Citrus Sinensis ID: 013782

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430------
MYRATVSRLGSLKGRLGNFQAMRYATSGAAAVRPSSPGFFSWLTGEQSSSLPSLDTPLEGVSFPPSLPDFVEPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPPTEPKSVYIGGDYRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRKI
ccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEcccccEEEEEEEEEccccccccccccHHHHHHHHcccccccccHHHHHHHHHHcccEEEEEccccEEEEEEEEccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccHHHHccccHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHcccccccccccccccccccccEEEcccccccEEEEEEcccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHcccEEEEEEcccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccc
cHHHHHHHHHHHHHHcccccccccccHHHHccccccccHHHHcccccccccccccccccccccccccHHHccccccEEEEcccccEEEEEcccccEEEEEEEEcccHHHcccccccHHHHHHccccccEccEcHHHHHHHHHHcccEEEEEEccccEEEEEEEEHHHHHHHHHHHHHHHHcEcccHHHHHHHcHHHHHHHHHHcccHHHHHHHHHHHHHEccHHHccccccHHHcccccHHHHHHHHHHHccHHHEEEEEEcccHHHHHHHHHHHccccccccccccccccEccccEEEcccccccEEEEEEEccccccccccHHHHHHHHHHHcEEEcccccccccccccHHHHHcccccccEEEEEEEEEEccccEEEEEEEEEcHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccc
MYRATVSRLGSLKGRLGNFQAMRYAtsgaaavrpsspgffswltgeqssslpsldtplegvsfppslpdfvepgkvkvttlengiriasetsvspaasIGLYLdfgsvyetpsscgasnLLEKMAFkstknrshLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELgelhnnpqGLLLEAIHSTgyagalgnpllapesalnrldgTILEEIVAENFTAPRMVLAAsgvdldellpiaepllsdlprlppptepksvyiggdyrqqadspeTHIALAFevpggwlkdkEAIILTVLQVLmggggsfsaggpgkgmhTRLYLRVLNEYQQIQSFSAFNSIFNNTGLfgiyactgsdfvSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRKI
myratvsrlgslkgrlGNFQAMRYATSGAAAVRPSSPGFFSWLTGEQSSSLPSLDTPLEGVSFPPSLPDFVEPGKVKVTTLENGiriasetsvspaaSIGLYLDFGSVYETPSSCGASNLLEKMAFkstknrshlriVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEpllsdlprlppPTEPKSVYIGGDYRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILiatpkqvtqvqlnrakeatksavlmnlesrki
MYRATVSRLGSLKGRLGNFQAMRYATSGAAAVRPSSPGFFSWLTGEQSSSLPSLDTPLEGVSFPPSLPDFVEPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEpllsdlprlpppTEPKSVYIGGDYRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMggggsfsaggpgkgMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRKI
*****************NFQAMRYA*************FFSWL***************************V*PGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLL***************YIGGDY*******ETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQ*********************
**************************************************************************KVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLL****************IGGDYRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAG***KGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRK*
MYRATVSRLGSLKGRLGNFQAMRYATSGAAAVRPSSPGFFSWLTGEQSSSLPSLDTPLEGVSFPPSLPDFVEPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPPTEPKSVYIGGDYRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRKI
****TVSRLGSLKGRLGNFQAMRY***********SPGFFSWLTGEQSSSLPSLDTPLEGVSFPPSLPDFVEPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPPTEPKSVYIGGDYRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLE****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYRATVSRLGSLKGRLGNFQAMRYATSGAAAVRPSSPGFFSWLTGEQSSSLPSLDTPLEGVSFPPSLPDFVEPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPPTEPKSVYIGGDYRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRKI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query436 2.2.26 [Sep-21-2011]
P29677504 Mitochondrial-processing N/A no 0.997 0.863 0.667 1e-166
Q9ZU25503 Probable mitochondrial-pr no no 0.995 0.862 0.639 1e-150
O04308499 Probable mitochondrial-pr no no 0.988 0.863 0.661 1e-145
O75439489 Mitochondrial-processing yes no 0.788 0.703 0.326 1e-42
Q3SZ71490 Mitochondrial-processing yes no 0.788 0.702 0.334 2e-42
P97997474 Mitochondrial-processing N/A no 0.811 0.746 0.333 5e-42
Q5REK3489 Mitochondrial-processing yes no 0.788 0.703 0.323 7e-42
Q9CXT8489 Mitochondrial-processing yes no 0.788 0.703 0.326 2e-41
Q03346489 Mitochondrial-processing yes no 0.788 0.703 0.326 3e-41
Q42290531 Probable mitochondrial-pr no no 0.800 0.657 0.306 1e-39
>sp|P29677|MPPA_SOLTU Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1 Back     alignment and function desciption
 Score =  585 bits (1509), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 291/436 (66%), Positives = 355/436 (81%), Gaps = 1/436 (0%)

Query: 1   MYRATVSRLGSLKGRLGNFQAMRYATSGAAAVRPSSPGFFSWLTGEQSSSLPSLDTPLEG 60
           MYR   SRL SLK R GN    R+++S A A +PS  G FSW+TG+ SSS+  LD PL  
Sbjct: 1   MYRCASSRLSSLKARQGNRVLTRFSSSAAVATKPSG-GLFSWITGDTSSSVTPLDFPLND 59

Query: 61  VSFPPSLPDFVEPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNL 120
           V   P LPD+VEP K ++TTL NG+++ASE SV+PAASIGLY+D GS+YETP+S GA++L
Sbjct: 60  VKLSPPLPDYVEPAKTQITTLANGLKVASEASVNPAASIGLYVDCGSIYETPASYGATHL 119

