Citrus Sinensis ID: 013776

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430------
MSDSKLFVFGSFTEEETRSWLQSQSSGSVKKPVSSRRAEKPAEDKELQFGSLNFGTESSLVGTTDEPNGKSVVDGPVVFQPSTLLKKDDKVKSVGASNDHDLGAVGCPKENGHIKNSTNGPALSNGVNHLKADGIDFSSFHQNAGGHANPSPISKFHVLCDGNIDGRDQNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNVQ
cccccEEEEEccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccHHHHccccHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccccccEEEccccccccccccccEEEccEEEcccccccEEEcccccEEEEccccccccHHHHHHHcccccEEcccccccccccc
ccccEEEEEcccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccHHHcccEEEccccccccHHHHHHHHHHHcHHccccccccccHHHHHHHHHHHHHcHHHHHHHcccccccccccccccccHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHccEEEEEEEccccEEEEEcccEEEcccccccccccHHHHHHHHHcHccccccccccccEcc
msdsklfvfgsfteeetrswlqsqssgsvkkpvssrraekpaedkelqfgslnfgtesslvgttdepngksvvdgpvvfqpstllkkddkvksvgasndhdlgavgcpkenghiknstngpalsngvnhlkadgidfssfhqnagghanpspiskfhvlcdgnidgrdqnaaacnssisgskevpmkainepvksvkdllprglinsgnlCFLNATLQALMSCSPFVQLLQELRtrdipkagyptLTAFVGfvsdfdtpsggsskkknisvldigrpfspsMFEAVLKNftpdvpnsisgrprqEDAQEFLSFIMDQMHDELLKLqgestsingaNTALVSLaeedewetvgpknksavtrtqsflpsalsdifGGQLKSVVKAQgnkasatvqPFLLLHLDIYSEAVHTIEDALRLfsapenlegyrtsstgnvq
MSDSKLFVFGsfteeetrswlqsqssgsvkkpvssrraekpaedkelqfgslnfGTESSLVGttdepngksvvdgpvvfqpstllkkddkvKSVGASNDHDLGAVGCPKENGHIKNSTNGPALSNGVNHLKADGIDFSSFHQNAGGHANPSPISKFHVLCDGNIDGRDQNAAACNSsisgskevpmkaINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSdfdtpsggsskkknisvLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFsapenlegyrtsstgnvq
MSDSKLFVFGSFTEEETRSWLQSQSSGSVKKPVSSRRAEKPAEDKELQFGSLNFGTESSLVGTTDEPNGKSVVDGPVVFQPSTLLKKDDKVKSVGASNDHDLGAVGCPKENGHIKNSTNGPALSNGVNHLKADGIDFSSFHQNAGGHANPSPISKFHVLCDGNIDGRDQNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNVQ
*******V*************************************************************************************************************************************************SKFHVLCDGNI******************************SVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDF**************VLDIG******MFEAVLK*********************FLSFIMDQMHDELL**************ALV************************FLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFS*****************
***SKLF*FGSF********************************************************************************************************************************************************************************************PRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG********SVLDIGRPFSPSMFEAVLKNFTPDVPN*IS**PRQEDAQEFLSFIMDQMHDELLK**************************VGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNV*
MSDSKLFVFGSFT*******************************KELQFGSLNFGTESSLVGTTDEPNGKSVVDGPVVFQPSTLLKKDDKVKSVGASNDHDLGAVGCPKENGHIKNSTNGPALSNGVNHLKADGIDFSSFHQNAGGHANPSPISKFHVLCDGNIDGRDQNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFD********KKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAE************SAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG**********
***SKLFV**SFTEE*TRSWL********************************************************************************************************************************************************************************DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGE*********ALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTG***
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MSDSKLFVFGSFTEEETRSWLQSQSSGSVKKPVSSRRAEKPAEDKELQFGSLNFGTESSLVGTTDEPNGKSVVDGPVVFQPSTLLKKDDKVKSVGASNDHDLGAVGCPKENGHIKNSTNGPALSNGVNHLKADGIDFSSFHQNAGGHANPSPISKFHVLCDGNIDGRDQNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNVQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query436 2.2.26 [Sep-21-2011]
Q9FPS3 551 Ubiquitin carboxyl-termin yes no 0.951 0.753 0.523 1e-108
Q7ZXR7 805 Ubiquitin carboxyl-termin N/A no 0.557 0.301 0.372 9e-44
Q2NL57 791 Ubiquitin carboxyl-termin N/A no 0.555 0.305 0.370 2e-43
Q6DIJ4 805 Ubiquitin carboxyl-termin yes no 0.557 0.301 0.368 8e-43
Q5ZJN4 785 Ubiquitin carboxyl-termin yes no 0.557 0.309 0.370 6e-42
Q3KR59 794 Ubiquitin carboxyl-termin yes no 0.550 0.302 0.376 3e-40
A5PJS6 800 Ubiquitin carboxyl-termin yes no 0.550 0.3 0.361 2e-39
P52479 792 Ubiquitin carboxyl-termin yes no 0.550 0.303 0.372 4e-39
Q14694 798 Ubiquitin carboxyl-termin yes no 0.550 0.300 0.357 1e-38
O94269 512 Probable ubiquitin carbox yes no 0.497 0.423 0.315 3e-26
>sp|Q9FPS3|UBP24_ARATH Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabidopsis thaliana GN=UBP24 PE=1 SV=1 Back     alignment and function desciption
 Score =  392 bits (1007), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 234/447 (52%), Positives = 295/447 (65%), Gaps = 32/447 (7%)

Query: 1   MSDSKLFVFGSFTEEETRSWLQSQSSGSVKKPVSSRRAEKPAEDKELQFGSLNFGTESSL 60
           MS+ K+FVFGSFTE ETRS+ +       +KP    +  K      +QFGSLN   E+S 
Sbjct: 1   MSEKKVFVFGSFTEHETRSFFE-------QKPTKDPQNSKDKCVGSIQFGSLNLAAENSS 53

Query: 61  VGTTDEPNGKSVVDGPVVFQPSTLLKKDDKVKSVGASNDHDL-----GAVGCPK---ENG 112
           V T  E   K   DG V    S       +  S   +ND D       ++  P+   +NG
Sbjct: 54  VNTNGELK-KGEADGTVKSAGSQERLDASRPASSDKNNDSDAKLPRKNSLRVPEHVVQNG 112

Query: 113 HIKN-STNGPALSNGVNHLKADGIDFSSFHQNAGGHANP---SPISKFHVLCDGNIDGRD 168
            IK  S +  +L+NGV  +K D I   +    + G ++P   +  SKF  L     D  D
Sbjct: 113 IIKEISESNKSLNNGV-AVKTDPIGLDNLSM-SDGESDPVYKASSSKFQAL-----DNED 165

Query: 169 QNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQ 228
            ++ + + SI   K   +K   E V  VKD  PRGLIN+GNLCFLNATLQAL+SCSPFVQ
Sbjct: 166 FSSDSSSGSIQRKKN--LKVPTESVPPVKDFTPRGLINAGNLCFLNATLQALLSCSPFVQ 223

Query: 229 LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLK 288
           LLQ+++ +DIPKA  PTL AF  F+S+ D PS  SS + N++V++ GRPF P+MFE VL+
Sbjct: 224 LLQKIQLQDIPKADSPTLAAFSEFISELDVPSS-SSIRNNVTVVEAGRPFRPAMFEGVLR 282

Query: 289 NFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEED-- 346
           NFTPDV N++SGRPRQEDAQEFLSFIMDQMHDELLKL+ +S  +  + ++++S A +D  
Sbjct: 283 NFTPDVLNNMSGRPRQEDAQEFLSFIMDQMHDELLKLKEQSPKVTASKSSVISSANDDGD 342

Query: 347 EWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSE 406
           EWETVGPKNKSAVTRTQSF+PS LS+IFGGQLKSVVKA+G KASATVQP+LLLHLDI+ +
Sbjct: 343 EWETVGPKNKSAVTRTQSFVPSELSEIFGGQLKSVVKAKGTKASATVQPYLLLHLDIHPD 402

Query: 407 AVHTIEDALRLFSAPENLEGYRTSSTG 433
            V  IEDAL LFSA E+LEGYR S TG
Sbjct: 403 GVQGIEDALHLFSAQEDLEGYRASVTG 429
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|Q7ZXR7|UB10B_XENLA Ubiquitin carboxyl-terminal hydrolase 10-B OS=Xenopus laevis GN=usp10-b PE=2 SV=1 Back     alignment and function description
>sp|Q2NL57|UB10A_XENLA Ubiquitin carboxyl-terminal hydrolase 10-A OS=Xenopus laevis GN=usp10-a PE=2 SV=1 Back     alignment and function description
>sp|Q6DIJ4|UBP10_XENTR Ubiquitin carboxyl-terminal hydrolase 10 OS=Xenopus tropicalis GN=usp10 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZJN4|UBP10_CHICK Ubiquitin carboxyl-terminal hydrolase 10 OS=Gallus gallus GN=USP10 PE=2 SV=1 Back     alignment and function description
>sp|Q3KR59|UBP10_RAT Ubiquitin carboxyl-terminal hydrolase 10 OS=Rattus norvegicus GN=Usp10 PE=2 SV=1 Back     alignment and function description
>sp|A5PJS6|UBP10_BOVIN Ubiquitin carboxyl-terminal hydrolase 10 OS=Bos taurus GN=USP10 PE=2 SV=1 Back     alignment and function description
>sp|P52479|UBP10_MOUSE Ubiquitin carboxyl-terminal hydrolase 10 OS=Mus musculus GN=Usp10 PE=1 SV=3 Back     alignment and function description
>sp|Q14694|UBP10_HUMAN Ubiquitin carboxyl-terminal hydrolase 10 OS=Homo sapiens GN=USP10 PE=1 SV=2 Back     alignment and function description
>sp|O94269|UBP3_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubp3 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query436
225449917 553 PREDICTED: ubiquitin carboxyl-terminal h 0.965 0.761 0.617 1e-137
255544103 605 conserved hypothetical protein [Ricinus 0.899 0.647 0.559 1e-118
356542965530 PREDICTED: ubiquitin carboxyl-terminal h 0.910 0.749 0.548 1e-115
356531617532 PREDICTED: ubiquitin carboxyl-terminal h 0.915 0.75 0.551 1e-114
449507688 542 PREDICTED: ubiquitin carboxyl-terminal h 0.940 0.756 0.519 1e-110
357450917532 Ubiquitin carboxyl-terminal hydrolase [M 0.942 0.772 0.543 1e-110
297798878 550 ubiquitin-specific protease 24 [Arabidop 0.951 0.754 0.526 1e-107
18417689 551 ubiquitin carboxyl-terminal hydrolase 24 0.951 0.753 0.523 1e-106
222423693 551 AT4G30890 [Arabidopsis thaliana] 0.951 0.753 0.523 1e-106
2980777463 putative protein [Arabidopsis thaliana] 0.956 0.900 0.5 1e-102
>gi|225449917|ref|XP_002268974.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Vitis vinifera] gi|296081305|emb|CBI17749.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 271/439 (61%), Positives = 320/439 (72%), Gaps = 18/439 (4%)

Query: 1   MSDSKLFVFGSFTEEETRSWLQSQSSGSVKKPVSSRRAEKPAEDKELQFGSLNFGTESSL 60
           MSDSKL +FGSFTE+ETRS L+          + S  AEKPA  KELQFGS++F T  +L
Sbjct: 4   MSDSKLLLFGSFTEDETRSLLR----------LPSGNAEKPAAKKELQFGSVDFVTGRAL 53

Query: 61  VGTTDEPNGKS-VVDGPVVFQPSTLLKKDDKVKSVGASNDHDLGAVGCPKENGHIKNSTN 119
               +E   ++    GP+ F  S LLKKDD+ KSV   N     A G PKENG + + T+
Sbjct: 54  ASVGNELCRQADSSKGPIDFCSSNLLKKDDETKSVDGVNKLSSEAAGTPKENGGVHDFTH 113

Query: 120 GPALSNGV-NHLKADGIDFSSF--HQNAGGHANPSPISKFHVLCDGNIDGRDQNAAACNS 176
              L NGV N L  D  +  S    QN   H N     + HV+ +     RD N    +S
Sbjct: 114 SSPLGNGVVNELNPDRFNLDSLCLSQNKE-HLNQFQSLESHVVEEECSKERDLNGTIDDS 172

Query: 177 S--ISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELR 234
           S  +   KE+ +KA N P  +VK+LLPRGLINSGNLCFLNATLQAL+SC+PF+QLLQELR
Sbjct: 173 STFVPLKKEI-LKAPNGPAPAVKNLLPRGLINSGNLCFLNATLQALLSCTPFIQLLQELR 231

Query: 235 TRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDV 294
            RDIPK GYPTLTAF  FVS+FD P+  S KKK+++ ++ GRPFSP+MFE VLKNFTPDV
Sbjct: 232 IRDIPKVGYPTLTAFAEFVSEFDMPTDLSLKKKDLNGVETGRPFSPAMFEGVLKNFTPDV 291

Query: 295 PNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPK 354
           PN ISGRPRQEDAQEFLSF+MDQMHDELLKL+G  +++NG  ++LVS AE+DEWETVGPK
Sbjct: 292 PNKISGRPRQEDAQEFLSFVMDQMHDELLKLEGFFSNLNGGKSSLVSSAEDDEWETVGPK 351

Query: 355 NKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDA 414
           NKSAVTRTQSF+PS LS IFGGQL+SVVKA+GNKASATVQPFLLLHLDI  EA++TIEDA
Sbjct: 352 NKSAVTRTQSFVPSELSKIFGGQLRSVVKARGNKASATVQPFLLLHLDILPEAIYTIEDA 411

Query: 415 LRLFSAPENLEGYRTSSTG 433
           LRLFSAPE LEGYRTS TG
Sbjct: 412 LRLFSAPETLEGYRTSGTG 430

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255544103|ref|XP_002513114.1| conserved hypothetical protein [Ricinus communis] gi|223548125|gb|EEF49617.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356542965|ref|XP_003539934.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Glycine max] Back     alignment and taxonomy information
>gi|356531617|ref|XP_003534373.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Glycine max] Back     alignment and taxonomy information
>gi|449507688|ref|XP_004163102.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357450917|ref|XP_003595735.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355484783|gb|AES65986.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297798878|ref|XP_002867323.1| ubiquitin-specific protease 24 [Arabidopsis lyrata subsp. lyrata] gi|297313159|gb|EFH43582.1| ubiquitin-specific protease 24 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18417689|ref|NP_567860.1| ubiquitin carboxyl-terminal hydrolase 24 [Arabidopsis thaliana] gi|42573095|ref|NP_974644.1| ubiquitin carboxyl-terminal hydrolase 24 [Arabidopsis thaliana] gi|334187041|ref|NP_001190875.1| ubiquitin carboxyl-terminal hydrolase 24 [Arabidopsis thaliana] gi|75262799|sp|Q9FPS3.1|UBP24_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 24; AltName: Full=Deubiquitinating enzyme 24; Short=AtUBP24; AltName: Full=Ubiquitin thioesterase 24; AltName: Full=Ubiquitin-specific-processing protease 24 gi|11993488|gb|AAG42762.1|AF302672_1 ubiquitin-specific protease 24 [Arabidopsis thaliana] gi|332660424|gb|AEE85824.1| ubiquitin carboxyl-terminal hydrolase 24 [Arabidopsis thaliana] gi|332660425|gb|AEE85825.1| ubiquitin carboxyl-terminal hydrolase 24 [Arabidopsis thaliana] gi|332660426|gb|AEE85826.1| ubiquitin carboxyl-terminal hydrolase 24 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|222423693|dbj|BAH19813.1| AT4G30890 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|2980777|emb|CAA18204.1| putative protein [Arabidopsis thaliana] gi|7269990|emb|CAB79807.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query436
TAIR|locus:2126649 551 UBP24 "ubiquitin-specific prot 0.951 0.753 0.525 4.7e-103
ASPGD|ASPL0000031525 840 AN5186 [Emericella nidulans (t 0.529 0.275 0.342 5.1e-31
UNIPROTKB|Q2NL57 791 usp10-a "Ubiquitin carboxyl-te 0.442 0.243 0.360 8.5e-31
UNIPROTKB|Q7ZXR7 805 usp10-b "Ubiquitin carboxyl-te 0.442 0.239 0.356 2.7e-29
UNIPROTKB|G4N4M0 1024 MGG_05996 "Ubiquitin C-termina 0.522 0.222 0.342 8.4e-29
DICTYBASE|DDB_G0275021 451 ubpB "putative ubiquitin carbo 0.321 0.310 0.413 1.6e-28
UNIPROTKB|Q6DIJ4 805 usp10 "Ubiquitin carboxyl-term 0.442 0.239 0.351 6.9e-28
UNIPROTKB|F1S5V0 309 USP10 "Uncharacterized protein 0.327 0.462 0.411 1.2e-26
UNIPROTKB|F1NG89716 USP10 "Ubiquitin carboxyl-term 0.371 0.226 0.402 1.5e-26
RGD|1561965 794 Usp10 "ubiquitin specific pept 0.444 0.244 0.357 4e-26
TAIR|locus:2126649 UBP24 "ubiquitin-specific protease 24" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1021 (364.5 bits), Expect = 4.7e-103, P = 4.7e-103
 Identities = 235/447 (52%), Positives = 299/447 (66%)

Query:     1 MSDSKLFVFGSFTEEETRSWLQSQSSGSVKKPVSSRRAEKPAEDKELQFGSLNFGTESSL 60
             MS+ K+FVFGSFTE ETRS+ + + +   K P +S+  +K      +QFGSLN   E+S 
Sbjct:     1 MSEKKVFVFGSFTEHETRSFFEQKPT---KDPQNSK--DKCVGS--IQFGSLNLAAENSS 53

Query:    61 VGTTDEPNGKSVVDGPVVFQPSTLLKKDDKVKSVGASNDHDL-----GAVGCPK---ENG 112
             V T  E   K   DG V    S       +  S   +ND D       ++  P+   +NG
Sbjct:    54 VNTNGELK-KGEADGTVKSAGSQERLDASRPASSDKNNDSDAKLPRKNSLRVPEHVVQNG 112

Query:   113 HIKN-STNGPALSNGVNHLKADGIDFSSFHQNAGGHANP---SPISKFHVLCDGNIDGRD 168
              IK  S +  +L+NGV  +K D I   +   +  G ++P   +  SKF  L     D  D
Sbjct:   113 IIKEISESNKSLNNGVA-VKTDPIGLDNLSMS-DGESDPVYKASSSKFQAL-----DNED 165

Query:   169 QNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQ 228
              ++ + + SI   K   +K   E V  VKD  PRGLIN+GNLCFLNATLQAL+SCSPFVQ
Sbjct:   166 FSSDSSSGSIQRKKN--LKVPTESVPPVKDFTPRGLINAGNLCFLNATLQALLSCSPFVQ 223

Query:   229 LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLK 288
             LLQ+++ +DIPKA  PTL AF  F+S+ D PS  SS + N++V++ GRPF P+MFE VL+
Sbjct:   224 LLQKIQLQDIPKADSPTLAAFSEFISELDVPSS-SSIRNNVTVVEAGRPFRPAMFEGVLR 282

Query:   289 NFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEED-- 346
             NFTPDV N++SGRPRQEDAQEFLSFIMDQMHDELLKL+ +S  +  + ++++S A +D  
Sbjct:   283 NFTPDVLNNMSGRPRQEDAQEFLSFIMDQMHDELLKLKEQSPKVTASKSSVISSANDDGD 342

Query:   347 EWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSE 406
             EWETVGPKNKSAVTRTQSF+PS LS+IFGGQLKSVVKA+G KASATVQP+LLLHLDI+ +
Sbjct:   343 EWETVGPKNKSAVTRTQSFVPSELSEIFGGQLKSVVKAKGTKASATVQPYLLLHLDIHPD 402

Query:   407 AVHTIEDALRLFSAPENLEGYRTSSTG 433
              V  IEDAL LFSA E+LEGYR S TG
Sbjct:   403 GVQGIEDALHLFSAQEDLEGYRASVTG 429
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA
GO:0004843 "ubiquitin-specific protease activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
ASPGD|ASPL0000031525 AN5186 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q2NL57 usp10-a "Ubiquitin carboxyl-terminal hydrolase 10-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q7ZXR7 usp10-b "Ubiquitin carboxyl-terminal hydrolase 10-B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|G4N4M0 MGG_05996 "Ubiquitin C-terminal hydrolase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275021 ubpB "putative ubiquitin carboxyl-terminal hydrolase (UCH)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q6DIJ4 usp10 "Ubiquitin carboxyl-terminal hydrolase 10" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|F1S5V0 USP10 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NG89 USP10 "Ubiquitin carboxyl-terminal hydrolase 10" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1561965 Usp10 "ubiquitin specific peptidase 10" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FPS3UBP24_ARATH3, ., 4, ., 1, 9, ., 1, 20.52340.95180.7531yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.921
3rd Layer3.4.19.120.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028642001
RecName- Full=Ubiquitin carboxyl-terminal hydrolase; EC=3.1.2.15; (498 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query436
cd02661 304 cd02661, Peptidase_C19E, A subfamily of Peptidase 1e-21
pfam00443 313 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol 1e-21
COG5533 415 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos 1e-18
cd02257 255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 3e-13
COG5560 823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 5e-12
cd02660 328 cd02660, Peptidase_C19D, A subfamily of Peptidase 9e-10
cd02674 230 cd02674, Peptidase_C19R, A subfamily of peptidase 7e-09
cd02658311 cd02658, Peptidase_C19B, A subfamily of Peptidase 5e-08
cd02657305 cd02657, Peptidase_C19A, A subfamily of Peptidase 4e-07
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 3e-05
COG5207 749 COG5207, UBP14, Isopeptidase T [Posttranslational 1e-04
cd02664 327 cd02664, Peptidase_C19H, A subfamily of Peptidase 4e-04
cd02667 279 cd02667, Peptidase_C19K, A subfamily of Peptidase 9e-04
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 0.001
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 Back     alignment and domain information 
 Score = 94.3 bits (235), Expect = 1e-21
 Identities = 63/229 (27%), Positives = 82/229 (35%), Gaps = 53/229 (23%)

Query: 201 PRGLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSDFDTP 259
             GL N GN CFLN+ LQ L    P    LL    ++D    G+  + A    V      
Sbjct: 1   GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHV------ 54

Query: 260 SGGSSKKKNISVLDIGRPFSPSM-FEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
                       L    P S    F + LK  +           RQEDA EFL +++D M
Sbjct: 55  ---------ERALASSGPGSAPRIFSSNLKQISKHF-----RIGRQEDAHEFLRYLLDAM 100

Query: 319 HDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 378
                               L    +    +              S   + +  IFGG L
Sbjct: 101 Q----------------KACLDRFKKLKAVDPS------------SQETTLVQQIFGGYL 132

Query: 379 KSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG 426
           +S VK       S T  PFL L LDI      ++EDAL  F+ PE L+G
Sbjct: 133 RSQVKCLNCKHVSNTYDPFLDLSLDIKG--ADSLEDALEQFTKPEQLDG 179

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 436
KOG1865 545 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
cd02660 328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 100.0
cd02663 300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 100.0
COG5560 823 UBP12 Ubiquitin C-terminal hydrolase [Posttranslat 100.0
cd02658 311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 100.0
COG5533 415 UBP5 Ubiquitin C-terminal hydrolase [Posttranslati 99.98
cd02671 332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 99.98
cd02668 324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 99.98
cd02661 304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 99.97
cd02657 305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 99.97
cd02664 327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 99.96
cd02659 334 peptidase_C19C A subfamily of Peptidase C19. Pepti 99.96
cd02669 440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 99.96
cd02667 279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 99.96
cd02666 343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 99.95
KOG1868 653 consensus Ubiquitin C-terminal hydrolase [Posttran 99.94
cd02662 240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 99.94
KOG0944 763 consensus Ubiquitin-specific protease UBP14 [Postt 99.91
COG5207 749 UBP14 Isopeptidase T [Posttranslational modificati 99.86
cd02674 230 Peptidase_C19R A subfamily of peptidase C19. Pepti 99.85
cd02673 245 Peptidase_C19Q A subfamily of Peptidase C19. Pepti 99.85
KOG1866 944 consensus Ubiquitin carboxyl-terminal hydrolase [P 99.85
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 99.84
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 99.84
KOG1870 842 consensus Ubiquitin C-terminal hydrolase [Posttran 99.83
PF13423 295 UCH_1: Ubiquitin carboxyl-terminal hydrolase 99.83
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 99.83
KOG1873 877 consensus Ubiquitin-specific protease [Posttransla 99.82
KOG1871 420 consensus Ubiquitin-specific protease [Posttransla 99.81
KOG1867 492 consensus Ubiquitin-specific protease [Posttransla 99.81
cd02665 228 Peptidase_C19I A subfamily of Peptidase C19. Pepti 99.77
cd02257 255 Peptidase_C19 Peptidase C19 contains ubiquitinyl h 99.75
cd02672 268 Peptidase_C19P A subfamily of Peptidase C19. Pepti 99.67
KOG4598 1203 consensus Putative ubiquitin-specific protease [Po 99.61
KOG1864 587 consensus Ubiquitin-specific protease [Posttransla 99.47
KOG2026 442 consensus Spindle pole body protein - Sad1p [Cytos 99.43
KOG1871420 consensus Ubiquitin-specific protease [Posttransla 99.31
KOG1872 473 consensus Ubiquitin-specific protease [Posttransla 99.14
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 98.94
cd02670 241 Peptidase_C19N A subfamily of Peptidase C19. Pepti 98.22
KOG1864 587 consensus Ubiquitin-specific protease [Posttransla 97.42
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 85.77
PF1247833 DUF3697: Ubiquitin-associated protein 2 ; InterPro 81.31
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=6.2e-35  Score=299.52  Aligned_cols=185  Identities=34%  Similarity=0.521  Sum_probs=158.1

Q ss_pred             ccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhc-cCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCc
Q 013776          199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRT-RDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRP  277 (436)
Q Consensus       199 ~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~-~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~  277 (436)
                      ..++||.|+|||||+|||||||.+||||++||++..+ +.|....+|++|+|+..+....              .+.+.+
T Consensus       106 ~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~--------------~~~g~p  171 (545)
T KOG1865|consen  106 AVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRAL--------------HNPGHP  171 (545)
T ss_pred             cCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHh--------------cCCCCc
Confidence            4579999999999999999999999999999998754 4556678999999999998654              234669


Q ss_pred             cChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCc
Q 013776          278 FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKS  357 (436)
Q Consensus       278 isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S  357 (436)
                      |+|..|+..|+.+..+|     ..++|+||||||++++|.|+.-+..-.....                           
T Consensus       172 isP~~i~s~L~~I~~~f-----~~grQEDAHEFLr~~vd~mqk~cL~g~~~~~---------------------------  219 (545)
T KOG1865|consen  172 ISPSQILSNLRNISAHF-----GRGRQEDAHEFLRFTVDAMQKACLPGHKQVD---------------------------  219 (545)
T ss_pred             cChHHHHHhhhhhcccc-----cCCchhhHHHHHHHHHHHHHHhhcCCCccCC---------------------------
Confidence            99999999999997776     7899999999999999999998862111100                           


Q ss_pred             ccccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCCCCCCHHHHHHhccCccccCc---cccCCCC
Q 013776          358 AVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTG  433 (436)
Q Consensus       358 ~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~~~~sLed~L~~f~~~E~Leg---y~C~kC~  433 (436)
                        .  ..-..+.|.++|+|-++++|+|. |+++|.++|++++|+|.|.  ...+|++||++|+++|.|+|   |+|++|+
T Consensus       220 --~--~sq~ttlv~~iFGG~LrS~vkC~~C~~vS~tyE~~~dltvei~--d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck  293 (545)
T KOG1865|consen  220 --P--RSQDTTLVHQIFGGYLRSQIKCLHCKGVSDTYEPYLDLTLEIQ--DASSLQQALEQFTKPEKLDGENAYHCGRCK  293 (545)
T ss_pred             --c--ccccceehhhhhccchhhceecccCCCcccccccccceEEEec--cchhHHHHHHHhhhHHhhCCccccccchhh
Confidence              0  01113678999999999999997 9999999999999999994  78999999999999999987   9999999


Q ss_pred             CC
Q 013776          434 NV  435 (436)
Q Consensus       434 k~  435 (436)
                      ++
T Consensus       294 ~~  295 (545)
T KOG1865|consen  294 QK  295 (545)
T ss_pred             hh
Confidence            86

>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information
>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02674 Peptidase_C19R A subfamily of peptidase C19 Back     alignment and domain information
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02665 Peptidase_C19I A subfamily of Peptidase C19 Back     alignment and domain information
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>cd02672 Peptidase_C19P A subfamily of Peptidase C19 Back     alignment and domain information
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] Back     alignment and domain information
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>cd02670 Peptidase_C19N A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF12478 DUF3697: Ubiquitin-associated protein 2 ; InterPro: IPR022166 This domain family is found in eukaryotes, and is approximately 30 amino acids in length Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query436
3mtn_A 373 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 3e-11
2y5b_A 370 Structure Of Usp21 In Complex With Linear Diubiquit 4e-11
3i3t_A 355 Crystal Structure Of Covalent Ubiquitin-usp21 Compl 4e-11
2ibi_A 374 Covalent Ubiquitin-Usp2 Complex Length = 374 2e-10
3v6c_A 367 Crystal Structure Of Usp2 In Complex With Mutated U 2e-10
2hd5_A 359 Usp2 In Complex With Ubiquitin Length = 359 3e-10
3n3k_A 396 The Catalytic Domain Of Usp8 In Complex With A Usp8 3e-09
3nhe_A 348 High Resolution Structure (1.26a) Of Usp2a In Compl 7e-09
2gfo_A 396 Structure Of The Catalytic Domain Of Human Ubiquiti 8e-08
2y6e_A 367 Ubiquitin Specific Protease 4 Is Inhibited By Its U 1e-06
4fip_A 476 Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- 8e-04
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 Back     alignment and structure 
Iteration: 1

 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 109/252 (43%), Gaps = 49/252 (19%)
Query: 199 LLPRG------LINSGNLCFLNATLQALMSCSPF--VQLLQELRTRDIPKAGYPT-LT-A 248
           L+PRG      L N GN CFLNA LQ L S  P     L ++ R +++P  G    LT A
Sbjct: 14  LVPRGSSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFR-QEVPGGGRAQELTEA 72
Query: 249 FVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQ 308
           F   +     P             D     +P+ F AV + + P    S SG   Q+DAQ
Sbjct: 73  FADVIGALWHP-------------DSCEAVNPTRFRAVFQKYVP----SFSGYS-QQDAQ 114
Query: 309 EFLSFIMDQMHDELLKLQGESTSINGANTALVS-------LAEEDEWETVGPKN---KSA 358
           EFL  +M+++H E+ + +G       AN  + S       L EE E       N   K  
Sbjct: 115 EFLKLLMERLHLEINR-RGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRY 173
Query: 359 VTRTQSFLPSALSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI----YSEAVHTIED 413
           + R      S + D+F GQLKS +K Q     S T + F  L L I    ++    ++ D
Sbjct: 174 LERED----SKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRD 229
Query: 414 ALRLFSAPENLE 425
              LF+  E LE
Sbjct: 230 CFNLFTKEEELE 241
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 Back     alignment and structure
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 Back     alignment and structure
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 Back     alignment and structure
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 Back     alignment and structure
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 Back     alignment and structure
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 Back     alignment and structure
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 Back     alignment and structure
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 Back     alignment and structure
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 Back     alignment and structure
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query436
3i3t_A 355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 2e-34
3nhe_A 348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 4e-31
2gfo_A 396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 2e-30
3mhs_A 476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 3e-29
2ayn_A 404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 6e-28
2y6e_A 367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 9e-26
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 8e-18
1nb8_A 353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 4e-16
2f1z_A 522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 1e-14
1vjv_A 415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
 Score =  130 bits (329), Expect = 2e-34
 Identities = 62/239 (25%), Positives = 92/239 (38%), Gaps = 31/239 (12%)

Query: 202 RGLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPT--LTAFVGFVSDFDT 258
            GL N GN CFLNA LQ L S  P     L+    +++P  G       AF   +     
Sbjct: 4   VGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWH 63

Query: 259 PSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
           P    +              +P+ F AV + + P           Q+DAQEFL  +M+++
Sbjct: 64  PDSCEA-------------VNPTRFRAVFQKYVPSFSGY-----SQQDAQEFLKLLMERL 105

Query: 319 HDELLKLQ--GESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFL---PSALSDI 373
           H E+ +          NG   +          E     +  A    + +L    S + D+
Sbjct: 106 HLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDL 165

Query: 374 FGGQLKSVVK-AQGNKASATVQPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEGY 427
           F GQLKS +K       S T + F  L L I    ++    ++ D   LF+  E LE  
Sbjct: 166 FVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESE 224
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query436
2y6e_A 367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 100.0
2gfo_A 396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 100.0
3nhe_A 348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 100.0
3i3t_A 355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 100.0
2ayn_A 404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 100.0
1nb8_A 353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 100.0
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 99.97
3mhs_A 476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 99.97
1vjv_A 415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 99.97
2f1z_A 522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 99.97
2vhf_A 374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 99.57
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=5.6e-39  Score=324.86  Aligned_cols=207  Identities=24%  Similarity=0.403  Sum_probs=170.4

Q ss_pred             ccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhcc------CCCCCCCcHHHHHHHHHHhcCCCCCCCCcccccccc
Q 013776          199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR------DIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL  272 (436)
Q Consensus       199 ~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~------~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~  272 (436)
                      .+.+||.|+||||||||+||||+++|+|+++|+.....      .+.....+++++|+.|+..||..             
T Consensus         6 ~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~-------------   72 (367)
T 2y6e_A            6 PGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSG-------------   72 (367)
T ss_dssp             TTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSS-------------
T ss_pred             CCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcC-------------
Confidence            35699999999999999999999999999999875322      12233467999999999999843             


Q ss_pred             CCCCccChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCC-ccCCCcccccchhhhhhHhhh
Q 013776          273 DIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGEST-SINGANTALVSLAEEDEWETV  351 (436)
Q Consensus       273 ~~~~~isP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~-~~~~~~~~~~~~~~~~~w~~~  351 (436)
                       ....++|..|+.++++..+.|     .+++||||||||++|||.||+++.+..+++. ......+.++...+.+.|..+
T Consensus        73 -~~~~i~P~~~~~~l~~~~~~f-----~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~  146 (367)
T 2y6e_A           73 -RDAHVAPRMFKTQVGRFAPQF-----SGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENH  146 (367)
T ss_dssp             -SCSEECCHHHHHHHHHHCGGG-----CSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHH
T ss_pred             -CCCCcCHHHHHHHHHHhhhhc-----CCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHH
Confidence             256899999999999987765     7999999999999999999999987665543 222333444556678889887


Q ss_pred             CCCCCcccccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCC-----------------CCCCHHH
Q 013776          352 GPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSE-----------------AVHTIED  413 (436)
Q Consensus       352 ~~~n~S~~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~-----------------~~~sLed  413 (436)
                      ..++.           ++|.++|+|+++++++|. |++++.++|+|++|+|+||..                 ...+|++
T Consensus       147 ~~~~~-----------s~i~~~F~G~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~  215 (367)
T 2y6e_A          147 RLRND-----------SVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRD  215 (367)
T ss_dssp             HHHCC-----------SHHHHHHCEEEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHH
T ss_pred             HHhcC-----------CccccccCcEEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHH
Confidence            65544           557899999999999996 999999999999999999863                 2469999


Q ss_pred             HHHhccCccccCc---cccCCCCCC
Q 013776          414 ALRLFSAPENLEG---YRTSSTGNV  435 (436)
Q Consensus       414 ~L~~f~~~E~Leg---y~C~kC~k~  435 (436)
                      ||+.|+++|.|++   |+|++|++.
T Consensus       216 ~L~~f~~~E~l~~~~~~~C~~C~~~  240 (367)
T 2y6e_A          216 CIELFTTMETLGEHDPWYCPNCKKH  240 (367)
T ss_dssp             HHHHHTSCEECCC-CCEEETTTTEE
T ss_pred             HHHHhcccccCCCCCCccCCCCCCC
Confidence            9999999999987   899999864
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Back     alignment and structure
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 436
d2hd5a1 336 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy 7e-19
d2ayna1 383 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy 2e-18
d2gfoa1 348 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h 2e-17
d1vjva_ 397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 2e-12
d1nbfa_ 347 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 1e-07
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.2 bits (209), Expect = 7e-19
 Identities = 61/233 (26%), Positives = 88/233 (37%), Gaps = 35/233 (15%)

Query: 202 RGLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDI---PKAGYPTLTAFVGFVSDFD 257
            GL N GN CF+N+ LQ L +        LQ L  RD+     A    +  F   +    
Sbjct: 4   AGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIW 63

Query: 258 TPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQ 317
           T S                  SPS F+  ++ + P           Q+DAQEFL F++D 
Sbjct: 64  TSSPND-------------VVSPSEFKTQIQRYAPRFVGY-----NQQDAQEFLRFLLDG 105

Query: 318 MHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQ 377
           +H+E+          N       S  E  +      K +    +      S + D+F GQ
Sbjct: 106 LHNEV----------NRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQ 155

Query: 378 LKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVH--TIEDALRLFSAPENLEGY 427
           LKS +        S    PF  L L I        T+ D +RLF+  + L+G 
Sbjct: 156 LKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGD 208
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query436
d1nbfa_ 347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 99.96
d2ayna1 383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 99.95
d2gfoa1 348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 99.95
d2hd5a1 336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 99.94
d1vjva_ 397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 99.88
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.4e-29  Score=249.39  Aligned_cols=171  Identities=18%  Similarity=0.278  Sum_probs=141.2

Q ss_pred             ccCcccccCCCcchhHHHHHHHhCChhHHHHHHhhhccCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCcc
Q 013776          199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPF  278 (436)
Q Consensus       199 ~~p~GL~N~GNTCYmNSvLQ~L~~tp~f~~~Ll~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~i  278 (436)
                      ++.+||.|+||||||||+||+|+++|+|+++++...... .....++.++|+.+|..|+               ....++
T Consensus         4 ~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~~-~~~~~~~~~~l~~lf~~l~---------------~~~~~~   67 (347)
T d1nbfa_           4 TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG-DDSSKSVPLALQRVFYELQ---------------HSDKPV   67 (347)
T ss_dssp             SSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCTT-CCTTTCHHHHHHHHHHHHH---------------HCSSCB
T ss_pred             CCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCccC-CcccchHHHHHHHHHHHHh---------------cCCCCc
Confidence            456899999999999999999999999999998765443 2335689999999999987               335678


Q ss_pred             ChHHHHHHHHhhCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhhhCCCCCcc
Q 013776          279 SPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSA  358 (436)
Q Consensus       279 sP~~~~~~l~~~~p~f~n~~f~g~~QqDA~EFL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~S~  358 (436)
                      .|..+...+..       ..|..+.|||||||+.+||+.|++++.....                               
T Consensus        68 ~~~~~~~~~~~-------~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~~-------------------------------  109 (347)
T d1nbfa_          68 GTKKLTKSFGW-------ETLDSFMQHDVQELCRVLLDNVENKMKGTCV-------------------------------  109 (347)
T ss_dssp             CCHHHHHHTTC-------CGGGGGSCBCHHHHHHHHHHHHHHHHTTSTT-------------------------------
T ss_pred             ChHHHHHhhch-------hhcchHHHHHHHHHHHHHHHHHHHHHhhccc-------------------------------
Confidence            88888776642       2247889999999999999999998853221                               


Q ss_pred             cccccccCCCccccCceEEEEEEEEeC-CCCeeeeeecceeEEEecCCCCCCCHHHHHHhccCccccCc---cccCCCC
Q 013776          359 VTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTG  433 (436)
Q Consensus       359 ~~r~~~~~~s~I~~lF~G~l~s~I~C~-C~~~S~~~E~F~~LsL~Ip~~~~~sLed~L~~f~~~E~Leg---y~C~kC~  433 (436)
                              .++|.++|+|.+.+.++|. |++.+.+.|+|++|+|+||.  ..+++++|..++.+|.+++   +.|..|+
T Consensus       110 --------~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~L~i~~--~~~~~~~l~~~~~~e~l~~~~~~~~~~~~  178 (347)
T d1nbfa_         110 --------EGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKG--KKNIFESFVDYVAVEQLDGDNKYDAGEHG  178 (347)
T ss_dssp             --------TTHHHHHHCEEEEEEEEESSSCCEEEEEEEESSEEEECTT--CCBHHHHHHHHTCCEEECGGGCEECSTTC
T ss_pred             --------cccccceeceEEEEeEEeCCccceeeeecccccccccccc--ccchhhhHHhhcchheeccccccccccCc
Confidence                    2457899999999999996 99999999999999999964  5799999999999999987   3344443
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure