [Arabidopsis thaliana] gi|332191247|gb|AEE29368.1| S15/NS1, RNA-binding protein [Arabidopsis thaliana]

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 203/461 (44%), Positives = 269/461 (58%), Gaps = 68/461 (14%)

Query: 1   MALHLFKPKHRSLTNPSLIHLFSTSQNDNNDNNNNYSNSSLN--------------SYFS 46
           MALHL +   R  +N SLI  FS   N ++D+   ++N+ +               S   
Sbjct: 1   MALHLARRHQRLPSNTSLIRFFS---NSSSDSPPQFTNAPVEKPSQSPSSPSPSDSSPIF 57

Query: 47  DVKASLRKQTPPNQTT-------SSSSSSSRGPPSKVASLEEIRRNLAEFRQRSTVPPPI 99
           D+K +L+ +    Q         S + S +RG  S   +L    +NLA+F++RSTVPPP 
Sbjct: 58  DIKNTLKLKLQNQQEQGRKPFDRSDAQSQNRGSTSFSQNLG---KNLAKFQRRSTVPPPR 114

Query: 100 ESNSTESQSQSQTQSQSQSQHISFQELYKRNTVNETLASKPSGKPSFEA--IRESLRQMR 157
           +S   +  S           +IS   LYK++    +   + S    F +  + E+L+ +R
Sbjct: 115 DSGGVQPPS-----------YISLAGLYKQSAATNSSDPRNSKAQGFNSNTVSETLKNLR 163

Query: 158 ARSNNDNNNNNRGNGVKNSDPLSLKNFTNTLRMKPADDNAHRVIGGSQELPALVFGKEKK 217
            + N  NN   RG GV       L +F +T+                + LP  +F  +  
Sbjct: 164 TQINTSNNMGKRG-GV-------LGSFKSTV---------------GEALPKYLFETQMD 200

Query: 218 EEEKA-VELERMKTDFVKMYSFEELGDKLKKLRPEG--LEGGFSLRELNERLMRLRVMEM 274
           E + +  E E   T+F+  Y+ EELG+KL+ LRPEG   EG FSL ELN+RL++LR +E 
Sbjct: 201 ESKGSEGETEEAMTEFLMFYNEEELGEKLRTLRPEGEKKEGWFSLEELNQRLVKLRQVEE 260

Query: 275 NESNSKIGAGTISALRSSLARIQIEKEEKARVQRINILEGFGGTPEYLLHPPKEHLVEKY 334
            E+  +      + LR+ ++  + E  E +  Q + I+   GG PEY L PPKE LV+ Y
Sbjct: 261 KEAQYR--TKNFAQLRNVISSFKNENSEASSQQNVAIMGHLGGIPEYKLLPPKEDLVDTY 318

Query: 335 FHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSALHKKDKHSRK 394
           FHPDNMSSAEKMKIEL+KVREEFKMSESDCGSARVQ+AQLTTKIKHLSS+LHKKDKHSRK
Sbjct: 319 FHPDNMSSAEKMKIELSKVREEFKMSESDCGSARVQVAQLTTKIKHLSSSLHKKDKHSRK 378

Query: 395 GLQAMVQRRKRLLKYLRRTDWDSYCFVLSKLGLRDNPDYKS 435
           GL  MVQ+RK+LLKYLRRTDWDSYC VLSKL LRDNPDYK 
Sbjct: 379 GLLGMVQKRKKLLKYLRRTDWDSYCLVLSKLSLRDNPDYKC 419

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844488|ref|XP_002890125.1| ribosomal protein S15 family protein [Arabidopsis lyrata subsp. lyrata] gi|297335967|gb|EFH66384.1| ribosomal protein S15 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  301 bits (771), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 209/469 (44%), Positives = 272/469 (57%), Gaps = 71/469 (15%)

Query: 1   MALHLFKPKHRSLTNPSLIHLFSTSQ--------NDNNDNNNNYSNSSLNSYFS------ 46
           MALHL +   R  +NPSLI  FS S         N   +N +   +S   S  S      
Sbjct: 1   MALHLARRHQRLPSNPSLIRFFSNSSSESSPKVLNTPVENPSQSPSSPPPSDSSYSSPSF 60

Query: 47  DVKASLRKQTPPNQ-------TTSSSSSSSRGPPS------KVASLEEIRRNLAEFRQRS 93
           D+  +L+++    Q       T S + S SRG  S      +V+S  ++  NLA+F++RS
Sbjct: 61  DINTTLKQKLQNQQEQGRKQFTRSDTQSQSRGSTSFAQNQSRVSS-HDLGNNLAKFQRRS 119

Query: 94  TVPPPIESNSTESQSQSQTQSQSQSQHISFQELYKRNTVNETLASKPSGKPSFEA--IRE 151
           TVPPP +S   +S  Q           IS + LYK++T   +   +      F +  + E
Sbjct: 120 TVPPPRDSGGVQSPPQ-----------ISLEGLYKQSTATNSSDPRNWKAHGFNSSTVSE 168

Query: 152 SLRQMRARSNNDNNNNNRGNGVKNSDPLSLKNFTNTLRMKPADDNAHRVIGGSQELPALV 211
           +L+ +R ++N  +N   +G          L +F +T                 + LP  +
Sbjct: 169 TLKNLRTQTNTSSNMGKKGG--------FLGSFKSTT--------------AGEALPISL 206

Query: 212 FGKEKKEEEKAV---ELERMKTDFVKMYSFEELGDKLKKLRPEGL--EGGFSLRELNERL 266
           F  E K +E+ V   E E M T+F+  Y+ EELG+KL+ LRPEG   EG FSL+ELN+RL
Sbjct: 207 F--ETKMDEREVREGETEEMMTEFLTFYNEEELGEKLRMLRPEGEKEEGWFSLQELNQRL 264

Query: 267 MRLRVMEMNESNSKI-GAGTISALRSSLARIQIEKEEKARVQRINILEGFGGTPEYLLHP 325
           ++LR +E  E+  +     T+  + SS+     +K E    Q   I+   GG PEY L P
Sbjct: 265 VKLRQVEEKEAQYRTKNFATLRNVISSIKNDNDKKNEAFSQQNSAIMGHLGGIPEYKLLP 324

Query: 326 PKEHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL 385
           PKE LV+ YFHPDNMSSAEKMKIEL KVREEFKMSESDCGSARVQ+AQLTTKIKHLSS+L
Sbjct: 325 PKEDLVDTYFHPDNMSSAEKMKIELTKVREEFKMSESDCGSARVQVAQLTTKIKHLSSSL 384

Query: 386 HKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSKLGLRDNPDYK 434
           HKKDKHSRKGL  MVQ+RK+LLKYLRRTDWDSYC VLSKL LRDNP+YK
Sbjct: 385 HKKDKHSRKGLLGMVQKRKKLLKYLRRTDWDSYCLVLSKLSLRDNPEYK 433

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522302|ref|XP_003529786.1| PREDICTED: uncharacterized protein LOC100820600 [Glycine max]

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 185/407 (45%), Positives = 233/407 (57%), Gaps = 89/407 (21%)

Query: 45  FSDVKASLRKQTPPNQTTSSSSSSSRGPPSKVASLEEIRRNLAEFRQRSTVPPPIESNST 104
           FS++K + ++ +P    T  SS+            +EI +NL EFR R+T PPP      
Sbjct: 46  FSEIKNNFKESSPSPSNTPRSSNFR----------DEINKNLHEFRARTTAPPP------ 89

Query: 105 ESQSQSQTQSQSQSQHISFQELYKRNTVNETLASKPSGKPS--FEAIRESLRQMRARSNN 162
                       Q Q ISFQ++Y+ N     +   P    S  F +IR+SL+        
Sbjct: 90  ------------QQQQISFQKIYQEN-----MNRNPPNSSSFNFNSIRDSLKN------- 125

Query: 163 DNNNNNRGNGVKNSDPLSLKNFTNTLRMKPADDNAHRVIGGSQELPALV----FGKEKKE 218
                                      +KPA   A      S+ +P+       GKE   
Sbjct: 126 ---------------------------IKPA---AQTTQTWSRPMPSTTSGSFLGKEVSS 155

Query: 219 EEKAVELERMKTDFVKMYSFEELGDKLKKLRPEGLEG-GFSLRELNERLMRLRVMEMNE- 276
           +            F++ YS ++LG+KL+ LRPEG+    FS+REL+ERL RLR ME  E 
Sbjct: 156 DGSPAS-SSSSLSFLRTYSVDDLGEKLRMLRPEGMRNDWFSVRELSERLRRLRKMEEEEV 214

Query: 277 -----SNSKIG--AGTISALRSSLARI---QIEKEEKARVQRINILEGFGGTPEYLLHPP 326
                SN++ G     +  +R SLA++   Q E  +KA  Q ++IL    GTP + L PP
Sbjct: 215 EKQAHSNTQYGFNKAVLDHVRGSLAQLDQNQTEAAKKASRQGLSILSHLNGTPTFSLDPP 274

Query: 327 KEHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSALH 386
           K HLVEKYFHPDNMSS+EK+KIELAKVR+EFKMS+SDCGSARVQIAQLTTKIKHLS+ LH
Sbjct: 275 KPHLVEKYFHPDNMSSSEKLKIELAKVRDEFKMSDSDCGSARVQIAQLTTKIKHLSAVLH 334

Query: 387 KKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSKLGLRDNPDY 433
           KKD HSRKGL AMVQRRKRLLKYLRRTDWDSYCFV+SKLGLRDNPD+
Sbjct: 335 KKDVHSRKGLLAMVQRRKRLLKYLRRTDWDSYCFVISKLGLRDNPDH 381

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	437
TAIR|locus:2198918	414	AT1G80620 [Arabidopsis thalian	0.675	0.712	0.468	4.7e-70
TAIR|locus:2036229	419	AT1G15810 [Arabidopsis thalian	0.478	0.498	0.568	3e-64
TIGR_CMR|CHY_1760	89	CHY_1760 "ribosomal protein S1	0.196	0.966	0.373	1.2e-08
UNIPROTKB|P0ADZ4	89	rpsO [Escherichia coli K-12 (t	0.178	0.876	0.412	1.6e-08
TIGR_CMR|CBU_0851	89	CBU_0851 "ribosomal protein S1	0.183	0.898	0.378	3.4e-08
TIGR_CMR|CPS_2206	89	CPS_2206 "ribosomal protein S1	0.183	0.898	0.402	5.6e-08
TIGR_CMR|BA_3945	89	BA_3945 "ribosomal protein S15	0.167	0.820	0.426	1.2e-07
UNIPROTKB|Q9KU77	89	rpsO "30S ribosomal protein S1	0.178	0.876	0.387	4.3e-07
TIGR_CMR|SO_1207	89	SO_1207 "ribosomal protein S15	0.178	0.876	0.387	4.3e-07
TIGR_CMR|VC_0646	89	VC_0646 "ribosomal protein S15	0.178	0.876	0.387	4.3e-07

TAIR|locus:2198918 AT1G80620 [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 4.7e-70, Sum P(2) = 4.7e-70
 Identities = 149/318 (46%), Positives = 180/318 (56%)

Query:   124 QELYKRNTVNETLASKP-SGKPSFEAIRESLRQMRAXXXXXXXXXXXXXXXXXXXPLSLK 182
             Q+L+K+N ++++  ++   G P    I+ +LRQMR                      +L 
Sbjct:   112 QDLFKQNVLSKSGGTRRIEGVP-LTNIKANLRQMRPQQATTESKWA-----------NLS 159

Query:   183 NFTNTLRMKPADDNAHRVIGGSQE-LPALVFGXXXXXXXXAVELERMKTDFVKMYSFEEL 241
                N ++    D+    VIGG+ E LP  V G         V  E MK++F+K Y   EL
Sbjct:   160 GIQNIMKTNINDNIRSNVIGGAAEGLPHSVVGKELEEED--VTEEEMKSEFIKSYDPIEL 217

Query:   242 GDKLKKLRPEGL--EGGFSXXXXXXXXXXXXXXXXXX--SNSKIGAGTISALRSSLARIQ 297
             G+KL+  RPEG   EG FS                      S +    ++ LRS   +  
Sbjct:   218 GEKLRLYRPEGKKEEGWFSLQELNQRLVKLRAMEEEQFQKTSIVHPSFVNNLRSEFHKFT 277

Query:   298 IEKEEKAR-VQRINILEGFGGTPEYLLHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREE 356
               K +K+   Q  NI     GTP+Y+L PPK+ LVE YFHPDNMSSAEKMKIELAKVREE
Sbjct:   278 --KAQKSDPFQNTNIWGVLSGTPKYMLEPPKDQLVETYFHPDNMSSAEKMKIELAKVREE 335

Query:   357 FKMSESDCGSARVQIAQLTTKIKHLSSALHKKDKHSRKGLQAMVQXXXXXXXXXXXTDWD 416
             FKMSESDCGSARVQ+AQLTTKIKHLSS LHKKDKHSRKGL AMVQ           TDWD
Sbjct:   336 FKMSESDCGSARVQVAQLTTKIKHLSSVLHKKDKHSRKGLIAMVQRRKKLLKYMRRTDWD 395

Query:   417 SYCFVLSKLGLRDNPDYK 434
             SYC  LSKLGLRDNPDYK
Sbjct:   396 SYCLSLSKLGLRDNPDYK 413

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015935 "small ribosomal subunit" evidence=ISS

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0051301 "cell division" evidence=RCA

TAIR|locus:2036229 AT1G15810 [Arabidopsis thaliana (taxid:3702)]

 Score = 573 (206.8 bits), Expect = 3.0e-64, Sum P(3) = 3.0e-64
 Identities = 121/213 (56%), Positives = 140/213 (65%)

Query:   224 ELERMKTDFVKMYSFEELGDKLKKLRPEG--LEGGFSXXXXXXXXXXXXXXXXXXSNSKI 281
             E E   T+F+  Y+ EELG+KL+ LRPEG   EG FS                  +  + 
Sbjct:   208 ETEEAMTEFLMFYNEEELGEKLRTLRPEGEKKEGWFSLEELNQRLVKLRQVEEKEAQYR- 266

Query:   282 GAGTISALRSSLARIQIEKEEKARVQRINILEGFGGTPEYLLHPPKEHLVEKYFHPDNMS 341
                  + LR+ ++  + E  E +  Q + I+   GG PEY L PPKE LV+ YFHPDNMS
Sbjct:   267 -TKNFAQLRNVISSFKNENSEASSQQNVAIMGHLGGIPEYKLLPPKEDLVDTYFHPDNMS 325

Query:   342 SAEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSALHKKDKHSRKGLQAMVQ 401
             SAEKMKIEL+KVREEFKMSESDCGSARVQ+AQLTTKIKHLSS+LHKKDKHSRKGL  MVQ
Sbjct:   326 SAEKMKIELSKVREEFKMSESDCGSARVQVAQLTTKIKHLSSSLHKKDKHSRKGLLGMVQ 385

Query:   402 XXXXXXXXXXXTDWDSYCFVLSKLGLRDNPDYK 434
                        TDWDSYC VLSKL LRDNPDYK
Sbjct:   386 KRKKLLKYLRRTDWDSYCLVLSKLSLRDNPDYK 418

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015935 "small ribosomal subunit" evidence=ISS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TIGR_CMR|CHY_1760 CHY_1760 "ribosomal protein S15" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 136 (52.9 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 34/91 (37%), Positives = 50/91 (54%)

Query:   340 MSSAEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQ 397
             M+  ++ K+E+     ++++ E D GS  VQIA LT +I  L+  L  HKKD HSR+GL 
Sbjct:     1 MALTQEQKMEIIS---KYQLHEKDTGSPEVQIAILTERINQLTEHLKVHKKDFHSRRGLL 57

Query:   398 AMVQXXXXXXXXXXXTDWDSYCFVLSKLGLR 428
              MV             D++ Y  ++ KLGLR
Sbjct:    58 KMVGQRRSLLNYLKRKDFERYRAIVEKLGLR 88

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P0ADZ4 rpsO [Escherichia coli K-12 (taxid:83333)]

 Score = 135 (52.6 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 33/80 (41%), Positives = 41/80 (51%)

Query:   351 AKVREEFKMSESDCGSARVQIAQLTTKIKHLSS--ALHKKDKHSRKGLQAMVQXXXXXXX 408
             AK+  EF    +D GS  VQ+A LT +I HL    A HKKD HSR+GL  MV        
Sbjct:     9 AKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLD 68

Query:   409 XXXXTDWDSYCFVLSKLGLR 428
                  D   Y  ++ +LGLR
Sbjct:    69 YLKRKDVARYTQLIERLGLR 88

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0006378 "mRNA polyadenylation" evidence=IDA

GO:0019843 "rRNA binding" evidence=IEA;IDA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

TIGR_CMR|CBU_0851 CBU_0851 "ribosomal protein S15" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 132 (51.5 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 31/82 (37%), Positives = 44/82 (53%)

Query:   349 ELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQXXXXX 406
             E AK+ +E+++ + D GS  VQ+A LT KI  L+  +  HK D HSR+GL  MV      
Sbjct:     7 ETAKIVKEYQLGKDDTGSPEVQVAILTAKIIKLTDHMKAHKHDHHSRRGLLRMVSQRRKL 66

Query:   407 XXXXXXTDWDSYCFVLSKLGLR 428
                    D   Y  ++ +LGLR
Sbjct:    67 LNFLKRNDLQRYLKLIERLGLR 88

GO:0003735 "structural constituent of ribosome" evidence=ISS

TIGR_CMR|CPS_2206 CPS_2206 "ribosomal protein S15" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 130 (50.8 bits), Expect = 5.6e-08, P = 5.6e-08
 Identities = 33/82 (40%), Positives = 41/82 (50%)

Query:   349 ELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQXXXXX 406
             E A +  E+  SE D GS  VQ+A LTT+I HL      H  D HSR+GL  MV      
Sbjct:     7 EKAAIVAEYAQSEGDTGSPEVQVALLTTQINHLQGHFKAHIHDHHSRRGLLRMVAQRRKL 66

Query:   407 XXXXXXTDWDSYCFVLSKLGLR 428
                    + D Y  ++ KLGLR
Sbjct:    67 LDYLKGKNVDRYGALIGKLGLR 88

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015935 "small ribosomal subunit" evidence=ISS

TIGR_CMR|BA_3945 BA_3945 "ribosomal protein S15" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 127 (49.8 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 32/75 (42%), Positives = 42/75 (56%)

Query:   356 EFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQXXXXXXXXXXXT 413
             +F+  E+D GS  VQIA LT +I  L+  L  HKKD HSR+GL  MV            +
Sbjct:    14 QFRTHETDTGSPEVQIAVLTEQINTLNEHLRTHKKDHHSRRGLLKMVGKRRNLLTYLRNS 73

Query:   414 DWDSYCFVLSKLGLR 428
             D   Y  +++KLGLR
Sbjct:    74 DITRYRELITKLGLR 88

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|Q9KU77 rpsO "30S ribosomal protein S15" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 122 (48.0 bits), Expect = 4.3e-07, P = 4.3e-07
 Identities = 31/80 (38%), Positives = 38/80 (47%)

Query:   351 AKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQXXXXXXX 408
             A +  E+   E+D GS  VQIA LT  I HL      HK D HSR+GL  MV        
Sbjct:     9 AAIVAEYARCENDTGSPEVQIALLTASINHLQGHFQAHKGDHHSRRGLLRMVSSRRKLLD 68

Query:   409 XXXXTDWDSYCFVLSKLGLR 428
                  D   Y  ++ +LGLR
Sbjct:    69 YLKGKDLSRYQDLIKRLGLR 88

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|SO_1207 SO_1207 "ribosomal protein S15" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 122 (48.0 bits), Expect = 4.3e-07, P = 4.3e-07
 Identities = 31/80 (38%), Positives = 39/80 (48%)

Query:   351 AKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQXXXXXXX 408
             AK+  EF    +D GS  VQ+A LT +I HL      H  D HSR+GL  MV        
Sbjct:     9 AKILAEFGRGANDTGSTEVQVALLTAQINHLQDHFKEHIHDHHSRRGLLRMVSARRKLLA 68

Query:   409 XXXXTDWDSYCFVLSKLGLR 428
                 T+   Y  ++ KLGLR
Sbjct:    69 YLKRTEAVRYNELIQKLGLR 88

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_0646 VC_0646 "ribosomal protein S15" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 122 (48.0 bits), Expect = 4.3e-07, P = 4.3e-07
 Identities = 31/80 (38%), Positives = 38/80 (47%)

Query:   351 AKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQXXXXXXX 408
             A +  E+   E+D GS  VQIA LT  I HL      HK D HSR+GL  MV        
Sbjct:     9 AAIVAEYARCENDTGSPEVQIALLTASINHLQGHFQAHKGDHHSRRGLLRMVSSRRKLLD 68

Query:   409 XXXXTDWDSYCFVLSKLGLR 428
                  D   Y  ++ +LGLR
Sbjct:    69 YLKGKDLSRYQDLIKRLGLR 88

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_III1496 hypothetical protein (470 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	437
cd00353	80	cd00353, Ribosomal_S15p_S13e, Ribosomal protein S1	3e-26
PRK05626	89	PRK05626, rpsO, 30S ribosomal protein S15; Reviewe	6e-25
COG0184	89	COG0184, RpsO, Ribosomal protein S15P/S13E [Transl	2e-22
TIGR00952	86	TIGR00952, S15_bact, ribosomal protein S15, bacter	1e-21
pfam00312	83	pfam00312, Ribosomal_S15, Ribosomal protein S15	2e-15
cd00677	46	cd00677, S15_NS1_EPRS_RNA-bind, S15/NS1/EPRS_RNA-b	9e-12
CHL00027	90	CHL00027, rps15, ribosomal protein S15	1e-10
PTZ00119	302	PTZ00119, PTZ00119, 40S ribosomal protein S15; Pro	4e-04
PRK08561	151	PRK08561, rps15p, 30S ribosomal protein S15P; Revi	0.003

>gnl|CDD|238213 cd00353, Ribosomal_S15p_S13e, Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome

 Score =  101 bits (253), Expect = 3e-26
 Identities = 36/77 (46%), Positives = 55/77 (71%), Gaps = 2/77 (2%)

Query: 352 KVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKY 409
           ++ +EF ++E D GS  VQ+A LT +I +L+  L  +KKDKHS++GL  +V +R+RLLKY
Sbjct: 4   EILKEFGLAEGDTGSPEVQLALLTERIVNLTEHLEKNKKDKHSKRGLLLLVSKRRRLLKY 63

Query: 410 LRRTDWDSYCFVLSKLG 426
           L+R D   Y +++ KLG
Sbjct: 64  LKRKDRLRYEWLIEKLG 80

S15 also plays an important autoregulatory role by binding and preventing its own mRNA from being translated. S15 has a predominantly alpha-helical fold that is highly structured except for the N-terminal alpha helix. Length = 80

>gnl|CDD|180170 PRK05626, rpsO, 30S ribosomal protein S15; Reviewed

 Score = 97.5 bits (244), Expect = 6e-25
 Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 2/86 (2%)

Query: 346 MKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRR 403
            K + A++ +E+   E D GS  VQ+A LT +I HL+  L  HKKD HSR+GL  MV +R
Sbjct: 4   TKEKKAEIIKEYGRHEGDTGSPEVQVALLTERINHLTEHLKEHKKDHHSRRGLLKMVGQR 63

Query: 404 KRLLKYLRRTDWDSYCFVLSKLGLRD 429
           ++LL YL++ D + Y  ++ +LGLR 
Sbjct: 64  RKLLDYLKKKDVERYRALIERLGLRR 89

Length = 89

>gnl|CDD|223262 COG0184, RpsO, Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]

 Score = 90.7 bits (226), Expect = 2e-22
 Identities = 44/92 (47%), Positives = 61/92 (66%), Gaps = 5/92 (5%)

Query: 340 MSSAEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQ 397
           MS   ++K EL   R+E+ + E D GS  VQ+A LT +I +L+  L  HKKD HSR+GL 
Sbjct: 1   MSLTSEIKQEL---RDEYGIPEVDTGSGEVQLALLTERINNLTEHLKEHKKDHHSRRGLL 57

Query: 398 AMVQRRKRLLKYLRRTDWDSYCFVLSKLGLRD 429
            +V +R+RLLKYL+R D   Y +++ KLGLR 
Sbjct: 58  LLVSKRRRLLKYLKRKDVLRYRWLIKKLGLRR 89

Length = 89

>gnl|CDD|130027 TIGR00952, S15_bact, ribosomal protein S15, bacterial/organelle

 Score = 88.5 bits (220), Expect = 1e-21
 Identities = 41/86 (47%), Positives = 57/86 (66%), Gaps = 2/86 (2%)

Query: 346 MKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRR 403
            K    ++ +EF++ E D GS  VQIA LT +I  L+  L  +KKD HSR+GL  +V RR
Sbjct: 1   TKERKQEIIKEFQLHEKDTGSPEVQIALLTERINQLTEHLKANKKDHHSRRGLLKLVGRR 60

Query: 404 KRLLKYLRRTDWDSYCFVLSKLGLRD 429
           +RLLKYL+RTD + Y  ++ +LGLR 
Sbjct: 61  RRLLKYLKRTDVERYRSLIKRLGLRR 86

This model is built to recognize specifically bacterial, chloroplast, and mitochondrial ribosomal protein S15. The homologous proteins of Archaea and Eukarya are designated S13 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 86

>gnl|CDD|109373 pfam00312, Ribosomal_S15, Ribosomal protein S15

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 2/80 (2%)

Query: 351 AKVREEFKMSESDCGSARVQIAQLTTKIKHLSS--ALHKKDKHSRKGLQAMVQRRKRLLK 408
             +  EF  +E D GS  VQIA LT +I  L      HKKD HS++GL  MV +R+RLL 
Sbjct: 4   GLIISEFLKAEKDTGSVEVQIALLTERIVRLRKHLEEHKKDYHSKRGLIKMVSKRRRLLA 63

Query: 409 YLRRTDWDSYCFVLSKLGLR 428
           YL++ D   Y  ++ +LGLR
Sbjct: 64  YLKKKDTARYENLIEQLGLR 83

Length = 83

>gnl|CDD|238361 cd00677, S15_NS1_EPRS_RNA-bind, S15/NS1/EPRS_RNA-binding domain

 Score = 59.4 bits (145), Expect = 9e-12
 Identities = 25/46 (54%), Positives = 34/46 (73%), Gaps = 2/46 (4%)

Query: 368 RVQIAQLTTKIKHLSS--ALHKKDKHSRKGLQAMVQRRKRLLKYLR 411
            VQIA LT +I++L    A +KKDKHS++GL  +V +R RLLKYL+
Sbjct: 1   EVQIALLTERIRNLKEHLAKNKKDKHSKRGLDLLVSKRLRLLKYLK 46

This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism. Length = 46

>gnl|CDD|214339 CHL00027, rps15, ribosomal protein S15

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 2/71 (2%)

Query: 361 ESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSY 418
           E + GS   Q+   T KI+ L+S L  HKKD  S++GL+ ++ +R+RLL YL + +   Y
Sbjct: 16  EENRGSVEFQVFSFTNKIRRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLSKKNRVRY 75

Query: 419 CFVLSKLGLRD 429
             ++S+LG+R+
Sbjct: 76  KKLISQLGIRE 86

Length = 90

>gnl|CDD|240278 PTZ00119, PTZ00119, 40S ribosomal protein S15; Provisional

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 2/114 (1%)

Query: 307 QRINILEGFGGTPEYLLHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGS 366
           +R  I  G+ G  +Y         +    H +  +S +  K +   +R   +    D GS
Sbjct: 67  ERNQIPNGYIGLWQYDDIKHLRKNIINMLHLNCANSKQIHKYKKLCIRRCLQRRPFDTGS 126

Query: 367 ARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSY 418
           A VQI  LT KI +L + L    KD   ++ +  ++ RR++L+KYL +TD++ Y
Sbjct: 127 APVQIGCLTEKILNLRAHLILRCKDHPKKRTMSILLARRQKLMKYLYKTDFELY 180

Length = 302

>gnl|CDD|236287 PRK08561, rps15p, 30S ribosomal protein S15P; Reviewed

 Score = 37.5 bits (88), Expect = 0.003
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)

Query: 379 KHLSSALHKKDKHSRKGLQAMVQRRKRLLKYLRRTD 414
           KHL    + KD H+++GLQ +  + +RL+KY +RT 
Sbjct: 100 KHL--EENPKDLHNKRGLQLIESKIRRLVKYYKRTG 133

Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	437
PTZ00119	302	40S ribosomal protein S15; Provisional	100.0
TIGR00952	86	S15_bact ribosomal protein S15, bacterial/organell	99.97
PRK05626	89	rpsO 30S ribosomal protein S15; Reviewed	99.97
KOG2815	256	consensus Mitochondrial/choloroplast ribosomal pro	99.96
PF00312	83	Ribosomal_S15: Ribosomal protein S15; InterPro: IP	99.95
cd00353	80	Ribosomal_S15p_S13e Ribosomal protein S15 (prokary	99.95
CHL00027	90	rps15 ribosomal protein S15	99.95
COG0184	89	RpsO Ribosomal protein S15P/S13E [Translation, rib	99.94
cd00677	46	S15_NS1_EPRS_RNA-bind S15/NS1/EPRS_RNA-binding dom	99.44
PRK08561	151	rps15p 30S ribosomal protein S15P; Reviewed	98.94
KOG2815	256	consensus Mitochondrial/choloroplast ribosomal pro	98.45
PTZ00072	148	40S ribosomal protein S13; Provisional	93.65

>PTZ00119 40S ribosomal protein S15; Provisional

Probab=100.00  E-value=4.8e-33  Score=270.51  Aligned_cols=111  Identities=27%  Similarity=0.344  Sum_probs=107.9

Q ss_pred             CCcCCCCchHHHHhhcCcCCCCHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhhh--CCCCchhhhHHH
Q 013758          320 EYLLHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQ  397 (437)
Q Consensus       320 dy~~Lp~k~ElVKRifSLenaS~kEk~K~~kq~iI~kFqrhe~DTGS~EVQIAiLT~RI~~LteHL--nkKD~~SKRgL~  397 (437)
                      ...+++...|.|+|+|+|+||+.+|+.+.++++||++|+++++||||+|||||+||+||++|++||  |+||+|++|||+
T Consensus        80 ~~e~le~~~p~VkRILsLrNAs~kEi~K~rK~eIIkkfqr~~~DTGS~EVQIAiLTeRI~~LTeHLk~hkKD~~SrRGLl  159 (302)
T PTZ00119         80 QYDDIKHLRKNIINMLHLNCANSKQIHKYKKLCIRRCLQRRPFDTGSAPVQIGCLTEKILNLRAHLILRCKDHPKKRTMS  159 (302)
T ss_pred             cccchhhhCHHHHHHhccccCChHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccHhHHHHH
Confidence            456788899999999999999999999999999999999999999999999999999999999999  999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHhcCCCCC
Q 013758          398 AMVQRRKRLLKYLRRTDWDSYCFVLSKLGLRDN  430 (437)
Q Consensus       398 kLV~KRRKLLKYLRrkD~erY~~lI~kLGLR~~  430 (437)
                      +||++|+|||+||+++|+++|.+||++||||..
T Consensus       160 kLV~KRRKLLkYLKrkD~erY~~lIkkLGLRkv  192 (302)
T PTZ00119        160 ILLARRQKLMKYLYKTDFELYKHTCNLLKIKCI  192 (302)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhCCceE
Confidence            999999999999999999999999999999974

>TIGR00952 S15_bact ribosomal protein S15, bacterial/organelle

Probab=99.97  E-value=8.8e-32  Score=223.46  Aligned_cols=83  Identities=49%  Similarity=0.781  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Q 013758          347 KIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSK  424 (437)
Q Consensus       347 K~~kq~iI~kFqrhe~DTGS~EVQIAiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrkD~erY~~lI~k  424 (437)
                      +.+++++|++|++|+.||||+|||||+||+||++|++||  |+||+|++|||++||++|+|||+||+++|+++|.+||++
T Consensus         2 ~~~k~~li~~~~~~~~DtGS~eVQiA~LT~rI~~L~~Hl~~h~KD~~srrgL~~lv~kRkrlL~YL~~~d~~~Y~~li~~   81 (86)
T TIGR00952         2 KERKQEIIKEFQLHEKDTGSPEVQIALLTERINQLTEHLKANKKDHHSRRGLLKLVGRRRRLLKYLKRTDVERYRSLIKR   81 (86)
T ss_pred             HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            346789999999999999999999999999999999999  999999999999999999999999999999999999999


Q ss_pred             cCCCC
Q 013758          425 LGLRD  429 (437)
Q Consensus       425 LGLR~  429 (437)
                      ||||.
T Consensus        82 LglR~   86 (86)
T TIGR00952        82 LGLRR   86 (86)
T ss_pred             hCCCC
Confidence            99984

This model is built to recognize specifically bacterial, chloroplast, and mitochondrial ribosomal protein S15. The homologous proteins of Archaea and Eukarya are designated S13.

>PRK05626 rpsO 30S ribosomal protein S15; Reviewed

Probab=99.97  E-value=7.1e-32  Score=225.21  Aligned_cols=84  Identities=45%  Similarity=0.742  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 013758          346 MKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLS  423 (437)
Q Consensus       346 ~K~~kq~iI~kFqrhe~DTGS~EVQIAiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrkD~erY~~lI~  423 (437)
                      .+.+++++|++|++|++||||+|||||+||+||++|++||  |+||++++|||++||++|+|||+||+++|+++|.++|+
T Consensus         4 ~~~~k~~li~~f~~~~~DTGS~eVQiA~LT~rI~~L~~Hlk~~~KD~~srrgL~~lv~kRkrlL~YL~~~d~~~Y~~li~   83 (89)
T PRK05626          4 TKEKKAEIIKEYGRHEGDTGSPEVQVALLTERINHLTEHLKEHKKDHHSRRGLLKMVGQRRKLLDYLKKKDVERYRALIE   83 (89)
T ss_pred             CHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHhHHHHHHHHHhcCHHHHHHHHH
Confidence            3556789999999999999999999999999999999999  99999999999999999999999999999999999999


Q ss_pred             hcCCCC
Q 013758          424 KLGLRD  429 (437)
Q Consensus       424 kLGLR~  429 (437)
                      +||||.
T Consensus        84 ~LglR~   89 (89)
T PRK05626         84 RLGLRR   89 (89)
T ss_pred             HhCCCC
Confidence            999984

>KOG2815 consensus Mitochondrial/choloroplast ribosomal protein S15 [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=1.9e-30  Score=250.23  Aligned_cols=225  Identities=34%  Similarity=0.389  Sum_probs=196.1

Q ss_pred             CCcccccchhhhhHHHHHhhhhhhhHHHhhcChHHHHHHhhhcCCCCc--CCCcchHHHHHHHHHHHHhhhccccccCCC
Q 013758          206 ELPALVFGKEKKEEEKAVELERMKTDFVKMYSFEELGDKLKKLRPEGL--EGGFSLRELNERLMRLRVMEMNESNSKIGA  283 (437)
Q Consensus       206 ~lp~~vfgke~~~~~~~~~~~~~~~~~~~~y~~~elg~kl~~lrp~~~--~~wfsl~el~~rl~kl~~~e~~~~~~~~~g  283 (437)
                      .||..+++++.....+.+  +++...|++.|..+|||++++.++|.+.  +.|||+.+|+.++.|+..+++.+  .+..-
T Consensus        23 ~lp~~~~~~~~~~~~~~e--~e~~~~~Lk~~~~~~lr~k~r~~~~~~~~~es~ksl~~l~~~~~k~~~~~~~e--l~ke~   98 (256)
T KOG2815|consen   23 LLPKKGGAKEPDNSKGSE--SEKRSLFLKAYRGEELRKKYRDLKPLDKAPESVKSLFQLNPAIEKLDTVEKAE--LSKEV   98 (256)
T ss_pred             hccccccccccccccccc--hHHHHHhcccccHHHHhhhhhhccccccCchhhHHHHHhhhhhHHHHHHHHHH--HHHHH
Confidence            678888888877777666  6788999999999999999999999988  99999999999999999999754  33333


Q ss_pred             CchhHHhhhHHHHHHHH-HHHh--hhhhhhhhhccCCCCCCcCCCCchHHHHhhcCcCCCCHHHHHHHHHHHHHHH-hcc
Q 013758          284 GTISALRSSLARIQIEK-EEKA--RVQRINILEGFGGTPEYLLHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREE-FKM  359 (437)
Q Consensus       284 ~~~~~~r~~l~~l~~~~-~~k~--~~q~~~~~~~~gg~pdy~~Lp~k~ElVKRifSLenaS~kEk~K~~kq~iI~k-Fqr  359 (437)
                      ..+..+.+++..--.+. +...  +.|..+++..++|+++|+.+++..+.|.|||+.+|+++.|+.+++...+... |++
T Consensus        99 ~~~~~~~~~~e~k~~k~t~a~~~d~~~~~~~~~e~~~~~r~~l~~~kr~~~lril~~~n~ss~e~~k~~lk~~~~e~~~~  178 (256)
T KOG2815|consen   99 KNHKQDNNSLEEKFAKKTAAIRRDTFELEAIIIELSGKIRIKLLIDKREKILRILRRRNLSSFEKIKIKLKLVRKEPFQR  178 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHhcchhhhhchhhHhhcccHHHHHHHHhhhhccccHHHHHHHHHHhccCCccc
Confidence            34455555554222111 0101  6688888999999999999999999999999999999999999999999999 999


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCCCCCCCcc
Q 013758          360 SESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSKLGLRDNPDYK  434 (437)
Q Consensus       360 he~DTGS~EVQIAiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrkD~erY~~lI~kLGLR~~P~y~  434 (437)
                      .+.||||++||+|++|.+|+++..|.  |+||.+++++|..+|++|+++|+||++.|+++|.+++++||+++.|.|+
T Consensus       179 ~e~dtgs~~vQ~~~~t~~i~~~~r~~~~Hkkd~~~~~~l~~~~qkR~r~Lkyl~~~~~~~y~~~~~kl~~r~~~~lk  255 (256)
T KOG2815|consen  179 FESDTGSAEVQAAFPTVEIRKLSRHEELHKKDQASVRGLRQEVQKRQRALKYLARANRQRYVRTIKKLALRDLPTLK  255 (256)
T ss_pred             ccccccchhHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeeccccccccchhhhc
Confidence            99999999999999999999999997  9999999999999999999999999999999999999999999998775

>PF00312 Ribosomal_S15: Ribosomal protein S15; InterPro: IPR000589 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.95  E-value=3.9e-28  Score=198.83  Aligned_cols=80  Identities=51%  Similarity=0.820  Sum_probs=78.1

Q ss_pred             HHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcC
Q 013758          349 ELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSKLG  426 (437)
Q Consensus       349 ~kq~iI~kFqrhe~DTGS~EVQIAiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrkD~erY~~lI~kLG  426 (437)
                      .++++|++|++|++||||+|||||+||+||++|++|+  ||||++++|+|.++|++|+|||+||+++|+++|.++|++||
T Consensus         2 ~k~~~i~~~~~~~~dtgs~evqia~LT~rI~~L~~Hl~~~kkD~~skr~L~~lv~kRrrlL~YLrr~~~~~Y~~~~~~Lg   81 (83)
T PF00312_consen    2 RKQKSIKKFQRHPNDTGSPEVQIAILTERIRNLQEHLKKNKKDKHSKRGLLKLVSKRRRLLKYLRRKDFERYEWVLKKLG   81 (83)
T ss_dssp             HHHHHHHHHSSSTTSSSSHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhccccccceehhHHHHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence            4688999999999999999999999999999999999  99999999999999999999999999999999999999999


Q ss_pred             CC
Q 013758          427 LR  428 (437)
Q Consensus       427 LR  428 (437)
                      ||
T Consensus        82 lr   83 (83)
T PF00312_consen   82 LR   83 (83)
T ss_dssp             TT
T ss_pred             cC
Confidence            96

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S15 is one of the proteins from the small ribosomal subunit. In Escherichia coli, this protein binds to 16S ribosomal RNA and functions at early steps in ribosome assembly. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ,], groups bacterial and plant chloroplast S15; archaeal Haloarcula marismortui HmaS15 (HS11); yeast mitochondrial S28; and mammalian, yeast, Brugia pahangi and Wuchereria bancrofti S13. S15 is a protein of 80 to 250 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1YSH_E 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 1S1H_O 3MR8_O 3D5C_O 3MS0_O ....

>cd00353 Ribosomal_S15p_S13e Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome

Probab=99.95  E-value=4.2e-28  Score=197.66  Aligned_cols=77  Identities=47%  Similarity=0.770  Sum_probs=75.4

Q ss_pred             HHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcC
Q 013758          350 LAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSKLG  426 (437)
Q Consensus       350 kq~iI~kFqrhe~DTGS~EVQIAiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrkD~erY~~lI~kLG  426 (437)
                      +++++++|+++++||||+|||||+||+||++|++||  |+||++++|||.+||++|+|||+||+++|+++|.|+|+.||
T Consensus         2 ~~~i~~~~~~~~~DtGs~evQia~LT~rI~~L~~Hl~~~~KD~~~krgL~~lv~kRrrLL~YLk~~~~~~y~~~i~~L~   80 (80)
T cd00353           2 KQEILKEFGLAEGDTGSPEVQLALLTERIVNLTEHLEKNKKDKHSKRGLLLLVSKRRRLLKYLKRKDRLRYEWLIEKLG   80 (80)
T ss_pred             HHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHccccchHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHhcc
Confidence            578999999999999999999999999999999999  99999999999999999999999999999999999999997

S15 also plays an important autoregulatory role by binding and preventing its own mRNA from being translated. S15 has a predominantly alpha-helical fold that is highly structured except for the N-terminal alpha helix.

>CHL00027 rps15 ribosomal protein S15

Probab=99.95  E-value=7.4e-28  Score=201.83  Aligned_cols=71  Identities=39%  Similarity=0.660  Sum_probs=69.8

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCCCCC
Q 013758          360 SESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSKLGLRDN  430 (437)
Q Consensus       360 he~DTGS~EVQIAiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrkD~erY~~lI~kLGLR~~  430 (437)
                      +++||||+|||||+||+||++|++||  |+||++++|||++||++|+|||+||+++|+++|+++|++||||+.
T Consensus        15 ~~~DTGS~evQiA~LT~rI~~Lt~Hlk~hkKD~~s~RgL~~lv~kRkrLL~YL~r~d~~~Y~~li~~Lglr~~   87 (90)
T CHL00027         15 KEENRGSVEFQVFSFTNKIRRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLSKKNRVRYKKLISQLGIREL   87 (90)
T ss_pred             CCCCCCChHHHHHHHHHHHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCC
Confidence            89999999999999999999999999  999999999999999999999999999999999999999999974

>COG0184 RpsO Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=1.7e-26  Score=193.29  Aligned_cols=82  Identities=48%  Similarity=0.773  Sum_probs=79.0

Q ss_pred             HHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhc
Q 013758          348 IELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSKL  425 (437)
Q Consensus       348 ~~kq~iI~kFqrhe~DTGS~EVQIAiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrkD~erY~~lI~kL  425 (437)
                      ..+++|+++|+.++.||||+|||||+||+||++|++||  ||||+||+|||+.||+||++||+||+++|.++|.|+|+.|
T Consensus         6 ~~k~~l~~eyg~~~~dtgs~evq~a~Lt~ri~~L~~Hlk~hkKD~~srRGL~~~vskrrrLl~Ylk~~~~~~y~~li~~l   85 (89)
T COG0184           6 EIKQELRDEYGIPEVDTGSGEVQLALLTERINNLTEHLKEHKKDHHSRRGLLLLVSKRRRLLKYLKRKDVLRYRWLIKKL   85 (89)
T ss_pred             HHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHCCcchhHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHh
Confidence            44578999999999999999999999999999999999  9999999999999999999999999999999999999999


Q ss_pred             CCCC
Q 013758          426 GLRD  429 (437)
Q Consensus       426 GLR~  429 (437)
                      ||+.
T Consensus        86 ~lr~   89 (89)
T COG0184          86 GLRR   89 (89)
T ss_pred             hccC
Confidence            9973

>cd00677 S15_NS1_EPRS_RNA-bind S15/NS1/EPRS_RNA-binding domain

Probab=99.44  E-value=1.2e-13  Score=101.74  Aligned_cols=44  Identities=57%  Similarity=0.888  Sum_probs=42.9

Q ss_pred             hHHHHHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHH
Q 013758          368 RVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLR  411 (437)
Q Consensus       368 EVQIAiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLR  411 (437)
                      |||||+||++|++|++|+  |+||++++|+|.++|++|++||+||+
T Consensus         1 ~vqia~lt~~i~~L~~hl~~~~kD~~~kr~L~~~v~kr~rLl~ylk   46 (46)
T cd00677           1 EVQIALLTERIRNLKEHLAKNKKDKHSKRGLDLLVSKRLRLLKYLK   46 (46)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHHHhC
Confidence            699999999999999999  99999999999999999999999995

This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism.

>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed

Probab=98.94  E-value=9.3e-10  Score=100.53  Aligned_cols=44  Identities=36%  Similarity=0.618  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhcC
Q 013758          371 IAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTD  414 (437)
Q Consensus       371 IAiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrkD  414 (437)
                      .-.||+||.+|++||  |+||+|++|||+.+|++|++||+||+++|
T Consensus        88 L~~L~~ri~~L~~HL~~nkKD~~skRgL~~~~skrrRLl~Yyk~~~  133 (151)
T PRK08561         88 LRNLIKKAVNLRKHLEENPKDLHNKRGLQLIESKIRRLVKYYKRTG  133 (151)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHhcC
Confidence            467999999999999  99999999999999999999999999986

>KOG2815 consensus Mitochondrial/choloroplast ribosomal protein S15 [Translation, ribosomal structure and biogenesis]

Probab=98.45  E-value=1.5e-07  Score=92.40  Aligned_cols=116  Identities=17%  Similarity=0.215  Sum_probs=108.4

Q ss_pred             CCCCcCCCCchHHHHhhcCcCCCCHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhhh--CCCCchhhhH
Q 013758          318 TPEYLLHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKG  395 (437)
Q Consensus       318 ~pdy~~Lp~k~ElVKRifSLenaS~kEk~K~~kq~iI~kFqrhe~DTGS~EVQIAiLT~RI~~LteHL--nkKD~~SKRg  395 (437)
                      +.++.++..+++.|+.+|.+.++..+.....+ +++++..+.|..|.++.|.++|.+|+=|++.+.|+  +..+...+..
T Consensus        60 ~r~~~~~~~~~es~ksl~~l~~~~~k~~~~~~-~el~ke~~~~~~~~~~~e~k~~k~t~a~~~d~~~~~~~~~e~~~~~r  138 (256)
T KOG2815|consen   60 YRDLKPLDKAPESVKSLFQLNPAIEKLDTVEK-AELSKEVKNHKQDNNSLEEKFAKKTAAIRRDTFELEAIIIELSGKIR  138 (256)
T ss_pred             hhhccccccCchhhHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHhcchhhhhchhh
Confidence            55777778899999999999999999999888 99999999999999999999999999999999998  7888889999


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCCCCCCCcc
Q 013758          396 LQAMVQRRKRLLKYLRRTDWDSYCFVLSKLGLRDNPDYK  434 (437)
Q Consensus       396 L~kLV~KRRKLLKYLRrkD~erY~~lI~kLGLR~~P~y~  434 (437)
                      +..++.+|+++|+||++.|..++++++..|.+-+.++|.
T Consensus       139 ~~l~~~kr~~~lril~~~n~ss~e~~k~~lk~~~~e~~~  177 (256)
T KOG2815|consen  139 IKLLIDKREKILRILRRRNLSSFEKIKIKLKLVRKEPFQ  177 (256)
T ss_pred             HhhcccHHHHHHHHhhhhccccHHHHHHHHHHhccCCcc
Confidence            999999999999999999999999999999998876654

>PTZ00072 40S ribosomal protein S13; Provisional

Probab=93.65  E-value=0.12  Score=48.06  Aligned_cols=42  Identities=33%  Similarity=0.419  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhc
Q 013758          372 AQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRT  413 (437)
Q Consensus       372 AiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrk  413 (437)
                      -.|-.|-.++..||  |+||++++++|...-++=++|.+|.+++
T Consensus        86 y~LikKAv~iRkHLe~n~kD~~sK~~LiLiESkI~RL~rYYk~~  129 (148)
T PTZ00072         86 YFLIKKAVSIRKHLEKNRKDKDSKFRLILVESRIHRLARYYKRT  129 (148)
T ss_pred             HHHHHHHHHHHHHHHHcccchhhhHHHHHHHHHHHHHHHHHhhc
Confidence            45666777889999  9999999999999999999999999777

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	437
1a32_A	88	Ribosomal Protein S15 From Bacillus Stearothermophi		8e-09
2i2p_O	88	Crystal Structure Of Ribosome With Messenger Rna An		3e-08
2avy_O	89	Crystal Structure Of The Bacterial Ribosome From Es		3e-08
1qd7_H	85	Partial Model For 30s Ribosomal Subunit Length = 85		3e-08
1p6g_O	88	Real Space Refined Coordinates Of The 30s Subunit F		3e-08
2gy9_O	86	Structure Of The 30s Subunit Of A Pre-Translocation		3e-08
2qou_O	89	Crystal Structure Of The Bacterial Ribosome From Es		3e-08
1fka_O	89	Structure Of Functionally Activated Small Ribosomal		5e-07
1g1x_B	88	Structure Of Ribosomal Proteins S15, S6, S18, And 1		5e-07
1i94_O	88	Crystal Structures Of The Small Ribosomal Subunit W		9e-07
1fjg_O	89	Fitting Of Components With Known Structure Into An		9e-07
1f7y_A	89	The Crystal Structure Of Two Uucg Loops Highlights		2e-06
1kuq_A	87	Crystal Structure Of T3c Mutant S15 Ribosomal Prote		7e-06
1dk1_A	86	Detailed View Of A Key Element Of The Ribosome Asse		1e-05
4iyl_A	93	30s Ribosomal Protein S15 From Campylobacter Jejuni		8e-05

>pdb|1A32|A Chain A, Ribosomal Protein S15 From Bacillus Stearothermophilus Length = 88

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 355 EEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQXXXXXXXXXXX 412
           E+FK+ E+D GS  VQIA LT +I +L+  L  HKKD HSR+GL  MV            
Sbjct: 12  EQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRN 71
Query: 413 TDWDSYCFVLSKLGLR 428
            D   Y  ++ KLGLR
Sbjct: 72  KDVARYREIVEKLGLR 87

>pdb|2I2P|O Chain O, Crystal Structure Of Ribosome With Messenger Rna And The Anticodon Stem-Loop Of P-Site Trna. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 88

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 351 AKVREEFKMSESDCGSARVQIAQLTTKIKHLSS--ALHKKDKHSRKGLQAMVQXXXXXXX 408
           AK+  EF    +D GS  VQ+A LT +I HL    A HKKD HSR+GL  MV        
Sbjct: 8   AKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLD 67
Query: 409 XXXXTDWDSYCFVLSKLGLR 428
                D   Y  ++ +LGLR
Sbjct: 68  YLKRKDVARYTRLIERLGLR 87

>pdb|2AVY|O Chain O, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 89

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 351 AKVREEFKMSESDCGSARVQIAQLTTKIKHLSS--ALHKKDKHSRKGLQAMVQXXXXXXX 408
           AK+  EF    +D GS  VQ+A LT +I HL    A HKKD HSR+GL  MV        
Sbjct: 9   AKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLD 68
Query: 409 XXXXTDWDSYCFVLSKLGLR 428
                D   Y  ++ +LGLR
Sbjct: 69  YLKRKDVARYTRLIERLGLR 88

>pdb|1QD7|H Chain H, Partial Model For 30s Ribosomal Subunit Length = 85

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 355 EEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQXXXXXXXXXXX 412
           E+FK+ E+D GS  VQIA LT +I +L+  L  HKKD HSR+GL  MV            
Sbjct: 11  EQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRN 70
Query: 413 TDWDSYCFVLSKLGL 427
            D   Y  ++ KLGL
Sbjct: 71  KDVARYREIVEKLGL 85

>pdb|1P6G|O Chain O, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 88

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 351 AKVREEFKMSESDCGSARVQIAQLTTKIKHLSS--ALHKKDKHSRKGLQAMVQXXXXXXX 408
           AK+  EF    +D GS  VQ+A LT +I HL    A HKKD HSR+GL  MV        
Sbjct: 8   AKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLD 67
Query: 409 XXXXTDWDSYCFVLSKLGLR 428
                D   Y  ++ +LGLR
Sbjct: 68  YLKRKDVARYTQLIERLGLR 87

>pdb|2GY9|O Chain O, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 86

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 351 AKVREEFKMSESDCGSARVQIAQLTTKIKHLSS--ALHKKDKHSRKGLQAMVQXXXXXXX 408
           AK+  EF    +D GS  VQ+A LT +I HL    A HKKD HSR+GL  MV        
Sbjct: 7   AKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLD 66
Query: 409 XXXXTDWDSYCFVLSKLGLR 428
                D   Y  ++ +LGLR
Sbjct: 67  YLKRKDVARYTQLIERLGLR 86

>pdb|2QOU|O Chain O, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin. This File Contains The 30s Subunit Of The First 70s Ribosome, With Spectinomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes. Length = 89

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 351 AKVREEFKMSESDCGSARVQIAQLTTKIKHLSS--ALHKKDKHSRKGLQAMVQXXXXXXX 408
           AK+  EF    +D GS  VQ+A LT +I HL    A HKKD HSR+GL  MV        
Sbjct: 9   AKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLD 68
Query: 409 XXXXTDWDSYCFVLSKLGLR 428
                D   Y  ++ +LGLR
Sbjct: 69  YLKRKDVARYTQLIERLGLR 88

>pdb|1FKA|O Chain O, Structure Of Functionally Activated Small Ribosomal Subunit At 3.3 A Resolution Length = 89

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 347 KIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQXXX 404
           K E  KV +EF     D GS  VQ+A LT +I  LS  L  HKKD HS +GL  MV    
Sbjct: 5   KEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRR 64
Query: 405 XXXXXXXXTDWDSYCFVLSKLGLR 428
                    D + Y  ++ KLGLR
Sbjct: 65  RLLRYLQREDPERYREIVEKLGLR 88

>pdb|1G1X|B Chain B, Structure Of Ribosomal Proteins S15, S6, S18, And 16s Ribosomal Rna Length = 88

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 347 KIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQXXX 404
           K E  KV +EF     D GS  VQ+A LT +I  LS  L  HKKD HS +GL  MV    
Sbjct: 4   KEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRR 63
Query: 405 XXXXXXXXTDWDSYCFVLSKLGLR 428
                    D + Y  ++ KLGLR
Sbjct: 64  RLLRYLQREDPERYREIVEKLGLR 87

>pdb|1I94|O Chain O, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 88

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 347 KIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQXXX 404
           K E  KV +EF     D GS  VQ+A LT +I  LS  L  HKKD HS +GL  MV    
Sbjct: 4   KEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRR 63
Query: 405 XXXXXXXXTDWDSYCFVLSKLGLR 428
                    D + Y  ++ KLG+R
Sbjct: 64  RLLRYLQREDPERYRALIEKLGIR 87

>pdb|1FJG|O Chain O, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 89

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 347 KIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQXXX 404
           K E  KV +EF     D GS  VQ+A LT +I  LS  L  HKKD HS +GL  MV    
Sbjct: 5   KEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRR 64
Query: 405 XXXXXXXXTDWDSYCFVLSKLGLR 428
                    D + Y  ++ KLG+R
Sbjct: 65  RLLRYLQREDPERYRALIEKLGIR 88

>pdb|1F7Y|A Chain A, The Crystal Structure Of Two Uucg Loops Highlights The Role Played By 2'-Hydroxyl Groups In Its Unusual Stability Length = 89

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 347 KIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQXXX 404
           K E  KV +EF     D GS  VQ+A LT +I  LS  L  HKKD HS +GL   V    
Sbjct: 5   KEEKQKVXQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLXXVGQRR 64
Query: 405 XXXXXXXXTDWDSYCFVLSKLGLR 428
                    D + Y  ++ KLG+R
Sbjct: 65  RLLRYLQREDPERYRXLIEKLGIR 88

>pdb|1KUQ|A Chain A, Crystal Structure Of T3c Mutant S15 Ribosomal Protein In Complex With 16s Rrna Length = 87

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 347 KIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQXXX 404
           K E  KV +EF     D GS  VQ+A LT +I  LS  L  HKKD HS +GL  MV    
Sbjct: 5   KEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRR 64
Query: 405 XXXXXXXXTDWDSYCFVLSKLGL 427
                    D + Y  ++ KLG+
Sbjct: 65  RLLRYLQREDPERYRALIEKLGI 87

>pdb|1DK1|A Chain A, Detailed View Of A Key Element Of The Ribosome Assembly: Crystal Structure Of The S15-Rrna Complex Length = 86

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 347 KIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQXXX 404
           K E  KV +EF     D GS  VQ+A LT +I  LS  L  HKKD HS +GL   V    
Sbjct: 4   KEEKQKVXQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLXXVGQRR 63
Query: 405 XXXXXXXXTDWDSYCFVLSKLGL 427
                    D + Y  ++ KLG+
Sbjct: 64  RLLRYLQREDPERYRXLIEKLGI 86

>pdb|4IYL|A Chain A, 30s Ribosomal Protein S15 From Campylobacter Jejuni Length = 93

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 351 AKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQXXXXXXX 408
           A++  +F     D GS  VQ+A LT +I  L+  L  +KKD  SR GL  +V        
Sbjct: 12  AEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLKIYKKDFSSRLGLLKLVGQRKRLLS 71
Query: 409 XXXXTDWDSYCFVLSKLGLRD 429
                D++SY  ++++L LRD
Sbjct: 72  YLKRKDYNSYSKLITELNLRD 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	437
3ulw_A	93	30S ribosomal protein S15; structural genomics, ID	4e-25
2vqe_O	89	30S ribosomal protein S15; tRNA-binding, rRNA-bind	3e-24
1a32_A	88	Ribosomal protein S15; multiwavelength anomalous d	5e-24
3r8n_O	88	30S ribosomal protein S15; protein biosynthesis, R	6e-24
3bbn_O	90	Ribosomal protein S15; small ribosomal subunit, sp	4e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>2vqe_O 30S ribosomal protein S15; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1eg0_F* 1gix_R* 1hnw_O* 1hnx_O* 1hnz_O* 1hr0_O 1ibk_O* 1ibl_O* 1ibm_O 1jgo_R* 1jgp_R* 1jgq_R* 1ml5_R* 1xmo_O* 1xmq_O* 1xnq_O* 1xnr_O* 1yl4_R 2b64_O* 2b9m_O* ... Length = 89

 Score = 94.9 bits (237), Expect = 3e-24
 Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 5/91 (5%)

Query: 340 MSSAEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQ 397
           M   ++ K ++ +   EF     D GS  VQ+A LT +I  LS  L  HKKD HS +GL 
Sbjct: 1   MPITKEEKQKVIQ---EFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLL 57

Query: 398 AMVQRRKRLLKYLRRTDWDSYCFVLSKLGLR 428
            MV +R+RLL+YL+R D + Y  ++ KLG+R
Sbjct: 58  MMVGQRRRLLRYLQREDPERYRALIEKLGIR 88

>1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Geobacillus stearothermophilus} SCOP: a.16.1.2 PDB: 1qd7_H Length = 88

 Score = 94.2 bits (235), Expect = 5e-24
 Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 2/80 (2%)

Query: 351 AKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLK 408
            ++ E+FK+ E+D GS  VQIA LT +I +L+  L  HKKD HSR+GL  MV +R+RLL 
Sbjct: 8   REIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLA 67

Query: 409 YLRRTDWDSYCFVLSKLGLR 428
           YLR  D   Y  ++ KLGLR
Sbjct: 68  YLRNKDVARYREIVEKLGLR 87

>3bbn_O Ribosomal protein S15; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 90

 Score = 86.2 bits (214), Expect = 4e-21
 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 356 EFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRT 413
             +  E + GS   Q+   T KI+ L+  L  HKKD  S++GL+  + +R+RLL YL + 
Sbjct: 11  SDEKKEENKGSVEFQVFCFTNKIRRLTLHLELHKKDYSSQRGLRKTLGKRQRLLAYLLKI 70

Query: 414 DWDSYCFVLSKLGLRD 429
           +   Y  ++SKL +R+
Sbjct: 71  NGVRYKELISKLNIRE 86

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 1e-10
 Identities = 45/337 (13%), Positives = 103/337 (30%), Gaps = 106/337 (31%)

Query: 8   PKHRSLTNPSLIHLFSTSQNDNNDNNNNYSNSSLNSYFSDVKASLRKQTPPNQTTSSSSS 67
           P+    TNP  + + + S  D     +N+ + + +   + +++SL    P          
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP---------- 368

Query: 68  SSRGPPSKVASLEEIRR---NLAEFRQRSTVPPPI------ESNSTESQSQSQTQSQSQS 118
                        E R+    L+ F   + +P  +      +   ++             
Sbjct: 369 ------------AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM----------- 405

Query: 119 QHISFQELYKRNTVNETLASKPSGKPSFEAIRESLRQMRARSNNDNNNNNRGNGVKNSDP 178
             +   +L+K      +L  K                            +          
Sbjct: 406 --VVVNKLHKY-----SLVEK------------------------QPKEST--------- 425

Query: 179 LSLKNFTNTLRMKPADDNA-HRVIGGSQELPALVFGKEKKEEEKAVELERMKTDFVKMYS 237
           +S+ +    L++K  ++ A HR I     +P            K  + + +   ++  Y 
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIP------------KTFDSDDLIPPYLDQYF 473

Query: 238 FEELGDKLKKLRPEGLEGGFSLRELNERLM--RLRVMEMNESNSKIGAGTISALRSSLAR 295
           +  +G  LK +        F +  L+ R +  ++R      + S     T+  L+    +
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK--FYK 531

Query: 296 IQIEKEEKARVQRINILEGFGGTPEYLLHPPKEHLVE 332
             I   +    + +N +  F       L   +E+L+ 
Sbjct: 532 PYICDNDPKYERLVNAILDF-------LPKIEENLIC 561

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 42/279 (15%), Positives = 82/279 (29%), Gaps = 66/279 (23%)

Query: 174 KNSD--PLSLKNFTNTLRMKPADDNAHRVIGGSQELPALVFGKEKKEEEKAVEL------ 225
           +  D   +    F +    K   D    ++   +E+  ++    K      + L      
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSILS-KEEIDHII--MSKDAVSGTLRLFWTLLS 73

Query: 226 --ERMKTDFV-----KMYSFEELGDKLKK--LRPEGLEGGFSLRELNERLMRLRVMEMNE 276
             E M   FV       Y F  L   +K    +P  +   +   E  +RL          
Sbjct: 74  KQEEMVQKFVEEVLRINYKF--LMSPIKTEQRQPSMMTRMYI--EQRDRLYN-------- 121

Query: 277 SNSKIGAGTIS------ALRSSLARIQIEKEEKARVQRINILEGFGGTPEYLLHPPKEHL 330
            N       +S       LR +L  ++  K     V    +++G  G+        K  +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAK----NV----LIDGVLGSG-------KTWV 166

Query: 331 VEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSALHKKDK 390
                    +      K++     + F ++  +C S    +  L   +  +      +  
Sbjct: 167 A--------LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 391 HSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSKLGLRD 429
           HS      +   +  L + L+      Y   L  L L +
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKP---YENCL--LVLLN 252

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	437
3r8n_O	88	30S ribosomal protein S15; protein biosynthesis, R	99.98
1a32_A	88	Ribosomal protein S15; multiwavelength anomalous d	99.98
2vqe_O	89	30S ribosomal protein S15; tRNA-binding, rRNA-bind	99.98
4a5u_B	88	30S ribosomal protein S15; transferase-RNA binding	99.97
3ulw_A	93	30S ribosomal protein S15; structural genomics, ID	99.97
3bbn_O	90	Ribosomal protein S15; small ribosomal subunit, sp	99.95
3j20_Q	158	30S ribosomal protein S15P/S13E; archaea, archaeal	99.34
3u5c_N	151	S27A, YS15, 40S ribosomal protein S13; translation	96.69
2xzm_O	153	RPS13E; ribosome, translation; 3.93A {Tetrahymena	94.84

>1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Geobacillus stearothermophilus} SCOP: a.16.1.2 PDB: 1qd7_H

Probab=99.98  E-value=1.4e-32  Score=227.97  Aligned_cols=83  Identities=49%  Similarity=0.742  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Q 013758          347 KIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSK  424 (437)
Q Consensus       347 K~~kq~iI~kFqrhe~DTGS~EVQIAiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrkD~erY~~lI~k  424 (437)
                      +.++++||++|++|++||||+|||||+||+||++|++||  |+||+|++|||++||++|+|||+||+++|+++|.++|++
T Consensus         4 ~~~K~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YL~~~d~~rY~~li~~   83 (88)
T 1a32_A            4 QERKREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKDVARYREIVEK   83 (88)
T ss_dssp             HHHHHHHHHHTCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            456789999999999999999999999999999999999  999999999999999999999999999999999999999


Q ss_pred             cCCCC
Q 013758          425 LGLRD  429 (437)
Q Consensus       425 LGLR~  429 (437)
                      ||||.
T Consensus        84 Lglr~   88 (88)
T 1a32_A           84 LGLRR   88 (88)
T ss_dssp             HTC--
T ss_pred             hCCCC
Confidence            99984

>2vqe_O 30S ribosomal protein S15; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1eg0_F* 1gix_R* 1hnw_O* 1hnx_O* 1hnz_O* 1hr0_O 1ibk_O* 1ibl_O* 1ibm_O 1jgo_R* 1jgp_R* 1jgq_R* 1ml5_R* 1xmo_O* 1xmq_O* 1xnq_O* 1xnr_O* 1yl4_R 2b64_O* 2b9m_O* ...

Probab=99.98  E-value=1.5e-32  Score=228.20  Aligned_cols=83  Identities=49%  Similarity=0.716  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Q 013758          347 KIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSK  424 (437)
Q Consensus       347 K~~kq~iI~kFqrhe~DTGS~EVQIAiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrkD~erY~~lI~k  424 (437)
                      +.++++||++|++|++||||+|||||+||+||++|++||  |+||+|++|||++||++|+|||+||+++|+++|.++|++
T Consensus         5 ~~~K~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YLk~~d~~rY~~li~~   84 (89)
T 2vqe_O            5 KEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRALIEK   84 (89)
T ss_dssp             HHHHHHHHHTTCSSTTCCSSHHHHHHHHHHHHHHHHHHTTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCcccccchhHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            456789999999999999999999999999999999999  999999999999999999999999999999999999999


Q ss_pred             cCCCC
Q 013758          425 LGLRD  429 (437)
Q Consensus       425 LGLR~  429 (437)
                      ||||.
T Consensus        85 Lglr~   89 (89)
T 2vqe_O           85 LGIRG   89 (89)
T ss_dssp             HTCCC
T ss_pred             hCCCC
Confidence            99984

>4a5u_B 30S ribosomal protein S15; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O* 3j18_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3r8n_O 4gd1_O 4gd2_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* ...

Probab=99.97  E-value=2.2e-32  Score=226.88  Aligned_cols=83  Identities=46%  Similarity=0.736  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Q 013758          347 KIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSK  424 (437)
Q Consensus       347 K~~kq~iI~kFqrhe~DTGS~EVQIAiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrkD~erY~~lI~k  424 (437)
                      +.++++||++|++|++||||+|||||+||+||++|++||  |+||+|++|||++||++|+|||+||+++|+++|.++|++
T Consensus         4 ~~~K~~ii~~~~~~~~DTGS~EvQiA~LT~rI~~L~~Hlk~hkKD~~srRgL~~lv~kRrrLL~YLk~~d~~rY~~li~~   83 (88)
T 4a5u_B            4 TEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQLIER   83 (88)
T ss_dssp             HHHHHHHHHHHSSSTTCTTCHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            467789999999999999999999999999999999999  999999999999999999999999999999999999999


Q ss_pred             cCCCC
Q 013758          425 LGLRD  429 (437)
Q Consensus       425 LGLR~  429 (437)
                      ||||.
T Consensus        84 LglR~   88 (88)
T 4a5u_B           84 LGLRR   88 (88)
T ss_dssp             TTTTC
T ss_pred             hCCCC
Confidence            99984

>3bbn_O Ribosomal protein S15; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.95  E-value=1.7e-29  Score=210.46  Aligned_cols=73  Identities=37%  Similarity=0.546  Sum_probs=70.8

Q ss_pred             ccCCCCCCChhHHHHHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCCCCC
Q 013758          358 KMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSKLGLRDN  430 (437)
Q Consensus       358 qrhe~DTGS~EVQIAiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrkD~erY~~lI~kLGLR~~  430 (437)
                      .+|++||||+|||||+||+||++|++||  |+||+|++|||++||++|+|||+||+++|+++|.++|++|||++.
T Consensus        13 ~r~~~DTGS~EVQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YLk~kd~~rY~~li~~LgLr~~   87 (90)
T 3bbn_O           13 EKKEENKGSVEFQVFCFTNKIRRLTLHLELHKKDYSSQRGLRKTLGKRQRLLAYLLKINGVRYKELISKLNIREL   87 (90)
T ss_dssp             SCCSSSSCSTTHHHHHHHHHHTTTTTTTTTCTTCSTTSHHHHHHHHHHHHHHTTHHHHCSHHHHTTTTTTTCCC-
T ss_pred             ccCCCCCCChhHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCC
Confidence            6789999999999999999999999999  999999999999999999999999999999999999999999984

>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.34  E-value=7.3e-13  Score=120.04  Aligned_cols=76  Identities=28%  Similarity=0.482  Sum_probs=62.6

Q ss_pred             HHhhcCcCCCCHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHH
Q 013758          331 VEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLK  408 (437)
Q Consensus       331 VKRifSLenaS~kEk~K~~kq~iI~kFqrhe~DTGS~EVQIAiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLK  408 (437)
                      |+-+.++.+++.    -.++.+|+++.+-.    ....-|+..||+||.+|++||  |+||+|++|||++||+||++||+
T Consensus        63 Vk~vt~~~~~~~----G~ki~~iLk~~gl~----p~iPEDL~~Lt~RI~~Lt~HLk~hkKD~hSrRgL~~lv~kRrrLL~  134 (158)
T 3j20_Q           63 VKLFKDPDNPNR----NLTITRILEKHGLA----PEIPEDLMFLIRRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVK  134 (158)
T ss_dssp             HHHHHCSSSTTS----CCCTHHHHHHHTCS----CSSCHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             eeeccccccccC----cCcHHHHHHHcCCC----CCCHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence            566667777773    22335677776543    336678999999999999999  99999999999999999999999


Q ss_pred             HHHhcC
Q 013758          409 YLRRTD  414 (437)
Q Consensus       409 YLRrkD  414 (437)
                      ||+++|
T Consensus       135 YLk~kd  140 (158)
T 3j20_Q          135 YYKRKG  140 (158)
T ss_dssp             HHHHHT
T ss_pred             HHHhcC
Confidence            999998

>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O

Probab=96.69  E-value=0.0017  Score=58.75  Aligned_cols=43  Identities=28%  Similarity=0.363  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhcC
Q 013758          372 AQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTD  414 (437)
Q Consensus       372 AiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrkD  414 (437)
                      -.|-.|..+|..||  |+||++++++|...-++.++|.+|.+++.
T Consensus        89 ~~LikKAv~lrkHLe~n~kD~~sK~~L~liESkI~RL~rYYk~~~  133 (151)
T 3u5c_N           89 YYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYRTVA  133 (151)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45667788999999  99999999999999999999999999874

>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O

Probab=94.84  E-value=0.032  Score=50.61  Aligned_cols=42  Identities=29%  Similarity=0.373  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhcC
Q 013758          373 QLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTD  414 (437)
Q Consensus       373 iLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrkD  414 (437)
                      .|-.|-.++..||  |+||++++++|...-++=++|.+|.+++.
T Consensus        92 ~LikKAv~lRkHLe~n~kD~~sK~~L~LiESkI~RL~rYYk~~~  135 (153)
T 2xzm_O           92 FLIKKALSIRKHLEKNRKDKDSKYRLILVESRIHRLSRYYKLNQ  135 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHhcC
Confidence            3445566788999  99999999999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	437
d1kuqa_	84	a.16.1.2 (A:) Ribosomal protein S15 {Thermus therm	2e-24
d1vs5o1	88	a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherich	4e-24
d1a32a_	85	a.16.1.2 (A:) Ribosomal protein S15 {Bacillus stea	9e-23

>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus [TaxId: 274]} Length = 84

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Thermus thermophilus [TaxId: 274]

 Score = 94.0 bits (234), Expect = 2e-24
 Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 2/83 (2%)

Query: 347 KIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRK 404
           K E  KV +EF     D GS  VQ+A LT +I  LS  L  HKKD HS +GL  MV +R+
Sbjct: 2   KEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRR 61

Query: 405 RLLKYLRRTDWDSYCFVLSKLGL 427
           RLL+YL+R D + Y  ++ KLG+
Sbjct: 62  RLLRYLQREDPERYRALIEKLGI 84

>d1vs5o1 a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherichia coli [TaxId: 562]} Length = 88

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Escherichia coli [TaxId: 562]

 Score = 93.2 bits (232), Expect = 4e-24
 Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 2/84 (2%)

Query: 347 KIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRK 404
               AK+  EF    +D GS  VQ+A LT +I HL      HKKD HSR+GL  MV +R+
Sbjct: 4   TEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRR 63

Query: 405 RLLKYLRRTDWDSYCFVLSKLGLR 428
           +LL YL+R D   Y  ++ +LGLR
Sbjct: 64  KLLDYLKRKDVARYTRLIERLGLR 87

>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus stearothermophilus [TaxId: 1422]} Length = 85

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 89.4 bits (222), Expect = 9e-23
 Identities = 40/79 (50%), Positives = 53/79 (67%), Gaps = 2/79 (2%)

Query: 351 AKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLK 408
            ++ E+FK+ E+D GS  VQIA LT +I +L+  L  HKKD HSR+GL  MV +R+RLL 
Sbjct: 7   REIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLA 66

Query: 409 YLRRTDWDSYCFVLSKLGL 427
           YLR  D   Y  ++ KLGL
Sbjct: 67  YLRNKDVARYREIVEKLGL 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	437
d1vs5o1	88	Ribosomal protein S15 {Escherichia coli [TaxId: 56	99.97
d1kuqa_	84	Ribosomal protein S15 {Thermus thermophilus [TaxId	99.97
d1a32a_	85	Ribosomal protein S15 {Bacillus stearothermophilus	99.97

>d1vs5o1 a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.1e-31  Score=220.59  Aligned_cols=83  Identities=46%  Similarity=0.733  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Q 013758          347 KIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSK  424 (437)
Q Consensus       347 K~~kq~iI~kFqrhe~DTGS~EVQIAiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrkD~erY~~lI~k  424 (437)
                      +.++++||++|++|+.||||+|||||+||+||++|++||  ||||++++|||.+||++|+|||+||+++|+++|.+||++
T Consensus         4 ~~~k~~ii~~~~~~~~DtGS~evQiA~lT~rI~~Lt~Hl~~~kKD~~s~rgL~~lv~kRkklL~YL~~~d~~~Y~~vi~~   83 (88)
T d1vs5o1           4 TEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTRLIER   83 (88)
T ss_dssp             HHHHHHHHHHHCSSSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCCCTTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            456788999999999999999999999999999999999  999999999999999999999999999999999999999


Q ss_pred             cCCCC
Q 013758          425 LGLRD  429 (437)
Q Consensus       425 LGLR~  429 (437)
                      ||||.
T Consensus        84 LgLrk   88 (88)
T d1vs5o1          84 LGLRR   88 (88)
T ss_dssp             TTCCC
T ss_pred             hCCCC
Confidence            99984

>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=7.5e-32  Score=219.71  Aligned_cols=81  Identities=49%  Similarity=0.714  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Q 013758          347 KIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSK  424 (437)
Q Consensus       347 K~~kq~iI~kFqrhe~DTGS~EVQIAiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrkD~erY~~lI~k  424 (437)
                      |.+++++|++|++|+.||||+|||||+||+||++|++||  ||||++++|||.+||++|++||+||+++|+++|.+||++
T Consensus         2 k~~K~~ii~~~~~~~~DtGS~evQiA~lT~rI~~L~~Hlk~~kkD~~s~rgL~~lv~kRkklL~YLrk~d~~~Y~~li~~   81 (84)
T d1kuqa_           2 KEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRALIEK   81 (84)
T ss_dssp             TTHHHHHHHHHCSSTTCCSSHHHHHHHHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred             cHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            346789999999999999999999999999999999999  999999999999999999999999999999999999999


Q ss_pred             cCC
Q 013758          425 LGL  427 (437)
Q Consensus       425 LGL  427 (437)
                      |||
T Consensus        82 LgL   84 (84)
T d1kuqa_          82 LGI   84 (84)
T ss_dssp             TCC
T ss_pred             cCC
Confidence            997

>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=7.2e-32  Score=220.08  Aligned_cols=81  Identities=49%  Similarity=0.742  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhhh--CCCCchhhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Q 013758          347 KIELAKVREEFKMSESDCGSARVQIAQLTTKIKHLSSAL--HKKDKHSRKGLQAMVQRRKRLLKYLRRTDWDSYCFVLSK  424 (437)
Q Consensus       347 K~~kq~iI~kFqrhe~DTGS~EVQIAiLT~RI~~LteHL--nkKD~~SKRgL~kLV~KRRKLLKYLRrkD~erY~~lI~k  424 (437)
                      +.+++++|++|++|+.||||+|||||+||+||++|++||  ||||++++|||++||++|+|||+||+++|+++|.+||++
T Consensus         3 ~~~K~~~i~~~~~~~~DtGS~evQiA~lT~rI~~L~~Hlk~~kkD~~srrgL~~lv~~RrklL~YLrk~d~~~Y~~~i~~   82 (85)
T d1a32a_           3 QERKREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKDVARYREIVEK   82 (85)
T ss_dssp             HHHHHHHHHHTCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCCHHHHHHhhHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            567789999999999999999999999999999999999  999999999999999999999999999999999999999


Q ss_pred             cCC
Q 013758          425 LGL  427 (437)
Q Consensus       425 LGL  427 (437)
                      |||
T Consensus        83 Lgl   85 (85)
T d1a32a_          83 LGL   85 (85)
T ss_dssp             HTC
T ss_pred             cCC
Confidence            997