Query: 121 LEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVR 180
           LE+MAFKST NRSHLRIVRE+EAIGG++ ASASRE M Y++DALKTYVP+MVE+L DCVR
Sbjct: 120 LERMAFKSTLNRSHLRIVREIEAIGGNVTASASREHMIYTYDALKTYVPQMVEMLADCVR 179

Query: 181 NPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDG 240
           NP FLDWEV E+L K+K+E+ E   NPQ LLLEA+HS GYAG  GN L+A E+ +NRL+ 
Sbjct: 180 NPAFLDWEVKEQLEKVKAEISEYSKNPQHLLLEAVHSAGYAGPYGNSLMATEATINRLNS 239

Query: 241 TILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPPTEPKSVYIGGDYRQQ 300
           T+LEE VAEN+TAPRMVLAASGV+ +E L +AEPLLSDLP++    EPK VY+GGDYR Q
Sbjct: 240 TVLEEFVAENYTAPRMVLAASGVEHEEFLKVAEPLLSDLPKVATIEEPKPVYVGGDYRCQ 299

Query: 301 ADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNE 360
           AD+  TH ALAFEVPGGW+ +KE++ LTVLQ+LMGGGGSFSAGGPGKGM++RLYLRVLN+
Sbjct: 300 ADAEMTHFALAFEVPGGWMSEKESMTLTVLQMLMGGGGSFSAGGPGKGMYSRLYLRVLNQ 359

Query: 361 YQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAK 420
           Y QI +FSAF+SI+NNTGLFGI   T SDF  +AVD+ V+ELI +A P +V QVQLNRAK
Sbjct: 360 YPQIHAFSAFSSIYNNTGLFGIQGTTSSDFGPQAVDVAVKELIAVANPSEVDQVQLNRAK 419

Query: 421 EATKSAVLMNLESRKI 436
           +ATKSA+LMNLESR +
Sbjct: 420 QATKSAILMNLESRMV 435
This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. Mediate formation of the complex between cytochromes c and c1.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 1EC: 0EC: .EC: 2EC: .EC: 2
>sp|Q9ZU25|MPPA1_ARATH Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1 Back     alignment and function description
>sp|O04308|MPPA2_ARATH Probable mitochondrial-processing peptidase subunit alpha-2 OS=Arabidopsis thaliana GN=MPPA2 PE=1 SV=1 Back     alignment and function description
>sp|O75439|MPPB_HUMAN Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2 Back     alignment and function description
>sp|Q3SZ71|MPPB_BOVIN Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1 Back     alignment and function description
>sp|P97997|MPPA_BLAEM Mitochondrial-processing peptidase subunit alpha OS=Blastocladiella emersonii PE=3 SV=1 Back     alignment and function description
>sp|Q5REK3|MPPB_PONAB Mitochondrial-processing peptidase subunit beta OS=Pongo abelii GN=PMPCB PE=2 SV=1 Back     alignment and function description
>sp|Q9CXT8|MPPB_MOUSE Mitochondrial-processing peptidase subunit beta OS=Mus musculus GN=Pmpcb PE=2 SV=1 Back     alignment and function description
>sp|Q03346|MPPB_RAT Mitochondrial-processing peptidase subunit beta OS=Rattus norvegicus GN=Pmpcb PE=1 SV=3 Back     alignment and function description
>sp|Q42290|MPPB_ARATH Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query436
449462912505 PREDICTED: mitochondrial-processing pept 1.0 0.863 0.768 0.0
225442426506 PREDICTED: mitochondrial-processing pept 1.0 0.861 0.762 0.0
356526071505 PREDICTED: mitochondrial-processing pept 0.997 0.861 0.752 0.0
255549792492 mitochondrial processing peptidase alpha 0.972 0.861 0.729 1e-180
224059160507 predicted protein [Populus trichocarpa] 1.0 0.859 0.731 1e-180
357513541507 Mitochondrial-processing peptidase subun 1.0 0.859 0.739 1e-179
356522822505 PREDICTED: mitochondrial-processing pept 0.997 0.861 0.745 1e-178
225445041506 PREDICTED: mitochondrial-processing pept 1.0 0.861 0.723 1e-174
356556561491 PREDICTED: mitochondrial-processing pept 0.967 0.859 0.729 1e-174
356547368491 PREDICTED: mitochondrial-processing pept 0.967 0.859 0.727 1e-172
>gi|449462912|ref|XP_004149179.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Cucumis sativus] gi|449489994|ref|XP_004158479.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/436 (76%), Positives = 380/436 (87%)

Query: 1   MYRATVSRLGSLKGRLGNFQAMRYATSGAAAVRPSSPGFFSWLTGEQSSSLPSLDTPLEG 60
           M+R   SRL SLK    N  A R+ATS A A RP+S GFFSWLTGE+SSSLP ++ PL G
Sbjct: 1   MHRIAGSRLRSLKNHAANLGASRFATSSAVAARPTSGGFFSWLTGERSSSLPPMEIPLSG 60

Query: 61  VSFPPSLPDFVEPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNL 120
           ++ PP LPD VE  K K+TTL NG+RIASETS +PAASIG+YLD GS+YETP S GAS+L
Sbjct: 61  ITLPPPLPDQVETSKTKITTLPNGVRIASETSSNPAASIGIYLDCGSIYETPLSSGASHL 120

Query: 121 LEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVR 180
           LE++AFKST NRSHLRIVREVEAIGG+  ASASREQMGY+FDALKTYVPEMVELLVDCVR
Sbjct: 121 LERLAFKSTTNRSHLRIVREVEAIGGNTGASASREQMGYTFDALKTYVPEMVELLVDCVR 180

Query: 181 NPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDG 240
           NPVFLDWE+NEEL+KLK+E+GEL NNPQGLLLEA+HS GY+GAL NPL+APE AL+RLDG
Sbjct: 181 NPVFLDWEINEELQKLKAEIGELANNPQGLLLEAVHSAGYSGALANPLVAPEFALSRLDG 240

Query: 241 TILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPPTEPKSVYIGGDYRQQ 300
           TILEE +AEN+TA RMVLAASGVD +ELL I+EPLLSDLP +P    P+SVY+GGDYR+Q
Sbjct: 241 TILEEFIAENYTASRMVLAASGVDHEELLSISEPLLSDLPNVPGVKVPESVYVGGDYRRQ 300

Query: 301 ADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNE 360
           AD   TH+ALAFEVPGGW K+K+AI+LTVLQ+LMGGGGSFSAGGPGKGMH+RLYLRVLNE
Sbjct: 301 ADCGSTHVALAFEVPGGWHKEKDAIVLTVLQMLMGGGGSFSAGGPGKGMHSRLYLRVLNE 360

Query: 361 YQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAK 420
           YQQIQSFSAFNSIFNNTGLFGIYA TGS+FV+KAVD+   ELI IATP QV+QVQLNRAK
Sbjct: 361 YQQIQSFSAFNSIFNNTGLFGIYASTGSNFVAKAVDIAASELISIATPGQVSQVQLNRAK 420

Query: 421 EATKSAVLMNLESRKI 436
           E+TKSAVLMNLESR I
Sbjct: 421 ESTKSAVLMNLESRMI 436

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225442426|ref|XP_002283426.1| PREDICTED: mitochondrial-processing peptidase subunit alpha [Vitis vinifera] gi|297743169|emb|CBI36036.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356526071|ref|XP_003531643.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|255549792|ref|XP_002515947.1| mitochondrial processing peptidase alpha subunit, putative [Ricinus communis] gi|223544852|gb|EEF46367.1| mitochondrial processing peptidase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224059160|ref|XP_002299745.1| predicted protein [Populus trichocarpa] gi|222847003|gb|EEE84550.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357513541|ref|XP_003627059.1| Mitochondrial-processing peptidase subunit alpha [Medicago truncatula] gi|355521081|gb|AET01535.1| Mitochondrial-processing peptidase subunit alpha [Medicago truncatula] Back     alignment and taxonomy information
>gi|356522822|ref|XP_003530042.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|225445041|ref|XP_002283310.1| PREDICTED: mitochondrial-processing peptidase subunit alpha [Vitis vinifera] gi|297738729|emb|CBI27974.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356556561|ref|XP_003546593.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|356547368|ref|XP_003542085.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query436
TAIR|locus:2088309499 MPPalpha "mitochondrial proces 0.988 0.863 0.608 9.1e-132
TAIR|locus:2034096503 AT1G51980 [Arabidopsis thalian 0.995 0.862 0.591 1.4e-128
ASPGD|ASPL0000062345 570 AN1104 [Emericella nidulans (t 0.463 0.354 0.348 1.7e-46
GENEDB_PFALCIPARUM|PFE1155c534 PFE1155c "mitochondrial proces 0.864 0.705 0.335 1.3e-45
UNIPROTKB|Q8I3N3534 PFE1155c "Mitochondrial proces 0.864 0.705 0.335 1.3e-45
UNIPROTKB|F1P582457 UQCRC2 "Uncharacterized protei 0.811 0.774 0.305 2.6e-40
ZFIN|ZDB-GENE-040718-405460 uqcrc2a "ubiquinol-cytochrome 0.860 0.815 0.296 1.1e-39
UNIPROTKB|F1P3S2471 PMPCB "Uncharacterized protein 0.807 0.747 0.315 1.8e-39
UNIPROTKB|F1PUK2513 PMPCB "Uncharacterized protein 0.917 0.779 0.302 2.3e-39
UNIPROTKB|F1SB55489 PMPCB "Uncharacterized protein 0.814 0.725 0.310 2.9e-39
TAIR|locus:2088309 MPPalpha "mitochondrial processing peptidase alpha subunit" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1292 (459.9 bits), Expect = 9.1e-132, P = 9.1e-132
 Identities = 266/437 (60%), Positives = 314/437 (71%)

Query:     1 MYRATVSRLGSLKGRLG-NFQAMRYATSGAAAVRPSSPGFFSWLTGEQSSSLPSLDTPLE 59
             MYR   SR  +LKG L  NF+A RYA+S A A   SS    SWL+G  SSSLPS++ PL 
Sbjct:     1 MYRTAASRAKALKGILNHNFRASRYASSSAVATSSSSS---SWLSGGYSSSLPSMNIPLA 57

Query:    60 GVSFPPSLPDFVEPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASN 119
             GVS PP L D VEP K+K TTL NG+ IA+E S +PAASIGLY+D GS+YETP   GA++
Sbjct:    58 GVSLPPPLSDHVEPSKLKTTTLPNGLTIATEMSPNPAASIGLYVDCGSIYETPQFRGATH 117

Query:   120 LLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCV 179
             LLE+MAFKST NRSH R+VRE+EAIGG+  ASASREQMGY+ DALKTYVPEMVE+L+D V
Sbjct:   118 LLERMAFKSTLNRSHFRLVREIEAIGGNTSASASREQMGYTIDALKTYVPEMVEVLIDSV 177

Query:   180 RNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLD 239
             RNP FLDWEVNEELRK+K E+GE   NP G LLEA+HS GY+GAL NPL APESA+  L 
Sbjct:   178 RNPAFLDWEVNEELRKVKVEIGEFATNPMGFLLEAVHSAGYSGALANPLYAPESAITGLT 237

Query:   240 GTILEEIVAENFTAPRMVLAASGVDLDELLPIAEXXXXXXXXXXXXTEPKSVYIGGDYRQ 299
             G +LE  V EN+TA RMVLAASGVD +ELL + E             EPKS Y+GGD+RQ
Sbjct:   238 GEVLENFVFENYTASRMVLAASGVDHEELLKVVEPLLSDLPNVPRPAEPKSQYVGGDFRQ 297

Query:   300 QADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMXXXXXXXXXXXXXXMHTRLYLRVLN 359
                   TH ALAFEVPG W  +KEAII TVLQ+LM              MH+ LYLR+LN
Sbjct:   298 HTGGEATHFALAFEVPG-WNNEKEAIIATVLQMLMGGGGSFSAGGPGKGMHSWLYLRLLN 356

Query:   360 EYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRA 419
             ++QQ QS +AF S+FNNTGLFGIY CT  +F S+ ++LV  E+  +A  K V Q  L+RA
Sbjct:   357 QHQQFQSCTAFTSVFNNTGLFGIYGCTSPEFASQGIELVASEMNAVADGK-VNQKHLDRA 415

Query:   420 KEATKSAVLMNLESRKI 436
             K ATKSA+LMNLESR I
Sbjct:   416 KAATKSAILMNLESRMI 432
GO:0003824 "catalytic activity" evidence=IEA
GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0005741 "mitochondrial outer membrane" evidence=IDA
GO:0005743 "mitochondrial inner membrane" evidence=IDA
GO:0005758 "mitochondrial intermembrane space" evidence=IDA
GO:0005759 "mitochondrial matrix" evidence=IDA
GO:0009536 "plastid" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0009853 "photorespiration" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
GO:0080129 "proteasome core complex assembly" evidence=RCA
TAIR|locus:2034096 AT1G51980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000062345 AN1104 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFE1155c PFE1155c "mitochondrial processing peptidase alpha subunit, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8I3N3 PFE1155c "Mitochondrial processing peptidase alpha subunit, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
UNIPROTKB|F1P582 UQCRC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-405 uqcrc2a "ubiquinol-cytochrome c reductase core protein IIa" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3S2 PMPCB "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PUK2 PMPCB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SB55 PMPCB "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P29677MPPA_SOLTU1, ., 1, 0, ., 2, ., 20.66740.99770.8630N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00034277001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (506 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00021058001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (523 aa)
  ••••••0.433

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query436
COG0612438 COG0612, PqqL, Predicted Zn-dependent peptidases [ 2e-46
pfam00675149 pfam00675, Peptidase_M16, Insulinase (Peptidase fa 4e-41
pfam05193182 pfam05193, Peptidase_M16_C, Peptidase M16 inactive 3e-32
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information 
 Score =  165 bits (420), Expect = 2e-46
 Identities = 90/372 (24%), Positives = 155/372 (41%), Gaps = 25/372 (6%)

Query: 75  KVKVTTLENGIRIAS-ETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRS 133
            ++V TL NG+R+ +     +P  S+ +++  GS  E     G ++ LE MAFK T    
Sbjct: 16  GLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLP 75

Query: 134 HLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEEL 193
              +    E +GG + A  S +   Y    L   + + ++LL D + NP F + EV  E 
Sbjct: 76  SAELAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREK 135

Query: 194 RKLKSELGELHNNPQGLLLEAIHSTGYAG-ALGNPLLAPESALNRLDGTILEEIVAENFT 252
             +  E+    ++P  L  E +    Y    LG P+L  E ++  +    L++   + + 
Sbjct: 136 GVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGTEESIEAITREDLKDFYQKWYQ 195

Query: 253 APRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEPKSV-YIGG------DYRQQADSP 304
              MVL   G VD +E++ + E    DLP   PP +      +G       +  +Q D  
Sbjct: 196 PDNMVLVVVGDVDAEEVVELIEKYFGDLPGAAPPPKIPPEPPLGPERVVRVNDPEQPDLE 255

Query: 305 ETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQI 364
           +  +AL +  P       +     +L   + GGG  S          RL+  +  +    
Sbjct: 256 QAWLALGYPGPD--YDSPDDYAALLLLNGLLGGGFSS----------RLFQELREKRGLA 303

Query: 365 QSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELI--LIATPKQVTQVQLNRAKEA 422
            S S+F+   +++GLF IYA T  +   K  +L V E++  L    K     +   A + 
Sbjct: 304 YSVSSFSDFLSDSGLFSIYAGTAPENPEKTAEL-VEEILKALKKGLKGPFTEEELDAAKQ 362

Query: 423 TKSAVLMNLESR 434
               +L+     
Sbjct: 363 LLIGLLLLSLDS 374

Length = 438
>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16) Back     alignment and domain information
>gnl|CDD|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 436
KOG2067472 consensus Mitochondrial processing peptidase, alph 100.0
KOG0960467 consensus Mitochondrial processing peptidase, beta 100.0
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 100.0
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 100.0
PRK15101 961 protease3; Provisional 100.0
KOG2583429 consensus Ubiquinol cytochrome c reductase, subuni 100.0
PTZ00432 1119 falcilysin; Provisional 100.0
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 100.0
PRK15101961 protease3; Provisional 99.97
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 99.97
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 99.9
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 99.9
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 99.89
COG1025937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.83
KOG2019 998 consensus Metalloendoprotease HMP1 (insulinase sup 99.81
KOG0961 1022 consensus Predicted Zn2+-dependent endopeptidase, 99.79
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 99.74
COG1026978 Predicted Zn-dependent peptidases, insulinase-like 99.73
KOG2019998 consensus Metalloendoprotease HMP1 (insulinase sup 99.7
PTZ004321119 falcilysin; Provisional 99.69
KOG09611022 consensus Predicted Zn2+-dependent endopeptidase, 98.61
PF08367248 M16C_assoc: Peptidase M16C associated; InterPro: I 98.5
PF03410 590 Peptidase_M44: Protein G1; InterPro: IPR005072 In 98.1
PHA03081 595 putative metalloprotease; Provisional 97.86
KOG0960467 consensus Mitochondrial processing peptidase, beta 96.07
TIGR02110696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 95.68
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 94.88
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 94.17
KOG2067472 consensus Mitochondrial processing peptidase, alph 93.59
PF0985131 SHOCT: Short C-terminal domain; InterPro: IPR01864 87.4
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 84.4
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-80  Score=572.49  Aligned_cols=361  Identities=48%  Similarity=0.733  Sum_probs=346.9

Q ss_pred             CCCCeEEEEcCCCcEEEEeeCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeEe
Q 013782           72 EPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILAS  151 (436)
Q Consensus        72 ~~~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~  151 (436)
                      ++.++++++|+||+||++++++++.+.++++|++|+++|.+...|++|++|+|+|++|.+++..++..+||.+||+++|+
T Consensus        21 ~~~~~kvttL~NGlkvase~~pg~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~ei~~~LE~~GGn~~cq  100 (472)
T KOG2067|consen   21 EPSNTKVTTLPNGLKVASENTPGQFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSKEILAELEKLGGNCDCQ  100 (472)
T ss_pred             ccccceeeecCCccEEeccCCCCCceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHHHHHHHHHHhCCccccc
Confidence            66799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCCC
Q 013782          152 ASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLA  230 (436)
Q Consensus       152 ~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~  230 (436)
                      ++||+++|.+++.+++++.++++|+|.+.+|+|++|+++.++..++.|+.+...+|+..+.+.+|.++| ++++|.+.++
T Consensus       101 sSRetm~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~~~Pe~lL~e~iH~Aay~~ntlg~pl~c  180 (472)
T KOG2067|consen  101 SSRETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEELWMRPEPLLTEMIHSAAYSGNTLGLPLLC  180 (472)
T ss_pred             ccHhhhHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhheccccccCchhhHHHHHHHHHhccCcccccccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             ChhhhcCCCHHHHHHHhhhccCCCCeEEEEeCCCHHHHHHHHhhhcCCCCCC--CCCCCCCCCcCCCeeEEecC------
Q 013782          231 PESALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRL--PPPTEPKSVYIGGDYRQQAD------  302 (436)
Q Consensus       231 ~~~~l~~l~~~~l~~f~~~~~~~~~~~l~ivGv~~~~l~~~~~~~~~~lp~~--~~~~~~~~~~~~~~~~~~~~------  302 (436)
                      +++.|++|+.+.|.+|.+++|+|+||+++.|||+||++++.+++||++||+.  ++...++.+|+||...++.|      
T Consensus       181 p~~~i~~I~~~~l~~yl~~~ytp~rmVlA~vGV~heelv~~~~~~~~~~~s~~~p~i~~~~aQYtGG~~~~~~d~~~~~~  260 (472)
T KOG2067|consen  181 PEENIDKINREVLEEYLKYFYTPERMVLAGVGVEHEELVEIAEKLLGDLPSTKVPPIDESKAQYTGGELKIDTDAPQVTG  260 (472)
T ss_pred             ChhhhhhhhHHHHHHHHHhcCChhheEeeecCCCHHHHHHHHHHHhccCCccCCCCcccchhhccccccccCCCCccccC
Confidence            9999999999999999999999999999999999999999999999999984  34445678999997776654      


Q ss_pred             -CCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccCCCceEE
Q 013782          303 -SPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFG  381 (436)
Q Consensus       303 -~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~~~~~~f~  381 (436)
                       ...+||+++|++++  ++++|++++.|||.+|||||||||||||||||||||.+|.++++|+|+|.|+++.|+|+|+|+
T Consensus       261 g~EltHv~lg~Eg~~--~~deD~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhsy~DtGlfg  338 (472)
T KOG2067|consen  261 GPELTHVVLGFEGCS--WNDEDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHSYSDTGLFG  338 (472)
T ss_pred             ccceeeeeEeeccCC--CCChhHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhccccCCceeE
Confidence             25899999999996  588899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccCCCC
Q 013782          382 IYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRKI  436 (436)
Q Consensus       382 i~~~~~p~~~~~~~~~~~~~l~~l~~~g~~~~~el~~aK~~l~~~l~~~les~~~  436 (436)
                      |+.+++|+++.+++..+.+|+..+.. | ++++||+|||+++++.++|||||++|
T Consensus       339 i~~s~~P~~a~~aveli~~e~~~~~~-~-v~~~el~RAK~qlkS~LlMNLESR~V  391 (472)
T KOG2067|consen  339 IYASAPPQAANDAVELIAKEMINMAG-G-VTQEELERAKTQLKSMLLMNLESRPV  391 (472)
T ss_pred             EeccCCHHHHHHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHHHhcccccch
Confidence            99999999999999999999999987 4 99999999999999999999999987

>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PHA03081 putative metalloprotease; Provisional Back     alignment and domain information
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query436
3cwb_B441 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 1e-40
3bcc_B422 Stigmatellin And Antimycin Bound Cytochrome Bc1 Com 4e-37
1bcc_A446 Cytochrome Bc1 Complex From Chicken Length = 446 1e-36
1bcc_B422 Cytochrome Bc1 Complex From Chicken Length = 422 2e-36
3cwb_A446 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 3e-36
1qcr_B423 Crystal Structure Of Bovine Mitochondrial Cytochrom 2e-35
1sqb_B453 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 3e-35
1bgy_B439 Cytochrome Bc1 Complex From Bovine Length = 439 3e-35
1hr6_A 475 Yeast Mitochondrial Processing Peptidase Length = 4 2e-33
1bgy_A446 Cytochrome Bc1 Complex From Bovine Length = 446 2e-31
1qcr_A446 Crystal Structure Of Bovine Mitochondrial Cytochrom 2e-31
1sqb_A480 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 2e-31
3hdi_A421 Crystal Structure Of Bacillus Halodurans Metallo Pe 1e-26
1hr6_B443 Yeast Mitochondrial Processing Peptidase Length = 4 5e-23
1hr7_B443 Yeast Mitochondrial Processing Peptidase Beta-E73q 1e-22
1ezv_B352 Structure Of The Yeast Cytochrome Bc1 Complex Co- C 4e-07
3amj_C437 The Crystal Structure Of The Heterodimer Of M16b Pe 2e-05
3ami_A445 The Crystal Structure Of The M16b Metallopeptidase 2e-05
1ezv_A430 Structure Of The Yeast Cytochrome Bc1 Complex Co- C 1e-04
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 441 Back     alignment and structure 
Iteration: 1

 Score =  163 bits (413), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/363 (30%), Positives = 182/363 (50%), Gaps = 9/363 (2%)
Query: 73  PG--KVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTK 130
           PG   +++T L NG+ IAS  + SPA+ IG+++  GS YET ++ G ++LL   +  +TK
Sbjct: 21  PGAEDLEITKLPNGLIIASLENFSPASRIGVFIKAGSRYETTANLGTAHLLRLASPLTTK 80
Query: 131 NRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVN 190
             S  RI R +EA+GGS+   ++RE+M Y  + L+ +V  ++E L++    P F  WEV 
Sbjct: 81  GASSFRITRGIEAVGGSLSVYSTREKMTYCVECLRDHVDTVMEYLLNVTTAPEFRPWEVT 140
Query: 191 EELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAEN 250
           +   +LK +      +PQ  +LE +H+  Y  AL NPL  P+  + ++    L   V  N
Sbjct: 141 DLQPQLKVDKAVAFQSPQVGVLENLHAAAYKTALANPLYCPDYRIGKITSEQLHHFVQNN 200
Query: 251 FTAPRMVLAASGVDLDELLPIAEXXXXXXXXXXXXTEPKSVYIGGDYRQQADSPETHIAL 310
           FT+ RM L   GV   +L  +AE            +  K+ Y GG+ R+Q      H A+
Sbjct: 201 FTSARMALVGIGVKHSDLKQVAE-QFLNIRSGAGTSSAKATYWGGEIREQNGHSLVHAAV 259
Query: 311 AFEVPGGWLKDKEAIILTVLQVLMXXXXXXXXXXXXXXMHTRLYLRVLNEYQQIQSFSAF 370
             E  G  +   EA   +VLQ ++              + ++LY  V     Q    SAF
Sbjct: 260 VTE--GAAVGSAEANAFSVLQHVL---GAGPLIKRGSSVTSKLYQGVAKATTQPFDASAF 314
Query: 371 NSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMN 430
           N  ++++GLFG Y  + +    + +   + +L   A    VT+  + +AK   K+  LM+
Sbjct: 315 NVNYSDSGLFGFYTISQAAHAGEVIRAAMNQL-KAAAQGGVTEEDVTKAKNQLKATYLMS 373
Query: 431 LES 433
           +E+
Sbjct: 374 VET 376
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken Length = 446 Back     alignment and structure
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 446 Back     alignment and structure
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 423 Back     alignment and structure
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 453 Back     alignment and structure
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine Length = 439 Back     alignment and structure
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase Length = 475 Back     alignment and structure
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine Length = 446 Back     alignment and structure
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 446 Back     alignment and structure
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 480 Back     alignment and structure
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase Length = 421 Back     alignment and structure
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase Length = 443 Back     alignment and structure
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Length = 443 Back     alignment and structure
>pdb|1EZV|B Chain B, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 352 Back     alignment and structure
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase From Sphingomonas Sp. A1 Length = 437 Back     alignment and structure
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit From Sphingomonas Sp. A1 Length = 445 Back     alignment and structure
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 430 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query436
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 1e-142
1hr6_A 475 Alpha-MPP, mitochondrial processing peptidase alph 1e-141
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 1e-128
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 1e-125
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 1e-113
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 3e-97
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 1e-86
3eoq_A406 Putative zinc protease; two similar domains of bet 3e-75
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 3e-49
3gwb_A434 Peptidase M16 inactive domain family protein; pept 4e-44
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 2e-43
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 3e-29
3go9_A 492 Insulinase family protease; IDP00573, structural g 2e-24
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 8e-19
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 3e-16
3ih6_A197 Putative zinc protease; bordetella pertussis toham 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Length = 439 Back     alignment and structure
 Score =  412 bits (1061), Expect = e-142
 Identities = 110/378 (29%), Positives = 181/378 (47%), Gaps = 9/378 (2%)

Query: 57  PLEGVSFPPSLPDFVEPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCG 116
            ++    P  +P    P  ++ T L NG+ IAS  + +PA+ IGL++  GS YE  ++ G
Sbjct: 7   KVKATEAPAGVPP--HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLG 64

Query: 117 ASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLV 176
            S+LL   +  +TK  S  +I R +EA+GG +  +++RE M Y+ + L+  V  ++E L+
Sbjct: 65  TSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLL 124

Query: 177 DCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALN 236
           +    P F  WEV     +L+ +      NPQ  ++E +H+  Y  AL N L  P+  + 
Sbjct: 125 NVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIG 184

Query: 237 RLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPPTEPKSVYIGGD 296
           ++    L + V  +FT+ RM L   GV    L  +AE  L+        +  K+ Y GG+
Sbjct: 185 KVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLNIRGG-LGLSGAKAKYHGGE 243

Query: 297 YRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLR 356
            R+Q      H AL  E     +   EA   +VLQ ++G G        G    + LY  
Sbjct: 244 IREQNGDSLVHAALVAESAA--IGSAEANAFSVLQHVLGAG---PHVKRGSNATSSLYQA 298

Query: 357 VLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQL 416
           V     Q    SAFN+ ++++GLFG Y  + +      +     ++  IA    ++   +
Sbjct: 299 VAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQ-GNLSNPDV 357

Query: 417 NRAKEATKSAVLMNLESR 434
             AK   K+  LM++ES 
Sbjct: 358 QAAKNKLKAGYLMSVESS 375
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Length = 475 Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Length = 446 Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Length = 443 Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Length = 431 Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Length = 352 Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Length = 421 Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Length = 406 Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Length = 424 Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Length = 434 Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Length = 425 Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Length = 445 Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Length = 492 Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990 Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Length = 197 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query436
1hr6_A 475 Alpha-MPP, mitochondrial processing peptidase alph 100.0
3eoq_A406 Putative zinc protease; two similar domains of bet 100.0
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 100.0
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 100.0
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 100.0
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 100.0
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 100.0
3gwb_A434 Peptidase M16 inactive domain family protein; pept 100.0
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 100.0
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 100.0
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 100.0
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 100.0
3go9_A 492 Insulinase family protease; IDP00573, structural g 100.0
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 100.0
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 100.0
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 100.0
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 100.0
1q2l_A939 Protease III; hydrolase; 2.20A {Escherichia coli s 99.98
2fge_A995 Atprep2;, zinc metalloprotease (insulinase family) 99.97
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 99.96
3s5m_A1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 99.92
3ih6_A197 Putative zinc protease; bordetella pertussis toham 99.71
3ih6_A197 Putative zinc protease; bordetella pertussis toham 98.31
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 97.94
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 97.93
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 97.91
3eoq_A406 Putative zinc protease; two similar domains of bet 97.91
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 97.85
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 97.77
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 97.7
3gwb_A434 Peptidase M16 inactive domain family protein; pept 97.65
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 97.49
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 97.38
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 96.98
3go9_A492 Insulinase family protease; IDP00573, structural g 96.5
3cx5_B 352 Cytochrome B-C1 complex subunit 2, mitochondrial; 88.09
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
Probab=100.00  E-value=1.6e-57  Score=463.22  Aligned_cols=358  Identities=31%  Similarity=0.535  Sum_probs=332.6

Q ss_pred             CCeEEEEcCCCcEEEEeeCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeEeeC
Q 013782           74 GKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASAS  153 (436)
Q Consensus        74 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~  153 (436)
                      +.++.++|+||++|++.+.+.+.+++++++++|+++|++.+.|++|+++||+|+||.+++..++.+.++..|+.++++++
T Consensus         4 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t~   83 (475)
T 1hr6_A            4 DNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSS   83 (475)
T ss_dssp             TCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEEC
T ss_pred             CCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence            57899999999999988877899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 013782          154 REQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPE  232 (436)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~  232 (436)
                      ++.+.|++++++++++.+|++|.+++.+|.|++++|+++|..+.+|++...++|...+.+.++..+| ++||+++.+|++
T Consensus        84 ~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~  163 (475)
T 1hr6_A           84 RENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPR  163 (475)
T ss_dssp             SSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCG
T ss_pred             cCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence            9999999999999999999999999999999999999999999999999889999999999999999 899999999999


Q ss_pred             hhhcCCCHHHHHHHhhhccCCCCeEEEEeCCCHHHHHHHHhhhcCCCCCCCCC-CCCCCCcCCCeeEEe------cCCCc
Q 013782          233 SALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPP-TEPKSVYIGGDYRQQ------ADSPE  305 (436)
Q Consensus       233 ~~l~~l~~~~l~~f~~~~~~~~~~~l~ivGv~~~~l~~~~~~~~~~lp~~~~~-~~~~~~~~~~~~~~~------~~~~~  305 (436)
                      +.|++++.++|++||+++|+|+||+++++|+++++++++++++|+.||..+.+ ....+.+.++..++.      .+.++
T Consensus       164 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~G~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (475)
T 1hr6_A          164 GLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPEL  243 (475)
T ss_dssp             GGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEECCCCCCSSSCCC
T ss_pred             HHHhhcCHHHHHHHHHHhCCcccEEEEEeCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCcCCeEEEecccccCCCccc
Confidence            99999999999999999999999999999999999999999999999865433 222334555555554      45788


Q ss_pred             eEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccCCCceEEEEEE
Q 013782          306 THIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYAC  385 (436)
Q Consensus       306 ~~v~~~~~~~~~~~~~~~~~~~~vl~~lLgg~~s~s~gg~g~gm~s~L~~~lRe~~~~~Ys~~a~~~~~~~~~~f~i~~~  385 (436)
                      +++.++|.+++  .++++..++.|++.||||+++||+|||||||+++||++||++.|++|++++++..+.+.|.|.|++.
T Consensus       244 ~~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~~~  321 (475)
T 1hr6_A          244 FHIQIGFEGLP--IDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLS  321 (475)
T ss_dssp             EEEEEEEECCC--TTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEEEE
T ss_pred             eEEEEEEecCC--CCCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEEEE
Confidence            99999999876  5788999999999999999999999999999999999999999999999999888888899999999


Q ss_pred             eCcchHHHHHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHHHHHhccCC
Q 013782          386 TGSDFVSKAVDLVVRELILIAT---PKQVTQVQLNRAKEATKSAVLMNLESR  434 (436)
Q Consensus       386 ~~p~~~~~~~~~~~~~l~~l~~---~g~~~~~el~~aK~~l~~~l~~~les~  434 (436)
                      ++|+++.++++.+.+++.++.+   .| ++++||++||++++.++.++++++
T Consensus       322 ~~~~~~~~~~~~~~~~l~~l~~~~~~~-~t~~El~~ak~~l~~~~~~~~~~~  372 (475)
T 1hr6_A          322 CIPQAAPQAVEVIAQQMYNTFANKDLR-LTEDEVSRAKNQLKSSLLMNLESK  372 (475)
T ss_dssp             ECGGGHHHHHHHHHHHHHTTTTCTTSC-CCHHHHHHHHHHHHHHHHHHTTSH
T ss_pred             eCHHHHHHHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHhCCCH
Confidence            9999999999999999999987   56 999999999999999999988864
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 436
d1ppjb1219 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 2e-32
d1hr6a1220 d.185.1.1 (A:14-233) Mitochondrial processing pept 1e-28
d3cx5b1202 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 8e-28
d1ppja1232 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 7e-24
d1hr6b1222 d.185.1.1 (B:24-245) Mitochondrial processing pept 1e-22
d3cx5a1213 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 7e-22
d3cx5a2218 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 2e-19
d1hr6a2237 d.185.1.1 (A:234-470) Mitochondrial processing pep 2e-19
d1ppjb2204 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2e-18
d1q2la4240 d.185.1.1 (A:24-263) Protease III {Escherichia col 1e-17
d1hr6b2217 d.185.1.1 (B:246-462) Mitochondrial processing pep 1e-16
d1ppja2209 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 2e-15
d2fgea4257 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 2e-14
d3cx5b2150 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 7e-13
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 219 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  120 bits (301), Expect = 2e-32
 Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 6/222 (2%)

Query: 64  PPSLPDFVEPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEK 123
           PP       P  ++ T L NG+ IAS  + +PA+ IGL++  GS YE  ++ G S+LL  
Sbjct: 2   PPH------PQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRL 55

Query: 124 MAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPV 183
            +  +TK  S  +I R +EA+GG +  +++RE M Y+ + L+  V  ++E L++    P 
Sbjct: 56  ASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPE 115

Query: 184 FLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTIL 243
           F  WEV     +L+ +      NPQ  ++E +H+  Y  AL N L  P+  + ++    L
Sbjct: 116 FRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVEL 175

Query: 244 EEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPP 285
            + V  +FT+ RM L   GV    L  +AE  L+    L   
Sbjct: 176 HDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLNIRGGLGLS 217
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 220 Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 202 Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 232 Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 218 Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 204 Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Length = 240 Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 217 Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 209 Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 257 Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query436
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 100.0
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 100.0
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 100.0
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 100.0
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 100.0
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 100.0
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.97
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 99.95
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 99.9
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.9
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 99.88
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 99.88
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.77
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.74
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 99.35
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 99.3
d3cx5b2150 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.02
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 98.97
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 98.6
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 98.5
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 98.39
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 98.35
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 98.15
d2fgea3 268 Presequence protease 1, PREP1 {Thale cress (Arabid 97.92
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 97.67
d1q2la3240 Protease III {Escherichia coli [TaxId: 562]} 97.18
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 97.14
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 92.49
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 92.03
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 90.51
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 89.87
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 89.54
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 88.59
d1q2la3240 Protease III {Escherichia coli [TaxId: 562]} 88.48
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 87.62
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 84.68
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Mitochondrial processing peptidase (MPP) alpha chain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-37  Score=280.50  Aligned_cols=211  Identities=27%  Similarity=0.471  Sum_probs=204.8

Q ss_pred             CCeEEEEcCCCcEEEEeeCCCCeEEEEEEEeccccCCCCCCCchHHHHHHhhcccCCCCCHHHHHHHHHHcCCeeeEeeC
Q 013782           74 GKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASAS  153 (436)
Q Consensus        74 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~  153 (436)
                      ..+++++|+||++|+..+.+++.++|++++++|+++|++...|++|+++||+++||.+++..++.+.++..|+.++++++
T Consensus         4 ~~~~~~~L~NGl~v~~~~~~~~~~~v~l~~~~G~~~e~~~~~G~a~ll~~ll~~gt~~~~~~~~~~~~~~~g~~~~~~~~   83 (220)
T d1hr6a1           4 DNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSS   83 (220)
T ss_dssp             TCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEEC
T ss_pred             CCceEEEcCCCCEEEEEeCCCCEEEEEEEEcccccccCCCCchHHHHHHHHHhccccccchHHHHHHHHHhcchhhhccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 013782          154 REQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPE  232 (436)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~  232 (436)
                      ++.+.|++++++++++.+|++|.+++.+|.|++++|+++|..+.++++...++|...+.+.++..+| ++||+++..|++
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~~~~~~~~~ek~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~g~~  163 (220)
T d1hr6a1          84 RENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPR  163 (220)
T ss_dssp             SSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCG
T ss_pred             ccceeeeccccccccchhhhhhhHhhhcccchhhhhhhhcchhhhhhhhhhccchhhhhhhhccccccccCCcccccccH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 899999999999


Q ss_pred             hhhcCCCHHHHHHHhhhccCCCCeEEEEeCCCHHHHHHHHhhhcCCCCCCCC
Q 013782          233 SALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPP  284 (436)
Q Consensus       233 ~~l~~l~~~~l~~f~~~~~~~~~~~l~ivGv~~~~l~~~~~~~~~~lp~~~~  284 (436)
                      +.|++++.++|++||+++|.|+||+++|+|+++++++++++++|++||+..+
T Consensus       164 ~~i~~it~~dl~~f~~~~y~~~n~~l~i~G~~~~~~~~~i~~~fg~~~~~~~  215 (220)
T d1hr6a1         164 GLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHP  215 (220)
T ss_dssp             GGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCC
T ss_pred             HHHhhCCHHHHHHHHHHhCCcccEEEEEECCCHHHHHHHHHHHhcCCCCCCC
Confidence            9999999999999999999999999999999999999999999999987653
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure