Citrus Sinensis ID: 013800
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 436 | 2.2.26 [Sep-21-2011] | |||||||
| Q54NS3 | 263 | TPR repeat-containing pro | yes | no | 0.373 | 0.619 | 0.225 | 6e-06 |
| >sp|Q54NS3|Y5095_DICDI TPR repeat-containing protein DDB_G0285095 OS=Dictyostelium discoideum GN=DDB_G0285095 PE=4 SV=1 | Back alignment and function desciption |
|---|
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 73/191 (38%), Gaps = 28/191 (14%)
Query: 225 IDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQH 284
+ E P LL Y LL +G AE+ A D + +W Y + + + +
Sbjct: 80 LQEQPQDSDLLAQYGVLLSMEGKNKEAEESLRKAVEVDTDNSRAWQAYGEFLERTNNPKK 139
Query: 285 RALTYFERAALAAPQ------DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGD 338
Y E AAP+ DS++L +YA F IQ G+
Sbjct: 140 AKEVYGEAYKHAAPKIALDEDDSSLLLSYAIF----------------------IQKSGE 177
Query: 339 LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAY 398
++ AE+ + R + + E + +Y + E+ D +K Y + A P Y
Sbjct: 178 IDKAEKLYKRIVTSGARSSESLGRYGLFLLEVKKDVEKGGIYLKDAADIDPPSPEWCTRY 237
Query: 399 ACFLWETEEDE 409
+ +L ++DE
Sbjct: 238 SNYLKTYKKDE 248
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Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 436 | ||||||
| 255574883 | 502 | o-linked n-acetylglucosamine transferase | 0.972 | 0.844 | 0.488 | 1e-107 | |
| 359477777 | 492 | PREDICTED: uncharacterized protein LOC10 | 0.972 | 0.861 | 0.472 | 1e-101 | |
| 296083733 | 531 | unnamed protein product [Vitis vinifera] | 0.972 | 0.798 | 0.404 | 5e-81 | |
| 147859668 | 521 | hypothetical protein VITISV_026571 [Viti | 0.871 | 0.729 | 0.417 | 7e-76 | |
| 357440919 | 376 | TPR domain protein [Medicago truncatula] | 0.660 | 0.765 | 0.428 | 5e-70 | |
| 356533818 | 368 | PREDICTED: uncharacterized protein LOC10 | 0.681 | 0.807 | 0.430 | 5e-65 | |
| 449432498 | 367 | PREDICTED: uncharacterized protein LOC10 | 0.715 | 0.850 | 0.427 | 9e-63 | |
| 356576440 | 285 | PREDICTED: uncharacterized protein LOC10 | 0.516 | 0.789 | 0.456 | 7e-60 | |
| 297848682 | 308 | hypothetical protein ARALYDRAFT_470433 [ | 0.658 | 0.931 | 0.443 | 8e-58 | |
| 21555875 | 310 | unknown [Arabidopsis thaliana] | 0.676 | 0.951 | 0.451 | 1e-57 |
| >gi|255574883|ref|XP_002528348.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] gi|223532216|gb|EEF34020.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 248/508 (48%), Positives = 311/508 (61%), Gaps = 84/508 (16%)
Query: 1 MLLRSSSTPVNIGSLVSP-SLSDSPNKDVEEDT--------NRLNSTTLSC--SSPPTSQ 49
M+LRSSS PV G+ +SP S SDSPN+D + + LN T +SC SS P S+
Sbjct: 1 MILRSSSNPV-TGTFLSPFSSSDSPNRDFHDHNKLSSSHGFHHLNLTPISCTNSSSPISE 59
Query: 50 ENCSSSLKGLRRASSDGNLKGLAHSHSSCDIEDQIRYLCAQKKSSCLHNKANKTMLRSAP 109
N S L G RRA SD NL+ + SS D +++++ + + TML++AP
Sbjct: 60 HNDSFRLGGFRRAWSDSNLEKFVYPSSSSDHKEELQNFTSHTPKR-FTKRNYTTMLQTAP 118
Query: 110 SFEIYS---------SVEGVESEEVSLTRTVTIGEDLDGSGISSGDFSFGSKKNMGLIEE 160
SF I++ GVE EE L RTVTIG+ ++G+ S+G+ SF KK+MGLIEE
Sbjct: 119 SFSIFNVNDHELQDQEKNGVEEEERGLMRTVTIGDIIEGT--SNGELSF-EKKSMGLIEE 175
Query: 161 EGEY--------EEEGLNGIGEEIERPVSPPMYLAMGLGISVPGFDDAGEVVDL---IMP 209
EGE E E LN E ++ PVSPPMYLA GLGI F G +P
Sbjct: 176 EGEEEQDQEVMNEIENLNL--ENVKEPVSPPMYLASGLGIDGIDFGGGGRGGGGFDSTLP 233
Query: 210 NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESW 269
NFD+S + EEYYKRM+DE+PCHPL L NYAQLLQ KGDL+ AE+YY AT+ADP DGE
Sbjct: 234 NFDESDDLEEYYKRMVDEFPCHPLFLANYAQLLQSKGDLHGAEEYYYRATVADPEDGEIL 293
Query: 270 MQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQ 329
M+YAKL W+LH DQ RA + FERA AAPQDS++LAAYA FLWE++ DGE+D+ Q +HIQ
Sbjct: 294 MKYAKLEWQLHHDQDRAWSNFERAIQAAPQDSHVLAAYASFLWEIDGDGEEDRWQTKHIQ 353
Query: 330 VLP---------------------------------------------IQSKGDLEGAEE 344
+ P Q+KGD+ GAEE
Sbjct: 354 LPPGLIMDVDDDAASATNKGFAVEEYYKKMVEENPSNSLVLRNYAQFLYQAKGDIRGAEE 413
Query: 345 YFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404
Y+SRA+LA+PGDGEI SQYAKLVWEL D DKA YFE+AVQA+P +S+VLAAYA FLWE
Sbjct: 414 YYSRALLADPGDGEIKSQYAKLVWELGRDRDKASSYFEQAVQAAPGNSNVLAAYASFLWE 473
Query: 405 TEEDEDDSKSSDQFQQVAPIRQGAVTTA 432
TEE+E+DS SDQFQ+V + +VT A
Sbjct: 474 TEENEEDSTCSDQFQEVIH-HESSVTAA 500
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359477777|ref|XP_002282135.2| PREDICTED: uncharacterized protein LOC100261301 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 236/500 (47%), Positives = 304/500 (60%), Gaps = 76/500 (15%)
Query: 1 MLLRSSSTPVNIGSLVSPSLS------------DSPNKDVEEDTNRLNSTTLSCSSPPT- 47
MLLRSSSTPV +L+SP + K + L+ SC+S P
Sbjct: 1 MLLRSSSTPVLGTTLLSPFSESPSRDSESSSHGNPTTKITFSHSGHLSFPLFSCNSSPLP 60
Query: 48 ----SQENCSSSLKGLRRASSDGNLKGLAHSHSSCDIEDQIRYLCAQKKSSCLHNKANKT 103
+ N S + KG RR+ S+GNL+GL HS S D+E+ R S +K +K
Sbjct: 61 HSFDQEPNSSINPKGFRRSRSEGNLEGLGHS--SFDLEEFRR--SESNTSKKYFDKTHKA 116
Query: 104 MLRSAPSFEIYSSVEGV-----------ESEEVSLTRTVTIGEDLDGSGISSGDFSFGSK 152
ML + PSF IY+ +GV E E L RT+TI E + G+ +S +FSFG +
Sbjct: 117 MLETTPSFSIYNLTQGVEGEEGSQQEEIEGEVFVLERTITIEESIRGT--TSREFSFG-R 173
Query: 153 KNMGLIEEEGEYEE-EGLNGIG-EEIERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPN 210
K MGLIEEE E E+ G +G E+ PVSP MYLA GLG+ G VD +
Sbjct: 174 KTMGLIEEEEEEEDVNGFQKLGVEDGVEPVSPLMYLATGLGMDGA--GFGGGRVDFAAAD 231
Query: 211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWM 270
FD+S + EEYY+RM++E PC+PL LRNYAQLLQ KGDL RAE+YY+ AT+ADP DGE M
Sbjct: 232 FDESGDVEEYYRRMVNEDPCNPLFLRNYAQLLQSKGDLQRAEEYYSRATLADPQDGEILM 291
Query: 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV 330
QYAKL+W++HRDQ RAL+YFERAA A DS++LAA A FLW++ED+GEDD A++ ++V
Sbjct: 292 QYAKLIWDVHRDQARALSYFERAAKVASDDSHVLAANASFLWDIEDEGEDDTAEQGLVEV 351
Query: 331 L---------------------------PI----------QSKGDLEGAEEYFSRAILAN 353
L P+ Q+KG+L+ AEEY+SRAILA+
Sbjct: 352 LFQDSINASEISKVEEHYKKMVEENPCNPLFLRNYAQFLFQTKGELQQAEEYYSRAILAD 411
Query: 354 PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSK 413
PGDGEIMSQYAKL WELHHD DKAL YF++AVQA+P DSHVLAAYA FLWET+E+E+++
Sbjct: 412 PGDGEIMSQYAKLAWELHHDRDKALSYFKQAVQATPGDSHVLAAYARFLWETDEEEEENN 471
Query: 414 SSDQFQQVAPIRQGAVTTAN 433
+S Q + A T+AN
Sbjct: 472 ASMQDHIQVSLFHEAATSAN 491
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083733|emb|CBI23722.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 218/539 (40%), Positives = 287/539 (53%), Gaps = 115/539 (21%)
Query: 1 MLLRSSSTPVNIGSLVSPSL------------SDSPNKDVEEDTNRLNSTTLSCSSPPT- 47
MLLRSSSTPV +L+SP + K + L+ SC+S P
Sbjct: 1 MLLRSSSTPVLGTTLLSPFSESPSRDSESSSHGNPTTKITFSHSGHLSFPLFSCNSSPLP 60
Query: 48 ----SQENCSSSLKGLRRASSDGNLKGLAHSHSSCDIEDQIRYLCAQKKSSCLHNKANKT 103
+ N S + KG RR+ S+GNL+GL HS S D+E+ R S +K +K
Sbjct: 61 HSFDQEPNSSINPKGFRRSRSEGNLEGLGHS--SFDLEEFRR--SESNTSKKYFDKTHKA 116
Query: 104 MLRSAPSFEIYSSVEGV-----------ESEEVSLTRTVTIGEDLDGSGISSGDFSFGSK 152
ML + PSF IY+ +GV E E L RT+TI E + G+ +S +FSFG +
Sbjct: 117 MLETTPSFSIYNLTQGVEGEEGSQQEEIEGEVFVLERTITIEESIRGT--TSREFSFG-R 173
Query: 153 KNMGLIEEEGEYEE-EGLNGIG-EEIERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPN 210
K MGLIEEE E E+ G +G E+ PVSP MYLA GLG+ G VD +
Sbjct: 174 KTMGLIEEEEEEEDVNGFQKLGVEDGVEPVSPLMYLATGLGMDGA--GFGGGRVDFAAAD 231
Query: 211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWM 270
FD+S + EEYY+RM++E PC+PL LRNYAQLLQ KGDL RAE+YY+ AT+ADP DGE M
Sbjct: 232 FDESGDVEEYYRRMVNEDPCNPLFLRNYAQLLQSKGDLQRAEEYYSRATLADPQDGEILM 291
Query: 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ------ 324
QYAKL+W++HRDQ RAL+YFERAA A DS++LAA A FLW++ED+GEDD A+
Sbjct: 292 QYAKLIWDVHRDQARALSYFERAAKVASDDSHVLAANASFLWDIEDEGEDDTAEQGLVEE 351
Query: 325 ---EEH----------------------IQVLPIQSKG----------DLEGAEEYFSRA 349
E H I V S G ++ EE++ +
Sbjct: 352 GLSEFHNLDQEDENKPASPSLHPAAGLGIDVAACGSVGCVDFSSINASEISKVEEHYKKM 411
Query: 350 ILANPGDGEIMSQYAKLV-----------------------------------WELHHDH 374
+ NP + + YA+ + WELHHD
Sbjct: 412 VEENPCNPLFLRNYAQFLFQTKGELQQAEEYYSRAILADPGDGEIMSQYAKLAWELHHDR 471
Query: 375 DKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVTTAN 433
DKAL YF++AVQA+P DSHVLAAYA FLWET+E+E+++ +S Q + A T+AN
Sbjct: 472 DKALSYFKQAVQATPGDSHVLAAYARFLWETDEEEEENNASMQDHIQVSLFHEAATSAN 530
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147859668|emb|CAN83109.1| hypothetical protein VITISV_026571 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 290 bits (743), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 201/482 (41%), Positives = 262/482 (54%), Gaps = 102/482 (21%)
Query: 41 SCSSPPTSQENCSSSLKGLRRASSDGNLKGLAHSHSSCDIEDQIRYLCAQKKSSCLHNKA 100
SC P N S + KG RR+ S+GNL+GL HS S D+E+ R S +K
Sbjct: 52 SCFMEP----NSSINPKGFRRSRSEGNLEGLGHS--SFDLEEFRR--SESNTSKKYFDKT 103
Query: 101 NKTMLRSAPSFEIYSSVEGV-----------ESEEVSLTRTVTIGEDLDGSGISSGDFSF 149
+K ML + PSF IY+ +GV E E L RT TI E + G+ +S +FSF
Sbjct: 104 HKAMLETTPSFSIYNLTQGVEGEEGSQQEEIEGEVFVLERTTTIEESIRGT--TSREFSF 161
Query: 150 GSKKNMGLIEEEGEYEE-EGLNGIG-EEIERPVSPPMYLAMGLGISVPGFDDAGEVVDLI 207
G +K MGLIEEE E E+ G +G E+ PVSP MYLA GLG+ G VD
Sbjct: 162 G-RKTMGLIEEEEEEEDVNGFQKLGVEDGVEPVSPLMYLATGLGMDGA--GFGGGRVDFA 218
Query: 208 MPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE 267
+FD+S + EEYY+RM++E PC+PL LRNYAQLLQ KGDL RAE+YY+ AT+ADP DGE
Sbjct: 219 AADFDESGDVEEYYRRMVNEDPCNPLFLRNYAQLLQSKGDLQRAEEYYSRATLADPQDGE 278
Query: 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ--- 324
MQYAKL+W++HRDQ R L+YFERAA A DS++LAA A FLW++ED+GEDD A+
Sbjct: 279 ILMQYAKLIWDVHRDQARTLSYFERAAKVASDDSHVLAANASFLWDIEDEGEDDTAEQGL 338
Query: 325 ------EEH----------------------IQVLPIQSKG----------DLEGAEEYF 346
E H I V S G ++ EE++
Sbjct: 339 VEEGLSEFHNLDQEDENKPASPSLHPAAGLGIDVAACGSVGCVDFSSINASEISKVEEHY 398
Query: 347 SRAILANPGDGEIMSQYAKLV-----------------------------------WELH 371
+ + NP + + YA+ + WELH
Sbjct: 399 KKMVEENPCNPLFLRNYAQFLFQTKGELQQAEEYYSRAILADPGDGEIMSQYAKLAWELH 458
Query: 372 HDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVTT 431
HD DKAL YF++AVQA+P DSHVLAAYA FLWET+E+E+++ +S Q + A T+
Sbjct: 459 HDRDKALSYFKQAVQATPGDSHVLAAYARFLWETDEEEEENNASMQDHIQVSLFHEAATS 518
Query: 432 AN 433
AN
Sbjct: 519 AN 520
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357440919|ref|XP_003590737.1| TPR domain protein [Medicago truncatula] gi|355479785|gb|AES60988.1| TPR domain protein [Medicago truncatula] gi|388501702|gb|AFK38917.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 160/373 (42%), Positives = 212/373 (56%), Gaps = 85/373 (22%)
Query: 105 LRSAPSFEIYSSVEGVESEEVSLTRTVTIGEDLDGSGISSGDFSFGSKKNMGLIEEEGEY 164
LRS+PSFEIY++ + E L RTV E I + DF+F K M LI+EE +
Sbjct: 20 LRSSPSFEIYNNNDP----EQVLKRTVMSLE-----SIGTSDFTFERSK-MDLIQEEEDN 69
Query: 165 EEEGLN-----GIGEEIERPVSPPMYLAMGLGISVPGFDDAGEVV---------DLIMPN 210
E + G+ +++ +P +PPM+LA GLG+ D G+VV D+ +PN
Sbjct: 70 ENDWSTEIQNLGVVDDV-QPSTPPMFLATGLGV------DGGDVVSDNNFIISDDMFVPN 122
Query: 211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWM 270
+S +EYYK M+ +YP HPL+L+ YA LQ KG+L AE+Y++ AT+ADP DGE M
Sbjct: 123 LQESENLQEYYKIMVHDYPSHPLILKKYAHFLQGKGELQDAEEYFHRATLADPNDGEILM 182
Query: 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDD---GEDDKAQE-- 325
YAKLVWE H D+ RA YFERAA A+PQDS++LAAYA FLWE EDD E+ Q
Sbjct: 183 HYAKLVWENHHDRDRASVYFERAAKASPQDSDVLAAYASFLWETEDDENESENHTTQNDM 242
Query: 326 EHIQVLPIQSKGDLEG-------------------------------------------- 341
E + PI + + G
Sbjct: 243 EKQETKPINTANEENGAEKLATANYSEDSNDADYLKKMINENPNNPLFLKKYAQFLFQSN 302
Query: 342 -----AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLA 396
AE+Y+SRAI A+P DGE +S+YAKL W+LHHD +KAL FE+AV+A+P DS+VLA
Sbjct: 303 RDLEAAEDYYSRAISADPSDGETISEYAKLQWQLHHDQEKALSLFEQAVKATPGDSNVLA 362
Query: 397 AYACFLWETEEDE 409
AY CFLWETE++E
Sbjct: 363 AYTCFLWETEDEE 375
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533818|ref|XP_003535455.1| PREDICTED: uncharacterized protein LOC100805375 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 157/365 (43%), Positives = 202/365 (55%), Gaps = 68/365 (18%)
Query: 93 SSCLHNKANKTMLRSAPSFEIYSSVEGVESEEVSLTRTVTIGEDLDGSGISSGDFSFGSK 152
+S + ++ T L SAPSF IY+++ G + + IG+ L+ +G SG+FSFGS
Sbjct: 6 NSVMEDEFESTTLHSAPSFAIYNNLHGDDEITPAEVFKRAIGKSLEATG--SGEFSFGSN 63
Query: 153 KNMGLIEEEGEYEEEGLNGIG-----EEIERPVSPPMYLAMGLGISVP-GFDDAGEVVDL 206
K M LIEEE + GI EE +P SPPMYLA GLG+ GFD D+
Sbjct: 64 K-MDLIEEEENENNDWSTGIQNLSIEEEDVQPASPPMYLAAGLGVDGDVGFDKFISD-DV 121
Query: 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG 266
P+ ++S + YYKRM DEYPCHPL+L+ YA LLQ GDL AE+Y+ ATMADP +G
Sbjct: 122 FNPSLEESEDLVGYYKRMADEYPCHPLVLKKYALLLQSNGDLRGAEEYFLRATMADPNEG 181
Query: 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE- 325
E MQYAKLVWE H D+ RA+ YFERA AAPQDSN+LAAY FLW +EDD +D E
Sbjct: 182 EILMQYAKLVWENHHDKDRAMVYFERAVQAAPQDSNVLAAYTTFLWNIEDDENEDGKHEI 241
Query: 326 ----EHIQVLPIQSKGDLEGAE-------------------------------------- 343
E + P++ D G E
Sbjct: 242 QSEMETQKAEPVKPSKDESGQEIDGAHTTTANCGEENNVEDYFKKMLDENPNNPLFLKKY 301
Query: 344 ---------------EYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388
+Y+SRAI+A+P DGE++S+YAKLVWELHHD +KA FE+AVQA+
Sbjct: 302 AQFLLQSKRDLQVAEDYYSRAIVADPSDGEMISEYAKLVWELHHDQEKASFLFEQAVQAT 361
Query: 389 PADSH 393
P D +
Sbjct: 362 PGDRY 366
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432498|ref|XP_004134036.1| PREDICTED: uncharacterized protein LOC101202732 [Cucumis sativus] gi|449487480|ref|XP_004157647.1| PREDICTED: uncharacterized LOC101202732 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 165/386 (42%), Positives = 213/386 (55%), Gaps = 74/386 (19%)
Query: 104 MLRSAPSFEIYS------SVEGVESEEVSLTRTVTIGEDLDGSGISSGDFSFGSKKNMGL 157
ML S SF IY+ + G+E+ E + V E L +G DFSF S++ MGL
Sbjct: 1 MLHSTASFSIYTDDENQEQIMGLEAFEKGVMIEVNKEEVLGSTG---HDFSF-SERAMGL 56
Query: 158 IEEEGEYEEEGLNGIGEEIE---RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDS 214
I+EE +E+GLN ++ E RP SPP+YLA GLG+ G + VD FD+
Sbjct: 57 IQEEEMEDEDGLNRGFDDSEVNLRPASPPLYLAAGLGMDASGLGGGYDSVDF----FDE- 111
Query: 215 AEAEEYYKRMIDEYP-CHPLL-LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
+M+DE P HP L LR+Y Q L +G L AE+ AT+ P DGE+ M Y
Sbjct: 112 --------KMVDETPSIHPSLSLRDYVQSLWSEGKLDEAEEQCYQATITFPEDGETLMLY 163
Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGE------------D 320
A+LVWELH DQ +A +YFERAAL AP +SNILAA A FLWE+ ++ E D
Sbjct: 164 AQLVWELHHDQAKASSYFERAALVAPNNSNILAARAKFLWELNEEDETMIPGEEDSNPVD 223
Query: 321 DKAQEEHIQVLP--------------------------------IQSKGDLEGAEEYFSR 348
+ EE I+ P QSK DL+GAEEY+ R
Sbjct: 224 SSSPEERIEPAPDTGESDMQEYYEKMLKENPTDPLLLKNYARFLQQSKVDLQGAEEYYYR 283
Query: 349 AILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEED 408
I A+P DGE++S+YAKLVWELHHD++KAL FERAV+ SP +S+VL AYA FLWET+E
Sbjct: 284 GIQADPSDGELLSEYAKLVWELHHDYNKALNNFERAVETSPTNSYVLGAYASFLWETDEH 343
Query: 409 EDDSKSSDQFQQVAPIRQGAVTTANV 434
E+D S + Q P AV+ N
Sbjct: 344 EEDGASKNDSQW--PSNTVAVSVGNA 367
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356576440|ref|XP_003556339.1| PREDICTED: uncharacterized protein LOC100783167 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 130/285 (45%), Positives = 168/285 (58%), Gaps = 60/285 (21%)
Query: 184 MYLAMGLGISVP-GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLL 242
MYLA GLG+ GFD D+ P+ ++S + E YYKRM+DEYPCHPL+L+ YAQLL
Sbjct: 1 MYLAAGLGVDADVGFDKFISD-DVFNPSLEESEDLEGYYKRMVDEYPCHPLVLKKYAQLL 59
Query: 243 QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSN 302
Q GDL A++Y+ AT+ADP DGE MQYAKLVWE H D+ RA+ YFERA AAPQDSN
Sbjct: 60 QSNGDLQGAQEYFLQATVADPNDGEILMQYAKLVWENHHDKDRAMVYFERAVQAAPQDSN 119
Query: 303 ILAAYACFLWEMEDDGEDDK------------------AQEEHIQVL-----PIQSKGDL 339
+LAAY FLW +EDD +D+ ++EE QV+ + G+
Sbjct: 120 VLAAYTSFLWNIEDDENEDRKHEIQSDMEIQKTEPVKPSKEESGQVIDAANVTTANFGEE 179
Query: 340 EGAEEYFSR-----------------------------------AILANPGDGEIMSQYA 364
E+Y + A++A+P DGE++S+YA
Sbjct: 180 SNVEDYLKKMVDENPSNPLFLKKYAQFLLQSKRDLQAAEDYYSRAVVADPSDGEMISEYA 239
Query: 365 KLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDE 409
LVWELHHD +KA FE+AVQA+P DS+VLAAY CFLWET++ E
Sbjct: 240 NLVWELHHDQEKASFLFEQAVQATPGDSNVLAAYTCFLWETDDAE 284
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297848682|ref|XP_002892222.1| hypothetical protein ARALYDRAFT_470433 [Arabidopsis lyrata subsp. lyrata] gi|297338064|gb|EFH68481.1| hypothetical protein ARALYDRAFT_470433 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 144/325 (44%), Positives = 192/325 (59%), Gaps = 38/325 (11%)
Query: 104 MLRSAPSFEIY-SSVEGVESE------EVSLTRTVTIGEDLDGSGISSGDFSFGSKKNMG 156
ML+S S Y S +G +SE E +L RTVTIG+ +DG G FSF K
Sbjct: 1 MLKSEASLSSYCDSGDGFKSEDPLTGIEENLERTVTIGDSIDGGG-----FSFAKHKEED 55
Query: 157 LIEEEGEYEEEGLN--GIGE------EIERPVSPPMYLAMGLGISVPGFDDAGEVVDLIM 208
E E EE + GIG+ EIERP SPPM+LA GLGI FD G +
Sbjct: 56 SSEGERGVLEEVIKKLGIGKRDEQGFEIERPPSPPMHLAAGLGIDK--FDLYGNETKFDL 113
Query: 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGES 268
P FDD +YYK M++EYP HPLLL+NYA+ L+ KGDL AE+YY+ T+ +P DG +
Sbjct: 114 PGFDDE-NCGDYYKGMLEEYPLHPLLLKNYAKFLEYKGDLTGAEEYYHKCTVVEPCDGVA 172
Query: 269 WMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI 328
Y +LV +LH+D+ +A++YFERA A+P+DSN+L AYA FLWE+ ++
Sbjct: 173 LANYGRLVMKLHQDEAKAMSYFERAVQASPEDSNVLGAYASFLWEI-------NVDDDDE 225
Query: 329 QVLPIQSKGDLEGAEEYFSRAI------LANPGDGEIMSQYAKLVWELHHDHDKALCYFE 382
+S G +G EE+ A+ L+ DGE + +YAK W +++DH+KAL YFE
Sbjct: 226 DDDDDESSG--KGKEEFEPDAVEKSNSSLSKTEDGETLCRYAKAFWSINNDHEKALFYFE 283
Query: 383 RAVQASPADSHVLAAYACFLWETEE 407
+AV+ASP DS +L YA FLWE EE
Sbjct: 284 KAVEASPNDSIILGEYARFLWEIEE 308
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21555875|gb|AAM63952.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 198/319 (62%), Gaps = 24/319 (7%)
Query: 104 MLRSAPSFEIY-SSVEGVESE------EVSLTRTVTIGEDLDGSGISSGDFSFGSKKNMG 156
ML+S S IY S +G +SE E +L RTVTIG+ +DG G+FSF K
Sbjct: 1 MLKSEASLSIYCDSGDGFKSEDPVTGIEENLERTVTIGDAIDG-----GEFSFAKHKEED 55
Query: 157 LIE-EEGEYEEE----GL---NGIGEEIERPVSPPMYLAMGLGISVPGFDDAGEVVDLIM 208
E E G +EE G+ + +G EIERP SPPM+LA GLGI FD G + +
Sbjct: 56 SGEGERGVFEEVIKKLGIGVRDELGFEIERPPSPPMHLAAGLGIDK--FDLYGSEIKFDL 113
Query: 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGES 268
P +DD +YYK M++EYP HPLLL+NYA+ L+ KGDL AE+YY+ T+ +P DG +
Sbjct: 114 PGYDDK-NCGDYYKGMLEEYPLHPLLLKNYAKFLEYKGDLSGAEEYYHKCTVVEPSDGVA 172
Query: 269 WMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI 328
Y +LV +LH+D+ +A++YFERA A+P DS +LAAYA FLWE+ + +DD+ +E
Sbjct: 173 LANYGRLVMKLHQDEAKAMSYFERAVQASPDDSIVLAAYASFLWEI-NADDDDEDDDEDD 231
Query: 329 QVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388
Q K + E S++ L+ DGE + +YAK W +++DH+KAL YFE+AV+AS
Sbjct: 232 DESSGQGKDEFEADAAGKSKSSLSKTEDGETLCRYAKAFWSINNDHEKALFYFEKAVEAS 291
Query: 389 PADSHVLAAYACFLWETEE 407
P DS +L YA FLWE +E
Sbjct: 292 PNDSIILGEYARFLWEIDE 310
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 436 | ||||||
| TAIR|locus:2197768 | 310 | TPR4 "tetratricopeptide repeat | 0.504 | 0.709 | 0.473 | 1.3e-52 | |
| TAIR|locus:2149314 | 290 | AT5G20190 "AT5G20190" [Arabido | 0.277 | 0.417 | 0.384 | 8.2e-26 | |
| TAIR|locus:2141030 | 274 | AT4G17940 "AT4G17940" [Arabido | 0.266 | 0.423 | 0.418 | 8.7e-24 | |
| TAIR|locus:2127781 | 238 | AT4G32340 "AT4G32340" [Arabido | 0.240 | 0.441 | 0.420 | 8.9e-23 | |
| TAIR|locus:2016229 | 305 | AT1G80130 [Arabidopsis thalian | 0.25 | 0.357 | 0.390 | 1e-20 | |
| TAIR|locus:2060669 | 536 | AT2G29670 [Arabidopsis thalian | 0.259 | 0.210 | 0.355 | 8.5e-09 | |
| TAIR|locus:2025067 | 552 | AT1G07280 "AT1G07280" [Arabido | 0.238 | 0.188 | 0.392 | 1.2e-07 | |
| TAIR|locus:2075616 | 515 | AT3G47080 [Arabidopsis thalian | 0.240 | 0.203 | 0.330 | 3.8e-05 | |
| UNIPROTKB|Q71ZG0 | 222 | LMOf2365_1529 "TPR domain prot | 0.408 | 0.801 | 0.271 | 0.00097 |
| TAIR|locus:2197768 TPR4 "tetratricopeptide repeat 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 108/228 (47%), Positives = 149/228 (65%)
Query: 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRN 237
RP SPPM+LA GLGI FD G + +P +DD +YYK M++EYP HPLLL+N
Sbjct: 85 RPPSPPMHLAAGLGIDK--FDLYGSEIKFDLPGYDDK-NCGDYYKGMLEEYPLHPLLLKN 141
Query: 238 YAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA 297
YA+ L+ KGDL AE+YY+ T+ +P DG + Y +LV +LH+D+ +A++YFERA A+
Sbjct: 142 YAKFLEYKGDLSGAEEYYHKCTVVEPSDGVALANYGRLVMKLHQDEAKAMSYFERAVQAS 201
Query: 298 PQDSNILAAYACFLWEM--EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355
P DS +LAAYA FLWE+ +DD EDD ++ Q K + E ++ L+
Sbjct: 202 PDDSIVLAAYASFLWEINADDDDEDDDEDDDESSG---QGKDEFEADAAGKGKSSLSKTE 258
Query: 356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLW 403
DGE + +YAK W +++DH+KAL YFE+AV+ASP DS +L YA FLW
Sbjct: 259 DGETLCRYAKAFWSINNDHEKALFYFEKAVEASPNDSIILGEYARFLW 306
|
|
| TAIR|locus:2149314 AT5G20190 "AT5G20190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 247 (92.0 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
Identities = 48/125 (38%), Positives = 79/125 (63%)
Query: 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-KGDLYRAEDYYNHATMADPGDGESWM 270
DD+ + +Y++MI+ P + + L NYA+ L++ + D +AE+Y A + P DG
Sbjct: 153 DDNTDV--HYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLA 210
Query: 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV 330
YA+LVW++H+D RA YF +A AAP+D + A+YA FLW+ E++ E++K +E H +
Sbjct: 211 MYAELVWKIHKDSSRAENYFNQAVAAAPEDCYVQASYARFLWDAEEEEEEEK-EERHEEE 269
Query: 331 LPIQS 335
L Q+
Sbjct: 270 LEHQT 274
|
|
| TAIR|locus:2141030 AT4G17940 "AT4G17940" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 49/117 (41%), Positives = 76/117 (64%)
Query: 211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-KGDLYRAEDYYNHATMADPGDGESW 269
++D ++ +YY+ M+ P + LLL NY + L + + D AE+YY A + +PGDGE+
Sbjct: 144 YEDKSKIGDYYREMLRSNPNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEAL 203
Query: 270 MQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE 326
Y +L+WE RD+ RA YF++A A+P D +L +YA F+WE EDD +DD+ +EE
Sbjct: 204 SMYGRLIWETKRDEKRAQGYFDQAVNASPNDCMVLGSYARFMWEAEDDDDDDEEEEE 260
|
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| TAIR|locus:2127781 AT4G32340 "AT4G32340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 236 (88.1 bits), Expect = 8.9e-23, Sum P(2) = 8.9e-23
Identities = 45/107 (42%), Positives = 72/107 (67%)
Query: 220 YYKRMIDEYPCHPLLLRNYAQLLQK-KGDLYRAEDYYNHATMADPG-DGESWMQYAKLVW 277
YY+ MI YP LLL NYA+ L++ KGD +AE+Y A +++ G DGE Y L+W
Sbjct: 113 YYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLSMYGDLIW 172
Query: 278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ 324
+ H D RA +Y+++A ++P D N+LA+YA FLW+ E++ E+++++
Sbjct: 173 KNHGDGVRAQSYYDQAVQSSPDDCNVLASYARFLWDAEEEVEEEESK 219
|
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| TAIR|locus:2016229 AT1G80130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 225 (84.3 bits), Expect = 1.0e-20, Sum P(2) = 1.0e-20
Identities = 43/110 (39%), Positives = 70/110 (63%)
Query: 218 EEYYKRMIDEYPCHPLLLRNYAQLLQK-KGDLYRAEDYYNHATMADPGDGESWMQYAKLV 276
+ YY+ MID P + LL NYA+ L++ KGD+ +AE+Y A + + DG YA L+
Sbjct: 166 DTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYADLI 225
Query: 277 WELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE 326
H+D+ RA +Y+++A +P+D + A+YA FLW++++D ED+ EE
Sbjct: 226 LHNHQDRQRAHSYYKQAVKMSPEDCYVQASYARFLWDVDEDEEDEALGEE 275
|
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| TAIR|locus:2060669 AT2G29670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 161 (61.7 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 42/118 (35%), Positives = 58/118 (49%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQK-KGDLYRAEDYYNHATMADPGDGESWMQYAK 274
+ E Y+ + + P +PLLL NYAQ L D RAE+Y+ A +P D E++ +YA
Sbjct: 419 KTELMYQTELSQEPNNPLLLANYAQFLYLVSNDHDRAEEYFKRAVGVEPKDAEAFSKYAT 478
Query: 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGE----DDKAQEEHI 328
+W D A F A A P +S A YA FLW D DD++ E+ I
Sbjct: 479 FLWRARDDLWAAEETFLEAIDADPTNSYYAANYANFLWNTGGDDTCFPLDDESHEDTI 536
|
|
| TAIR|locus:2025067 AT1G07280 "AT1G07280" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 151 (58.2 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 42/107 (39%), Positives = 53/107 (49%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKK-GDLYRAEDYYNHATMADPGDGESWMQ 271
D + E Y+ + + P + LLL NYAQ L D RAE Y+ A A+P D E+ +
Sbjct: 431 DYFKTELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNK 490
Query: 272 YAKLVWELHRDQHRAL-TYFERAALAAPQDSNILAAYACFLWEMEDD 317
YA +W D RA TY E A A P +S A YA FLW D
Sbjct: 491 YATFLWRARNDIWRAEETYLE-AISADPTNSVYSANYAHFLWNTGGD 536
|
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| TAIR|locus:2075616 AT3G47080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 128 (50.1 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 35/106 (33%), Positives = 53/106 (50%)
Query: 208 MPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-KGDLYRAEDYYNHATMADPGDG 266
+ ++ + E YK + + P + LLL NYAQ L D RAE+ + A ++ D
Sbjct: 391 LDDYANYTRTELLYKIGLAQEPDNHLLLANYAQFLYLVTQDHERAENCFKKAIESEDVDA 450
Query: 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW 312
E++ +YA +W++ D A F A A P +S A YA FLW
Sbjct: 451 ETYSKYAIFLWKVRNDLWAAEENFLEAISADPTNSFYAANYANFLW 496
|
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| UNIPROTKB|Q71ZG0 LMOf2365_1529 "TPR domain protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] | Back alignment and assigned GO terms |
|---|
Score = 109 (43.4 bits), Expect = 0.00097, P = 0.00097
Identities = 54/199 (27%), Positives = 83/199 (41%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
EA + + +I+E+P P+ N+ +L D RAE ++ A D ++ L
Sbjct: 18 EAVKLFTEVIEEHPSDPVGYINFGNVLLSMDDFERAELFFKRALELDDTVPAAYYSLGNL 77
Query: 276 VWELHRDQHRALTY-------------FERAALAAPQDSNILAAYACFLWEMEDDGEDDK 322
+EL R Q A ++ F ++ Q + A L +E + ED +
Sbjct: 78 YYELERYQEAADSFQNATKQGMENGDLFFMLGMSFVQMEELTLAMPYLLRSVELNPEDGE 137
Query: 323 AQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQY--AKLVWELHHDHDKALCY 380
A ++ VL G E A R +L P D + + A L W+ D A Y
Sbjct: 138 ALFQYGIVLA--RSGFYEDAINMLERVLLVKPEDPDALYNIGAAYLAWQ--GDIVLAKNY 193
Query: 381 FERAVQASPADSHVLAAYA 399
FERA+ A+ A SH LA A
Sbjct: 194 FERAI-ATGA-SHELAENA 210
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.131 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 436 358 0.00081 117 3 11 22 0.41 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 9
No. of states in DFA: 616 (65 KB)
Total size of DFA: 260 KB (2137 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.27u 0.15s 28.42t Elapsed: 00:00:01
Total cpu time: 28.27u 0.15s 28.42t Elapsed: 00:00:01
Start: Tue May 21 08:38:23 2013 End: Tue May 21 08:38:24 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00020351001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (533 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 436 | |||
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 3e-07 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 1e-06 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-05 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 2e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-05 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 4e-05 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 3e-04 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 4e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 5e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 6e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 0.001 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.004 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 0.004 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-07
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389
GD + A E + +A+ +P + E A +L D+++AL E+A++ P
Sbjct: 15 KLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69
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Length = 69 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.8 bits (117), Expect = 1e-06
Identities = 52/244 (21%), Positives = 93/244 (38%), Gaps = 25/244 (10%)
Query: 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCH--PLLLRNYAQLLQKKGDLYRAEDYYNHA- 258
E ++ + AEA E + ++ P LL A L K G L A + A
Sbjct: 27 EAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKAL 86
Query: 259 -TMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDD 317
P E+ + L+ L AL E+A P A A L + +
Sbjct: 87 ELELLPNLAEALLNLGLLLEAL-GKYEEALELLEKALALDPDPDLAEALLA--LGALYEL 143
Query: 318 GEDDKAQEEHIQVLPI------------------QSKGDLEGAEEYFSRAILANPGDGEI 359
G+ ++A E + + L + ++ G E A E +A+ NP D
Sbjct: 144 GDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAE 203
Query: 360 MSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQ 419
L++ +++AL Y+E+A++ P ++ L A L E E+ ++ ++
Sbjct: 204 ALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263
Query: 420 QVAP 423
++ P
Sbjct: 264 ELDP 267
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Length = 291 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-06
Identities = 20/67 (29%), Positives = 28/67 (41%)
Query: 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFE 291
L+N L K GD A + Y A DP + E++ A +L +D AL E
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62
Query: 292 RAALAAP 298
+A P
Sbjct: 63 KALELDP 69
|
Length = 69 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
D EA EYY++ ++ P + N A K G A + Y A DP + +++
Sbjct: 15 DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNL 74
Query: 273 AKLVWELHRDQHRALTYFERA 293
++L + + AL +E+A
Sbjct: 75 GLAYYKLGKYE-EALEAYEKA 94
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-05
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERA 293
L N L K GD A +YY A DP + +++ A ++L AL +E+A
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLG-KYEEALEDYEKA 60
Query: 294 ALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK 336
P ++ +++ G+ ++A E + + L +
Sbjct: 61 LELDPDNAKAYYNLGLAYYKL---GKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 22/165 (13%)
Query: 244 KKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNI 303
++GDL A++ + A DP D +++ A L ++ + +A F RA P + ++
Sbjct: 43 EQGDLEVAKENLDKALEHDPDDYLAYLALA-LYYQQLGELEKAEDSFRRALTLNPNNGDV 101
Query: 304 LAAYACFLWEMEDDGEDDKAQEEHIQVL-----PIQSK------------GDLEGAEEYF 346
L Y FL + G+ ++A ++ Q + P ++ GD + AE+Y
Sbjct: 102 LNNYGTFLCQQ---GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158
Query: 347 SRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391
+RA+ +P E + + A+L + D A Y ER Q
Sbjct: 159 TRALQIDPQRPESLLELAELYYLRGQYKD-ARAYLERYQQTYNQT 202
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 46/235 (19%), Positives = 86/235 (36%), Gaps = 26/235 (11%)
Query: 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG 266
I D A+A E +++ + P N A++ ++G+ A + DP +
Sbjct: 474 IYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL 533
Query: 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSN---ILAAYACFLWEMEDDGEDDKA 323
+ + A L + ++ A+ + E+AA PQ+ LA Y G+ KA
Sbjct: 534 RAILALAGL-YLRTGNEEEAVAWLEKAAELNPQEIEPALALAQY------YLGKGQLKKA 586
Query: 324 -------------QEEHIQVL--PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVW 368
E +L + GDL A F + + P + A +
Sbjct: 587 LAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD-AY 645
Query: 369 ELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423
+ ++ KA+ +RA++ P ++ A L + E K + Q+ P
Sbjct: 646 AVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP 700
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 3/100 (3%)
Query: 211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWM 270
+ + EA E K+ + P PLL N AQ L K G A N DP D W
Sbjct: 353 ANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGW- 411
Query: 271 QYAKLVWELHRDQHRA-LTYFERAALA-APQDSNILAAYA 308
+ ++ A L E ALA + + I A
Sbjct: 412 DLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRA 451
|
Length = 484 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 2e-04
Identities = 14/77 (18%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 334 QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSH 393
GD + A EY+ +A+ +P + + A +++AL +E+A++ P ++
Sbjct: 11 YKLGDYDEALEYYEKALELDPDNADAYYNLAAAY-YKLGKYEEALEDYEKALELDPDNAK 69
Query: 394 VLAAYACFLWETEEDED 410
++ + E+
Sbjct: 70 AYYNLGLAYYKLGKYEE 86
|
Length = 100 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 3e-04
Identities = 15/53 (28%), Positives = 20/53 (37%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD 265
D EA + + YP L + L ++G L A A ADP D
Sbjct: 12 DYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDD 64
|
Length = 65 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 16/115 (13%)
Query: 286 ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY 345
AL Y E+ L ++ N+ A +E D +D A L Q G+LE AE+
Sbjct: 38 ALGYLEQGDLEVAKE-NLDKA-------LEHDPDDYLAY--LALALYYQQLGELEKAEDS 87
Query: 346 FSRAILANPGDGEIMSQYAKLVWELHH--DHDKALCYFERAVQASPADSHVLAAY 398
F RA+ NP +G++++ Y L +++A+ FE+A+ P +
Sbjct: 88 FRRALTLNPNNGDVLNNYG---TFLCQQGKYEQAMQQFEQAI-EDPLYPQPARSL 138
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 5e-04
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYR-AEDYYNHATMADP 263
EA E Y++ ++ P + N A K G Y A + A DP
Sbjct: 20 DEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 6e-04
Identities = 13/52 (25%), Positives = 19/52 (36%)
Query: 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP 263
EA E Y++ ++ P + N K G A + Y A DP
Sbjct: 48 GKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.001
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Query: 239 AQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAP 298
A+ + GD A A P E+ + + + R A A A P
Sbjct: 4 ARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLA-EAAALLRAALAADP 62
Query: 299 QDS 301
D
Sbjct: 63 DDP 65
|
Length = 65 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 36.2 bits (84), Expect = 0.004
Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 23/104 (22%)
Query: 286 ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY 345
AL Y+E+A P +++ A G E A E
Sbjct: 19 ALEYYEKALELDPDNADAYYNLAAAY----------------------YKLGKYEEALED 56
Query: 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389
+ +A+ +P + + ++L +++AL +E+A++ P
Sbjct: 57 YEKALELDPDNAKAYYNLGLAYYKLG-KYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 42/192 (21%), Positives = 68/192 (35%), Gaps = 20/192 (10%)
Query: 223 RMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYA--KLVWELH 280
+ P P L + GD +A +Y AT DP + + Q KL
Sbjct: 354 PALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKL---SQ 410
Query: 281 RDQHRALTYFERAALAAPQDSNI-LAAYACFLWEMEDD-----------GEDDKAQEEHI 328
D A+ E AA P+ L +L + D + D A ++
Sbjct: 411 GDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNL 470
Query: 329 QVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDH-DKALCYFERAVQA 387
KGDL A E F +A+ P + A++ ++ + D A+ FE+ +
Sbjct: 471 LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARI--DIQEGNPDDAIQRFEKVLTI 528
Query: 388 SPADSHVLAAYA 399
P + + A A
Sbjct: 529 DPKNLRAILALA 540
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 436 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.97 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.9 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.88 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.88 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.87 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.87 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.86 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.86 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.86 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.85 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.85 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.84 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.81 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.81 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.81 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.8 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.79 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.79 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.79 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.79 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.78 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.78 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.78 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.76 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.76 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.76 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.76 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.75 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.75 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.74 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.73 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.72 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.72 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.72 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.72 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.7 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.69 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.69 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.68 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.68 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.68 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.68 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.67 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.67 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.66 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.63 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.63 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.63 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.62 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.61 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.61 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.6 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.6 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.6 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.59 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.59 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.59 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.58 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.57 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.56 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.55 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.54 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.54 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.53 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.52 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.52 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.49 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.48 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.47 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.46 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.44 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.44 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.43 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.43 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.42 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.42 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.42 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.41 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.41 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.39 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.39 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.39 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.38 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.37 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.36 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.35 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.31 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.31 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.3 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.3 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.29 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.29 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.28 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.26 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.26 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.24 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.24 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.22 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.16 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.16 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.15 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.15 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.14 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.14 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.14 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.14 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.13 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.13 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.12 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.12 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.11 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.1 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.1 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.1 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.1 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.09 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.08 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.07 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.07 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.07 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 99.07 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.07 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.05 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.05 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.05 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.04 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.0 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.0 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.99 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.99 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.98 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.97 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.95 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.95 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.94 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.93 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.93 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.92 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.91 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.9 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.9 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.86 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.85 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.84 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.84 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.84 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.83 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.82 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.8 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.8 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.78 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.77 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.76 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.74 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.73 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.72 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.69 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.68 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.67 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.67 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.66 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.64 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.63 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.6 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.6 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.59 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.54 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.54 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.52 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.51 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.49 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.48 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.47 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.47 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.47 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.46 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.43 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.42 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.41 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.41 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.41 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.38 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.37 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.35 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.34 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.34 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.31 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.24 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.23 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.23 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.21 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.18 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.18 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 98.16 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.13 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.13 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.08 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.08 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 98.05 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.0 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 98.0 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.97 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.97 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.96 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.95 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.94 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.91 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.87 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.87 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.82 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.82 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.81 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.81 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.8 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.79 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.74 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.72 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.72 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.71 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.69 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.68 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.66 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.65 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.64 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.63 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.61 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.61 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.59 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.54 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.53 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.51 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.51 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.44 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.44 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.4 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.39 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.37 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.33 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.31 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.25 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 97.24 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.23 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.22 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.2 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 97.2 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.2 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.13 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.12 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 97.05 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 96.98 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.98 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.95 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.95 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.94 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.92 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 96.87 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.87 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.83 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.78 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.77 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 96.73 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.7 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 96.69 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.62 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.61 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.54 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.5 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.5 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 96.46 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.43 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 96.42 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.38 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 96.28 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.28 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.27 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.25 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 96.23 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.21 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.1 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.05 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 96.05 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 96.02 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 95.98 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 95.94 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 95.94 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.87 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.84 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.82 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.79 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 95.65 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.65 | |
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 95.64 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 95.63 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 95.63 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 95.52 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 95.51 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 95.49 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 95.44 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 95.38 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 95.35 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 95.15 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 95.12 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 95.11 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 95.04 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.99 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 94.88 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 94.74 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 94.62 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 94.58 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 94.52 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.47 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 94.44 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 94.32 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 94.31 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 94.3 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 94.27 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.22 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 94.22 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 94.14 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 94.07 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.96 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 93.93 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 93.91 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 93.86 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.8 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 93.72 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 93.51 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 93.49 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 93.4 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 93.36 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 93.33 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 93.25 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.15 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.97 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 92.94 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 92.81 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 92.48 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 92.32 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.09 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 92.0 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 91.93 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 91.89 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.13 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 91.03 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 90.87 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 90.82 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 90.68 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 90.58 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 90.54 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 90.29 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 90.25 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 89.95 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 89.9 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 89.78 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.74 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.63 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.14 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 89.13 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 88.79 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 88.69 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 88.55 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 88.27 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 88.09 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 88.09 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 87.99 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 87.89 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 87.87 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.86 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.67 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 87.59 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 86.8 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 86.28 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 85.54 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 85.29 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 85.21 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 84.7 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 84.35 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.03 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 83.97 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 83.73 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 83.41 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.0 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 82.98 | |
| smart00101 | 244 | 14_3_3 14-3-3 homologues. 14-3-3 homologues mediat | 82.36 | |
| KOG0889 | 3550 | consensus Histone acetyltransferase SAGA, TRRAP/TR | 82.31 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.72 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 80.8 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=267.37 Aligned_cols=247 Identities=16% Similarity=0.160 Sum_probs=240.6
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
.+..+|..++.+++ .+.++|+++|+++-..+.+++|+.+|.+++.+.|.++.++-++|.+|+.+|..+-|+..|+++++
T Consensus 236 ~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~ 314 (966)
T KOG4626|consen 236 LAIQHYEEAVKLDP-NFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE 314 (966)
T ss_pred HHHHHHHHhhcCCC-cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHh
Confidence 67788999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------
Q 013800 261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV---------- 330 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------- 330 (436)
+.|..+.++.++|..+-..|. ..+|+.+|.+++.+.|+++++.++||.++.++|.++.|..+|..++..
T Consensus 315 ~~P~F~~Ay~NlanALkd~G~-V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nN 393 (966)
T KOG4626|consen 315 LQPNFPDAYNNLANALKDKGS-VTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNN 393 (966)
T ss_pred cCCCchHHHhHHHHHHHhccc-hHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhh
Confidence 999999999999999998875 999999999999999999999999999999999999999999988876
Q ss_pred --hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q 013800 331 --LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEED 408 (436)
Q Consensus 331 --~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 408 (436)
.+|.++|++++|+.+|+.+|++.|..++++.++|..|..+|+ .+.|+.+|.+|++++|...+++.+||.+|...|+.
T Consensus 394 La~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~-v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni 472 (966)
T KOG4626|consen 394 LASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD-VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNI 472 (966)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh-HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCc
Confidence 889999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChhHHh
Q 013800 409 EDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 409 ~~A~~~~~~al~l~p~~~~a~~ 430 (436)
.+|+..|+.++.+.|+|+++..
T Consensus 473 ~~AI~sY~~aLklkPDfpdA~c 494 (966)
T KOG4626|consen 473 PEAIQSYRTALKLKPDFPDAYC 494 (966)
T ss_pred HHHHHHHHHHHccCCCCchhhh
Confidence 9999999999999999999865
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=254.19 Aligned_cols=255 Identities=15% Similarity=0.119 Sum_probs=242.3
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
.-.+|...|.+++...+ .++.+|.++|-++...|+...|+..|++++.++|...++|++||.+|...+.+++|+..|.+
T Consensus 199 rl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 199 RLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred ccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 34577888999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
|+.+.|..+.++-++|.+|+++|. .+-|+.+|+++++++|+.++++.++|.++.+.|+..+|.+.|.+++..
T Consensus 278 Al~lrpn~A~a~gNla~iYyeqG~-ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hada 356 (966)
T KOG4626|consen 278 ALNLRPNHAVAHGNLACIYYEQGL-LDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADA 356 (966)
T ss_pred HHhcCCcchhhccceEEEEecccc-HHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHH
Confidence 999999999999999999999975 999999999999999999999999999999999999999999988876
Q ss_pred -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013800 331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET 405 (436)
Q Consensus 331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 405 (436)
.++.++|.+++|...|+++++..|+.+.++.+||.+|.++|+ +++|+.+|+.++.+.|...+++.++|.+|..+
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn-l~~Ai~~YkealrI~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN-LDDAIMCYKEALRIKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc-HHHHHHHHHHHHhcCchHHHHHHhcchHHHHh
Confidence 889999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCChhHHh-hhhhc
Q 013800 406 EEDEDDSKSSDQFQQVAPIRQGAVT-TANVY 435 (436)
Q Consensus 406 g~~~~A~~~~~~al~l~p~~~~a~~-~an~y 435 (436)
|+.+.|+.+|.+++.++|.|.++.. +|.+|
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIY 466 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHh
Confidence 9999999999999999999988766 44443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=221.12 Aligned_cols=247 Identities=13% Similarity=0.044 Sum_probs=221.2
Q ss_pred CCChHHHHHhhcCCCC--CCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 179 PVSPPMYLAMGLGISV--PGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 179 p~~a~~~~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
+.++..++..++.... .....+|..+|.++...|++++|+..|+++++.+|++...|+.+|.++...|++++|+..|+
T Consensus 310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~ 389 (615)
T TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFD 389 (615)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4456667777776542 15667899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------
Q 013800 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------ 330 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------ 330 (436)
++++.+|+++.+++.+|.+++..++ +++|+.+|+++++++|++..++.++|.++...|++++|+..+.+++..
T Consensus 390 ~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~ 468 (615)
T TIGR00990 390 KALKLNSEDPDIYYHRAQLHFIKGE-FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPD 468 (615)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH
Confidence 9999999999999999999999875 999999999999999999999999999999999999999999988875
Q ss_pred ------hHHHHcCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 331 ------LPIQSKGDLEGAEEYFSRAILANPGDGEI------MSQYAKLVWE-LHHDHDKALCYFERAVQASPADSHVLAA 397 (436)
Q Consensus 331 ------~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~la~~~~~-~g~d~~~A~~~~~~al~~~p~~~~~~~~ 397 (436)
.++...|++++|+..|++++++.|.+... +.+.+.+++. .|+ +++|+.+|+++++++|++..++..
T Consensus 469 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~-~~eA~~~~~kAl~l~p~~~~a~~~ 547 (615)
T TIGR00990 469 VYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD-FIEAENLCEKALIIDPECDIAVAT 547 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhcCCCcHHHHHH
Confidence 78889999999999999999999875332 3334444544 577 999999999999999999999999
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 398 YACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 398 la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
+|.++..+|++++|+.+|++++++.+...+
T Consensus 548 la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 548 MAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999999999875433
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-23 Score=217.52 Aligned_cols=245 Identities=11% Similarity=0.032 Sum_probs=216.1
Q ss_pred cCCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
.++..|..+|.+++.+.+ . ...|.++|.++..+|++++|+..++++++++|++..+|+.+|.+|..+|++++|+..|.
T Consensus 141 ~~~~~Ai~~y~~al~~~p-~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~ 218 (615)
T TIGR00990 141 KDFNKAIKLYSKAIECKP-D-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLT 218 (615)
T ss_pred CCHHHHHHHHHHHHhcCC-c-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 467789999999999988 3 67899999999999999999999999999999999999999999999999988876543
Q ss_pred HHH-----------------------------------------------------------------------------
Q 013800 257 HAT----------------------------------------------------------------------------- 259 (436)
Q Consensus 257 ~al----------------------------------------------------------------------------- 259 (436)
.++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (615)
T TIGR00990 219 ASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLG 298 (615)
T ss_pred HHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHH
Confidence 322
Q ss_pred -----------------------Hh---CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 260 -----------------------MA---DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWE 313 (436)
Q Consensus 260 -----------------------~~---~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 313 (436)
.. .|....++..+|.+++..++ +++|+.+|++++.++|++...++.+|.++..
T Consensus 299 ~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~-~~eA~~~~~kal~l~P~~~~~~~~la~~~~~ 377 (615)
T TIGR00990 299 LKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGK-HLEALADLSKSIELDPRVTQSYIKRASMNLE 377 (615)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 11 24455567778888777764 9999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 013800 314 MEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYF 381 (436)
Q Consensus 314 ~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~ 381 (436)
.|++++|...+++++.. .++...|++++|+.+|+++++++|++..++..+|.++..+|+ +++|+..|
T Consensus 378 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~-~~eA~~~~ 456 (615)
T TIGR00990 378 LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS-IASSMATF 456 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 99999999999888776 778889999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 382 ERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 382 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
++++...|.++.++..+|.++..+|++++|++.|++++.+.|..
T Consensus 457 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 457 RRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999998764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=214.28 Aligned_cols=246 Identities=12% Similarity=0.066 Sum_probs=163.3
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
++..+...+...+...+ ....++..+|......|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++
T Consensus 57 ~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~ 135 (656)
T PRK15174 57 ETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQ 135 (656)
T ss_pred CcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55566666666666666 56667777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
+++++|+++.++..++.++...++ +++|+..+++++...|++..++..++ .+...|++++|...+.+.+..
T Consensus 136 Al~l~P~~~~a~~~la~~l~~~g~-~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~ 213 (656)
T PRK15174 136 AWLAFSGNSQIFALHLRTLVLMDK-ELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQE 213 (656)
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchh
Confidence 777777777777777777666654 77777777777777777776665543 356666666666666554332
Q ss_pred ------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 331 ------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDK----ALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 331 ------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~----A~~~~~~al~~~p~~~~~~~~la~ 400 (436)
.++...|++++|+..|+++++.+|+++.++..+|.++...|+ +++ |+..|+++++++|++..++..+|.
T Consensus 214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~-~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~ 292 (656)
T PRK15174 214 SAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR-SREAKLQAAEHWRHALQFNSDNVRIVTLYAD 292 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-chhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 334455666666666666666666666666666666666665 553 556666666666666666666666
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 401 FLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
++...|++++|+..+++++++.|+...
T Consensus 293 ~l~~~g~~~eA~~~l~~al~l~P~~~~ 319 (656)
T PRK15174 293 ALIRTGQNEKAIPLLQQSLATHPDLPY 319 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 666666666666666666666555544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-22 Score=208.84 Aligned_cols=244 Identities=13% Similarity=0.064 Sum_probs=147.8
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+++.+...+.+.+.++| +++.+|..+|.++...|++++|+..|+++++++|++..++..++.++...|++++|+..+++
T Consensus 91 ~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 91 QPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 55577788888888888 78888999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCchHHHHHHHHHHHH------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ-DSNILAAYACFLWEMEDDGEDDKAQEEHIQV------ 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------ 330 (436)
++...|+++.++..++. +...+ ++++|+..++++++.+|. +......++.++...|++++|+..+.+++..
T Consensus 170 ~~~~~P~~~~a~~~~~~-l~~~g-~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~ 247 (656)
T PRK15174 170 QAQEVPPRGDMIATCLS-FLNKS-RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAA 247 (656)
T ss_pred HHHhCCCCHHHHHHHHH-HHHcC-CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence 88888887776655432 33332 355555555554444432 2222233344444444444444444444332
Q ss_pred ------hHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 331 ------LPIQSKGDLEG----AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 331 ------~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~ 400 (436)
.++...|++++ |+..|+++++++|+++.++..+|.++...|+ +++|+..++++++++|+++.++..++.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~-~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ-NEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 33344444442 4444444444444444444444444444444 444444444444444444444444444
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 401 FLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
++...|++++|+..|++++...|..
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccc
Confidence 4444444444444444444444443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.3e-23 Score=202.15 Aligned_cols=208 Identities=15% Similarity=0.121 Sum_probs=197.8
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
..+.+|..+|+++--+++++.|+++|+++++++|..+.+|..+|.=+....++|.|..+|++|+..+|.+-.+|+.+|.+
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTV 498 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
|.++++ ++.|+-.|++|++++|.+......+| ..+.+.|+.++|+.+|++|+.++|.
T Consensus 499 y~Kqek-~e~Ae~~fqkA~~INP~nsvi~~~~g----------------------~~~~~~k~~d~AL~~~~~A~~ld~k 555 (638)
T KOG1126|consen 499 YLKQEK-LEFAEFHFQKAVEINPSNSVILCHIG----------------------RIQHQLKRKDKALQLYEKAIHLDPK 555 (638)
T ss_pred eeccch-hhHHHHHHHhhhcCCccchhHHhhhh----------------------HHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 999986 99999999999999999999998888 8899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 356 ~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
++-..+..|.+++.+++ +++|+..+++..++.|++..+++.+|.+|.++|+.+.|+..|--|+.++|.-..
T Consensus 556 n~l~~~~~~~il~~~~~-~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGR-YVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred CchhHHHHHHHHHhhcc-hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999 999999999999999999999999999999999999999999999999987655
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-22 Score=188.26 Aligned_cols=222 Identities=17% Similarity=0.201 Sum_probs=207.5
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH 280 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 280 (436)
+...|..++-.|++-.|...|+.+|.++|.+...|..+|.+|....+.++-...|.+|..++|+++.+|+++|.+++-++
T Consensus 329 l~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 329 LLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred HHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHH
Confidence 33444588888999999999999999999999989999999999999999999999999999999999999999999998
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHH
Q 013800 281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~ 348 (436)
+ |++|+..|++++.++|++...+.+++.++++++.+++++..+++++++ .++..+++|++|++.|..
T Consensus 409 q-~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 409 Q-YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred H-HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 5 999999999999999999999999999999999999999999999988 888899999999999999
Q ss_pred HHHhCCC------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 349 AILANPG------DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 349 al~~~p~------~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
++++.|. ++..+.+.|.+..+..+|+.+|+.++++|++++|....++..||.+..++|+.++|+++|+++..+.
T Consensus 488 ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 488 AIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999 7778888888888777779999999999999999999999999999999999999999999998875
Q ss_pred C
Q 013800 423 P 423 (436)
Q Consensus 423 p 423 (436)
.
T Consensus 568 r 568 (606)
T KOG0547|consen 568 R 568 (606)
T ss_pred H
Confidence 3
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-21 Score=214.40 Aligned_cols=213 Identities=15% Similarity=0.154 Sum_probs=173.6
Q ss_pred cCCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHH
Q 013800 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPL--------------LLRNYAQLL 242 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~--------------~~~~la~~~ 242 (436)
.+++++..++..++...+ .++.++..+|.++...|++++|+.+|+++++.+|++.. ....+|.++
T Consensus 283 g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 356688899999999999 78999999999999999999999999999999997642 224558888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH
Q 013800 243 QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK 322 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 322 (436)
...|++++|+..|+++++++|.++.++..+|.++...++ +++|+++|+++++++|++..++..++.++.. ++.++|..
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~-~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~-~~~~~A~~ 439 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD-YAAAERYYQQALRMDPGNTNAVRGLANLYRQ-QSPEKALA 439 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCHHHHHH
Confidence 999999999999999999999999999999999998875 9999999999999999999999888887643 45666666
Q ss_pred HHHHHHH---------------------HhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 013800 323 AQEEHIQ---------------------VLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYF 381 (436)
Q Consensus 323 ~~~~~~~---------------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~ 381 (436)
.++.... ..++...|++++|+..|+++++++|+++.+++.+|.++...|+ +++|+..|
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~-~~~A~~~l 518 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ-RSQADALM 518 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 5542110 0445667777777777777777777777777777777777777 77777777
Q ss_pred HHHHHhCCCCHH
Q 013800 382 ERAVQASPADSH 393 (436)
Q Consensus 382 ~~al~~~p~~~~ 393 (436)
+++++..|+++.
T Consensus 519 ~~al~~~P~~~~ 530 (1157)
T PRK11447 519 RRLAQQKPNDPE 530 (1157)
T ss_pred HHHHHcCCCCHH
Confidence 777777666554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-21 Score=214.38 Aligned_cols=245 Identities=15% Similarity=0.126 Sum_probs=216.4
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH----------------
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQL---------------- 241 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~---------------- 241 (436)
++.++..++.+++.+++ .+..++..+|.++...|++++|+++|+++++.+|++..++..++.+
T Consensus 366 ~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l 444 (1157)
T PRK11447 366 NLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASL 444 (1157)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 45577888999999998 7888999999999999999999999999999999988776555444
Q ss_pred --------------------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 242 --------------------------LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAAL 295 (436)
Q Consensus 242 --------------------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~ 295 (436)
+...|++++|++.|+++++++|+++.+++.+|.++...++ +++|+..|+++++
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~-~~~A~~~l~~al~ 523 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ-RSQADALMRRLAQ 523 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence 4467999999999999999999999999999999999875 9999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCchHHHHHHHHHH----------------------------------------HH-----
Q 013800 296 AAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI----------------------------------------QV----- 330 (436)
Q Consensus 296 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~----------------------------------------~~----- 330 (436)
..|+++.+++.++.++...++.++|+..+++.. ..
T Consensus 524 ~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~ 603 (1157)
T PRK11447 524 QKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPST 603 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCc
Confidence 999999999988888888888777776654210 00
Q ss_pred -------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 331 -------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLW 403 (436)
Q Consensus 331 -------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 403 (436)
.++.+.|++++|+..|+++++.+|+++.++..++.++...|+ +++|++.|+++++..|++..++..+|.++.
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~-~~eA~~~l~~ll~~~p~~~~~~~~la~~~~ 682 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD-LAAARAQLAKLPATANDSLNTQRRVALAWA 682 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 667888999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HCCChHHHHHHHHHHHhhCCCC
Q 013800 404 ETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 404 ~~g~~~~A~~~~~~al~l~p~~ 425 (436)
.+|++++|+++|++++...|..
T Consensus 683 ~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 683 ALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred hCCCHHHHHHHHHHHhhhCccC
Confidence 9999999999999999886554
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-20 Score=202.78 Aligned_cols=242 Identities=13% Similarity=0.113 Sum_probs=151.2
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
++..++..++...+ .....+..++.++...|++++|+.++++++...|.+..+|..+|.++...|++++|+..|+++++
T Consensus 551 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 551 EAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444 34455666666666667777777777777766676677777777777777777777777777777
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------
Q 013800 261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV---------- 330 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------- 330 (436)
.+|.++.++..+|.++...++ +++|+.+|+++++.+|++..++..++.++...|++++|...+......
T Consensus 630 ~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 708 (899)
T TIGR02917 630 LQPDSALALLLLADAYAVMKN-YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFEL 708 (899)
T ss_pred hCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHH
Confidence 777777777777777666653 777777777777777776666666666666666666666666544432
Q ss_pred --hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q 013800 331 --LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEED 408 (436)
Q Consensus 331 --~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 408 (436)
.++...|++++|+..|++++...|++ ..+..++.++...|+ +++|+..++++++..|++..++..+|.++..+|++
T Consensus 709 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 709 EGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGN-TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 44555566666666666666555554 445555555555555 55555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhhCCCCh
Q 013800 409 EDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 409 ~~A~~~~~~al~l~p~~~ 426 (436)
++|+..|+++++..|+..
T Consensus 787 ~~A~~~~~~~~~~~p~~~ 804 (899)
T TIGR02917 787 DKAIKHYRTVVKKAPDNA 804 (899)
T ss_pred HHHHHHHHHHHHhCCCCH
Confidence 555555555555555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-20 Score=202.31 Aligned_cols=243 Identities=15% Similarity=0.136 Sum_probs=163.9
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
++..+..++.......+ .....|..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|++
T Consensus 582 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 582 QLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred CHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455566666666666 56778888899999999999999999999998898888888999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
+++.+|++..++..++.++...++ +++|+..++++....|.+...+..+|.++...|++++|...+.+.+..
T Consensus 661 ~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 739 (899)
T TIGR02917 661 ALELKPDNTEAQIGLAQLLLAAKR-TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA 739 (899)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHH
Confidence 998888888777777777776654 777777777777777777777777777777777777777777655543
Q ss_pred ----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013800 331 ----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE 406 (436)
Q Consensus 331 ----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 406 (436)
.++...|++++|+..++++++.+|++..+++.+|.++...|+ +++|+..|+++++..|+++.++..++.++...|
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKD-YDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 444455555555555555555555555555555555555555 555555555555555555444444444444444
Q ss_pred ChHHHHHHHHHHHhhCCC
Q 013800 407 EDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 407 ~~~~A~~~~~~al~l~p~ 424 (436)
+ .+|+.++++++.+.|+
T Consensus 819 ~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 819 D-PRALEYAEKALKLAPN 835 (899)
T ss_pred c-HHHHHHHHHHHhhCCC
Confidence 4 3344444444444433
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-20 Score=198.71 Aligned_cols=241 Identities=10% Similarity=0.007 Sum_probs=211.6
Q ss_pred hHHHHHhhcCCCCCC--ChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 182 PPMYLAMGLGISVPG--FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 182 a~~~~~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
+...+.+++...+ . .+.+|.++|.++.. +++.+|+..|.+++...|++. ....+|.++...|++++|+..|++++
T Consensus 460 ~~~~~~~al~~~p-~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 460 NCPAIVRLLGDMS-PSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred hHHHHHHhcccCC-CCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 4455666666666 5 78899999999987 788899999999999999754 46677888889999999999999987
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---------
Q 013800 260 MADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------- 330 (436)
Q Consensus 260 ~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------- 330 (436)
...|.+ ..+..+|.++...+ ++++|+.+|+++++.+|.+...+..++..+...|++++|...++++++.
T Consensus 537 ~~~p~~-~a~~~la~all~~G-d~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~ 614 (987)
T PRK09782 537 LHDMSN-EDLLAAANTAQAAG-NGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVA 614 (987)
T ss_pred ccCCCc-HHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 775554 45778888888876 5999999999999999998888887777777889999999999988864
Q ss_pred --hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q 013800 331 --LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEED 408 (436)
Q Consensus 331 --~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 408 (436)
.++.+.|++++|+..|++++.++|+++.++.++|.++...|+ +++|+..|+++++++|+++.++.++|.++..+|++
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~-~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD-IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 788899999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChhH
Q 013800 409 EDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 409 ~~A~~~~~~al~l~p~~~~a 428 (436)
++|+..|++++++.|+....
T Consensus 694 ~eA~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 694 AATQHYARLVIDDIDNQALI 713 (987)
T ss_pred HHHHHHHHHHHhcCCCCchh
Confidence 99999999999999987543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.5e-20 Score=182.27 Aligned_cols=248 Identities=16% Similarity=0.105 Sum_probs=213.9
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH----PLLLRNYAQLLQKKGDLYRAED 253 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~~~~~g~~~~A~~ 253 (436)
+++.+..++..++..++ .+..++..+|.++...|++++|+.++++++...+.. ..++..+|.+|...|++++|+.
T Consensus 50 ~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~ 128 (389)
T PRK11788 50 QPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEE 128 (389)
T ss_pred ChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 55578888999999888 678889999999999999999999999988854322 2568899999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCchHHHHHHHHHH
Q 013800 254 YYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS-----NILAAYACFLWEMEDDGEDDKAQEEHI 328 (436)
Q Consensus 254 ~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~~ 328 (436)
+|+++++..|.+..++..++.++...++ +++|+..++++++..|.+. ..+..++.++...|++++|...+++++
T Consensus 129 ~~~~~l~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 207 (389)
T PRK11788 129 LFLQLVDEGDFAEGALQQLLEIYQQEKD-WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKAL 207 (389)
T ss_pred HHHHHHcCCcchHHHHHHHHHHHHHhch-HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999888875 9999999999999888753 245678888999999999999999877
Q ss_pred HH------------hHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 329 QV------------LPIQSKGDLEGAEEYFSRAILANPGD-GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL 395 (436)
Q Consensus 329 ~~------------~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~ 395 (436)
+. .++...|++++|+..|++++..+|.+ ..++..++.++...|+ +++|+..++++++..|+... +
T Consensus 208 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-~~~A~~~l~~~~~~~p~~~~-~ 285 (389)
T PRK11788 208 AADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD-EAEGLEFLRRALEEYPGADL-L 285 (389)
T ss_pred hHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCchH-H
Confidence 65 67888999999999999999988876 4677889999999999 99999999999999998654 4
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHH
Q 013800 396 AAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAV 429 (436)
Q Consensus 396 ~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~ 429 (436)
..++.++...|++++|+..++++++..|+.....
T Consensus 286 ~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~ 319 (389)
T PRK11788 286 LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH 319 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 8899999999999999999999999988865443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.4e-20 Score=182.75 Aligned_cols=233 Identities=14% Similarity=0.070 Sum_probs=207.2
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD----GESWMQYAKL 275 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~ 275 (436)
..+..|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+|.+
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 445567777888999999999999999999999999999999999999999999999998864333 3578899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----------------hHHHHcCC
Q 013800 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-----------------LPIQSKGD 338 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----------------~~~~~~g~ 338 (436)
+...++ +++|+..|+++++.+|.+..++..++.++...|++++|...+...++. .++...|+
T Consensus 117 ~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 117 YLKAGL-LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHCCC-HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 988875 999999999999999999999999999999999999999999876653 34567899
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCChHHHHHHHHH
Q 013800 339 LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD-SHVLAAYACFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 417 (436)
+++|+..|+++++.+|++..++..+|.++...|+ +++|+..|+++++.+|.+ ..++..++.++...|++++|+..+++
T Consensus 196 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAADPQCVRASILLGDLALAQGD-YAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999 999999999999999886 36678899999999999999999999
Q ss_pred HHhhCCCChhHHhhhhh
Q 013800 418 FQQVAPIRQGAVTTANV 434 (436)
Q Consensus 418 al~l~p~~~~a~~~an~ 434 (436)
+++..|+.......+.+
T Consensus 275 ~~~~~p~~~~~~~la~~ 291 (389)
T PRK11788 275 ALEEYPGADLLLALAQL 291 (389)
T ss_pred HHHhCCCchHHHHHHHH
Confidence 99999987554334443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=166.10 Aligned_cols=202 Identities=22% Similarity=0.279 Sum_probs=188.2
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
+..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 278 ELHRDQHRALTYFERAALAA--PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
..++ +++|+..|++++... +.....+..+| .++...|++++|+..|.+++..+|+
T Consensus 111 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~----------------------~~~~~~g~~~~A~~~~~~~~~~~~~ 167 (234)
T TIGR02521 111 QQGK-YEQAMQQFEQAIEDPLYPQPARSLENAG----------------------LCALKAGDFDKAEKYLTRALQIDPQ 167 (234)
T ss_pred Hccc-HHHHHHHHHHHHhccccccchHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 8875 999999999999864 45677888888 8888999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013800 356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 356 ~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 423 (436)
+..++..+|.++...|+ +++|+..+++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 168 ~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 168 RPESLLELAELYYLRGQ-YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred ChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99999999999999999 99999999999999998899999999999999999999999888776644
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4e-21 Score=190.28 Aligned_cols=230 Identities=15% Similarity=0.167 Sum_probs=200.6
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHh---------------------------------
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE--------------------------------- 227 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------------------------- 227 (436)
+|...|..-...-. +.+-....+|..++.+++|++|+++|+.+-+.
T Consensus 337 ~A~~~~~klp~h~~-nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~ 415 (638)
T KOG1126|consen 337 EALNLFEKLPSHHY-NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLID 415 (638)
T ss_pred HHHHHHHhhHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 45555555222222 45566678999999999999999999886544
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 228 -YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 228 -~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
+|+.++.|..+|+||--+++++.|+++|++|++++|.+..+|-.+|.=+.... +++.|..+|++|+..+|.+..+|+.
T Consensus 416 ~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~e-e~d~a~~~fr~Al~~~~rhYnAwYG 494 (638)
T KOG1126|consen 416 TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATE-EFDKAMKSFRKALGVDPRHYNAWYG 494 (638)
T ss_pred hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhH-HHHhHHHHHHhhhcCCchhhHHHHh
Confidence 45677889999999999999999999999999999999999999998777776 4999999999999999999999999
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQ 386 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~ 386 (436)
+| .+|.++++++.|+-.|++|++++|.+......+|.++.++|+ .++|+.+|++|+.
T Consensus 495 lG----------------------~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~-~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 495 LG----------------------TVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR-KDKALQLYEKAIH 551 (638)
T ss_pred hh----------------------hheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh-hhHHHHHHHHHHh
Confidence 99 899999999999999999999999999999999999999999 9999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhhc
Q 013800 387 ASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANVY 435 (436)
Q Consensus 387 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~-~an~y 435 (436)
++|.++...+..|.+++.++++++|+..+++..++.|+---... .+.+|
T Consensus 552 ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~ 601 (638)
T KOG1126|consen 552 LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIY 601 (638)
T ss_pred cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887544332 44443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-20 Score=190.99 Aligned_cols=189 Identities=13% Similarity=0.069 Sum_probs=143.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013800 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKK---------GDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d 282 (436)
+++++|+.+|+++++++|+++.++..+|.++... +++++|+..++++++++|+++.++..+|.++...++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~- 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE- 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-
Confidence 4578999999999999999999999999887643 348999999999999999999999999999888875
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ 362 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (436)
+++|+.+|+++++++|+++.+++.+| .++...|++++|+..++++++++|.++..+..
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg----------------------~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYG----------------------WNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 99999999999999999999999999 55555666666666666666666666555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 363 YAKLVWELHHDHDKALCYFERAVQAS-PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 363 la~~~~~~g~d~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
++.+++..|+ +++|+..+++++... |+++.++..+|.++..+|++++|...++++....|.
T Consensus 412 ~~~~~~~~g~-~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 412 KLWITYYHTG-IDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHHHHHhccC-HHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 5555555665 666666666666553 555555666666666666666666666665555544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-19 Score=171.97 Aligned_cols=217 Identities=11% Similarity=0.010 Sum_probs=171.7
Q ss_pred HHHHhhcC---CCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 184 MYLAMGLG---ISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 184 ~~~~~~~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
..+...+. +++...+..|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++
T Consensus 47 ~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 126 (296)
T PRK11189 47 ARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE 126 (296)
T ss_pred HHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444443 333344677999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013800 261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
++|++..+|.++|.+++..++ +++|+..|+++++++|+++.... +. .+....++++
T Consensus 127 l~P~~~~a~~~lg~~l~~~g~-~~eA~~~~~~al~~~P~~~~~~~-~~----------------------~l~~~~~~~~ 182 (296)
T PRK11189 127 LDPTYNYAYLNRGIALYYGGR-YELAQDDLLAFYQDDPNDPYRAL-WL----------------------YLAESKLDPK 182 (296)
T ss_pred hCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHH-HH----------------------HHHHccCCHH
Confidence 999999999999999998875 99999999999999999974221 11 2334567899
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HHhCCCCHHHHHHHHHHHHHCCChHHHHH
Q 013800 341 GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA-------VQASPADSHVLAAYACFLWETEEDEDDSK 413 (436)
Q Consensus 341 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~a-------l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 413 (436)
+|+..|.+++...+.+ .|. ++.+...+|+ +.++ ..++.+ +++.|...++|+.+|.++..+|++++|+.
T Consensus 183 ~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~-~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~ 257 (296)
T PRK11189 183 QAKENLKQRYEKLDKE--QWG-WNIVEFYLGK-ISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA 257 (296)
T ss_pred HHHHHHHHHHhhCCcc--ccH-HHHHHHHccC-CCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999998776554322 232 4566666666 5433 233333 35667777899999999999999999999
Q ss_pred HHHHHHhhCC-CChhHH
Q 013800 414 SSDQFQQVAP-IRQGAV 429 (436)
Q Consensus 414 ~~~~al~l~p-~~~~a~ 429 (436)
+|+++++++| +|.+..
T Consensus 258 ~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 258 LFKLALANNVYNFVEHR 274 (296)
T ss_pred HHHHHHHhCCchHHHHH
Confidence 9999999985 665533
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-19 Score=187.79 Aligned_cols=214 Identities=8% Similarity=-0.025 Sum_probs=192.4
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhh---------hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMP---------NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRA 251 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~---------~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A 251 (436)
.+..++.+++.++| +++.+|..+|.++. ..+++++|+..++++++++|+++.++..+|.++...|++++|
T Consensus 279 ~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A 357 (553)
T PRK12370 279 QALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVG 357 (553)
T ss_pred HHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Confidence 66788999999999 78888988887654 234589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 013800 252 EDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331 (436)
Q Consensus 252 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 331 (436)
+..|+++++++|+++.+++.+|.++...|+ +++|+..++++++++|.++..+..++ .
T Consensus 358 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~-~~eAi~~~~~Al~l~P~~~~~~~~~~----------------------~ 414 (553)
T PRK12370 358 SLLFKQANLLSPISADIKYYYGWNLFMAGQ-LEEALQTINECLKLDPTRAAAGITKL----------------------W 414 (553)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCChhhHHHHH----------------------H
Confidence 999999999999999999999999999875 99999999999999999988777666 5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013800 332 PIQSKGDLEGAEEYFSRAILAN-PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 410 (436)
+++..|++++|+..++++++.. |+++.++.++|.++..+|+ +++|+..+.+++...|....++..++.++...|+ +
T Consensus 415 ~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~-~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~ 491 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK-HELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--R 491 (553)
T ss_pred HHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC-HHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--H
Confidence 6667899999999999999885 7889999999999999999 9999999999999999988889999999988884 7
Q ss_pred HHHHHHHHHhh
Q 013800 411 DSKSSDQFQQV 421 (436)
Q Consensus 411 A~~~~~~al~l 421 (436)
|...++++++.
T Consensus 492 a~~~l~~ll~~ 502 (553)
T PRK12370 492 ALPTIREFLES 502 (553)
T ss_pred HHHHHHHHHHH
Confidence 77777776664
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-19 Score=192.04 Aligned_cols=222 Identities=14% Similarity=0.065 Sum_probs=199.9
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH 280 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 280 (436)
...+|.++...|++++|+..|++++...|.+ ..++.+|.++...|++++|+.+|+++++.+|.....+..++..+...+
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPG 590 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC
Confidence 4455666678999999999999987776654 557888999999999999999999999999998877777766655556
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHH
Q 013800 281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~ 348 (436)
++++|+..|+++++++|+ ..++.++|.++...|+.++|...+++++.. .++...|++++|+..|++
T Consensus 591 -r~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 591 -QPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred -CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 599999999999999996 899999999999999999999999988877 678899999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013800 349 AILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 349 al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 426 (436)
+++++|+++.+++++|.++..+|+ +++|+..|+++++++|++..+....|.++....+++.|.+.+.++..++|.-.
T Consensus 669 AL~l~P~~~~a~~nLA~al~~lGd-~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 669 AHKGLPDDPALIRQLAYVNQRLDD-MAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 999999999999999999999999 99999999999999999999999999999999999999999999999988755
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.6e-19 Score=154.88 Aligned_cols=205 Identities=22% Similarity=0.252 Sum_probs=192.4
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
.+.+.+|.-|+..|++..|..-++++++.+|++..+|..+|.+|...|+.+.|.+.|++|+.++|++.++++++|..++.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 56788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 279 LHRDQHRALTYFERAALA--APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
.++ +++|...|++|+.. .+.....+.++| .|..++|+++.|..+|+++++++|+.
T Consensus 116 qg~-~~eA~q~F~~Al~~P~Y~~~s~t~eN~G----------------------~Cal~~gq~~~A~~~l~raL~~dp~~ 172 (250)
T COG3063 116 QGR-PEEAMQQFERALADPAYGEPSDTLENLG----------------------LCALKAGQFDQAEEYLKRALELDPQF 172 (250)
T ss_pred CCC-hHHHHHHHHHHHhCCCCCCcchhhhhhH----------------------HHHhhcCCchhHHHHHHHHHHhCcCC
Confidence 985 99999999999985 467889999999 88999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
+.....++..++..|+ |..|..++++.....+-....+.....+-...|+.+.+-++-.+.....|...+
T Consensus 173 ~~~~l~~a~~~~~~~~-y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 173 PPALLELARLHYKAGD-YAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred ChHHHHHHHHHHhccc-chHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 9999999999999999 999999999999888888888888889999999999998888888888887655
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-19 Score=170.63 Aligned_cols=208 Identities=19% Similarity=0.206 Sum_probs=193.5
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
.+...+|+.+...++.++|+.+|+++++++|....+|..+|.=|..+++...|++.|++|++++|.|-.+|+.+|..|..
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI 410 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence 34556788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
++. +.=|+-+|++|+++.|+|...|..|| .+|.+.++.++|+.+|++++.....+..
T Consensus 411 m~M-h~YaLyYfqkA~~~kPnDsRlw~aLG----------------------~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 411 MKM-HFYALYYFQKALELKPNDSRLWVALG----------------------ECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred hcc-hHHHHHHHHHHHhcCCCchHHHHHHH----------------------HHHHHhccHHHHHHHHHHHHhccccchH
Confidence 987 89999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 359 IMSQYAKLVWELHHDHDKALCYFERAVQ-------ASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
++..||.++.++++ ..+|..+|++.++ ..|.-..+...|+..+.+.+++++|..+..+++.-.+.-.++..
T Consensus 468 ~l~~LakLye~l~d-~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~ 545 (559)
T KOG1155|consen 468 ALVRLAKLYEELKD-LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKA 545 (559)
T ss_pred HHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHH
Confidence 99999999999999 9999999999998 44555678888999999999999999999999888777666654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=177.27 Aligned_cols=221 Identities=14% Similarity=0.105 Sum_probs=184.1
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH 280 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 280 (436)
-+..|..+++.|+..+|.-+|+.+++.+|+++++|..||.+....++-..|+..++++++++|++..++..||..|...+
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH--------------------HHHHHHHHHHHccCchHH--HHHHHHHHHHhHHHHcCC
Q 013800 281 RDQHRALTYFERAALAAPQDSN--------------------ILAAYACFLWEMEDDGED--DKAQEEHIQVLPIQSKGD 338 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~~--------------------~~~~la~~~~~~g~~~~A--~~~~~~~~~~~~~~~~g~ 338 (436)
- -.+|+.++.+-|...|.... .+..+...+......... .--++..+- .+|.-.|+
T Consensus 368 ~-q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG-VLy~ls~e 445 (579)
T KOG1125|consen 368 L-QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG-VLYNLSGE 445 (579)
T ss_pred h-HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH-HHHhcchH
Confidence 5 68899999998877653211 111111111111100000 000000000 88888999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013800 339 LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 418 (436)
|++|+.+|+.||...|+|...|+.||..+..-.+ ..+|+..|++|+++.|....++++||..+..+|.|++|+++|-.+
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~-s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGNR-SEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcc-cHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999998888 999999999999999999999999999999999999999999999
Q ss_pred HhhCCC
Q 013800 419 QQVAPI 424 (436)
Q Consensus 419 l~l~p~ 424 (436)
+.+.++
T Consensus 525 L~mq~k 530 (579)
T KOG1125|consen 525 LSMQRK 530 (579)
T ss_pred HHhhhc
Confidence 999766
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-17 Score=177.80 Aligned_cols=246 Identities=13% Similarity=0.063 Sum_probs=151.0
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+...+..++..++.+.+ .++.++..++.++...|++++|+..++++++.+|+++. +..+|.++...|++++|+..+++
T Consensus 64 ~~~~A~~~~~~al~~~P-~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~ 141 (765)
T PRK10049 64 QWQNSLTLWQKALSLEP-QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQ 141 (765)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 44455666666666666 56666667777777777777777777777777777766 66777777777777777777777
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------------------------------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAAL------------------------------------------ 295 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~------------------------------------------ 295 (436)
+++..|+++.++..++.++...+ ..++|+..++++..
T Consensus 142 al~~~P~~~~~~~~la~~l~~~~-~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 142 ALPRAPQTQQYPTEYVQALRNNR-LSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCC-ChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 77777777777666666655443 36666655542110
Q ss_pred ----h---CCCCHH----H-----------------------------------HHHHHHHHHHccCchHHHHHHHHHHH
Q 013800 296 ----A---APQDSN----I-----------------------------------LAAYACFLWEMEDDGEDDKAQEEHIQ 329 (436)
Q Consensus 296 ----~---~p~~~~----~-----------------------------------~~~la~~~~~~g~~~~A~~~~~~~~~ 329 (436)
. +|.... + ...++.++...|++++|+..+++.++
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 1 111100 0 00122333333333333333332221
Q ss_pred H----------------hHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHhcCCHHHHH
Q 013800 330 V----------------LPIQSKGDLEGAEEYFSRAILANPG---------------DGEIMSQYAKLVWELHHDHDKAL 378 (436)
Q Consensus 330 ~----------------~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~d~~~A~ 378 (436)
. .++.+.|++++|+..+++++...|. ...++..++.++...|+ +++|+
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~-~~eA~ 379 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND-LPQAE 379 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC-HHHHH
Confidence 1 1334556666666666666655542 12355667777777777 78888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 379 CYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 379 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
..+++++...|++..++..+|.++...|++++|++.+++++++.|+...
T Consensus 380 ~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~ 428 (765)
T PRK10049 380 MRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN 428 (765)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Confidence 8888888888888888888888888888888888888888888877654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.8e-18 Score=171.33 Aligned_cols=219 Identities=17% Similarity=0.210 Sum_probs=189.5
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
...++.++.++..|++++|+.++.++|+++|.++.+|+.||.+|..+|+.+++...+-.|-.++|.+.+.|..++.....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 45677788888889999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------------------------
Q 013800 279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV---------------------------- 330 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------------------------- 330 (436)
++. +.+|.-||.+||+.+|.+....+..+.++.++|+...|+..+.+.+..
T Consensus 220 ~~~-i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 220 LGN-INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred ccc-HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 875 999999999999999999999999999999999988888877632221
Q ss_pred --------------------------------------------------------------------------------
Q 013800 331 -------------------------------------------------------------------------------- 330 (436)
Q Consensus 331 -------------------------------------------------------------------------------- 330 (436)
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence
Q ss_pred -------------------------------------------hHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Q 013800 331 -------------------------------------------LPIQSKGDLEGAEEYFSRAILANPG-DGEIMSQYAKL 366 (436)
Q Consensus 331 -------------------------------------------~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 366 (436)
.++...|++.+|+.+|..++...+. +..+|+.+|.|
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 6777888888999888888776553 46789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013800 367 VWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 367 ~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 419 (436)
|..+|. +++|++.|++++...|++.++...|+.++.++|+.++|++.+.+..
T Consensus 459 ~~~l~e-~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 459 YMELGE-YEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHhh-HHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999 9999999999999999999999999999999999999888887755
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-18 Score=164.12 Aligned_cols=219 Identities=17% Similarity=0.224 Sum_probs=200.2
Q ss_pred cCCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
.++..+-.-+..++.+++ .+...|+.++.+|+...+.++....|.++..++|+++++|+.+|++++-++++++|+..|+
T Consensus 340 g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 455566677788888888 5666799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------
Q 013800 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------ 330 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------ 330 (436)
+++.++|++...+..++.+++++++ ++++...|+.+++.-|..++++...|.++.+++++++|.+.|..++..
T Consensus 419 Kai~L~pe~~~~~iQl~~a~Yr~~k-~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 419 KAISLDPENAYAYIQLCCALYRQHK-IAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred HHhhcChhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 9999999999999999999999986 999999999999999999999999999999999999999999988776
Q ss_pred -------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 331 -------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAA 397 (436)
Q Consensus 331 -------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~ 397 (436)
.++...+++.+|+.++++|++++|....++..||.+..++|+ .++|+++|+++..+.....+....
T Consensus 498 ~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~-i~eAielFEksa~lArt~~E~~~a 576 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK-IDEAIELFEKSAQLARTESEMVHA 576 (606)
T ss_pred ccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 445556999999999999999999999999999999999999 999999999999988765554443
Q ss_pred H
Q 013800 398 Y 398 (436)
Q Consensus 398 l 398 (436)
+
T Consensus 577 ~ 577 (606)
T KOG0547|consen 577 Y 577 (606)
T ss_pred H
Confidence 3
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=160.35 Aligned_cols=215 Identities=13% Similarity=0.116 Sum_probs=180.4
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG-DLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
.++..+-.++...+.+++|+..+.++|+++|++..+|..++.++..+| ++++++..+.++++.+|++..+|..++.++.
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 344444446667788999999999999999999999999999999998 6799999999999999999999999998887
Q ss_pred HHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 278 ELHRD-QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 278 ~~~~d-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
..+.. +++++.+++++++.+|++..+|...+ .++...|++++|++++.++|+.+|.+
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~----------------------w~l~~l~~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQ----------------------WVLRTLGGWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcccHHHHHHHH----------------------HHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence 77642 37889999999999999999999999 78888889999999999999999999
Q ss_pred HHHHHHHHHHHHHh---cC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCCh
Q 013800 357 GEIMSQYAKLVWEL---HH---DHDKALCYFERAVQASPADSHVLAAYACFLWE----TEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 357 ~~~~~~la~~~~~~---g~---d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~p~~~ 426 (436)
..+|+.++.++... |+ ..++++.+..+++.++|++..+|..++.++.. +++..+|+..+.+++...|...
T Consensus 176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~ 255 (320)
T PLN02789 176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHV 255 (320)
T ss_pred hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcH
Confidence 99999999888765 33 02478888889999999999999999999887 4556778888888888877766
Q ss_pred hHHh-hhhhc
Q 013800 427 GAVT-TANVY 435 (436)
Q Consensus 427 ~a~~-~an~y 435 (436)
.+.. ++.+|
T Consensus 256 ~al~~l~d~~ 265 (320)
T PLN02789 256 FALSDLLDLL 265 (320)
T ss_pred HHHHHHHHHH
Confidence 6554 65555
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.3e-18 Score=165.20 Aligned_cols=211 Identities=15% Similarity=0.119 Sum_probs=190.7
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
..+..|+.+|..|+..|++.+|.++|.++..++|....+|..+|..+...|..++|+..|.+|-++-|+...-..-+|.-
T Consensus 310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgme 389 (611)
T KOG1173|consen 310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGME 389 (611)
T ss_pred CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHH
Confidence 55688999999999999999999999999999999999999999999999999999999999999999987777778877
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC-
Q 013800 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP- 354 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p- 354 (436)
|...+. +..|..+|.+|+.+.|.++-++..+| .+.+..+.|.+|+.+|+.++..-+
T Consensus 390 y~~t~n-~kLAe~Ff~~A~ai~P~Dplv~~Elg----------------------vvay~~~~y~~A~~~f~~~l~~ik~ 446 (611)
T KOG1173|consen 390 YMRTNN-LKLAEKFFKQALAIAPSDPLVLHELG----------------------VVAYTYEEYPEALKYFQKALEVIKS 446 (611)
T ss_pred HHHhcc-HHHHHHHHHHHHhcCCCcchhhhhhh----------------------heeehHhhhHHHHHHHHHHHHHhhh
Confidence 777765 99999999999999999999999999 888888999999999999984422
Q ss_pred ------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhH
Q 013800 355 ------GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 355 ------~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a 428 (436)
.-...+.+||.++.+++. +++|+..|+++|.+.|.+..++..+|.++..+|+.+.|++.|.++|.+.|+....
T Consensus 447 ~~~e~~~w~p~~~NLGH~~Rkl~~-~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~ 525 (611)
T KOG1173|consen 447 VLNEKIFWEPTLNNLGHAYRKLNK-YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFI 525 (611)
T ss_pred ccccccchhHHHHhHHHHHHHHhh-HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHH
Confidence 234568999999999999 9999999999999999999999999999999999999999999999999998665
Q ss_pred Hh
Q 013800 429 VT 430 (436)
Q Consensus 429 ~~ 430 (436)
.+
T Consensus 526 ~~ 527 (611)
T KOG1173|consen 526 SE 527 (611)
T ss_pred HH
Confidence 54
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-17 Score=158.89 Aligned_cols=195 Identities=17% Similarity=0.208 Sum_probs=172.5
Q ss_pred hHhhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHH-------------------------------HHHHHHHHHcCCH
Q 013800 203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLL-------------------------------RNYAQLLQKKGDL 248 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~-------------------------------~~la~~~~~~g~~ 248 (436)
..|.+.....++++|+..|+..++.+|-.. +.+ .-+|+.|...++.
T Consensus 267 ~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eH 346 (559)
T KOG1155|consen 267 QIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEH 346 (559)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhH
Confidence 456678888999999999999999888432 111 0134555566778
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHH
Q 013800 249 YRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI 328 (436)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 328 (436)
++|+.+|++|++++|....+|..+|.-|.++.+ ...|+..|++|++++|.|-.+|+.+|
T Consensus 347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN-t~AAi~sYRrAvdi~p~DyRAWYGLG-------------------- 405 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN-THAAIESYRRAVDINPRDYRAWYGLG-------------------- 405 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc-cHHHHHHHHHHHhcCchhHHHHhhhh--------------------
Confidence 999999999999999999999999999999986 89999999999999999999999999
Q ss_pred HHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q 013800 329 QVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEED 408 (436)
Q Consensus 329 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 408 (436)
..|.-++...-|+-+|++|+++.|+|...|..||.||.++++ .++|+++|.+++.....+..++..+|++|.++++.
T Consensus 406 --QaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~-~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 406 --QAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR-LEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred --HHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc-HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 888888999999999999999999999999999999999999 99999999999999988899999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 013800 409 EDDSKSSDQFQQV 421 (436)
Q Consensus 409 ~~A~~~~~~al~l 421 (436)
.+|..+|++.++.
T Consensus 483 ~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 483 NEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999883
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.1e-17 Score=174.33 Aligned_cols=249 Identities=12% Similarity=0.026 Sum_probs=192.2
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------------
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK------------- 244 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~------------- 244 (436)
++.++..++...+...+ .++. +..+|.++...|++++|+..|+++++.+|++..++..++.++..
T Consensus 98 ~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 98 QYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred CHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 44455566666666666 4555 66677777777777777777777777777666655555544433
Q ss_pred --------------------------------------------------------------------------cCCHHH
Q 013800 245 --------------------------------------------------------------------------KGDLYR 250 (436)
Q Consensus 245 --------------------------------------------------------------------------~g~~~~ 250 (436)
.|++++
T Consensus 176 ~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e 255 (765)
T PRK10049 176 ANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD 255 (765)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 344455
Q ss_pred HHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCchHHHHHHH
Q 013800 251 AEDYYNHATMADPGDG-ESWMQYAKLVWELHRDQHRALTYFERAALAAPQD----SNILAAYACFLWEMEDDGEDDKAQE 325 (436)
Q Consensus 251 A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~ 325 (436)
|+..|+++++..|..+ .+...+|.++...++ +++|+.+|+++++.+|.+ ......++.++...|++++|...++
T Consensus 256 A~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~-~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~ 334 (765)
T PRK10049 256 VISEYQRLKAEGQIIPPWAQRWVASAYLKLHQ-PEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTA 334 (765)
T ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHhcCC-cHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 5555555555432211 122335667777764 899999999988888765 4567778888899999999999977
Q ss_pred HHHHH---------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 013800 326 EHIQV---------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKAL 378 (436)
Q Consensus 326 ~~~~~---------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~ 378 (436)
+.... .++...|++++|++.+++++...|+++.++..+|.++...|+ +++|+
T Consensus 335 ~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~-~~~A~ 413 (765)
T PRK10049 335 HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW-PRAAE 413 (765)
T ss_pred HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-HHHHH
Confidence 54431 577889999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 379 CYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 379 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
+.+++++.++|++..++..+|.++..+|++++|...++++++..|+......
T Consensus 414 ~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 414 NELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999887655
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-17 Score=160.29 Aligned_cols=249 Identities=16% Similarity=0.094 Sum_probs=212.6
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+.+++..+|..++.+++ .+..-|.+....+..+|+|++|+..-.+.++++|+-+..|..+|..+.-+|+|++|+..|.+
T Consensus 17 d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~ 95 (539)
T KOG0548|consen 17 DFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSE 95 (539)
T ss_pred cHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHH
Confidence 66688999999999999 58888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHH------------------------------------------------------------------
Q 013800 258 ATMADPGDGESWMQ------------------------------------------------------------------ 271 (436)
Q Consensus 258 al~~~p~~~~~~~~------------------------------------------------------------------ 271 (436)
.++.+|.+...+..
T Consensus 96 GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~ 175 (539)
T KOG0548|consen 96 GLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKAD 175 (539)
T ss_pred HhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHH
Confidence 99998887433333
Q ss_pred ------------------------------------------------------HHHHHHHHcCCHHHHHHHHHHHHHhC
Q 013800 272 ------------------------------------------------------YAKLVWELHRDQHRALTYFERAALAA 297 (436)
Q Consensus 272 ------------------------------------------------------la~~~~~~~~d~~~A~~~~~~al~~~ 297 (436)
+|...+... ++..|+++|.+++.++
T Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk-~f~~a~q~y~~a~el~ 254 (539)
T KOG0548|consen 176 GQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKK-DFETAIQHYAKALELA 254 (539)
T ss_pred HHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhh-hHHHHHHHHHHHHhHh
Confidence 343333333 3578899999999998
Q ss_pred CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----------------------------------------------
Q 013800 298 PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----------------------------------------------- 330 (436)
Q Consensus 298 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------------------------------------------- 330 (436)
.+...+.+.+-++...|.+...+.....+++.
T Consensus 255 -~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ 333 (539)
T KOG0548|consen 255 -TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL 333 (539)
T ss_pred -hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH
Confidence 77777777777777776665554444322111
Q ss_pred --------------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 013800 331 --------------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKAL 378 (436)
Q Consensus 331 --------------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~ 378 (436)
..++..|+|..|+..|.++|..+|+++.+|.|+|.||..+|. +..|+
T Consensus 334 ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~-~~~aL 412 (539)
T KOG0548|consen 334 LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGE-YPEAL 412 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhh-HHHHH
Confidence 778889999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 379 CYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 379 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
..++++++++|+...+|...|.++..+.+|++|++.|.++++.+|...+...
T Consensus 413 ~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~ 464 (539)
T KOG0548|consen 413 KDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAID 464 (539)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 9999999999999999999999999999999999999999999998766544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.3e-18 Score=155.12 Aligned_cols=225 Identities=13% Similarity=0.093 Sum_probs=207.9
Q ss_pred hhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013800 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 281 (436)
..+|.+|+++|-+.+|.+.++.+++..| .++.+..++.+|.+..+...|+..|...+...|.+...+..+|.++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 4689999999999999999999999988 788999999999999999999999999999999999999999999999986
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHH
Q 013800 282 DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRA 349 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~a 349 (436)
+++|+++|+.+++.+|.+.++...++..++..++.+-|+..|++.++. .+.+..++++-++..|++|
T Consensus 306 -~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 306 -QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred -HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999988877 6777789999999999999
Q ss_pred HHhCC---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013800 350 ILANP---GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 350 l~~~p---~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 426 (436)
+.... .-.++|+++|.+....|+ +.-|..+|+-++..++++.+++.+||.+-.+.|+.++|..++..+-.+.|+..
T Consensus 385 lstat~~~~aaDvWYNlg~vaV~iGD-~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 385 LSTATQPGQAADVWYNLGFVAVTIGD-FNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred HhhccCcchhhhhhhccceeEEeccc-hHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 98743 236899999999999999 99999999999999999999999999999999999999999999999999876
Q ss_pred hHH
Q 013800 427 GAV 429 (436)
Q Consensus 427 ~a~ 429 (436)
+..
T Consensus 464 E~~ 466 (478)
T KOG1129|consen 464 EVT 466 (478)
T ss_pred ccc
Confidence 643
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=164.97 Aligned_cols=217 Identities=22% Similarity=0.240 Sum_probs=121.6
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+.+.+...+.+.+..++ .....+..++.+ ...+++++|+.+++++.+..+ ++..+..+..++...++++++...+++
T Consensus 59 ~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~ 135 (280)
T PF13429_consen 59 DYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEK 135 (280)
T ss_dssp --------------------------------------------------------------H-HHHTT-HHHHHHHHHH
T ss_pred ccccccccccccccccc-cccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHH
Confidence 45566666777777666 456666666666 688999999999999888764 567778888889999999999999999
Q ss_pred HHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH
Q 013800 258 ATMAD--PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335 (436)
Q Consensus 258 al~~~--p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 335 (436)
+.... +.++.+|..+|.++...|+ +++|+.+|+++++++|++..++..++ .++..
T Consensus 136 ~~~~~~~~~~~~~~~~~a~~~~~~G~-~~~A~~~~~~al~~~P~~~~~~~~l~----------------------~~li~ 192 (280)
T PF13429_consen 136 LEELPAAPDSARFWLALAEIYEQLGD-PDKALRDYRKALELDPDDPDARNALA----------------------WLLID 192 (280)
T ss_dssp HHH-T---T-HHHHHHHHHHHHHCCH-HHHHHHHHHHHHHH-TT-HHHHHHHH----------------------HHHCT
T ss_pred HHhccCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHH----------------------HHHHH
Confidence 87765 6788999999999888875 99999999999999999999999999 88888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013800 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 336 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 415 (436)
.|+++++.+.+....+..|.++..|..+|.++..+|+ +++|+.+|++++..+|+++.++..+|.++...|+.++|..++
T Consensus 193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~-~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR-YEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT--HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------
T ss_pred CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999988889999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 013800 416 DQFQQV 421 (436)
Q Consensus 416 ~~al~l 421 (436)
++++..
T Consensus 272 ~~~~~~ 277 (280)
T PF13429_consen 272 RQALRL 277 (280)
T ss_dssp ------
T ss_pred cccccc
Confidence 998753
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.9e-19 Score=167.97 Aligned_cols=222 Identities=19% Similarity=0.206 Sum_probs=96.9
Q ss_pred hhhhhhCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013800 205 DLIMPNFDDSAEAEEYYKRMIDE--YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d 282 (436)
+.++...|++++|++.+++.+.. .|++...|..+|.+....+++++|+..|++++..++.++..+..++.+ ...+ +
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~-~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG-D 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc-c
Confidence 33444445555555555433322 244445555555555555555555555555555555544444444444 2222 2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--------------hHHHHcCCHHHHHHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------------LPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------~~~~~~g~~~~A~~~~~~ 348 (436)
+++|+.+++++.+..+ ++..+..+..++...++++++...+...... .++.+.|++++|+.+|++
T Consensus 93 ~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 93 PEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555555444332 2333444444444555555555444432221 888899999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhH
Q 013800 349 AILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 349 al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a 428 (436)
+++.+|++..++..++.++...|+ ++++...+.......|.++..+..+|.++..+|++++|+.+|++++..+|+....
T Consensus 172 al~~~P~~~~~~~~l~~~li~~~~-~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 172 ALELDPDDPDARNALAWLLIDMGD-YDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HHHH-TT-HHHHHHHHHHHCTTCH-HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 999999999999999999999999 9999999999998888889999999999999999999999999999999976665
Q ss_pred Hh
Q 013800 429 VT 430 (436)
Q Consensus 429 ~~ 430 (436)
..
T Consensus 251 ~~ 252 (280)
T PF13429_consen 251 LL 252 (280)
T ss_dssp HH
T ss_pred cc
Confidence 44
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-17 Score=144.75 Aligned_cols=167 Identities=19% Similarity=0.199 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW 312 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 312 (436)
.+...||.-|+..|++..|..-+++|++.+|.+..+|..+|.+|...|. .+.|.+.|++|+.++|++.++++++|
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge-~~~A~e~YrkAlsl~p~~GdVLNNYG---- 110 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE-NDLADESYRKALSLAPNNGDVLNNYG---- 110 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-hhhHHHHHHHHHhcCCCccchhhhhh----
Confidence 6788999999999999999999999999999999999999999888875 99999999999999999999999999
Q ss_pred HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA--NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
..++.+|++++|...|++|+.. .+..+.+|.|+|.|..+.|+ ++.|..+|+++++++|+
T Consensus 111 ------------------~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq-~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 111 ------------------AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ-FDQAEEYLKRALELDPQ 171 (250)
T ss_pred ------------------HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC-chhHHHHHHHHHHhCcC
Confidence 7788899999999999999975 45668899999999999999 99999999999999999
Q ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013800 391 DSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 391 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 423 (436)
.+.....++..++..|++..|..++++....-+
T Consensus 172 ~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 172 FPPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred CChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 999999999999999999999999999887655
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=146.05 Aligned_cols=173 Identities=22% Similarity=0.258 Sum_probs=161.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACF 310 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 310 (436)
.+..+..+|.++...|++++|+..++++++.+|.+..++..+|.++...++ +++|+..|+++++..|.+..++..++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~-- 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE-LEKAEDSFRRALTLNPNNGDVLNNYG-- 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHH--
Confidence 367899999999999999999999999999999999999999999999875 99999999999999999999999999
Q ss_pred HHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013800 311 LWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN--PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~ 388 (436)
.++...|++++|+..|++++... +.....+..+|.++...|+ +++|+..|.+++..+
T Consensus 107 --------------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 107 --------------------TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD-FDKAEKYLTRALQID 165 (234)
T ss_pred --------------------HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC
Confidence 88889999999999999999854 5567889999999999999 999999999999999
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 389 PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 389 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
|++..++..++.++...|++++|+..+++++.+.|....
T Consensus 166 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 204 (234)
T TIGR02521 166 PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAE 204 (234)
T ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999999999999998766444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.1e-16 Score=154.39 Aligned_cols=215 Identities=13% Similarity=0.064 Sum_probs=170.7
Q ss_pred hhhhhhCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 013800 205 DLIMPNFDDSAEAEEYYKRMIDEYPCHPL-LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQ 283 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~P~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~ 283 (436)
+......|+++.|..+|.++.+.+|++.. .....+.++...|++++|+..++++.+.+|+++.++..++.+|...+ ++
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~g-dw 203 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTG-AW 203 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-hH
Confidence 44446667777777777777777776542 23344677777777777777777777777777777777777776665 37
Q ss_pred HHHHHHHHHHH------------------------------------------HhCCCCHHHHHHHHHHHHHccCchHHH
Q 013800 284 HRALTYFERAA------------------------------------------LAAPQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 284 ~~A~~~~~~al------------------------------------------~~~p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
++|++.+.+.. +..|+++.++..++..+...|+.++|.
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 77664444433 233557788889999999999999999
Q ss_pred HHHHHHHHH---------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 322 KAQEEHIQV---------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 322 ~~~~~~~~~---------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
..+++.++. ......++.+++++.+++.++.+|+++..+..+|.++...++ +++|.+.|+++++..|++
T Consensus 284 ~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~-~~~A~~~le~al~~~P~~- 361 (398)
T PRK10747 284 QIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE-WQEASLAFRAALKQRPDA- 361 (398)
T ss_pred HHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCH-
Confidence 999988877 223345999999999999999999999999999999999999 999999999999999995
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 393 HVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 393 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
..+..++.++.++|+.++|.++|++++.+.
T Consensus 362 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 362 YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 456789999999999999999999998764
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.1e-17 Score=149.56 Aligned_cols=230 Identities=14% Similarity=0.113 Sum_probs=163.3
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH---HH------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LL------------LRNYAQLLQKKGDLYRAEDYYNHATMADP 263 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~------------~~~la~~~~~~g~~~~A~~~~~~al~~~p 263 (436)
.+.+..|.+++++|++++|+..|++.+..+|.+. ++ +......+...|++..|+++..+.+++.|
T Consensus 107 ~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~ 186 (504)
T KOG0624|consen 107 AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP 186 (504)
T ss_pred HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc
Confidence 4455555556666666666666666665555321 11 11222233344555666666666666666
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------
Q 013800 264 GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------- 330 (436)
Q Consensus 264 ~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------- 330 (436)
-++..+...+.||...+. ...|+..++.+-++..++.+.++.++.+++..|+.+.++..++++++.
T Consensus 187 Wda~l~~~Rakc~i~~~e-~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGE-PKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKK 265 (504)
T ss_pred chhHHHHHHHHHHHhcCc-HHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHH
Confidence 666666667777666653 777777777777777777777777777777777777777777766554
Q ss_pred -----------hHHHHcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 331 -----------LPIQSKGDLEGAEEYFSRAILANPGDGEI----MSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL 395 (436)
Q Consensus 331 -----------~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~ 395 (436)
......++|.++++..++.++.+|..+.+ ...+..|+..-++ +.+|+..+.++|+.+|++..++
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~-~~eAiqqC~evL~~d~~dv~~l 344 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQ-FGEAIQQCKEVLDIDPDDVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCC-HHHHHHHHHHHHhcCchHHHHH
Confidence 44455678888888888888888875443 3445666777788 9999999999999999999999
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 396 AAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 396 ~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
...|.+|.-...|++|+..|+++++.++....+..
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 99999999999999999999999999998877654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-16 Score=163.16 Aligned_cols=248 Identities=15% Similarity=0.138 Sum_probs=210.0
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-LLLRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-~~~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
++...+...+.-.+ ++.-++.+.+.+.+..++|-.|+.+|++++.++|... +....+|.|+.++|+.+.|+..|.+++
T Consensus 148 ~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ral 226 (1018)
T KOG2002|consen 148 DADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERAL 226 (1018)
T ss_pred HHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHH
Confidence 55566666666666 5666777788888888999999999999999998654 777888999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013800 260 MADPGDGESWMQYAKLVWELH--RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 260 ~~~p~~~~~~~~la~~~~~~~--~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
+++|.+..++..||.+-.... ..+..++..+.++...++.+|.++..|+.-++..|++..+..+...+++.
T Consensus 227 qLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~ 306 (1018)
T KOG2002|consen 227 QLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIK 306 (1018)
T ss_pred hcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHH
Confidence 999999999998887655432 13778999999999999999999999999999999999999888866554
Q ss_pred --------hHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 331 --------LPIQSKGDLEGAEEYFSRAILANPGD-GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 331 --------~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
+.|..+|+|++|..+|.++++.++++ .-.++.+|+++...|+ ++.|+.+|+++++..|++.+....+|.+
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~d-le~s~~~fEkv~k~~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGD-LEESKFCFEKVLKQLPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhch-HHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence 78888999999999999999999988 7788899999999999 9999999999999999999999999999
Q ss_pred HHHCC----ChHHHHHHHHHHHhhCCCChhHHh
Q 013800 402 LWETE----EDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 402 ~~~~g----~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
|...+ ..+.|..+..+++...|.-..+..
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l 418 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWL 418 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHH
Confidence 88875 567888888998888766555433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.2e-16 Score=153.77 Aligned_cols=240 Identities=12% Similarity=0.018 Sum_probs=168.0
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-LLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
++..+...+.++....+ .....+...+.+....|+++.|..+|+++.+..|+.. .+...++.++...|++++|++.++
T Consensus 99 ~~~~A~~~l~~~~~~~~-~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~ 177 (409)
T TIGR00540 99 DYAKAEKLIAKNADHAA-EPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVD 177 (409)
T ss_pred CHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44455555555555555 3444555556666666666666666666666666553 344455666666666666666666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------------------------HhCC
Q 013800 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAA--------------------------------------LAAP 298 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al--------------------------------------~~~p 298 (436)
+.++..|+++.++..++.++...++ +++|++.+.+.. ...|
T Consensus 178 ~l~~~~P~~~~~l~ll~~~~~~~~d-~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p 256 (409)
T TIGR00540 178 KLLEMAPRHKEVLKLAEEAYIRSGA-WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP 256 (409)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC
Confidence 6666666666666666666666553 655555444433 3344
Q ss_pred ----CCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--------------hHHHHcCCHHHHHHHHHHHHHhCCCCH--H
Q 013800 299 ----QDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------------LPIQSKGDLEGAEEYFSRAILANPGDG--E 358 (436)
Q Consensus 299 ----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------~~~~~~g~~~~A~~~~~~al~~~p~~~--~ 358 (436)
+++.++..++..+...|+.++|...+++.++. ......++.+.+++.++++++.+|+++ .
T Consensus 257 ~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ 336 (409)
T TIGR00540 257 RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCC 336 (409)
T ss_pred HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHH
Confidence 46777788888888888888888888877776 112334677888888888888889888 8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 359 IMSQYAKLVWELHHDHDKALCYFE--RAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
.+..+|+++++.|+ +++|.++|+ ++++..|+... +..+|.++.++|+.++|.++|++++..
T Consensus 337 ll~sLg~l~~~~~~-~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 337 INRALGQLLMKHGE-FIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHHHccc-HHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888999988888 999999988 57778887544 558889999999999999998887654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.4e-17 Score=159.51 Aligned_cols=209 Identities=13% Similarity=0.091 Sum_probs=184.5
Q ss_pred CChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 180 VSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
.++.+.|..++.-+| ....+|..||.+....++-..|+..++++++++|++..++..||..|...|.-.+|..++.+.|
T Consensus 302 ~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi 380 (579)
T KOG1125|consen 302 SEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWI 380 (579)
T ss_pred hHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 356677888888888 7899999999999999999999999999999999999999999999999999999999988887
Q ss_pred HhCC-------------------------------------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 260 MADP-------------------------------------------GDGESWMQYAKLVWELHRDQHRALTYFERAALA 296 (436)
Q Consensus 260 ~~~p-------------------------------------------~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~ 296 (436)
...| .++++...||.+|+-. ++|++|+.||+.||..
T Consensus 381 ~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls-~efdraiDcf~~AL~v 459 (579)
T KOG1125|consen 381 RNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS-GEFDRAVDCFEAALQV 459 (579)
T ss_pred HhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc-hHHHHHHHHHHHHHhc
Confidence 6543 2377888899665555 4699999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH
Q 013800 297 APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDK 376 (436)
Q Consensus 297 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~ 376 (436)
.|++...|..|| ..+....+.++|+..|.+|+++.|....++++||..++.+|. |.+
T Consensus 460 ~Pnd~~lWNRLG----------------------AtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~-ykE 516 (579)
T KOG1125|consen 460 KPNDYLLWNRLG----------------------ATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA-YKE 516 (579)
T ss_pred CCchHHHHHHhh----------------------HHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh-HHH
Confidence 999999999999 888888999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhCCC----------CHHHHHHHHHHHHHCCChHHHHH
Q 013800 377 ALCYFERAVQASPA----------DSHVLAAYACFLWETEEDEDDSK 413 (436)
Q Consensus 377 A~~~~~~al~~~p~----------~~~~~~~la~~~~~~g~~~~A~~ 413 (436)
|.++|-.||.+.+. +..+|..|-.++..+++.+-+..
T Consensus 517 A~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 517 AVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 99999999987654 12578888888888888875543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-16 Score=150.41 Aligned_cols=228 Identities=13% Similarity=0.107 Sum_probs=194.2
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--HHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFD-DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDL--YRAEDY 254 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~--~~A~~~ 254 (436)
....+...+..++.+.+ .+..+|...|.++..+| ++++++..+.++++.+|++..+|..++.++...|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 45577888899999999 89999999999999998 689999999999999999999999999999998874 788999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHH
Q 013800 255 YNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ 334 (436)
Q Consensus 255 ~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 334 (436)
++++++.+|++..+|..++.++...+. +++|++++.++|+.+|.+..+|+..+.++...+... .
T Consensus 131 ~~kal~~dpkNy~AW~~R~w~l~~l~~-~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~---------------~ 194 (320)
T PLN02789 131 TRKILSLDAKNYHAWSHRQWVLRTLGG-WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLG---------------G 194 (320)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccc---------------c
Confidence 999999999999999999999999975 999999999999999999999999995554332100 0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC----
Q 013800 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE----LHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE---- 406 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---- 406 (436)
.....++++.+..++|..+|++..+|++++.++.. +++ ..+|+..+.+++...|.+..++..|+.++....
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~-~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~ 273 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS-DPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTA 273 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc-chhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccch
Confidence 01123578899999999999999999999999988 455 577999999999999999999999999998642
Q ss_pred --------------ChHHHHHHHHHHHhhCC
Q 013800 407 --------------EDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 407 --------------~~~~A~~~~~~al~l~p 423 (436)
..++|.+++...-..+|
T Consensus 274 ~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 274 EFRDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred hhhhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 23567777777654444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-15 Score=152.74 Aligned_cols=232 Identities=14% Similarity=0.048 Sum_probs=198.4
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHH
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG-ESWMQYAKLVWEL 279 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~ 279 (436)
....|.+....|+++.|.+.+.++.+..|+....+...|.++...|++++|..++.++.+..|++. .+...++.++...
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 345677888899999999999999999998888889999999999999999999999999999985 5666779888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----------------------------
Q 013800 280 HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----------------------------- 330 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------------------------- 330 (436)
++ +++|...++++++..|+++.++..++.++...|+++++...+.+..+.
T Consensus 167 ~~-~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~ 245 (409)
T TIGR00540 167 NE-LHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGI 245 (409)
T ss_pred CC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 75 999999999999999999999999999999999999888877633321
Q ss_pred -------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHhcCCHHHHHHHHHH
Q 013800 331 -------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEIM--SQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 331 -------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~d~~~A~~~~~~ 383 (436)
..+...|++++|++.++++++..|++.... ..........++ .+++++.+++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~-~~~~~~~~e~ 324 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED-NEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC-hHHHHHHHHH
Confidence 678888999999999999999999987532 222333334455 8999999999
Q ss_pred HHHhCCCCH--HHHHHHHHHHHHCCChHHHHHHHH--HHHhhCCCChhHHhhhhh
Q 013800 384 AVQASPADS--HVLAAYACFLWETEEDEDDSKSSD--QFQQVAPIRQGAVTTANV 434 (436)
Q Consensus 384 al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~l~p~~~~a~~~an~ 434 (436)
+++..|+++ .++..+|+++++.|++++|.++|+ ++++..|+.......+.+
T Consensus 325 ~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~l 379 (409)
T TIGR00540 325 QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADA 379 (409)
T ss_pred HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHH
Confidence 999999999 889999999999999999999999 577788887765544444
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.6e-16 Score=148.98 Aligned_cols=200 Identities=14% Similarity=0.026 Sum_probs=155.0
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+...+...+..++.+.+ .++.+|..+|.++...|++++|+..|+++++++|++..++.++|.++...|++++|++.|++
T Consensus 79 ~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~ 157 (296)
T PRK11189 79 LRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLA 157 (296)
T ss_pred CHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33467778999999999 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG 337 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g 337 (436)
+++.+|+++.....+ .+ ....+++++|+..|.+++...+.+ .|. ++ .++...|
T Consensus 158 al~~~P~~~~~~~~~-~l-~~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~----------------------~~~~~lg 210 (296)
T PRK11189 158 FYQDDPNDPYRALWL-YL-AESKLDPKQAKENLKQRYEKLDKE--QWG-WN----------------------IVEFYLG 210 (296)
T ss_pred HHHhCCCCHHHHHHH-HH-HHccCCHHHHHHHHHHHHhhCCcc--ccH-HH----------------------HHHHHcc
Confidence 999999998422222 12 233346999999998877654332 222 34 2223334
Q ss_pred CHHH------HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCC
Q 013800 338 DLEG------AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP-ADSHVLAAYACFLWETE 406 (436)
Q Consensus 338 ~~~~------A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g 406 (436)
++.+ +.+.++..+++.|..+++|+++|.++...|+ +++|+.+|+++++.+| +..+..+.+..+....+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~-~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 211 KISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD-LDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred CCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 4322 2233344456677888999999999999999 9999999999999997 65666665655544433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-16 Score=147.86 Aligned_cols=226 Identities=19% Similarity=0.134 Sum_probs=187.2
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+..++..|-..++.+++ =++.+..+.|++.+..|++++|.+.|++++..+....++++++|..+..+|+.++|+++|-+
T Consensus 471 ~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~k 549 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLK 549 (840)
T ss_pred chhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHH
Confidence 45577778888888888 57888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
.-.+--++.++++.++.+|..+. +..+|+++|.++..+-|+++.++..|+.+|-..|+..+|.+.+-+.+.-
T Consensus 550 lh~il~nn~evl~qianiye~le-d~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~ 628 (840)
T KOG2003|consen 550 LHAILLNNAEVLVQIANIYELLE-DPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIET 628 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhh-CHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHH
Confidence 99999999999999999998887 4999999999999999999999999997777777776666654432221
Q ss_pred -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013800 331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET 405 (436)
Q Consensus 331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 405 (436)
..|....-+++|+.+|+++--+.|+.......++.|+.+.|+ |++|.+.|+......|.+.+.+..|..+.-.+
T Consensus 629 iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn-yqka~d~yk~~hrkfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 629 IEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN-YQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHhCccchHHHHHHHHHhccc
Confidence 445566667777777777777777777777777777777777 77777777777777777777776666666665
Q ss_pred C
Q 013800 406 E 406 (436)
Q Consensus 406 g 406 (436)
|
T Consensus 708 g 708 (840)
T KOG2003|consen 708 G 708 (840)
T ss_pred c
Confidence 5
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.9e-16 Score=150.18 Aligned_cols=236 Identities=14% Similarity=0.127 Sum_probs=209.2
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
.+.....+..++..++|.+-.++.+..++.+|-+..++...-.++...|+..+=...-.+.+...|+.+..|+..|..|+
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHH
Confidence 45566677788899999999999999999999988777655559999999888888888999999999999999998888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHH
Q 013800 278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEY 345 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~ 345 (436)
..++ +.+|..+|-|+..++|....+|..+|..+...+.-++|+..|..+.+. .-|.+.+++.-|..+
T Consensus 324 ~i~k-~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 324 MIGK-YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred HhcC-cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 8865 999999999999999999999999999999999999999999987776 567778999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013800 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA-------DSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a 418 (436)
|.+|+.+.|.++-++..+|.+.+..+. |.+|..+|+.+++.-+. ....+.+||.++.+++.+++|+.+|+++
T Consensus 403 f~~A~ai~P~Dplv~~Elgvvay~~~~-y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 403 FKQALAIAPSDPLVLHELGVVAYTYEE-YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHhcCCCcchhhhhhhheeehHhh-hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999999999999999 99999999999953322 2345899999999999999999999999
Q ss_pred HhhCCCChhHHh-hhhhc
Q 013800 419 QQVAPIRQGAVT-TANVY 435 (436)
Q Consensus 419 l~l~p~~~~a~~-~an~y 435 (436)
+.+.|.+..... +|-+|
T Consensus 482 L~l~~k~~~~~asig~iy 499 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIY 499 (611)
T ss_pred HHcCCCchhHHHHHHHHH
Confidence 999999888776 44444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-15 Score=140.21 Aligned_cols=216 Identities=13% Similarity=0.096 Sum_probs=188.4
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 279 (436)
-...+|.-++..|++..|+..|..+++.+|++..+++..|.+|+.+|+-..|+..+.+++++.|+...+....|.++.++
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence 34555666667799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 280 HRDQHRALTYFERAALAAPQDSNI---LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
|. +++|+..|+++++-+|.+... .-.++.+. +-..+..+ + ..+...|++..|+++....|++.|-+
T Consensus 120 Ge-le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~-------e~~~l~~q-l--~s~~~~GD~~~ai~~i~~llEi~~Wd 188 (504)
T KOG0624|consen 120 GE-LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQ-------EHWVLVQQ-L--KSASGSGDCQNAIEMITHLLEIQPWD 188 (504)
T ss_pred cc-HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHH-------HHHHHHHH-H--HHHhcCCchhhHHHHHHHHHhcCcch
Confidence 86 999999999999999965433 33333111 00111100 0 45667899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
+..+...+.||...|+ ...|+..++.+-++..++.+.++.++.+++..|+.+.++...+.++.++|++..
T Consensus 189 a~l~~~Rakc~i~~~e-~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~ 258 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGE-PKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL 258 (504)
T ss_pred hHHHHHHHHHHHhcCc-HHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999754
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-15 Score=156.99 Aligned_cols=253 Identities=17% Similarity=0.181 Sum_probs=214.9
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDD--SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA 258 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a 258 (436)
.+..+|..+-.++- .....|..-+..+...++ ++.|...|...+...|++..+++..|.+.+..++|..|+.+|+++
T Consensus 112 ~at~~~~~A~ki~m-~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~a 190 (1018)
T KOG2002|consen 112 KATLLFDLADKIDM-YEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKA 190 (1018)
T ss_pred HHHHHhhHHHHhhc-cCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 56677777776666 344455555555555555 499999999999999999999999999999999999999999999
Q ss_pred HHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCc---hHHHHHHHHHHHH----
Q 013800 259 TMADPG-DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDD---GEDDKAQEEHIQV---- 330 (436)
Q Consensus 259 l~~~p~-~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~---- 330 (436)
+.++|. -++....+|.|++.++. .+.|+..|+++++++|.++.++..||.+.....+. ..+...+.+++..
T Consensus 191 l~inp~~~aD~rIgig~Cf~kl~~-~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~n 269 (1018)
T KOG2002|consen 191 LRINPACKADVRIGIGHCFWKLGM-SEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNEN 269 (1018)
T ss_pred HhcCcccCCCccchhhhHHHhccc-hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCC
Confidence 999997 46777888999999986 99999999999999999999999999888777665 4455555555444
Q ss_pred --------hHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHH
Q 013800 331 --------LPIQSKGDLEGAEEYFSRAILANPG---DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD-SHVLAAY 398 (436)
Q Consensus 331 --------~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~-~~~~~~l 398 (436)
..++-.|+|+.+..+...++...-. -.+.++.+|+++..+|+ |++|..+|.++++.+|++ ...++.+
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd-~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGD-FEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHccCCCCccccccch
Confidence 6677789999999999999987633 35669999999999999 999999999999999998 7788999
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhhcC
Q 013800 399 ACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANVYA 436 (436)
Q Consensus 399 a~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~-~an~ya 436 (436)
|+.++..|+.+.++.+|++++...|+..+... ++.+||
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya 387 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA 387 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence 99999999999999999999999999887665 776664
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.6e-15 Score=149.41 Aligned_cols=223 Identities=19% Similarity=0.172 Sum_probs=190.8
Q ss_pred ChhhhhhHhhhhhhCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 013800 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE--------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA------- 261 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 261 (436)
...+...++..+..+|+|+.|+..++.++++ .|.-......+|.+|..++++.+|+..|++|+.+
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3466677999999999999999999999998 5655566677999999999999999999999986
Q ss_pred -CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--
Q 013800 262 -DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA--------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-- 330 (436)
Q Consensus 262 -~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 330 (436)
+|..+.++.+||.+|...|+ +++|..++++|+++. |.-...+.+++.++...+.+++|..+++..++.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GK-f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGK-FAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCC-hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 34456789999999988875 999999999999874 233456678899999999999999999976665
Q ss_pred ------------------hHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013800 331 ------------------LPIQSKGDLEGAEEYFSRAILAN--------PGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 331 ------------------~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~d~~~A~~~~~~a 384 (436)
.+|..+|++++|.++|++|+.+. +.....++.+|..+.+.++ +.+|...|.++
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~-~~~a~~l~~~~ 435 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK-YEEAEQLFEEA 435 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc-cchHHHHHHHH
Confidence 89999999999999999999874 3346788999999999998 99999999998
Q ss_pred HHhC----C---CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 385 VQAS----P---ADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 385 l~~~----p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
+.+. | +-...+.+|+.+|..+|++++|+++..+++..
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 7653 3 33478899999999999999999999998854
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.5e-15 Score=136.86 Aligned_cols=180 Identities=14% Similarity=0.057 Sum_probs=142.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--
Q 013800 228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG---ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSN-- 302 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~-- 302 (436)
++..+..++.+|..+...|++++|+..|++++..+|.++ .+++.+|.++...++ +++|+..|+++++..|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGD-YAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHCcCCCchH
Confidence 345567888888888888888888888888888888765 567888888888764 88888888888888887665
Q ss_pred -HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHH
Q 013800 303 -ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIM-----------------SQYA 364 (436)
Q Consensus 303 -~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~la 364 (436)
+++.+|.++..... .++...|++++|++.|++++..+|++..++ ..+|
T Consensus 108 ~a~~~~g~~~~~~~~--------------~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a 173 (235)
T TIGR03302 108 YAYYLRGLSNYNQID--------------RVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVA 173 (235)
T ss_pred HHHHHHHHHHHHhcc--------------cccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777744433200 222334889999999999999999886443 3678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013800 365 KLVWELHHDHDKALCYFERAVQASPAD---SHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 365 ~~~~~~g~d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 423 (436)
.+++..|+ +.+|+..|++++...|+. ..+++.++.++..+|++++|..+++......|
T Consensus 174 ~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 174 RFYLKRGA-YVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHcCC-hHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 88999999 999999999999997764 58999999999999999999999888776655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-14 Score=152.37 Aligned_cols=249 Identities=13% Similarity=0.014 Sum_probs=188.6
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+...+..++.+++.-.+ ........+|.++...|++++|+++|+++++.+|+++.++..++.++...++.++|++.+++
T Consensus 83 ~~~~A~~~~eka~~p~n-~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~ 161 (822)
T PRK14574 83 RDQEVIDVYERYQSSMN-ISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATE 161 (822)
T ss_pred CcHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 44577888888883223 34455555688999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHH---------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI--------- 328 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--------- 328 (436)
++..+|.+... ..++.++...++ ..+|+..|+++++.+|++..++..+..++...|-...|.++..+..
T Consensus 162 l~~~dp~~~~~-l~layL~~~~~~-~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~ 239 (822)
T PRK14574 162 LAERDPTVQNY-MTLSYLNRATDR-NYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYR 239 (822)
T ss_pred hcccCcchHHH-HHHHHHHHhcch-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHH
Confidence 99999996655 556666655554 7679999999999999999999999999999988877777665100
Q ss_pred ---------------------------------------HH---------------------------------------
Q 013800 329 ---------------------------------------QV--------------------------------------- 330 (436)
Q Consensus 329 ---------------------------------------~~--------------------------------------- 330 (436)
..
T Consensus 240 ~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~ 319 (822)
T PRK14574 240 QLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAME 319 (822)
T ss_pred HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 00
Q ss_pred ---------------h----------------------------------------HHHHcCCHHHHHHHHHHHHHhCC-
Q 013800 331 ---------------L----------------------------------------PIQSKGDLEGAEEYFSRAILANP- 354 (436)
Q Consensus 331 ---------------~----------------------------------------~~~~~g~~~~A~~~~~~al~~~p- 354 (436)
. .+...+++++|..++++..+..|
T Consensus 320 ~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~ 399 (822)
T PRK14574 320 AEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPY 399 (822)
T ss_pred hcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc
Confidence 2 23334455555555555444222
Q ss_pred --------------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013800 355 --------------GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 355 --------------~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (436)
+..++...++.++...|+ +.+|++.+++.+...|.|+.++..+|.++...|.+.+|...++.++.
T Consensus 400 ~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd-l~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 400 QVGVYGLPGKEPNDDWIEGQTLLVQSLVALND-LPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred EEeccCCCCCCCCccHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 223455667777777777 88888888888888888888888888888888888888888877777
Q ss_pred hCCCChhHHh
Q 013800 421 VAPIRQGAVT 430 (436)
Q Consensus 421 l~p~~~~a~~ 430 (436)
+.|....+..
T Consensus 479 l~P~~~~~~~ 488 (822)
T PRK14574 479 LAPRSLILER 488 (822)
T ss_pred hCCccHHHHH
Confidence 7777655443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=129.25 Aligned_cols=126 Identities=17% Similarity=0.142 Sum_probs=83.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 013800 218 EEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA 297 (436)
Q Consensus 218 ~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~ 297 (436)
..+|+++++++|++ +..+|.++...|++++|+.+|++++.++|.+..+|..+|.++...++ +++|+.+|++++.++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE-YTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcC
Confidence 45566666666653 44566666667777777777777776677666666666666666654 666666666666666
Q ss_pred CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 298 PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE 369 (436)
Q Consensus 298 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 369 (436)
|+++.+++++| .++...|++++|+..|++++++.|+++..+.+++.+...
T Consensus 89 p~~~~a~~~lg----------------------~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 89 ASHPEPVYQTG----------------------VCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCcHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 66666666666 666666666666666666666666666666666665544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-14 Score=135.16 Aligned_cols=187 Identities=14% Similarity=0.077 Sum_probs=152.2
Q ss_pred ChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 013800 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE---SWM 270 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 270 (436)
....+..+|..+...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|+++. +++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 446677788888888999999999999999999876 68899999999999999999999999999998765 789
Q ss_pred HHHHHHHHHc-------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHH
Q 013800 271 QYAKLVWELH-------RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAE 343 (436)
Q Consensus 271 ~la~~~~~~~-------~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~ 343 (436)
.+|.+++... +++++|+..|++++..+|++..++..+..+....+...... .....++...|++.+|+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~-----~~~a~~~~~~g~~~~A~ 186 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKE-----LYVARFYLKRGAYVAAI 186 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCChHHHH
Confidence 9999988751 24899999999999999998776644443322211111000 00017788999999999
Q ss_pred HHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013800 344 EYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389 (436)
Q Consensus 344 ~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p 389 (436)
..|++++...|+. +++++.+|.++..+|+ +++|..+++......|
T Consensus 187 ~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~-~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 187 NRFETVVENYPDTPATEEALARLVEAYLKLGL-KDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCC
Confidence 9999999997764 6899999999999999 9999999888776655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=137.35 Aligned_cols=232 Identities=14% Similarity=0.118 Sum_probs=195.2
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHH----------------------------------HHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLL----------------------------------LRNYAQL 241 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~----------------------------------~~~la~~ 241 (436)
.+....+.+|.+++..|++.+|+..|+++.-++|.+... |+.-+..
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQL 309 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhh
Confidence 566778888999999999999999999998888866544 3333444
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013800 242 LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
++..+++..|+.+.+++|..+|.+..++...|.++...++ .++|+-.|+.|..+.|-+-+.+..+..+|...|.+.+|.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R-~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALER-HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccc-hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 4555667788888888888888888888888888888886 888888899998888888888888888888888888888
Q ss_pred HHHHHHHHH-----hH---------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 322 KAQEEHIQV-----LP---------IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 322 ~~~~~~~~~-----~~---------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
-.....++. .. +....--++|.+.++++++++|....+...+|.++...|. +.+++.++++++..
T Consensus 389 ~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~-~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 389 ALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGP-TKDIIKLLEKHLII 467 (564)
T ss_pred HHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCc-cchHHHHHHHHHhh
Confidence 888766665 22 2223345899999999999999999999999999999999 99999999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 388 SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 388 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
.|+ ...+..||.++..++.+++|+.+|..++.++|+...+..
T Consensus 468 ~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~ 509 (564)
T KOG1174|consen 468 FPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLR 509 (564)
T ss_pred ccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHH
Confidence 988 567899999999999999999999999999999776543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-14 Score=141.70 Aligned_cols=229 Identities=12% Similarity=0.072 Sum_probs=186.8
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNY-AQLLQKKGDLYRAEDYYNHATMADPGDGESW-MQYAKLVW 277 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~ 277 (436)
.....|.+....|+++.|++.+.+.-+..+ ++..++.+ +.+....|+++.|..+|.++.+.+|++.... ...+.++.
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL 164 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 345567777788999999988887666543 34444444 6666999999999999999999999986444 34477877
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---------------------------
Q 013800 278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------------------------- 330 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------------------- 330 (436)
..+ ++++|+..++++++..|+++.++..++.++...|+++++..++....+.
T Consensus 165 ~~g-~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 165 ARN-ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred HCC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 776 5999999999999999999999999999999999999999655522210
Q ss_pred ---------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013800 331 ---------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 331 ---------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~ 383 (436)
..+...|+.++|...++++++. +.++.....++.+ ..++ .+++++.+++
T Consensus 244 ~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~-~~~al~~~e~ 319 (398)
T PRK10747 244 GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNN-PEQLEKVLRQ 319 (398)
T ss_pred CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCC-hHHHHHHHHH
Confidence 6777889999999999999995 4456655555554 3367 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHhhhhh
Q 013800 384 AVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVTTANV 434 (436)
Q Consensus 384 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~an~ 434 (436)
.++.+|+++..+..+|.++...+++++|.++|++++++.|+.......+.+
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~ 370 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADA 370 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999997764444433
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.6e-16 Score=145.15 Aligned_cols=244 Identities=11% Similarity=0.015 Sum_probs=202.1
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
.+.++.-.+..++.+.+ +++..|.+.+..++..|+|++|.-.+++.++++|.....+...++++..+++..+|.+.++.
T Consensus 64 ~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~ 142 (486)
T KOG0550|consen 64 TYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKS 142 (486)
T ss_pred hHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhh
Confidence 77788888999999998 77888999999999999999999999999999888887777788888777777777655542
Q ss_pred HH------------HhC------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchH
Q 013800 258 AT------------MAD------PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGE 319 (436)
Q Consensus 258 al------------~~~------p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 319 (436)
.- .+- |....+...-+.|+...+ ++++|...--..+++++.+.++++..|.++...++.+.
T Consensus 143 ~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~-~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~k 221 (486)
T KOG0550|consen 143 KQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLG-DYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADK 221 (486)
T ss_pred hhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcc-cchhHHHHHHHHHhcccchhHHHHhcccccccccchHH
Confidence 21 001 222334455566666665 48888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHH------------------------hHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhc
Q 013800 320 DDKAQEEHIQV------------------------LPIQSKGDLEGAEEYFSRAILANPGD----GEIMSQYAKLVWELH 371 (436)
Q Consensus 320 A~~~~~~~~~~------------------------~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g 371 (436)
+...+++.+.. .-.++.|++..|.++|..+|.++|++ +..|.++|.+...+|
T Consensus 222 a~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLg 301 (486)
T KOG0550|consen 222 AINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLG 301 (486)
T ss_pred HHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccC
Confidence 88888765544 66778899999999999999999975 567999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 372 HDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 372 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
+ ..+|+..+..++.+++....++...|.++..++++++|++.|++++++...
T Consensus 302 r-l~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 302 R-LREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred C-chhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9 999999999999999999999999999999999999999999999998655
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-14 Score=142.87 Aligned_cols=243 Identities=18% Similarity=0.183 Sum_probs=210.3
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+++.+-.++.++....+ ....|+.-.++..-+++.++|+.+++++++..|+....|+++|+++.++++.+.|.+.|..
T Consensus 633 e~eraR~llakar~~sg--TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~ 710 (913)
T KOG0495|consen 633 ELERARDLLAKARSISG--TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQ 710 (913)
T ss_pred cHHHHHHHHHHHhccCC--cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 55667778888777554 5678888888888889999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
.++..|.....|..++.+-...++ .-+|...++++.-.+|++...|.....+..+.|+.+.|...+.++++.
T Consensus 711 G~k~cP~~ipLWllLakleEk~~~-~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~L 789 (913)
T KOG0495|consen 711 GTKKCPNSIPLWLLLAKLEEKDGQ-LVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLL 789 (913)
T ss_pred ccccCCCCchHHHHHHHHHHHhcc-hhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchh
Confidence 999999999999999988777775 999999999999999999999999999999999999988888888876
Q ss_pred -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013800 331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET 405 (436)
Q Consensus 331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 405 (436)
.+.-.-++ ...+..|++....|+.++...|..++...+ +++|.+.|.+++.++|+++++|..+-.++...
T Consensus 790 WaEaI~le~~~~r----kTks~DALkkce~dphVllaia~lfw~e~k-~~kar~Wf~Ravk~d~d~GD~wa~fykfel~h 864 (913)
T KOG0495|consen 790 WAEAIWLEPRPQR----KTKSIDALKKCEHDPHVLLAIAKLFWSEKK-IEKAREWFERAVKKDPDNGDAWAWFYKFELRH 864 (913)
T ss_pred HHHHHHhccCccc----chHHHHHHHhccCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHccCCccchHHHHHHHHHHHh
Confidence 11111122 233455666677889999999999999999 99999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCChhH
Q 013800 406 EEDEDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 406 g~~~~A~~~~~~al~l~p~~~~a 428 (436)
|..++-.++|.++..-.|.|...
T Consensus 865 G~eed~kev~~~c~~~EP~hG~~ 887 (913)
T KOG0495|consen 865 GTEEDQKEVLKKCETAEPTHGEL 887 (913)
T ss_pred CCHHHHHHHHHHHhccCCCCCcH
Confidence 99999999999999999998763
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-15 Score=128.31 Aligned_cols=127 Identities=17% Similarity=0.109 Sum_probs=114.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 013800 252 EDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331 (436)
Q Consensus 252 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 331 (436)
..+|+++++++|++ +..+|.++...|+ +++|+.+|++++.++|.+..++..+| .
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~lg----------------------~ 66 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGD-YSRAVIDFSWLVMAQPWSWRAHIALA----------------------G 66 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHH----------------------H
Confidence 56889999999885 5678888888875 99999999999999999999999999 8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013800 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET 405 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 405 (436)
++...|++++|+..|+++++++|+++.+++++|.++..+|+ +++|+..|++++.+.|+++..+.+++.+...+
T Consensus 67 ~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~-~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 67 TWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGE-PGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999 99999999999999999999998888776543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.3e-14 Score=137.87 Aligned_cols=204 Identities=16% Similarity=0.075 Sum_probs=169.4
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH---PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 272 (436)
+++-++..+|.++...|+.+.+...+.++.+..|.+ .+.....+.++...|++++|+..++++++.+|.+..++..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~- 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL- 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-
Confidence 566778888888888899999999999998887755 4667788999999999999999999999999999987775
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHH
Q 013800 273 AKLVWELHR---DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRA 349 (436)
Q Consensus 273 a~~~~~~~~---d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 349 (436)
+..++..+. ....+...+.......|.....+..++ .++..+|++++|+..++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a----------------------~~~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLA----------------------FGLEEAGQYDRAEEAARRA 140 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHH
Confidence 545444432 234444444443345566677777788 8888999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013800 350 ILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS----HVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 350 l~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 423 (436)
++++|+++.++..+|.+++..|+ +++|+.++++++...|.++ ..+..++.++...|++++|+..|++++...|
T Consensus 141 l~~~p~~~~~~~~la~i~~~~g~-~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 141 LELNPDDAWAVHAVAHVLEMQGR-FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 99999999999999999999999 9999999999999887433 3567899999999999999999999987665
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.3e-14 Score=140.51 Aligned_cols=211 Identities=18% Similarity=0.195 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 214 SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-DGESWMQYAKLVWELHRDQHRALTYFER 292 (436)
Q Consensus 214 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~d~~~A~~~~~~ 292 (436)
..+++..++++++.+|.|+.+.+.++.-|...++.+.|.++.++++++++. ++.+|..+|.++...++ +.+|+...+.
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr-~~~Al~vvd~ 538 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKR-LKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh-hHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999654 78999999999888875 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHH----------------------------------------------
Q 013800 293 AALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE---------------------------------------------- 326 (436)
Q Consensus 293 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~---------------------------------------------- 326 (436)
++.-.|+|.........+....++.+++..++..
T Consensus 539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 9988887655544444444445555544444331
Q ss_pred ---------------------------------------------------------HHHH------------hHHHHcC
Q 013800 327 ---------------------------------------------------------HIQV------------LPIQSKG 337 (436)
Q Consensus 327 ---------------------------------------------------------~~~~------------~~~~~~g 337 (436)
+.+. .++..+|
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKG 698 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH
Confidence 1111 5666778
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013800 338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALC--YFERAVQASPADSHVLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 415 (436)
++.+|.+.|..|+.++|+++.....+|.++.+.|+ ..-|.. ++..+++++|.++++|+.+|.++..+|+.++|.++|
T Consensus 699 ~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~-~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 699 QLEEAKEAFLVALALDPDHVPSMTALAELLLELGS-PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 99999999999999999999999999999999998 777777 999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCh
Q 013800 416 DQFQQVAPIRQ 426 (436)
Q Consensus 416 ~~al~l~p~~~ 426 (436)
..++++.+..+
T Consensus 778 ~aa~qLe~S~P 788 (799)
T KOG4162|consen 778 QAALQLEESNP 788 (799)
T ss_pred HHHHhhccCCC
Confidence 99999975543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-13 Score=127.02 Aligned_cols=227 Identities=15% Similarity=0.098 Sum_probs=151.6
Q ss_pred cCCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHH
Q 013800 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQKKGDLYRA 251 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~~g~~~~A 251 (436)
.+|+.|...|.--+..++ ....+...+|+++...|+.+.|+.+-+..++ .|+.. .++..+|.-|+..|-++.|
T Consensus 49 ~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred cCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467777777666666666 5667777788888888888888876655443 34332 4667777778888888888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 013800 252 EDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331 (436)
Q Consensus 252 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 331 (436)
+..|...+....--..++..+..+|.... +|++|+..-++.+++.++..... ++.+++++. .
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~tr-eW~KAId~A~~L~k~~~q~~~~e--IAqfyCELA---------------q 188 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATR-EWEKAIDVAERLVKLGGQTYRVE--IAQFYCELA---------------Q 188 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHcCCccchhH--HHHHHHHHH---------------H
Confidence 88887776655556667777777766654 58888888888777777643322 222222221 4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCChHH
Q 013800 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD-SHVLAAYACFLWETEEDED 410 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~ 410 (436)
.+....+.++|+..+++|++.+|+...+-..+|.+....|+ |+.|++.++.+++.+|+. +++.-.|..+|.++|+.++
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~-y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 189 QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGD-YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccc-hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 44455666777777777777777777777777777777777 777777777777777665 3566666677777777777
Q ss_pred HHHHHHHHHhhCCC
Q 013800 411 DSKSSDQFQQVAPI 424 (436)
Q Consensus 411 A~~~~~~al~l~p~ 424 (436)
.+..+.++.+..+.
T Consensus 268 ~~~fL~~~~~~~~g 281 (389)
T COG2956 268 GLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHHHHHHccCC
Confidence 77777666665544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-15 Score=136.66 Aligned_cols=220 Identities=15% Similarity=0.101 Sum_probs=184.2
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
.|.+++-.++..+.-.+ ..+.+..+..+|.+..+...|+..|.+.++..|.+...+...|.++..++++++|.++|+.
T Consensus 238 m~r~AekqlqssL~q~~--~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~ 315 (478)
T KOG1129|consen 238 MPRRAEKQLQSSLTQFP--HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKL 315 (478)
T ss_pred ChhhhHHHHHHHhhcCC--chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHH
Confidence 44566666666555443 4577888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
+++++|.+.++...+|.-|+..++ .+-|+.+|++.+++.-.+++.+.++|.|....++++-++..+++++..
T Consensus 316 vlk~~~~nvEaiAcia~~yfY~~~-PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~a 394 (478)
T KOG1129|consen 316 VLKLHPINVEAIACIAVGYFYDNN-PEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQA 394 (478)
T ss_pred HHhcCCccceeeeeeeeccccCCC-hHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchh
Confidence 888888888888888877777764 888888888888888888888888888888888888888877776655
Q ss_pred --------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 331 --------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 331 --------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
.+....|++.-|..+|+-++..++++.+++++||.+-.+.|+ .++|..++..|-...|+-.+..++++.+
T Consensus 395 aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~-i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 395 ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD-ILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred hhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc-hHHHHHHHHHhhhhCccccccccceeEE
Confidence 444567899999999999999999999999999999999999 9999999999999999988887777644
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-13 Score=133.87 Aligned_cols=109 Identities=12% Similarity=0.097 Sum_probs=103.4
Q ss_pred hhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013800 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 281 (436)
...|+..+..|+|+.|+.+|..+|.++|.+...|.+...+|..+|+|++|+..-.+.++++|.=+..|..+|..+..+++
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence 34678888999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 282 DQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
|++|+..|.+.|+.+|++......++.+.
T Consensus 86 -~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 -YEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred -HHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999999999999999999998888776
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.9e-14 Score=126.59 Aligned_cols=124 Identities=12% Similarity=0.149 Sum_probs=96.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHH
Q 013800 245 KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ 324 (436)
Q Consensus 245 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 324 (436)
.++.++++..++++++.+|++...|..+|.++...++ +++|+..|+++++++|+++.++..+|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~-~~~A~~a~~~Al~l~P~~~~~~~~lA---------------- 114 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRND-YDNALLAYRQALQLRGENAELYAALA---------------- 114 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------
Confidence 5667778888888888888888888888877777764 88888888888888888888888887
Q ss_pred HHHHHHhH-HHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 325 EEHIQVLP-IQSKGD--LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 325 ~~~~~~~~-~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
.+ +...|+ +++|...++++++.+|+++.++.++|.+++..|+ +++|+.+|++++++.|.+.
T Consensus 115 ------~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~-~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 115 ------TVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQAD-YAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred ------HHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCc
Confidence 43 345555 4788888888888888888888888888888888 8888888888888776654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-13 Score=130.53 Aligned_cols=215 Identities=16% Similarity=0.186 Sum_probs=174.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-----------------
Q 013800 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK----------------- 274 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~----------------- 274 (436)
.-+..+..++-.-...-|++...+..+|.+++..|++.+|+..|+++.-++|......-.+|.
T Consensus 212 hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~ 291 (564)
T KOG1174|consen 212 HSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDY 291 (564)
T ss_pred cchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHH
Confidence 334455556666677889999999999999999999999999999999999987544433333
Q ss_pred -----------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013800 275 -----------------LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 275 -----------------~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
++|..+ ++..|+.+-+|+|+.+|.+..++...|.++...++.++|.-.++.+...
T Consensus 292 Lf~~~~~ta~~wfV~~~~l~~~K-~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~ 370 (564)
T KOG1174|consen 292 LFAKVKYTASHWFVHAQLLYDEK-KFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI 370 (564)
T ss_pred HHhhhhcchhhhhhhhhhhhhhh-hHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH
Confidence 334443 3788888889999999999999999999999999998888888765543
Q ss_pred -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYA-KLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
.+|...|++.+|......+++.-|.++.++..+| .++...-.--++|.+++++++.+.|....+...+|.++..
T Consensus 371 Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~ 450 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV 450 (564)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh
Confidence 7788889999999988889988888888888886 4544332214899999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhCCCChh
Q 013800 405 TEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 405 ~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
.|.+++++..+++.+...|+-..
T Consensus 451 Eg~~~D~i~LLe~~L~~~~D~~L 473 (564)
T KOG1174|consen 451 EGPTKDIIKLLEKHLIIFPDVNL 473 (564)
T ss_pred hCccchHHHHHHHHHhhccccHH
Confidence 99999999999999998877543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-13 Score=144.60 Aligned_cols=197 Identities=14% Similarity=0.099 Sum_probs=169.3
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
..+......+.+..+.|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++.-.|........+|.+
T Consensus 32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~l 111 (822)
T PRK14574 32 AMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARA 111 (822)
T ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 56667777888889999999999999999999999965545889999999999999999999994344455555556878
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
+...++ +++|++.|+++++.+|+++.++..++ .++...++.++|++.+++++..+|.
T Consensus 112 y~~~gd-yd~Aiely~kaL~~dP~n~~~l~gLa----------------------~~y~~~~q~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 112 YRNEKR-WDQALALWQSSLKKDPTNPDLISGMI----------------------MTQADAGRGGVVLKQATELAERDPT 168 (822)
T ss_pred HHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHH----------------------HHHhhcCCHHHHHHHHHHhcccCcc
Confidence 888774 99999999999999999999998888 8888899999999999999999998
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q 013800 356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 356 ~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 417 (436)
+... ..++.++...++ ..+|+..++++++.+|++..++..+..++...|-...|.+..++
T Consensus 169 ~~~~-l~layL~~~~~~-~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 169 VQNY-MTLSYLNRATDR-NYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred hHHH-HHHHHHHHhcch-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 5554 556666666677 76799999999999999999999999999999999988766554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-13 Score=124.24 Aligned_cols=122 Identities=12% Similarity=0.131 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013800 282 DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 361 (436)
+.++++..++++++.+|++...|..+| .++...|++++|+..|+++++++|+++.++.
T Consensus 54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg----------------------~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~ 111 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQNSEQWALLG----------------------EYYLWRNDYDNALLAYRQALQLRGENAELYA 111 (198)
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 467777777777777777777777777 7777777777777777777777777777777
Q ss_pred HHHHHH-HHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 362 QYAKLV-WELHHD-HDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 362 ~la~~~-~~~g~d-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
.+|.++ ...|+. +++|+..++++++.+|++..++..+|..+.+.|++++|+.++++++++.|..
T Consensus 112 ~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 112 ALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 777765 444441 3777777777777777777777777777777777777777777777776553
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=144.56 Aligned_cols=158 Identities=14% Similarity=0.048 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAA 294 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al 294 (436)
.+++.-+.......|++++++++||.+....|++++|+.++++++++.|++..++..++.++.+.++ +++|+..+++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~-~eeA~~~~~~~l 147 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQG-IEAGRAEIELYF 147 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHh
Confidence 4555555666677899999999999999999999999999999999999999999999999999987 999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCH
Q 013800 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDH 374 (436)
Q Consensus 295 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~ 374 (436)
..+|++..+++.+| .++.+.|++++|+.+|++++..+|+++.++..+|.++...|+ .
T Consensus 148 ~~~p~~~~~~~~~a----------------------~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~-~ 204 (694)
T PRK15179 148 SGGSSSAREILLEA----------------------KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA-L 204 (694)
T ss_pred hcCCCCHHHHHHHH----------------------HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-H
Confidence 99999999999999 888899999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHH
Q 013800 375 DKALCYFERAVQASPADSHVLA 396 (436)
Q Consensus 375 ~~A~~~~~~al~~~p~~~~~~~ 396 (436)
++|...|+++++....-...+.
T Consensus 205 ~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 205 WRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHHHHHhhCcchHHHH
Confidence 9999999999998766555443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.7e-13 Score=130.76 Aligned_cols=243 Identities=14% Similarity=0.115 Sum_probs=208.8
Q ss_pred HHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 013800 183 PMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD 262 (436)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 262 (436)
..+--.|+++...+.-..|+.-+..+.+.+-++-|+..|..+++.+|....+|...+.+-..-|..+.-..++++++...
T Consensus 501 Ii~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~ 580 (913)
T KOG0495|consen 501 IIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC 580 (913)
T ss_pred HHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 34444555555544447899999999999999999999999999999999999999988888999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----------h
Q 013800 263 PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-----------L 331 (436)
Q Consensus 263 p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----------~ 331 (436)
|.....|..++.-++..| |...|...+.++++.+|++.++|+.-..+......+++|+.++.++... .
T Consensus 581 pkae~lwlM~ake~w~ag-dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~ 659 (913)
T KOG0495|consen 581 PKAEILWLMYAKEKWKAG-DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSAN 659 (913)
T ss_pred CcchhHHHHHHHHHHhcC-CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhH
Confidence 999999999999888886 6999999999999999999999999888888989999999988866554 5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Q 013800 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDD 411 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 411 (436)
+...+++.++|+.+++++++..|+....|..+|+++-++++ .+.|.+.|...+..-|.....|..++.+-...|..-.|
T Consensus 660 ~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~-ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rA 738 (913)
T KOG0495|consen 660 LERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMEN-IEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRA 738 (913)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHH-HHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhH
Confidence 55567888999999999999999999999999999998888 88888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhCCCChh
Q 013800 412 SKSSDQFQQVAPIRQG 427 (436)
Q Consensus 412 ~~~~~~al~l~p~~~~ 427 (436)
...+.++.-.+|....
T Consensus 739 R~ildrarlkNPk~~~ 754 (913)
T KOG0495|consen 739 RSILDRARLKNPKNAL 754 (913)
T ss_pred HHHHHHHHhcCCCcch
Confidence 8888888888877544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-13 Score=122.68 Aligned_cols=182 Identities=16% Similarity=0.113 Sum_probs=165.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFER 292 (436)
Q Consensus 213 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~ 292 (436)
+...+...+-+....+|++..+ .+++..+...|+-+.+..+..++...+|.+..++..+|...+..++ |.+|+..+++
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~-~~~A~~~~rk 125 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGN-FGEAVSVLRK 125 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcc-hHHHHHHHHH
Confidence 3345777777788889999999 9999999999999999999999999999999999889999888875 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 013800 293 AALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH 372 (436)
Q Consensus 293 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 372 (436)
+..+.|++..+|..+| .+|.+.|++++|...|.+++++.|.++.+.+|+|..+.-.|+
T Consensus 126 A~~l~p~d~~~~~~lg----------------------aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 126 AARLAPTDWEAWNLLG----------------------AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HhccCCCChhhhhHHH----------------------HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 9999999999999999 889999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013800 373 DHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 373 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 419 (436)
++.|..++..+...-+.+..+..+++.+...+|++++|.+...+-+
T Consensus 184 -~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 184 -LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred -HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 9999999999999888899999999999999999999977655433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-13 Score=135.82 Aligned_cols=198 Identities=18% Similarity=0.181 Sum_probs=169.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Q 013800 228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA--------DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA-- 297 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~-- 297 (436)
.|.-..+...++..|..+|++++|+..+++++.. .|.-......+|.+|..+++ +.+|+..|++|+.+.
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k-~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGK-YDEAVNLYEEALTIREE 273 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHH
Confidence 4655677888999999999999999999999998 55555666679999999986 999999999999873
Q ss_pred ------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--------------------hHHHHcCCHHHHHHHHHHHHH
Q 013800 298 ------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------------------LPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 298 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------------~~~~~~g~~~~A~~~~~~al~ 351 (436)
|.-+.++.+|+.++...|++++|..+++.++.. .++..++++++|+.+++++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 445677899999999999999999999987766 778889999999999999998
Q ss_pred hC--------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013800 352 AN--------PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS--------PADSHVLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 352 ~~--------p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~ 415 (436)
+. +.-+..+.+||.+|..+|+ +.+|.++|++|+++. +.....++++|..+.+.+++.+|.+.|
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk-~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGK-YKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 72 2346789999999999999 999999999999864 333578899999999999999999999
Q ss_pred HHHHhhC----CCChh
Q 013800 416 DQFQQVA----PIRQG 427 (436)
Q Consensus 416 ~~al~l~----p~~~~ 427 (436)
.++..+. |.+++
T Consensus 433 ~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHhCCCCCc
Confidence 9988764 55544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.4e-12 Score=116.65 Aligned_cols=228 Identities=16% Similarity=0.113 Sum_probs=190.1
Q ss_pred cCCCChHHHHHhhcCCCCCCCh----------------------hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHH
Q 013800 177 ERPVSPPMYLAMGLGISVPGFD----------------------DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLL 234 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~----------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 234 (436)
.+|..-++++..|.-++.++.. -+...+|.-|+..|-++.|+..|...++...--..+
T Consensus 64 ~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~A 143 (389)
T COG2956 64 EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGA 143 (389)
T ss_pred cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHH
Confidence 4777788888888877766432 456678889999999999999999998876666689
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGD-----GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYAC 309 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~ 309 (436)
+..+..+|....+|++|++..++..++.+.. +..+-.+|..+.... +.+.|...+++|++.+|+...+-..+|
T Consensus 144 lqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~-~~d~A~~~l~kAlqa~~~cvRAsi~lG- 221 (389)
T COG2956 144 LQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS-DVDRARELLKKALQADKKCVRASIILG- 221 (389)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhCccceehhhhhh-
Confidence 9999999999999999999999999998875 445666776665555 599999999999999999999999999
Q ss_pred HHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013800 310 FLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD-GEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 310 ~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~ 388 (436)
.++...|+|++|++.++.+++.+|+. +++...|..+|.++|+ .++.+..+.++.+..
T Consensus 222 ---------------------~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~-~~~~~~fL~~~~~~~ 279 (389)
T COG2956 222 ---------------------RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK-PAEGLNFLRRAMETN 279 (389)
T ss_pred ---------------------HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHcc
Confidence 88888999999999999999999876 5788888899999999 999999999999888
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHH
Q 013800 389 PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAV 429 (436)
Q Consensus 389 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~ 429 (436)
+. ..+...++.......-.+.|..++.+-+...|...+..
T Consensus 280 ~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~ 319 (389)
T COG2956 280 TG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFH 319 (389)
T ss_pred CC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHH
Confidence 77 45666677776677677788888888888888765543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4e-14 Score=133.69 Aligned_cols=232 Identities=14% Similarity=0.078 Sum_probs=194.0
Q ss_pred hhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013800 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 281 (436)
...|+.+++..+|.+|+..|..+|+..|+++..|.+.+.++...+++++|...+++.++++|.........+.++..++.
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHH
Confidence 34455677779999999999999999999999999999999999999999999999999999999988888888877763
Q ss_pred CHHHHHHHHHHHH------------HhC------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------h
Q 013800 282 DQHRALTYFERAA------------LAA------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------L 331 (436)
Q Consensus 282 d~~~A~~~~~~al------------~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~ 331 (436)
..+|...|+..- .+- |....+...-+.|+...+++++|...--..++. .
T Consensus 133 -~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~ 211 (486)
T KOG0550|consen 133 -LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGL 211 (486)
T ss_pred -HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccc
Confidence 666665544211 111 222344566788999999999998877765554 6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHH
Q 013800 332 PIQSKGDLEGAEEYFSRAILANPGDG------------EIMSQYAKLVWELHHDHDKALCYFERAVQASPADS----HVL 395 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~----~~~ 395 (436)
+++..++.+.|+..|+++|.++|+.. +.|...|.-.++.|+ +.+|.+.|..+|.++|++. ..|
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~-y~~A~E~Yteal~idP~n~~~naklY 290 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGN-YRKAYECYTEALNIDPSNKKTNAKLY 290 (486)
T ss_pred ccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccc-hhHHHHHHHHhhcCCccccchhHHHH
Confidence 77778999999999999999999763 467778888899999 9999999999999999865 678
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhhc
Q 013800 396 AAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANVY 435 (436)
Q Consensus 396 ~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~-~an~y 435 (436)
.+++.+..++|+.++|+...+.++.++|.+..+.. +|+.|
T Consensus 291 ~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 291 GNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877 55544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.5e-13 Score=138.87 Aligned_cols=149 Identities=13% Similarity=0.016 Sum_probs=138.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 013800 251 AEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV 330 (436)
Q Consensus 251 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 330 (436)
++.-+.......|.++.+++++|.+....+. +++|+..++.++++.|++..++..++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~-~~ea~~~l~~~~~~~Pd~~~a~~~~a---------------------- 127 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHR-SDEGLAVWRGIHQRFPDSSEAFILML---------------------- 127 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhhCCCcHHHHHHHH----------------------
Confidence 3333334445688999999999999999986 99999999999999999999999999
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 410 (436)
.++.+.+++++|+..+++++..+|+++..++.+|.++.++|+ +++|+.+|++++..+|+++.++..+|.++...|+.++
T Consensus 128 ~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~-~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~ 206 (694)
T PRK15179 128 RGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQ-SEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWR 206 (694)
T ss_pred HHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc-hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 888999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCC
Q 013800 411 DSKSSDQFQQVAP 423 (436)
Q Consensus 411 A~~~~~~al~l~p 423 (436)
|...|+++++...
T Consensus 207 A~~~~~~a~~~~~ 219 (694)
T PRK15179 207 ARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999998853
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-12 Score=132.59 Aligned_cols=237 Identities=18% Similarity=0.202 Sum_probs=192.1
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+..+|...+...+..++ .+..+|..+|.++.++|+.+++...+-.|-.++|.+.+.|..++....++|++.+|+-+|.+
T Consensus 154 ~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 45567777778888888 68899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCchHHHHHHH-------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD-----SNILAAYACFLWEMEDDGEDDKAQE------- 325 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~------- 325 (436)
||+.+|.+....+..+.+|.+.| ++..|...|.+++.+.|.. .......+..+...++.+.|.+.++
T Consensus 233 AI~~~p~n~~~~~ers~L~~~~G-~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 233 AIQANPSNWELIYERSSLYQKTG-DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHhcCCcchHHHHHHHHHHHHhC-hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 99999999999999999988887 4999999999999999831 1112233444444444444444443
Q ss_pred --------------------------------------------------------------------------------
Q 013800 326 -------------------------------------------------------------------------------- 325 (436)
Q Consensus 326 -------------------------------------------------------------------------------- 325 (436)
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~ 391 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLK 391 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhccc
Confidence
Q ss_pred ------------------------------HHHHH------------------------------hHHHHcCCHHHHHHH
Q 013800 326 ------------------------------EHIQV------------------------------LPIQSKGDLEGAEEY 345 (436)
Q Consensus 326 ------------------------------~~~~~------------------------------~~~~~~g~~~~A~~~ 345 (436)
+++.. .+|..+|.+++|+++
T Consensus 392 ~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 392 ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 11111 899999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCCChHHHHHHHH
Q 013800 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD---------SHVLAAYACFLWETEEDEDDSKSSD 416 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~ 416 (436)
|++++...|++.++...|+.++.++|+ .++|.+.+.....-++.+ ..+...+..++.+.|+.++=+....
T Consensus 472 y~kvl~~~p~~~D~Ri~Lasl~~~~g~-~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~ 550 (895)
T KOG2076|consen 472 YEKVLILAPDNLDARITLASLYQQLGN-HEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAS 550 (895)
T ss_pred HHHHHhcCCCchhhhhhHHHHHHhcCC-HHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999999999999999 999999998866333221 2566778889999999988554433
Q ss_pred H
Q 013800 417 Q 417 (436)
Q Consensus 417 ~ 417 (436)
.
T Consensus 551 ~ 551 (895)
T KOG2076|consen 551 T 551 (895)
T ss_pred H
Confidence 3
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.9e-13 Score=140.72 Aligned_cols=220 Identities=13% Similarity=0.070 Sum_probs=186.2
Q ss_pred CCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----
Q 013800 191 GISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG---- 266 (436)
Q Consensus 191 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---- 266 (436)
.+++ .+..+|..+...+...+++++|+..++.+++.+|+...+|+.+|.++.+.+++.+|... +++...+.+.
T Consensus 25 ~~~p-~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 25 NYSL-SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred cCCc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 4455 67788999999999999999999999999999999999999999999999988877666 6666655554
Q ss_pred ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 013800 267 ---------------ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331 (436)
Q Consensus 267 ---------------~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 331 (436)
.+++.+|.||-.+++ +++|...|+++++++|+++.++.++|..+... +.++|...+.+++ .
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~-~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV--~ 177 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNE-NKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI--Y 177 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH--H
Confidence 899999999999986 99999999999999999999999999999999 9999999999999 5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--------HH------------HHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013800 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQ--------YA------------KLVWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--------la------------~~~~~~g~d~~~A~~~~~~al~~~p~~ 391 (436)
.+...+++.++.+++.+.+..+|++.+.+.. ++ ..|...++ |++++..++.+|+.+|.+
T Consensus 178 ~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~-~~~~i~iLK~iL~~~~~n 256 (906)
T PRK14720 178 RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALED-WDEVIYILKKILEHDNKN 256 (906)
T ss_pred HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhh-hhHHHHHHHHHHhcCCcc
Confidence 6777889999999999999999997665321 12 34455555 999999999999999999
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 392 SHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 392 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
..+...++.+|. +.|.. ...++..+.+
T Consensus 257 ~~a~~~l~~~y~--~kY~~-~~~~ee~l~~ 283 (906)
T PRK14720 257 NKAREELIRFYK--EKYKD-HSLLEDYLKM 283 (906)
T ss_pred hhhHHHHHHHHH--HHccC-cchHHHHHHH
Confidence 999999999987 33333 4444444444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-12 Score=124.95 Aligned_cols=203 Identities=13% Similarity=0.085 Sum_probs=179.7
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+.+.+..+|..++.-+. ....+++++|..+..+|+.++|+.+|-+.-.+--+++++++.++.+|..+.+..+|++++.+
T Consensus 505 d~dka~~~ykeal~nda-sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDA-SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred cHHHHHHHHHHHHcCch-HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 34456677888877776 56789999999999999999999999998888788999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
+..+-|.++.++..+|.+|-..| |-.+|.+|+-...+..|-+.+..-.|+..|....-.++++.+++++-..
T Consensus 584 ~~slip~dp~ilskl~dlydqeg-dksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 584 ANSLIPNDPAILSKLADLYDQEG-DKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred hcccCCCCHHHHHHHHHHhhccc-chhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence 99999999999999998877665 6999999999999999999999999999999999999999999865433
Q ss_pred -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013800 331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~a 384 (436)
.++.+.|+|++|...|+..-+..|.+.+.+..|.++...+|- .+|.++-++.
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl--~d~key~~kl 719 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL--KDAKEYADKL 719 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc--hhHHHHHHHH
Confidence 788999999999999999999999999999999999888875 5555554443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-12 Score=126.82 Aligned_cols=160 Identities=15% Similarity=0.017 Sum_probs=138.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
|....+++..|..++..|++++|+..++..+...|+|+..+...+.++...++ ..+|++.+++++.++|+....+.++|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk-~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK-AKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999986 99999999999999999999999999
Q ss_pred HHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013800 309 CFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~ 388 (436)
..+.+.|++++|+..+++.+..+|+++..|..||.+|..+|+ ..+|..
T Consensus 382 ----------------------~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~-~~~a~~--------- 429 (484)
T COG4783 382 ----------------------QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN-RAEALL--------- 429 (484)
T ss_pred ----------------------HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc-hHHHHH---------
Confidence 888889999999999999999999999999999999999998 555544
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCChhHH
Q 013800 389 PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA-PIRQGAV 429 (436)
Q Consensus 389 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~ 429 (436)
..+..++..|++++|+..+.++.+.. .+|..++
T Consensus 430 --------A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~a 463 (484)
T COG4783 430 --------ARAEGYALAGRLEQAIIFLMRASQQVKLGFPDWA 463 (484)
T ss_pred --------HHHHHHHhCCCHHHHHHHHHHHHHhccCCcHHHH
Confidence 44555666677777777777766553 5555443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.4e-13 Score=111.84 Aligned_cols=117 Identities=19% Similarity=0.144 Sum_probs=81.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013800 219 EYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAP 298 (436)
Q Consensus 219 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p 298 (436)
+.|++++..+|++..+.+.+|.++...|++++|+..+++++..+|.++.+|..+|.++...++ +++|+.+|+++++.+|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE-YEEAIDAYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCC
Confidence 356677777777777777777777777777777777777777777777777777777666654 7777777777777777
Q ss_pred CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 299 QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 299 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
+++..++.+| .++...|++++|+..|+++++.+|++..
T Consensus 83 ~~~~~~~~la----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 83 DDPRPYFHAA----------------------ECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CChHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 7777777777 6666666777777777777777666544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=110.31 Aligned_cols=118 Identities=19% Similarity=0.139 Sum_probs=90.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH
Q 013800 253 DYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332 (436)
Q Consensus 253 ~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 332 (436)
+.|++++..+|++..+.+.+|.++...++ +++|+..|++++..+|.++.++..+| .+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~la----------------------~~ 60 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGR-YDEALKLFQLLAAYDPYNSRYWLGLA----------------------AC 60 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCCCcHHHHHHHH----------------------HH
Confidence 45677777777777777777777777764 77787777777777777777777777 66
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 013800 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHV 394 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~ 394 (436)
+...|++++|+.+|+++++.+|.++..++.+|.++...|+ +++|+..|+++++++|++...
T Consensus 61 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 61 CQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGE-PESALKALDLAIEICGENPEY 121 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhccccchH
Confidence 7777777777777777777777777777777777777777 777877777777777776553
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.7e-12 Score=110.89 Aligned_cols=176 Identities=18% Similarity=0.197 Sum_probs=158.8
Q ss_pred hHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013800 203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d 282 (436)
...++.+..|+.+.|..++++.....|....+....|..+...|++++|+++|+..++-+|.+..++...-.+...+|+
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK- 135 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK- 135 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC-
Confidence 3445667789999999999999999999999999999999999999999999999999999999998877767777776
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ 362 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (436)
.-+|++.+...++..+.|.++|..++ .+|...|+|++|.-+|++.+-+.|.++-.+..
T Consensus 136 ~l~aIk~ln~YL~~F~~D~EAW~eLa----------------------eiY~~~~~f~kA~fClEE~ll~~P~n~l~f~r 193 (289)
T KOG3060|consen 136 NLEAIKELNEYLDKFMNDQEAWHELA----------------------EIYLSEGDFEKAAFCLEELLLIQPFNPLYFQR 193 (289)
T ss_pred cHHHHHHHHHHHHHhcCcHHHHHHHH----------------------HHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 77999999999999999999999999 89999999999999999999999999999999
Q ss_pred HHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 363 YAKLVWELHH--DHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 363 la~~~~~~g~--d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
+|.+++-+|. ++.-|.++|.++++++|.+..+++.+-.+
T Consensus 194 lae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 194 LAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 9999988875 26789999999999999877777665444
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-13 Score=138.78 Aligned_cols=246 Identities=15% Similarity=0.090 Sum_probs=203.3
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHH-----------------------
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLL----------------------- 234 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~----------------------- 234 (436)
+...+...+-+++.+++ ..+.+|..+|.+|....+...|..+|++|.++++.++.+
T Consensus 473 ~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 34466778888999999 799999999999999889999999999999999876544
Q ss_pred -------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013800 235 -------------LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS 301 (436)
Q Consensus 235 -------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~ 301 (436)
|..+|..|...++...|+..|+.++..+|.+...|..+|.+|...|+ |.-|++.|.++..++|.+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr-y~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR-YSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc-eehHHHhhhhhHhcCcHhH
Confidence 44455566666777788888999999999999999999999999987 9999999999999999999
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHH---------------------------------------------------
Q 013800 302 NILAAYACFLWEMEDDGEDDKAQEEHIQV--------------------------------------------------- 330 (436)
Q Consensus 302 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------------------------------------------- 330 (436)
...+..+......|.+.++...+...++.
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~ 710 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQ 710 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999888733322
Q ss_pred ----------------------------------------------------------------------------hHHH
Q 013800 331 ----------------------------------------------------------------------------LPIQ 334 (436)
Q Consensus 331 ----------------------------------------------------------------------------~~~~ 334 (436)
+...
T Consensus 711 ~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~ 790 (1238)
T KOG1127|consen 711 SDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFL 790 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHH
Confidence 1111
Q ss_pred H----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013800 335 S----KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 335 ~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 410 (436)
. +.+...|+.++++++++..++...|+.||.+ -..|+ +.-|..+|-+.+...|.+.-.|.++|.+..+..+++.
T Consensus 791 ~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gn-va~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 791 LLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGN-VACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred HcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccch-hhhhhhhhhhhhhccccchhheeccceeEEecccHHH
Confidence 1 1233478888888888888888888888877 55577 8888888888888888888888888888888889999
Q ss_pred HHHHHHHHHhhCCCChh
Q 013800 411 DSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 411 A~~~~~~al~l~p~~~~ 427 (436)
|...+.++..++|..-.
T Consensus 869 A~~af~~~qSLdP~nl~ 885 (1238)
T KOG1127|consen 869 AEPAFSSVQSLDPLNLV 885 (1238)
T ss_pred hhHHHHhhhhcCchhhH
Confidence 99999998888887544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.3e-12 Score=113.53 Aligned_cols=173 Identities=18% Similarity=0.157 Sum_probs=155.3
Q ss_pred HHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 186 LAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD 265 (436)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 265 (436)
+-......+ ++... .++...+...|+-+.+..+..++...+|.+...+..+|...+..|++.+|+..+.++..+.|.+
T Consensus 56 l~~~~~~~p-~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d 133 (257)
T COG5010 56 LGAAVLRNP-EDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD 133 (257)
T ss_pred HHHHHhcCc-chHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC
Confidence 333344444 44455 6666777777999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH
Q 013800 266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY 345 (436)
Q Consensus 266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~ 345 (436)
.++|..+|.+|.+.|+ +++|...|.+++++.|+++.+..++| ..+.-.|+++.|..+
T Consensus 134 ~~~~~~lgaaldq~Gr-~~~Ar~ay~qAl~L~~~~p~~~nNlg----------------------ms~~L~gd~~~A~~l 190 (257)
T COG5010 134 WEAWNLLGAALDQLGR-FDEARRAYRQALELAPNEPSIANNLG----------------------MSLLLRGDLEDAETL 190 (257)
T ss_pred hhhhhHHHHHHHHccC-hhHHHHHHHHHHHhccCCchhhhhHH----------------------HHHHHcCCHHHHHHH
Confidence 9999999999999985 99999999999999999999999999 888889999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013800 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~a 384 (436)
+..+....+.+..+..+++.+...+|+ +++|.....+-
T Consensus 191 ll~a~l~~~ad~~v~~NLAl~~~~~g~-~~~A~~i~~~e 228 (257)
T COG5010 191 LLPAYLSPAADSRVRQNLALVVGLQGD-FREAEDIAVQE 228 (257)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhhcCC-hHHHHhhcccc
Confidence 999999999999999999999999999 99998877653
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-11 Score=121.03 Aligned_cols=230 Identities=12% Similarity=0.048 Sum_probs=174.7
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
..+...-..|..+..+|+-++|..+.+.++..++...-+|..+|.++....+|++|+.+|+.|+.+.|+|..+|..++.+
T Consensus 39 eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslL 118 (700)
T KOG1156|consen 39 EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLL 118 (700)
T ss_pred ccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 34455555666666678888888888888888888888888888888888888888888888888888888888888877
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--------------------hHHHH
Q 013800 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------------------LPIQS 335 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------------~~~~~ 335 (436)
...++ +++.....-.+.+++.|.....|..++..+...|++..|..+++++.+. .+..+
T Consensus 119 Q~QmR-d~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E 197 (700)
T KOG1156|consen 119 QIQMR-DYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE 197 (700)
T ss_pred HHHHH-hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 77775 5888888888888888888888888888888888888888888766654 55666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH-HH
Q 013800 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDS-KS 414 (436)
Q Consensus 336 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~ 414 (436)
.|.+++|.+.+..--..--+........|.++.++++ +++|...|...+..+|++...+..+-.++....+--+++ ..
T Consensus 198 ~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~-lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~l 276 (700)
T KOG1156|consen 198 AGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQ-LEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKAL 276 (700)
T ss_pred cccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhh-HHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 7777777766655433333444556667788888888 899999999999999988888877777775333334444 56
Q ss_pred HHHHHhhCCCChh
Q 013800 415 SDQFQQVAPIRQG 427 (436)
Q Consensus 415 ~~~al~l~p~~~~ 427 (436)
|...-+..|.+..
T Consensus 277 y~~ls~~y~r~e~ 289 (700)
T KOG1156|consen 277 YAILSEKYPRHEC 289 (700)
T ss_pred HHHHhhcCccccc
Confidence 6666666555443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-10 Score=109.44 Aligned_cols=240 Identities=17% Similarity=0.103 Sum_probs=170.2
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPC-HPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
+...++-...+.-...+ .-.-++..-+....++|+++.|-.++.++-+..++ ...+...++.++...|+++.|..-..
T Consensus 99 ~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 99 DFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred cHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 44455555555444443 23344555555666677777777777777776443 33566667777777777777777777
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------------------------
Q 013800 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA--------------------------------------- 297 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~--------------------------------------- 297 (436)
++++..|.++.++.....+|...|. |.+...++.+.-+..
T Consensus 178 ~ll~~~pr~~~vlrLa~r~y~~~g~-~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 178 QLLEMTPRHPEVLRLALRAYIRLGA-WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHhCcCChHHHHHHHHHHHHhcc-HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 7777777777777777777777764 777776665543321
Q ss_pred ---CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 298 ---PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV---------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAK 365 (436)
Q Consensus 298 ---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 365 (436)
.+++.....++.-+..+|+.++|.+++.+.+++ .-....++...=++..++.++..|+++..+..||.
T Consensus 257 r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~ 336 (400)
T COG3071 257 RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGR 336 (400)
T ss_pred HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 113444456666666777777777777766666 22334566777777777777888999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 366 LVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 366 ~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
.+++.+. |.+|..+|+.++...|+ ...+..+|.++.++|+..+|.++++.++.+
T Consensus 337 L~~k~~~-w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 337 LALKNKL-WGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHhhH-HHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999 99999999999999987 677899999999999999999999998855
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-12 Score=117.84 Aligned_cols=108 Identities=17% Similarity=0.158 Sum_probs=53.7
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 279 (436)
....-|+-+++.++|++|+..|.+||+++|.++..|.+.|.+|.++|.++.|++.++.++.++|....+|..||.+|+.+
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence 34444444555555555555555555555555555555555555555555555555555555555555555555444444
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 280 HRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
++ +.+|++.|+++|+++|++...+.+|.
T Consensus 163 gk-~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 163 GK-YEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred Cc-HHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 43 55555555555555555444444444
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-10 Score=126.82 Aligned_cols=218 Identities=14% Similarity=0.028 Sum_probs=133.7
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDE--YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA----DPGDGESWMQ 271 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~ 271 (436)
...|..+-..+.+.|++++|+.+|+++.+. .| +...|..+...|.+.|++++|.+.|.+.... .| +...|..
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTyna 584 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGA 584 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHH
Confidence 345666666666667777777777666553 23 4556666666666777777777777666542 22 3455555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHHcC
Q 013800 272 YAKLVWELHRDQHRALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQSKG 337 (436)
Q Consensus 272 la~~~~~~~~d~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~g 337 (436)
+...|.+.++ +++|.+.|+++.+.+ +.+...|..+...+.+.|+.++|..++.+..+. ..+.+.|
T Consensus 585 LI~ay~k~G~-ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G 663 (1060)
T PLN03218 585 LMKACANAGQ-VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHHHCCC-HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 6656666553 777777777766665 345566666666777777777777766655543 4555566
Q ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHH
Q 013800 338 DLEGAEEYFSRAILAN-PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA--SPADSHVLAAYACFLWETEEDEDDSKS 414 (436)
Q Consensus 338 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~ 414 (436)
++++|.++++++.+.. +-+..+|..+..+|.+.|+ +++|++.|++.... .|+ ...|..+...|.+.|+.++|+++
T Consensus 664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~-~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlel 741 (1060)
T PLN03218 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN-WKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEV 741 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 6666666666666543 2235566666666666666 66666666665442 232 45566666666666666666666
Q ss_pred HHHHHh
Q 013800 415 SDQFQQ 420 (436)
Q Consensus 415 ~~~al~ 420 (436)
|++...
T Consensus 742 f~eM~~ 747 (1060)
T PLN03218 742 LSEMKR 747 (1060)
T ss_pred HHHHHH
Confidence 665543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-10 Score=125.64 Aligned_cols=220 Identities=10% Similarity=0.018 Sum_probs=163.5
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP-CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP-GDGESWMQYAKL 275 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 275 (436)
...|..+-..+.+.|++++|.++|+++.+... .+...|..+...|.+.|++++|++.|.+.....- -+...|..+...
T Consensus 472 ~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a 551 (1060)
T PLN03218 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 35666666777778888888888888776542 2567777788888888888888888887766532 246677777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHHcCC
Q 013800 276 VWELHRDQHRALTYFERAALA----APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQSKGD 338 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~g~ 338 (436)
+...+. +++|.+.|++.... .| +...+..+...+.+.|++++|.++++...+. ..|.+.|+
T Consensus 552 ~~k~G~-~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~ 629 (1060)
T PLN03218 552 CGQSGA-VDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD 629 (1060)
T ss_pred HHHCCC-HHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Confidence 777764 88888888887653 23 3566777777888888888888888766654 56777888
Q ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013800 339 LEGAEEYFSRAILA--NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS-PADSHVLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 339 ~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 415 (436)
+++|+..|.+..+. .|+ ..+|..+...+.+.|+ +++|.++++++.+.. +-+...+..+...|.+.|+.++|.++|
T Consensus 630 ~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~-~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf 707 (1060)
T PLN03218 630 WDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGD-LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 88888888887765 344 6678888888888888 888888888887754 234677888888888888888888888
Q ss_pred HHHHhh
Q 013800 416 DQFQQV 421 (436)
Q Consensus 416 ~~al~l 421 (436)
++....
T Consensus 708 ~eM~~~ 713 (1060)
T PLN03218 708 EDIKSI 713 (1060)
T ss_pred HHHHHc
Confidence 887653
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6e-11 Score=105.92 Aligned_cols=189 Identities=16% Similarity=0.076 Sum_probs=163.6
Q ss_pred CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 013800 212 DDSAEAEEYYKRMIDE------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHR 285 (436)
Q Consensus 212 g~~~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~ 285 (436)
.+.++-++++...+.. .|+.-.++-....+....|+.+-|..++++.-...|+...+....|..+...+. +++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~-~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGN-YKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhc-hhh
Confidence 3445556666555543 333345566677777889999999999999999899999999999988877775 999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 286 ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAK 365 (436)
Q Consensus 286 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 365 (436)
|+++|+..++-+|.+...+.... .+...+|+.-+|++.+...++..+.|.++|..++.
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKl----------------------Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae 162 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKL----------------------AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE 162 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHH----------------------HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 99999999999999988887666 66777899999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---hHHHHHHHHHHHhhCCC
Q 013800 366 LVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEE---DEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 366 ~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~l~p~ 424 (436)
+|...|+ |++|.-+|++.+-+.|.++..+..+|.+++-+|. .+-|.++|.+++.++|.
T Consensus 163 iY~~~~~-f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 163 IYLSEGD-FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred HHHhHhH-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence 9999999 9999999999999999999999999999888874 56699999999999994
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-12 Score=118.25 Aligned_cols=93 Identities=22% Similarity=0.176 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 314 (436)
+..-|.-+.+.++|++|+..|.+||+++|.++..|.++|.+|.+++. ++.|++.++.+|.++|....+|..||.++..+
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~-~~~AVkDce~Al~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGE-YEDAVKDCESALSIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcc-hHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence 34445555555555555555555555555555555555555555553 55555555555555555555555555555555
Q ss_pred cCchHHHHHHHHHH
Q 013800 315 EDDGEDDKAQEEHI 328 (436)
Q Consensus 315 g~~~~A~~~~~~~~ 328 (436)
|++.+|++.|++++
T Consensus 163 gk~~~A~~aykKaL 176 (304)
T KOG0553|consen 163 GKYEEAIEAYKKAL 176 (304)
T ss_pred CcHHHHHHHHHhhh
Confidence 55555555555444
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3e-11 Score=129.56 Aligned_cols=231 Identities=15% Similarity=0.025 Sum_probs=154.6
Q ss_pred ChhhhhhHhhhhhhCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 013800 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE--YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD-PGDGESWMQYA 273 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 273 (436)
+..+|..+...+.+.|++++|+.+|+++.+. .| +...+..+..++.+.|++++|.+.+..+++.. +.+..++..+.
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li 367 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence 3456777777777777777777777777653 23 44566667777777777777777777777665 44556666677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHHcCCHH
Q 013800 274 KLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQSKGDLE 340 (436)
Q Consensus 274 ~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~g~~~ 340 (436)
..|.+.|. +++|.+.|++..+ .+...|..+...+...|+.++|.+++++.... ..+.+.|+++
T Consensus 368 ~~y~k~G~-~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~ 443 (697)
T PLN03081 368 DLYSKWGR-MEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443 (697)
T ss_pred HHHHHCCC-HHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHH
Confidence 77776654 7777777776543 35567777777788888888888888776654 4566677777
Q ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013800 341 GAEEYFSRAILANP--GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 341 ~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 418 (436)
+|.++|+...+..+ -+...|..+..++.+.|+ +++|.+.+++. ...|+ ..+|..+...+...|+.+.|...+++.
T Consensus 444 ~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~-~~eA~~~~~~~-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l 520 (697)
T PLN03081 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGL-LDEAYAMIRRA-PFKPT-VNMWAALLTACRIHKNLELGRLAAEKL 520 (697)
T ss_pred HHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC-HHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 77777777765322 124566677777777777 77777776653 22333 456777777777777777777777777
Q ss_pred HhhCCCChhHHh-hhhhc
Q 013800 419 QQVAPIRQGAVT-TANVY 435 (436)
Q Consensus 419 l~l~p~~~~a~~-~an~y 435 (436)
+.+.|.....+. +.|+|
T Consensus 521 ~~~~p~~~~~y~~L~~~y 538 (697)
T PLN03081 521 YGMGPEKLNNYVVLLNLY 538 (697)
T ss_pred hCCCCCCCcchHHHHHHH
Confidence 777776544333 44444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3e-11 Score=120.20 Aligned_cols=222 Identities=14% Similarity=0.097 Sum_probs=185.0
Q ss_pred hhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 013800 205 DLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQH 284 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~ 284 (436)
..-.+..++|...++..+..++..|++.+.+...|..+..+|+-++|......++..++.....|.-+|.++.... +|+
T Consensus 14 ~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK-~Y~ 92 (700)
T KOG1156|consen 14 ALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK-KYD 92 (700)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh-hHH
Confidence 3344566999999999999999999999999999999999999999999999999999999999999998877776 599
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHh
Q 013800 285 RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILA 352 (436)
Q Consensus 285 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~ 352 (436)
+|++||+.|+.+.|+|..+|.-++.+...+++++.......+.++. ..+...|++..|....+.-...
T Consensus 93 eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 93 EAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998888777766655 6677789999999888877665
Q ss_pred C---CC-----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 353 N---PG-----DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 353 ~---p~-----~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
. |. ..+.......++...|. +++|++.+..--..--+........+.++..+++.++|+..|...+..+|+
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~-~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd 251 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGS-LQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD 251 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHccc-HHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch
Confidence 4 32 23455566667777788 788877766543333333345567789999999999999999999999998
Q ss_pred ChhH
Q 013800 425 RQGA 428 (436)
Q Consensus 425 ~~~a 428 (436)
...-
T Consensus 252 n~~Y 255 (700)
T KOG1156|consen 252 NLDY 255 (700)
T ss_pred hHHH
Confidence 6553
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.2e-11 Score=128.38 Aligned_cols=237 Identities=11% Similarity=0.011 Sum_probs=197.1
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEY-PCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
++++|..+|..-....-.-+..+|..+...+.+.|++++|.+++..+++.. +.+..++..+...|.+.|++++|...|+
T Consensus 305 ~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~ 384 (697)
T PLN03081 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384 (697)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH
Confidence 334454444433222211244678888889999999999999999999976 5577888999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----
Q 013800 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ-DSNILAAYACFLWEMEDDGEDDKAQEEHIQV----- 330 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----- 330 (436)
+..+ .+...|..+...|...|. .++|++.|++.++.... +...+..+...+...|..++|.++++...+.
T Consensus 385 ~m~~---~d~~t~n~lI~~y~~~G~-~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p 460 (697)
T PLN03081 385 RMPR---KNLISWNALIAGYGNHGR-GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP 460 (697)
T ss_pred hCCC---CCeeeHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Confidence 8754 466789999999888875 99999999999876432 5666888888999999999999999987753
Q ss_pred ---------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 331 ---------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 331 ---------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
.++.+.|++++|.+.+++. ...| +..+|..+..++...|+ ++.|...+++.+++.|++...|..++.+
T Consensus 461 ~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~-~~~a~~~~~~l~~~~p~~~~~y~~L~~~ 537 (697)
T PLN03081 461 RAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKN-LELGRLAAEKLYGMGPEKLNNYVVLLNL 537 (697)
T ss_pred CccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCC-cHHHHHHHHHHhCCCCCCCcchHHHHHH
Confidence 7888999999999998764 2334 47789999999999999 9999999999999999998899999999
Q ss_pred HHHCCChHHHHHHHHHHHhh
Q 013800 402 LWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 402 ~~~~g~~~~A~~~~~~al~l 421 (436)
|...|++++|.+++++..+.
T Consensus 538 y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 538 YNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999988765
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-11 Score=118.91 Aligned_cols=176 Identities=19% Similarity=0.061 Sum_probs=147.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNIL 304 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~ 304 (436)
+|+.+.++..+|.++...|++++|...+.++....|.+ .+.....+.+++..+ ++++|...++++++.+|++..++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~P~~~~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAG-DLPKALALLEQLLDDYPRDLLAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHH
Confidence 79999999999999999999999999999999887754 556677787777776 59999999999999999999777
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013800 305 AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 305 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~a 384 (436)
.. +..+...+ ...+....+...+......+|....++..+|.++...|+ +++|+..++++
T Consensus 81 ~~-~~~~~~~~------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~-~~~A~~~~~~a 140 (355)
T cd05804 81 KL-HLGAFGLG------------------DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ-YDRAEEAARRA 140 (355)
T ss_pred HH-hHHHHHhc------------------ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence 65 42222222 123444555555555445677888888899999999999 99999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 385 VQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 385 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
++++|++..++..++.++...|++++|+..+.+++...|.
T Consensus 141 l~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 141 LELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 9999999999999999999999999999999999998764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.1e-12 Score=127.80 Aligned_cols=197 Identities=15% Similarity=0.130 Sum_probs=161.1
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
..|-..-.+|...|+..+|..+..+-++ .|.++..|..+|.+....--|++|.++.+.. +..+.+.+|...+.
T Consensus 425 emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~ 497 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILS 497 (777)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhcccccc
Confidence 4555556677777777777777777777 5556667777776666655555555555433 23355555555455
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
.+ +|.++.++++..++++|-....|+.+| .+..+.++++.|.++|.+++.++|++.+
T Consensus 498 ~~-~fs~~~~hle~sl~~nplq~~~wf~~G----------------------~~ALqlek~q~av~aF~rcvtL~Pd~~e 554 (777)
T KOG1128|consen 498 NK-DFSEADKHLERSLEINPLQLGTWFGLG----------------------CAALQLEKEQAAVKAFHRCVTLEPDNAE 554 (777)
T ss_pred ch-hHHHHHHHHHHHhhcCccchhHHHhcc----------------------HHHHHHhhhHHHHHHHHHHhhcCCCchh
Confidence 44 599999999999999999999999999 8888899999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013800 359 IMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 426 (436)
+|++++.+|...++ -.+|...+++|++.+-++..+|-|+..+..+.|.+++|++.|.+.+.++-++.
T Consensus 555 aWnNls~ayi~~~~-k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 555 AWNNLSTAYIRLKK-KKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred hhhhhhHHHHHHhh-hHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999 99999999999999988899999999999999999999999999998865544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.2e-11 Score=114.99 Aligned_cols=153 Identities=19% Similarity=0.098 Sum_probs=140.6
Q ss_pred ChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLV 276 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 276 (436)
...++++.+..++..|++++|+..++..+...|+|+..+...+.++...++..+|++.+++++.++|..+..++++|.+|
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~al 384 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQAL 384 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 277 WELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 277 ~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
...++ +.+|+..++..+..+|+++..|..|+..+..+|+..++..... ..+...|++++|+..+.++.+...-
T Consensus 385 l~~g~-~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----E~~~~~G~~~~A~~~l~~A~~~~~~ 457 (484)
T COG4783 385 LKGGK-PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----EGYALAGRLEQAIIFLMRASQQVKL 457 (484)
T ss_pred HhcCC-hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----HHHHhCCCHHHHHHHHHHHHHhccC
Confidence 99986 9999999999999999999999999999999998888887776 5566788888888888888877643
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.5e-11 Score=123.62 Aligned_cols=219 Identities=16% Similarity=0.001 Sum_probs=182.1
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCC--------------------CCHHHHHHHHHHH-----HHcCCHHHHHHHH
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYP--------------------CHPLLLRNYAQLL-----QKKGDLYRAEDYY 255 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P--------------------~~~~~~~~la~~~-----~~~g~~~~A~~~~ 255 (436)
.++.|.+......|.+|...+.....+.- +-....+..+..+ ...++...|...|
T Consensus 402 ~~akgl~~ie~~~y~Daa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~al 481 (1238)
T KOG1127|consen 402 QRAKGLAPIEANVYTDAAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHAL 481 (1238)
T ss_pred hhhcchhHHHHhhchHHHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 55666666666777777666665555441 1111111112111 1234578899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----
Q 013800 256 NHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----- 330 (436)
Q Consensus 256 ~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----- 330 (436)
-+++.+++..+.+|..+|.+|.... |...|.++|++|.++|+.+..++...+..+....+.+.|....-..-++
T Consensus 482 i~alrld~~~apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~ 560 (1238)
T KOG1127|consen 482 IRALRLDVSLAPAFAFLGQIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFA 560 (1238)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHH
Confidence 9999999999999999999999887 6999999999999999999999999999999999999998886533333
Q ss_pred ---------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 331 ---------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 331 ---------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
..|...+++.+|+..|+.+++.+|.+...|..+|.+|...|+ +..|++.|.+|..++|.+..+.+..+..
T Consensus 561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr-y~~AlKvF~kAs~LrP~s~y~~fk~A~~ 639 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR-YSHALKVFTKASLLRPLSKYGRFKEAVM 639 (1238)
T ss_pred HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc-eehHHHhhhhhHhcCcHhHHHHHHHHHH
Confidence 667788999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHCCChHHHHHHHHHHHhh
Q 013800 402 LWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 402 ~~~~g~~~~A~~~~~~al~l 421 (436)
...+|+|.+|+..+...+..
T Consensus 640 ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 640 ECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred HHHhhhHHHHHHHHHHHHHH
Confidence 99999999999999887764
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=103.83 Aligned_cols=118 Identities=15% Similarity=0.067 Sum_probs=105.2
Q ss_pred HHHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013800 292 RAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL 370 (436)
Q Consensus 292 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (436)
-+..+. ++.-+..+.+| ..++..|++++|+..|+-+..++|.+...|++||.++..+
T Consensus 25 ~l~~~~~~~~l~~lY~~A----------------------~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~ 82 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYA----------------------MQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQ 82 (157)
T ss_pred HHHCCChHHHHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 344556 66777888888 8888999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCChhHHhhh
Q 013800 371 HHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA---PIRQGAVTTA 432 (436)
Q Consensus 371 g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~---p~~~~a~~~a 432 (436)
|+ +.+|+..|.+++.++|+++..++++|.+++..|+.+.|.+.|+.++..- |.+......|
T Consensus 83 g~-~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A 146 (157)
T PRK15363 83 KH-WGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRA 146 (157)
T ss_pred hh-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHH
Confidence 99 9999999999999999999999999999999999999999999999885 5554444433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-10 Score=116.35 Aligned_cols=220 Identities=19% Similarity=0.158 Sum_probs=141.3
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH 280 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 280 (436)
......++...|++++|+++++.....-.+...++-..|.++..+|++++|...|...+..+|++...+..+..++....
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhc
Confidence 33445567777999999999988888888888888889999999999999999999999999999888888887763322
Q ss_pred ----CCHHHHHHHHHHHHHhCCCCHHHH--------------------------------HHHHHHHHHccCchHHHHHH
Q 013800 281 ----RDQHRALTYFERAALAAPQDSNIL--------------------------------AAYACFLWEMEDDGEDDKAQ 324 (436)
Q Consensus 281 ----~d~~~A~~~~~~al~~~p~~~~~~--------------------------------~~la~~~~~~g~~~~A~~~~ 324 (436)
.+.+.-..+|++.....|...... .++-.++....+..-...++
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 135666777777766666422211 11111111111111111111
Q ss_pred HHHHHH-----------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHH
Q 013800 325 EEHIQV-----------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHD 375 (436)
Q Consensus 325 ~~~~~~-----------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~ 375 (436)
..+... ..|...|++++|++++++||+..|..++.+...|.++...|+ +.
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~-~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD-LK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC-HH
Confidence 111100 344456677777777777777777777777777777777766 77
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 376 KALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 376 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
+|.+.++.|-.+++.+-.+-...+..+++.|+.++|.+.......-
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 7777777777777666666666666666777777766666555443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-10 Score=115.33 Aligned_cols=207 Identities=15% Similarity=0.061 Sum_probs=150.7
Q ss_pred HHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 183 PMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE-YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
..-+..+..+++ .++.+.+.++.-+...++.+.|..+.+++++. ..+++.+|..+|.++...+++.+|+.....+++-
T Consensus 464 lqale~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 464 LQALEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 344566666666 56666666666666667777777777777776 3345566777777777777777666666666555
Q ss_pred CCCC----------------------------------------------------------------------------
Q 013800 262 DPGD---------------------------------------------------------------------------- 265 (436)
Q Consensus 262 ~p~~---------------------------------------------------------------------------- 265 (436)
.|+|
T Consensus 543 ~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~ 622 (799)
T KOG4162|consen 543 FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS 622 (799)
T ss_pred hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh
Confidence 4441
Q ss_pred ---------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCch
Q 013800 266 ---------------------------GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDG 318 (436)
Q Consensus 266 ---------------------------~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 318 (436)
...|...+..+...+ +.++|..|+.++-.++|..+..|+..|.++...|...
T Consensus 623 ~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~-~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 623 QLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSG-NDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred hhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhH
Confidence 123334444433333 3667777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHH------------hHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013800 319 EDDKAQEEHIQV------------LPIQSKGDLEGAEE--YFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 319 ~A~~~~~~~~~~------------~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~a 384 (436)
+|...+..++.. .++.+.|+..-|.. .+..+++++|.++++|+.+|.++..+|+ .++|.++|+.+
T Consensus 702 EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd-~~~Aaecf~aa 780 (799)
T KOG4162|consen 702 EAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD-SKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc-hHHHHHHHHHH
Confidence 777777765554 78888898888887 9999999999999999999999999999 99999999999
Q ss_pred HHhCCCCH
Q 013800 385 VQASPADS 392 (436)
Q Consensus 385 l~~~p~~~ 392 (436)
+++.+.+|
T Consensus 781 ~qLe~S~P 788 (799)
T KOG4162|consen 781 LQLEESNP 788 (799)
T ss_pred HhhccCCC
Confidence 99998776
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=98.37 Aligned_cols=102 Identities=15% Similarity=0.039 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
++..+..+.+|..++..|++++|+..|+-++.++|.+...|++||.++..+++ |.+|+.+|.+++.++|+++..++++|
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~-~~~AI~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKH-WGEAIYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 44445555555555566666666555555555555555555555555555543 55555555555555555555555555
Q ss_pred HHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC
Q 013800 309 CFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN 353 (436)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 353 (436)
.++...|+.+.|.+.|+.++...
T Consensus 111 ----------------------~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 111 ----------------------ECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ----------------------HHHHHcCCHHHHHHHHHHHHHHh
Confidence 44455555555555555555443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=116.63 Aligned_cols=240 Identities=9% Similarity=0.028 Sum_probs=180.8
Q ss_pred hHHHHHhhcCCCCCCC---hhhhhhHhhhhhhCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHH
Q 013800 182 PPMYLAMGLGISVPGF---DDAGEVVDLIMPNFDDSAEAEEYYKRMIDE------YPCHPLLLRNYAQLLQKKGDLYRAE 252 (436)
Q Consensus 182 a~~~~~~~~~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g~~~~A~ 252 (436)
-..++..++.+.-.+. ...|..+|+.|..+++|++|+++-..-+-+ .-..+..--++|+++..+|.|++|+
T Consensus 36 Gv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~ 115 (639)
T KOG1130|consen 36 GVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEAL 115 (639)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHH
Confidence 3456777776655322 256888999999999999999875543322 2233455678999999999999999
Q ss_pred HHHHHHHHhCCC------CHHHHHHHHHHHHHHcC-------------------CHHHHHHHHHHHHHhCCC------CH
Q 013800 253 DYYNHATMADPG------DGESWMQYAKLVWELHR-------------------DQHRALTYFERAALAAPQ------DS 301 (436)
Q Consensus 253 ~~~~~al~~~p~------~~~~~~~la~~~~~~~~-------------------d~~~A~~~~~~al~~~p~------~~ 301 (436)
.+..+-+.+..+ ...+++++|.+|...|+ .++.|.++|+.-+++... ..
T Consensus 116 ~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqG 195 (639)
T KOG1130|consen 116 TCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQG 195 (639)
T ss_pred HHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhc
Confidence 998887765332 46789999999987664 124556666665555432 23
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhC------CCCH
Q 013800 302 NILAAYACFLWEMEDDGEDDKAQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILAN------PGDG 357 (436)
Q Consensus 302 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~------p~~~ 357 (436)
.++-+||+.++-+|+++.|+..-+.-+.. .++.-.|+++.|+++|++++.+. ...+
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45568889999999999998877654443 77888899999999999987653 2346
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASP------ADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
+..+.||..|.-..+ +++|+.++.+-+.+.. ....+++.||.++-.+|..++|+.+.++.+++.
T Consensus 276 QscYSLgNtytll~e-~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKE-VQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 778999999999988 9999999999877643 234789999999999999999999998888765
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.7e-11 Score=116.08 Aligned_cols=113 Identities=24% Similarity=0.145 Sum_probs=106.0
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH 280 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 280 (436)
+...|..++..|+|++|+.+|+++++++|+++.+++++|.++...|++++|+..+++++.++|.++.+++.+|.+++.++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45567888889999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013800 281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 314 (436)
+ |++|+..|+++++++|++..+...++.+...+
T Consensus 85 ~-~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 E-YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred C-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5 99999999999999999999999888776555
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.7e-11 Score=114.94 Aligned_cols=113 Identities=17% Similarity=0.152 Sum_probs=85.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 314 (436)
+...|..++..|++++|+.+|.++++++|.++.++..+|.++..+++ +++|+..+++++.++|+++.+++.+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~-~~eAl~~~~~Al~l~P~~~~a~~~lg------ 77 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGN-FTEAVADANKAIELDPSLAKAYLRKG------ 77 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCCHHHHHHHH------
Confidence 45567777777778888888888877777777777777777777764 77777777777777777777777777
Q ss_pred cCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013800 315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL 370 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (436)
.++..+|++++|+..|+++++++|++..+...++.+...+
T Consensus 78 ----------------~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 78 ----------------TACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred ----------------HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 6777777777777777777777777777777776665554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-09 Score=105.48 Aligned_cols=254 Identities=18% Similarity=0.161 Sum_probs=200.1
Q ss_pred CCCChHHHHHhhcCCCCCCCh-hhhhhHhhhhhhCCCH---HHHH-----HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 013800 178 RPVSPPMYLAMGLGISVPGFD-DAGEVVDLIMPNFDDS---AEAE-----EYYKRMIDEYPCHPLLLRNYAQLLQKKGDL 248 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~-~~~~~lg~~~~~~g~~---~~A~-----~~~~~al~~~P~~~~~~~~la~~~~~~g~~ 248 (436)
+.+.+...|..|+..-|.+.+ ..+.+.-..--+.|+. ++++ -.|++.+..+|-+.+.|+.+-.+....|+.
T Consensus 259 E~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~ 338 (677)
T KOG1915|consen 259 EYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDK 338 (677)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCH
Confidence 444556667777777774333 2222222222233442 3333 347888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcc
Q 013800 249 YRAEDYYNHATMADPGDG---------ESWMQYAKLVWELHRDQHRALTYFERAALAAPQ----DSNILAAYACFLWEME 315 (436)
Q Consensus 249 ~~A~~~~~~al~~~p~~~---------~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g 315 (436)
+.-.+.|++|+...|... ..|.+++..-.-.-.|.+.+.+.|+.+|++-|. .+.+|..++.+...+.
T Consensus 339 ~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~ 418 (677)
T KOG1915|consen 339 DRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQL 418 (677)
T ss_pred HHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHc
Confidence 999999999999887642 345555532222234689999999999999997 5788999999999999
Q ss_pred CchHHHHHHHHHHHH-----------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013800 316 DDGEDDKAQEEHIQV-----------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 316 ~~~~A~~~~~~~~~~-----------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~a 384 (436)
+...|.+++..++-. .+-.++++++.+..+|++-|+..|.+..+|...|.+-..+|+ .+.|...|+-|
T Consensus 419 ~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgd-tdRaRaifelA 497 (677)
T KOG1915|consen 419 NLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGD-TDRARAIFELA 497 (677)
T ss_pred ccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhh-HHHHHHHHHHH
Confidence 999999999877655 667788999999999999999999999999999999999999 99999999999
Q ss_pred HHhCCCC-H-HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHhhh
Q 013800 385 VQASPAD-S-HVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVTTA 432 (436)
Q Consensus 385 l~~~p~~-~-~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~a 432 (436)
+....-+ + ..|..+..+-...|.++.|..+|++.|+..++...+..-|
T Consensus 498 i~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA 547 (677)
T KOG1915|consen 498 ISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFA 547 (677)
T ss_pred hcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHH
Confidence 8754322 2 4567778889999999999999999999998877665543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7e-10 Score=121.81 Aligned_cols=227 Identities=10% Similarity=0.050 Sum_probs=154.1
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--------
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWM-------- 270 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-------- 270 (436)
..+..+-..|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|+..|++.+...+-+...+.
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACAR 501 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhh
Confidence 4667777888888888888888887643 34567777788888888888888888887653222222111
Q ss_pred ---------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHH
Q 013800 271 ---------------------------QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKA 323 (436)
Q Consensus 271 ---------------------------~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 323 (436)
.+-..|.+.| ++++|...|+.. +.+...|..+...+...|+.++|.++
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G-~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG-RMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC-CHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 2224444554 377777777664 55677777788888888888888888
Q ss_pred HHHHHHH-------------hHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013800 324 QEEHIQV-------------LPIQSKGDLEGAEEYFSRAILANP--GDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 324 ~~~~~~~-------------~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~ 388 (436)
+++.... ..+.+.|++++|..+|+...+..+ -+...|..+..++.+.|+ +++|.+.+++. ...
T Consensus 577 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~-~~eA~~~~~~m-~~~ 654 (857)
T PLN03077 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK-LTEAYNFINKM-PIT 654 (857)
T ss_pred HHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC-HHHHHHHHHHC-CCC
Confidence 8776654 556677788888888877764322 125677777777777777 77777777764 244
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhhcC
Q 013800 389 PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANVYA 436 (436)
Q Consensus 389 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~-~an~ya 436 (436)
|+ ..+|..+...+...|+.+.+....++++++.|+...... ++|+|+
T Consensus 655 pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 655 PD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 54 556666666666677777777777777777777666555 556653
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-09 Score=110.58 Aligned_cols=242 Identities=15% Similarity=0.045 Sum_probs=164.3
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG-----DLYRAE 252 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g-----~~~~A~ 252 (436)
+++.|..++......-. +.....-..|.++.++|++++|...|+..|+.+|++...+..+..+..... +.+.-.
T Consensus 19 ~~~~AL~~L~~~~~~I~-Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~ 97 (517)
T PF12569_consen 19 DYEEALEHLEKNEKQIL-DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLL 97 (517)
T ss_pred CHHHHHHHHHhhhhhCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHH
Confidence 44466777766554444 455667788999999999999999999999999999999999998884332 456667
Q ss_pred HHHHHHHHhCCCC--------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C
Q 013800 253 DYYNHATMADPGD--------------------------------GESWMQYAKLVWELHRDQHRALTYFERAALA---A 297 (436)
Q Consensus 253 ~~~~~al~~~p~~--------------------------------~~~~~~la~~~~~~~~d~~~A~~~~~~al~~---~ 297 (436)
+.|+......|.. |..+..+-.+|....+ ..-...++...+.. .
T Consensus 98 ~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K-~~~i~~l~~~~~~~l~~~ 176 (517)
T PF12569_consen 98 ELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEK-AAIIESLVEEYVNSLESN 176 (517)
T ss_pred HHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhH-HHHHHHHHHHHHHhhccc
Confidence 7777776666543 1111111111110000 00111111111110 0
Q ss_pred ------------CCCH--HHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHH
Q 013800 298 ------------PQDS--NILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 298 ------------p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~ 351 (436)
|... -+++.+++.+...|++++|+..++++|.. .++...|++.+|.+.++.|-.
T Consensus 177 ~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~ 256 (517)
T PF12569_consen 177 GSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE 256 (517)
T ss_pred CCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1111 12355666666677777777776666655 899999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCC-------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 352 ANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS--PAD-------SHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 352 ~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~--p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
+++.|-.+-...+..+.+.|+ .++|.+.+..-...+ |.. .+.....|.+|.+.|++..|++.|..+....
T Consensus 257 LD~~DRyiNsK~aKy~LRa~~-~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 257 LDLADRYINSKCAKYLLRAGR-IEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred CChhhHHHHHHHHHHHHHCCC-HHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999998888888999999999 999999988765443 211 1333556889999999999999998887754
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.1e-10 Score=119.45 Aligned_cols=177 Identities=12% Similarity=0.009 Sum_probs=147.4
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----
Q 013800 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS----- 301 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~----- 301 (436)
..|.+..+|..+...+...+++++|++.++.+++..|+...+++.+|.+++..+. +.++... .++..-+.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~-~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRP-LNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcc-hhhhhhh--hhhhhcccccchhHH
Confidence 4688999999999999999999999999999999999999999999998877765 7666655 6665555444
Q ss_pred --------------HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 302 --------------NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLV 367 (436)
Q Consensus 302 --------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 367 (436)
.+++.+| .+|.++|++++|...|+++++.+|+++.+++++|..|
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA----------------------~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLA----------------------EAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY 160 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHH----------------------HHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 6666666 8899999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHh--------------------CCCCHHH--------HHHHH------------HHHHHCCC
Q 013800 368 WELHHDHDKALCYFERAVQA--------------------SPADSHV--------LAAYA------------CFLWETEE 407 (436)
Q Consensus 368 ~~~g~d~~~A~~~~~~al~~--------------------~p~~~~~--------~~~la------------~~~~~~g~ 407 (436)
... + .++|+.++.+|+.. +|++.+. ...++ ..|...++
T Consensus 161 ae~-d-L~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~ 238 (906)
T PRK14720 161 EEE-D-KEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALED 238 (906)
T ss_pred HHh-h-HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhh
Confidence 999 6 99999999998764 3444322 12222 55777889
Q ss_pred hHHHHHHHHHHHhhCCCChhHHh
Q 013800 408 DEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 408 ~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
+++++.+++.+++..|....+..
T Consensus 239 ~~~~i~iLK~iL~~~~~n~~a~~ 261 (906)
T PRK14720 239 WDEVIYILKKILEHDNKNNKARE 261 (906)
T ss_pred hhHHHHHHHHHHhcCCcchhhHH
Confidence 99999999999999988766554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=9e-10 Score=108.80 Aligned_cols=214 Identities=14% Similarity=0.079 Sum_probs=161.1
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
.+...|+|++|+....+.+...|++..++...-.++.+.++|++|+...++-....-.+ ...+..|.|.+.++. .++|
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk-~Dea 98 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNK-LDEA 98 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHccc-HHHH
Confidence 44556999999999999999999999999999999999999999995544433222222 222788999999986 9999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----hHHHHcCCHHHHHHH---HHHHHHhCCC-CH
Q 013800 287 LTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-----LPIQSKGDLEGAEEY---FSRAILANPG-DG 357 (436)
Q Consensus 287 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~g~~~~A~~~---~~~al~~~p~-~~ 357 (436)
+.+++ -+++.+..++...++++++++++++|.+.|+...+. ....+.+-...+-.. ..+.+...|. ..
T Consensus 99 lk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 99 LKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSY 175 (652)
T ss_pred HHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchH
Confidence 99999 567777888899999999999999999999876554 111111111111111 2333333444 57
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCC--------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 358 EIMSQYAKLVWELHHDHDKALCYFERAVQAS-------PAD--------SHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~~~~al~~~-------p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
+.++|.|.++...|+ |.+|++.+++++.+. ..+ ..+...++.++..+|+.++|...|...+..+
T Consensus 176 el~yN~Ac~~i~~gk-y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 176 ELLYNTACILIENGK-YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 899999999999999 999999999995431 111 1466889999999999999999999999887
Q ss_pred CCCh
Q 013800 423 PIRQ 426 (436)
Q Consensus 423 p~~~ 426 (436)
|.-.
T Consensus 255 ~~D~ 258 (652)
T KOG2376|consen 255 PADE 258 (652)
T ss_pred CCCc
Confidence 5543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.1e-11 Score=112.73 Aligned_cols=217 Identities=12% Similarity=0.033 Sum_probs=168.2
Q ss_pred hhhhhhCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHH
Q 013800 205 DLIMPNFDDSAEAEEYYKRMIDEYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMA------DPGDGESWMQYAK 274 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~ 274 (436)
|.-+++.|+....+..|+.+++...++. .+|..+|++|+.+++|++|+++-..-+.+ .-..+..--++|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4567889999999999999999887764 57889999999999999999986654433 2234556678999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCc-------------hH-------HHHHHHHHH
Q 013800 275 LVWELHRDQHRALTYFERAALAAPQ------DSNILAAYACFLWEMEDD-------------GE-------DDKAQEEHI 328 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~-------------~~-------A~~~~~~~~ 328 (436)
++-.+|. |++|+.++.+-+.+... ...+++++|.+|...|+- ++ |.+.|.+-+
T Consensus 104 tlKv~G~-fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 104 TLKVKGA-FDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred hhhhhcc-cchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 9877775 99999999998876532 567899999999988752 12 222332222
Q ss_pred HH------------------hHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013800 329 QV------------------LPIQSKGDLEGAEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 329 ~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~~A~~~~~~a 384 (436)
+. ..|+-+|+|++|+..-+.-+++.... -.++.++|.++..+|+ ++.|+++|+++
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~-fe~A~ehYK~t 261 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN-FELAIEHYKLT 261 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc-cHhHHHHHHHH
Confidence 21 67778899999999988888775432 3578999999999999 99999999997
Q ss_pred HHhC----CCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013800 385 VQAS----PAD--SHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 385 l~~~----p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 423 (436)
+.+. ... ....+.||..|.-..++++|+.++.+-+.+..
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6543 222 35678899999999999999999988777643
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.7e-10 Score=102.14 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHH
Q 013800 214 SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR--DQHRALTYFE 291 (436)
Q Consensus 214 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--d~~~A~~~~~ 291 (436)
.+..+.-++.-+..+|++++-|..||.+|+.+|+++.|...|.+++++.|++++++..+|.+++...+ +..++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 45555556666666666666666666666666666666666666666666666666666666555432 2344555555
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 292 RAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 292 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
+++.++|.+..++..|| ..++..|+|.+|+..++..++..|.
T Consensus 218 ~al~~D~~~iral~lLA----------------------~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 218 QALALDPANIRALSLLA----------------------FAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHhcCCccHHHHHHHH----------------------HHHHHcccHHHHHHHHHHHHhcCCC
Confidence 55555555555555555 4455555555555555555555443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.3e-10 Score=111.48 Aligned_cols=181 Identities=13% Similarity=0.132 Sum_probs=151.5
Q ss_pred hhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013800 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 281 (436)
..++.++...|-...|+..|++. ..|-....||...|+..+|.....+-++ .|.++..|..+|.+...
T Consensus 402 ~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d--- 469 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHD--- 469 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccC---
Confidence 45677888888888888888764 5667788888888888889888888888 77778877777766433
Q ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 282 DQHRALTYFERAALAAPQ-DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIM 360 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (436)
-.+|++++++..+ +..+...+| ......++|+++.++++..++++|-....|
T Consensus 470 -----~s~yEkawElsn~~sarA~r~~~----------------------~~~~~~~~fs~~~~hle~sl~~nplq~~~w 522 (777)
T KOG1128|consen 470 -----PSLYEKAWELSNYISARAQRSLA----------------------LLILSNKDFSEADKHLERSLEINPLQLGTW 522 (777)
T ss_pred -----hHHHHHHHHHhhhhhHHHHHhhc----------------------cccccchhHHHHHHHHHHHhhcCccchhHH
Confidence 3455555555432 344555555 556668999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 361 SQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 361 ~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
+.+|.+..++++ ++.|.++|..++.++|++.++|.+++.+|..+++..+|...+++++.-+
T Consensus 523 f~~G~~ALqlek-~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 523 FGLGCAALQLEK-EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HhccHHHHHHhh-hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 999999999999 9999999999999999999999999999999999999999999999875
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-09 Score=95.17 Aligned_cols=129 Identities=18% Similarity=0.165 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHHH
Q 013800 212 DDSAEAEEYYKRMIDEYPCH--PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG---DGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~d~~~A 286 (436)
..+..+...+...++.++.+ ..+++.+|.++...|++++|+..|++++.+.|+ .+.++.++|.++...+. +++|
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~-~~eA 91 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE-HTKA 91 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC-HHHH
Confidence 33555566665555555544 467788899999999999999999999888765 34588899988888875 9999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH-------HHHHHHHHHHHhCCCC
Q 013800 287 LTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE-------GAEEYFSRAILANPGD 356 (436)
Q Consensus 287 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~-------~A~~~~~~al~~~p~~ 356 (436)
+.+|++++.++|.....+.+++.++...| ..+...|+++ +|+.+|++++..+|.+
T Consensus 92 ~~~~~~Al~~~~~~~~~~~~la~i~~~~~---------------~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 92 LEYYFQALERNPFLPQALNNMAVICHYRG---------------EQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhh---------------HHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999999999888888887776655 4444566655 4444444555555543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=9e-09 Score=113.11 Aligned_cols=231 Identities=10% Similarity=0.023 Sum_probs=186.6
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHh-CCCCHHHH---------------------
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE-YPCHPLLL--------------------- 235 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~P~~~~~~--------------------- 235 (436)
+.+.|...+..-. . .+...|..+...+.+.|++++|+.+|++++.. .|+.....
T Consensus 439 ~~~~A~~vf~~m~---~-~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 439 CIDKALEVFHNIP---E-KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred CHHHHHHHHHhCC---C-CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 4556666666432 2 34568999999999999999999999999864 34332211
Q ss_pred -------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Q 013800 236 -------------RNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA--PQD 300 (436)
Q Consensus 236 -------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~--p~~ 300 (436)
..+...|.+.|++++|...|+.. +.+...|..+...|...|. .++|+.+|++..+.. |+
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~-~~~A~~lf~~M~~~g~~Pd- 588 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGK-GSMAVELFNRMVESGVNPD- 588 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCC-
Confidence 22336778889999999998875 6688899999999888875 999999999998754 44
Q ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHHH--------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 301 SNILAAYACFLWEMEDDGEDDKAQEEHIQV--------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL 366 (436)
Q Consensus 301 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (436)
...+..+...+...|..++|.++++..... .++.+.|++++|.+.+++. .+.|+ ..+|..|-.+
T Consensus 589 ~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~a 666 (857)
T PLN03077 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNA 666 (857)
T ss_pred cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHH
Confidence 445666667889999999999999988743 7888999999999999885 35565 7788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 367 VWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 367 ~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
+...++ .+.|....++++++.|++...+..++.+|...|++++|.+..+...+.
T Consensus 667 c~~~~~-~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 667 CRIHRH-VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHcCC-hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 877777 999999999999999999999999999999999999999998887664
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-08 Score=93.84 Aligned_cols=105 Identities=14% Similarity=0.074 Sum_probs=85.4
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLL---LRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQ 271 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 271 (436)
+..+...|......|++++|+..|++++...|....+ .+.+|.++++.+++++|+..+++.++..|++ +.+++.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 3445566777777899999999999999999988744 5899999999999999999999999998876 567888
Q ss_pred HHHHHHHHc--------------CC---HHHHHHHHHHHHHhCCCCHH
Q 013800 272 YAKLVWELH--------------RD---QHRALTYFERAALAAPQDSN 302 (436)
Q Consensus 272 la~~~~~~~--------------~d---~~~A~~~~~~al~~~p~~~~ 302 (436)
+|.++...+ +| ..+|+..|++.++..|+...
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y 159 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY 159 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh
Confidence 887754332 11 24688999999999998654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.14 E-value=8e-09 Score=93.34 Aligned_cols=168 Identities=18% Similarity=0.159 Sum_probs=109.4
Q ss_pred ChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 013800 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWM 270 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 270 (436)
.+..+...|...+..|++.+|+..|++.+...|... .+.+.+|.+++..|++++|+..+++.+...|.+ +.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 345677888899999999999999999999988754 789999999999999999999999999999886 46888
Q ss_pred HHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHccCchHHHHHHHHHHHHhHHHHcC
Q 013800 271 QYAKLVWELHRD----------QHRALTYFERAALAAPQDSNILA---AYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG 337 (436)
Q Consensus 271 ~la~~~~~~~~d----------~~~A~~~~~~al~~~p~~~~~~~---~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g 337 (436)
.+|.+++....+ ..+|+..|+..++..|+...+-. .+..+-..+... +..-...|.+.|
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~--------e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH--------ELYIARFYYKRG 155 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH--------HHHHHHHHHCTT
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHcc
Confidence 899887765321 35899999999999998654322 111110000000 000004555556
Q ss_pred CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcC
Q 013800 338 DLEGAEEYFSRAILANPGDG---EIMSQYAKLVWELHH 372 (436)
Q Consensus 338 ~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~ 372 (436)
.|..|+..++.+++..|+.. +++..++.++..+|.
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGL 193 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCC
Confidence 66666666666665555542 345555555555555
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-09 Score=88.19 Aligned_cols=106 Identities=15% Similarity=0.169 Sum_probs=96.5
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH---PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQY 272 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 272 (436)
..++.+|..+...|++++|+..|++++..+|++ ..+++.+|.++...|++++|+.+|++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 467888999999999999999999999999876 5789999999999999999999999999998885 6789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013800 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILA 305 (436)
Q Consensus 273 a~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~ 305 (436)
|.++...++ +++|+.+++++++..|++..+..
T Consensus 83 ~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 83 GMSLQELGD-KEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHhCC-hHHHHHHHHHHHHHCcCChhHHH
Confidence 999999875 99999999999999999876554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5e-09 Score=102.39 Aligned_cols=161 Identities=14% Similarity=0.135 Sum_probs=131.7
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCH
Q 013800 236 RNYAQLLQKKGD---LYRAEDYYNHAT---MADPGDGESWMQYAKLVWEL--------HRDQHRALTYFERAALAAPQDS 301 (436)
Q Consensus 236 ~~la~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~--------~~d~~~A~~~~~~al~~~p~~~ 301 (436)
+..|......+. .+.|+.+|.+++ +++|+.+.++..++.+++.. ..+..+|.+..++|++++|.|+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 666666655544 467889999999 99999999999999988765 1234688999999999999999
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 013800 302 NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYF 381 (436)
Q Consensus 302 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~ 381 (436)
.++..+| .++...++++.|+..|++|+.++|+.+.+|+..|.+....|+ .++|++.+
T Consensus 339 ~a~~~~g----------------------~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~-~~~a~~~i 395 (458)
T PRK11906 339 KILAIMG----------------------LITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK-IEEARICI 395 (458)
T ss_pred HHHHHHH----------------------HHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 9999999 666677889999999999999999999999999999999999 99999999
Q ss_pred HHHHHhCCCCHHHHHHHHHH-HHHCCChHHHHHHHHHHH
Q 013800 382 ERAVQASPADSHVLAAYACF-LWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 382 ~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al 419 (436)
+++++++|.-..+-...-++ .+-....++|+..|-+-.
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKET 434 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhcc
Confidence 99999999866554444444 445566778888775543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.3e-09 Score=91.48 Aligned_cols=196 Identities=10% Similarity=0.005 Sum_probs=134.4
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
.|..++.+|.-++.. |-+.-|.-.|.+++.+.|+.+.++..+|..+...|+++.|.+.|...++
T Consensus 64 RA~l~fERGvlYDSl----------------GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E 127 (297)
T COG4785 64 RAQLLFERGVLYDSL----------------GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 127 (297)
T ss_pred HHHHHHHhcchhhhh----------------hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc
Confidence 345566666665554 8889999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013800 261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
++|....+..+.|..++.-|+ |.-|...+.+-.+.+|+++.--..+- +-...-+..
T Consensus 128 LDp~y~Ya~lNRgi~~YY~gR-~~LAq~d~~~fYQ~D~~DPfR~LWLY-----------------------l~E~k~dP~ 183 (297)
T COG4785 128 LDPTYNYAHLNRGIALYYGGR-YKLAQDDLLAFYQDDPNDPFRSLWLY-----------------------LNEQKLDPK 183 (297)
T ss_pred cCCcchHHHhccceeeeecCc-hHhhHHHHHHHHhcCCCChHHHHHHH-----------------------HHHhhCCHH
Confidence 999999999999988888776 99999999999999999986433222 112233455
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHCCChHHHHH
Q 013800 341 GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-------HVLAAYACFLWETEEDEDDSK 413 (436)
Q Consensus 341 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~ 413 (436)
+|...+.+--+...+.-..|+.... .+|+ .. -...++++.+-..++. +.++.+|+.+...|+.++|..
T Consensus 184 ~A~tnL~qR~~~~d~e~WG~~iV~~---yLgk-iS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~ 258 (297)
T COG4785 184 QAKTNLKQRAEKSDKEQWGWNIVEF---YLGK-IS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATA 258 (297)
T ss_pred HHHHHHHHHHHhccHhhhhHHHHHH---HHhh-cc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 5554433322222222233333222 2222 11 1223333333333222 556677777777777777777
Q ss_pred HHHHHHhh
Q 013800 414 SSDQFQQV 421 (436)
Q Consensus 414 ~~~~al~l 421 (436)
.|+-++..
T Consensus 259 LfKLaian 266 (297)
T COG4785 259 LFKLAVAN 266 (297)
T ss_pred HHHHHHHH
Confidence 77766654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.7e-09 Score=97.36 Aligned_cols=151 Identities=13% Similarity=0.069 Sum_probs=116.2
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+...|..++...+.+++......-.-+|.+++.+|+|++|+..|+-+...+..+.+.+.++|.+++-+|.|.+|.....+
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k 116 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK 116 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 56677888888887777544455566788999999999999999999987777889999999999999999999887665
Q ss_pred HHH--------------hCCC------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 258 ATM--------------ADPG------------DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 258 al~--------------~~p~------------~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
+-+ ++.+ ..+-...+|.+.+.... |++|+..|++++.-+|+....-..++.|+
T Consensus 117 a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~H-YQeAIdvYkrvL~dn~ey~alNVy~ALCy 195 (557)
T KOG3785|consen 117 APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMH-YQEAIDVYKRVLQDNPEYIALNVYMALCY 195 (557)
T ss_pred CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHH-HHHHHHHHHHHHhcChhhhhhHHHHHHHH
Confidence 421 1111 12233446666666554 99999999999999999888888899999
Q ss_pred HHccCchHHHHHHHHHHH
Q 013800 312 WEMEDDGEDDKAQEEHIQ 329 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~ 329 (436)
.++.-++-+...+.-+++
T Consensus 196 yKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 196 YKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HhcchhhhHHHHHHHHHH
Confidence 998888777776664443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4e-09 Score=107.85 Aligned_cols=144 Identities=16% Similarity=0.057 Sum_probs=107.4
Q ss_pred HhCCCCHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-------CHHHHHHHHHHH
Q 013800 226 DEYPCHPLLL--RNYAQLLQKKGD---LYRAEDYYNHATMADPGDGESWMQYAKLVWELHR-------DQHRALTYFERA 293 (436)
Q Consensus 226 ~~~P~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-------d~~~A~~~~~~a 293 (436)
...|.+..+| +..|.-+...++ ..+|+.+|++|++++|+++.++..++.++....+ +...+....+++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3445665544 455655555444 7788999999999999998888888776654421 134556666666
Q ss_pred HHh--CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 013800 294 ALA--APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH 371 (436)
Q Consensus 294 l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 371 (436)
+.+ +|.++.++..+| ..+...|++++|...+++|+.++| +..+|..+|.++...|
T Consensus 411 ~al~~~~~~~~~~~ala----------------------~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G 467 (517)
T PRK10153 411 VALPELNVLPRIYEILA----------------------VQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKG 467 (517)
T ss_pred hhcccCcCChHHHHHHH----------------------HHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcC
Confidence 664 666777777777 666677889999999999999888 4788888899988888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH
Q 013800 372 HDHDKALCYFERAVQASPADSH 393 (436)
Q Consensus 372 ~d~~~A~~~~~~al~~~p~~~~ 393 (436)
+ +++|++.|++|+.++|.++.
T Consensus 468 ~-~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 468 D-NRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred C-HHHHHHHHHHHHhcCCCCch
Confidence 8 89999999999998888764
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.7e-09 Score=87.12 Aligned_cols=103 Identities=18% Similarity=0.201 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---SNILAA 306 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~~~~ 306 (436)
..++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.+++..++ +++|+.+|++++...|++ +.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK-YADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 445666666666666666666666666666554 3455556666555553 666666666666655553 344555
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
+| .++...|++++|+.++.++++..|++..
T Consensus 82 ~~----------------------~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 82 LG----------------------MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HH----------------------HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 55 5555555566666666666655555544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-08 Score=111.65 Aligned_cols=245 Identities=15% Similarity=0.063 Sum_probs=174.7
Q ss_pred CCCChHHHHHhhcCCCCCCC----hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC
Q 013800 178 RPVSPPMYLAMGLGISVPGF----DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH------PLLLRNYAQLLQKKGD 247 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~la~~~~~~g~ 247 (436)
+++.+..++..++...+... ..++..+|.++...|++++|..++++++...... ..++..+|.++...|+
T Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~ 546 (903)
T PRK04841 467 DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF 546 (903)
T ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC
Confidence 45566666666665433222 1345677888888999999999999888753321 2456678888889999
Q ss_pred HHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHc
Q 013800 248 LYRAEDYYNHATMADPG--------DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ-----DSNILAAYACFLWEM 314 (436)
Q Consensus 248 ~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~ 314 (436)
+++|...+++++..... ....+..+|.+++..| ++++|...+++++.+... ....+..++.+....
T Consensus 547 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 547 LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA-RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 99999999988875221 2234556787888876 499999999988876332 244556688888888
Q ss_pred cCchHHHHHHHHHHHH-------------------hHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhc
Q 013800 315 EDDGEDDKAQEEHIQV-------------------LPIQSKGDLEGAEEYFSRAILANPGDG----EIMSQYAKLVWELH 371 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~-------------------~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g 371 (436)
|+.+.|...+.++... ..+...|+.+.|..++.......+... ..+..++.++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 9988888877765432 122345777777777666544322222 12567899999999
Q ss_pred CCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 372 HDHDKALCYFERAVQASP------ADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 372 ~d~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
+ +++|+..+++++.... ....++..+|.++...|+.++|...+.+++++...
T Consensus 706 ~-~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 706 Q-FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred C-HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 9 9999999999987632 22357788999999999999999999999998643
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.2e-09 Score=98.11 Aligned_cols=124 Identities=20% Similarity=0.233 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHH
Q 013800 248 LYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEH 327 (436)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 327 (436)
.++-+.-++.-+..+|+|.+-|..||.+|...++ +..|...|.+++++.|++++.+..+|.++....
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~-~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a------------ 204 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGR-ASDALLAYRNALRLAGDNPEILLGLAEALYYQA------------ 204 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcc-hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------------
Confidence 4566667777788888888888888888888875 888888888888888888888888885543322
Q ss_pred HHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 328 IQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 328 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
......++...++++++.+|.+..+++.||..+++.|+ |.+|...++..+...|.+.
T Consensus 205 -------~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~-~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 205 -------GQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGD-YAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred -------CCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccc-HHHHHHHHHHHHhcCCCCC
Confidence 23456678888888888888888888888888888888 8888888888888776654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.8e-10 Score=106.45 Aligned_cols=189 Identities=17% Similarity=0.135 Sum_probs=123.1
Q ss_pred CCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 013800 212 DDSAEAEEYYKRMIDEYP--CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTY 289 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~ 289 (436)
++.+.++..++..+.... .+..+....|.++...|++++|++.+.+. ++.+.......++...++ ++.|.+.
T Consensus 80 ~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R-~dlA~k~ 153 (290)
T PF04733_consen 80 SDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNR-PDLAEKE 153 (290)
T ss_dssp TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT--HHHHHHH
T ss_pred cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCC-HHHHHHH
Confidence 344555555544433221 23344555566666778888777777653 456666666667777765 8888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 290 FERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG--DLEGAEEYFSRAILANPGDGEIMSQYAKLV 367 (436)
Q Consensus 290 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 367 (436)
++.+-+.+.+..-+....+ ++....| .+++|...|++.....+..+.+++.++.++
T Consensus 154 l~~~~~~~eD~~l~qLa~a----------------------wv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~ 211 (290)
T PF04733_consen 154 LKNMQQIDEDSILTQLAEA----------------------WVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCH 211 (290)
T ss_dssp HHHHHCCSCCHHHHHHHHH----------------------HHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHH----------------------HHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 8777777666554444444 3333333 577888888887666677778888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh-HHHHHHHHHHHhhCCCChhHH
Q 013800 368 WELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEED-EDDSKSSDQFQQVAPIRQGAV 429 (436)
Q Consensus 368 ~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~l~p~~~~a~ 429 (436)
..+|+ |++|...+++++..+|.++.++.+++.+...+|+. +.+.+++.+.....|.++-..
T Consensus 212 l~~~~-~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 212 LQLGH-YEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHCT--HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHhCC-HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 88888 88888888888888888888888888888888877 445566777777777766543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4e-09 Score=103.06 Aligned_cols=161 Identities=9% Similarity=-0.001 Sum_probs=134.2
Q ss_pred hhHhhhhhhCC---CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCH
Q 013800 202 EVVDLIMPNFD---DSAEAEEYYKRMI---DEYPCHPLLLRNYAQLLQKK---------GDLYRAEDYYNHATMADPGDG 266 (436)
Q Consensus 202 ~~lg~~~~~~g---~~~~A~~~~~~al---~~~P~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~ 266 (436)
+..|...+..+ ..+.|+.+|.+++ +++|+.+.+|..+|.++... .+..+|.+..++|++++|.|+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 34444443333 3568999999999 99999999999999999753 345689999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHH
Q 013800 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYF 346 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~ 346 (436)
.++..+|.+++..++ ++.|...|++|+.++|+.+.+|+..| ++....|+.++|.+.+
T Consensus 339 ~a~~~~g~~~~~~~~-~~~a~~~f~rA~~L~Pn~A~~~~~~~----------------------~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 339 KILAIMGLITGLSGQ-AKVSHILFEQAKIHSTDIASLYYYRA----------------------LVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHhhcc-hhhHHHHHHHHhhcCCccHHHHHHHH----------------------HHHHHcCCHHHHHHHH
Confidence 999999999999986 99999999999999999999999999 8888899999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHH
Q 013800 347 SRAILANPGDGEIMSQYAKL-VWELHHDHDKALCYFERAVQ 386 (436)
Q Consensus 347 ~~al~~~p~~~~~~~~la~~-~~~~g~d~~~A~~~~~~al~ 386 (436)
+++++++|.-..+-...-++ .+.... .++|+.+|-+--+
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 435 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKETE 435 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhccc
Confidence 99999999866554444444 444556 7899998876443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-08 Score=93.69 Aligned_cols=203 Identities=14% Similarity=0.079 Sum_probs=159.1
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 013800 210 NFDDSAEAEEYYKRMIDEYPCHP-LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALT 288 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~P~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~ 288 (436)
...+|..|+.+++-....+.+.. ..-..+|.|++.+|+|++|.+.|+-+...+.-+.+.+.++|.+++.+|. |.+|..
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~-Y~eA~~ 112 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ-YIEAKS 112 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH-HHHHHH
Confidence 34788999999988876655443 6677899999999999999999999999888889999999999999987 999987
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHH-------HHHH-hHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 289 YFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE-------HIQV-LPIQSKGDLEGAEEYFSRAILANPGDGEIM 360 (436)
Q Consensus 289 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-------~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (436)
...++ |+.+--...+-.+..+.++..+-...-.. .+.. .+.+..-.|++|++.|++++.-+|+....-
T Consensus 113 ~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alN 188 (557)
T KOG3785|consen 113 IAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALN 188 (557)
T ss_pred HHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhH
Confidence 66554 56655555555555666665554433221 1111 555566789999999999999999988888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013800 361 SQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 361 ~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 418 (436)
.++|.||+++.- |+-+.+.+.-.+...|+...+....+..++++=+-..|....+..
T Consensus 189 Vy~ALCyyKlDY-ydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~l 245 (557)
T KOG3785|consen 189 VYMALCYYKLDY-YDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKEL 245 (557)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHH
Confidence 899999999988 999999999999999999999988888888775555555544443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-09 Score=94.14 Aligned_cols=85 Identities=14% Similarity=0.155 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 230 CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 230 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
..+.+++.+|.++...|++++|+.+|++++...|+. ..++..+|.++...++ +++|+.+|++++...|++...+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE-HDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcccHHHHHH
Confidence 455678888888888899999999999988876653 4688888888888875 999999999999999988888888
Q ss_pred HHHHHHHcc
Q 013800 307 YACFLWEME 315 (436)
Q Consensus 307 la~~~~~~g 315 (436)
+|.++...|
T Consensus 112 lg~~~~~~g 120 (172)
T PRK02603 112 IAVIYHKRG 120 (172)
T ss_pred HHHHHHHcC
Confidence 884444444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=83.53 Aligned_cols=99 Identities=23% Similarity=0.289 Sum_probs=91.1
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 279 (436)
.+..+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|+.++++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57788899999999999999999999999999899999999999999999999999999999999999999999999888
Q ss_pred cCCHHHHHHHHHHHHHhCCC
Q 013800 280 HRDQHRALTYFERAALAAPQ 299 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~ 299 (436)
+. +++|..+++++++..|.
T Consensus 82 ~~-~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GK-YEEALEAYEKALELDPN 100 (100)
T ss_pred Hh-HHHHHHHHHHHHccCCC
Confidence 75 99999999999988763
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-09 Score=82.33 Aligned_cols=93 Identities=17% Similarity=0.301 Sum_probs=88.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 410 (436)
.++...|++++|+..++++++..|.+..++..+|.++...++ +++|+..|++++...|.+..++..++.++...|++++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK-YEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEE 86 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHH
Confidence 778889999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCC
Q 013800 411 DSKSSDQFQQVAPI 424 (436)
Q Consensus 411 A~~~~~~al~l~p~ 424 (436)
|...+.+++...|.
T Consensus 87 a~~~~~~~~~~~~~ 100 (100)
T cd00189 87 ALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHccCCC
Confidence 99999999988763
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.3e-08 Score=89.77 Aligned_cols=181 Identities=13% Similarity=0.030 Sum_probs=137.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHH
Q 013800 230 CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESW---MQYAKLVWELHRDQHRALTYFERAALAAPQD---SNI 303 (436)
Q Consensus 230 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~ 303 (436)
..+..++..|..+...|++++|++.|++++...|..+.+. +.+|.+++..++ +++|+..+++.++..|++ +.+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~-y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD-LPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCcCCCchHHH
Confidence 3567788999999999999999999999999999986554 889999999874 999999999999999886 456
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHH-hHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHH
Q 013800 304 LAAYACFLWEMEDDGEDDKAQEEHIQV-LPIQSKGDLEGAEEYFSRAILANPGDGE-----------------IMSQYAK 365 (436)
Q Consensus 304 ~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~ 365 (436)
++.+|.+....+.. .+..+... .....+....+|+..|++.++..|+..- --+..|.
T Consensus 109 ~Y~~g~~~~~~~~~-----~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~ 183 (243)
T PRK10866 109 LYMRGLTNMALDDS-----ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAE 183 (243)
T ss_pred HHHHHHhhhhcchh-----hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777554332200 00000000 0111122345788889999999887532 1245677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHHHHHHHH
Q 013800 366 LVWELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 366 ~~~~~g~d~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~ 417 (436)
.|++.|. |..|+.-++.+++..|+.+ +++..+..++..+|..++|.+....
T Consensus 184 ~Y~~~~~-y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 184 YYTKRGA-YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHcCc-hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 8899999 9999999999999998754 7889999999999999999876554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-08 Score=90.13 Aligned_cols=166 Identities=15% Similarity=0.114 Sum_probs=128.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Q 013800 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS---NIL 304 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~---~~~ 304 (436)
.+..++..|..++..|++.+|+..|++++...|.. +.+.+.+|.+++..+ ++++|+..|++.++..|+++ .++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~-~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG-DYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 45788999999999999999999999999998864 678999999999987 59999999999999999864 567
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhH---HHHcCCHHHHHHHHHHHHHhCCCCHHH-----------------HHHHH
Q 013800 305 AAYACFLWEMEDDGEDDKAQEEHIQVLP---IQSKGDLEGAEEYFSRAILANPGDGEI-----------------MSQYA 364 (436)
Q Consensus 305 ~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~g~~~~A~~~~~~al~~~p~~~~~-----------------~~~la 364 (436)
+.+|.++..... .. ...++...+|+..|+..+...|+...+ -+.+|
T Consensus 83 Y~~g~~~~~~~~--------------~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 83 YMLGLSYYKQIP--------------GILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp HHHHHHHHHHHH--------------HHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--------------cchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777765544311 22 445566788999999999999986321 24567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHHH
Q 013800 365 KLVWELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWETEEDEDDS 412 (436)
Q Consensus 365 ~~~~~~g~d~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~ 412 (436)
..|++.|. +..|+..++.+++..|+.. +++..++.++.++|..+.|.
T Consensus 149 ~~Y~~~~~-y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 149 RFYYKRGK-YKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHCTT--HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHccc-HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88899999 9999999999999999976 67888999999999988553
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.07 E-value=5e-09 Score=91.77 Aligned_cols=121 Identities=19% Similarity=0.196 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCchHHH
Q 013800 247 DLYRAEDYYNHATMADPGD--GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---SNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 247 ~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~ 321 (436)
.+..+...+...++..+.+ ...++.+|.++...+. +++|+..|++++.+.|+. +.++.++|
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~l~~~~~~~~~~~~~lg------------- 79 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGE-YAEALQNYYEAMRLEIDPYDRSYILYNIG------------- 79 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhccccchhhHHHHHHHH-------------
Confidence 3455555555554555544 5566788877777764 888888888888886653 34777788
Q ss_pred HHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HhcCCHH-------HHHHHHHHHHHh
Q 013800 322 KAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVW-------ELHHDHD-------KALCYFERAVQA 387 (436)
Q Consensus 322 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-------~~g~d~~-------~A~~~~~~al~~ 387 (436)
.++...|++++|+.+|++++.++|.....+.++|.++. .+|+ ++ +|+..|++++..
T Consensus 80 ---------~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~-~~~A~~~~~~a~~~~~~a~~~ 149 (168)
T CHL00033 80 ---------LIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGD-SEIAEAWFDQAAEYWKQAIAL 149 (168)
T ss_pred ---------HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHccc-HHHHHHHHHHHHHHHHHHHHh
Confidence 78888888888888888888888888888888888887 5555 55 444444455555
Q ss_pred CCCC
Q 013800 388 SPAD 391 (436)
Q Consensus 388 ~p~~ 391 (436)
+|.+
T Consensus 150 ~p~~ 153 (168)
T CHL00033 150 APGN 153 (168)
T ss_pred Cccc
Confidence 6653
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-07 Score=84.47 Aligned_cols=203 Identities=23% Similarity=0.290 Sum_probs=174.0
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMID--EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK- 274 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~- 274 (436)
.......+..+...+++..+...+...+. ..+.....+...+..+...+++..++..+.+++...+.........+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 45667777888888999999999999997 678888999999999999999999999999999988887555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHH
Q 013800 275 LVWELHRDQHRALTYFERAALAAPQ---DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 351 (436)
++...+. +++|...|++++...|. ........+ ..+...++++.|+..+.+++.
T Consensus 139 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 139 ALYELGD-YEEALELYEKALELDPELNELAEALLALG----------------------ALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHcCC-HHHHHHHHHHHHhcCCCccchHHHHHHhh----------------------hHHHHhcCHHHHHHHHHHHHh
Confidence 6777764 99999999999887773 444444445 556678999999999999999
Q ss_pred hCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 352 ANPG-DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 352 ~~p~-~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
..+. ....+..++..+...+. +.+|+..+..++...|.....+..++..+...+..+++...+.+++...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGK-YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHccc-HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999 79999999999999998 999999999999999987778888888888888899999999999999886
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.7e-10 Score=81.47 Aligned_cols=68 Identities=25% Similarity=0.396 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013800 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAP 298 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p 298 (436)
++..|..+|.+++..|++++|+.+|+++++++|+++.+|+++|.++..+++++.+|+++++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45566666666666666666666666666666666666666666666665126666666666666665
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.1e-10 Score=81.07 Aligned_cols=68 Identities=13% Similarity=0.284 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-ChHHHHHHHHHHHhhCC
Q 013800 355 GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE-EDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 355 ~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~l~p 423 (436)
+++.+|..+|.+++..|+ +++|+..|.++++++|+++.++.++|.++..+| ++++|++.++++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~-~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGD-YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 357899999999999999 999999999999999999999999999999999 79999999999999987
|
... |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.5e-08 Score=92.74 Aligned_cols=145 Identities=14% Similarity=0.171 Sum_probs=92.6
Q ss_pred cCCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
.+...|-..+.+|+..+. .+...|...+.+-++.....-|..++.+++.+-|.-...|+.+..+-..+|+...|...|+
T Consensus 87 ~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 344466677788888777 5667788888888888888888888888888888777888888888888888888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHH
Q 013800 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE 325 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 325 (436)
+.+...|+. .+|......-...+ +.+.|...|++-+-..|+ ...|..++.+....|+...+...|.
T Consensus 166 rW~~w~P~e-qaW~sfI~fElRyk-eieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 166 RWMEWEPDE-QAWLSFIKFELRYK-EIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred HHHcCCCcH-HHHHHHHHHHHHhh-HHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 888887764 23333333322222 244444455444444432 2334444444444444444444443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-09 Score=102.61 Aligned_cols=170 Identities=19% Similarity=0.121 Sum_probs=140.8
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
......|.++...|++++|++.+.+. ++.++......++..+++++.|...++.+.+.+.+..-+...-+.+.+.
T Consensus 103 ~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~ 177 (290)
T PF04733_consen 103 IVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLA 177 (290)
T ss_dssp HHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 33455667888889999999998875 5778888999999999999999999999988887776666666666666
Q ss_pred HcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013800 279 LHR-DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG 357 (436)
Q Consensus 279 ~~~-d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 357 (436)
.|+ .+.+|.-.|+...+..+..+..+..++ .++..+|+|++|...+++++..+|+++
T Consensus 178 ~g~e~~~~A~y~f~El~~~~~~t~~~lng~A----------------------~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 178 TGGEKYQDAFYIFEELSDKFGSTPKLLNGLA----------------------VCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp HTTTCCCHHHHHHHHHHCCS--SHHHHHHHH----------------------HHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred hCchhHHHHHHHHHHHHhccCCCHHHHHHHH----------------------HHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 665 489999999998888788899999999 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL 395 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~ 395 (436)
+++.+++.+...+|+..+.+.+++.+....+|+++.+.
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 99999999999999944778889999889999987543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-08 Score=103.87 Aligned_cols=155 Identities=10% Similarity=-0.041 Sum_probs=118.6
Q ss_pred HhCCCCHHHHHH--HHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH
Q 013800 260 MADPGDGESWMQ--YAKLVWELH--RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335 (436)
Q Consensus 260 ~~~p~~~~~~~~--la~~~~~~~--~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 335 (436)
..-|.+..+|-. .|.-+.... +++.+|+.+|++|++++|++..++..++.++.....+.. ..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~--------------~~ 396 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQP--------------LD 396 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCC--------------cc
Confidence 345566555543 343333221 137899999999999999999999988865533221100 00
Q ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHH
Q 013800 336 KGDLEGAEEYFSRAILA--NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSK 413 (436)
Q Consensus 336 ~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 413 (436)
..++.++.....+++.+ +|.++.++..+|......|+ +++|...+++|+.++|. ..+|..+|.++...|+.++|++
T Consensus 397 ~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~-~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 397 EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK-TDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHH
Confidence 12456677777777664 77788999999999999999 99999999999999995 8899999999999999999999
Q ss_pred HHHHHHhhCCCChhHHh
Q 013800 414 SSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 414 ~~~~al~l~p~~~~a~~ 430 (436)
.|++|+.++|.++....
T Consensus 475 ~~~~A~~L~P~~pt~~~ 491 (517)
T PRK10153 475 AYSTAFNLRPGENTLYW 491 (517)
T ss_pred HHHHHHhcCCCCchHHH
Confidence 99999999999876544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-08 Score=88.44 Aligned_cols=118 Identities=17% Similarity=0.144 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013800 264 GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 264 ~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
....+++.+|.++...+ ++++|+.+|++++.+.|+. ..++..+| .++...|+++
T Consensus 33 ~~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~la----------------------~~~~~~g~~~ 89 (172)
T PRK02603 33 KEAFVYYRDGMSAQADG-EYAEALENYEEALKLEEDPNDRSYILYNMG----------------------IIYASNGEHD 89 (172)
T ss_pred hhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhccchHHHHHHHHH----------------------HHHHHcCCHH
Confidence 45667888888887776 4999999999999887663 45778888 8888889999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013800 341 GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 341 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (436)
+|+.+|++++...|.+...+..+|.++...|+ ...+...++.++.. +++|++++++++.
T Consensus 90 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~a~~~~~~A~~~--------------------~~~A~~~~~~a~~ 148 (172)
T PRK02603 90 KALEYYHQALELNPKQPSALNNIAVIYHKRGE-KAEEAGDQDEAEAL--------------------FDKAAEYWKQAIR 148 (172)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-hHhHhhCHHHHHHH--------------------HHHHHHHHHHHHh
Confidence 99999999999999999999999999988877 55555444444321 4555566666666
Q ss_pred hCCCC
Q 013800 421 VAPIR 425 (436)
Q Consensus 421 l~p~~ 425 (436)
++|+.
T Consensus 149 ~~p~~ 153 (172)
T PRK02603 149 LAPNN 153 (172)
T ss_pred hCchh
Confidence 55554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-08 Score=92.57 Aligned_cols=205 Identities=13% Similarity=0.046 Sum_probs=146.2
Q ss_pred hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 013800 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALT 288 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~ 288 (436)
.+..+|++|++++.--.+.+|.+-..+..+|.||+...+|..|-++|++.-.+.|+......-.|..++..+. +..|+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i-~ADALr 99 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI-YADALR 99 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc-cHHHHH
Confidence 4456777888888877777887777778888888888888888888888888888777777777777777765 777776
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------hHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 289 YFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----------LPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 289 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
..........-.......-+-+.+..+++..+..++++.-.. -+.++.|+++.|++-|+.|++...-++-
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl 179 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL 179 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch
Confidence 655443321111222233344444555555555555543311 5677889999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCH-------------------------HHHHHHHHHHHHCCChH
Q 013800 359 IMSQYAKLVWELHHDHDKALCYFERAVQA----SPADS-------------------------HVLAAYACFLWETEEDE 409 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~~A~~~~~~al~~----~p~~~-------------------------~~~~~la~~~~~~g~~~ 409 (436)
+-++++.+.++.++ ++.|+++..+.++. .|+.. +++...+.++++.|+++
T Consensus 180 lAYniALaHy~~~q-yasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~e 258 (459)
T KOG4340|consen 180 LAYNLALAHYSSRQ-YASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYE 258 (459)
T ss_pred hHHHHHHHHHhhhh-HHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHH
Confidence 99999999999999 99999988777653 33311 44555677889999998
Q ss_pred HHHHHH
Q 013800 410 DDSKSS 415 (436)
Q Consensus 410 ~A~~~~ 415 (436)
.|.+.+
T Consensus 259 AA~eaL 264 (459)
T KOG4340|consen 259 AAQEAL 264 (459)
T ss_pred HHHHHh
Confidence 885543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-10 Score=105.63 Aligned_cols=222 Identities=11% Similarity=0.014 Sum_probs=167.2
Q ss_pred hhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013800 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 281 (436)
...|+.|+++|.|++|+.+|.+++..+|.++-.+.+.|.+|++..++..|...+..|+.++.....+|...+..-..+|.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 44688999999999999999999999999999999999999999999999999999999999999999999999889986
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---------CchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHHH
Q 013800 282 DQHRALTYFERAALAAPQDSNILAAYACFLWEME---------DDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~~ 348 (436)
..+|.+.++.++++.|++.+....++.+-.-.. .+-.|++-..+.+.. ..+...|.++.++.+|.+
T Consensus 181 -~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~ 259 (536)
T KOG4648|consen 181 -NMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVS 259 (536)
T ss_pred -HHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeec
Confidence 999999999999999998887766654322110 011122222222211 566677788888888877
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013800 349 AILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 349 al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 426 (436)
.+....++.....+ +..+.+.-+ +..|+..+.+++..+|.........+.+..-.|...++...++.++.+.|...
T Consensus 260 ~~A~~~~~~~L~~~-~~~~~KI~~-~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~ 335 (536)
T KOG4648|consen 260 PRATIDDSNQLRIS-DEDIDKIFN-SNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVE 335 (536)
T ss_pred cccccCccccCccc-HHHHHHHhh-cchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccc
Confidence 77666665555555 666777777 88898888888887776554444445554455556666666666666655443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-08 Score=92.21 Aligned_cols=183 Identities=14% Similarity=0.076 Sum_probs=151.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013800 242 LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
+.+..+|.+|++++.--.+.+|.+...+..+|.||+.... |..|..||++.-.+.|......+..+..++..+.+..|+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~-f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQE-FALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 3567889999999999999999999999999999999985 999999999999999999999999999999999999888
Q ss_pred HHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 322 KAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANP--GDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 322 ~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
+........ .+.+..+++..+.. .++.-| +++....+.|.++++.|+ +++|++-|+.|++.
T Consensus 99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rs----LveQlp~en~Ad~~in~gCllykegq-yEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRS----LVEQLPSENEADGQINLGCLLYKEGQ-YEAAVQKFQAALQV 173 (459)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHH----HHHhccCCCccchhccchheeecccc-HHHHHHHHHHHHhh
Confidence 876533321 22333344443333 334445 578899999999999999 99999999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh----CCCChhHHh
Q 013800 388 SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV----APIRQGAVT 430 (436)
Q Consensus 388 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l----~p~~~~a~~ 430 (436)
..-++-.-++++.++++.|+++.|+++...+++. .|.+.-.++
T Consensus 174 sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~ 220 (459)
T KOG4340|consen 174 SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMT 220 (459)
T ss_pred cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccce
Confidence 9998999999999999999999999987766654 466655443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-09 Score=83.47 Aligned_cols=82 Identities=15% Similarity=0.312 Sum_probs=73.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Q 013800 335 SKGDLEGAEEYFSRAILANPG--DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDS 412 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 412 (436)
.+|+|+.|+..|+++++..|. +...++.+|.++++.|+ +++|+..+++ +..++.+....+.+|.++.++|++++|+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~-y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK-YEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH-HHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC-HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 368999999999999999995 56778889999999999 9999999999 8888888899999999999999999999
Q ss_pred HHHHHH
Q 013800 413 KSSDQF 418 (436)
Q Consensus 413 ~~~~~a 418 (436)
++|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999875
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.3e-08 Score=83.61 Aligned_cols=114 Identities=13% Similarity=0.145 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 013800 282 DQHRALTYFERAALAAPQD---SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD-- 356 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-- 356 (436)
++..+...+++.+...|+. ..+.+.++ .++...|++++|+..|+.++...|+.
T Consensus 26 ~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA----------------------~~~~~~g~~~~A~~~l~~~~~~~~d~~l 83 (145)
T PF09976_consen 26 DPAKAEAAAEQLAKDYPSSPYAALAALQLA----------------------KAAYEQGDYDEAKAALEKALANAPDPEL 83 (145)
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHHHhhCCCHHH
Confidence 4777777788888888777 34455566 77777888888888888888877654
Q ss_pred -HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013800 357 -GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 357 -~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 419 (436)
..+.+.||.++...|+ +++|+..++. +.-.+-.+.++..+|.++...|++++|+..|++++
T Consensus 84 ~~~a~l~LA~~~~~~~~-~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 84 KPLARLRLARILLQQGQ-YDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 3567788888888888 8888888865 23334445677788888888888888888888764
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.5e-08 Score=95.38 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=47.4
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 410 (436)
.++.++++|.+|+..+.++|+++|+|..+++..|.++..+|+ |+.|+..|+++++++|+|..+...+..+..+..++.+
T Consensus 265 ~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e-~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ 343 (397)
T KOG0543|consen 265 ACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGE-YDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEE 343 (397)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcc-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555 5555555555555555555555555555444433333
Q ss_pred -HHHHHHHHHh
Q 013800 411 -DSKSSDQFQQ 420 (436)
Q Consensus 411 -A~~~~~~al~ 420 (436)
..+.|...+.
T Consensus 344 kekk~y~~mF~ 354 (397)
T KOG0543|consen 344 KEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhh
Confidence 2444444443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.9e-08 Score=92.92 Aligned_cols=185 Identities=18% Similarity=0.193 Sum_probs=124.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHHcCCHHHH
Q 013800 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP--G----DGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 213 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~~~d~~~A 286 (436)
++++|..+|.++ |.+|...+++++|.+.|.++....- + -...+...+.++... ++++|
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~--~~~~A 93 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG--DPDEA 93 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT--THHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--CHHHH
Confidence 566666665554 5666677777777777777765422 1 133455556565444 58899
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc-CCHHHHHHHHHHHHHhCCC--C----HHH
Q 013800 287 LTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK-GDLEGAEEYFSRAILANPG--D----GEI 359 (436)
Q Consensus 287 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~p~--~----~~~ 359 (436)
+.+|++++.+. ...|++..|...+...- .+|... |++++|+++|++|+++... . ...
T Consensus 94 i~~~~~A~~~y--------------~~~G~~~~aA~~~~~lA--~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~ 157 (282)
T PF14938_consen 94 IECYEKAIEIY--------------REAGRFSQAAKCLKELA--EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAEC 157 (282)
T ss_dssp HHHHHHHHHHH--------------HHCT-HHHHHHHHHHHH--HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHH--------------HhcCcHHHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHH
Confidence 99999887652 22333333322222222 777777 8999999999999987322 1 457
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------H-HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 360 MSQYAKLVWELHHDHDKALCYFERAVQASPAD------S-HVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 360 ~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~------~-~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
+..+|.++..+|+ |++|++.|++.....-++ . ..+...+.+++..|+...|.+.+++.....|.|.....
T Consensus 158 ~~~~A~l~~~l~~-y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E 234 (282)
T PF14938_consen 158 LLKAADLYARLGR-YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE 234 (282)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH
T ss_pred HHHHHHHHHHhCC-HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 7899999999999 999999999998754221 1 34566778899999999999999999999999877543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.4e-09 Score=82.18 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 013800 211 FDDSAEAEEYYKRMIDEYPC--HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALT 288 (436)
Q Consensus 211 ~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~ 288 (436)
.|+++.|+.+|+++++..|. +...++.+|.+++..|++++|+.++++ .+.++.+....+.+|.+++.+++ +++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~-y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK-YEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT--HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC-HHHHHH
Confidence 58999999999999999995 456788899999999999999999999 88888888999999999999986 999999
Q ss_pred HHHHH
Q 013800 289 YFERA 293 (436)
Q Consensus 289 ~~~~a 293 (436)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.6e-08 Score=95.25 Aligned_cols=73 Identities=12% Similarity=0.075 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
..+++|++.|+.++++ |.+|+..+.++|+++|.|..+++..|.++..+|+++.|+..|++++++.|....+..
T Consensus 257 ~~~~lNlA~c~lKl~~-~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~ 329 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKE-YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARA 329 (397)
T ss_pred HHHhhHHHHHHHhhhh-HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 3578899999999999 999999999999999999999999999999999999999999999999999866544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.9e-09 Score=77.38 Aligned_cols=62 Identities=21% Similarity=0.302 Sum_probs=30.9
Q ss_pred HhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 204 VDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD 265 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 265 (436)
+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+.+|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34444555555555555555555555555555555555555555555555555555555544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.9e-07 Score=85.51 Aligned_cols=205 Identities=17% Similarity=0.074 Sum_probs=156.6
Q ss_pred cCCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
.+.+.+..|+..+....+...--.......++...|++..|..-..++++..|.++.++.....+|...|++.+....+.
T Consensus 132 gd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~ 211 (400)
T COG3071 132 GDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILP 211 (400)
T ss_pred ccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHH
Confidence 35556778888887774433345667778899999999999999999999999999999999999999999999999998
Q ss_pred HHHHhCC------------------------------------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 257 HATMADP------------------------------------------GDGESWMQYAKLVWELHRDQHRALTYFERAA 294 (436)
Q Consensus 257 ~al~~~p------------------------------------------~~~~~~~~la~~~~~~~~d~~~A~~~~~~al 294 (436)
+.-+..- .++.+...++.-+...+ ++++|.+..+.++
T Consensus 212 ~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~-~~~~A~~~i~~~L 290 (400)
T COG3071 212 KLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLG-DHDEAQEIIEDAL 290 (400)
T ss_pred HHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcC-ChHHHHHHHHHHH
Confidence 8765411 11445555665566665 5999999999988
Q ss_pred HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ 362 (436)
Q Consensus 295 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (436)
+..-+.. ....++ ....++...-++.+++.++. .++.+.+.|.+|..+|+.+++..|. ...+..
T Consensus 291 k~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~ 366 (400)
T COG3071 291 KRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAE 366 (400)
T ss_pred HhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHH
Confidence 7653332 111111 22334444444444444444 8899999999999999999999887 788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 363 YAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 363 la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
+|.++.++|+ ..+|.+.+++++..
T Consensus 367 la~~~~~~g~-~~~A~~~r~e~L~~ 390 (400)
T COG3071 367 LADALDQLGE-PEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHcCC-hHHHHHHHHHHHHH
Confidence 9999999999 99999999999854
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-08 Score=86.15 Aligned_cols=101 Identities=11% Similarity=0.032 Sum_probs=92.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 410 (436)
.-++.+|++++|...|+-+...+|.+++.|..||.++..+++ |++|+..|..+..++++++...+..|.++..+|+.+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~-y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQ-FQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 777889999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCChhHHhhhh
Q 013800 411 DSKSSDQFQQVAPIRQGAVTTAN 433 (436)
Q Consensus 411 A~~~~~~al~l~p~~~~a~~~an 433 (436)
|+..|..++. .|.+......|.
T Consensus 124 A~~~f~~a~~-~~~~~~l~~~A~ 145 (165)
T PRK15331 124 ARQCFELVNE-RTEDESLRAKAL 145 (165)
T ss_pred HHHHHHHHHh-CcchHHHHHHHH
Confidence 9999999998 455555554443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.6e-09 Score=75.86 Aligned_cols=65 Identities=28% Similarity=0.511 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013800 236 RNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS 301 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~ 301 (436)
+.+|..++..|++++|+..|+++++.+|+++.+|+.+|.+++..++ +++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGR-YDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCCC
Confidence 4689999999999999999999999999999999999999999875 9999999999999999875
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-07 Score=81.11 Aligned_cols=117 Identities=19% Similarity=0.173 Sum_probs=64.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCc
Q 013800 244 KKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---SNILAAYACFLWEMEDD 317 (436)
Q Consensus 244 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~ 317 (436)
..++...+...+++.+...|+. ..+.+.+|.+++..+ ++++|+..|++++...|+. ..+.+.++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g-~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA--------- 92 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQG-DYDEAKAALEKALANAPDPELKPLARLRLA--------- 92 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCHHHHHHHHHHHH---------
Confidence 3455555555555555555555 344455555555554 3666666666666555443 22344445
Q ss_pred hHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013800 318 GEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAV 385 (436)
Q Consensus 318 ~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al 385 (436)
.++...|++++|+..++. +...+-.+.++..+|.++...|+ +++|+..|++||
T Consensus 93 -------------~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~-~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 -------------RILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGD-YDEARAAYQKAL 145 (145)
T ss_pred -------------HHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCC-HHHHHHHHHHhC
Confidence 555566666666666644 22233345556666666666666 666666666553
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-06 Score=87.64 Aligned_cols=212 Identities=17% Similarity=0.049 Sum_probs=132.9
Q ss_pred hhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------
Q 013800 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG----------------- 264 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----------------- 264 (436)
+..+.+.++++..++|+..++ ..++.+..++...|++++++|+|++|...|+..++.+.+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 455667777788888887777 444555566777788888888888888887777543222
Q ss_pred --------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------C-------CHHHHHHHHHHHHHcc
Q 013800 265 --------------DGESWMQYAKLVWELHRDQHRALTYFERAALAAP--------Q-------DSNILAAYACFLWEME 315 (436)
Q Consensus 265 --------------~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p--------~-------~~~~~~~la~~~~~~g 315 (436)
.-+.+++.|.++...++ |.+|++.+++++++.- + -..+...++.++..+|
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gk-y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGK-YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 23456777777777764 8888888877744321 1 1234567777777777
Q ss_pred CchHHHHHHHHHHHH-------------------------------------------------------------hHHH
Q 013800 316 DDGEDDKAQEEHIQV-------------------------------------------------------------LPIQ 334 (436)
Q Consensus 316 ~~~~A~~~~~~~~~~-------------------------------------------------------------~~~~ 334 (436)
+.++|..+|...++. .+.+
T Consensus 239 qt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred chHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777765554 0111
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCChHHHHH
Q 013800 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD-SHVLAAYACFLWETEEDEDDSK 413 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~ 413 (436)
..+.-+++.+...+.-...|...--.........+... +.+|.+.+....+.+|.+ ..+...++++.+.+|+++.|++
T Consensus 319 ~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~-~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 319 FTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKK-HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred HhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHH-HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 11111111111111111122222222233333344445 788899999888889987 5678889999999999999999
Q ss_pred HHHHH
Q 013800 414 SSDQF 418 (436)
Q Consensus 414 ~~~~a 418 (436)
.+...
T Consensus 398 il~~~ 402 (652)
T KOG2376|consen 398 ILSLF 402 (652)
T ss_pred HHHHH
Confidence 99933
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.5e-07 Score=97.85 Aligned_cols=220 Identities=16% Similarity=0.123 Sum_probs=162.2
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHH
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GESW 269 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~ 269 (436)
...++.++...|++++|..++++++...+... .++..+|.++...|++++|...+.+++...... ..++
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~ 534 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSL 534 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 34467788889999999999999998655432 356778899999999999999999999764321 3456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----------
Q 013800 270 MQYAKLVWELHRDQHRALTYFERAALAAPQ--------DSNILAAYACFLWEMEDDGEDDKAQEEHIQV----------- 330 (436)
Q Consensus 270 ~~la~~~~~~~~d~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------- 330 (436)
..+|.+++..| ++++|...+++++.+... ....+..++.+++..|++++|...+.+.+..
T Consensus 535 ~~la~~~~~~G-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 535 LQQSEILFAQG-FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence 67888888876 599999999999886321 2334567888899999999998888765442
Q ss_pred ------hHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----H
Q 013800 331 ------LPIQSKGDLEGAEEYFSRAILANPGD---GEIMS----QYAKLVWELHHDHDKALCYFERAVQASPADS----H 393 (436)
Q Consensus 331 ------~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~----~la~~~~~~g~d~~~A~~~~~~al~~~p~~~----~ 393 (436)
.++...|++++|...+.+++.+.... ..... .....+...|+ .+.|..++.......+... .
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~l~~~~~~~~~~~~~~~~ 692 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGD-KEAAANWLRQAPKPEFANNHFLQG 692 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCC-HHHHHHHHHhcCCCCCccchhHHH
Confidence 57778899999999999997763321 11111 11233444667 8888888777654332222 2
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 394 VLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
.+..++.++...|++++|...+.+++...
T Consensus 693 ~~~~~a~~~~~~g~~~~A~~~l~~al~~~ 721 (903)
T PRK04841 693 QWRNIARAQILLGQFDEAEIILEELNENA 721 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 24678999999999999999999998864
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-06 Score=76.69 Aligned_cols=190 Identities=24% Similarity=0.259 Sum_probs=167.9
Q ss_pred CCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013800 211 FDDSAEAEEYYKRMIDEYPC--HPLLLRNYAQLLQKKGDLYRAEDYYNHATM--ADPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 211 ~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
.+.+..+...+...+...+. ........+..+...+++..+...+...+. ..+.....+..++.++...+. +..+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 114 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGK-YEEA 114 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhh-HHHH
Confidence 46778888889999888886 378889999999999999999999999998 788889999999999888875 9999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh-HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHH
Q 013800 287 LTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL-PIQSKGDLEGAEEYFSRAILANP---GDGEIMSQ 362 (436)
Q Consensus 287 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~ 362 (436)
+..+.+++...+.........+ . ++...|+++.|...|.+++...| .....+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 172 (291)
T COG0457 115 LELLEKALALDPDPDLAEALLA----------------------LGALYELGDYEEALELYEKALELDPELNELAEALLA 172 (291)
T ss_pred HHHHHHHHcCCCCcchHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 9999999999888755555555 5 68889999999999999998777 45667777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 363 YAKLVWELHHDHDKALCYFERAVQASPA-DSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 363 la~~~~~~g~d~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
++..+...++ ++.|+..+.+++...+. ....+..++..+...+++++|+..+.+++...|.
T Consensus 173 ~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 173 LGALLEALGR-YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred hhhHHHHhcC-HHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 7777888888 99999999999999999 6899999999999999999999999999999887
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-07 Score=87.16 Aligned_cols=103 Identities=16% Similarity=0.177 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHH
Q 013800 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAE 343 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~ 343 (436)
..++..|..+....++|++|+..|++.++..|+. +.+++.+| .+|+..|++++|+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG----------------------~~y~~~g~~~~A~ 200 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLG----------------------QLNYNKGKKDDAA 200 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHH----------------------HHHHHcCCHHHHH
Confidence 3444444433222223555555555555555554 34555555 5555555555555
Q ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 344 EYFSRAILANPG---DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 344 ~~~~~al~~~p~---~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
..|+++++..|+ .+++++.+|.++..+|+ +++|+..|+++++..|+..
T Consensus 201 ~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~-~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 201 YYFASVVKNYPKSPKAADAMFKVGVIMQDKGD-TAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCCH
Confidence 555555555444 24455555555555555 5555555555555555544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.3e-08 Score=92.16 Aligned_cols=200 Identities=19% Similarity=0.128 Sum_probs=140.0
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----CH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP--CH----PLLLRNYAQLLQKKGDLYRAEDYYNHATMADP--G----DG 266 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~ 266 (436)
..|...|+.+...+++++|...|.++....- ++ +..+...+.++... ++++|+.+|++++.+.- + -.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4566677888888999999999999987532 11 25666777776665 99999999999998732 2 25
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013800 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQD------SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
..+..+|.+|....+++++|+++|++|+++.... ...+..++ .++...|+|+
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A----------------------~l~~~l~~y~ 172 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAA----------------------DLYARLGRYE 172 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH----------------------HHHHHTT-HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHH----------------------HHHHHhCCHH
Confidence 6788899988777236999999999999874322 12233444 8888999999
Q ss_pred HHHHHHHHHHHhCCCC------H-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHH--CC
Q 013800 341 GAEEYFSRAILANPGD------G-EIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-----HVLAAYACFLWE--TE 406 (436)
Q Consensus 341 ~A~~~~~~al~~~p~~------~-~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~--~g 406 (436)
+|+..|++.....-++ . ..++..+.|+...|+ +..|...+++....+|... .+...+..++.. ..
T Consensus 173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D-~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e 251 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGD-YVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVE 251 (282)
T ss_dssp HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CC
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHH
Confidence 9999999998754221 1 345677788888988 9999999999999988643 344445554432 34
Q ss_pred ChHHHHHHHHHHHhhC
Q 013800 407 EDEDDSKSSDQFQQVA 422 (436)
Q Consensus 407 ~~~~A~~~~~~al~l~ 422 (436)
.+++++..|.+...++
T Consensus 252 ~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 252 AFTEAVAEYDSISRLD 267 (282)
T ss_dssp CHHHHCHHHTTSS---
T ss_pred HHHHHHHHHcccCccH
Confidence 5677777776665554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-07 Score=88.68 Aligned_cols=97 Identities=16% Similarity=0.217 Sum_probs=89.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCC
Q 013800 333 IQSKGDLEGAEEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD---SHVLAAYACFLWETE 406 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g 406 (436)
....|+|++|+..|+..++..|++ +.+++.+|.+++..|+ +++|+..|++++...|++ +++++.+|.++..+|
T Consensus 153 ~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~-~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 153 VQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGK-KDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 356799999999999999999998 5899999999999999 999999999999998885 588999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCChhHHh
Q 013800 407 EDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 407 ~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
++++|...|+++++..|+...+..
T Consensus 232 ~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 232 DTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred CHHHHHHHHHHHHHHCcCCHHHHH
Confidence 999999999999999999876554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.5e-08 Score=81.14 Aligned_cols=76 Identities=16% Similarity=0.032 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
.+..+.+|.-++..|++++|...|+-....+|.+++.|+.||.++..++. |++|+..|-.+..++++++...+..|
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~-y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQ-FQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccCCCCccchHH
Confidence 34455555555556666666665555555555555555555555555543 55555555555555555555555555
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-06 Score=93.46 Aligned_cols=201 Identities=12% Similarity=0.087 Sum_probs=114.2
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHH-hCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMID-EYPCH----PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWM 270 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~P~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 270 (436)
+..-.|+..-....+.++.++|.+..++|+. +++.. ..+|..+-++...-|.-+.-.+.|++|.+... -..++.
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~~ 1534 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD-AYTVHL 1534 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHHH
Confidence 4444555555555555666666666666554 22221 13344444444444444455555555555432 123444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHH
Q 013800 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAI 350 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 350 (436)
.|..+|...+. +++|.++|+..++.-.+...+|..++ ..++.+.+-+.|...+.+||
T Consensus 1535 ~L~~iy~k~ek-~~~A~ell~~m~KKF~q~~~vW~~y~----------------------~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1535 KLLGIYEKSEK-NDEADELLRLMLKKFGQTRKVWIMYA----------------------DFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHHHhhc-chhHHHHHHHHHHHhcchhhHHHHHH----------------------HHHhcccHHHHHHHHHHHHH
Confidence 45555555544 56666666666665555556666666 44445555566666666666
Q ss_pred HhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 351 LANPG--DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 351 ~~~p~--~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
+.-|. +.+...-.|.+.++.|+ .+.+..+|+-.+..+|.-.+.|..+...-...|+.+.+...|++++.+
T Consensus 1592 ~~lPk~eHv~~IskfAqLEFk~GD-aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1592 KSLPKQEHVEFISKFAQLEFKYGD-AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred hhcchhhhHHHHHHHHHHHhhcCC-chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 66665 55666666666666666 666666666666666666666666666666666666666666666655
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.80 E-value=2e-07 Score=91.59 Aligned_cols=117 Identities=22% Similarity=0.198 Sum_probs=75.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCch
Q 013800 239 AQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDG 318 (436)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 318 (436)
-.++...++++.|++.+++..+.+|+ +...++.++...++ ..+|++.++++++..|.+...+...+
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~-E~~AI~ll~~aL~~~p~d~~LL~~Qa---------- 241 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNE-EVEAIRLLNEALKENPQDSELLNLQA---------- 241 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCc-HHHHHHHHHHHHHhCCCCHHHHHHHH----------
Confidence 34444556677777777766666654 44445666555543 66677777777766676666666666
Q ss_pred HHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013800 319 EDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFE 382 (436)
Q Consensus 319 ~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~ 382 (436)
..+...++++.|+.+.++++.+.|.+...|+.|+.+|..+|+ +++|+..+.
T Consensus 242 ------------~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d-~e~ALlaLN 292 (395)
T PF09295_consen 242 ------------EFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGD-FENALLALN 292 (395)
T ss_pred ------------HHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC-HHHHHHHHh
Confidence 555666666777777777777777777777777777777766 777665554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-08 Score=73.69 Aligned_cols=66 Identities=24% Similarity=0.225 Sum_probs=53.5
Q ss_pred hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 274 (436)
+..|++++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456888888888888888888888888888888888888888888888888888888777766664
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-06 Score=75.22 Aligned_cols=152 Identities=17% Similarity=0.125 Sum_probs=111.0
Q ss_pred hhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013800 208 MPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM-ADPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 208 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
..+.=+.+....-..+.++..| ...-.+.+|..+...|++.+|..+|++++. +.-+++..+..++...+..+. +..|
T Consensus 66 ~~q~ldP~R~~Rea~~~~~~Ap-Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~-~A~a 143 (251)
T COG4700 66 LQQKLDPERHLREATEELAIAP-TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE-FAAA 143 (251)
T ss_pred HHHhcChhHHHHHHHHHHhhch-hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc-HHHH
Confidence 3334455556665666666666 334567788888888888888888888876 466778888888888888864 8888
Q ss_pred HHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 287 LTYFERAALAAPQ--DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYA 364 (436)
Q Consensus 287 ~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 364 (436)
...+++..+.+|. .++....++ +.+..+|++.+|...|+.++...|+ +++...++
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~a----------------------R~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~ 200 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFA----------------------RTLAAQGKYADAESAFEVAISYYPG-PQARIYYA 200 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHH----------------------HHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHH
Confidence 8888888888775 456666677 7777788888888888888888777 77777788
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 013800 365 KLVWELHHDHDKALCYFERAV 385 (436)
Q Consensus 365 ~~~~~~g~d~~~A~~~~~~al 385 (436)
..+..+|+ .++|...+....
T Consensus 201 e~La~qgr-~~ea~aq~~~v~ 220 (251)
T COG4700 201 EMLAKQGR-LREANAQYVAVV 220 (251)
T ss_pred HHHHHhcc-hhHHHHHHHHHH
Confidence 88888887 666666555443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.4e-07 Score=91.00 Aligned_cols=112 Identities=17% Similarity=0.171 Sum_probs=102.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIM 360 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (436)
+.++.|+..|++..+.+|+ +...++ .++...++-.+|++.+.++++..|.+...+
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA----------------------~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL 237 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLA----------------------RVYLLMNEEVEAIRLLNEALKENPQDSELL 237 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHH----------------------HHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 4599999999999999876 455567 777778899999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013800 361 SQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 361 ~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 418 (436)
...+..+...++ ++.|+...++++.+.|.+...|..|+.+|..+|+++.|+..++.+
T Consensus 238 ~~Qa~fLl~k~~-~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 238 NLQAEFLLSKKK-YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999 999999999999999999999999999999999999998777643
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.3e-06 Score=75.42 Aligned_cols=185 Identities=15% Similarity=0.093 Sum_probs=130.0
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG---ESWMQY 272 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l 272 (436)
.-|...|...++.|++++|+..|+.+...+|..+ .+.+.++.++++.+++++|+..+++-+.+.|.++ .+++..
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 3455555566666999999999999999998765 7889999999999999999999999999988764 466777
Q ss_pred HHHHHHHcC----C---HHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH
Q 013800 273 AKLVWELHR----D---QHRALTYFERAALAAPQDSNIL---AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA 342 (436)
Q Consensus 273 a~~~~~~~~----d---~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A 342 (436)
|.+++..-. | ..+|+..|+..++..|+...+- ..+..+-..+... +-.+. +.|.+.|.|-.|
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~-------Em~Ia-ryY~kr~~~~AA 186 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH-------EMAIA-RYYLKRGAYVAA 186 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH-------HHHHH-HHHHHhcChHHH
Confidence 777654322 2 2578899999999999854322 2222111111111 11111 778888888888
Q ss_pred HHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 343 EEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 343 ~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
+..++.+++..|+. .+++..+..+|..+|- .++|.+.-.-.-...|++.
T Consensus 187 ~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl-~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 187 INRFEEVLENYPDTSAVREALARLEEAYYALGL-TDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhCC-hHHHHHHHHHHHhcCCCCc
Confidence 88888888886654 4567777788888888 7777665443333345543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.7e-08 Score=72.13 Aligned_cols=67 Identities=22% Similarity=0.271 Sum_probs=59.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 334 QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 334 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
...|++++|+..|++++..+|++..+++.+|.++...|+ +++|...+++++..+|+++.++..++.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ-YDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT--HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 467999999999999999999999999999999999999 9999999999999999988777777653
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.1e-07 Score=74.30 Aligned_cols=74 Identities=23% Similarity=0.193 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 013800 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQ---DSNILAAY 307 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~---~~~~~~~l 307 (436)
+++.+|.++...|+.++|+.+|++++...... ..++..+|..+..+|+ +++|+..+++++...|+ +..+...+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~-~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGR-YDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 44555555555555555555555555543222 3344455555555543 55555555555554444 44444444
Q ss_pred H
Q 013800 308 A 308 (436)
Q Consensus 308 a 308 (436)
+
T Consensus 82 A 82 (120)
T PF12688_consen 82 A 82 (120)
T ss_pred H
Confidence 4
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.6e-07 Score=80.05 Aligned_cols=108 Identities=18% Similarity=0.152 Sum_probs=97.3
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 274 (436)
....-|+-++..|+|++|..-|..+++.-|... -+|.+.|.++.+++.++.|++...++|+++|.+..++...|.
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe 176 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE 176 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence 345567888999999999999999999998754 467899999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
+|..+.. |++|+..|+++++.+|....+....+
T Consensus 177 ayek~ek-~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 177 AYEKMEK-YEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HHHhhhh-HHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 9999976 99999999999999999877766555
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.7e-08 Score=90.99 Aligned_cols=109 Identities=16% Similarity=0.100 Sum_probs=97.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 314 (436)
+-..|+-|+++|.|++|+.+|.+++..+|.++..+.+.|..|+...+ |..|...+..|+.++.....+|-..+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~-FA~AE~DC~~AiaLd~~Y~KAYSRR~------ 172 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKS-FAQAEEDCEAAIALDKLYVKAYSRRM------ 172 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHH-HHHHHHhHHHHHHhhHHHHHHHHHHH------
Confidence 56789999999999999999999999999999999999999999987 99999999999999988888888888
Q ss_pred cCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL 366 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (436)
.+...+|...+|.+.++.+|++.|++.+..-.++.+
T Consensus 173 ----------------~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 173 ----------------QARESLGNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred ----------------HHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 777788999999999999999999877766555543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.6e-07 Score=73.08 Aligned_cols=90 Identities=20% Similarity=0.178 Sum_probs=81.6
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPA---DSHVLAAYACFLWE 404 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~ 404 (436)
.++...|+.++|+.+|++++...... ..++..+|.++..+|+ +++|+..+++++...|+ +..+...++.++..
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~-~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGR-YDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 88899999999999999999976544 5689999999999999 99999999999999898 77888889999999
Q ss_pred CCChHHHHHHHHHHHhh
Q 013800 405 TEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 405 ~g~~~~A~~~~~~al~l 421 (436)
.|+.++|+..+-.++.-
T Consensus 88 ~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 88 LGRPKEALEWLLEALAE 104 (120)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887753
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-07 Score=70.14 Aligned_cols=67 Identities=24% Similarity=0.198 Sum_probs=40.7
Q ss_pred hhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 206 LIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272 (436)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 272 (436)
.++...+++++|++++++++..+|+++..+..+|.++..+|++++|++.|+++++..|+++.+...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 3455556666666666666666666666666666666666666666666666666666655554433
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.1e-07 Score=80.65 Aligned_cols=99 Identities=19% Similarity=0.230 Sum_probs=91.6
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGD-----GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET 405 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 405 (436)
.-++..|+|++|...|..||++.|.. ...|.+.|.++++++. ++.|+..+.++++++|.+..++...|.+|.++
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k-~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRK-WESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhh-HHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 66778999999999999999999875 3578899999999999 99999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCChhHHh
Q 013800 406 EEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 406 g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
..+++|++.|+++++++|..+.+..
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHH
Confidence 9999999999999999999887654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.2e-06 Score=70.87 Aligned_cols=158 Identities=18% Similarity=0.143 Sum_probs=126.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHccCchHHH
Q 013800 243 QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAAL-AAPQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
.++=+.+.+..-..+.+...|.. .-.+.+|..+.+.|+ +.+|...|++++. +..+++..+..++
T Consensus 67 ~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr-~~EA~~hy~qalsG~fA~d~a~lLglA------------- 131 (251)
T COG4700 67 QQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGR-YHEAVPHYQQALSGIFAHDAAMLLGLA------------- 131 (251)
T ss_pred HHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhh-hhhhHHHHHHHhccccCCCHHHHHHHH-------------
Confidence 33444555555555556666654 345778889999986 9999999999986 4577889999999
Q ss_pred HHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 322 KAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG--DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYA 399 (436)
Q Consensus 322 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la 399 (436)
...+..+++..|...+++..+.+|. .++....+|.++...|+ +.+|...|+.++...|+ +.+...++
T Consensus 132 ---------~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~-~a~Aesafe~a~~~ypg-~~ar~~Y~ 200 (251)
T COG4700 132 ---------QAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGK-YADAESAFEVAISYYPG-PQARIYYA 200 (251)
T ss_pred ---------HHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCC-chhHHHHHHHHHHhCCC-HHHHHHHH
Confidence 7788899999999999999999885 57888999999999999 99999999999999998 78889999
Q ss_pred HHHHHCCChHHHHHHHHH----HHhhCCCCh
Q 013800 400 CFLWETEEDEDDSKSSDQ----FQQVAPIRQ 426 (436)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~----al~l~p~~~ 426 (436)
..+..+|+.++|...+.. +..-.|+|.
T Consensus 201 e~La~qgr~~ea~aq~~~v~d~~~r~~~H~r 231 (251)
T COG4700 201 EMLAKQGRLREANAQYVAVVDTAKRSRPHYR 231 (251)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhcchhHH
Confidence 999999988887665544 444445543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.8e-07 Score=68.46 Aligned_cols=69 Identities=32% Similarity=0.360 Sum_probs=60.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~ 400 (436)
.+|...++|++|++++++++.++|+++..|..+|.++..+|+ +.+|+..|+++++..|+++.+....+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGR-YEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhcc-HHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 567888999999999999999999999999999999999999 999999999999999988877665543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.5e-06 Score=78.63 Aligned_cols=220 Identities=15% Similarity=0.098 Sum_probs=122.2
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GES 268 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 268 (436)
++.+++..+.+..++.+++.+-+..+.+....+ .+...++.++.-++.++++++.|++|+...-++ -.+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344444444444455555554444444321111 334445555555555555555555555442211 234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHccCchHHHHHHHHHHHH--------
Q 013800 269 WMQYAKLVWELHRDQHRALTYFERAALAAPQ----------DSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------- 330 (436)
Q Consensus 269 ~~~la~~~~~~~~d~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------- 330 (436)
+..+|.++..+. |+++|+-+..+|.++-.. ...+++.++..+...|....|.+..+++.+.
T Consensus 165 cv~Lgslf~~l~-D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 165 CVSLGSLFAQLK-DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhHHHHHHHHH-hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 444554444443 355555555555544211 1223344555555555555555555544333
Q ss_pred ----------hHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHhCC
Q 013800 331 ----------LPIQSKGDLEGAEEYFSRAILANP------GDGEIMSQYAKLVWELHHDHD-----KALCYFERAVQASP 389 (436)
Q Consensus 331 ----------~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~d~~-----~A~~~~~~al~~~p 389 (436)
.+|...|+.+.|..-|++|+..-. ...+++...|.++....- .. +|++.-.+++++..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~-~~k~~~Crale~n~r~levA~ 322 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRL-QNKICNCRALEFNTRLLEVAS 322 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHH
Confidence 788888999999999998876532 134566666666654433 33 48888888887654
Q ss_pred CCH------HHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 390 ADS------HVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 390 ~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
.-. ..+..++.+|..+|..++-.+.+.++-+.
T Consensus 323 ~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 323 SIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 422 56788899999999888877777665543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-05 Score=80.48 Aligned_cols=49 Identities=8% Similarity=-0.054 Sum_probs=40.9
Q ss_pred CCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHh
Q 013800 179 PVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE 227 (436)
Q Consensus 179 p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 227 (436)
.-+..+....|+..-.-..+-.|..++..|.+.|.++.|...|++++..
T Consensus 229 slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 229 SLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred ccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3467788888887766455678999999999999999999999998874
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.5e-06 Score=75.00 Aligned_cols=174 Identities=17% Similarity=0.094 Sum_probs=126.8
Q ss_pred HHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 186 LAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD 265 (436)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 265 (436)
+..++++.| ..+..+..+|..+...|+|+.|.+.|...++++|.+.-+..+.|..++.-|++.-|.+.+.+-.+.+|.+
T Consensus 88 ftQaLai~P-~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D 166 (297)
T COG4785 88 FSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND 166 (297)
T ss_pred hhhhhhcCC-CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCC
Confidence 778899999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHH
Q 013800 266 GESWMQYAKLVWELHRDQHRALTYFE-RAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEE 344 (436)
Q Consensus 266 ~~~~~~la~~~~~~~~d~~~A~~~~~-~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~ 344 (436)
|.--..+-. .+..-|+.+|...+. ++...+.+.. .|+. +-+-.|+..+ ..
T Consensus 167 PfR~LWLYl--~E~k~dP~~A~tnL~qR~~~~d~e~W-G~~i-------------------------V~~yLgkiS~-e~ 217 (297)
T COG4785 167 PFRSLWLYL--NEQKLDPKQAKTNLKQRAEKSDKEQW-GWNI-------------------------VEFYLGKISE-ET 217 (297)
T ss_pred hHHHHHHHH--HHhhCCHHHHHHHHHHHHHhccHhhh-hHHH-------------------------HHHHHhhccH-HH
Confidence 854333322 222335777776543 4443332211 1111 1111222221 12
Q ss_pred HHHHHHHhCCCC-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 345 YFSRAILANPGD-------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 345 ~~~~al~~~p~~-------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
.++++..-..++ .++++.+|..+...|+ .++|...|+-++..+--
T Consensus 218 l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~-~~~A~~LfKLaiannVy 269 (297)
T COG4785 218 LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD-LDEATALFKLAVANNVY 269 (297)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhHH
Confidence 233333322222 4688999999999999 99999999999876643
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=3e-07 Score=90.04 Aligned_cols=73 Identities=16% Similarity=0.106 Sum_probs=66.4
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHCCChHHHHHHHHHHHhh-CCCC
Q 013800 352 ANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHV---LAAYACFLWETEEDEDDSKSSDQFQQV-APIR 425 (436)
Q Consensus 352 ~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~l-~p~~ 425 (436)
.+|+++..|+++|.+|+.+|+ |++|+..|+++++++|++..+ |+++|.+|..+|+.++|++++++++++ ++.|
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGr-yeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f 146 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGR-VKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKF 146 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhH
Confidence 468899999999999999999 999999999999999999854 999999999999999999999999997 4544
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.9e-07 Score=75.69 Aligned_cols=107 Identities=22% Similarity=0.229 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ 362 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (436)
|+.|.+.++.....+|.+++.++++|.++..+.++.... .....+++|+.-|++||.++|+..+++++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~------------es~~miedAisK~eeAL~I~P~~hdAlw~ 74 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGP------------ESKKMIEDAISKFEEALKINPNKHDALWC 74 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HH------------HHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcc------------hHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 677888888888888888888888887777754332111 12245688999999999999999999999
Q ss_pred HHHHHHHhcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 363 YAKLVWELHH----------DHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 363 la~~~~~~g~----------d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
+|.++..++. -|++|..+|++|+..+|++......|-.+
T Consensus 75 lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 75 LGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999976542 17889999999999999987666555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.6e-06 Score=68.83 Aligned_cols=96 Identities=16% Similarity=0.224 Sum_probs=87.5
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCC
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS----HVLAAYACFLWETE 406 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g 406 (436)
..+...|+.+.|++.|.+++.+.|..+.+|++.+.++.-+|+ .++|++.+.+++++..... .++...|.+|..+|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~-~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGD-DEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCC-hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 677789999999999999999999999999999999999999 8999999999999976543 67788999999999
Q ss_pred ChHHHHHHHHHHHhhCCCChh
Q 013800 407 EDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 407 ~~~~A~~~~~~al~l~p~~~~ 427 (436)
+.+.|...|+.+.++-..|..
T Consensus 130 ~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred chHHHHHhHHHHHHhCCHHHH
Confidence 999999999999998766654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.2e-05 Score=70.64 Aligned_cols=214 Identities=17% Similarity=0.068 Sum_probs=172.8
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC---HHHHHHHHHHHHHHc
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA---DPGD---GESWMQYAKLVWELH 280 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~---~~~~~~la~~~~~~~ 280 (436)
.....|+.+.|+.+-+++....|.-+.++...-......|+++.|++..+...+. .++. ..+-..-+.......
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 3456799999999999999999999988888888889999999999999877653 3322 223333334444444
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------hHHHHcCCHHHHHHHHHHH---H
Q 013800 281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------LPIQSKGDLEGAEEYFSRA---I 350 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~g~~~~A~~~~~~a---l 350 (436)
-|...|...-.+++++.|+...+-..-+..+...|+..++-.+++...+. .+|....--+.++.-++++ .
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~ 322 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLE 322 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999988887 5555544444555555554 4
Q ss_pred HhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHhhC
Q 013800 351 LANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLW-ETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 351 ~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~l~ 422 (436)
.+.|++.+....++..-+.-|+ +..|...-+.+....|. ..++..++.+.. +.|+..+....+.+++.-+
T Consensus 323 slk~nnaes~~~va~aAlda~e-~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGE-FSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred hcCccchHHHHHHHHHHHhccc-hHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 5689999999999999999999 99999999999999998 456777787755 4599999999999999864
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.7e-05 Score=70.77 Aligned_cols=160 Identities=19% Similarity=0.126 Sum_probs=89.0
Q ss_pred HhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---c
Q 013800 204 VDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL---H 280 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~ 280 (436)
-+.+++..|++++|+...... .+.++...-..++.++.+.+-|+..+++...++.+. .+..||..+... +
T Consensus 114 aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGG 186 (299)
T ss_pred hhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccc
Confidence 345566666666666655542 234455555556666666666666666666554432 222222222211 1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIM 360 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (436)
..+.+|.-+|+..-+..|-.+..+..++ .+...+|+|++|...++.+|..++++++++
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~A----------------------v~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQA----------------------VCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHH----------------------HHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 1255566666666555555555555566 555666666666666666666666666666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 361 SQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 361 ~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
.|+..+-...|.|.+.-.+.+.+....+|.++
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 66666666666644444445555555556544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.5e-05 Score=84.62 Aligned_cols=197 Identities=11% Similarity=0.133 Sum_probs=159.6
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
..|+.+=++....|.-+.-.+.|++|.+... -..+|..|..+|...+++++|.++|+..++...+...+|..+|..++.
T Consensus 1498 NiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1498 NIWIAYLNLENAYGTEESLKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR 1576 (1710)
T ss_pred HHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 4566666666666877888999999988753 357889999999999999999999999999988999999999999988
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 279 LHRDQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
... -+.|...+++|++.-|. +.+.....| .+.++.|+.+.+..+|+..+..+|.-
T Consensus 1577 ~ne-~~aa~~lL~rAL~~lPk~eHv~~IskfA----------------------qLEFk~GDaeRGRtlfEgll~ayPKR 1633 (1710)
T KOG1070|consen 1577 QNE-AEAARELLKRALKSLPKQEHVEFISKFA----------------------QLEFKYGDAERGRTLFEGLLSAYPKR 1633 (1710)
T ss_pred ccH-HHHHHHHHHHHHhhcchhhhHHHHHHHH----------------------HHHhhcCCchhhHHHHHHHHhhCccc
Confidence 864 78999999999999998 677777777 78888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHH-HHHHHHHHCCChHHHHHHHHHHHh
Q 013800 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQAS--PADSHVLA-AYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~--p~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~ 420 (436)
.++|.-+...-.+.|+ .+.+..+|++++.+. |......+ .+-......|+.......-.+|.+
T Consensus 1634 tDlW~VYid~eik~~~-~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1634 TDLWSVYIDMEIKHGD-IKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred hhHHHHHHHHHHccCC-HHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 9999999999999999 899999999999875 33333332 233333444665554444444544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.4e-06 Score=76.82 Aligned_cols=198 Identities=15% Similarity=0.063 Sum_probs=139.9
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHH----hCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHH
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMID----EYPCH--PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD-----GESW 269 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~----~~P~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 269 (436)
++.+..+..+.|+|.+++.+---.++ .+... -+++.+++..+....++.+++.+-+-.+.+-... ..+.
T Consensus 46 lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~ 125 (518)
T KOG1941|consen 46 LGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVS 125 (518)
T ss_pred hccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhh
Confidence 34444566777777776655433333 22111 2567788888888888888888777777663322 3566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHH
Q 013800 270 MQYAKLVWELHRDQHRALTYFERAALAAPQDS------NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAE 343 (436)
Q Consensus 270 ~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~ 343 (436)
..++..+..+++ ++++++.|++|+++.-++. .+...++ .++....++++|.
T Consensus 126 l~~~~Ahlgls~-fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg----------------------slf~~l~D~~Kal 182 (518)
T KOG1941|consen 126 LSMGNAHLGLSV-FQKALESFEKALRYAHNNDDAMLELQVCVSLG----------------------SLFAQLKDYEKAL 182 (518)
T ss_pred hhHHHHhhhHHH-HHHHHHHHHHHHHHhhccCCceeeeehhhhHH----------------------HHHHHHHhhhHHh
Confidence 667777788876 8888888888887754432 3445666 7777788888888
Q ss_pred HHHHHHHHhCC----CC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCC
Q 013800 344 EYFSRAILANP----GD------GEIMSQYAKLVWELHHDHDKALCYFERAVQAS------PADSHVLAAYACFLWETEE 407 (436)
Q Consensus 344 ~~~~~al~~~p----~~------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~ 407 (436)
-+..+|.++.. ++ .-+++.++..+..+|. .-.|.++++++.++. +-.......+|.+|...|+
T Consensus 183 ~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~-LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd 261 (518)
T KOG1941|consen 183 FFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGR-LGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGD 261 (518)
T ss_pred hhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhccc
Confidence 88888877632 12 3467788888999999 999999999987763 2233566788999999999
Q ss_pred hHHHHHHHHHHHhhC
Q 013800 408 DEDDSKSSDQFQQVA 422 (436)
Q Consensus 408 ~~~A~~~~~~al~l~ 422 (436)
.+.|..-|+++...-
T Consensus 262 ~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 262 LERAFRRYEQAMGTM 276 (518)
T ss_pred HhHHHHHHHHHHHHH
Confidence 999999999988753
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.2e-05 Score=79.71 Aligned_cols=110 Identities=15% Similarity=0.056 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFE 291 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~ 291 (436)
+++.+|+....+.++..|+...+....|.++.++|+.++|..+++..-...+++...+-.+-.+|..+++ +++|..+|+
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~-~d~~~~~Ye 101 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK-LDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh-hhHHHHHHH
Confidence 5666666666666666666666666666666666666666655555555555566666666666666654 666666666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCchHHHHH
Q 013800 292 RAALAAPQDSNILAAYACFLWEMEDDGEDDKA 323 (436)
Q Consensus 292 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 323 (436)
+++..+|. ......+-.++.+.+.+.+-.++
T Consensus 102 ~~~~~~P~-eell~~lFmayvR~~~yk~qQka 132 (932)
T KOG2053|consen 102 RANQKYPS-EELLYHLFMAYVREKSYKKQQKA 132 (932)
T ss_pred HHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666 55555555555555555443333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.9e-06 Score=76.31 Aligned_cols=107 Identities=17% Similarity=0.141 Sum_probs=95.8
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHH
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG---DGESWMQYAK 274 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~ 274 (436)
.++.+.-++..|+|..|...|..-++..|+.. .+++.||.+++.+|++++|...|..+++..|+ -++.++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 56677777888999999999999999999864 89999999999999999999999999998776 4789999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
++..+++ .++|...|+++++..|+...+.....
T Consensus 224 ~~~~l~~-~d~A~atl~qv~k~YP~t~aA~~Ak~ 256 (262)
T COG1729 224 SLGRLGN-TDEACATLQQVIKRYPGTDAAKLAKV 256 (262)
T ss_pred HHHHhcC-HHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 9999986 99999999999999999887765443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1e-06 Score=86.32 Aligned_cols=70 Identities=21% Similarity=0.140 Sum_probs=66.0
Q ss_pred hCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhcC
Q 013800 296 AAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEI---MSQYAKLVWELHH 372 (436)
Q Consensus 296 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~ 372 (436)
.+|+++.+|+++| .+|..+|+|++|+..|+++|+++|++.++ |+++|.+|..+|+
T Consensus 70 ~dP~~a~a~~NLG----------------------~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr 127 (453)
T PLN03098 70 ADVKTAEDAVNLG----------------------LSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE 127 (453)
T ss_pred CCCCCHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC
Confidence 4688999999999 88999999999999999999999999865 9999999999999
Q ss_pred CHHHHHHHHHHHHHhC
Q 013800 373 DHDKALCYFERAVQAS 388 (436)
Q Consensus 373 d~~~A~~~~~~al~~~ 388 (436)
+++|+.+|++|+++.
T Consensus 128 -~dEAla~LrrALels 142 (453)
T PLN03098 128 -GKKAADCLRTALRDY 142 (453)
T ss_pred -HHHHHHHHHHHHHhc
Confidence 999999999999983
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.9e-06 Score=72.08 Aligned_cols=107 Identities=18% Similarity=0.178 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchH
Q 013800 249 YRAEDYYNHATMADPGDGESWMQYAKLVWELHR---------DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGE 319 (436)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---------d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 319 (436)
+.|.+.++.....+|.+++.+++.|.++.++.+ -+++|+.-|++||.++|+..++++++|.++...+....
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 334444444444444444444444444433321 15678888888999999999999999988877552111
Q ss_pred HHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 320 DDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL 366 (436)
Q Consensus 320 A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (436)
..-....-|++|..+|++|...+|.+...+..|..+
T Consensus 88 -----------d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 88 -----------DTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred -----------ChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 111122457899999999999999987666555433
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.2e-06 Score=77.49 Aligned_cols=134 Identities=19% Similarity=0.282 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWE 313 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 313 (436)
+|..+.....+.+..+.|..+|.+|.+..+....+|...|.+-+..++|.+.|..+|+.+++..|.+...|..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~----- 77 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYL----- 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHH-----
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHH-----
Confidence 344444444444445555555555553333344555555555444444444455555555555555555555555
Q ss_pred ccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 314 MEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG---EIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
..+...++.+.|..+|++++..-|... .+|..+...-...|+ .+....+.+++.+..|+
T Consensus 78 -----------------~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd-l~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 78 -----------------DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD-LESVRKVEKRAEELFPE 139 (280)
T ss_dssp -----------------HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTT
T ss_pred -----------------HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhhh
Confidence 333344444455555555544433322 344444444444554 55555555555554444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.3e-05 Score=78.93 Aligned_cols=198 Identities=16% Similarity=0.135 Sum_probs=105.1
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP----CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG---------- 264 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------- 264 (436)
..|..+|.+|...|+.+.|..+|+++++.+= +-+.+|...|..-.+..+++.|+.+.++|...-..
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 4566666666666666666666666666432 12355666666666666666666666666543111
Q ss_pred --------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc
Q 013800 265 --------DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK 336 (436)
Q Consensus 265 --------~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 336 (436)
...+|..++.+....|- ++.....|++.+++.--.+....++|.++. ..
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gt-festk~vYdriidLriaTPqii~NyAmfLE----------------------eh 524 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGT-FESTKAVYDRIIDLRIATPQIIINYAMFLE----------------------EH 524 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH----------------------hh
Confidence 13355555555444543 666666666666666666666666664444 44
Q ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHhCCCC-H-HHHHHHHHHHHHCCChHH
Q 013800 337 GDLEGAEEYFSRAILAN--PGDGEIMSQYAKLVW--ELHHDHDKALCYFERAVQASPAD-S-HVLAAYACFLWETEEDED 410 (436)
Q Consensus 337 g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~--~~g~d~~~A~~~~~~al~~~p~~-~-~~~~~la~~~~~~g~~~~ 410 (436)
.-++++.+.|++.+.+. |.-.++|+.+-..+. ..|...+.|..+|++||+..|.. . .++..++.+..+.|-...
T Consensus 525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~ 604 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARH 604 (835)
T ss_pred HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44555555565555553 233334433222211 11222555666666666555421 1 334444555555555555
Q ss_pred HHHHHHHHH
Q 013800 411 DSKSSDQFQ 419 (436)
Q Consensus 411 A~~~~~~al 419 (436)
|+.+|+++-
T Consensus 605 amsiyerat 613 (835)
T KOG2047|consen 605 AMSIYERAT 613 (835)
T ss_pred HHHHHHHHH
Confidence 555555544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00013 Score=66.42 Aligned_cols=196 Identities=13% Similarity=0.080 Sum_probs=139.8
Q ss_pred hhhhhhCCCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013800 205 DLIMPNFDDSAEAEEYYKRMIDEY-P-CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~-P-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d 282 (436)
+.+...-++-+.-+.-+.+.+... - .+...+..-|.++...|++++|+....+. .+.++...--.++.++.+
T Consensus 79 a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r- 152 (299)
T KOG3081|consen 79 AEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHR- 152 (299)
T ss_pred HHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHH-
Confidence 333333344444444444433322 2 23345566678889999999999888763 334455555567777776
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ 362 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (436)
++-|.+.++++.+++.+.. +..||..+.. +..-.+.++.|.-+|+..-+..|-.+..++.
T Consensus 153 ~d~A~~~lk~mq~ided~t--LtQLA~awv~------------------la~ggek~qdAfyifeE~s~k~~~T~~llnG 212 (299)
T KOG3081|consen 153 FDLAEKELKKMQQIDEDAT--LTQLAQAWVK------------------LATGGEKIQDAFYIFEELSEKTPPTPLLLNG 212 (299)
T ss_pred HHHHHHHHHHHHccchHHH--HHHHHHHHHH------------------HhccchhhhhHHHHHHHHhcccCCChHHHcc
Confidence 9999999999998876543 3334432211 1123456899999999998877777999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH-HHHHHhhCCCChh
Q 013800 363 YAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKS-SDQFQQVAPIRQG 427 (436)
Q Consensus 363 la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~l~p~~~~ 427 (436)
.+.|...+|+ |++|...++.+|..++.+++++.++..+-..+|...++..- +.+.....|.+.-
T Consensus 213 ~Av~~l~~~~-~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 213 QAVCHLQLGR-YEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHhcC-HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 9999999999 99999999999999999999999999999999998776554 4555555676554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00012 Score=66.62 Aligned_cols=178 Identities=16% Similarity=0.120 Sum_probs=135.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HH
Q 013800 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSN---IL 304 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~---~~ 304 (436)
.+..|+.-|...+..|++++|+..|+.+....|.. ..+...++..+++.+ ++++|+...++-+++.|+++. ++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~-~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNG-EYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 35788999999999999999999999999988765 568888999988887 599999999999999998654 34
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHH
Q 013800 305 AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE-----------------IMSQYAKLV 367 (436)
Q Consensus 305 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~ 367 (436)
+..|......-+ .....+.-..+|+..|+..+...|+..- -=..+|..|
T Consensus 112 YlkgLs~~~~i~--------------~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY 177 (254)
T COG4105 112 YLKGLSYFFQID--------------DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYY 177 (254)
T ss_pred HHHHHHHhccCC--------------ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433222111 2233344456788888999999887521 123567788
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCC
Q 013800 368 WELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWETEEDEDDSKSSDQFQQVA-PIR 425 (436)
Q Consensus 368 ~~~g~d~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~l~-p~~ 425 (436)
.+.|. +-.|+.-++.+++..|+.. +++..+..+|..+|-.++|.+.- +++..+ |+.
T Consensus 178 ~kr~~-~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~-~vl~~N~p~s 237 (254)
T COG4105 178 LKRGA-YVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA-KVLGANYPDS 237 (254)
T ss_pred HHhcC-hHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH-HHHHhcCCCC
Confidence 99999 9999999999999877654 77888889999999999987654 455544 443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-05 Score=66.77 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=89.1
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQ 271 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 271 (436)
+..+...|...++.|+|.+|++.|+......|... .+.+.++.+|+..+++++|+..+++-++++|.+ ..+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 34566667777788999999999999999988654 789999999999999999999999999999886 467888
Q ss_pred HHHHHHHHcC--------------CHHHHHHHHHHHHHhCCCCHHH
Q 013800 272 YAKLVWELHR--------------DQHRALTYFERAALAAPQDSNI 303 (436)
Q Consensus 272 la~~~~~~~~--------------d~~~A~~~~~~al~~~p~~~~~ 303 (436)
.|.+++.... ...+|...|+++++..|+...+
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 8888877631 1568999999999999987654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.37 E-value=1e-05 Score=76.87 Aligned_cols=139 Identities=21% Similarity=0.309 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH-cCCHHHHHHH
Q 013800 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS-KGDLEGAEEY 345 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~g~~~~A~~~ 345 (436)
.+|..+.......+| .+.|..+|++|++..+-...+|...| .+.+. .++.+.|..+
T Consensus 2 ~v~i~~m~~~~r~~g-~~~aR~vF~~a~~~~~~~~~vy~~~A----------------------~~E~~~~~d~~~A~~I 58 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEG-IEAARKVFKRARKDKRCTYHVYVAYA----------------------LMEYYCNKDPKRARKI 58 (280)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCS-THHHHHHH----------------------HHHHHTCS-HHHHHHH
T ss_pred HHHHHHHHHHHHhCC-hHHHHHHHHHHHcCCCCCHHHHHHHH----------------------HHHHHhCCCHHHHHHH
Confidence 467888888888887 99999999999966666788888888 56445 5777779999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
|+.+++..|.+...|..+...+...++ .+.|..+|++++..-|... .+|..+..+....|+.+...++++++.++.
T Consensus 59 fe~glk~f~~~~~~~~~Y~~~l~~~~d-~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 59 FERGLKKFPSDPDFWLEYLDFLIKLND-INNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998 9999999999998877644 688999999999999999999999999998
Q ss_pred CCChhHH
Q 013800 423 PIRQGAV 429 (436)
Q Consensus 423 p~~~~a~ 429 (436)
|......
T Consensus 138 ~~~~~~~ 144 (280)
T PF05843_consen 138 PEDNSLE 144 (280)
T ss_dssp TTS-HHH
T ss_pred hhhhHHH
Confidence 8744433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.9e-05 Score=65.77 Aligned_cols=99 Identities=14% Similarity=0.141 Sum_probs=88.5
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWE 404 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~ 404 (436)
...++.|+|.+|++.|+.+....|.. ..+.+.++.+++..++ +++|+..+++-++++|.++ .+++..|.+++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~-y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGD-YEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 67778999999999999999988754 5789999999999999 9999999999999999886 678888988888
Q ss_pred CCC---------------hHHHHHHHHHHHhhCCCChhHHh
Q 013800 405 TEE---------------DEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 405 ~g~---------------~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
+.. ..+|...|++++...|+..-+..
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 876 88999999999999999876654
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00011 Score=65.57 Aligned_cols=181 Identities=17% Similarity=0.191 Sum_probs=116.9
Q ss_pred CCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 013800 211 FDDSAEAEEYYKRMIDEYP------CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQH 284 (436)
Q Consensus 211 ~g~~~~A~~~~~~al~~~P------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~ 284 (436)
.+.+++|.++|.++-.... .-..++...|.++.+.|.-++|- ..+...+.+|... +..
T Consensus 27 ~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaa--------------t~YveA~~cykk~--~~~ 90 (288)
T KOG1586|consen 27 SNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAA--------------TTYVEAANCYKKV--DPE 90 (288)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHH--------------HHHHHHHHHhhcc--ChH
Confidence 3578999888887643211 01133334444444444333333 3344445554443 599
Q ss_pred HHHHHHHHHHHhCCCCHHH------HHHHHHHHHHccCchHHHHHHHHHHHHhHHH-HcCCHHHHHHHHHHHHHhCCCC-
Q 013800 285 RALTYFERAALAAPQDSNI------LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ-SKGDLEGAEEYFSRAILANPGD- 356 (436)
Q Consensus 285 ~A~~~~~~al~~~p~~~~~------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~- 356 (436)
+|+.++++++++.-+.... +..+| .+|. .+.++++|+.+|+++-+....+
T Consensus 91 eAv~cL~~aieIyt~~Grf~~aAk~~~~ia----------------------EiyEsdl~d~ekaI~~YE~Aae~yk~ee 148 (288)
T KOG1586|consen 91 EAVNCLEKAIEIYTDMGRFTMAAKHHIEIA----------------------EIYESDLQDFEKAIAHYEQAAEYYKGEE 148 (288)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhHH----------------------HHHhhhHHHHHHHHHHHHHHHHHHcchh
Confidence 9999999998875432221 12333 3443 4478999999999987764432
Q ss_pred -----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 357 -----GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-------HVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 357 -----~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
-..+...|..-..+++ |.+|+..|++.....-++. ..++.-|.+++...+.-.+...+++..+++|.
T Consensus 149 s~ssANKC~lKvA~yaa~leq-Y~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 149 SVSSANKCLLKVAQYAAQLEQ-YSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred hhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 2345566666677888 9999999999877655544 33455677787878888888899999999999
Q ss_pred ChhHHh
Q 013800 425 RQGAVT 430 (436)
Q Consensus 425 ~~~a~~ 430 (436)
|.+...
T Consensus 228 F~dsRE 233 (288)
T KOG1586|consen 228 FTDSRE 233 (288)
T ss_pred ccccHH
Confidence 988665
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.8e-05 Score=72.64 Aligned_cols=104 Identities=19% Similarity=0.227 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQ---DSNILAAYA 308 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~---~~~~~~~la 308 (436)
.++.|.-++..|+|.+|+..|..-++..|+. +.+++.||.+++.+++ |++|...|..+++-.|+ -+++++.+|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~-y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGD-YEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhccc-chHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 6777777778888888888888888877764 5677777777777764 77777777777777665 356677777
Q ss_pred HHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013800 309 CFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 361 (436)
.+..++|+.++|...|+++++..|+...+..
T Consensus 223 ----------------------~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 223 ----------------------VSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred ----------------------HHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 6666667777777777777777776655443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.31 E-value=5e-05 Score=74.81 Aligned_cols=161 Identities=17% Similarity=0.082 Sum_probs=101.5
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------C---
Q 013800 210 NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG---------------------D--- 265 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------------------~--- 265 (436)
+..+.+.-++.-++|++++|+.+.+|..||.- ...-..+|+++|+++++.... +
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 34667888899999999999999988887752 223456777777777664211 0
Q ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH
Q 013800 266 -GESWMQYAKLVWELHRDQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA 342 (436)
Q Consensus 266 -~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A 342 (436)
..+...+|.+.+++|+ .++|++.++..++..|. +..++.++..++ ...+.|.++
T Consensus 258 ~~y~KrRLAmCarklGr-~~EAIk~~rdLlke~p~~~~l~IrenLie~L----------------------Lelq~Yad~ 314 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGR-LREAIKMFRDLLKEFPNLDNLNIRENLIEAL----------------------LELQAYADV 314 (539)
T ss_pred hhhhHHHHHHHHHHhCC-hHHHHHHHHHHHhhCCccchhhHHHHHHHHH----------------------HhcCCHHHH
Confidence 3355678888888886 89999999999988775 456788888444 445555555
Q ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHhCCCCHHHH
Q 013800 343 EEYFSRAILA-NPGDGEIMSQYAKLVWELHHD---------------HDKALCYFERAVQASPADSHVL 395 (436)
Q Consensus 343 ~~~~~~al~~-~p~~~~~~~~la~~~~~~g~d---------------~~~A~~~~~~al~~~p~~~~~~ 395 (436)
...+.+-=++ -|+.+...+.-|.+..+...| -..|.+.+.+|++.+|.-+..+
T Consensus 315 q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 315 QALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred HHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 5444443222 133333333333322221110 1346678888888887766444
|
The molecular function of this protein is uncertain. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.5e-06 Score=65.39 Aligned_cols=64 Identities=20% Similarity=0.258 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMA---DP----GDGESWMQYAKLVWELHRDQHRALTYFERAALA 296 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p----~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~ 296 (436)
+.++.++|.+|..+|++++|+.+|++++.+ .+ ....++.++|.++...++ +++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD-YEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh
Confidence 345556666666666666666666666543 11 113455566666555553 66666666666554
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.5e-06 Score=65.45 Aligned_cols=67 Identities=18% Similarity=0.290 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---C-C---CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 354 PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS---P-A---DSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 354 p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~---p-~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
|+-..++.++|.++..+|+ +++|+.+|++++++. + + -..++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGR-YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3446789999999999999 999999999999752 2 2 2367899999999999999999999999876
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.7e-05 Score=68.03 Aligned_cols=123 Identities=14% Similarity=0.157 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------------
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV---------------- 330 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------------- 330 (436)
+.+.++.++...+. |.-.+..+.++++.+ |.++.....++.+....|+.+.|..++++..+.
T Consensus 179 Vmy~~~~~llG~kE-y~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKE-YVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchh-hhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 33444445555543 666666666666655 345555555665555555555555555533222
Q ss_pred --hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 331 --LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 331 --~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
.++.-.+++..|...|.+.+..+|.++.+.++.|.|+..+|+ ..+|++.++.++++.|...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~-l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK-LKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH-HHHHHHHHHHHhccCCccc
Confidence 667778899999999999999999999999999999999999 9999999999999998743
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.5e-05 Score=62.44 Aligned_cols=96 Identities=23% Similarity=0.159 Sum_probs=83.1
Q ss_pred hhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHc
Q 013800 205 DLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD----GESWMQYAKLVWELH 280 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~ 280 (436)
|..+...|+.+.|++.|.+++.+-|+.+.+|.+.++.+.-+|+.++|++.+++++++.... -.++...|.+|...+
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4466677999999999999999999999999999999999999999999999999986543 346778898877776
Q ss_pred CCHHHHHHHHHHHHHhCCCCH
Q 013800 281 RDQHRALTYFERAALAAPQDS 301 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~ 301 (436)
+ -+.|...|+.+.++.....
T Consensus 130 ~-dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 130 N-DDAARADFEAAAQLGSKFA 149 (175)
T ss_pred c-hHHHHHhHHHHHHhCCHHH
Confidence 5 8999999999988875543
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.18 E-value=6e-06 Score=73.63 Aligned_cols=93 Identities=16% Similarity=0.025 Sum_probs=86.0
Q ss_pred HhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 013800 204 VDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQ 283 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~ 283 (436)
-|+.++....|..|+..|.++|.++|..+..|.+.+.++++..+++.+.....+++++.|+....++.+|.++....+ |
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~-~ 94 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG-Y 94 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc-c
Confidence 355666668899999999999999999999999999999999999999999999999999999999999999999987 9
Q ss_pred HHHHHHHHHHHHhC
Q 013800 284 HRALTYFERAALAA 297 (436)
Q Consensus 284 ~~A~~~~~~al~~~ 297 (436)
++|+.+++++..+.
T Consensus 95 ~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLL 108 (284)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999997664
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.9e-06 Score=72.56 Aligned_cols=90 Identities=18% Similarity=0.131 Sum_probs=85.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 410 (436)
..++...+|..|+.+|.++|.++|..+..|.+.+.+++++.+ ++.+...+++++++.|+....++.+|..+.....+++
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~-~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKH-WEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhh-hhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 566677899999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 013800 411 DSKSSDQFQQV 421 (436)
Q Consensus 411 A~~~~~~al~l 421 (436)
|+..+.+++.+
T Consensus 97 aI~~Lqra~sl 107 (284)
T KOG4642|consen 97 AIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHH
Confidence 99999999776
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.7e-05 Score=69.17 Aligned_cols=159 Identities=18% Similarity=0.043 Sum_probs=120.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHH
Q 013800 237 NYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALA-APQD---SNILAAYACFLW 312 (436)
Q Consensus 237 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~ 312 (436)
.-+.++...|++.+|-..+++.+.-.|.+..++..--.+++..|+ ...-...+++++.. +++- ..+.-.++
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~-~~~~k~ai~kIip~wn~dlp~~sYv~Gmya---- 182 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGN-QIGKKNAIEKIIPKWNADLPCYSYVHGMYA---- 182 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccc-hhhhhhHHHHhccccCCCCcHHHHHHHHHH----
Confidence 344556677888888888889999999888887777777777775 77777888888776 5554 34444455
Q ss_pred HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-
Q 013800 313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD- 391 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~- 391 (436)
..+...|-|++|.+..++++++++.+..+...++.++...|+ +.++.+.+.+.-..-...
T Consensus 183 ------------------FgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r-~Keg~eFM~~ted~Wr~s~ 243 (491)
T KOG2610|consen 183 ------------------FGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR-HKEGKEFMYKTEDDWRQSW 243 (491)
T ss_pred ------------------hhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch-hhhHHHHHHhcccchhhhh
Confidence 777788999999999999999999998888889999888888 899988887643221111
Q ss_pred ---HHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013800 392 ---SHVLAAYACFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 392 ---~~~~~~la~~~~~~g~~~~A~~~~~~al 419 (436)
..-|+..|.++++-+.++.|+++|.+-+
T Consensus 244 mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 244 MLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 1345667888888899999999887644
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00025 Score=70.09 Aligned_cols=176 Identities=11% Similarity=0.053 Sum_probs=117.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH--
Q 013800 244 KKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD-- 321 (436)
Q Consensus 244 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-- 321 (436)
+..+.++-++...+|++++|+.+.+|..+|.-.. ....+|+++|+++++.....-.. .......|..-+..
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEEeA---~Ti~Eae~l~rqAvkAgE~~lg~----s~~~~~~g~~~e~~~~ 252 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEEEA---STIVEAEELLRQAVKAGEASLGK----SQFLQHHGHFWEAWHR 252 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc---cCHHHHHHHHHHHHHHHHHhhch----hhhhhcccchhhhhhc
Confidence 4456677888899999999999999998884321 23789999999998865321110 00000001000000
Q ss_pred -----HHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCHH
Q 013800 322 -----KAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG--DGEIMSQYAKLVWELHHDHDKALCYFERAVQA-SPADSH 393 (436)
Q Consensus 322 -----~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~-~p~~~~ 393 (436)
-.+-+.--..+..+.|+.++|++.++..++..|. +..++.+|..++..++. |.++...+.+.=++ -|....
T Consensus 253 Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~-Yad~q~lL~kYdDi~lpkSAt 331 (539)
T PF04184_consen 253 RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA-YADVQALLAKYDDISLPKSAT 331 (539)
T ss_pred cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC-HHHHHHHHHHhccccCCchHH
Confidence 0000000007788899999999999999998875 46689999999999999 99999999986433 355566
Q ss_pred HHHHHHHHHHH-CCC---------------hHHHHHHHHHHHhhCCCChh
Q 013800 394 VLAAYACFLWE-TEE---------------DEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 394 ~~~~la~~~~~-~g~---------------~~~A~~~~~~al~l~p~~~~ 427 (436)
..+.-|.+..+ .++ ...|++.+++|.+.+|+.+.
T Consensus 332 i~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 332 ICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 66655554333 222 23477889999999988653
|
The molecular function of this protein is uncertain. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00029 Score=69.05 Aligned_cols=80 Identities=13% Similarity=0.099 Sum_probs=71.3
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHh---------CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDE---------YP---------CHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~P---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
..|.++|.+.++.|.|..+..+|.++++. .| ...+++++.|..|...|++-.|.++|.+++.
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 46899999999999999999999999961 12 2347899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHH
Q 013800 261 ADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~ 278 (436)
..-.+|..|.++|.+...
T Consensus 364 vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 364 VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHhcCcHHHHHHHHHHHH
Confidence 999999999999998754
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00079 Score=60.61 Aligned_cols=192 Identities=16% Similarity=0.116 Sum_probs=125.8
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH-H
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP------LLLRNYAQLLQKKGDLYRAEDYYNHATMAD-----PGDGE-S 268 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~-~ 268 (436)
|..-+..+....+|++|...+.++++-..++. .++-..|.+......+.++..+|++|..+. |+.+. +
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAma 113 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMA 113 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHH
Confidence 33444445555999999999999997554432 345566777778899999999999998863 44333 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH
Q 013800 269 WMQYAKLVWELHRDQHRALTYFERAALAAPQDSN---ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY 345 (436)
Q Consensus 269 ~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~ 345 (436)
+-.-|.+ .+.. ++++|+.+|++++.+-..+.. +.-.++.+- +++.+..++.+|-..
T Consensus 114 leKAak~-lenv-~Pd~AlqlYqralavve~~dr~~ma~el~gk~s-------------------r~lVrl~kf~Eaa~a 172 (308)
T KOG1585|consen 114 LEKAAKA-LENV-KPDDALQLYQRALAVVEEDDRDQMAFELYGKCS-------------------RVLVRLEKFTEAATA 172 (308)
T ss_pred HHHHHHH-hhcC-CHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh-------------------hHhhhhHHhhHHHHH
Confidence 3334444 3333 499999999999876543322 222222111 778888888888777
Q ss_pred HHHHHHh------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013800 346 FSRAILA------NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA----SPADSHVLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 346 ~~~al~~------~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~ 415 (436)
+.+-... .+.....+.....++....+ |..|..+++..-++ .+++..++.+|-..| ..|+.++..+++
T Consensus 173 ~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~D-yv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 173 FLKEGVAADKCDAYNSQCKAYVAAILVYLYAHD-YVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHH-HHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 7664322 23334445555555666667 99999999987765 355667777776665 677887776654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.1e-06 Score=53.84 Aligned_cols=42 Identities=26% Similarity=0.352 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 274 (436)
.++..+|.+|...|++++|++.|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456666666666666666666666666666666666666653
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.4e-06 Score=80.20 Aligned_cols=108 Identities=18% Similarity=0.057 Sum_probs=99.0
Q ss_pred hHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013800 203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d 282 (436)
..++..+..+.|+.|+..|.++|+++|+++..+.+.+.++.+.+++..|+..+.+|++++|....+|+..|.+....++
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~- 87 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE- 87 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH-
Confidence 3455667779999999999999999999999999999999999999999999999999999999999999999888876
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
+.+|...|++...+.|+++.+...+..+.
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 99999999999999999999887776543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0066 Score=58.34 Aligned_cols=184 Identities=20% Similarity=0.044 Sum_probs=94.3
Q ss_pred HhhhhhhCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHc
Q 013800 204 VDLIMPNFDDSAEAEEYYKRMIDEYPC--HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE-SWMQYAKLVWELH 280 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~ 280 (436)
-|.+..-.|+-..|.++-.++-++-.. .+.++..-++.-.-.|+++.|..-|+-.+. +|+.-. .+..|-.- .+..
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyle-Aqr~ 167 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLE-AQRL 167 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHH-HHhc
Confidence 344555556666666666655532221 223444445555666666666666654432 222111 11111101 1122
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------------hHHHHcCCHHH
Q 013800 281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------------LPIQSKGDLEG 341 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~g~~~~ 341 (436)
|+.+-|..+-+++-...|.-+-++...-...+..|+++.|+++++..... ..-.-.-+...
T Consensus 168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~ 247 (531)
T COG3898 168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS 247 (531)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH
Confidence 34666666666666666666666666666666666666666666643332 01111223445
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
|...-.+++++.|+...+-..-+..++..|+ ..++-.+++.+.+..|.
T Consensus 248 Ar~~A~~a~KL~pdlvPaav~AAralf~d~~-~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 248 ARDDALEANKLAPDLVPAAVVAARALFRDGN-LRKGSKILETAWKAEPH 295 (531)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHhccc-hhhhhhHHHHHHhcCCC
Confidence 5555555555555555555555555555555 55555555555555443
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0002 Score=71.47 Aligned_cols=96 Identities=13% Similarity=0.041 Sum_probs=84.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDG-EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDE 409 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 409 (436)
..+..+|+...|+.++.+|+...|... ....+||.++..-|- .-.|-.++.+++.+.-..+-.++.+|..+..+.+.+
T Consensus 615 lywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~-~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 615 LYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGL-HLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred ceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhh-hccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 334457899999999999999988654 357789999999998 899999999999999888889999999999999999
Q ss_pred HHHHHHHHHHhhCCCChh
Q 013800 410 DDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 410 ~A~~~~~~al~l~p~~~~ 427 (436)
.|++.+++++.+.|+...
T Consensus 694 ~a~~~~~~a~~~~~~~~~ 711 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPE 711 (886)
T ss_pred HHHHHHHHHHhcCCCChh
Confidence 999999999999988665
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00062 Score=70.58 Aligned_cols=165 Identities=18% Similarity=0.167 Sum_probs=108.7
Q ss_pred HhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 013800 204 VDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQ 283 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~ 283 (436)
.+.+...+|-.++|+.+|++.-.. -.+-.+|...|.+++|.+..+.--.+ .....|+++|..+...+ |.
T Consensus 806 vAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~-Di 874 (1416)
T KOG3617|consen 806 VAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARR-DI 874 (1416)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhc-cH
Confidence 344556667777777777776442 34556677777777777655432111 12346777776655554 58
Q ss_pred HHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCH
Q 013800 284 HRALTYFERA----------ALAAP----------QDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDL 339 (436)
Q Consensus 284 ~~A~~~~~~a----------l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~ 339 (436)
+.|+++|+++ +.-+| .+...|..+|..+...|+.+.|+..|..+-.- ++..-+|+.
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~ 954 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKT 954 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCc
Confidence 8888888774 22233 25566777887777788888887777644433 555567777
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013800 340 EGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAV 385 (436)
Q Consensus 340 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al 385 (436)
++|..+.++ ..|-.+.+.||+.|-..|+ +.+|+..|.+|-
T Consensus 955 ~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~-v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 955 DKAARIAEE-----SGDKAACYHLARMYENDGD-VVKAVKFFTRAQ 994 (1416)
T ss_pred hHHHHHHHh-----cccHHHHHHHHHHhhhhHH-HHHHHHHHHHHH
Confidence 777654433 4667788889999988888 899988887764
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.9e-05 Score=52.31 Aligned_cols=43 Identities=23% Similarity=0.206 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~ 400 (436)
+.++..+|.++...|+ +++|++.|+++++.+|+++.+|..+|.
T Consensus 1 p~~~~~la~~~~~~G~-~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQ-PDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3578889999999999 999999999999999999999988875
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0024 Score=66.38 Aligned_cols=217 Identities=19% Similarity=0.220 Sum_probs=144.7
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRM----------IDEYPC----------HPLLLRNYAQLLQKKGDLYRAEDYYNHA 258 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~a----------l~~~P~----------~~~~~~~la~~~~~~g~~~~A~~~~~~a 258 (436)
..|.+.+..+...++.+.|+++|+++ +..+|. +...|...|..+...|+.+.|+.+|..|
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 56777777888889999999999874 445553 4456777888889999999999999887
Q ss_pred HHh---------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHH
Q 013800 259 TMA---------------------DPGDGESWMQYAKLVWELHRDQHRALTYFERAALA------APQDSNILAAYACFL 311 (436)
Q Consensus 259 l~~---------------------~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~------~p~~~~~~~~la~~~ 311 (436)
-.. ...+..+.+.+|+.|...+ ++.+|+..|.+|-.. ...+ +..-.|+++.
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g-~v~~Av~FfTrAqafsnAIRlcKEn-d~~d~L~nla 1016 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDG-DVVKAVKFFTRAQAFSNAIRLCKEN-DMKDRLANLA 1016 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 442 3456778899999988887 499999998887543 2221 1112233333
Q ss_pred HHccCc--hHHHHHHHHHH---HH--hHHHHcCCHHHHHHHHHHH-----H-----HhCC-CCHHHHHHHHHHHHHhcCC
Q 013800 312 WEMEDD--GEDDKAQEEHI---QV--LPIQSKGDLEGAEEYFSRA-----I-----LANP-GDGEIMSQYAKLVWELHHD 373 (436)
Q Consensus 312 ~~~g~~--~~A~~~~~~~~---~~--~~~~~~g~~~~A~~~~~~a-----l-----~~~p-~~~~~~~~la~~~~~~g~d 373 (436)
...+.. -.|.++|++.- .. .+|.+.|.+.+|++..-+. | .++| .++..+..-+..+....+
T Consensus 1017 l~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~q- 1095 (1416)
T KOG3617|consen 1017 LMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQ- 1095 (1416)
T ss_pred hhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHH-
Confidence 333332 33444444322 11 6677777777776654321 2 1244 467777777777777777
Q ss_pred HHHHHHHHHH------HHHh----------------CCCC---------HHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013800 374 HDKALCYFER------AVQA----------------SPAD---------SHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 374 ~~~A~~~~~~------al~~----------------~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~a 418 (436)
|++|..++-. |+++ .|.. ..++-.+|.+..++|.|..|.+-|.++
T Consensus 1096 yekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1096 YEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 9988876544 4433 1211 267888999999999999998888765
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.3e-05 Score=67.10 Aligned_cols=104 Identities=21% Similarity=0.246 Sum_probs=90.8
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHH--------hCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMID--------EYPCHP----------LLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~--------~~P~~~----------~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
......|+-+++.|+|.+|...|+.|+. ..|..+ ..+.++++|+...|+|-+++++....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 5667789999999999999999999874 245443 4688999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013800 261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNI 303 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~ 303 (436)
..|.+..+++..|.+....=+ .++|...|.++++++|.-..+
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn-~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWN-EAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcC-HHHHHHHHHHHHhcChhhHHH
Confidence 999999999999999888754 899999999999999975443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00029 Score=64.04 Aligned_cols=134 Identities=18% Similarity=0.219 Sum_probs=114.0
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C--CCHHHHHHH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEY-PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD----P--GDGESWMQY 272 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p--~~~~~~~~l 272 (436)
..+.+..++.-.++|.-.+..+.+.++.+ |..+.....+|.+.++.|+.+.|..+|+++-+.+ . ....+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44556677888899999999999999998 6677888999999999999999999999665432 2 234566777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh
Q 013800 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA 352 (436)
Q Consensus 273 a~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 352 (436)
+.++.... ++..|...|.+++..+|.++.+.++.+ .++.-.|+...|++.++.++.+
T Consensus 259 a~i~lg~n-n~a~a~r~~~~i~~~D~~~~~a~NnKA----------------------LcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQN-NFAEAHRFFTEILRMDPRNAVANNNKA----------------------LCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheeccc-chHHHHHHHhhccccCCCchhhhchHH----------------------HHHHHHHHHHHHHHHHHHHhcc
Confidence 77777776 599999999999999999999999999 7777889999999999999999
Q ss_pred CCCC
Q 013800 353 NPGD 356 (436)
Q Consensus 353 ~p~~ 356 (436)
.|..
T Consensus 316 ~P~~ 319 (366)
T KOG2796|consen 316 DPRH 319 (366)
T ss_pred CCcc
Confidence 9973
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00011 Score=65.88 Aligned_cols=96 Identities=11% Similarity=0.144 Sum_probs=80.6
Q ss_pred hHHHHcCCHHHHHHHHHHHHHh--------CCC----------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILA--------NPG----------DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~--------~p~----------~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
.-+++.|+|.+|...|+.|+.. .|. ....+.|+++|+...|+ |-++++.+...|..+|.+.
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e-~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEE-YYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHH-HHHHHHHHHHHHhcCCchH
Confidence 5566677777777777777643 233 34568899999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 393 HVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 393 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
.+++..|.+....-+.++|...|.++++++|....
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 99999999999999999999999999999887544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.6e-05 Score=49.38 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=25.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 013800 221 YKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAE 252 (436)
Q Consensus 221 ~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~ 252 (436)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67778888888888888888888888877775
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0037 Score=56.04 Aligned_cols=169 Identities=12% Similarity=0.000 Sum_probs=110.6
Q ss_pred hhhhhhCCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHH
Q 013800 205 DLIMPNFDDSAEAEEYYKRMIDEY-----PC-HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE------SWMQY 272 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~-----P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l 272 (436)
|+++-...++..|-..|.++-+.. .+ -+..|...+++|.+ .+.++|+.++++++++.-+-.. .+..+
T Consensus 41 an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~i 119 (288)
T KOG1586|consen 41 ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEI 119 (288)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhH
Confidence 334444466666666666665532 11 23455555666554 4999999999999998665433 34478
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHH
Q 013800 273 AKLVWELHRDQHRALTYFERAALAAPQD-SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 273 a~~~~~~~~d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 351 (436)
|.+|...-.|+++|+.+|+++-+....+ .....+...+-.. ..-...++|.+|+..|++...
T Consensus 120 aEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA-----------------~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 120 AEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVA-----------------QYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHH
Confidence 8887766457999999999998876543 2222222211111 455577899999999999887
Q ss_pred hCCCCHH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 352 ANPGDGE-------IMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 352 ~~p~~~~-------~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
..-++.- .++.-|.|++...+ .-.+...+++..+++|...
T Consensus 183 ~s~~n~LLKys~KdyflkAgLChl~~~D-~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 183 SSLDNNLLKYSAKDYFLKAGLCHLCKAD-EVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HhccchHHHhHHHHHHHHHHHHhHhccc-HHHHHHHHHHHHhcCCccc
Confidence 7655432 33445556666566 7788888899999999865
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.82 E-value=2e-05 Score=48.90 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=16.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 013800 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKAL 378 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~ 378 (436)
|+++|+++|+++.+|+++|.+|...|+ +++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~-~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGD-YEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcC-HHhhc
Confidence 445555555555555555555555555 54443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.015 Score=58.90 Aligned_cols=98 Identities=15% Similarity=0.035 Sum_probs=77.3
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS-PADSHVLAAYACFLWETEEDE 409 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~ 409 (436)
......|+++...-.|++++--.....+.|...+......|+ .+-|...+..+.++. |..+.++...+.+-...|++.
T Consensus 305 df~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~-~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~ 383 (577)
T KOG1258|consen 305 DFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGD-VSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFD 383 (577)
T ss_pred hhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCc-hhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHH
Confidence 444467888888888888887777778888888888888888 888888888877764 566777788888888889999
Q ss_pred HHHHHHHHHHhhCCCChhHH
Q 013800 410 DDSKSSDQFQQVAPIRQGAV 429 (436)
Q Consensus 410 ~A~~~~~~al~l~p~~~~a~ 429 (436)
.|...+.++.+--|.+-.+.
T Consensus 384 ~A~~~lq~i~~e~pg~v~~~ 403 (577)
T KOG1258|consen 384 DAKVILQRIESEYPGLVEVV 403 (577)
T ss_pred HHHHHHHHHHhhCCchhhhH
Confidence 99999998887667765543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0023 Score=62.34 Aligned_cols=181 Identities=13% Similarity=0.060 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHH-HHhCCCCHHH
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMA----DPGDGESWMQYAKLVWE---LHRDQHRALTYFERA-ALAAPQDSNI 303 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~~~d~~~A~~~~~~a-l~~~p~~~~~ 303 (436)
+++..++-..|....+|+.-+...+..-.+ -++.+.+...+|.++.. .| |.++|+..+..+ ....+.+++.
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~g-dre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPG-DREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCC-CHHHHHHHHHHHHhccCCCChHH
Confidence 456677777888889999888888877666 55667777888877776 44 689999999884 4455678888
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013800 304 LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 304 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~ 383 (436)
+-.+|.++.+.-.. ..+......++|+.+|.++.+++|+ ...-.|++.++...|.++....+.-+-
T Consensus 220 ~gL~GRIyKD~~~~-------------s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i 285 (374)
T PF13281_consen 220 LGLLGRIYKDLFLE-------------SNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKI 285 (374)
T ss_pred HHHHHHHHHHHHHH-------------cCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHH
Confidence 88888666542000 0011233589999999999999965 455566777777777644333222222
Q ss_pred HHHh-----------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 384 AVQA-----------SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 384 al~~-----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
.+.+ .-.+-..+..++.+..-.|++++|++.+++++.+.|....
T Consensus 286 ~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 286 GVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 2111 1123456677788888999999999999999998755433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0014 Score=60.98 Aligned_cols=53 Identities=19% Similarity=0.127 Sum_probs=41.2
Q ss_pred hhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013800 206 LIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA 258 (436)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a 258 (436)
.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34455588888888888888888888888888888888888888887776654
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.6e-05 Score=75.47 Aligned_cols=107 Identities=17% Similarity=0.089 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 013800 237 NYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMED 316 (436)
Q Consensus 237 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 316 (436)
..+.-++..+.++.|+..|.+||+++|+.+..+.+.+..+.+.+ ++..|+..+.+|++++|....+++..|
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e-~~~~Al~Da~kaie~dP~~~K~Y~rrg-------- 79 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVE-SFGGALHDALKAIELDPTYIKAYVRRG-------- 79 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeec-hhhhHHHHHHhhhhcCchhhheeeecc--------
Confidence 33444444455555555555555555555555554444444443 255555555555555554444444444
Q ss_pred chHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 317 DGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL 366 (436)
Q Consensus 317 ~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (436)
.+....+++.+|...|+....+.|+++.+...+..|
T Consensus 80 --------------~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 80 --------------TAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred --------------HHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 444444555555555555555555544444443333
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0097 Score=54.31 Aligned_cols=194 Identities=17% Similarity=0.198 Sum_probs=148.3
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQH- 284 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~- 284 (436)
++.+...-..|+.+-..+|.++|.+..+|...-.++.. ..+..+-++++...++-+|++-.+|...-.+....+ ++.
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~-d~s~ 130 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLG-DPSF 130 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc-Cccc
Confidence 44444667899999999999999999999888887775 456788899999999999999999999887776666 587
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------hHH---HHcC-----CHHHHHHHH
Q 013800 285 RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----------LPI---QSKG-----DLEGAEEYF 346 (436)
Q Consensus 285 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------~~~---~~~g-----~~~~A~~~~ 346 (436)
.-++..+.++..+..+-.+|...-.++...+.++.-+....+.+.. +.+ ...| ..+.-+.+.
T Consensus 131 rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt 210 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYT 210 (318)
T ss_pred chHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHH
Confidence 8899999999999999999999888888889999888888887776 000 0011 234556788
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHH-hc--CCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHH
Q 013800 347 SRAILANPGDGEIMSQYAKLVWE-LH--HDHDKALCYFERAV-QASPADSHVLAAYACFL 402 (436)
Q Consensus 347 ~~al~~~p~~~~~~~~la~~~~~-~g--~d~~~A~~~~~~al-~~~p~~~~~~~~la~~~ 402 (436)
.+.|.+.|++..+|+.|.-++.. .| . +.+-.......+ +..-..+..+..+..+|
T Consensus 211 ~~~I~~vP~NeSaWnYL~G~l~~d~gl~s-~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 211 KDKILLVPNNESAWNYLKGLLELDSGLSS-DSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred HHHHHhCCCCccHHHHHHHHHHhccCCcC-CchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 88999999999999999988876 33 1 234444444444 33344566666666555
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0028 Score=57.16 Aligned_cols=171 Identities=15% Similarity=0.150 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG------ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
..|..-+.+|...+++++|...+.+|++...++. ..+-..+.+..++.. +.++..+|++|..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~k-lsEvvdl~eKAs~----------- 99 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSK-LSEVVDLYEKASE----------- 99 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHH-----------
Confidence 4566667788889999999999999997655442 233444545455554 7788888887764
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCY 380 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~~A~~~ 380 (436)
.|.+.|..+.|...++++-+ ..+..+.++|+.+|++++.+-..+ .+.+...++++.+... +.+|-..
T Consensus 100 ---lY~E~GspdtAAmaleKAak---~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k-f~Eaa~a 172 (308)
T KOG1585|consen 100 ---LYVECGSPDTAAMALEKAAK---ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK-FTEAATA 172 (308)
T ss_pred ---HHHHhCCcchHHHHHHHHHH---HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH-hhHHHHH
Confidence 45555666666655554432 335678999999999998874432 3556677888888888 9998888
Q ss_pred HHHHHH----h--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 381 FERAVQ----A--SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 381 ~~~al~----~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
+.+-.. . .++....+.....+++...++..|..+|+..-+++
T Consensus 173 ~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 173 FLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred HHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 877432 2 23333445555566666779999999998877664
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00024 Score=66.49 Aligned_cols=101 Identities=14% Similarity=0.057 Sum_probs=88.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPG----DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE 406 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 406 (436)
.-|++.++|..|+..|.++|+..-. +...|.|.|.+.+.+|+ |..|+..+.+++.++|.+..+++.=|.+++.+.
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~N-yRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGN-YRSALNDCSAALKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence 7788899999999999999998543 35678999999999999 999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCChhHHhhh
Q 013800 407 EDEDDSKSSDQFQQVAPIRQGAVTTA 432 (436)
Q Consensus 407 ~~~~A~~~~~~al~l~p~~~~a~~~a 432 (436)
++++|+...+..+.++..-..+.++.
T Consensus 168 ~~~~a~nw~ee~~~~d~e~K~~~~l~ 193 (390)
T KOG0551|consen 168 RFAEAVNWCEEGLQIDDEAKKAIELR 193 (390)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 99999999988888766555555443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00079 Score=63.26 Aligned_cols=143 Identities=17% Similarity=0.053 Sum_probs=117.8
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHcCC
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-DPGD---GESWMQYAKLVWELHRD 282 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~~~d 282 (436)
++...|++.+|-..+++.++..|.+..++..--.+++..|+.+.-...+++++-. +++. ..+.-.++..+.+.|-
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~- 190 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI- 190 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc-
Confidence 3344589999999999999999999988888888999999999999999999877 6665 4555667777778875
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------------hHHHHcCCHHHHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----------------LPIQSKGDLEGAEEYF 346 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------------~~~~~~g~~~~A~~~~ 346 (436)
|++|++.-++++++++.+.-+...++.++...++..++.+...+.-.. .++...+.|+.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999999999999999999999999998888888888777632221 5666778888888888
Q ss_pred HHHH
Q 013800 347 SRAI 350 (436)
Q Consensus 347 ~~al 350 (436)
.+-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 8754
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0049 Score=62.86 Aligned_cols=163 Identities=16% Similarity=0.057 Sum_probs=119.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHH------HHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 237 NYAQLLQKKGDLYRAEDYYNHATMADPGD-GES------WMQYAKLVWE---LHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 237 ~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~------~~~la~~~~~---~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
.+-.+.--.|+-+.+++.+.++.+...-. +.+ |+.....+.. .+.+.+.|.++++...+..|+..-.++.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~ 272 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF 272 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 33334445688999999999887732211 111 1111111111 1345788999999999999999999999
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG----DGEIMSQYAKLVWELHHDHDKALCYFE 382 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~d~~~A~~~~~ 382 (436)
.| +++...|+.++|++.|++++..... ..-.++.+++++..+++ |++|..++.
T Consensus 273 ~g----------------------R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~-w~~A~~~f~ 329 (468)
T PF10300_consen 273 EG----------------------RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD-WEEAAEYFL 329 (468)
T ss_pred HH----------------------HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch-HHHHHHHHH
Confidence 99 8888899999999999988853322 23467889999999999 999999999
Q ss_pred HHHHhCCCCH-HHHHHHHHHHHHCCCh-------HHHHHHHHHHHhhC
Q 013800 383 RAVQASPADS-HVLAAYACFLWETEED-------EDDSKSSDQFQQVA 422 (436)
Q Consensus 383 ~al~~~p~~~-~~~~~la~~~~~~g~~-------~~A~~~~~~al~l~ 422 (436)
+.++.+.-.. ...+..|.++...|+. ++|.+.++++-.+.
T Consensus 330 ~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 330 RLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 9998766533 4456668889999999 88888888776654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.009 Score=58.27 Aligned_cols=179 Identities=15% Similarity=0.067 Sum_probs=121.8
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHH-HhCCCCHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDE----YPCHPLLLRNYAQLLQK---KGDLYRAEDYYNHAT-MADPGDGESWM 270 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~P~~~~~~~~la~~~~~---~g~~~~A~~~~~~al-~~~p~~~~~~~ 270 (436)
+...++=..|....+|+.-+.+.+..-.+ -++...+.+.+|.++.+ .|+.++|+..+..++ ...+.+++.+-
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 44555556677779999999998887766 45667888899999998 999999999999954 45667899999
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--hHHHHcCCHH
Q 013800 271 QYAKLVWELH--------RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--LPIQSKGDLE 340 (436)
Q Consensus 271 ~la~~~~~~~--------~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~g~~~ 340 (436)
.+|.+|-..- ...++|+..|.++.+++|+ ...-.|++.++...|........+++..-. ..+.+.|.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~-- 298 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS-- 298 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc--
Confidence 9999875431 1267999999999999964 344456665555555432222211111100 11111111
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013800 341 GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 341 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~ 391 (436)
.-.-.+...+-.++.+..-.|+ +++|++++++++.+.|..
T Consensus 299 ----------~~~~~dYWd~ATl~Ea~vL~~d-~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 299 ----------LEKMQDYWDVATLLEASVLAGD-YEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ----------ccccccHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhcCCcc
Confidence 1112344555667777788888 999999999999998764
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0044 Score=60.03 Aligned_cols=149 Identities=9% Similarity=0.096 Sum_probs=110.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013800 219 EYYKRMIDEYPCHPLLLRNYAQLLQKKGD------------LYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 219 ~~~~~al~~~P~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
.-|++.+..+|.+..+|..+....-..-. .+.-+.+|++|++.+|++...+..+-.+..+.. +.++.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~-~~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW-DSEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHH
Confidence 45788999999999999999887765432 456788999999999999999988888877776 58888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC-------------
Q 013800 287 LTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN------------- 353 (436)
Q Consensus 287 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------------- 353 (436)
.+.+++++..+|++...|..+....... ...-.+......|.++|..-
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q~~-------------------~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~ 145 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQSN-------------------FASFTVSDVRDVYEKCLRALSRRRSGRMTSHPD 145 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHH-------------------hccCcHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 9999999999999999998777544331 11223333444444433320
Q ss_pred -----CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013800 354 -----PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 354 -----p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~ 388 (436)
..-..++..+...+.+.|- .+.|+..++-.++.+
T Consensus 146 ~~~~e~~~l~v~~r~~~fl~~aG~-~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 146 LPELEEFMLYVFLRLCRFLRQAGY-TERAVALWQALLEFN 184 (321)
T ss_pred hhhHHHHHHHHHHHHHHHHHHCCc-hHHHHHHHHHHHHHH
Confidence 0113456677777888898 999999999998876
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.014 Score=58.28 Aligned_cols=206 Identities=14% Similarity=0.128 Sum_probs=156.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHc-
Q 013800 217 AEEYYKRMIDEYPCHPLLLRNYAQLLQKKGD--------------LYRAEDYYNHATMADP-GDGESWMQYAKLVWELH- 280 (436)
Q Consensus 217 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~- 280 (436)
-.-.|++++..-+-++++|+..+..+...++ .+++...|++++...- .+...++.++..-....
T Consensus 264 v~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~ 343 (656)
T KOG1914|consen 264 VMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYD 343 (656)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcc
Confidence 3445778888888888999888877776666 7888999999887533 34444455543221111
Q ss_pred -CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHHcCCHHHHHHH
Q 013800 281 -RDQHRALTYFERAALAAPQD-SNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQSKGDLEGAEEY 345 (436)
Q Consensus 281 -~d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~g~~~~A~~~ 345 (436)
..++.-..++++++.+...+ .-++.++.++..+......|+.++.++-+. .-|...++..-|...
T Consensus 344 ~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrI 423 (656)
T KOG1914|consen 344 DNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRI 423 (656)
T ss_pred cchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHH
Confidence 01566677888888765443 445677778888888888888888766554 556678999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA--SPA-DSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~--~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
|+-.++..++.+..-+.....+..+++ -..|..+|++++.. .++ ...+|..+-......|+....+++-++-....
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNd-d~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLND-DNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCc-chhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999 69999999999987 443 34788888999999999999888887766665
Q ss_pred C
Q 013800 423 P 423 (436)
Q Consensus 423 p 423 (436)
|
T Consensus 503 ~ 503 (656)
T KOG1914|consen 503 P 503 (656)
T ss_pred c
Confidence 5
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0016 Score=68.32 Aligned_cols=133 Identities=14% Similarity=0.040 Sum_probs=109.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH
Q 013800 243 QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK 322 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 322 (436)
...+++.+|+....+.++..|+...+...-|.++.++|+ .++|..+++..-...+++...+..+-
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk-~~ea~~~Le~~~~~~~~D~~tLq~l~-------------- 84 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGK-GDEALKLLEALYGLKGTDDLTLQFLQ-------------- 84 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcC-chhHHHHHhhhccCCCCchHHHHHHH--------------
Confidence 356788999999999999999999999999999999987 99999888888777888877777777
Q ss_pred HHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 323 AQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 323 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~ 400 (436)
.+|.+++++++|..+|++++..+|. .+.+..+=.+|.+.+. |.+-.+.--+..+..|.++...+....
T Consensus 85 --------~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~-yk~qQkaa~~LyK~~pk~~yyfWsV~S 152 (932)
T KOG2053|consen 85 --------NVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKS-YKKQQKAALQLYKNFPKRAYYFWSVIS 152 (932)
T ss_pred --------HHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCcccchHHHHHH
Confidence 8889999999999999999999999 7888888888888777 766665555556677877755444433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0044 Score=57.68 Aligned_cols=162 Identities=14% Similarity=0.056 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS-NILAAYACFL 311 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~-~~~~~la~~~ 311 (436)
+.-+..+.-....|++.+|...|..++...|++..+...++.+|...+. .+.|...+...-....+.. ..+....
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~-~e~A~~iL~~lP~~~~~~~~~~l~a~i--- 210 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGD-VEAAQAILAALPLQAQDKAAHGLQAQI--- 210 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCC-hHHHHHHHHhCcccchhhHHHHHHHHH---
Confidence 4456667777889999999999999999999999999999999999975 8888777665322222111 1111111
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-
Q 013800 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA- 390 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~- 390 (436)
.++.+.....+ ...+++.+..+|+|.++.+.+|..+...|+ +++|.+.+-..+..+-.
T Consensus 211 -------------------~ll~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~-~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 211 -------------------ELLEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGR-NEAALEHLLALLRRDRGF 269 (304)
T ss_pred -------------------HHHHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcccc
Confidence 22222222222 234566778899999999999999999999 99999999999987644
Q ss_pred -CHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013800 391 -DSHVLAAYACFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 391 -~~~~~~~la~~~~~~g~~~~A~~~~~~al 419 (436)
+..+...+-.++...|.-+.+...|++-+
T Consensus 270 ~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 270 EDGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred cCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 56788888888888887666666666543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.015 Score=60.77 Aligned_cols=242 Identities=17% Similarity=0.093 Sum_probs=163.5
Q ss_pred CCCChHHHHHhhcC----CCCCCChhhhhhHhhhhhhCC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--
Q 013800 178 RPVSPPMYLAMGLG----ISVPGFDDAGEVVDLIMPNFD-----DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG-- 246 (436)
Q Consensus 178 ~p~~a~~~~~~~~~----~~~~~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g-- 246 (436)
++..+..|+.++.. -...+.+.+...+|.+|.+.. ++..|+.+|.++.+.. ++.+.+.+|.++..-.
T Consensus 264 d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~ 341 (552)
T KOG1550|consen 264 DLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKE 341 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCcc
Confidence 55566777777754 111134456778888887743 6788999999998875 5667788888888655
Q ss_pred -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCchHHH
Q 013800 247 -DLYRAEDYYNHATMADPGDGESWMQYAKLVWEL---HRDQHRALTYFERAALAAPQDSNILAAYACFLWEM-EDDGEDD 321 (436)
Q Consensus 247 -~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~ 321 (436)
++..|.++|..|... .+..+.+.++.+|..- .++...|..+|+++.+.. ++.+...++.++... +..+.+.
T Consensus 342 ~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~ 417 (552)
T KOG1550|consen 342 RDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTAL 417 (552)
T ss_pred ccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHH
Confidence 678999999988654 5677888888776542 246899999999999988 444444444333222 5555555
Q ss_pred HHHHHHHHH---------hHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCCHHHHH
Q 013800 322 KAQEEHIQV---------LPIQSK-----------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL---HHDHDKAL 378 (436)
Q Consensus 322 ~~~~~~~~~---------~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~d~~~A~ 378 (436)
..+...... ..+... .+...+...+.++.. ..+..+...+|.+|+.- ++|+..|.
T Consensus 418 ~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~ 495 (552)
T KOG1550|consen 418 ALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAA 495 (552)
T ss_pred HHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHH
Confidence 444322221 111111 244555555555543 45678888888888765 56799999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHC-C--ChHHHHHHHHHHHhhCCCChhHHh
Q 013800 379 CYFERAVQASPADSHVLAAYACFLWET-E--EDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 379 ~~~~~al~~~p~~~~~~~~la~~~~~~-g--~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
..|.++-... ....+++|..+..- | ....|.++|.++.+..........
T Consensus 496 ~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~~~~~~ 547 (552)
T KOG1550|consen 496 AQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRAYLPVK 547 (552)
T ss_pred HHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchhhhHHH
Confidence 9999998877 78899999887642 1 257899999998887766554433
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.03 Score=53.36 Aligned_cols=191 Identities=14% Similarity=0.128 Sum_probs=138.2
Q ss_pred hhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---c
Q 013800 208 MPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL---H 280 (436)
Q Consensus 208 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~ 280 (436)
....+++..|...+.++.... +......++.+|.. ..+..+|..+|. ......++.+.+.+|.+|..- .
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccccHHHHHHHHHHhhhcC--ChHHHHHHHHHHHhccCccccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcc
Confidence 345588999999999888733 33677888888874 557889999999 445667888999999888762 3
Q ss_pred CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013800 281 RDQHRALTYFERAALAAPQD-SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEI 359 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 359 (436)
+|+.+|..+|+++.+..-.. ..+.+.++.++..-. . ......+...|...|.++-... ++.+
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~--------------~~~~~~~~~~A~~~~~~aa~~~--~~~a 189 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-Q--------------ALAVAYDDKKALYLYRKAAELG--NPDA 189 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-h--------------hhcccHHHHhHHHHHHHHHHhc--CHHH
Confidence 37999999999999886544 344667774443321 0 0001113357899999987766 7889
Q ss_pred HHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---------------ChHHHHHHHHHHHhh
Q 013800 360 MSQYAKLVWEL---HHDHDKALCYFERAVQASPADSHVLAAYACFLWETE---------------EDEDDSKSSDQFQQV 421 (436)
Q Consensus 360 ~~~la~~~~~~---g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~l 421 (436)
...+|.+|..- ..|+.+|..+|.++-+... ...++.++ ++...| +...|...+.++...
T Consensus 190 ~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 190 QLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 99999887542 2348999999999998876 78888888 777666 667777777776665
Q ss_pred C
Q 013800 422 A 422 (436)
Q Consensus 422 ~ 422 (436)
.
T Consensus 267 ~ 267 (292)
T COG0790 267 G 267 (292)
T ss_pred C
Confidence 4
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00012 Score=45.19 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG 264 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 264 (436)
.+|+++|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555553
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00019 Score=44.25 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG 264 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 264 (436)
.+++.+|.++..+|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00017 Score=44.56 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
.+|+++|.++..+|+ +++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGD-YEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCC-chHHHHHHHHHHHHCcC
Confidence 456666666666666 66666666666666665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00055 Score=64.19 Aligned_cols=102 Identities=17% Similarity=0.099 Sum_probs=90.1
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH----PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYA 273 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 273 (436)
+..+..-|+-+++..+|..|+..|.+.|+..-.+ +..|.+.|-+.+..|+|..|+....+++.++|.+..+++.=|
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 3567778999999999999999999999976443 367889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 274 KLVWELHRDQHRALTYFERAALAAPQD 300 (436)
Q Consensus 274 ~~~~~~~~d~~~A~~~~~~al~~~p~~ 300 (436)
.|++.+.+ +++|..+++..+.++.+.
T Consensus 161 kc~~eLe~-~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 161 KCLLELER-FAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHHH-HHHHHHHHhhhhhhhHHH
Confidence 99999987 999999999988776543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00028 Score=43.45 Aligned_cols=33 Identities=24% Similarity=0.478 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013800 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~ 391 (436)
.+|+.+|.+++.+|+ +++|++.|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~-~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGN-YEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHCcCC
Confidence 456666666666666 666666666666666653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0042 Score=56.63 Aligned_cols=176 Identities=13% Similarity=0.163 Sum_probs=111.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFE 291 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~ 291 (436)
.+|.++..+|+..+..+... ..|+.....+|.++|.+-.+|.-.-.++..++.+..+-+.++.
T Consensus 40 e~fr~~m~YfRAI~~~~E~S-----------------~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~ 102 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEKS-----------------PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLD 102 (318)
T ss_pred hhHHHHHHHHHHHHhccccC-----------------HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 67888888888877776544 4677788889999999999999988899998888999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCch-HHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 292 RAALAAPQDSNILAAYACFLWEMEDDG-EDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 292 ~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
..++-+|.+-.+|...-.+....|+.. +-+......+.. ++...-+.|+.-+.+..+.|+.+-.+-.
T Consensus 103 eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNS 182 (318)
T KOG0530|consen 103 EIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNS 182 (318)
T ss_pred HHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccc
Confidence 999999999999998885555555443 333333332222 3444444455555555555554444444
Q ss_pred HHHHHHHHHHHh-cC-C---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 359 IMSQYAKLVWEL-HH-D---HDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 359 ~~~~la~~~~~~-g~-d---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
+|+..-.+.... |- + .+.-+.+..+.+.+.|++..+|..|.-++..
T Consensus 183 AWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 183 AWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred hhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 444333222221 11 0 1223334444455555555555555555443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0049 Score=52.21 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHH
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFS 347 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~ 347 (436)
+...++..+...+ ++++|+..+++++..+|.+..++..+. .++...|+..+|+..|+
T Consensus 64 ~~~~l~~~~~~~~-~~~~a~~~~~~~l~~dP~~E~~~~~lm----------------------~~~~~~g~~~~A~~~Y~ 120 (146)
T PF03704_consen 64 ALERLAEALLEAG-DYEEALRLLQRALALDPYDEEAYRLLM----------------------RALAAQGRRAEALRVYE 120 (146)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-HHHHHHHH----------------------HHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCCCHHHHHHHH----------------------HHHHHCcCHHHHHHHHH
Confidence 4455666666665 488999999999999998888888888 55666666666666665
Q ss_pred HHH
Q 013800 348 RAI 350 (436)
Q Consensus 348 ~al 350 (436)
+..
T Consensus 121 ~~~ 123 (146)
T PF03704_consen 121 RYR 123 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.1 Score=49.40 Aligned_cols=209 Identities=13% Similarity=0.061 Sum_probs=114.6
Q ss_pred hCCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CCCC----------H
Q 013800 210 NFDDSAEAEEYYKRMIDEY----PCH----PLLLRNYAQLLQKKG-DLYRAEDYYNHATMA----DPGD----------G 266 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~----P~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~----~p~~----------~ 266 (436)
+.|+++.|..++.++-... |+. ...+++.|......+ ++++|..++++++++ .... .
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4577777777777766543 222 245666677777777 777777777777766 1111 2
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--------------
Q 013800 267 ESWMQYAKLVWELHR--DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------- 330 (436)
Q Consensus 267 ~~~~~la~~~~~~~~--d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------- 330 (436)
.++..++.++...+. .+++|...++.+-.-.|+.+..+...-.++...++.+.+.+.+.+.+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 345566666655432 1344555555555556776666655555555566666666666666554
Q ss_pred hHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH---HHHhc-CCHHHH--HHHHHHHHH----h--CCCCH----
Q 013800 331 LPIQSKGDLEGAEEYFSRAILA--NPGDGEIMSQYAKL---VWELH-HDHDKA--LCYFERAVQ----A--SPADS---- 392 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~---~~~~g-~d~~~A--~~~~~~al~----~--~p~~~---- 392 (436)
.-.........|..++...+.. .|.... |.....+ +...+ .+.... ++.+...+. . .|-..
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 1011223345566666666543 233221 3222222 22211 111122 333322222 1 12222
Q ss_pred ---HHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013800 393 ---HVLAAYACFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 393 ---~~~~~la~~~~~~g~~~~A~~~~~~al 419 (436)
..+++.|...++.++|++|...|+-++
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 456778888999999999999999776
|
It is also involved in sporulation []. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0016 Score=63.98 Aligned_cols=145 Identities=12% Similarity=0.048 Sum_probs=108.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHH
Q 013800 236 RNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERA-ALAAPQ--------DSNILAA 306 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~a-l~~~p~--------~~~~~~~ 306 (436)
......|..+.+...+..-.+.++.+..+.+.++...+..++..|+ +.+|.+.+... +...|. .-..|++
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn-~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NN 288 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGN-HPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNN 288 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcc-hHHHHHHHHhcccccccCccccchhhhheeecC
Confidence 3344455666666666666677777777777777777777777764 88887766543 222232 2234567
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh---------C---------CCCHHHHHHHHHHHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA---------N---------PGDGEIMSQYAKLVW 368 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---------~---------p~~~~~~~~la~~~~ 368 (436)
+| -++++.|.|.-+..+|.+|++. . ....+++++.|..+.
T Consensus 289 lG----------------------cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~L 346 (696)
T KOG2471|consen 289 LG----------------------CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYL 346 (696)
T ss_pred cc----------------------eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHH
Confidence 77 7888889999999999999861 1 134678999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 369 ELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 369 ~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
..|+ .-.|.++|.+++.....++..|..+|.+.+.
T Consensus 347 h~gr-Pl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 347 HSGR-PLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcCC-cHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 9999 9999999999999999999999999988553
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.04 Score=56.01 Aligned_cols=122 Identities=10% Similarity=0.010 Sum_probs=98.1
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD-PGDGESWMQYAKLVW 277 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 277 (436)
..|...-......|+++...-.|++++---....+.|..++......|+.+-|...+.++.+.. |..+.+....+.+--
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e 377 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE 377 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence 4566666677888999999999999998887888999999999999999999999999999875 556666666665544
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013800 278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
.. ++++.|...+++...-.|+...+-...+.+....|+.+.+.
T Consensus 378 ~~-~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 378 SN-GNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred hh-ccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 44 56999999999999988998888888885555555444443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.023 Score=55.06 Aligned_cols=147 Identities=20% Similarity=0.251 Sum_probs=115.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013800 253 DYYNHATMADPGDGESWMQYAKLVWELHR-----------DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 253 ~~~~~al~~~p~~~~~~~~la~~~~~~~~-----------d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
.-|++.+..+|.+...|..+....-.... -.+.-+.+|++|++.+|++...+..+-
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l------------- 72 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYL------------- 72 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH-------------
Confidence 45788899999999999999876544321 035678899999999999999998888
Q ss_pred HHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhCC----C----
Q 013800 322 KAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE---LHHDHDKALCYFERAVQASP----A---- 390 (436)
Q Consensus 322 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~d~~~A~~~~~~al~~~p----~---- 390 (436)
.+..+.-+.++..+.+++++..+|++..+|..+-..... .-. +......|.+++..-. .
T Consensus 73 ---------~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~-v~~~~~~y~~~l~~L~~~~~~~~~~ 142 (321)
T PF08424_consen 73 ---------EEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFT-VSDVRDVYEKCLRALSRRRSGRMTS 142 (321)
T ss_pred ---------HHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHhhcccccc
Confidence 666777888899999999999999999988766555443 123 6677777877775311 0
Q ss_pred ----------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 391 ----------DSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 391 ----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
...++..+..++.+.|-.+.|+..++-.++++
T Consensus 143 ~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 143 HPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 11566778888999999999999999999986
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.018 Score=58.79 Aligned_cols=161 Identities=16% Similarity=0.066 Sum_probs=114.3
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCC-HHH-----HHHHHH-HHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCH-PLL-----LRNYAQ-LLQ----KKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~-~~~-----~~~la~-~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
+..=.||-+.+++.+.++.+..-=. +-+ .+.... .+. .....+.|.+.+....+..|+....++..|++
T Consensus 197 ~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~ 276 (468)
T PF10300_consen 197 FVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRL 276 (468)
T ss_pred hcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3444589999999999988732111 111 111111 111 24567889999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
+...++ .++|++.|++++.....-.... ..++++.+ +++.-+.+|++|..+|.+.++.+.-
T Consensus 277 ~~~~g~-~~~Ai~~~~~a~~~q~~~~Ql~---~l~~~El~---------------w~~~~~~~w~~A~~~f~~L~~~s~W 337 (468)
T PF10300_consen 277 ERLKGN-LEEAIESFERAIESQSEWKQLH---HLCYFELA---------------WCHMFQHDWEEAAEYFLRLLKESKW 337 (468)
T ss_pred HHHhcC-HHHHHHHHHHhccchhhHHhHH---HHHHHHHH---------------HHHHHHchHHHHHHHHHHHHhcccc
Confidence 888875 9999999999985433322211 12233333 8899999999999999999987654
Q ss_pred C-HHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHh
Q 013800 356 D-GEIMSQYAKLVWELHHDH-------DKALCYFERAVQA 387 (436)
Q Consensus 356 ~-~~~~~~la~~~~~~g~d~-------~~A~~~~~~al~~ 387 (436)
. .-..+..|.++...++ . ++|.++|.++-..
T Consensus 338 Ska~Y~Y~~a~c~~~l~~-~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 338 SKAFYAYLAAACLLMLGR-EEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHHHHHhhcc-chhhhhhHHHHHHHHHHHHHH
Confidence 3 4455667778888888 7 8888888887544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0083 Score=50.80 Aligned_cols=88 Identities=18% Similarity=0.225 Sum_probs=67.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC----------------------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 333 IQSKGDLEGAEEYFSRAILANPG----------------------DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~----------------------~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
....++.+.++..+++++.+... ...++..++..+...|+ +++|+..+++++..+|.
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~l~~dP~ 94 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGD-YEEALRLLQRALALDPY 94 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhcCCC
Confidence 34556777777777777766321 12456677777888999 99999999999999999
Q ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 391 DSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 391 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
+..++..+..+|...|+..+|++.|++....
T Consensus 95 ~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 95 DEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.086 Score=50.18 Aligned_cols=154 Identities=16% Similarity=0.181 Sum_probs=111.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH----cCC
Q 013800 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYRAEDYYNHATMADPGD-GESWMQYAKLVWEL----HRD 282 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~----~~d 282 (436)
.+..+|..+|+.+.+ ..++.+.+.+|.+|.. ..++.+|..+|.++.+..-.. ....+.++.++..- +-.
T Consensus 91 ~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 91 RDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred ccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 558899999995544 4577888999999987 559999999999999886554 45577777776552 222
Q ss_pred H--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 283 Q--HRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIM 360 (436)
Q Consensus 283 ~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (436)
+ ..|+..|.++.... ++.+.+.+|.++..- .-...++.+|..+|.++-+... ...+
T Consensus 169 ~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G------------------~Gv~~d~~~A~~wy~~Aa~~g~--~~a~ 226 (292)
T COG0790 169 YDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG------------------LGVPRDLKKAFRWYKKAAEQGD--GAAC 226 (292)
T ss_pred HHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC------------------CCCCcCHHHHHHHHHHHHHCCC--HHHH
Confidence 3 37999999988876 778888888433221 1124589999999999998876 8888
Q ss_pred HHHHHHHHHhcC--------------CHHHHHHHHHHHHHhCCC
Q 013800 361 SQYAKLVWELHH--------------DHDKALCYFERAVQASPA 390 (436)
Q Consensus 361 ~~la~~~~~~g~--------------d~~~A~~~~~~al~~~p~ 390 (436)
+.++ +++..|. +...|...+.++....+.
T Consensus 227 ~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 227 YNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 8888 6666552 256666666666555544
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.014 Score=57.38 Aligned_cols=172 Identities=12% Similarity=0.105 Sum_probs=108.1
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHh---CC
Q 013800 223 RMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYF-ERAALA---AP 298 (436)
Q Consensus 223 ~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~-~~al~~---~p 298 (436)
..+..+|-+.+.+..++.++..+|+.+.|.+.+++|+-.-.. ++... +....... .-..++ .+
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~----------~~~~~---F~~~~~~~~~g~~rL~~~~~ 97 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFER----------AFHPS---FSPFRSNLTSGNCRLDYRRP 97 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----------HHHHH---hhhhhcccccCccccCCccc
Confidence 345678888999999999999999999999999888643111 10000 00000000 000111 13
Q ss_pred CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCHHHH
Q 013800 299 QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG-DGEIMSQYAKLVWELHHDHDKA 377 (436)
Q Consensus 299 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~d~~~A 377 (436)
.|...+..+-... ..+.+.|-+..|.++.+-.+.++|. |+-........|.-..++|+=-
T Consensus 98 eNR~fflal~r~i-------------------~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~L 158 (360)
T PF04910_consen 98 ENRQFFLALFRYI-------------------QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWL 158 (360)
T ss_pred cchHHHHHHHHHH-------------------HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHH
Confidence 3444333333222 6677899999999999999999998 7765555554444333337777
Q ss_pred HHHHHHHHHhCC-C----CHHHHHHHHHHHHHCCCh---------------HHHHHHHHHHHhhCCCCh
Q 013800 378 LCYFERAVQASP-A----DSHVLAAYACFLWETEED---------------EDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 378 ~~~~~~al~~~p-~----~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~l~p~~~ 426 (436)
++.++....... . -+...+..+.+++.+++. ++|...+.+|+...|..-
T Consensus 159 i~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 159 IDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred HHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 777776554211 1 234667778888888888 889999999988776543
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00025 Score=66.75 Aligned_cols=92 Identities=15% Similarity=0.028 Sum_probs=52.5
Q ss_pred hhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 013800 205 DLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQH 284 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~ 284 (436)
+.-.+..|.+++|++.|..+|.++|..+.++...+.+++.+++...|+..+..+++++|+...-+...+.....++. |.
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~-~e 199 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN-WE 199 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc-hH
Confidence 33444556666666666666666666666666666666666666666666666666666655555555544444442 55
Q ss_pred HHHHHHHHHHHhC
Q 013800 285 RALTYFERAALAA 297 (436)
Q Consensus 285 ~A~~~~~~al~~~ 297 (436)
+|..++..+.+++
T Consensus 200 ~aa~dl~~a~kld 212 (377)
T KOG1308|consen 200 EAAHDLALACKLD 212 (377)
T ss_pred HHHHHHHHHHhcc
Confidence 5555555555443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.042 Score=57.43 Aligned_cols=183 Identities=17% Similarity=0.124 Sum_probs=128.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHc
Q 013800 211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-----KGDLYRAEDYYNHATM-----ADPGDGESWMQYAKLVWELH 280 (436)
Q Consensus 211 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~~ 280 (436)
.++...|..+|+.+.+. .+..+...+|.+|.. ..+.+.|+.+|+.+.+ ..-..+.+.+.+|.+|....
T Consensus 225 ~~~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 225 SGELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGL 302 (552)
T ss_pred chhhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCC
Confidence 34567899999988877 467778888888874 4789999999999977 11225667888998887732
Q ss_pred ---C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 281 ---R-DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 281 ---~-d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
. |+..|+.+|.++.... ++.+.+.+|.++... . .-.++..|.++|..|... .+
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g-----------------~--~~~d~~~A~~yy~~Aa~~--G~ 359 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETG-----------------T--KERDYRRAFEYYSLAAKA--GH 359 (552)
T ss_pred CCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcC-----------------C--ccccHHHHHHHHHHHHHc--CC
Confidence 2 5788999999998775 455667777433221 1 124678999999988764 46
Q ss_pred HHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CChHHHHHHHHHHHh
Q 013800 357 GEIMSQYAKLVWEL---HHDHDKALCYFERAVQASPADSHVLAAYACFLWET-EEDEDDSKSSDQFQQ 420 (436)
Q Consensus 357 ~~~~~~la~~~~~~---g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 420 (436)
..+.+.++.++..- ..+...|..++.++.+.. ++.+.+.++.++..- ++++.+...+....+
T Consensus 360 ~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 360 ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAE 425 (552)
T ss_pred hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 78888888887542 234889999999998887 345556666554433 666666655544443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.094 Score=51.17 Aligned_cols=157 Identities=18% Similarity=0.226 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013800 266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQ----DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG 341 (436)
Q Consensus 266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~ 341 (436)
...|...+.+....|. ++.|...+.++....+. .+.+.+..+.++|..|+..+|+..++..+... ....... .
T Consensus 146 ~~~~l~~a~~aRk~g~-~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~-~~~~~~~-~ 222 (352)
T PF02259_consen 146 AETWLKFAKLARKAGN-FQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR-LSKNIDS-I 222 (352)
T ss_pred HHHHHHHHHHHHHCCC-cHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hhhcccc-c
Confidence 4556666666666654 77777777777765522 45666777777777777777776666555410 0000000 0
Q ss_pred HHHHHHHH--------------HHhCCCCHHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 342 AEEYFSRA--------------ILANPGDGEIMSQYAKLVWEL------HHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 342 A~~~~~~a--------------l~~~p~~~~~~~~la~~~~~~------g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
....+... .........++..+|...... +. .++++..|.++++.+|....+|+.+|..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSES-SDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhcccccccc-HHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 00000000 000011245677777777777 67 8999999999999999999999999988
Q ss_pred HHHCCCh-----------------HHHHHHHHHHHhhCCCCh
Q 013800 402 LWETEED-----------------EDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 402 ~~~~g~~-----------------~~A~~~~~~al~l~p~~~ 426 (436)
+...-+. ..|+..|-+++.+.+.+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~~ 343 (352)
T PF02259_consen 302 NDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKYV 343 (352)
T ss_pred HHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCch
Confidence 6544211 348888888888887743
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.28 Score=48.78 Aligned_cols=32 Identities=13% Similarity=0.001 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCH
Q 013800 235 LRNYAQLLQKKG-DLYRAEDYYNHATMADPGDG 266 (436)
Q Consensus 235 ~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~ 266 (436)
+-.++.+|.... .+..|...+++++++....+
T Consensus 91 ~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p 123 (629)
T KOG2300|consen 91 ASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP 123 (629)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence 334444444433 44445555555555544433
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.031 Score=54.63 Aligned_cols=147 Identities=15% Similarity=0.144 Sum_probs=102.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C--
Q 013800 228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP----GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ-D-- 300 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~-~-- 300 (436)
.......|...+.+..+.|+++.|...+.++...++ ..+.+.+..+.+++..|+ ..+|+..++..+..... .
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~-~~~Ai~~L~~~~~~~~~~~~~ 220 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGE-QEEAIQKLRELLKCRLSKNID 220 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhhhccc
Confidence 344567888999999999999999999998887652 257788888889888875 89999998888872211 1
Q ss_pred ------------------------HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH------cCCHHHHHHHHHHHH
Q 013800 301 ------------------------SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS------KGDLEGAEEYFSRAI 350 (436)
Q Consensus 301 ------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------~g~~~~A~~~~~~al 350 (436)
.......+.++...| ..... .+..++++..|+.++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a---------------~w~~~~~~~~~~~~~~~~~~~~~~a~ 285 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLA---------------KWLDELYSKLSSESSDEILKYYKEAT 285 (352)
T ss_pred cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHH---------------HHHHhhccccccccHHHHHHHHHHHH
Confidence 000111222222222 22233 488999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHhcCC----------------HHHHHHHHHHHHHhCCC
Q 013800 351 LANPGDGEIMSQYAKLVWELHHD----------------HDKALCYFERAVQASPA 390 (436)
Q Consensus 351 ~~~p~~~~~~~~la~~~~~~g~d----------------~~~A~~~~~~al~~~p~ 390 (436)
+++|....+|+.+|..+...-.. ...|+..|-+++...+.
T Consensus 286 ~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 286 KLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999887554220 13466777777777766
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.048 Score=47.83 Aligned_cols=91 Identities=12% Similarity=0.116 Sum_probs=67.2
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEE 407 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 407 (436)
..+...+++++|+..++.++....+. .-+-.+||.++.++|. +++|+..+....... -....-...|.++...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k-~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKK-ADAALKTLDTIKEES-WAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhh-HHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCc
Confidence 67778888999998888888654432 3456788889999988 888888876543211 112345667889999999
Q ss_pred hHHHHHHHHHHHhhCC
Q 013800 408 DEDDSKSSDQFQQVAP 423 (436)
Q Consensus 408 ~~~A~~~~~~al~l~p 423 (436)
.++|+..|+++++..+
T Consensus 175 k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 175 KQEARAAYEKALESDA 190 (207)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999999988863
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00047 Score=64.95 Aligned_cols=125 Identities=14% Similarity=0.091 Sum_probs=86.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 013800 236 RNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEME 315 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 315 (436)
...+.-.+..|.+++|++.|.++|+++|....++...+.++.++++ +..|+..|..++.++|+...-+-..+
T Consensus 118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~k-p~~airD~d~A~ein~Dsa~~ykfrg------- 189 (377)
T KOG1308|consen 118 KVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKK-PNAAIRDCDFAIEINPDSAKGYKFRG------- 189 (377)
T ss_pred HHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccC-CchhhhhhhhhhccCcccccccchhh-------
Confidence 3455556677888888888888888888888888888888888876 88888888888888888777776666
Q ss_pred CchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013800 316 DDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAV 385 (436)
Q Consensus 316 ~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al 385 (436)
.....+|+|++|...+..+.+++-+ ..+--.+-.+.-..+. .++-...++++.
T Consensus 190 ---------------~A~rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV~p~a~k-i~e~~~k~er~~ 242 (377)
T KOG1308|consen 190 ---------------YAERLLGNWEEAAHDLALACKLDYD-EANSATLKEVFPNAGK-IEEHRRKYERAR 242 (377)
T ss_pred ---------------HHHHHhhchHHHHHHHHHHHhcccc-HHHHHHHHHhccchhh-hhhchhHHHHHH
Confidence 6666778888888888888777644 2222223333333333 344444444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.037 Score=47.21 Aligned_cols=82 Identities=18% Similarity=0.040 Sum_probs=71.2
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
++.+.+..+-...++.+++..++...--+.|+.+.+-..-|.++...|++.+|+..++.+....|..+.+--.++.|++.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34555556667778999999999999999999999999999999999999999999999999999999888889988877
Q ss_pred Hc
Q 013800 279 LH 280 (436)
Q Consensus 279 ~~ 280 (436)
++
T Consensus 91 ~~ 92 (160)
T PF09613_consen 91 LG 92 (160)
T ss_pred cC
Confidence 75
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0031 Score=63.37 Aligned_cols=107 Identities=18% Similarity=0.170 Sum_probs=66.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHH
Q 013800 270 MQYAKLVWELHRDQHRALTYFERAALAAPQDSN-ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 270 ~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 348 (436)
.++|-+||...|+...|++|+..|+...|.... .+.+++ .+..+.|-.-.|-..+.+
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la----------------------~~~~~~~~~~da~~~l~q 667 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLA----------------------NLLIHYGLHLDATKLLLQ 667 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHH----------------------HHHHHhhhhccHHHHHHH
Confidence 455556666656667777777777766665433 245566 444445555566666666
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 349 AILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYA 399 (436)
Q Consensus 349 al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la 399 (436)
++.++...+-.++.+|.++..+.+ .+.|++.|+.|+.++|+++.+-..|-
T Consensus 668 ~l~~~~sepl~~~~~g~~~l~l~~-i~~a~~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 668 ALAINSSEPLTFLSLGNAYLALKN-ISGALEAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred HHhhcccCchHHHhcchhHHHHhh-hHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 666666666666666666666666 66777777777766666665444433
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.16 Score=54.01 Aligned_cols=194 Identities=16% Similarity=0.135 Sum_probs=114.9
Q ss_pred HhhhhhhCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHH
Q 013800 204 VDLIMPNFDDSAEAEEYYKRMIDEYPC---------HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD-----GESW 269 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~~P~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 269 (436)
.+.......++.+|..+..++...-+. .+......|.+....|++++|+++.+.++..-|.+ ..+.
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 344566778888888888877665433 12445566778888999999999999999887765 3455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHH--HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH-
Q 013800 270 MQYAKLVWELHRDQHRALTYFERAALAAPQD----SNIL--AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA- 342 (436)
Q Consensus 270 ~~la~~~~~~~~d~~~A~~~~~~al~~~p~~----~~~~--~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A- 342 (436)
..+|.+....| ++++|..+.+.+.++.... -.+| ...+ .++..+|+...|
T Consensus 501 sv~~~a~~~~G-~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s----------------------~il~~qGq~~~a~ 557 (894)
T COG2909 501 SVLGEAAHIRG-ELTQALALMQQAEQMARQHDVYHLALWSLLQQS----------------------EILEAQGQVARAE 557 (894)
T ss_pred hhhhHHHHHhc-hHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH----------------------HHHHHhhHHHHHH
Confidence 66777766665 5999999998888874332 2222 2223 455555632222
Q ss_pred -HHHHHHH----HHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----CCCH--H-HHHHHHHHHHHCCChHH
Q 013800 343 -EEYFSRA----ILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS----PADS--H-VLAAYACFLWETEEDED 410 (436)
Q Consensus 343 -~~~~~~a----l~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~----p~~~--~-~~~~la~~~~~~g~~~~ 410 (436)
...|... +...|-........+.+++..-+ ++.+.....+.+++. |... . ++..++.+++..|+.++
T Consensus 558 ~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r-~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~ 636 (894)
T COG2909 558 QEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR-LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDK 636 (894)
T ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH-HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHH
Confidence 2222221 12233333344444444444444 555555555554432 2221 1 22467777777788877
Q ss_pred HHHHHHHHHhh
Q 013800 411 DSKSSDQFQQV 421 (436)
Q Consensus 411 A~~~~~~al~l 421 (436)
|...+.+...+
T Consensus 637 A~~~l~~~~~l 647 (894)
T COG2909 637 ALAQLDELERL 647 (894)
T ss_pred HHHHHHHHHHH
Confidence 77777776655
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.12 Score=52.01 Aligned_cols=170 Identities=16% Similarity=0.189 Sum_probs=120.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcc
Q 013800 251 AEDYYNHATMADPGDGESWMQYAKLVWELHRD--------------QHRALTYFERAALAAP-QDSNILAAYACFLWEME 315 (436)
Q Consensus 251 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d--------------~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g 315 (436)
-.-.|++++..-+-.+++|+..+..+...+ + .+++..+|++++..-- .+...++.++...-..-
T Consensus 264 v~yayeQ~ll~l~~~peiWy~~s~yl~~~s-~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~ 342 (656)
T KOG1914|consen 264 VMYAYEQCLLYLGYHPEIWYDYSMYLIEIS-DLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRY 342 (656)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhh-HHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhc
Confidence 344577888888888999998886655543 3 4789999999987543 35555566665444333
Q ss_pred C---chHHHHHHHHHHHH-------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 013800 316 D---DGEDDKAQEEHIQV-------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALC 379 (436)
Q Consensus 316 ~---~~~A~~~~~~~~~~-------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~ 379 (436)
+ .+.....+++.+.. ..-.+..-...|...|.+|-+.--.-..++..-|.+-+...+|..-|..
T Consensus 343 ~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~Afr 422 (656)
T KOG1914|consen 343 DDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFR 422 (656)
T ss_pred ccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHH
Confidence 3 45555556555554 2222344466777788877665433335555555554444445999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 380 YFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 380 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
.|+-.+...++.+.....+...+..+++...|..+|++++..
T Consensus 423 IFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 423 IFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999876
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.47 Score=46.91 Aligned_cols=49 Identities=10% Similarity=0.142 Sum_probs=41.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q 013800 367 VWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 367 ~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 417 (436)
++..|+ |.++.-+-.-..++.| .+.++..+|.++....+|++|..++..
T Consensus 472 Lysqge-y~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 472 LYSQGE-YHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHhccc-HHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 466777 8888888777888899 699999999999999999999877653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0018 Score=39.83 Aligned_cols=30 Identities=23% Similarity=0.447 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013800 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADP 263 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 263 (436)
+|+.+|.++..+|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555555555555555555555555554
|
... |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.015 Score=57.67 Aligned_cols=94 Identities=17% Similarity=0.284 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAA 294 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al 294 (436)
..-..+|+.++...+.+...|..+.....+.+.+.+--..|.+++..+|+++..|..-|.-.+..+.+.+.|..+|.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 45567788888888888888888888888888888888888888888888888888888888877766888888888888
Q ss_pred HhCCCCHHHHHHHH
Q 013800 295 LAAPQDSNILAAYA 308 (436)
Q Consensus 295 ~~~p~~~~~~~~la 308 (436)
+.+|+.+..|..+-
T Consensus 168 R~npdsp~Lw~eyf 181 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYF 181 (568)
T ss_pred hcCCCChHHHHHHH
Confidence 88888888875443
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.23 Score=49.34 Aligned_cols=192 Identities=15% Similarity=0.081 Sum_probs=131.0
Q ss_pred HhhhhhhCCCHHHHHHHHHHHHHh---CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH--HHH
Q 013800 204 VDLIMPNFDDSAEAEEYYKRMIDE---YPC-------HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-DGE--SWM 270 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~---~P~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~--~~~ 270 (436)
+..+-.-.|++.+|++....+.+. .|. .+.+++.+|......+.++.|...|..|.+.... +.. .-.
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nl 408 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNL 408 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344566789999999888877663 454 3466778888888899999999999999987554 333 345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHH
Q 013800 271 QYAKLVWELHRDQHRALTYFERAALAAPQDS---NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFS 347 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~ 347 (436)
++|.+|...++ +..+|+-.-.+.|.+. ......+.+++..| ...+.++++.+|...+.
T Consensus 409 nlAi~YL~~~~----~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~g---------------lfaf~qn~lnEaK~~l~ 469 (629)
T KOG2300|consen 409 NLAISYLRIGD----AEDLYKALDLIGPLNTNSLSSQRLEASILYVYG---------------LFAFKQNDLNEAKRFLR 469 (629)
T ss_pred hHHHHHHHhcc----HHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHH---------------HHHHHhccHHHHHHHHH
Confidence 67877777543 4445555445566532 22233344444433 77788999999999999
Q ss_pred HHHHhCCC------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHHHHH---HHHHHHHHCCC--hHHHHH
Q 013800 348 RAILANPG------DGEIMSQYAKLVWELHHDHDKALCYFERAVQAS---PADSHVLA---AYACFLWETEE--DEDDSK 413 (436)
Q Consensus 348 ~al~~~p~------~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~---p~~~~~~~---~la~~~~~~g~--~~~A~~ 413 (436)
+.+++... ..-.+..|+.+..-.|+ ..++....+-++++. |+.+..++ .+-.++...|+ .+++.+
T Consensus 470 e~Lkmanaed~~rL~a~~LvLLs~v~lslgn-~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e 548 (629)
T KOG2300|consen 470 ETLKMANAEDLNRLTACSLVLLSHVFLSLGN-TVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENE 548 (629)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHHHHHHhcc-hHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence 99988622 13456678888899999 999999999888765 55553333 34456777777 444444
Q ss_pred HH
Q 013800 414 SS 415 (436)
Q Consensus 414 ~~ 415 (436)
.+
T Consensus 549 ~~ 550 (629)
T KOG2300|consen 549 AF 550 (629)
T ss_pred HH
Confidence 44
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.14 Score=50.48 Aligned_cols=112 Identities=16% Similarity=0.110 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH--HHHH------HH-----------
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK--AQEE------HI----------- 328 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~------~~----------- 328 (436)
.+..-|.-+|+.|+.-++|+..++.+++..+.+.......-.+... .+.+|+. .+.+ .+
T Consensus 381 ~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq--~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 381 YLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQ--AYKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHH--HHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 3444566677777666788888888888888776433211100000 0001100 0000 00
Q ss_pred ----HH-----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013800 329 ----QV-----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 329 ----~~-----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~ 383 (436)
.. ..++.+|+|.++.-+-.-..+++| .+.++..+|.+++...+ |++|..++..
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~-Y~eA~~~l~~ 520 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKR-YQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhh-HHHHHHHHHh
Confidence 00 667789999999999999999999 79999999999999999 9999999875
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.18 Score=49.65 Aligned_cols=201 Identities=12% Similarity=0.147 Sum_probs=141.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Q 013800 219 EYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA- 297 (436)
Q Consensus 219 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~- 297 (436)
-.+++++...|-.+++|+.....+...++-+.|+....+++...|. ....++.++ .+.+|-+....+|+++++.-
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~y-el~nd~e~v~~~fdk~~q~L~ 364 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYY-ELVNDEEAVYGCFDKCTQDLK 364 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHH-hhcccHHHHhhhHHHHHHHHH
Confidence 3568888888888999999999999999999999999998888777 444555443 33344555566666665421
Q ss_pred -----------------CC-CH-----------HHHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHH
Q 013800 298 -----------------PQ-DS-----------NILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQS 335 (436)
Q Consensus 298 -----------------p~-~~-----------~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~ 335 (436)
|. .. -+|..+.+...+......|+.++-++-+. .-+..
T Consensus 365 r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~ 444 (660)
T COG5107 365 RKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA 444 (660)
T ss_pred HHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh
Confidence 10 01 12223444444555566666666655443 45667
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCChHHHHH
Q 013800 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD--SHVLAAYACFLWETEEDEDDSK 413 (436)
Q Consensus 336 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~ 413 (436)
.|++.-|-..|+-.+...|+++...+..-..+...++ -..|..+|+++++.-.+. ..+|..+......-|+...+..
T Consensus 445 ~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ind-e~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~s 523 (660)
T COG5107 445 TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRIND-EENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYS 523 (660)
T ss_pred cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCc-HHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHh
Confidence 8899999999999999999988877777778888888 788999999887654433 4667777777777788877777
Q ss_pred HHHHHHhhCCC
Q 013800 414 SSDQFQQVAPI 424 (436)
Q Consensus 414 ~~~~al~l~p~ 424 (436)
.-++..++.|.
T Consensus 524 Le~rf~e~~pQ 534 (660)
T COG5107 524 LEERFRELVPQ 534 (660)
T ss_pred HHHHHHHHcCc
Confidence 76766666554
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.028 Score=55.86 Aligned_cols=97 Identities=16% Similarity=0.274 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ 362 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (436)
...-...|+.|+...+.|...|..+. ....+.+.+.+--..|.+++..+|+++++|..
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi----------------------~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~ 144 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYI----------------------AFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIY 144 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHH----------------------HHHHHhcchhHHHHHHHHHHHhCCCCchhHHh
Confidence 45667889999999999999999988 55556666889999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 363 YAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 363 la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
-|.-.+..+.+.+.|..+|.++|..+|+++..|..+-..
T Consensus 145 aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 145 AAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred hhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHH
Confidence 999999988879999999999999999999877655444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0029 Score=38.86 Aligned_cols=30 Identities=30% Similarity=0.479 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013800 359 IMSQYAKLVWELHHDHDKALCYFERAVQASP 389 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~~A~~~~~~al~~~p 389 (436)
+|+.+|.++..+|+ +++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~-~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGD-YEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHhhCC
Confidence 45555555555555 5555555555555555
|
... |
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.46 Score=48.02 Aligned_cols=209 Identities=16% Similarity=0.106 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG--DGESWMQYAKLVWELHRDQHRALTYFER 292 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~d~~~A~~~~~~ 292 (436)
....+.+.......|+.+...+..+..+...|+.+.|+..+...+...-. ..-.++.+|.++..+.+ |.+|...+..
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~-~~~aad~~~~ 328 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQ-YSRAADSFDL 328 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHH
Confidence 45566666777789999999999999999999988899999888871111 12345667777777765 9999999988
Q ss_pred HHHhCCCCHHHHHHHH-H--------HHHHccCchHHHHHHHHHHHH------------------hHHHHcC--------
Q 013800 293 AALAAPQDSNILAAYA-C--------FLWEMEDDGEDDKAQEEHIQV------------------LPIQSKG-------- 337 (436)
Q Consensus 293 al~~~p~~~~~~~~la-~--------~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~g-------- 337 (436)
..+...-..-.+..++ - +....|+.+.+....+..... .-+...+
T Consensus 329 L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~l 408 (546)
T KOG3783|consen 329 LRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILL 408 (546)
T ss_pred HHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccc
Confidence 8877654444443333 1 222233444444433311111 1111111
Q ss_pred -----------------CHHHHHHHHHHHHHh----CCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCC--
Q 013800 338 -----------------DLEGAEEYFSRAILA----NPGD-GEIMSQYAKLVWELHHDHDKALCYFERAVQA---SPA-- 390 (436)
Q Consensus 338 -----------------~~~~A~~~~~~al~~----~p~~-~~~~~~la~~~~~~g~d~~~A~~~~~~al~~---~p~-- 390 (436)
...+.+ .++..++. ++++ .-.++.+|.++..+|+ ...|..+|...++. ...
T Consensus 409 a~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~-~~~a~~~f~i~~~~e~~~~~d~ 486 (546)
T KOG3783|consen 409 ASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGD-SEVAPKCFKIQVEKESKRTEDL 486 (546)
T ss_pred cchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhhcccc
Confidence 011111 11111111 1121 2346778999999998 89999999998843 112
Q ss_pred --CHHHHHHHHHHHHHCCC-hHHHHHHHHHHHhhCCCCh
Q 013800 391 --DSHVLAAYACFLWETEE-DEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 391 --~~~~~~~la~~~~~~g~-~~~A~~~~~~al~l~p~~~ 426 (436)
.|.+++.+|.+++.+|. ..++.+++.+|.+...++.
T Consensus 487 w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 487 WAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred ccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 24789999999999999 9999999999998765543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.12 Score=45.34 Aligned_cols=116 Identities=9% Similarity=0.012 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCchHHHHHH
Q 013800 251 AEDYYNHATMADPGDG---ESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---SNILAAYACFLWEMEDDGEDDKAQ 324 (436)
Q Consensus 251 A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~ 324 (436)
.....++....++... .+...+|..+.+.++ +++|+..++.++....+. .-+-..++
T Consensus 71 ~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~-~d~A~aqL~~~l~~t~De~lk~l~~lRLA---------------- 133 (207)
T COG2976 71 SIAAAEKFVQANGKTIYAVLAALELAKAEVEANN-LDKAEAQLKQALAQTKDENLKALAALRLA---------------- 133 (207)
T ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHccchhHHHHHHHHHHHH----------------
Confidence 3334444444454432 234566777777764 888888888888654442 22335566
Q ss_pred HHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013800 325 EEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 325 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~ 391 (436)
++..++|.+++|+..+.....-.- .+......|.++...|+ -++|+..|+++++..++.
T Consensus 134 ------rvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~-k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 134 ------RVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGD-KQEARAAYEKALESDASP 192 (207)
T ss_pred ------HHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCc-hHHHHHHHHHHHHccCCh
Confidence 777788888888877655432111 13345667888888888 889999999998887553
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.2 Score=54.02 Aligned_cols=201 Identities=14% Similarity=0.073 Sum_probs=134.9
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD--PG-DGESWMQY 272 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~l 272 (436)
+.+..|..+|....+.|...+|++.|-++ +++..|.....+..+.|.|++-+.++..+-+.. |. +.+..+.+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAY 1176 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHH
Confidence 44578999999999999999999988776 778888888899999999999999888876643 22 22333333
Q ss_pred HHH------------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHH
Q 013800 273 AKL------------------------VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI 328 (436)
Q Consensus 273 a~~------------------------~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 328 (436)
|.. ++..+. |+.|.-+| .+..-|..++..+..+|.++.|....+++-
T Consensus 1177 Akt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~-y~aAkl~y--------~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAGPNVANIQQVGDRCFEEKM-YEAAKLLY--------SNVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHhchHHHHHHHhcCCCchhHHHHhHHHhhhhh-hHHHHHHH--------HHhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 222 222221 33333332 233456678888888888888877766321
Q ss_pred HH-------------------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 013800 329 QV-------------------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH 371 (436)
Q Consensus 329 ~~-------------------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 371 (436)
.. ..|...|-+++-+..++.++-+...+--.+..||.+|.+-
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky- 1326 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY- 1326 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-
Confidence 11 7788889999999999999988887778888888877665
Q ss_pred CCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHHHH
Q 013800 372 HDHDKALCYFERAVQA--------SPADSHVLAAYACFLWETEEDEDDS 412 (436)
Q Consensus 372 ~d~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~ 412 (436)
+ +++-.+.++-.... .-+....|..+.-+|.+-..|+.|.
T Consensus 1327 k-p~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1327 K-PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred C-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 3 45555554433221 1122356666666666666666653
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.022 Score=43.97 Aligned_cols=77 Identities=12% Similarity=-0.028 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013800 342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD--SHVLAAYACFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al 419 (436)
.+..+++.++.+|++..+.+.+|..+...|+ +++|++.+-.+++.+++. ..+...+-.++..+|..+.....|++-+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~-~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGD-YEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3567888999999999999999999999999 999999999999988765 5777888888888888776666666644
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.027 Score=52.57 Aligned_cols=66 Identities=20% Similarity=0.247 Sum_probs=45.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 242 LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
..+.|+.++|...|+.|+++.|.+++++..+|.+.... ++.-+|-.+|-+|+.++|.+.+++.+.+
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~-~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMH-NEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhh-hhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 34567777777777777777777777777777554443 4577777777777777777777766555
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.05 Score=43.24 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
++++|.++..+.|..+..++.+|.-+.-... |+++..-.+++|.+
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~-Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKY-YKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHH-HHHHHHHHHHHhcc
Confidence 5666677777777666666666655544444 66666666666543
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.037 Score=51.90 Aligned_cols=70 Identities=16% Similarity=0.079 Sum_probs=63.2
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
.+|.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|. +..|...++..++..|+++.+.....++
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c-~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC-EHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 888999999999999999999999999999999999999999 9999999999999999988765544433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.21 Score=42.61 Aligned_cols=92 Identities=13% Similarity=0.086 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013800 282 DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 361 (436)
+.+++...+..+--+.|+.+.....-| +++...|+|.+|+..++.+.+..|..+.+.-
T Consensus 25 ~~~D~e~lL~ALrvLRP~~~e~~~~~~----------------------~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kA 82 (160)
T PF09613_consen 25 DPDDAEALLDALRVLRPEFPELDLFDG----------------------WLHIVRGDWDDALRLLRELEERAPGFPYAKA 82 (160)
T ss_pred ChHHHHHHHHHHHHhCCCchHHHHHHH----------------------HHHHHhCCHHHHHHHHHHHhccCCCChHHHH
Confidence 588888888888888888888888888 8888889999999999998888888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 362 QYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAY 398 (436)
Q Consensus 362 ~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~l 398 (436)
.++.|++.+|+ ..=..+-.++++..++ +.+....
T Consensus 83 LlA~CL~~~~D--~~Wr~~A~evle~~~d-~~a~~Lv 116 (160)
T PF09613_consen 83 LLALCLYALGD--PSWRRYADEVLESGAD-PDARALV 116 (160)
T ss_pred HHHHHHHHcCC--hHHHHHHHHHHhcCCC-hHHHHHH
Confidence 88888888877 3333444445555543 4444333
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.36 Score=52.11 Aligned_cols=87 Identities=17% Similarity=0.164 Sum_probs=56.4
Q ss_pred HhhhhhhCCCHHHHHHHHHHH------HH----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 204 VDLIMPNFDDSAEAEEYYKRM------ID----------------EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~a------l~----------------~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
++.+....+-|++|...|++- ++ ..-+.+.+|..+|.+..+.|...+|++-|-+|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 344555556667777766642 11 01245677888888888888888888877654
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 262 DPGDGESWMQYAKLVWELHRDQHRALTYFERAALA 296 (436)
Q Consensus 262 ~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~ 296 (436)
+++..+...-.+....+. |++-++++.-+-+.
T Consensus 1131 --dDps~y~eVi~~a~~~~~-~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGK-YEDLVKYLLMARKK 1162 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCc-HHHHHHHHHHHHHh
Confidence 566667666666666664 88777777766554
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0065 Score=36.79 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPG 264 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 264 (436)
+++.+|.++...|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=96.42 E-value=1.6 Score=46.24 Aligned_cols=236 Identities=14% Similarity=0.061 Sum_probs=132.0
Q ss_pred CCCChHHHHHhhcCCCCCCC-h----hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCC---CHH-HHHHH--HHHHHHcC
Q 013800 178 RPVSPPMYLAMGLGISVPGF-D----DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPC---HPL-LLRNY--AQLLQKKG 246 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~-~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~~-~~~~l--a~~~~~~g 246 (436)
+.+.|+.|+.+|+.+..... . .+-..+..++.+.+... |+..+++.++.... ... ..+.+ ...+...+
T Consensus 75 n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~ 153 (608)
T PF10345_consen 75 NLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHK 153 (608)
T ss_pred CHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcc
Confidence 66777888888877765411 1 22334456666666655 88888887775443 221 11122 22333346
Q ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHH
Q 013800 247 DLYRAEDYYNHATMAD--PGDGESWMQ----YAKLVWELHRDQHRALTYFERAALAAP----------QDSNILAAYACF 310 (436)
Q Consensus 247 ~~~~A~~~~~~al~~~--p~~~~~~~~----la~~~~~~~~d~~~A~~~~~~al~~~p----------~~~~~~~~la~~ 310 (436)
++..|++.++...... ..++.+... .+.++...+ ..+++++.+++++.... ....+|..+-.+
T Consensus 154 d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~-~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l 232 (608)
T PF10345_consen 154 DYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRG-SPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDL 232 (608)
T ss_pred cHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 8888888888877765 344433222 233333333 26677777776643221 112333333322
Q ss_pred --HHHccCchHHHHHHHH---HHHH---------------------------------------------------hHHH
Q 013800 311 --LWEMEDDGEDDKAQEE---HIQV---------------------------------------------------LPIQ 334 (436)
Q Consensus 311 --~~~~g~~~~A~~~~~~---~~~~---------------------------------------------------~~~~ 334 (436)
....|+...+...+.+ .++. ....
T Consensus 233 ~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~ 312 (608)
T PF10345_consen 233 CCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNL 312 (608)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHh
Confidence 3333443344433331 1100 3344
Q ss_pred HcCCHHHHHHHHHHHHHhCCC----------C----------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013800 335 SKGDLEGAEEYFSRAILANPG----------D----------------GEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~----------~----------------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~ 388 (436)
..+..++|.+++.++++.-.+ . ..+....+.+.+-.++ +..|...+..+....
T Consensus 313 ~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~-~~~a~~~l~~~~~~~ 391 (608)
T PF10345_consen 313 YKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD-WSKATQELEFMRQLC 391 (608)
T ss_pred hccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHH
Confidence 455566777777777764111 0 1233455666677778 888888888776543
Q ss_pred ---CC------CHHHHHHHHHHHHHCCChHHHHHHHH
Q 013800 389 ---PA------DSHVLAAYACFLWETEEDEDDSKSSD 416 (436)
Q Consensus 389 ---p~------~~~~~~~la~~~~~~g~~~~A~~~~~ 416 (436)
|. .+..++..|..+...|+.+.|...|.
T Consensus 392 ~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 392 QRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred hcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 22 35677888888889999999999998
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.29 Score=45.19 Aligned_cols=175 Identities=11% Similarity=0.086 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHcCC
Q 013800 212 DDSAEAEEYYKRMIDEYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMA-----DPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~d 282 (436)
.+.++|+.-|++.+++.++.. .++..+..+++++++|++-++.|.+.+.. ..+..+-..+-..-|....++
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 455677777777777766544 34555566667777777777766666542 111111111111111111122
Q ss_pred HHHHHHHHHHHHHh--CCCCHHHH----HHHHHHHHHccCchHHHHHHHHHHHH------------------------hH
Q 013800 283 QHRALTYFERAALA--APQDSNIL----AAYACFLWEMEDDGEDDKAQEEHIQV------------------------LP 332 (436)
Q Consensus 283 ~~~A~~~~~~al~~--~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~~~~------------------------~~ 332 (436)
.+--...|+..++. +..+...| ..+|.++...+.+.+..+++.+..+. ..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 33333344443332 12233334 24666666666665555555433322 55
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC--HHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 333 IQSKGDLEGAEEYFSRAILANPGD--GEIMS----QYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~--~~~~~----~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
|..+++-.+-...|++++.+...- |.++- .=|..+.+.|+ |++|-..|-.|++.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~-fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGE-FEKAHTDFFEAFKN 260 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccch-HHHHHhHHHHHHhc
Confidence 666666667777788877764321 22221 22344566677 88887777777764
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.19 Score=52.31 Aligned_cols=207 Identities=13% Similarity=0.073 Sum_probs=112.7
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHH------HHHh----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKR------MIDE----YPCHP-LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESW 269 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~------al~~----~P~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 269 (436)
|-..|.++.+..++++|+++|++ ++++ .|... ..--..|.-+...|+++.|+.+|-.+-.+
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~-------- 735 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL-------- 735 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH--------
Confidence 44455666777777778777764 3332 23221 12223455566777888887777654211
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHH
Q 013800 270 MQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEY 345 (436)
Q Consensus 270 ~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~ 345 (436)
........... +|.+|+..++..-... .....+-..+.-|...|+++.|.+++.+.-.. ..|-+.|+|.+|.++
T Consensus 736 ~kaieaai~ak-ew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 736 IKAIEAAIGAK-EWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred HHHHHHHhhhh-hhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHH
Confidence 00000111122 3666666555433221 12223345566677777888887777633221 777788888888766
Q ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHhcCCHHHH-------------HHHHHHH------HH----hCCCC-HHHHHHHHH
Q 013800 346 FSRAILANPGD-GEIMSQYAKLVWELHHDHDKA-------------LCYFERA------VQ----ASPAD-SHVLAAYAC 400 (436)
Q Consensus 346 ~~~al~~~p~~-~~~~~~la~~~~~~g~d~~~A-------------~~~~~~a------l~----~~p~~-~~~~~~la~ 400 (436)
-++.. .|.. ...|...+.-+-..|+ |.+| +.+|.+. +. ..|+. .+.+..++.
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgk-f~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~ 890 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGK-FAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAK 890 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcc-hhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHH
Confidence 55543 2332 2334444555555555 5544 4444432 11 12332 256677888
Q ss_pred HHHHCCChHHHHHHHHHHHh
Q 013800 401 FLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~ 420 (436)
-|...|+...|...|-++-.
T Consensus 891 e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 891 ELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred HHHhccChhHHHHHHHhhhh
Confidence 88888888888887765543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.21 Score=51.65 Aligned_cols=186 Identities=18% Similarity=0.101 Sum_probs=103.9
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH----------HHHHHHHHHHcCCHHHHHHHHHHH
Q 013800 224 MIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESW----------MQYAKLVWELHRDQHRALTYFERA 293 (436)
Q Consensus 224 al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~~~~~~d~~~A~~~~~~a 293 (436)
.++.+| ++..|..+|.....+-.++-|+..|-+.-.. +.- ... ...|.+-..-| +|++|.+.|-.+
T Consensus 685 fiEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gi-k~vkrl~~i~s~~~q~aei~~~~g-~feeaek~yld~ 760 (1189)
T KOG2041|consen 685 FIEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGI-KLVKRLRTIHSKEQQRAEISAFYG-EFEEAEKLYLDA 760 (1189)
T ss_pred HHhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cch-hHHHHhhhhhhHHHHhHhHhhhhc-chhHhhhhhhcc
Confidence 345566 7888999998888888888888777665221 110 011 12222222233 366666665332
Q ss_pred HHhC-------------------------C---CCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHH
Q 013800 294 ALAA-------------------------P---QDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEG 341 (436)
Q Consensus 294 l~~~-------------------------p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~ 341 (436)
-+.+ . ....++.++|..+..+..+++|.++|...-.. .+++...+|++
T Consensus 761 drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~ 840 (1189)
T KOG2041|consen 761 DRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGE 840 (1189)
T ss_pred chhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhh
Confidence 1111 1 12345666666666666666666666533222 45555555544
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH-------------------HHhC-----CCCHHHHHH
Q 013800 342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA-------------------VQAS-----PADSHVLAA 397 (436)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~a-------------------l~~~-----p~~~~~~~~ 397 (436)
-.. ....-|++.+.+-.+|.++...|. .++|.+.|-+. +++. |.-......
T Consensus 841 LE~----la~~Lpe~s~llp~~a~mf~svGM-C~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tliak 915 (1189)
T KOG2041|consen 841 LEV----LARTLPEDSELLPVMADMFTSVGM-CDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAK 915 (1189)
T ss_pred HHH----HHHhcCcccchHHHHHHHHHhhch-HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 322 233458888888888888888888 88887766432 1111 221122233
Q ss_pred HHHHHHHCCChHHHHHHHHHH
Q 013800 398 YACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 398 la~~~~~~g~~~~A~~~~~~a 418 (436)
.+.-+...++.-+|++.++++
T Consensus 916 ~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 916 QAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHhhcchHHHHHHhhhc
Confidence 344466667777788777766
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.009 Score=37.38 Aligned_cols=25 Identities=32% Similarity=0.666 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
|.++|.+|...|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.01 Score=35.88 Aligned_cols=31 Identities=26% Similarity=0.514 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 359 IMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
+++.+|.++...|+ +++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~-~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGD-YDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCH-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccC-HHHHHHHHHHHHHHCcC
Confidence 45666666666666 66666666666666665
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.17 Score=42.43 Aligned_cols=75 Identities=12% Similarity=-0.077 Sum_probs=64.9
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 281 (436)
.-...++.+++..++..+--+.|+.+.+-..-|.++...|++.+|+..++...+..+..+...-.++.|++.++.
T Consensus 19 ~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 19 YALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 444478889999999999999999999999999999999999999999999998888888888888888777753
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.013 Score=54.68 Aligned_cols=67 Identities=18% Similarity=0.323 Sum_probs=62.2
Q ss_pred hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
.+.|+.++|..+|+.++.+.|++++++..+|.+....++.-+|-.+|.+|+.+.|.+.+++.+.+..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3459999999999999999999999999999999999999999999999999999999988877653
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.012 Score=36.84 Aligned_cols=29 Identities=14% Similarity=0.082 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 394 VLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
++.+||.++..+|++++|+++|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46778888888888888888888866553
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.17 Score=40.62 Aligned_cols=88 Identities=16% Similarity=0.095 Sum_probs=66.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HhCCCCHH
Q 013800 333 IQSKGDLEGAEEYFSRAILANPG------------DGEIMSQYAKLVWELHHDHDKALCYFERAV-------QASPADSH 393 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~d~~~A~~~~~~al-------~~~p~~~~ 393 (436)
...-|-|++|...+++|+++... +.-.+..|+.++..+|+ |++++..-.++| +++.+...
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgr-y~e~L~sA~~aL~YFNRRGEL~qdeGk 97 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGR-YDECLQSADRALRYFNRRGELHQDEGK 97 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHH--TTSTHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHhhccccccccch
Confidence 34568999999999999987422 24567788999999999 998887777766 45555554
Q ss_pred ----HHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 394 ----VLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 394 ----~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
+.++.+..+..+|+.++|+..|+.+-++
T Consensus 98 lWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 98 LWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4577889999999999999999998775
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.21 Score=50.77 Aligned_cols=143 Identities=17% Similarity=0.000 Sum_probs=110.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 013800 212 DDSAEAEEYYKRMIDEYPCHPLLLRN--YAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTY 289 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~ 289 (436)
+...-++..+...+.++|.++..+.. +...+...+....+...+..++..+|++..+..+++..+...++.+.-+...
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 33444777777777888888876443 4677778888889999999999999999999999998888777655566666
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 290 FERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE 369 (436)
Q Consensus 290 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 369 (436)
.+.+....|.+......+..++. .+ ......|+..++.....++++..|.++.+...+.....+
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~ 188 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQ-LG---------------RYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQE 188 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHH-HH---------------HHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHH
Confidence 66689999999888777755544 33 667778999999999999999999987777666666444
Q ss_pred h
Q 013800 370 L 370 (436)
Q Consensus 370 ~ 370 (436)
.
T Consensus 189 ~ 189 (620)
T COG3914 189 Q 189 (620)
T ss_pred h
Confidence 3
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.35 Score=49.26 Aligned_cols=139 Identities=17% Similarity=0.094 Sum_probs=103.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH
Q 013800 245 KGDLYRAEDYYNHATMADPGDGESWMQY--AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK 322 (436)
Q Consensus 245 ~g~~~~A~~~~~~al~~~p~~~~~~~~l--a~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 322 (436)
.+...-++..+...+.++|.++..+... ...+...+ +...+...+..++..+|.+..+..+++.
T Consensus 44 ~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~L~~------------- 109 (620)
T COG3914 44 EGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLA-DSTLAFLAKRIPLSVNPENCPAVQNLAA------------- 109 (620)
T ss_pred cCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccc-cchhHHHHHhhhHhcCcccchHHHHHHH-------------
Confidence 3444447778888888899998875544 44444444 4678899999999999999999999994
Q ss_pred HHHHHHHHhHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHH------HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 323 AQEEHIQVLPIQSKGD-LEGAEEYFSRAILANPGDGEIMSQY------AKLVWELHHDHDKALCYFERAVQASPADSHVL 395 (436)
Q Consensus 323 ~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l------a~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~ 395 (436)
.....|. +.-+..+.+.+....|.+......+ +..+..+|+ ..++...+.+++.+.|.++.+.
T Consensus 110 ---------ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~l~~~~d~~p~~~~~~ 179 (620)
T COG3914 110 ---------ALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGR-TAEAELALERAVDLLPKYPRVL 179 (620)
T ss_pred ---------HHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhhhhhhhhH
Confidence 3333444 4444555555888899988877766 888888999 9999999999999999998777
Q ss_pred HHHHHHHHHCCC
Q 013800 396 AAYACFLWETEE 407 (436)
Q Consensus 396 ~~la~~~~~~g~ 407 (436)
..+.....++..
T Consensus 180 ~~~~~~r~~~cs 191 (620)
T COG3914 180 GALMTARQEQCS 191 (620)
T ss_pred hHHHHHHHHhcc
Confidence 666655444443
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.068 Score=42.47 Aligned_cols=91 Identities=15% Similarity=0.129 Sum_probs=65.2
Q ss_pred hhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcC----C-------HHHHHHHHHHHHHhCCCCHHHHH
Q 013800 205 DLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKG----D-------LYRAEDYYNHATMADPGDGESWM 270 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g----~-------~~~A~~~~~~al~~~p~~~~~~~ 270 (436)
+..+...|++-+|+++.+..+..++++. ..+...|.++..+. + .-.+++.|.++..+.|..+..++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 4456778999999999999999888766 45666777776433 2 23577788888888888877777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 271 QYAKLVWELHRDQHRALTYFERAALA 296 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~ 296 (436)
.+|.-+-.... |++++.-.++++.+
T Consensus 83 ~la~~l~s~~~-Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 83 ELASQLGSVKY-YKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhhhHHH-HHHHHHHHHHHhcc
Confidence 77765444443 77777777776654
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.067 Score=50.21 Aligned_cols=67 Identities=16% Similarity=0.067 Sum_probs=32.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 237 NYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNIL 304 (436)
Q Consensus 237 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~ 304 (436)
++=.+|.+.++++.|+.+.++.+.+.|+++.-+...|.+|.+++. +..|...++..++..|+++.+-
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c-~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC-EHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHhCCCchhHH
Confidence 334444445555555555555555555555545555544444443 4555555555555555444433
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.13 Score=39.57 Aligned_cols=64 Identities=14% Similarity=-0.016 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHc
Q 013800 217 AEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD--GESWMQYAKLVWELH 280 (436)
Q Consensus 217 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~ 280 (436)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++..+|
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 4567888889999999999999999999999999999999888887764 444444444444444
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.048 Score=37.41 Aligned_cols=41 Identities=17% Similarity=0.089 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYA 273 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 273 (436)
+.++.+|..+++.|+|++|..+.+.+++..|++..+.....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 35667777777777777777777777777777766654443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.05 Score=37.32 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
+.++.+|..++++|+ |.+|..+++.+|++.|++..+......+
T Consensus 2 d~lY~lAig~ykl~~-Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGE-YEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhh-HHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 456778888888888 8888888888888888887766544433
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.29 Score=48.26 Aligned_cols=164 Identities=17% Similarity=0.166 Sum_probs=112.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--
Q 013800 253 DYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-- 330 (436)
Q Consensus 253 ~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 330 (436)
-.+++++..-|-.+++|+.....+...+ |-+.|+...++++...|. ....++.++...++.+.....++.+++.
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~is-d~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~ 364 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGIS-DKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLK 364 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhcc-HHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHH
Confidence 3567788888888999998887766665 578888888888777776 5566666666655555555555433332
Q ss_pred -----------------------hHH-----------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013800 331 -----------------------LPI-----------------QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL 370 (436)
Q Consensus 331 -----------------------~~~-----------------~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (436)
.++ .+..-.+.|...|-++-+..-....++..-|.+-+..
T Consensus 365 r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~ 444 (660)
T COG5107 365 RKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA 444 (660)
T ss_pred HHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh
Confidence 111 1122234455555555443323345555555554444
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013800 371 HHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 371 g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (436)
.+|+.-|-..|+-.+...|+.+.....+-..+...++...|...|+.++.
T Consensus 445 ~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 445 TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 44499999999999999999998888888999999999999999996554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.49 Score=44.85 Aligned_cols=124 Identities=15% Similarity=0.097 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC-CHHHHHHHHHHHHHh----CC--
Q 013800 283 QHRALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG-DLEGAEEYFSRAILA----NP-- 354 (436)
Q Consensus 283 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~----~p-- 354 (436)
++.|..++.|+-... ..++.....++.+++..| ......+ +++.|+.++++++++ .+
T Consensus 9 ~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G---------------~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~ 73 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIG---------------KSLLSKKDKYEEAVKWLQRAYDILEKPGKMD 73 (278)
T ss_pred HHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHH---------------HHHHHcCCChHHHHHHHHHHHHHHHhhhhcc
Confidence 555555555554443 333333334444444433 4445555 677777777776665 11
Q ss_pred -CC-------HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 355 -GD-------GEIMSQYAKLVWELHH--DHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 355 -~~-------~~~~~~la~~~~~~g~--d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
.. ..++..++.++...+. ..++|...++.+-...|+.+.++...-.++...++.+++.+.+.+.+.-
T Consensus 74 ~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 74 KLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 11 2345566666666554 1223444444444445665555544445555566666666666665543
|
It is also involved in sporulation []. |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.045 Score=54.72 Aligned_cols=90 Identities=28% Similarity=0.264 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 013800 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK---KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALT 288 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~ 288 (436)
+....|+..|.+++...|+....+.++|.++++ .|+.-.|+.....|++++|....+|+.|+.++..+++ +.+|+.
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r-~~eal~ 466 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR-YLEALS 466 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh-HHHhhh
Confidence 677889999999999999999999999999886 4677788888889999999999999999999999987 999999
Q ss_pred HHHHHHHhCCCCHH
Q 013800 289 YFERAALAAPQDSN 302 (436)
Q Consensus 289 ~~~~al~~~p~~~~ 302 (436)
+...+....|.+..
T Consensus 467 ~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 467 CHWALQMSFPTDVA 480 (758)
T ss_pred hHHHHhhcCchhhh
Confidence 99988888885543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.65 E-value=3.7 Score=43.58 Aligned_cols=187 Identities=16% Similarity=0.124 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--CHH----HHHHHHHHHHHHcCC
Q 013800 214 SAEAEEYYKRMIDEYPC----HPLLLRNYAQLLQ-KKGDLYRAEDYYNHATMADPG--DGE----SWMQYAKLVWELHRD 282 (436)
Q Consensus 214 ~~~A~~~~~~al~~~P~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~~~----~~~~la~~~~~~~~d 282 (436)
...|+.+++-+++..+- .+.+++.+|.+++ ...++++|+.++.+++.+... ..+ ....++.++...+
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~-- 114 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTN-- 114 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcC--
Confidence 35677788777753221 2367889999998 799999999999999887643 222 3345677777664
Q ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC--CCCHHH
Q 013800 283 QHRALTYFERAALAAPQ-DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN--PGDGEI 359 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~ 359 (436)
...|...++++++...+ ....|...-.++.. ......+++..|++.++...... ..++.+
T Consensus 115 ~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~-----------------~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 115 PKAALKNLDKAIEDSETYGHSAWYYAFRLLKI-----------------QLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHH-----------------HHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 45599999999987655 22223222222211 22333389999999999988775 355443
Q ss_pred H----HHHHHHHHHhcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHH--HHHHCCChHHHHHHHHHHHh
Q 013800 360 M----SQYAKLVWELHHDHDKALCYFERAVQASP----------ADSHVLAAYAC--FLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 360 ~----~~la~~~~~~g~d~~~A~~~~~~al~~~p----------~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~ 420 (436)
. ...+.+....+. .+++++.++++..... ....+|..+-. +....|+++.+...+++...
T Consensus 178 ~v~~~l~~~~l~l~~~~-~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGS-PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 223444555666 6788888887744321 12345555544 35667777777776665544
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.47 Score=45.10 Aligned_cols=188 Identities=15% Similarity=0.067 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013800 214 SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERA 293 (436)
Q Consensus 214 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~a 293 (436)
-++|+.+=+-.+.+-|..++++-.++.++++..+...=...=-..+-+...+...|.. .- .+++...+.++
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r--------~l-I~eg~all~rA 282 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDR--------AL-IDEGLALLDRA 282 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhH--------HH-HHHHHHHHHHH
Confidence 4678888888888888888888777777665332221110000111122223333322 21 67888888888
Q ss_pred HHhCC-CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 013800 294 ALAAP-QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH 372 (436)
Q Consensus 294 l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 372 (436)
+.... .-....-.++.+... .-....-+|..-..+|.-...+.|. +.+-.|.+.+..+...
T Consensus 283 ~~~~~pGPYqlqAAIaa~HA~-----------------a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~G 344 (415)
T COG4941 283 LASRRPGPYQLQAAIAALHAR-----------------ARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREG 344 (415)
T ss_pred HHcCCCChHHHHHHHHHHHHh-----------------hcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhh
Confidence 87653 333333333322221 1122345788878888877777776 6677778888887777
Q ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHH
Q 013800 373 DHDKALCYFERAVQA--SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAV 429 (436)
Q Consensus 373 d~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~ 429 (436)
.+.++...+..... -.+....+...|.++.++|+.++|...|++++.+.++-.+..
T Consensus 345 -p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~ 402 (415)
T COG4941 345 -PAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERA 402 (415)
T ss_pred -HHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHH
Confidence 78888887766554 233456678889999999999999999999999987765543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=95.63 E-value=1.6 Score=44.04 Aligned_cols=178 Identities=12% Similarity=0.059 Sum_probs=115.5
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
++...-.++-..-++.+++.... +..+++.++++|... ..++-...+++.++.+-++...-..++..|.. . +...+
T Consensus 75 ~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-i-k~sk~ 150 (711)
T COG1747 75 IFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-I-KKSKA 150 (711)
T ss_pred HhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-h-chhhH
Confidence 34444445555666777777654 677888899999887 66777788888888888888888888876655 3 37888
Q ss_pred HHHHHHHHHhC-C--CCH---HHHHHHHHHHHHccC-chHHHHHHHHHHHH--------------hHHHHcCCHHHHHHH
Q 013800 287 LTYFERAALAA-P--QDS---NILAAYACFLWEMED-DGEDDKAQEEHIQV--------------LPIQSKGDLEGAEEY 345 (436)
Q Consensus 287 ~~~~~~al~~~-p--~~~---~~~~~la~~~~~~g~-~~~A~~~~~~~~~~--------------~~~~~~g~~~~A~~~ 345 (436)
..+|.+++..- | +++ ++|..+- ...|+ .+.-.....+.-.. .-|....+|.+|++.
T Consensus 151 a~~f~Ka~yrfI~~~q~~~i~evWeKL~---~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~I 227 (711)
T COG1747 151 AEFFGKALYRFIPRRQNAAIKEVWEKLP---ELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRI 227 (711)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHH---HhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHH
Confidence 88888887542 2 122 2222222 11111 12222211111111 445667899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHH-------------------hcCCHHHHHHHHHHHHHhCCCC
Q 013800 346 FSRAILANPGDGEIMSQYAKLVWE-------------------LHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~-------------------~g~d~~~A~~~~~~al~~~p~~ 391 (436)
+...++.+..+..+.-++...+.. .|+++.+++..|++.+-.+..+
T Consensus 228 lk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 228 LKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 999999999988888777766654 2445778888888777665544
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.46 Score=46.74 Aligned_cols=138 Identities=9% Similarity=0.034 Sum_probs=80.9
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH--cCCHHHHHHHHHH-HHHh---CCCC---HHHHHHH
Q 013800 293 AALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS--KGDLEGAEEYFSR-AILA---NPGD---GEIMSQY 363 (436)
Q Consensus 293 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--~g~~~~A~~~~~~-al~~---~p~~---~~~~~~l 363 (436)
.++.+|-+.+++..++.++..+|+...|.+.+++++-. +.. ...+..-...... ..++ .+.| ..+++..
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~--~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~ 109 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA--FERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRY 109 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHH
Confidence 45678999999999996555555555555555443321 000 0000000000000 0000 1222 2356677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHH-HHHHHHHHHCCChHHHHHHHHHHHh--------hCCCChhHHhhhh
Q 013800 364 AKLVWELHHDHDKALCYFERAVQASPA-DSHVL-AAYACFLWETEEDEDDSKSSDQFQQ--------VAPIRQGAVTTAN 433 (436)
Q Consensus 364 a~~~~~~g~d~~~A~~~~~~al~~~p~-~~~~~-~~la~~~~~~g~~~~A~~~~~~al~--------l~p~~~~a~~~an 433 (436)
...+.+.|- +..|.++++-.+.++|. |+... ..+-....+.++++--++.++.... .-|++.-+..+|.
T Consensus 110 i~~L~~RG~-~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 110 IQSLGRRGC-WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHHHhcCc-HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence 778889999 99999999999999999 77544 4444455667777777777776544 3466666555443
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.52 E-value=1.1 Score=45.69 Aligned_cols=92 Identities=13% Similarity=0.059 Sum_probs=65.2
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPG-DGEIMSQYAKLVWELHHDHDKALCYFERA-----VQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~d~~~A~~~~~~a-----l~~~p~~~~~~~~la~~~~~ 404 (436)
..+.+.|-|..|.++++-.+.++|. ||-+...+...|.-..++|+=-++.++.. +..-|+.+. -..+|.+|..
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~y-S~AlA~f~l~ 428 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGY-SLALARFFLR 428 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchH-HHHHHHHHHh
Confidence 5566789999999999999999998 88777777777665555476666666554 334455332 2455666666
Q ss_pred CCC---hHHHHHHHHHHHhhCC
Q 013800 405 TEE---DEDDSKSSDQFQQVAP 423 (436)
Q Consensus 405 ~g~---~~~A~~~~~~al~l~p 423 (436)
... -+.|...+.+|+.+.|
T Consensus 429 ~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred cCChhhHHHHHHHHHHHHHhCc
Confidence 655 4668888888888776
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.023 Score=33.19 Aligned_cols=29 Identities=38% Similarity=0.507 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADP 263 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 263 (436)
+..+|.++...+++++|+..|+++++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44444455555555555555544444443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.49 E-value=1.6 Score=41.54 Aligned_cols=174 Identities=14% Similarity=0.029 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------------CC--H
Q 013800 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP-----------------------GD--G 266 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----------------------~~--~ 266 (436)
.+..+-++.-..+++++|+.+.+|..+|.- ...-..+|+..++++++... .+ .
T Consensus 198 Rnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~ 275 (556)
T KOG3807|consen 198 RNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLV 275 (556)
T ss_pred cCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhh
Confidence 444556666677777888777777766642 22234566666666655311 11 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHH
Q 013800 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQD--SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEE 344 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~ 344 (436)
.+-..+|.|-.++|+ ..+|++.++...+-.|-. ..++-++...+.+..-+.+....+ .-|........|.-
T Consensus 276 YIKRRLAMCARklGr-lrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL------akYDdislPkSA~i 348 (556)
T KOG3807|consen 276 YIKRRLAMCARKLGR-LREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL------AKYDDISLPKSAAI 348 (556)
T ss_pred HHHHHHHHHHHHhhh-HHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhccccCcchHHH
Confidence 234567777777775 888888888887776632 223344444444433332222222 11222333334444
Q ss_pred HHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 345 YFSRAILA-----NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYA 399 (436)
Q Consensus 345 ~~~~al~~-----~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la 399 (436)
+|..|+-. +.-.++.-...|..-. -..|++.+.+|++.+|.-+..+..+-
T Consensus 349 cYTaALLK~RAVa~kFspd~asrRGLS~A-----E~~AvEAihRAvEFNPHVPkYLLE~k 403 (556)
T KOG3807|consen 349 CYTAALLKTRAVSEKFSPETASRRGLSTA-----EINAVEAIHRAVEFNPHVPKYLLEMK 403 (556)
T ss_pred HHHHHHHHHHHHHhhcCchhhhhccccHH-----HHHHHHHHHHHhhcCCCCcHHHHHHH
Confidence 44444321 1111222222222211 24678888889999888776655543
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.44 E-value=1.8 Score=46.45 Aligned_cols=192 Identities=16% Similarity=0.079 Sum_probs=116.5
Q ss_pred hHhhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C--HHHHHH
Q 013800 203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG----D--GESWMQ 271 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~--~~~~~~ 271 (436)
..|.+....|++++|+++.+.++..-|.+. .++..+|.+..-.|++++|..+..++.+.... . ..+...
T Consensus 463 L~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~ 542 (894)
T COG2909 463 LRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQ 542 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 346678889999999999999999887654 56788899999999999999999999887332 2 223344
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHH
Q 013800 272 YAKLVWELHR-DQHRALTYFERAA----LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYF 346 (436)
Q Consensus 272 la~~~~~~~~-d~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~ 346 (436)
.+.++...|. -+.+.+..|...- ...|-........+.++ +.+.+ ++.+..-.
T Consensus 543 ~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll-------------------~~~~r---~~~~~~ea 600 (894)
T COG2909 543 QSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLL-------------------RAWLR---LDLAEAEA 600 (894)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH-------------------HHHHH---HhhhhHHh
Confidence 4666666651 0333333333332 22333333333344332 22222 44444444
Q ss_pred HHHHHh----CCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---H--HHHHHHHH--HHHHCCChHHHH
Q 013800 347 SRAILA----NPGDG---EIMSQYAKLVWELHHDHDKALCYFERAVQASPAD---S--HVLAAYAC--FLWETEEDEDDS 412 (436)
Q Consensus 347 ~~al~~----~p~~~---~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~---~--~~~~~la~--~~~~~g~~~~A~ 412 (436)
..++++ .|... -+++.|+.+.+..|+ +++|...+.....+.-.. . .+...... ....+|+.++|.
T Consensus 601 r~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gd-l~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~ 679 (894)
T COG2909 601 RLGIEVGSVYTPQPLLSRLALSMLAELEFLRGD-LDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAA 679 (894)
T ss_pred hhcchhhhhcccchhHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHH
Confidence 444443 23222 223578999999999 999999998876653222 1 11122222 233567777776
Q ss_pred HHHHH
Q 013800 413 KSSDQ 417 (436)
Q Consensus 413 ~~~~~ 417 (436)
....+
T Consensus 680 ~~l~~ 684 (894)
T COG2909 680 EWLLK 684 (894)
T ss_pred HHHHh
Confidence 65554
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.38 E-value=1.5 Score=51.66 Aligned_cols=212 Identities=13% Similarity=0.112 Sum_probs=126.7
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHHcCCHHH
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK-LVWELHRDQHR 285 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~~~d~~~ 285 (436)
.....|+++.|..+|+++++.+|+....+...-...+..|.++..+...+-.....++...-|+.++. +-|..+. |+.
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~q-wD~ 1536 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQ-WDL 1536 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcc-hhh
Confidence 44567888888999999988888877777777777777888888887777666666665555555542 2244432 554
Q ss_pred HHHHHH-------------HH-HHhCCCCHHHHH-H-------HHHHHHHccCchHHHHHHHHHHHH-------------
Q 013800 286 ALTYFE-------------RA-ALAAPQDSNILA-A-------YACFLWEMEDDGEDDKAQEEHIQV------------- 330 (436)
Q Consensus 286 A~~~~~-------------~a-l~~~p~~~~~~~-~-------la~~~~~~g~~~~A~~~~~~~~~~------------- 330 (436)
-..+.- ++ +.....|..+-. . .+.-+...+........|+-..+.
T Consensus 1537 ~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l 1616 (2382)
T KOG0890|consen 1537 LESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEEL 1616 (2382)
T ss_pred hhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 443321 11 111111111110 0 000011111111111111100000
Q ss_pred ---------------h--HHHHcCC---HHHHHHHHHHHHH---hCC----CCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013800 331 ---------------L--PIQSKGD---LEGAEEYFSRAIL---ANP----GDGEIMSQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 331 ---------------~--~~~~~g~---~~~A~~~~~~al~---~~p----~~~~~~~~la~~~~~~g~d~~~A~~~~~~ 383 (436)
+ -....+. ..+-+-.+++++. ++| .-.+.|...|++....|+ ++.|..++-+
T Consensus 1617 ~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~-~q~A~nall~ 1695 (2382)
T KOG0890|consen 1617 KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH-LQRAQNALLN 1695 (2382)
T ss_pred hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc-HHHHHHHHHh
Confidence 0 1111111 2233333444432 232 347899999999999999 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 384 AVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 384 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
|.+..+ +.++...|+.++.+|+...|+.++++.++++
T Consensus 1696 A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1696 AKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 988874 5889999999999999999999999999764
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.03 Score=32.63 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 359 IMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
++..+|.++..+++ +++|+..+++++++.|.
T Consensus 3 ~~~~~a~~~~~~~~-~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGD-YDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHHHHHccCCC
Confidence 45556666666666 66666666666655553
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.037 Score=49.66 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=54.5
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG 266 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 266 (436)
...+.++.+.|.+.|.+++++.|+...-|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 445668999999999999999999999999999999999999999999999999999863
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.22 Score=45.13 Aligned_cols=70 Identities=21% Similarity=0.258 Sum_probs=46.3
Q ss_pred hHHHHcCC-------HHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHH
Q 013800 331 LPIQSKGD-------LEGAEEYFSRAILANP------GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-HVLA 396 (436)
Q Consensus 331 ~~~~~~g~-------~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~-~~~~ 396 (436)
++|...|+ +.+|...|.++++... +...+++.+|.+..+.|+ +++|+++|.+++....... ..+.
T Consensus 126 WlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~-~~eA~~~fs~vi~~~~~s~~~~l~ 204 (214)
T PF09986_consen 126 WLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGN-YDEAKRWFSRVIGSKKASKEPKLK 204 (214)
T ss_pred HHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHcCCCCCCcHHHH
Confidence 55555555 3456666666665432 235678889999999999 9999999999987543332 3445
Q ss_pred HHHHH
Q 013800 397 AYACF 401 (436)
Q Consensus 397 ~la~~ 401 (436)
.+|.=
T Consensus 205 ~~AR~ 209 (214)
T PF09986_consen 205 DMARD 209 (214)
T ss_pred HHHHH
Confidence 55543
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.046 Score=51.20 Aligned_cols=88 Identities=13% Similarity=0.182 Sum_probs=54.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 221 YKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD 300 (436)
Q Consensus 221 ~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~ 300 (436)
|.++....|.++..|..++....+.|-|.+--..|.++++.+|.+.+.|.--+..-+....+++.+...|.++++.+|+.
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 44444555666666666666666666666666677777777777766666533333333334666777777777777776
Q ss_pred HHHHHHHH
Q 013800 301 SNILAAYA 308 (436)
Q Consensus 301 ~~~~~~la 308 (436)
+..|..+-
T Consensus 176 p~iw~eyf 183 (435)
T COG5191 176 PRIWIEYF 183 (435)
T ss_pred chHHHHHH
Confidence 66665443
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.04 E-value=3.4 Score=39.47 Aligned_cols=176 Identities=11% Similarity=-0.019 Sum_probs=102.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH-
Q 013800 244 KKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK- 322 (436)
Q Consensus 244 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~- 322 (436)
+..+..+-+.....+++++|+.+.++..+|.--.. -..+|.+.++++++..... ++..+.....|...+|..
T Consensus 196 RERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~---Ti~~AE~l~k~ALka~e~~----yr~sqq~qh~~~~~da~~r 268 (556)
T KOG3807|consen 196 RERNPPARIKAAYQALEINNECATAYVLLAEEEAT---TIVDAERLFKQALKAGETI----YRQSQQCQHQSPQHEAQLR 268 (556)
T ss_pred HhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhh---hHHHHHHHHHHHHHHHHHH----HhhHHHHhhhccchhhhhh
Confidence 33445556677788999999999999988854332 2788999999998764321 111222222222222221
Q ss_pred ---HHHHHHHH---hHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHH
Q 013800 323 ---AQEEHIQV---LPIQSKGDLEGAEEYFSRAILANPGD--GEIMSQYAKLVWELHHDHDKALCYFERAVQAS-PADSH 393 (436)
Q Consensus 323 ---~~~~~~~~---~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~-p~~~~ 393 (436)
...-|+++ .+..++|+..+|++.++...+-.|-. ..+.-+|-.++..+.- |.+....+.+.-++. |....
T Consensus 269 RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QA-YADvqavLakYDdislPkSA~ 347 (556)
T KOG3807|consen 269 RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQA-YADVQAVLAKYDDISLPKSAA 347 (556)
T ss_pred cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccccCcchHH
Confidence 11233333 77788999999999999988877732 2344566666666555 555554444433322 44333
Q ss_pred HHHHHHHH-------------HHHCCC---hHHHHHHHHHHHhhCCCChh
Q 013800 394 VLAAYACF-------------LWETEE---DEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 394 ~~~~la~~-------------~~~~g~---~~~A~~~~~~al~l~p~~~~ 427 (436)
+.+.-+.+ -.+.|- ...|++...++.+.+|+.+.
T Consensus 348 icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 348 ICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPK 397 (556)
T ss_pred HHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcH
Confidence 33222211 111111 23478889999999987654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.94 Score=45.84 Aligned_cols=170 Identities=17% Similarity=0.037 Sum_probs=94.9
Q ss_pred hhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 013800 209 PNFDDSAEAEEYYKRMIDEYPCH-PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRAL 287 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~ 287 (436)
...++++++..+.+.. ++-|.- .......+..+.++|-++.|+... .|+...+.|| .+.|+ ++.|.
T Consensus 272 v~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~-L~~A~ 338 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGN-LDIAL 338 (443)
T ss_dssp HHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT--HHHHH
T ss_pred HHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCC-HHHHH
Confidence 4457788876666421 111222 344667778888899888887754 3556666666 45553 66666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 288 TYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLV 367 (436)
Q Consensus 288 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 367 (436)
+..++ -+++..|..|| .....+|+++-|+++|+++- -+..|..+|
T Consensus 339 ~~a~~-----~~~~~~W~~Lg----------------------~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy 383 (443)
T PF04053_consen 339 EIAKE-----LDDPEKWKQLG----------------------DEALRQGNIELAEECYQKAK--------DFSGLLLLY 383 (443)
T ss_dssp HHCCC-----CSTHHHHHHHH----------------------HHHHHTTBHHHHHHHHHHCT---------HHHHHHHH
T ss_pred HHHHh-----cCcHHHHHHHH----------------------HHHHHcCCHHHHHHHHHhhc--------CccccHHHH
Confidence 54432 34778999999 78888899999999888752 244556666
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHhhhhhcC
Q 013800 368 WELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVTTANVYA 436 (436)
Q Consensus 368 ~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~an~ya 436 (436)
.-.|+ .+.-.++...+..... +...-.+++.+|+.++.++.+.++- .+++|+..|..|+
T Consensus 384 ~~~g~-~~~L~kl~~~a~~~~~-----~n~af~~~~~lgd~~~cv~lL~~~~----~~~~A~~~A~ty~ 442 (443)
T PF04053_consen 384 SSTGD-REKLSKLAKIAEERGD-----INIAFQAALLLGDVEECVDLLIETG----RLPEAALFARTYG 442 (443)
T ss_dssp HHCT--HHHHHHHHHHHHHTT------HHHHHHHHHHHT-HHHHHHHHHHTT-----HHHHHHHHHHTT
T ss_pred HHhCC-HHHHHHHHHHHHHccC-----HHHHHHHHHHcCCHHHHHHHHHHcC----CchHHHHHHHhcC
Confidence 77777 5444444444433322 1222234555677777766555443 3356666666653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.43 Score=47.49 Aligned_cols=126 Identities=15% Similarity=0.115 Sum_probs=79.5
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 013800 210 NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTY 289 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~ 289 (436)
..|+.-.|-..+..++...|.++......+.+...+|+|+.|...+..+-..-.....+...+-.-++.+++ +++|...
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r-~~~a~s~ 379 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR-WREALST 379 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh-HHHHHHH
Confidence 446666676777777777777777777777777777777777776665544433333333333344455554 6776666
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 290 FERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 290 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
-.-.+.-.-+++++...-+ .....+|-++++..++++.+.++|....
T Consensus 380 a~~~l~~eie~~ei~~iaa----------------------~sa~~l~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAA----------------------GSADALQLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHhccccCChhheeeec----------------------ccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence 6655554444554443333 3445678889999999999998876433
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.74 E-value=4.1 Score=41.73 Aligned_cols=157 Identities=14% Similarity=0.101 Sum_probs=99.5
Q ss_pred hCCCHHHHHHHHHHHHHhC------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------
Q 013800 210 NFDDSAEAEEYYKRMIDEY------------PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA---------------- 261 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------------- 261 (436)
....|++|...|.-++... |-+.+.+..++.+...+|+.+-|....++++-.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 3456888998888887753 556788999999999999998887777777642
Q ss_pred -----CCCCHHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH
Q 013800 262 -----DPGDGESWMQYA---KLVWELHRDQHRALTYFERAALAAPQ-DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332 (436)
Q Consensus 262 -----~p~~~~~~~~la---~~~~~~~~d~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 332 (436)
.|.+...|..+- ..+... |-+.-|.++++-.+.++|. ++.....+...+
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~R-GC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~--------------------- 387 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQR-GCWRTALEWCKLLLSLDPSEDPLGILYLIDIY--------------------- 387 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCcCCchhHHHHHHHH---------------------
Confidence 233333333322 222233 4589999999999999998 877666555322
Q ss_pred HHHcCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCC
Q 013800 333 IQSKGDLEGAEEYFSRA-----ILANPGDGEIMSQYAKLVWELHH--DHDKALCYFERAVQASP 389 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~a-----l~~~p~~~~~~~~la~~~~~~g~--d~~~A~~~~~~al~~~p 389 (436)
..+..+|+--|+.++.. +..-|+. ..-..+|..|..... +-+.|...+.+|+...|
T Consensus 388 ALrareYqwiI~~~~~~e~~n~l~~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 388 ALRAREYQWIIELSNEPENMNKLSQLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHhHHHHHHHHHHHHhhccHhhcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 33455666666665555 2233442 222234444444333 14567778888887766
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.62 E-value=3.1 Score=43.07 Aligned_cols=90 Identities=8% Similarity=0.067 Sum_probs=78.4
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
.-.++..+|..++++|...+..-|.| .....+++.||..+.+ .++|.+++++|-+.+|.++-....+-.+...
T Consensus 362 ~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~Q-LD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~ 440 (872)
T KOG4814|consen 362 KKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQ-LDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA 440 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 56778899999999999999876654 5677889999999999 9999999999999999999888888888889
Q ss_pred CCChHHHHHHHHHHHhh
Q 013800 405 TEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 405 ~g~~~~A~~~~~~al~l 421 (436)
.|.-++|+.+.......
T Consensus 441 E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 441 EDKSEEALTCLQKIKSS 457 (872)
T ss_pred hcchHHHHHHHHHHHhh
Confidence 99999999888776654
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.13 Score=51.49 Aligned_cols=103 Identities=13% Similarity=-0.080 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH--RDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
+.+.+..-|.-.+..+....|+..|.+++...|.....+.+++.++.+.+ +|.-.|+.....|++++|....+|+.|+
T Consensus 373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la 452 (758)
T KOG1310|consen 373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA 452 (758)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence 34444444444444555666666666766666666666666666655543 1334566666666666666666666666
Q ss_pred HHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 309 CFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
.++..++++.+|+.+...+....|.
T Consensus 453 ----------------------~aL~el~r~~eal~~~~alq~~~Pt 477 (758)
T KOG1310|consen 453 ----------------------RALNELTRYLEALSCHWALQMSFPT 477 (758)
T ss_pred ----------------------HHHHHHhhHHHhhhhHHHHhhcCch
Confidence 5555666666666666555555553
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.72 Score=38.80 Aligned_cols=77 Identities=14% Similarity=0.015 Sum_probs=64.1
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEED 408 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 408 (436)
..-...++.+++...+...--+.|+.+++-..-|+++...|+ |.+|+..|+...+-.+..+.....++.|+.-+|+.
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~-w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGN-YDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCC-HHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 444557889999888888888899999999999999999999 99999999998887777777777777777777764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.47 E-value=1 Score=46.86 Aligned_cols=89 Identities=17% Similarity=0.056 Sum_probs=50.4
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 293 AALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVW 368 (436)
Q Consensus 293 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 368 (436)
....-|++...+-.+|..+...|.-++|.+.+.+.-.. .....+++|.+|+++.++-- -|.-.......+.-+.
T Consensus 844 la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll 921 (1189)
T KOG2041|consen 844 LARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLL 921 (1189)
T ss_pred HHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHH
Confidence 34445788888888888888888777777655432211 44455566666666544321 1221222223333444
Q ss_pred HhcCCHHHHHHHHHHH
Q 013800 369 ELHHDHDKALCYFERA 384 (436)
Q Consensus 369 ~~g~d~~~A~~~~~~a 384 (436)
..++ ..+|++..+++
T Consensus 922 ~~~~-~~eaIe~~Rka 936 (1189)
T KOG2041|consen 922 ADAN-HMEAIEKDRKA 936 (1189)
T ss_pred hhcc-hHHHHHHhhhc
Confidence 5556 67777777766
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.052 Score=48.73 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=48.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
..+.++.+.|.+.|.+++++.|+....|+.+|....+.|+ ++.|.+.|++.++++|.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~-~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGE-FDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhccc-HHHHHHHHHHHHcCCcccc
Confidence 3456788888888888888888888888888888888888 8888888888888888764
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=94.32 E-value=1.1 Score=47.06 Aligned_cols=74 Identities=22% Similarity=0.159 Sum_probs=36.0
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCChH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-HVLAAYACFLWETEEDE 409 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~ 409 (436)
.-|...|+|+.|.++|.++- ....-...|.+.|+ |.+|.++-++.. .|... ..|...+.-+-+.|++.
T Consensus 773 dhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~k-w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~ 841 (1636)
T KOG3616|consen 773 DHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGK-WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFA 841 (1636)
T ss_pred HHhccchhHHHHHHHHHhcc--------hhHHHHHHHhcccc-HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchh
Confidence 44455566666666665431 11122234445556 666655544432 23322 33444455566666666
Q ss_pred HHHHHH
Q 013800 410 DDSKSS 415 (436)
Q Consensus 410 ~A~~~~ 415 (436)
+|.+.|
T Consensus 842 eaeqly 847 (1636)
T KOG3616|consen 842 EAEQLY 847 (1636)
T ss_pred hhhhee
Confidence 555444
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.28 Score=48.75 Aligned_cols=149 Identities=11% Similarity=0.062 Sum_probs=97.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHH
Q 013800 281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~ 348 (436)
||.-.|-.-+..+++..|.++......+.+...+|.++.+.+.+...-+. +....+|+|++|.....-
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~ 382 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEM 382 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHH
Confidence 36788888888889999999988888887777777777777766533332 455567788888777777
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHCCC-hHHHHHHHHHHHhhCCCC
Q 013800 349 AILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAY--ACFLWETEE-DEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 349 al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~l--a~~~~~~g~-~~~A~~~~~~al~l~p~~ 425 (436)
.+...-+++++...-+....++|- ++++..++++.+.++|.....|.+. ..-|+..|+ +.+|...--+...++..|
T Consensus 383 ~l~~eie~~ei~~iaa~sa~~l~~-~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (831)
T PRK15180 383 MLSNEIEDEEVLTVAAGSADALQL-FDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGNAFSEAFHAGIQSQRLNDTF 461 (831)
T ss_pred HhccccCChhheeeecccHHHHhH-HHHHHHHHHHHhccCChhcccceeeeccceeccCcchHHHHHHhhhhhhhhhHHH
Confidence 776666667766666666666667 7888888888887776644333332 223444443 445544444445555555
Q ss_pred hhHHh
Q 013800 426 QGAVT 430 (436)
Q Consensus 426 ~~a~~ 430 (436)
-+.+.
T Consensus 462 ~~~~~ 466 (831)
T PRK15180 462 METAL 466 (831)
T ss_pred HHHHH
Confidence 55443
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.30 E-value=2.8 Score=41.20 Aligned_cols=172 Identities=14% Similarity=0.117 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013800 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQK------------KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d 282 (436)
.++++.=.+.+..+|+...+|...=.++.. +.-.++-+.+...+++.+|+.-.+|+.+..++......
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 467777777888888877666544333321 22456778888899999999999999999998876654
Q ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013800 283 -QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 283 -~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 361 (436)
+..-++.++++++.+|.+-.+|...=.+... .-.......+=+++..++|..++.|..+|.
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~------------------~~~~~~~~~~El~ftt~~I~~nfSNYsaWh 187 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQ------------------AERSRNLEKEELEFTTKLINDNFSNYSAWH 187 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHH------------------HhcccccchhHHHHHHHHHhccchhhhHHH
Confidence 7889999999999999988887544322211 111122356678888999999999999999
Q ss_pred HHHHHHHHhcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 362 QYAKLVWELHHD-----------HDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 362 ~la~~~~~~g~d-----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
+...++-.+-.+ ...-++.-..|+-.+|++..+|+..-+++-+
T Consensus 188 yRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 188 YRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred HHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 988877532110 2334455566677789998887765544433
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=94.27 E-value=1.8 Score=34.91 Aligned_cols=56 Identities=20% Similarity=0.212 Sum_probs=35.8
Q ss_pred hHHHHcCCHHHHHH-------HHHHHHHhCCCCHHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 331 LPIQSKGDLEGAEE-------YFSRAILANPGDGEIM----SQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 331 ~~~~~~g~~~~A~~-------~~~~al~~~p~~~~~~----~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
..+..+|+|++++. +|.+-=+++.+....| ++.|.++..+|+ .++|+..|+.+.+.
T Consensus 63 ~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr-~~eA~~~fr~agEM 129 (144)
T PF12968_consen 63 GALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGR-KEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHH
Confidence 44445555555444 4444445566665554 578888999999 99999999998653
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.64 Score=40.81 Aligned_cols=102 Identities=19% Similarity=0.132 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG---DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ--DSNILAAY 307 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~--~~~~~~~l 307 (436)
.++..+|..|.+.|++++|++.|.++...... -.+.+..+..+....+ |+.....++.++-.+... +.....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~-d~~~v~~~i~ka~~~~~~~~d~~~~n-- 113 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFG-DWSHVEKYIEKAESLIEKGGDWERRN-- 113 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhccchHHHHH--
Confidence 56677888888888888888888887665433 2345566666666665 488887777777655332 222211
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC
Q 013800 308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN 353 (436)
Q Consensus 308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 353 (436)
.+-...| ..+...++|.+|...|-.++.-.
T Consensus 114 -rlk~~~g---------------L~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 114 -RLKVYEG---------------LANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred -HHHHHHH---------------HHHHHhchHHHHHHHHHccCcCC
Confidence 1111111 66667899999998887765443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.44 Score=52.92 Aligned_cols=148 Identities=18% Similarity=0.124 Sum_probs=107.7
Q ss_pred HHHHHHH-HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHH
Q 013800 216 EAEEYYK-RMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA--------DPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 216 ~A~~~~~-~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
+++.++. ..-...|+....|..++.++...+++++|+.+-.++.-+ .|+....+.+++...+.... ...|
T Consensus 956 ~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~-~~~a 1034 (1236)
T KOG1839|consen 956 ESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKN-LSGA 1034 (1236)
T ss_pred hhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccC-ccch
Confidence 3334666 444568889999999999999999999999998887654 34556778888877777664 8889
Q ss_pred HHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC----
Q 013800 287 LTYFERAALAA--------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP---- 354 (436)
Q Consensus 287 ~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p---- 354 (436)
+..+.++..+. |.-.....++. .++...++++.|+.+.+.|+..+.
T Consensus 1035 l~~~~ra~~l~~Ls~ge~hP~~a~~~~nle----------------------~l~~~v~e~d~al~~le~A~a~~~~v~g 1092 (1236)
T KOG1839|consen 1035 LKSLNRALKLKLLSSGEDHPPTALSFINLE----------------------LLLLGVEEADTALRYLESALAKNKKVLG 1092 (1236)
T ss_pred hhhHHHHHHhhccccCCCCCchhhhhhHHH----------------------HHHhhHHHHHHHHHHHHHHHHHHhhhcC
Confidence 99998888763 33344445666 666677889999999999988642
Q ss_pred ----CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 355 ----GDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 355 ----~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
.....+..++++...+++ +..|+...+..+.+
T Consensus 1093 ~~~l~~~~~~~~~a~l~~s~~d-fr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1093 PKELETALSYHALARLFESMKD-FRNALEHEKVTYGI 1128 (1236)
T ss_pred ccchhhhhHHHHHHHHHhhhHH-HHHHHHHHhhHHHH
Confidence 234556667777777777 77777776666543
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=94.14 E-value=1.3 Score=40.12 Aligned_cols=96 Identities=21% Similarity=0.130 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhCC--C----CHHHHHH
Q 013800 212 DDSAEAEEYYKRMIDE----YPCH---PLLLRNYAQLLQKKGDLY-------RAEDYYNHATMADP--G----DGESWMQ 271 (436)
Q Consensus 212 g~~~~A~~~~~~al~~----~P~~---~~~~~~la~~~~~~g~~~-------~A~~~~~~al~~~p--~----~~~~~~~ 271 (436)
..+++|++.|.-|+-. ..+. +..+..+|.+|..+|+.+ .|.+.|.++++... . ...+.+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 5678888888877652 2222 467889999999999854 45555555555432 1 2567888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHH
Q 013800 272 YAKLVWELHRDQHRALTYFERAALAAPQDS-NILAAYA 308 (436)
Q Consensus 272 la~~~~~~~~d~~~A~~~~~~al~~~p~~~-~~~~~la 308 (436)
+|.+....|+ +++|..+|.+++....... ..+..++
T Consensus 171 igeL~rrlg~-~~eA~~~fs~vi~~~~~s~~~~l~~~A 207 (214)
T PF09986_consen 171 IGELNRRLGN-YDEAKRWFSRVIGSKKASKEPKLKDMA 207 (214)
T ss_pred HHHHHHHhCC-HHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 9999999985 9999999999998654433 4445555
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.12 Score=48.47 Aligned_cols=92 Identities=13% Similarity=0.187 Sum_probs=74.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HH
Q 013800 287 LTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQY-AK 365 (436)
Q Consensus 287 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~ 365 (436)
+-.|.++...-|+++..|..++ ..-.+.|-+.+.-..|.+++..+|.+++.|..- +.
T Consensus 93 ~f~~~R~tnkff~D~k~w~~y~----------------------~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~ 150 (435)
T COG5191 93 IFELYRSTNKFFNDPKIWSQYA----------------------AYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAF 150 (435)
T ss_pred eEeeehhhhcCCCCcHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccc
Confidence 3345566667788999998888 555667788889999999999999999999874 44
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 366 LVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 366 ~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
-+...++ ++.+...|.+++..+|+++.+|..+-..
T Consensus 151 e~~~~an-i~s~Ra~f~~glR~N~~~p~iw~eyfr~ 185 (435)
T COG5191 151 ELFEIAN-IESSRAMFLKGLRMNSRSPRIWIEYFRM 185 (435)
T ss_pred hhhhhcc-HHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence 4556667 9999999999999999999888766544
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.96 E-value=3.8 Score=35.53 Aligned_cols=140 Identities=13% Similarity=0.102 Sum_probs=84.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013800 244 KKGDLYRAEDYYNHATMADPGD--GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 244 ~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
..+..++|+..|...-+..-.. ..+.+..|.+....+ +...|+..|..+-...|- +.....++.+-..
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kg-dta~AV~aFdeia~dt~~-P~~~rd~ARlraa-------- 139 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKG-DTAAAVAAFDEIAADTSI-PQIGRDLARLRAA-------- 139 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcc-cHHHHHHHHHHHhccCCC-cchhhHHHHHHHH--------
Confidence 4566777777777666554432 234455565555554 588888888877655432 2222222221111
Q ss_pred HHHHHHHHHhHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 322 KAQEEHIQVLPIQSKGDLEGAEEYFSRAI-LANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 322 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~ 400 (436)
.++...|-|++.....+..- ..+|--..+.-.||..-++.|+ +.+|...|.+... +...+....+.++
T Consensus 140 ---------~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd-~a~A~~~F~qia~-Da~aprnirqRAq 208 (221)
T COG4649 140 ---------YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD-FAKAKSWFVQIAN-DAQAPRNIRQRAQ 208 (221)
T ss_pred ---------HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc-hHHHHHHHHHHHc-cccCcHHHHHHHH
Confidence 66677788887666554431 2244445677788888899999 9999999988766 4444555566665
Q ss_pred HHHH
Q 013800 401 FLWE 404 (436)
Q Consensus 401 ~~~~ 404 (436)
+...
T Consensus 209 ~mld 212 (221)
T COG4649 209 IMLD 212 (221)
T ss_pred HHHH
Confidence 5443
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.93 E-value=2.3 Score=41.69 Aligned_cols=139 Identities=11% Similarity=0.073 Sum_probs=106.5
Q ss_pred HHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 243 QKKGDL-YRAEDYYNHATMADPGDGESWMQYAKLVWELHR-----------DQHRALTYFERAALAAPQDSNILAAYACF 310 (436)
Q Consensus 243 ~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-----------d~~~A~~~~~~al~~~p~~~~~~~~la~~ 310 (436)
...|.+ .++++.-.+.+..+|+...+|...-.++....- -+++-+.+.+.+++.+|+...+|+...
T Consensus 39 r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~-- 116 (421)
T KOG0529|consen 39 REAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRK-- 116 (421)
T ss_pred HhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHH--
Confidence 344444 467777788888899887777654444332211 246678888999999999999999999
Q ss_pred HHHccCchHHHHHHHHHHHHhHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 013800 311 LWEMEDDGEDDKAQEEHIQVLPIQSKG--DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHD---HDKALCYFERAV 385 (436)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d---~~~A~~~~~~al 385 (436)
+++.+.+ ++..=++.++++++.+|.+..+|...-.+......+ ..+-+++..+++
T Consensus 117 --------------------w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I 176 (421)
T KOG0529|consen 117 --------------------WVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLI 176 (421)
T ss_pred --------------------HHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHH
Confidence 5554443 578889999999999999999998887777666553 577788999999
Q ss_pred HhCCCCHHHHHHHHHHHH
Q 013800 386 QASPADSHVLAAYACFLW 403 (436)
Q Consensus 386 ~~~p~~~~~~~~la~~~~ 403 (436)
.-++.|-.+|.....++.
T Consensus 177 ~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 177 NDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred hccchhhhHHHHHHHHHH
Confidence 999999999988887766
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.15 Score=32.37 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
.++.++|.+|...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677777777777777777777777654
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.86 E-value=1.3 Score=36.58 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 337 GDLEGAEEYFSRAIL-ANPG-DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 337 g~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
.+.++.+.+++..++ -.|. .-+..+.|+..+++.++ |+.++.+++..++..|++..+....-.+
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlke-Y~~s~~yvd~ll~~e~~n~Qa~~Lk~~i 114 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKE-YSKSLRYVDALLETEPNNRQALELKETI 114 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhh-HHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 456778888888886 4443 35677888999999999 9999999999999999988766544333
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.80 E-value=2.2 Score=40.12 Aligned_cols=64 Identities=11% Similarity=0.123 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
..++..++..+...|+ ++.++..+++.+..+|.+..+|..+..+|...|+...|+..|++...+
T Consensus 153 ~~~l~~lae~~~~~~~-~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGR-ADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhccc-HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4567778888888899 999999999999999999999999999999999999999999988764
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.77 Score=37.91 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 357 GEIMSQYAKLVWELHH--DHDKALCYFERAVQ-ASPAD-SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~--d~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
.+..+++++++....+ |..+.+.+++..++ -.|.. -+.++.|+..++++++|++++.+.+..++..|++..+..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 6778888988876543 36788999999997 45543 367888999999999999999999999999999988765
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.51 E-value=7.4 Score=37.36 Aligned_cols=152 Identities=13% Similarity=0.039 Sum_probs=89.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----CC--CCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--------------
Q 013800 271 QYAKLVWELHRDQHRALTYFERAALA----AP--QDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------- 330 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~----~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------- 330 (436)
.+..+|+..++ |.+|+......++- +. .-.+++..-..++....+..+|...+..+-..
T Consensus 133 rli~Ly~d~~~-YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 133 RLIRLYNDTKR-YTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHhhHH-HHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 35556666654 77777776666542 21 12333444455555666666666655432222
Q ss_pred -----hHHHHcCCHHHHHHHHHHHHHhCC---CCHHH---HHHHHHHHHHhcCCHHHHHHHH--HHHHHhCCCCHHHHHH
Q 013800 331 -----LPIQSKGDLEGAEEYFSRAILANP---GDGEI---MSQYAKLVWELHHDHDKALCYF--ERAVQASPADSHVLAA 397 (436)
Q Consensus 331 -----~~~~~~g~~~~A~~~~~~al~~~p---~~~~~---~~~la~~~~~~g~d~~~A~~~~--~~al~~~p~~~~~~~~ 397 (436)
.++..-.+|.-|..+|-+|++-.. ++..+ +-++-.+-..++. .++-...+ +.+++....+.++...
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~-~ddv~~lls~K~~l~y~g~~i~Amka 290 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNL-PDDVAALLSAKLALKYAGRDIDAMKA 290 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcC-HHHHHHHHhhHHHHhccCcchHHHHH
Confidence 445555788888888888887532 22333 3333334445555 55444433 4456666666788888
Q ss_pred HHHHHHH--CCChHHHHHHHHHHHhhCCC
Q 013800 398 YACFLWE--TEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 398 la~~~~~--~g~~~~A~~~~~~al~l~p~ 424 (436)
.+.++.+ +.+|+.|+..|+.-+..+|.
T Consensus 291 vAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 291 VAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 8877653 46788888888887777664
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.49 E-value=6.4 Score=36.60 Aligned_cols=176 Identities=9% Similarity=0.041 Sum_probs=106.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC-HHHHHHHHHHHHHc
Q 013800 245 KGDLYRAEDYYNHATMADPGDG----ESWMQYAKLVWELHRDQHRALTYFERAALAA-----PQD-SNILAAYACFLWEM 314 (436)
Q Consensus 245 ~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~d~~~A~~~~~~al~~~-----p~~-~~~~~~la~~~~~~ 314 (436)
..+.++|+.-|++++++.++-. .++..+..+.+.+++ |++-...|++.+..- .+. ......+-......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~-~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGN-YKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3478899999999999988753 466777888888886 999888888876542 111 11112222222222
Q ss_pred cCchHHHHHHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHH
Q 013800 315 EDDGEDDKAQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPG------------DGEIMSQYA 364 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la 364 (436)
.+.+--...|+..+.. .+|+..+.|.+-.+.+++.-..... -.++|..-.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 2222222222222222 6777778887777777666443211 123444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHH----HHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 365 KLVWELHHDHDKALCYFERAVQASPAD--SHVLA----AYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 365 ~~~~~~g~d~~~A~~~~~~al~~~p~~--~~~~~----~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
.+|..+.+ ..+-...|++++.+...- +.+.- .=|..+.+.|++++|-..|-.|..-.
T Consensus 199 QmYT~qKn-NKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 199 QMYTEQKN-NKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhhhhcc-cHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 66777777 677788899998775432 32222 22455788899999888777666543
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.86 Score=50.73 Aligned_cols=163 Identities=18% Similarity=0.180 Sum_probs=118.6
Q ss_pred HHHHHHHHHHcCCHHHHHH------HHHHHH-HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC
Q 013800 235 LRNYAQLLQKKGDLYRAED------YYNHAT-MADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA--------PQ 299 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~------~~~~al-~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~--------p~ 299 (436)
....+......|.+.+|.+ .+.+.. .+.|+....+..++.++...+ |+++|+..-.++.-+. |+
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~-d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLG-DNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhc-chHHHHHhcccceeeechhccCCCHH
Confidence 4455555566666766666 555332 347888899999999999987 5999999888886543 33
Q ss_pred CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhc
Q 013800 300 DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA--------NPGDGEIMSQYAKLVWELH 371 (436)
Q Consensus 300 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g 371 (436)
....+.+++ ...+..++...|...+.++..+ .|.-.....+++.++...+
T Consensus 1014 t~~~y~nla----------------------l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~ 1071 (1236)
T KOG1839|consen 1014 TKLAYGNLA----------------------LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVE 1071 (1236)
T ss_pred HHHHhhHHH----------------------HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHH
Confidence 444555555 5556667777888888887765 4565667788999988888
Q ss_pred CCHHHHHHHHHHHHHhCC-----C---CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 372 HDHDKALCYFERAVQASP-----A---DSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 372 ~d~~~A~~~~~~al~~~p-----~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
+ ++.|+++++.|+...- . ....+..++.+...++++..|+...+..+.+
T Consensus 1072 e-~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1072 E-ADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred H-HHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 9 9999999999998542 2 2356677788888888888888887777665
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.2 Score=31.77 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 358 EIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
.++.++|.++..+|+ +++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGR-YEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh-cchhhHHHHHHHHH
Confidence 355666666666666 66666666666654
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.33 E-value=5.4 Score=41.40 Aligned_cols=95 Identities=14% Similarity=0.032 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
.++.+-|.-+++..+|..++++|...+..-|.| ......++.||..+.+ .+.|.++++.|-+.+|.++-....
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~Q-LD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQ-LDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhhccccHHHHHH
Confidence 345677888889999999999999999876654 5567788889999986 999999999999999999888888
Q ss_pred HHHHHHHccCchHHHHHHHHHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHI 328 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~ 328 (436)
+.......++-++|+..+....
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHH
Confidence 7766777777777777665433
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.73 Score=42.81 Aligned_cols=69 Identities=19% Similarity=0.037 Sum_probs=61.5
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~ 400 (436)
..+...++++.|..+.++.+.++|+++.-+.-.|.+|.++|. +.-|+..+...++.-|+++.+-.....
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c-~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC-YHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC-chhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 778888999999999999999999999999999999999999 999999999999999998866554443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.15 E-value=5.3 Score=34.67 Aligned_cols=139 Identities=17% Similarity=0.138 Sum_probs=92.4
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH--HHHHHHHHHHHHHc
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHP--LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG--DG--ESWMQYAKLVWELH 280 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~--~~~~~la~~~~~~~ 280 (436)
-+.+.+..++|+..|...-+..-... .+.+..|.+....|+...|+..|..+-...|- -. .+...-+.++...+
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 34455778899998888766543332 56678888999999999999999988765442 21 23344444555554
Q ss_pred CCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013800 281 RDQHRALTYFERAA-LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEI 359 (436)
Q Consensus 281 ~d~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 359 (436)
-|++-..-.+..- ..+|-...+.-.|| ..-++.|++.+|..+|.+... +..-+..
T Consensus 147 -sy~dV~srvepLa~d~n~mR~sArEALg----------------------lAa~kagd~a~A~~~F~qia~-Da~aprn 202 (221)
T COG4649 147 -SYDDVSSRVEPLAGDGNPMRHSAREALG----------------------LAAYKAGDFAKAKSWFVQIAN-DAQAPRN 202 (221)
T ss_pred -cHHHHHHHhhhccCCCChhHHHHHHHHh----------------------HHHHhccchHHHHHHHHHHHc-cccCcHH
Confidence 4776665554432 22344555666777 777788999999999988776 4444555
Q ss_pred HHHHHHHHHH
Q 013800 360 MSQYAKLVWE 369 (436)
Q Consensus 360 ~~~la~~~~~ 369 (436)
..+.+.+...
T Consensus 203 irqRAq~mld 212 (221)
T COG4649 203 IRQRAQIMLD 212 (221)
T ss_pred HHHHHHHHHH
Confidence 6666665544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.97 E-value=1.7 Score=38.15 Aligned_cols=88 Identities=14% Similarity=-0.010 Sum_probs=66.1
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPG---DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA--DS----HVLAAYACF 401 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~--~~----~~~~~la~~ 401 (436)
..|.+.|++++|++.|.++.+.... -.+.+.++..+....++ +.....++.++-..-.. +. .....-|..
T Consensus 44 ~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d-~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~ 122 (177)
T PF10602_consen 44 DHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGD-WSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLA 122 (177)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 8888999999999999998776533 25678888889999999 99999999998765332 22 223444566
Q ss_pred HHHCCChHHHHHHHHHHH
Q 013800 402 LWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 402 ~~~~g~~~~A~~~~~~al 419 (436)
+...++|.+|.+.|-.+.
T Consensus 123 ~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 123 NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHhchHHHHHHHHHccC
Confidence 777899999977665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.94 E-value=5.2 Score=42.71 Aligned_cols=203 Identities=13% Similarity=0.081 Sum_probs=125.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 220 YYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ 299 (436)
Q Consensus 220 ~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~ 299 (436)
.+++.++..|.-..-|..+-......|..-.-...+++++.-.+.+...|..++..+-..-+-.+.+...+-++++..|-
T Consensus 300 ~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~ 379 (881)
T KOG0128|consen 300 KFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPW 379 (881)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCch
Confidence 34444555555556778888888889999999999999999999999999998854433222234555666667776666
Q ss_pred CHHHHHHHHHHHHHccCch-HHHHHHHHHHHH----------------------hHHHHcCCHHHHHHHHHHHHHh-CCC
Q 013800 300 DSNILAAYACFLWEMEDDG-EDDKAQEEHIQV----------------------LPIQSKGDLEGAEEYFSRAILA-NPG 355 (436)
Q Consensus 300 ~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~~----------------------~~~~~~g~~~~A~~~~~~al~~-~p~ 355 (436)
...+|...-..+.+-+... .-...+...+.. .+-.....|..|..+|...... --.
T Consensus 380 tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt 459 (881)
T KOG0128|consen 380 TGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDT 459 (881)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 6555543332222222111 111111111111 1111223455566666655544 122
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSH-VLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 356 ~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
-...+..+|.+...+..+.+.|+.+....+...-.... .|.....+-...|+...+..++++++...
T Consensus 460 ~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~ 527 (881)
T KOG0128|consen 460 RTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQV 527 (881)
T ss_pred HHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcC
Confidence 25667777888777666688888888777666555544 77778888888888888888888887653
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=92.81 E-value=5.7 Score=36.58 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPG 264 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 264 (436)
+..+|.+..+.|+|++.+.++++++..+++
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 344555555566666666666666655554
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=92.48 E-value=13 Score=41.34 Aligned_cols=98 Identities=15% Similarity=0.116 Sum_probs=76.9
Q ss_pred hhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 206 LIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKK----G---DLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
..+.....|+.|+..|++...-.|... ++.+..|..+..+ | .+++|+.-|++. .-.|.-|--|...|.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALV 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHH
Confidence 366777889999999999999998765 6778888887643 3 356666666543 3467778888899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013800 276 VWELHRDQHRALTYFERAALAAPQDSNILA 305 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~ 305 (436)
|..++ +|++-+++|.-|++..|+++..-.
T Consensus 562 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 562 YQRLG-EYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred HHHhh-hHHHHHHHHHHHHHhcCCCCccHH
Confidence 88887 599999999999999999876543
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.32 E-value=9.2 Score=35.91 Aligned_cols=202 Identities=12% Similarity=0.045 Sum_probs=107.7
Q ss_pred hhHhhhhhhCCCHHHHHHHHHHHHHhC----C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 202 EVVDLIMPNFDDSAEAEEYYKRMIDEY----P----CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYA 273 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~----P----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 273 (436)
..+++-..+..++++|+..|.+.+... . +.......++.+|...|++..-.+.....-+. |...+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~-------m~~ft 79 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREA-------MEDFT 79 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHH-------HHHhc
Confidence 344555666789999999999988752 1 22356789999999999887654444333221 11111
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCchHHHHHHHHHHHH---hHHHHcCCHHHHHHHHH
Q 013800 274 KLVWELHRDQHRALTYFERAALAAPQ---DSNILAAYACFLWEMEDDGEDDKAQEEHIQV---LPIQSKGDLEGAEEYFS 347 (436)
Q Consensus 274 ~~~~~~~~d~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~g~~~~A~~~~~ 347 (436)
-.+..+..+..++.-|. +-+....+...+.+..+- +-...++..+.. .++++.|.|.+|+....
T Consensus 80 ---------k~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~r-Ekr~fLr~~Le~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 80 ---------KPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADR-EKRKFLRLELECKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred ---------chhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 12222333333333332 222111111111110000 001111111111 67778889998888877
Q ss_pred HHHHh------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCHHHH--HHHHHHHHHCCChHHHHHH
Q 013800 348 RAILA------NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS-----PADSHVL--AAYACFLWETEEDEDDSKS 414 (436)
Q Consensus 348 ~al~~------~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~-----p~~~~~~--~~la~~~~~~g~~~~A~~~ 414 (436)
..+.- .+.-..++..-..+|....+ ..++...+..|-... |....+. ..-|..+....+|.-|..+
T Consensus 150 ~ll~ElKk~DDK~~Li~vhllESKvyh~irn-v~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SY 228 (421)
T COG5159 150 PLLHELKKYDDKINLITVHLLESKVYHEIRN-VSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSY 228 (421)
T ss_pred HHHHHHHhhcCccceeehhhhhHHHHHHHHh-hhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHH
Confidence 76543 23345667777778888777 777777776654432 2211221 1224445566677777777
Q ss_pred HHHHHhh
Q 013800 415 SDQFQQV 421 (436)
Q Consensus 415 ~~~al~l 421 (436)
|-.+++-
T Consensus 229 F~Ea~Eg 235 (421)
T COG5159 229 FIEALEG 235 (421)
T ss_pred HHHHHhc
Confidence 7777654
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.09 E-value=15 Score=37.32 Aligned_cols=171 Identities=8% Similarity=-0.022 Sum_probs=113.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY 307 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l 307 (436)
.|-+..++..+-.++-..-+++-....+.+.+... ++..+++.++.+|...+ .++-...+++.++.+=++...-..|
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en~--n~~l~~lWer~ve~dfnDvv~~ReL 138 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKENG--NEQLYSLWERLVEYDFNDVVIGREL 138 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhcC--chhhHHHHHHHHHhcchhHHHHHHH
Confidence 34444555555566655556666666777777654 56678889999988873 6888899999999999988888888
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------------------HHHHHHHHH
Q 013800 308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEI-------------------MSQYAKLVW 368 (436)
Q Consensus 308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------------------~~~la~~~~ 368 (436)
+..+.. ++..++...+.+++.. .....+...-.+.+.+..+.-+++.+. .+.--..++
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 866655 6777777777766543 112222223333444444444443332 222222233
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 369 ELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 369 ~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
...+++.+|++.+...++.+..+..+.-++...+..
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 444559999999999999999988888888777666
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.00 E-value=9.5 Score=45.52 Aligned_cols=151 Identities=15% Similarity=0.078 Sum_probs=99.7
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDE---YP----CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ 271 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (436)
+-|.+....-....+..+-+-.+++++-. +| .-.++|...|++....|+++.|..++-+|.+.. -+.+...
T Consensus 1630 d~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E 1707 (2382)
T KOG0890|consen 1630 DNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLE 1707 (2382)
T ss_pred hhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHH
Confidence 44555554444444455666666665432 32 345899999999999999999999999998877 6788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------HHHHHHH--HHHHHHccCchHHHHHHHHHHHHhHHHHcCC--H
Q 013800 272 YAKLVWELHRDQHRALTYFERAALAAPQD--------SNILAAY--ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGD--L 339 (436)
Q Consensus 272 la~~~~~~~~d~~~A~~~~~~al~~~p~~--------~~~~~~l--a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~--~ 339 (436)
.|..+|..| |-..|+..+++.+..+-.+ +.....+ +.+....+ ......++ -
T Consensus 1708 ~AK~lW~~g-d~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~---------------~~~~es~n~~s 1771 (2382)
T KOG0890|consen 1708 RAKLLWQTG-DELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKIT---------------KYLEESGNFES 1771 (2382)
T ss_pred HHHHHHhhc-cHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHH---------------HHHHHhcchhH
Confidence 999999998 4999999999999765221 1111100 00111111 22223333 3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 340 EGAEEYFSRAILANPGDGEIMSQYAKLV 367 (436)
Q Consensus 340 ~~A~~~~~~al~~~p~~~~~~~~la~~~ 367 (436)
.+-+++|+.+.++.|.....++.+|..|
T Consensus 1772 ~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1772 KDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred HHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 4567888899999887777777777444
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=91.93 E-value=1.9 Score=32.07 Aligned_cols=58 Identities=7% Similarity=0.123 Sum_probs=42.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh
Q 013800 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA 352 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 352 (436)
-++... +.++|+..++++++..++..+-+..+|.+. .+|...|+|.+++.+..+-+++
T Consensus 15 kLY~~~-~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~-------------------qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 15 KLYHQN-ETQQALQKWRKALEKITDREDRFRVLGYLI-------------------QAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHhccc-hHHHHHHHHHHHHhhcCChHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 334443 478888888888888888877777777655 7777888888887776655544
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=91.89 E-value=3.3 Score=40.78 Aligned_cols=88 Identities=11% Similarity=0.013 Sum_probs=65.2
Q ss_pred hhhhhhCCCHHHHHHHHHHHHHhC--------CC-----CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013800 205 DLIMPNFDDSAEAEEYYKRMIDEY--------PC-----HP-----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG 266 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~--------P~-----~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 266 (436)
+...+++++|..|.--|+.++++- |. +. .+-..+..||+.+++.+-|+.+..+.|.++|...
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 346677888888888888888752 11 11 2234677888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013800 267 ESWMQYAKLVWELHRDQHRALTYFERA 293 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~a 293 (436)
.-+...|.|+..+.+ |.+|...+.-+
T Consensus 263 rnHLrqAavfR~LeR-y~eAarSamia 288 (569)
T PF15015_consen 263 RNHLRQAAVFRRLER-YSEAARSAMIA 288 (569)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 888888888877776 87777665544
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.13 E-value=7.6 Score=34.60 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCChHHHH
Q 013800 340 EGAEEYFSRAILA-NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA----DSHVLAAYACFLWETEEDEDDS 412 (436)
Q Consensus 340 ~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~ 412 (436)
++|...|.++-.. .-++++..+.||..|.+. |.++|+.++.+++++.+. +++++..|+.++..+|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~kr--D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKR--DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4455555443221 124677777777776643 378888888888887543 3678888888888888888773
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.03 E-value=1.1 Score=41.74 Aligned_cols=71 Identities=18% Similarity=0.045 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
..++=..+...++++.|..+.++.+.++|+++.-+.-.|.+|..++. +.-|++.+...++..|+++.+-..
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c-~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC-YHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC-chhhHHHHHHHHHhCCCchHHHHH
Confidence 33444556667777777777777777777777777777777777764 777777777777777776665443
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.93 Score=28.27 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHHhCC
Q 013800 234 LLRNYAQLLQKKGDLYRAEDY--YNHATMADP 263 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~--~~~al~~~p 263 (436)
.++.+|..+..+|++++|+.. |.-+..+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 345555555555555555555 224444443
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=90.82 E-value=14 Score=34.53 Aligned_cols=153 Identities=18% Similarity=0.129 Sum_probs=79.4
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHcCCHH
Q 013800 210 NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-----DPGDGESWMQYAKLVWELHRDQH 284 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~d~~ 284 (436)
+.++|++|++++... +..+.+.|++.-|.+...-.++. .+.+.....++..++......-.
T Consensus 2 ~~kky~eAidLL~~G--------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p 67 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG--------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEP 67 (260)
T ss_dssp HTT-HHHHHHHHHHH--------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-T
T ss_pred ccccHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcc
Confidence 456777777766544 33344444444443333332222 22233333444444443322122
Q ss_pred HHHHHHHHHHHhC------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH----HHHHHHhCC
Q 013800 285 RALTYFERAALAA------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY----FSRAILANP 354 (436)
Q Consensus 285 ~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~----~~~al~~~p 354 (436)
+-....+++++-. -.++..+..+|..+++.+++..|..++ -.|.-..+... +.-..+..|
T Consensus 68 ~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf----------l~~~~~~~~~~~~ll~~~~~~~~~ 137 (260)
T PF04190_consen 68 ERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF----------LLGTDPSAFAYVMLLEEWSTKGYP 137 (260)
T ss_dssp THHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH----------HTS-HHHHHHHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH----------HhcCChhHHHHHHHHHHHHHhcCC
Confidence 2334444444432 247899999999999999887776655 34555444433 222334567
Q ss_pred CCHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHh
Q 013800 355 GDGEIMSQYAKLV-WELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 355 ~~~~~~~~la~~~-~~~g~d~~~A~~~~~~al~~ 387 (436)
.+.+.+...|.+. ...++ ...|...+...++.
T Consensus 138 ~e~dlfi~RaVL~yL~l~n-~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 138 SEADLFIARAVLQYLCLGN-LRDANELFDTFTSK 170 (260)
T ss_dssp --HHHHHHHHHHHHHHTTB-HHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHH
Confidence 7788887777664 45566 89999888776665
|
; PDB: 3LKU_E 2WPV_G. |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=90.68 E-value=1 Score=34.84 Aligned_cols=55 Identities=22% Similarity=0.109 Sum_probs=39.1
Q ss_pred hhCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013800 209 PNFDDSAEAEEYYKRMIDEYPC---------HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP 263 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 263 (436)
.+.|+|.+|++.+.+.++.... ...++.++|.++...|++++|+..+++++.+..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3558899998888887764321 134567778888888888888888888877643
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.58 E-value=2 Score=43.58 Aligned_cols=132 Identities=18% Similarity=0.061 Sum_probs=72.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchH
Q 013800 240 QLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGE 319 (436)
Q Consensus 240 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 319 (436)
......++++++..... +-++-|.-+.-+.....-|.+..|-++.|+... .++...+.|+
T Consensus 269 k~av~~~d~~~v~~~i~-~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA----------- 328 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIA-ASNLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA----------- 328 (443)
T ss_dssp HHHHHTT-HHH-----H-HHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH-----------
T ss_pred HHHHHcCChhhhhhhhh-hhhhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH-----------
Confidence 34456788888877774 223334433443433333444444355555443 3455666555
Q ss_pred HHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCC
Q 013800 320 DDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA--------SPAD 391 (436)
Q Consensus 320 A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~--------~p~~ 391 (436)
.+.|+++.|.+..++ .+++..|..||......|+ ++-|.++|+++-.. --.+
T Consensus 329 --------------l~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~-~~lAe~c~~k~~d~~~L~lLy~~~g~ 388 (443)
T PF04053_consen 329 --------------LQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGN-IELAEECYQKAKDFSGLLLLYSSTGD 388 (443)
T ss_dssp --------------HHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTB-HHHHHHHHHHCT-HHHHHHHHHHCT-
T ss_pred --------------HhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCC-HHHHHHHHHhhcCccccHHHHHHhCC
Confidence 578999999776533 3578899999999999999 99999999885321 2333
Q ss_pred HHHHHHHHHHHHHCCChHHH
Q 013800 392 SHVLAAYACFLWETEEDEDD 411 (436)
Q Consensus 392 ~~~~~~la~~~~~~g~~~~A 411 (436)
...+..++......|+..-|
T Consensus 389 ~~~L~kl~~~a~~~~~~n~a 408 (443)
T PF04053_consen 389 REKLSKLAKIAEERGDINIA 408 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHccCHHHH
Confidence 44445555555555555444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=90.54 E-value=1.2 Score=34.55 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=44.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 333 IQSKGDLEGAEEYFSRAILANPG---------DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
..+.|+|.+|++.+.+.+..... ...++.++|.+....|+ +++|+..+++++.+...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~-~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGH-YEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHH
Confidence 44679999998888888766322 13567889999999999 99999999999987543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=90.29 E-value=9.4 Score=31.63 Aligned_cols=32 Identities=13% Similarity=-0.011 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 246 GDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
+.....+.+++..+..++.++..+..+..+|.
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~ 52 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYA 52 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHH
Confidence 34444444444444444444444444444443
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=90.25 E-value=16 Score=34.20 Aligned_cols=197 Identities=15% Similarity=0.112 Sum_probs=104.7
Q ss_pred hHhhhhhhCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhC------CCCHHHHH
Q 013800 203 VVDLIMPNFDDSAEAEEYYKRMIDE-----YPCHPLLLRNYAQLLQKKGDLY-RAEDYYNHATMAD------PGDGESWM 270 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~------p~~~~~~~ 270 (436)
.-+..+.+.|++.-|.++..-.++. .+.+.....+++.++...+.-+ +-..+.+++++-. -.++..+.
T Consensus 15 ~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~ 94 (260)
T PF04190_consen 15 SGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHH 94 (260)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHH
T ss_pred HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHH
Confidence 3445667778887776666555542 2344555567777777655332 2334444444432 24789999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHH
Q 013800 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILA--AYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~--~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 348 (436)
.+|..+++.+. +.+|..+|-.. +++.... .+.......|...+..-.+.+++ ..|...++...|...+..
T Consensus 95 ~~a~~~~~e~~-~~~A~~Hfl~~-----~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaV--L~yL~l~n~~~A~~~~~~ 166 (260)
T PF04190_consen 95 LLAEKLWKEGN-YYEAERHFLLG-----TDPSAFAYVMLLEEWSTKGYPSEADLFIARAV--LQYLCLGNLRDANELFDT 166 (260)
T ss_dssp HHHHHHHHTT--HHHHHHHHHTS------HHHHHHHHHHHHHHHHHTSS--HHHHHHHHH--HHHHHTTBHHHHHHHHHH
T ss_pred HHHHHHHhhcc-HHHHHHHHHhc-----CChhHHHHHHHHHHHHHhcCCcchhHHHHHHH--HHHHHhcCHHHHHHHHHH
Confidence 99999999875 99999888543 2222222 23333344555556655555655 778888999999887776
Q ss_pred HHHh----CC----------CCHHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 013800 349 AILA----NP----------GDGEIMSQYAKLV--WELHH--DHDKALCYFERAVQASPADSHVLAAYACFLWETEE 407 (436)
Q Consensus 349 al~~----~p----------~~~~~~~~la~~~--~~~g~--d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 407 (436)
-++. +| .....++.+-.++ ++.++ -|..-.+.|+..|+.+|.....+..+|..|+....
T Consensus 167 f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~~ 243 (260)
T PF04190_consen 167 FTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQP 243 (260)
T ss_dssp HHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHHHHHHH---S
T ss_pred HHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHHHHHHCCCCC
Confidence 6655 33 2222222222222 22222 02233334444455667777788888888887553
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.95 E-value=17 Score=35.92 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=12.0
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
++..-+++|..|.+++-+|+...|+
T Consensus 255 rIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 255 RIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred hHHHhhcchhHHHHHHHHHHHhCcc
Confidence 4444444455555555555544444
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=89.90 E-value=2.3 Score=31.62 Aligned_cols=59 Identities=8% Similarity=0.037 Sum_probs=39.2
Q ss_pred hhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHH
Q 013800 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNY---AQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l---a~~~~~~g~~~~A~~~~~~al~ 260 (436)
+..|.-++...+.++|+..++++++..++....+..+ ..+|...|+|.+.+++..+-+.
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666788888888888888777666544444 4456677777777776655444
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=89.78 E-value=12 Score=32.72 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=72.8
Q ss_pred hhhhhhHhhhh-hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 198 DDAGEVVDLIM-PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQ-----KKGDLYRAEDYYNHATMADPGDGESWMQ 271 (436)
Q Consensus 198 ~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (436)
+.+...+|..+ .-+.+|++|...|+.-.+.+. .+..-+.+|..++ ..++...|++.+..+.. -+.+.+...
T Consensus 34 Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~ 110 (248)
T KOG4014|consen 34 PESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRY 110 (248)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhh
Confidence 34444455433 234678888888888776664 5556667776665 35678999999998876 567888888
Q ss_pred HHHHHHHHcC------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 272 YAKLVWELHR------DQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 272 la~~~~~~~~------d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
+|.+++.-.. |..+|+.++.++..+. +..+.+.|.
T Consensus 111 ~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS 151 (248)
T KOG4014|consen 111 LGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLS 151 (248)
T ss_pred hhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHH
Confidence 8877765321 3678999999987764 445555555
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.74 E-value=0.45 Score=27.13 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 013800 234 LLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
+.+.+|.++...|++++|+..++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45666666666666666666554
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.63 E-value=14 Score=33.03 Aligned_cols=77 Identities=21% Similarity=0.249 Sum_probs=55.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 277 WELHRDQHRALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 277 ~~~~~d~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
|...+ -++|...|-++-... -++++..+.+| . |+...+.++|+..+.+++++.+.
T Consensus 117 Wsr~~-d~~A~~~fL~~E~~~~l~t~elq~aLA----------------------t-yY~krD~~Kt~~ll~~~L~l~~~ 172 (203)
T PF11207_consen 117 WSRFG-DQEALRRFLQLEGTPELETAELQYALA----------------------T-YYTKRDPEKTIQLLLRALELSNP 172 (203)
T ss_pred hhccC-cHHHHHHHHHHcCCCCCCCHHHHHHHH----------------------H-HHHccCHHHHHHHHHHHHHhcCC
Confidence 33334 366666665543322 14677777777 3 33468999999999999998543
Q ss_pred ----CHHHHHHHHHHHHHhcCCHHHHH
Q 013800 356 ----DGEIMSQYAKLVWELHHDHDKAL 378 (436)
Q Consensus 356 ----~~~~~~~la~~~~~~g~d~~~A~ 378 (436)
+++++..|+.++..+|+ ++.|-
T Consensus 173 ~~~~n~eil~sLas~~~~~~~-~e~AY 198 (203)
T PF11207_consen 173 DDNFNPEILKSLASIYQKLKN-YEQAY 198 (203)
T ss_pred CCCCCHHHHHHHHHHHHHhcc-hhhhh
Confidence 58999999999999999 88774
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.14 E-value=2.5 Score=39.80 Aligned_cols=56 Identities=13% Similarity=0.105 Sum_probs=52.5
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
..+...|+++.+++.+++.+..+|.+-..|..+..+|...|+ ...|+..|++.-..
T Consensus 161 e~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~-~~~ai~~y~~l~~~ 216 (280)
T COG3629 161 EALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR-QSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC-chHHHHHHHHHHHH
Confidence 777889999999999999999999999999999999999999 99999999987663
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=89.13 E-value=25 Score=34.92 Aligned_cols=109 Identities=12% Similarity=0.076 Sum_probs=58.8
Q ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 222 KRMIDEYPC-HPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ 299 (436)
Q Consensus 222 ~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~ 299 (436)
+..+..++. +.+.-...|..-+-.|+-.+|.+.+...-.. .|.....+..|.........|..+|+..|+.+--+.|.
T Consensus 101 r~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPG 180 (421)
T PRK12798 101 RKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPG 180 (421)
T ss_pred HHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCc
Confidence 344444432 4455566666777788888888777654322 23333344444444444445688888888888888876
Q ss_pred C---HHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 013800 300 D---SNILAAYACFLWEMEDDGEDDKAQEEHIQV 330 (436)
Q Consensus 300 ~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 330 (436)
- ..++..-..+....|+.++...+..+|+..
T Consensus 181 TLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rR 214 (421)
T PRK12798 181 TLVEEAALRRSLFIAAQLGDADKFEALARNYLRR 214 (421)
T ss_pred hHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHH
Confidence 3 223333332334444444444444444433
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=88.79 E-value=12 Score=41.47 Aligned_cols=91 Identities=15% Similarity=0.076 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC--CHHHHHHHHHHHHHhCCCCH
Q 013800 283 QHRALTYFERAALAAPQD---SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG--DLEGAEEYFSRAILANPGDG 357 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~~~ 357 (436)
|++|+..|++...--|.. .++.+..|..+... +-...+ .+++|+.-|++. .-.|.-|
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 552 (932)
T PRK13184 491 YDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEK-----------------ASEQGDPRDFTQALSEFSYL-HGGVGAP 552 (932)
T ss_pred HHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHH-----------------HHhcCChHHHHHHHHHHHHh-cCCCCCc
Confidence 666666666666666553 34445555444331 111111 455555555543 2234445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
--|...|.+|..+|+ +++-+++|..|++..|.++
T Consensus 553 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 553 LEYLGKALVYQRLGE-YNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred hHHHhHHHHHHHhhh-HHHHHHHHHHHHHhcCCCC
Confidence 556666666666666 7777777777777666665
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=88.69 E-value=1.6 Score=41.04 Aligned_cols=62 Identities=24% Similarity=0.233 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 217 AEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 217 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
|+.+|.+|+.+.|++...|..+|.++...|+.=.|+-+|-|++....-.+.+..++..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999997655567788888877655
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=88.55 E-value=1.8 Score=26.98 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHH--HHHHHHhCCC
Q 013800 358 EIMSQYAKLVWELHHDHDKALCY--FERAVQASPA 390 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~--~~~al~~~p~ 390 (436)
+.++.+|..+...|+ +++|+.. |+-+..+++.
T Consensus 2 e~~y~~a~~~y~~~k-y~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGK-YDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhccc
Confidence 345556666666666 6666666 3355555443
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.27 E-value=21 Score=37.37 Aligned_cols=58 Identities=16% Similarity=0.084 Sum_probs=33.4
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHh--------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDE--------------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
..|..+++-....=+++-|.+.|.+.-.+ ....+ --..+|.++...|++.+|...|.+
T Consensus 586 ~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 586 TDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred chHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHhhhhHHHHHHHHHH
Confidence 35777777766667777777777665321 11111 123456666666666666666654
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=88.09 E-value=0.64 Score=26.49 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHCCChHHHHHHH
Q 013800 394 VLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~ 415 (436)
+...+|.++...|+.++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555554444
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=88.09 E-value=7.4 Score=38.46 Aligned_cols=91 Identities=11% Similarity=0.007 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C-----C-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADP-G-----D-----GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD 300 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~-----~-----~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~ 300 (436)
+...+..+..-...|++..|+++..+.-.+.. . + ..+.-.+..||..+++ .+-|+..-.+.|.++|..
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rk-pdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRK-PDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCC-CchHHHHHhhhhhcCcch
Confidence 33344444444455555555555555544321 1 1 1233456666666654 677777777777777776
Q ss_pred HHHHHHHHHHHHHccCchHHHHH
Q 013800 301 SNILAAYACFLWEMEDDGEDDKA 323 (436)
Q Consensus 301 ~~~~~~la~~~~~~g~~~~A~~~ 323 (436)
..-+...+.+...+.++.+|.+-
T Consensus 262 frnHLrqAavfR~LeRy~eAarS 284 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEAARS 284 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666555543
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.99 E-value=5 Score=36.18 Aligned_cols=60 Identities=20% Similarity=0.104 Sum_probs=54.9
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG 266 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 266 (436)
.+.+.+..++|+...+.-++.+|.+......+-.++...|+|++|...++-+-++.|++.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 355668899999999999999999999999999999999999999999999999999863
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=87.89 E-value=1.8 Score=40.64 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
|+.+|.+|+.+.|.+...++.+|.+....|+ .-.|+-+|-+++-...-.+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~-~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGD-DLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT--HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccc-hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6889999999999999999999999999988 8999999999987655557888888888777
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.87 E-value=1 Score=28.52 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 234 LLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
++..+|.+-...++|++|+..|+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444555555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.86 E-value=8.6 Score=36.20 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Q 013800 363 YAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSD 416 (436)
Q Consensus 363 la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 416 (436)
.+..+...|. +.+|+++.++++.++|-+...+..+..++..+|+.-.+.+.|+
T Consensus 285 va~~yle~g~-~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khye 337 (361)
T COG3947 285 VARAYLEAGK-PNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYE 337 (361)
T ss_pred HHHHHHHcCC-hHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHH
Confidence 3334444444 4555555555555554444444444444444554444444443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.67 E-value=5.2 Score=41.27 Aligned_cols=95 Identities=18% Similarity=0.031 Sum_probs=59.8
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHH--
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS--------PADSHVLAAYAC-- 400 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~--------p~~~~~~~~la~-- 400 (436)
.+..+.|+++.|..+..++ ++..-|..||.+....++ +..|.++|.++.... -.+.+.+..+|.
T Consensus 645 elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~-l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~ 718 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGE-LPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLA 718 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhccc-chhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHH
Confidence 5556778888886655443 556778888888888888 888888888875431 233333333333
Q ss_pred -----------HHHHCCChHHHHHHHHHHHhhCCCChhHHhhhhhc
Q 013800 401 -----------FLWETEEDEDDSKSSDQFQQVAPIRQGAVTTANVY 435 (436)
Q Consensus 401 -----------~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~an~y 435 (436)
+++..|+++++++.+..... +++++..|..|
T Consensus 719 ~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~r----~peAal~ArtY 760 (794)
T KOG0276|consen 719 KKQGKNNLAFLAYFLSGDYEECLELLISTQR----LPEAALFARTY 760 (794)
T ss_pred HhhcccchHHHHHHHcCCHHHHHHHHHhcCc----CcHHHHHHhhh
Confidence 36677777777666554433 34555544444
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.59 E-value=31 Score=34.15 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
+..++.+|.+..-+++ |..|.++|-+|+...|.
T Consensus 247 ARY~yY~GrIkaiqld-YssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 247 ARYLYYLGRIKAIQLD-YSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHhhHHHhhcc-hhHHHHHHHHHHHhCcc
Confidence 4444445555444444 55555555555544443
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.80 E-value=1.8 Score=45.57 Aligned_cols=185 Identities=12% Similarity=0.070 Sum_probs=113.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhCCC-CH
Q 013800 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG------DGESWMQYAKLVW--ELHRDQHRALTYFERAALAAPQ-DS 301 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~--~~~~d~~~A~~~~~~al~~~p~-~~ 301 (436)
+++...++-..|....+|+.-++..+..-.+ |+ ...+.+.++.++- ...||-++|+...-.+++.... .+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 3567778888888888998877776654333 32 1222233333332 3345678888888888887643 44
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 013800 302 NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYF 381 (436)
Q Consensus 302 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~ 381 (436)
+.+..-|.+|.+.--. .-|...+..+.|+++|++|++..|. ...-.+++.++...|+.|+...++=
T Consensus 279 Dm~Cl~GRIYKDmF~~-------------S~ytDa~s~~~a~~WyrkaFeveP~-~~sGIN~atLL~aaG~~Fens~Elq 344 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIA-------------SNYTDAESLNHAIEWYRKAFEVEPL-EYSGINLATLLRAAGEHFENSLELQ 344 (1226)
T ss_pred ceeeeechhhhhhhhc-------------cCCcchhhHHHHHHHHHHHhccCch-hhccccHHHHHHHhhhhccchHHHH
Confidence 4444445333221000 2234456778999999999999997 3445677888888887676666665
Q ss_pred HHHHHhCC-----CC---HHHHHHHHHH---HHHCCChHHHHHHHHHHHhhC-CCChhHHh
Q 013800 382 ERAVQASP-----AD---SHVLAAYACF---LWETEEDEDDSKSSDQFQQVA-PIRQGAVT 430 (436)
Q Consensus 382 ~~al~~~p-----~~---~~~~~~la~~---~~~~g~~~~A~~~~~~al~l~-p~~~~a~~ 430 (436)
.-.+.++. .. -..|+..|.. -.-.+++.+|++.-++...+. |.+....+
T Consensus 345 ~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~ 405 (1226)
T KOG4279|consen 345 QIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKST 405 (1226)
T ss_pred HHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHH
Confidence 55555431 11 1223333322 223578999999999988885 55555444
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=86.28 E-value=17 Score=33.74 Aligned_cols=80 Identities=19% Similarity=0.062 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCC
Q 013800 339 LEGAEEYFSRAILANPG------DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD------SHVLAAYACFLWETE 406 (436)
Q Consensus 339 ~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g 406 (436)
....++++.+|+..... -..+...+|.-|+..|+ +++|+++|+.+....... ..++..+..|...+|
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~-~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGD-YDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 34456666666655332 13456789999999999 999999999997654332 267788889999999
Q ss_pred ChHHHHHHHHHHH
Q 013800 407 EDEDDSKSSDQFQ 419 (436)
Q Consensus 407 ~~~~A~~~~~~al 419 (436)
+.++.+.+.-+.+
T Consensus 233 ~~~~~l~~~leLl 245 (247)
T PF11817_consen 233 DVEDYLTTSLELL 245 (247)
T ss_pred CHHHHHHHHHHHh
Confidence 9998877655443
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.54 E-value=9.7 Score=40.85 Aligned_cols=29 Identities=31% Similarity=0.380 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
.++..+|..++.+|++++|..+|-+++..
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 67889999999999999999999998864
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.29 E-value=13 Score=38.93 Aligned_cols=87 Identities=13% Similarity=0.072 Sum_probs=56.0
Q ss_pred HHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 294 ALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE 369 (436)
Q Consensus 294 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 369 (436)
-+++..+.+.+..++..+.....+.-|.+++...-.. .++...++|.+|....++.=+.- +.+++-.|+.+..
T Consensus 740 rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 740 RKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAE 816 (1081)
T ss_pred hhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhhCcccc---ccccchHHHHhhh
Confidence 3444555566666666666666666666666543322 66667788888877655432222 3467777877777
Q ss_pred hcCCHHHHHHHHHHH
Q 013800 370 LHHDHDKALCYFERA 384 (436)
Q Consensus 370 ~g~d~~~A~~~~~~a 384 (436)
..+ +++|.+.|.+|
T Consensus 817 ~Dr-FeEAqkAfhkA 830 (1081)
T KOG1538|consen 817 NDR-FEEAQKAFHKA 830 (1081)
T ss_pred hhh-HHHHHHHHHHh
Confidence 777 88887777665
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=85.21 E-value=2.7 Score=24.50 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 248 LYRAEDYYNHATMADPGDGESWMQY 272 (436)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~~~~~~l 272 (436)
++.|...|++++...|..+.+|..+
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHH
Confidence 3344444444444444444444433
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=84.70 E-value=25 Score=34.88 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHH--HHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE--SWMQY--AKLVWELHRDQHRALTYFERAALA 296 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l--a~~~~~~~~d~~~A~~~~~~al~~ 296 (436)
.....+..++..++|..|...+......-|.... .+..+ |..+|..- ++.+|.+.+++.+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~f-d~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRF-DHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHH
Confidence 3455666777888888888888887775333322 33333 33334444 477777777776654
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.35 E-value=2 Score=27.11 Aligned_cols=28 Identities=14% Similarity=0.320 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 359 IMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
++..||.+-...++ |++|+..|++++++
T Consensus 3 v~~~Lgeisle~e~-f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENEN-FEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhcc-HHHHHHHHHHHHHH
Confidence 34445555555555 55555555555543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.03 E-value=14 Score=38.24 Aligned_cols=93 Identities=22% Similarity=0.121 Sum_probs=55.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH
Q 013800 241 LLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA--------PQDSNILAAYACFLW 312 (436)
Q Consensus 241 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~ 312 (436)
+..+.|+++.|.....+ .++..-|..||.+....+. +..|.+||.++..+. -.+.+.+..+|....
T Consensus 646 lal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~-l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGE-LPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred hhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhccc-chhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHH
Confidence 44566777777665443 3566778888888777764 899999998875542 223333444443333
Q ss_pred HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHH
Q 013800 313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 348 (436)
+.|...-|. .+|...|+++++.+.+..
T Consensus 720 ~~g~~N~AF---------~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 720 KQGKNNLAF---------LAYFLSGDYEECLELLIS 746 (794)
T ss_pred hhcccchHH---------HHHHHcCCHHHHHHHHHh
Confidence 333221111 566677777777666544
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=83.97 E-value=3.4 Score=24.06 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLL 242 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~ 242 (436)
|+.+.|..+|++++...|....+|..++...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5678999999999999999999998887653
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=83.73 E-value=30 Score=30.44 Aligned_cols=168 Identities=18% Similarity=0.184 Sum_probs=105.2
Q ss_pred CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-c---CCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 230 CHPLLLRNYAQLLQ-KKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL-H---RDQHRALTYFERAALAAPQDSNIL 304 (436)
Q Consensus 230 ~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~---~d~~~A~~~~~~al~~~p~~~~~~ 304 (436)
..++.-..||..+. -+.++++|..+|+.-..-+ ..+...+.+|..++.- + +++..|++.|+.+.. .+.+.+.
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC 108 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQAC 108 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHH
Confidence 45566667777664 4677888888887654433 2456667777544321 1 257899999998876 5678888
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----------c
Q 013800 305 AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGD--LEGAEEYFSRAILANPGDGEIMSQYAKLVWEL-----------H 371 (436)
Q Consensus 305 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g 371 (436)
..++.++|.-... +.++ ..+|.+++.++-.+. +..+.++|...++.- |
T Consensus 109 ~~~gLl~~~g~~~-----------------r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g 169 (248)
T KOG4014|consen 109 RYLGLLHWNGEKD-----------------RKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEG 169 (248)
T ss_pred hhhhhhhccCcCC-----------------ccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCC
Confidence 8888666553321 1233 677888888876543 345555555444332 1
Q ss_pred ------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----CChHHHHHHHHHHHhh
Q 013800 372 ------------HDHDKALCYFERAVQASPADSHVLAAYACFLWET----EEDEDDSKSSDQFQQV 421 (436)
Q Consensus 372 ------------~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~l 421 (436)
+|.+.|.++--+|-+++ ++.+..++.+.|..- .+.++|..+-++++++
T Consensus 170 ~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 170 KPLDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred CCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 12566666666666554 467777777766432 2567788888888876
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=83.41 E-value=24 Score=34.98 Aligned_cols=62 Identities=11% Similarity=0.037 Sum_probs=46.8
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHH--HcCCHHHHHHHHHHHHHh
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP--LLLRNYAQLLQ--KKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~--~~~~~la~~~~--~~g~~~~A~~~~~~al~~ 261 (436)
........+++.++|..|...+..+...-|... ..+..+...|. ..-++.+|.+.+++.+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345566678899999999999999998633333 45556655554 678899999999998775
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.00 E-value=4.7 Score=37.87 Aligned_cols=66 Identities=14% Similarity=0.055 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHH--hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013800 319 EDDKAQEEHIQV--LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAV 385 (436)
Q Consensus 319 ~A~~~~~~~~~~--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al 385 (436)
.+..++...+-. ..|...|.+.+|+++.++++.++|-+...+..+..++..+|+ --.|++.|++.-
T Consensus 273 rle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD-~is~~khyerya 340 (361)
T COG3947 273 RLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD-EISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc-chhhhhHHHHHH
Confidence 333444433333 788899999999999999999999999999999999999999 788888887753
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=82.98 E-value=11 Score=37.60 Aligned_cols=61 Identities=8% Similarity=-0.117 Sum_probs=47.5
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMID--------EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~--------~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
+.+++-.++.-+|||..|++.++..-- ..+-+...++..|-+|+.+++|.+|+..|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666788999999999998775311 1233456789999999999999999999998864
|
|
| >smart00101 14_3_3 14-3-3 homologues | Back alignment and domain information |
|---|
Probab=82.36 E-value=42 Score=31.08 Aligned_cols=56 Identities=5% Similarity=-0.066 Sum_probs=35.7
Q ss_pred hhHhhhhhhCCCHHHHHHHHHHHHHh-CC--CCHHHHHHHHHHHH-HcCCHHHHHHHHHH
Q 013800 202 EVVDLIMPNFDDSAEAEEYYKRMIDE-YP--CHPLLLRNYAQLLQ-KKGDLYRAEDYYNH 257 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~-~P--~~~~~~~~la~~~~-~~g~~~~A~~~~~~ 257 (436)
..++.+..+.++|++.+.+.+++++. +| -+.+-...+..+|- ..|....+...+..
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s 64 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS 64 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH
Confidence 44566677778888888888877776 43 23445555555554 35666666666665
|
14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases. |
| >KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=82.31 E-value=57 Score=41.04 Aligned_cols=102 Identities=15% Similarity=0.086 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCC---HHHH
Q 013800 266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGD---LEGA 342 (436)
Q Consensus 266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~---~~~A 342 (436)
++.+...|..+.+.++ .++|-..|..|++++..-+.+|..+|..+.. +.....++ -..|
T Consensus 2812 aeff~lkG~f~~kL~~-~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~-----------------~f~~e~~ni~~a~~a 2873 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGK-FEEANKAFSAAVQIDDGLGKAWAEWGKYLDN-----------------RFNKEPVNISFACNA 2873 (3550)
T ss_pred HHHHHhhhHHHHHhcC-cchhHHHHHHHHHHHhhhHHHHHHHHHHHHH-----------------HHhccCcccHHHHHH
Confidence 5667778888888875 9999999999999998889999888865543 22222222 2456
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013800 343 EEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 343 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~ 388 (436)
+.+|-+|....- +..+.-.++.+++-+. +++|...+.+++...
T Consensus 2874 vsCyLqA~~~~~-~skaRk~iakvLwLls--~dda~~~l~~~~~k~ 2916 (3550)
T KOG0889|consen 2874 VSCYLQAARLYN-SSKARKLIAKVLWLLS--FDDSLGTLGDVFDKF 2916 (3550)
T ss_pred HHHHHHHhcccc-chhhHHHHHHHHHHHH--hccccchHHHHHHHh
Confidence 666767665542 3566667777777662 455555555555544
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.72 E-value=32 Score=31.17 Aligned_cols=58 Identities=19% Similarity=0.110 Sum_probs=49.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 277 WELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 277 ~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
...+. .++|+...+.-++..|.+......+. .++.-.|+|++|...++-+-++.|++
T Consensus 12 L~~~s-L~dai~~a~~qVkakPtda~~Rhflf----------------------qLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 12 LDDNS-LQDAIGLARDQVKAKPTDAGGRHFLF----------------------QLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHhcc-HHHHHHHHHHHHhcCCccccchhHHH----------------------HHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34443 89999999999999999998888888 77788899999999999999998875
Q ss_pred H
Q 013800 357 G 357 (436)
Q Consensus 357 ~ 357 (436)
.
T Consensus 69 t 69 (273)
T COG4455 69 T 69 (273)
T ss_pred c
Confidence 3
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=80.80 E-value=42 Score=37.70 Aligned_cols=46 Identities=24% Similarity=0.112 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHH
Q 013800 302 NILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFS 347 (436)
Q Consensus 302 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~ 347 (436)
..+..+|..+.....+++|.-.|+.+-+. .+|...|+|.+|+....
T Consensus 940 ~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ 989 (1265)
T KOG1920|consen 940 VIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAA 989 (1265)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHH
Confidence 34556777777777777777666643322 55666666666665544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 5e-18
Identities = 30/192 (15%), Positives = 47/192 (24%), Gaps = 25/192 (13%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
D + + P + A GD E PG E+ +
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
++ W R ++A+ AAP+ I L +
Sbjct: 64 GRVRWTQQRHAEA-AVLLQQASDAAPEHPGIALWLGHALEDA------------------ 104
Query: 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDH--DKALCYFERAVQASPA 390
G E A ++RA P + I +Q L D AV
Sbjct: 105 ----GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160
Query: 391 DSHVLAAYACFL 402
A +
Sbjct: 161 AVEPFAFLSEDA 172
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 9e-11
Identities = 27/185 (14%), Positives = 43/185 (23%), Gaps = 24/185 (12%)
Query: 246 GDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILA 305
D R A P D +W+ A + +R P +A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTT-AGEMAVQRGLALHPGHPEAVA 61
Query: 306 AYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAK 365
W A +A A P I
Sbjct: 62 RLGRVRWTQ----------------------QRHAEAAVLLQQASDAAPEHPGIALWLGH 99
Query: 366 LVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425
+ + + A + RA Q P + ++ A + + S Q +
Sbjct: 100 ALEDA-GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158
Query: 426 QGAVT 430
GAV
Sbjct: 159 VGAVE 163
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 22/119 (18%), Positives = 34/119 (28%), Gaps = 1/119 (0%)
Query: 195 PGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDY 254
PG +A + + AEA ++ D P HP + L+ G A
Sbjct: 54 PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAA 113
Query: 255 YNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWE 313
Y A P + Q L D + A Q + +A +
Sbjct: 114 YTRAHQLLPEEPYITAQLLNWRRRLC-DWRALDVLSAQVRAAVAQGVGAVEPFAFLSED 171
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 2e-13
Identities = 34/196 (17%), Positives = 69/196 (35%), Gaps = 22/196 (11%)
Query: 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274
AE + ++ + P + +L + + + L R+ + A +P E++
Sbjct: 16 EAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGN 75
Query: 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ 334
+ E + Q A+ ++ A P + A L G+ + A + ++ L
Sbjct: 76 VYKERGQLQ-EAIEHYRHALRLKPDFIDGYINLAAALVAA---GDMEGAVQAYVSALQYN 131
Query: 335 SK---------------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALC 379
G LE A+ + +AI P S + + A+
Sbjct: 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ-GEIWLAIH 190
Query: 380 YFERAVQASP--ADSH 393
+FE+AV P D++
Sbjct: 191 HFEKAVTLDPNFLDAY 206
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 2e-10
Identities = 36/195 (18%), Positives = 83/195 (42%), Gaps = 22/195 (11%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
EA+ Y + I+ P + N + +G+++ A ++ A DP ++++ +
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV 212
Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPI-- 333
+ E RA+ + RA +P + + AC +E G D A + + + + +
Sbjct: 213 LKEARIFD-RAVAAYLRALSLSPNHAVVHGNLACVYYEQ---GLIDLAIDTYRRAIELQP 268
Query: 334 -------------QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCY 380
+ KG + AE+ ++ A+ P + ++ A + E + ++A+
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ-GNIEEAVRL 327
Query: 381 FERAVQASP--ADSH 393
+ +A++ P A +H
Sbjct: 328 YRKALEVFPEFAAAH 342
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 2e-09
Identities = 36/195 (18%), Positives = 68/195 (34%), Gaps = 22/195 (11%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
A ++++ + P N +L++ RA Y A P A +
Sbjct: 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246
Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335
+E A+ + RA P + A L E G +A++ + L +
Sbjct: 247 YYEQGLID-LAIDTYRRAIELQPHFPDAYCNLANALKEK---GSVAEAEDCYNTALRLCP 302
Query: 336 K---------------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCY 380
G++E A + +A+ P S A V + +AL +
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA-SVLQQQGKLQEALMH 361
Query: 381 FERAVQASP--ADSH 393
++ A++ SP AD++
Sbjct: 362 YKEAIRISPTFADAY 376
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 1e-08
Identities = 30/174 (17%), Positives = 62/174 (35%), Gaps = 22/174 (12%)
Query: 237 NYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALA 296
A + GD AE + +P + + + + ++ R R+ + A
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLD-RSAHFSTLAIKQ 62
Query: 297 APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ---------------SKGDLEG 341
P + + E G+ +A E + L ++ + GD+EG
Sbjct: 63 NPLLAEAYSNLGNVYKER---GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG 119
Query: 342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP--ADSH 393
A + + A+ NP + S L+ L ++A + +A++ P A +
Sbjct: 120 AVQAYVSALQYNPDLYCVRSDLGNLLKAL-GRLEEAKACYLKAIETQPNFAVAW 172
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
EAE+ Y + P H L N A + +++G++ A Y A P + A +
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348
Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMED 316
+ + + Q AL +++ A +P ++ + L EM+D
Sbjct: 349 LQQQGKLQ-EALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 3e-13
Identities = 27/195 (13%), Positives = 60/195 (30%), Gaps = 21/195 (10%)
Query: 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274
+ ++++ P H L + L + + P + SW
Sbjct: 39 KMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98
Query: 275 LVWELHRDQHRALTYFERA-ALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPI 333
+ A Y +A L + A+ + + E D+A + +
Sbjct: 99 YYLMVGHKNEHARRYLSKATTL----EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL 154
Query: 334 QSK---------------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKAL 378
+ + AE +FS+A+ P D +M + + ++ + A
Sbjct: 155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQN-GEWKTAE 213
Query: 379 CYFERAVQASPADSH 393
+F A++ A +
Sbjct: 214 KWFLDALEKIKAIGN 228
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 5e-10
Identities = 25/201 (12%), Positives = 54/201 (26%), Gaps = 31/201 (15%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
+E +D + ++ + A+ D + DP +
Sbjct: 6 PSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGT 65
Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGED-----DKAQEEHIQV 330
+ EL++ + P + A C+ + E KA +
Sbjct: 66 LVELNKAN-ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKA----TTL 120
Query: 331 LP------------IQSKGDLEGAEEYFSRAILANPGDGEIMS----QYAKLVWELHHDH 374
+ + + A + A G M +Y ++
Sbjct: 121 EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT-----NNS 175
Query: 375 DKALCYFERAVQASPADSHVL 395
A +F +A+ +P D V+
Sbjct: 176 KLAERFFSQALSIAPEDPFVM 196
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-08
Identities = 25/180 (13%), Positives = 52/180 (28%), Gaps = 21/180 (11%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
+A Y L + + AE +++ A P D + +
Sbjct: 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV 202
Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQ---VLP 332
++ + A +F A N + DK + V
Sbjct: 203 AFQNGEWK-TAEKWFLDALEKIKAIGN--------------EVTVDKWEPLLNNLGHVC- 246
Query: 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392
+ A +Y +A++ P + S + + + + A+ YF A+ D+
Sbjct: 247 -RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG-NFENAVDYFHTALGLRRDDT 304
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 7e-08
Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 30/173 (17%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ--YA 273
AE ++ + + P P ++ + + G+ AE ++ A G +
Sbjct: 177 LAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236
Query: 274 KLVWEL---HRDQHR---ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEH 327
L+ L R + AL Y +A + PQ+++ +A M
Sbjct: 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM------------- 283
Query: 328 IQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCY 380
G+ E A +YF A+ D ++ + D + +
Sbjct: 284 ---------GNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 27/193 (13%), Positives = 58/193 (30%), Gaps = 31/193 (16%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
+ A Y + + Y + + +A Y A G +
Sbjct: 106 KNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI 165
Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
+ + A +F +A AP+D ++ ++
Sbjct: 166 GLEYGLTNNSKL-AERFFSQALSIAPEDPFVMHEVGVVAFQN------------------ 206
Query: 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQ--YAKL------VWELHHDHDKALCYFERA 384
G+ + AE++F A+ G ++ + L V + +AL Y +A
Sbjct: 207 ----GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA 262
Query: 385 VQASPADSHVLAA 397
+ P ++ +A
Sbjct: 263 LVLIPQNASTYSA 275
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 70.2 bits (171), Expect = 4e-13
Identities = 29/199 (14%), Positives = 59/199 (29%), Gaps = 24/199 (12%)
Query: 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274
EA Y++ ++ +P N A +LQ++G L A +Y A P +++
Sbjct: 26 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 85
Query: 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ 334
+ E+ Q AL + RA P ++ + A +
Sbjct: 86 TLKEMQDVQG-ALQCYTRAIQINPAFADAHSNLASIH----------------------K 122
Query: 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHV 394
G++ A + A+ P + A + + D ++ V
Sbjct: 123 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV-CDWTDYDERMKKLVSIVADQLEK 181
Query: 395 LAAYACFLWETEEDEDDSK 413
+ +
Sbjct: 182 NRLPSVHPHHSMLYPLSHG 200
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 8e-05
Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 2/116 (1%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
D A + Y R I P N A + + G++ A Y A P +++
Sbjct: 92 DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL 151
Query: 273 AKLVWELHRDQHRALTYFERAALAAPQD--SNILAAYACFLWEMEDDGEDDKAQEE 326
A + + + ++ A Q + + + + KA E
Sbjct: 152 AHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAE 207
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 1e-12
Identities = 26/188 (13%), Positives = 57/188 (30%), Gaps = 32/188 (17%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
+A+ ++ ++ P A + Q + + A++ Y A +D + Y
Sbjct: 55 QAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114
Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAY----ACFLWEMEDDGEDDKAQEEHIQVL 331
++E R + A A +
Sbjct: 115 LYEQKRYE-EAYQRLLE-ASQDTLYPERSRVFENLGLVS--------------------- 151
Query: 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP-- 389
A+EYF +++ N + + A L+++ ++ A Y++ Q
Sbjct: 152 --LQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE-REYVPARQYYDLFAQGGGQN 208
Query: 390 ADSHVLAA 397
A S +L
Sbjct: 209 ARSLLLGI 216
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 8e-07
Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 25/146 (17%)
Query: 215 AEAEEYYKRMIDE--YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
EA + + YP + N + + +A++Y+ + + ++
Sbjct: 122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEM 181
Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
A L+++ A Y++ A Q+ A + L I++
Sbjct: 182 ADLLYKEREYV-PARQYYDLFAQGGGQN-----ARSLLLG---------------IRLA- 219
Query: 333 IQSKGDLEGAEEYFSRAILANPGDGE 358
+ D + A Y + PG E
Sbjct: 220 -KVFEDRDTAASYGLQLKRLYPGSLE 244
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
A+A+EY+++ + P + A LL K+ + A YY+ + S +
Sbjct: 156 KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLG 215
Query: 273 AKLVWELHRDQHRALTYFERA 293
+L D+ A +Y +
Sbjct: 216 IRLAKVF-EDRDTAASYGLQL 235
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 2e-12
Identities = 25/201 (12%), Positives = 51/201 (25%), Gaps = 27/201 (13%)
Query: 236 RNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL-------------HRD 282
N + + R Y + + W + A+ + +
Sbjct: 20 SNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 79
Query: 283 QHRALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK----- 336
A +ERA ++ + AYA + + + + I
Sbjct: 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQ 139
Query: 337 --------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388
++ F +A + A + + D A FE ++
Sbjct: 140 YMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY 199
Query: 389 PADSHVLAAYACFLWETEEDE 409
+ AY +L ED
Sbjct: 200 GDIPEYVLAYIDYLSHLNEDN 220
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 2e-12
Identities = 22/164 (13%), Positives = 46/164 (28%), Gaps = 17/164 (10%)
Query: 215 AEAEEYYKRMIDEYPCHPLLL-RNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYA 273
+ Y R++ P L+ Y + ++ + + A ++ A
Sbjct: 116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA 175
Query: 274 KLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPI 333
+ + +D+ A FE + AY +L + +D E + +
Sbjct: 176 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235
Query: 334 QSK----------------GDLEGAEEYFSRAILANPGDGEIMS 361
+ GDL + R A + E
Sbjct: 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKE 279
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 4e-11
Identities = 29/195 (14%), Positives = 53/195 (27%), Gaps = 29/195 (14%)
Query: 216 EAEEYYKRMIDE-YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD-GESWMQYA 273
EA Y+R I + LL YA + + + YN + D ++QY
Sbjct: 82 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYM 141
Query: 274 KLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPI 333
K F++A A ++ A +
Sbjct: 142 KFARR-AEGIKSGRMIFKKAREDARTRHHVYVTAALMEY--------------------- 179
Query: 334 QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSH 393
D A + F + E + Y + ++ + FER + +
Sbjct: 180 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LNEDNNTRVLFERVLTSGSLPPE 238
Query: 394 ----VLAAYACFLWE 404
+ A + F
Sbjct: 239 KSGEIWARFLAFESN 253
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 2e-12
Identities = 28/185 (15%), Positives = 60/185 (32%), Gaps = 15/185 (8%)
Query: 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ 271
++ E E+ + +++ P +LR+ A+ ++K + +A + A P + Q
Sbjct: 227 EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286
Query: 272 ----YAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEH 327
Y V+++ + + + I A A E + +
Sbjct: 287 IGCCYRAKVFQVMNLRENGMYGKRKL------LELIGHAVAHLKKADEANDNLFRVCSIL 340
Query: 328 IQVLPIQSKGDLEGAEEYFSRAILANPGDGE---IMSQYAKLVWELHHDHDKALCYFERA 384
+ E AE YF + + +Y DKA+ +F
Sbjct: 341 ASLH--ALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398
Query: 385 VQASP 389
V+ +
Sbjct: 399 VKINQ 403
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 1e-11
Identities = 34/209 (16%), Positives = 60/209 (28%), Gaps = 12/209 (5%)
Query: 210 NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYRAEDYYNHATMADPGD 265
N+ S A + ++ I P + L A L K + E A PG
Sbjct: 187 NWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246
Query: 266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE 325
+ AK +A+ ++A P ++ + C
Sbjct: 247 TDVLRSAAKFYRRKDEPD-KAIELLKKALEYIPNNAYLHCQIGCCYRAK---VFQVMNLR 302
Query: 326 EHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAV 385
E+ + + A + +A AN + S A L +++A YF++
Sbjct: 303 ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD-QYEEAEYYFQKEF 361
Query: 386 QASPADSHVLAA---YACFLWETEEDEDD 411
Y F + ED
Sbjct: 362 SKELTPVAKQLLHLRYGNFQLYQMKCEDK 390
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 61.9 bits (150), Expect = 2e-10
Identities = 34/219 (15%), Positives = 72/219 (32%), Gaps = 31/219 (14%)
Query: 216 EAEEYYKRM--IDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM-----ADPGDGES 268
+AEE ++ + NYA + G L + Y + + P ES
Sbjct: 76 KAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIES 135
Query: 269 WMQYAKLVWELHRDQH----RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ 324
+ W + RA FE+A P++ + A + +++ A
Sbjct: 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAI 195
Query: 325 EEHIQVLPI-------------------QSKGDLEGAEEYFSRAILANPGDGEIMSQYAK 365
+ Q + + + + E+ A+ PG +++ AK
Sbjct: 196 DPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAK 255
Query: 366 LVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404
+ DKA+ ++A++ P ++++ C
Sbjct: 256 FYRRK-DEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA 293
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 1e-09
Identities = 29/219 (13%), Positives = 74/219 (33%), Gaps = 46/219 (21%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAE---DYYNHATMADPGDGESWMQY 272
A+ +++ +++ P +P A + + ++ D A +P + +
Sbjct: 156 RAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLL 215
Query: 273 AKLVWELHRDQHR---ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQ 329
A + ++ + E A AP +++L + A F
Sbjct: 216 ALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFY------------------ 257
Query: 330 VLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ----YAKLVWELHHDHD---------- 375
+ K + + A E +A+ P + + Q Y V+++ + +
Sbjct: 258 ----RRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313
Query: 376 ----KALCYFERAVQASPADSHVLAAYACFLWETEEDED 410
A+ + ++A +A+ V + A ++ E+
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 9e-09
Identities = 29/199 (14%), Positives = 58/199 (29%), Gaps = 27/199 (13%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGD-------------------LYRAEDYYN 256
+A E K+ ++ P + L + K + A +
Sbjct: 265 KAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLK 324
Query: 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMED 316
A A+ A L + + A YF++ + +
Sbjct: 325 KADEANDNLFRVCSILASLHALADQYE-EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLY 383
Query: 317 DGED-DKAQEEHIQVLPIQSK-----GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL 370
+ DKA I+ + I K + ++ + N D E + A + EL
Sbjct: 384 QMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLA-FLQEL 442
Query: 371 HHDHDKALCYFERAVQASP 389
+ +A ER +++
Sbjct: 443 NEKMQQADEDSERGLESGS 461
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 4e-12
Identities = 30/185 (16%), Positives = 52/185 (28%), Gaps = 29/185 (15%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
D +A + + P + L A++ Q +A++ + A P E Y
Sbjct: 23 DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82
Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA----CFLWEMEDDGEDDKAQEEHI 328
+ ++ YF++ ALA P A C
Sbjct: 83 GWFLCGRLNRPAESMAYFDK-ALADPTYPTPYIANLNKGICS------------------ 123
Query: 329 QVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388
+G AE Y R++ A P + A+ A YF++
Sbjct: 124 -----AKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA-GQLGDADYYFKKYQSRV 177
Query: 389 PADSH 393
Sbjct: 178 EVLQA 182
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 2e-11
Identities = 29/241 (12%), Positives = 70/241 (29%), Gaps = 18/241 (7%)
Query: 185 YLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK 244
YLA + + + A ++ P D A + + + Q+
Sbjct: 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKL-EASMCYLRGQVYTN 212
Query: 245 KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNIL 304
+ RA++ Y A M D E++ Q L D+ L + + +D+ L
Sbjct: 213 LSNFDRAKECYKEALMVDAKCYEAFDQLVSN-HLLTADEEWDLVLKLNYSTYSKEDAAFL 271
Query: 305 AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK---------------GDLEGAEEYFSRA 349
+ ++ + E+++ + K ++
Sbjct: 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKI 331
Query: 350 ILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDE 409
+ +P + ++ + + E +K V P + A + +
Sbjct: 332 LEIDPYNLDVYPLHLASLHESGE-KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKIS 390
Query: 410 D 410
+
Sbjct: 391 E 391
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 7e-11
Identities = 28/200 (14%), Positives = 62/200 (31%), Gaps = 22/200 (11%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK- 274
+ ++++ P + + + L + G+ + N P +W A
Sbjct: 323 DVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTW--LAVG 380
Query: 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ 334
+ + A YF +++ PQ +A GE D+A + +
Sbjct: 381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIE---GEHDQAISAYTTAARLF 437
Query: 335 SK---------------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALC 379
G++ A EY + D ++++ +V D A+
Sbjct: 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELG-VVAFNKSDMQTAIN 496
Query: 380 YFERAVQASPADSHVLAAYA 399
+F+ A+ +A
Sbjct: 497 HFQNALLLVKKTQSNEKPWA 516
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 2e-10
Identities = 22/198 (11%), Positives = 49/198 (24%), Gaps = 20/198 (10%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
D E Y I+ LL A L + DP + + + +
Sbjct: 286 DELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLH 345
Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
+ E + P+ + A + + + +A+ +
Sbjct: 346 LASLHESGEKN-KLYLISNDLVDRHPEKAVTWLAVGIYYLCV---NKISEARRYFSKSST 401
Query: 333 IQSK---------------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKA 377
+ + G+ + A ++ A G + + A
Sbjct: 402 MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG-MQHMQLGNILLA 460
Query: 378 LCYFERAVQASPADSHVL 395
Y + + D +L
Sbjct: 461 NEYLQSSYALFQYDPLLL 478
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 30/197 (15%), Positives = 56/197 (28%), Gaps = 37/197 (18%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESW----MQ 271
EA Y+ + P +A +G+ +A Y A G + MQ
Sbjct: 391 EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQ 450
Query: 272 YAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331
+ +L + A Y + + D +L +
Sbjct: 451 HMQL-----GNILLANEYLQSSYALFQYDPLLLNELGVVAFNK----------------- 488
Query: 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL------VWELHHDHDKALCYFERAV 385
D++ A +F A+L +A + +D A+ + +
Sbjct: 489 -----SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543
Query: 386 QASPADSHVLAAYACFL 402
S D++V A A
Sbjct: 544 LLSTNDANVHTAIALVY 560
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 9e-08
Identities = 21/150 (14%), Positives = 42/150 (28%), Gaps = 30/150 (20%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA-------TMADPGDGES 268
A EY + + PLLL + K D+ A +++ +A + +
Sbjct: 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518
Query: 269 WMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI 328
W +L A+ + L + D+N+ A A
Sbjct: 519 WANLGHAYRKLKMYD-AAIDALNQGLLLSTNDANVHTAIALVYLHK-------------- 563
Query: 329 QVLPIQSKGDLEGAEEYFSRAILANPGDGE 358
A + ++ +P +
Sbjct: 564 --------KIPGLAITHLHESLAISPNEIM 585
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 2e-11
Identities = 25/181 (13%), Positives = 56/181 (30%), Gaps = 9/181 (4%)
Query: 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274
A+A + +D P + + A + G A + +Q
Sbjct: 20 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79
Query: 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ 334
L+ + + A F++ + P + A + + + D+ Q Q L
Sbjct: 80 LLLKQGKLD-EAEDDFKKVLKSNPSEQEEKEAESQLV-------KADEMQRLRSQALDAF 131
Query: 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHV 394
D A + + + D E+ A+ + + KA+ + A + ++
Sbjct: 132 DGADYTAAITFLDKILEVCVWDAELRELRAECFIKE-GEPRKAISDLKAASKLKSDNTEA 190
Query: 395 L 395
Sbjct: 191 F 191
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 5e-09
Identities = 23/188 (12%), Positives = 59/188 (31%), Gaps = 24/188 (12%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
A + ++++ L A+ K+G+ +A A+ + E++ + + L
Sbjct: 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTL 197
Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335
++L + +L+ +A + + + + A+E
Sbjct: 198 YYQLGDHE-LSLSEVRECLKLDQDHKR---CFAHYKQVKKLNKLIESAEEL-------IR 246
Query: 336 KGDLEGAEEYFSRAILANPGDGEIMSQ--------YAKLVWELHHDHDKALCYFERAVQA 387
G A + + P E + ++K +A+ +Q
Sbjct: 247 DGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD-----EKPVEAIRICSEVLQM 301
Query: 388 SPADSHVL 395
P + + L
Sbjct: 302 EPDNVNAL 309
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 24/176 (13%), Positives = 45/176 (25%), Gaps = 37/176 (21%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
+A K + + L + GD + D + Y K
Sbjct: 172 KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY-KQ 230
Query: 276 VWELHRDQHRALTYFE----RAALAA--------PQDSNILA-AY----ACFLWEMEDDG 318
V +L++ A A + P + + CF D
Sbjct: 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS----KDE 286
Query: 319 EDDKAQEEHIQVLPIQSK---------------GDLEGAEEYFSRAILANPGDGEI 359
+ +A +VL ++ + A + + A N D +I
Sbjct: 287 KPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 4e-11
Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 11/177 (6%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
EA ++ + P R+ + A NHA M DP D A
Sbjct: 39 EAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98
Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335
H AL L+ PQ + + +++D + +
Sbjct: 99 HTNEHNAN-AALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED-------FFFAA 150
Query: 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAK-LVWELHHDHDKALCYFERAVQASPAD 391
+ A+ NP D ++ + +++ L +++D A RAV+ P D
Sbjct: 151 PNEYRECRTLLHAALEMNPNDAQL--HASLGVLYNLSNNYDSAAANLRRAVELRPDD 205
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 25/223 (11%), Positives = 52/223 (23%), Gaps = 37/223 (16%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
A P + A + + A ++ P + +
Sbjct: 73 LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA 132
Query: 276 VWELHRDQH--------------RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321
++ T A P D+ + A+ D
Sbjct: 133 DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS---NNYD 189
Query: 322 KAQEEHIQVLPIQSK---------------GDLEGAEEYFSRAILANPGDGEIMSQYAKL 366
A + + ++ + A + ++RA+ NPG +M A
Sbjct: 190 SAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249
Query: 367 VWELHHDHDKALCYFERAVQASP----ADSHVLAAYACFLWET 405
+ +D A RA+ +W+
Sbjct: 250 YSNM-SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDF 291
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 5e-11
Identities = 26/195 (13%), Positives = 62/195 (31%), Gaps = 9/195 (4%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
+A + +D P + + A + G A + +Q L
Sbjct: 44 DALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103
Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335
+ + + A F++ + P ++ A + + + D+ Q Q L
Sbjct: 104 LLKQGKLD-EAEDDFKKVLKSNPSENEEKEAQSQLI-------KSDEMQRLRSQALNAFG 155
Query: 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL 395
GD A + + + D E+ A+ + + KA+ + A + ++
Sbjct: 156 SGDYTAAIAFLDKILEVCVWDAELRELRAECFIKE-GEPRKAISDLKAASKLKNDNTEAF 214
Query: 396 AAYACFLWETEEDED 410
+ ++ + E
Sbjct: 215 YKISTLYYQLGDHEL 229
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 8e-10
Identities = 25/203 (12%), Positives = 59/203 (29%), Gaps = 24/203 (11%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
A + ++++ L A+ K+G+ +A A+ + E++ + + L
Sbjct: 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTL 220
Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335
++L D +L+ A Y + ++
Sbjct: 221 YYQL-GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR---------- 269
Query: 336 KGDLEGAEEYFSRAILANPGDGEIMSQ--------YAKLVWELHHDHDKALCYFERAVQA 387
G A + + P E + ++K +A+ +Q
Sbjct: 270 DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD-----EKPVEAIRVCSEVLQM 324
Query: 388 SPADSHVLAAYACFLWETEEDED 410
P + + L A E ++
Sbjct: 325 EPDNVNALKDRAEAYLIEEMYDE 347
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 4e-07
Identities = 28/200 (14%), Positives = 56/200 (28%), Gaps = 37/200 (18%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
S A ++I LL K+G L AED + ++P + E
Sbjct: 75 KSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQ 134
Query: 273 AKLVWELHRDQH--------------RALTYFERAALAAPQDSNILAAYACFLWEMEDDG 318
++L+ + A+ + ++ D+ + A +
Sbjct: 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKE---- 190
Query: 319 EDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKAL 378
G+ A A + E + + L ++L DH+ +L
Sbjct: 191 ------------------GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL-GDHELSL 231
Query: 379 CYFERAVQASPADSHVLAAY 398
++ A Y
Sbjct: 232 SEVRECLKLDQDHKRCFAHY 251
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 29/211 (13%), Positives = 54/211 (25%), Gaps = 30/211 (14%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
+A K + + L + GD + D + Y K
Sbjct: 195 KAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY-KQ 253
Query: 276 VWELHRDQHRALTYFE----RAALAA--------PQDSNILAAYACFL-WEMEDDGEDDK 322
V +L++ A A + P + + D + +
Sbjct: 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313
Query: 323 AQEEHIQVLPIQSK---------------GDLEGAEEYFSRAILANPGDGEIMSQYAKLV 367
A +VL ++ + A + + A N D +I K
Sbjct: 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQ 373
Query: 368 WELHHDHDKALCYFERAVQASPADSHVLAAY 398
L K Y V+ + ++ AY
Sbjct: 374 RLL-KQSQKRDYYKILGVKRNAKKQEIIKAY 403
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 25/173 (14%), Positives = 45/173 (26%), Gaps = 27/173 (15%)
Query: 216 EAEEYYKRMIDEYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ 271
+A Y+ ++ P K A + +P + +
Sbjct: 275 DATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD 334
Query: 272 YAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331
A+ A+ +E A D I KAQ
Sbjct: 335 RAEAYLIE-EMYDEAIQDYETAQEHNENDQQIREGLE-------------KAQRL----- 375
Query: 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384
+ + Y + N EI+ Y KL + H D+ + ++A
Sbjct: 376 ----LKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKA 424
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 6e-11
Identities = 20/179 (11%), Positives = 49/179 (27%), Gaps = 24/179 (13%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
D E Y+ + L A +K + +A +Y P + +
Sbjct: 36 DRTEMY-YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEAC 94
Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
A++ +++ AL +E+ + + + E +K
Sbjct: 95 AEMQVCRGQEK-DALRMYEKILQLEADNLAANIFLGNYYYLT---AEQEKK--------- 141
Query: 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391
E + + + + L ++KA ++ + P+
Sbjct: 142 ---------KLETDYKKLSSPTKMQYARYRDG-LSKLFTTRYEKARNSLQKVILRFPST 190
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-06
Identities = 16/191 (8%), Positives = 38/191 (19%), Gaps = 37/191 (19%)
Query: 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHR--------- 285
+ + G +A Y+ + E + +
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66
Query: 286 ------ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDL 339
A +++ AP + + L A A G
Sbjct: 67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR----------------------GQE 104
Query: 340 EGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYA 399
+ A + + + + + K L + + + +
Sbjct: 105 KDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDG 164
Query: 400 CFLWETEEDED 410
T E
Sbjct: 165 LSKLFTTRYEK 175
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 5e-06
Identities = 19/151 (12%), Positives = 51/151 (33%), Gaps = 8/151 (5%)
Query: 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE 326
+ +Q E ++ +A++YF + + + + W D + ++
Sbjct: 5 DEMLQKVSAAIEAGQNG-QAVSYFRQTIALNIDRTEM------YYWTNVDKNSEISSKLA 57
Query: 327 HIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQ 386
L + + + A ++ + P + + + A++ AL +E+ +Q
Sbjct: 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRG-QEKDALRMYEKILQ 116
Query: 387 ASPADSHVLAAYACFLWETEEDEDDSKSSDQ 417
+ + + T E E +D
Sbjct: 117 LEADNLAANIFLGNYYYLTAEQEKKKLETDY 147
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 63.0 bits (152), Expect = 6e-11
Identities = 25/201 (12%), Positives = 52/201 (25%), Gaps = 27/201 (13%)
Query: 236 RNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD------------- 282
N + + R Y + + W + A+ + + +
Sbjct: 242 SNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 301
Query: 283 QHRALTYFERAALAAPQDS-NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS------ 335
A +ERA + + + AYA + + + + I
Sbjct: 302 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQ 361
Query: 336 -------KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388
++ F +A + A + + D A FE ++
Sbjct: 362 YMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY 421
Query: 389 PADSHVLAAYACFLWETEEDE 409
+ AY +L ED
Sbjct: 422 GDIPEYVLAYIDYLSHLNEDN 442
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 63.0 bits (152), Expect = 7e-11
Identities = 23/180 (12%), Positives = 49/180 (27%), Gaps = 26/180 (14%)
Query: 216 EAEEYYKRMID-EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274
+ Y R++ E L+ Y + ++ + + A ++ A
Sbjct: 339 KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 398
Query: 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ 334
+ + +D+ A FE + AY +L +
Sbjct: 399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL-------------------- 438
Query: 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAK--LVWELHH-DHDKALCYFERAVQASPAD 391
+ F R + + E + L +E + D L +R A +
Sbjct: 439 --NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 6e-07
Identities = 15/126 (11%), Positives = 33/126 (26%), Gaps = 6/126 (4%)
Query: 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-KGDLYRAEDYYNHATMADPGDGESWM 270
+ +K+ ++ + A + D A + E +
Sbjct: 370 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL 429
Query: 271 QYAKLVWELHRDQHRALTYFERA----ALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE 326
Y + + + FER +L + I A + F + D K ++
Sbjct: 430 AYIDYLSH-LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488
Query: 327 HIQVLP 332
Sbjct: 489 RFTAFR 494
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 3e-04
Identities = 20/167 (11%), Positives = 46/167 (27%), Gaps = 19/167 (11%)
Query: 221 YKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH 280
++ ++E P + Q + +A Y P G W Y +
Sbjct: 2 AEKKLEENPYDLDAWSILIREAQN-QPIDKARKTYERLVAQFPSSGRFWKLYIEA-EIKA 59
Query: 281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340
++ + F+R L ++ Y ++ E + K + +
Sbjct: 60 KNYDKVEKLFQR-CLMKVLHIDLWKCYLSYVRETKGKLPSYKEK--------------MA 104
Query: 341 GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387
A ++ I +I Y + + + +R
Sbjct: 105 QAYDFALDKIGMEIMSYQIWVDYIN--FLKGVEAVGSYAENQRITAV 149
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 8e-11
Identities = 26/177 (14%), Positives = 51/177 (28%), Gaps = 9/177 (5%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
A ++ + + P H + + A P + + M A
Sbjct: 82 NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 141
Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335
+ +A P YA + E+ + + S
Sbjct: 142 FTNESLQR-QACEILRDWLRYTPA-------YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193
Query: 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAK-LVWELHHDHDKALCYFERAVQASPAD 391
+E F A+ +P + Q +++ L ++DKA+ F A+ P D
Sbjct: 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 250
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 31/208 (14%), Positives = 68/208 (32%), Gaps = 23/208 (11%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
DS E Y+ + + + + + Q+ + +A ++ A DP + ++Q
Sbjct: 285 DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344
Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMED--------------DG 318
A L + ++ T F A P+ + +A L + D +
Sbjct: 345 ACLAYRENKFD-DCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403
Query: 319 EDDKA-------QEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH 371
+ D + + + + A +A +P + A++ +
Sbjct: 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ- 462
Query: 372 HDHDKALCYFERAVQASPADSHVLAAYA 399
D D+A+ FE + + L A
Sbjct: 463 EDIDEAITLFEESADLARTMEEKLQAIT 490
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 7e-09
Identities = 28/192 (14%), Positives = 64/192 (33%), Gaps = 21/192 (10%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
E + + L + K D A + A P S++ A +
Sbjct: 221 EQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALI 279
Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335
+ + + YF++A +S++ + + D+A ++ + +
Sbjct: 280 MADRNDST-EYYNYFDKALKLDSNNSSVYYHRGQMNFIL---QNYDQAGKDFDKAKELDP 335
Query: 336 K---------------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCY 380
+ + E FS A P E+ + +A+++ + +D DKAL
Sbjct: 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDK-NDFDKALKQ 394
Query: 381 FERAVQASPADS 392
++ A++
Sbjct: 395 YDLAIELENKLD 406
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 61.2 bits (147), Expect = 3e-10
Identities = 25/191 (13%), Positives = 50/191 (26%), Gaps = 3/191 (1%)
Query: 221 YKRMIDEYPCHPLLLRNYAQ-LLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL 279
Y + P + N A +K D Y P ++ +EL
Sbjct: 332 YMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQ-YEL 390
Query: 280 HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDL 339
+ T D L + + + + ++ L
Sbjct: 391 NTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGL 450
Query: 340 EGAEEYFSRAILANPGDG-EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAY 398
+ + F + +I + A + + + D A E ++ D + Y
Sbjct: 451 AASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKY 510
Query: 399 ACFLWETEEDE 409
FL E+
Sbjct: 511 LDFLIYVNEES 521
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 47.0 bits (110), Expect = 9e-06
Identities = 20/175 (11%), Positives = 48/175 (27%), Gaps = 17/175 (9%)
Query: 202 EVVDLIMPNFDDSAEAEEYYKRMIDE-YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260
+D I + E + + I++ + Y +++ L + +
Sbjct: 403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462
Query: 261 ADPGDG-ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGE 319
+ +++ A + + + +D A E D + Y FL + ++ +
Sbjct: 463 LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQ 522
Query: 320 DDKAQEEHIQVLPIQSK---------------GDLEGAEEYFSRAILANPGDGEI 359
E I + G L R P ++
Sbjct: 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 43.9 bits (102), Expect = 8e-05
Identities = 17/201 (8%), Positives = 51/201 (25%), Gaps = 19/201 (9%)
Query: 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ 271
D ++ MI+E P L + + + ++ P W
Sbjct: 46 RDESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCM 105
Query: 272 YAKLVWELHR--DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQ 329
L ++ D R ++++ + + + + +E
Sbjct: 106 RLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNI 165
Query: 330 VLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLV--------WELHHDHDKALCYF 381
V ++ + + + P + ++Y + +E +
Sbjct: 166 V--------IQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLY 217
Query: 382 ERAVQASPADSHVL-AAYACF 401
+ + + Y +
Sbjct: 218 KTLLCQPMDCLESMWQRYTQW 238
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 1e-09
Identities = 15/163 (9%), Positives = 47/163 (28%), Gaps = 21/163 (12%)
Query: 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAA 294
R+ + + A+P + E W + D +L + +A
Sbjct: 13 QRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQ-NDYSNSLLAYRQAL 71
Query: 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP 354
+++ + AA A L+ + + +A+ +
Sbjct: 72 QLRGENAELYAALATVLYYQASQHMTAQTR-------------------AMIDKALALDS 112
Query: 355 GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAA 397
+ + A + ++ +A+ +++ + + +
Sbjct: 113 NEITALMLLA-SDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 12/121 (9%), Positives = 36/121 (29%), Gaps = 6/121 (4%)
Query: 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLY---RAEDYYNHATMADPGDGES 268
+D + + Y++ + + L A +L + + + + A D + +
Sbjct: 58 NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA 117
Query: 269 WMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA--CFLWEMEDDGEDDKAQEE 326
M A + +A+ +++ N ++ + +
Sbjct: 118 LMLLASDAFMQANYA-QAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSDLEHHHHH 176
Query: 327 H 327
H
Sbjct: 177 H 177
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 4e-04
Identities = 15/88 (17%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 334 QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSH 393
S+ + E + I ANP + E + + + D+ +L + +A+Q ++
Sbjct: 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQN-DYSNSLLAYRQALQLRGENAE 79
Query: 394 VLAAYACFLWETEEDEDDSKSSDQFQQV 421
+ AA A L+ +++ +
Sbjct: 80 LYAALATVLYYQASQHMTAQTRAMIDKA 107
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-09
Identities = 22/177 (12%), Positives = 47/177 (26%), Gaps = 14/177 (7%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
+ + I + P + + + A P + ++ M A
Sbjct: 83 VTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142
Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335
Q A + P+ ++ +
Sbjct: 143 YTNTSHQQ-DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS------------PVD 189
Query: 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAK-LVWELHHDHDKALCYFERAVQASPAD 391
LEG +E + A N + Q +++ L + ++A+ F A+ P D
Sbjct: 190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 23/158 (14%), Positives = 49/158 (31%), Gaps = 17/158 (10%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
A E + +++ P + N L G A+D DP D +
Sbjct: 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY-- 152
Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPI-- 333
+ E D+ +A ++ + ++ +L + + ++ + + +
Sbjct: 153 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAE 212
Query: 334 -------------QSKGDLEGAEEYFSRAILANPGDGE 358
S GDL+ A F A+ N +
Sbjct: 213 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 8e-09
Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 22/191 (11%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
A+E +++ P + A LL K+G +E ++N + P E +A
Sbjct: 328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFA-- 385
Query: 276 VWELHRDQHR---ALTYFERAALAAPQD----SNILAAYACFLWEMEDDGEDDKAQEEHI 328
E+ D+ A+ ++ A I G+ +
Sbjct: 386 --EILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI----------GKATILARQSS 433
Query: 329 QVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388
Q + A + ++A +P + A+L ++ D+A+ FE + +
Sbjct: 434 QDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME-KIDEAIELFEDSAILA 492
Query: 389 PADSHVLAAYA 399
L A
Sbjct: 493 RTMDEKLQATT 503
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 25/192 (13%), Positives = 58/192 (30%), Gaps = 21/192 (10%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
L L K +L A+ + P S++ A
Sbjct: 227 SLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALT 285
Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335
+ + Q +F++A P+ + + + A+E+ + +
Sbjct: 286 LADKENSQ-EFFKFFQKAVDLNPEYPPTYYHRGQMYFIL---QDYKNAKEDFQKAQSLNP 341
Query: 336 K---------------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCY 380
+ G +E +F+ L P E+ + +A+++ + D D A+
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR-GDFDTAIKQ 400
Query: 381 FERAVQASPADS 392
++ A +
Sbjct: 401 YDIAKRLEEVQE 412
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 29/220 (13%), Positives = 61/220 (27%), Gaps = 26/220 (11%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
EA +YY+ I+ P P+ N + GDL + ++ A P ++ ++ A
Sbjct: 43 EAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102
Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ----------- 324
L A+ +L D + + ++
Sbjct: 103 NESLGNFT-DAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVL 161
Query: 325 -------------EEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAK-LVWEL 370
+ H++V + + + + A S A+ + A L+ +
Sbjct: 162 PSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221
Query: 371 HHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410
+ L + L F + D
Sbjct: 222 TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 26/206 (12%), Positives = 57/206 (27%), Gaps = 30/206 (14%)
Query: 216 EAEEYYKRMI----DEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ 271
E ++ + + + L+N + A YY +A DP + +
Sbjct: 5 NGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSN 64
Query: 272 YAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331
+ + + + + +A P S L A +
Sbjct: 65 ISACYISTGDLE-KVIEFTTKALEIKPDHSKALLRRASANESL----------------- 106
Query: 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVW---ELHHDHDKALCYFERAVQAS 388
G+ A S L DG + + + ++ R Q
Sbjct: 107 -----GNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVL 161
Query: 389 PADSHVLAAYACFLWETEEDEDDSKS 414
P+++ + + + F E ++ S
Sbjct: 162 PSNTSLASFFGIFDSHLEVSSVNTSS 187
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-08
Identities = 14/92 (15%), Positives = 25/92 (27%), Gaps = 1/92 (1%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
E + M+ + + LL + + A + A DP +W K
Sbjct: 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62
Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAY 307
+ A +E AA +
Sbjct: 63 LQGQGDRA-GARQAWESGLAAAQSRGDQQVVK 93
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 55.1 bits (132), Expect = 1e-08
Identities = 23/164 (14%), Positives = 37/164 (22%), Gaps = 23/164 (14%)
Query: 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQ-HR 285
+ Q+L K L A D + + A + ++
Sbjct: 125 HQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184
Query: 286 ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY 345
A F+ A +L A G E AE
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQ----------------------GRWEAAEGV 222
Query: 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389
A+ + G E + L L + Y + A
Sbjct: 223 LQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 3e-08
Identities = 18/89 (20%), Positives = 28/89 (31%)
Query: 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ 271
+ +A ++ M D+ LLL A +G AE A D G E+ +
Sbjct: 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239
Query: 272 YAKLVWELHRDQHRALTYFERAALAAPQD 300
L L + Y + A
Sbjct: 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 1e-08
Identities = 21/177 (11%), Positives = 53/177 (29%), Gaps = 27/177 (15%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA---DPGDGESWMQY 272
EA E + ++ + P + A + A+ + Y
Sbjct: 21 EAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80
Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
K++ + +D A+ ++ A ++ +
Sbjct: 81 GKILMKKGQDS-LAIQQYQAAVDRDTTRLDMYGQIGSYF--------------------- 118
Query: 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389
+KG+ A +Y + I D ++ + + + ++ KA F + ++ P
Sbjct: 119 -YNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN-KEYVKADSSFVKVLELKP 173
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 6e-06
Identities = 30/208 (14%), Positives = 56/208 (26%), Gaps = 29/208 (13%)
Query: 210 NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESW 269
+D + + E Y ++ Y ++L KKG A Y A D + +
Sbjct: 52 KYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY 111
Query: 270 MQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQ 329
Q + A+ Y E+ D + + E KA ++
Sbjct: 112 GQIGSYFYNKGNFP-LAIQYMEKQIRPTTTDPKVFYELGQAYYYN---KEYVKADSSFVK 167
Query: 330 VLPI------------------QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVW--- 368
VL + A+ Y+ + I G
Sbjct: 168 VLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYI 227
Query: 369 ----ELHHDHDKALCYFERAVQASPADS 392
++ D KA ++ + P +
Sbjct: 228 AYYYTINRDKVKADAAWKNILALDPTNK 255
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 18/161 (11%), Positives = 39/161 (24%), Gaps = 16/161 (9%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
A +Y ++ I P + Q + +A+ + P ++ A+
Sbjct: 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARA 185
Query: 276 VWEL--HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPI 333
Q A Y+E+
Sbjct: 186 NAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEAN--------------EYIAYYY 231
Query: 334 QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDH 374
D A+ + + +P + + + + HH H
Sbjct: 232 TINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHHH 272
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 21/196 (10%), Positives = 46/196 (23%), Gaps = 14/196 (7%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
+ P + + ++ Q + R A P + +
Sbjct: 87 TVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH 146
Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
L Q L +A P+ +A+ +E + + P
Sbjct: 147 DGGKQALETVQ-ALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 205
Query: 333 ------------IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCY 380
Q+ ++ +A P ++ L + L
Sbjct: 206 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQAL-ETVQRLLPV 264
Query: 381 FERAVQASPADSHVLA 396
+A +P +A
Sbjct: 265 LCQAHGLTPQQVVAIA 280
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 1e-07
Identities = 22/194 (11%), Positives = 46/194 (23%), Gaps = 20/194 (10%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
+ P + + + + Q + R A P +
Sbjct: 257 TVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 316
Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
L Q R L +A PQ +A++ +E + Q
Sbjct: 317 GGGKQALETVQ-RLLPVLCQAHGLTPQQVVAIASHDGGKQALET---VQRLLPVLCQAHG 372
Query: 333 I---------------QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKA 377
+ Q+ ++ +A P ++ + L +
Sbjct: 373 LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQAL-ETVQRL 431
Query: 378 LCYFERAVQASPAD 391
L +A +P
Sbjct: 432 LPVLCQAHGLTPQQ 445
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 23/193 (11%), Positives = 48/193 (24%), Gaps = 15/193 (7%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
+ P + + + Q + R A P + +
Sbjct: 294 RLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGG 353
Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP--- 332
L Q R L +A P+ +A+ +E + + P
Sbjct: 354 KQALETVQ-RLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQV 412
Query: 333 ---------IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER 383
Q+ ++ +A P ++ L L +
Sbjct: 413 VAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPAL-ESIVAQLSRPDP 471
Query: 384 AVQASPADSHVLA 396
A+ A + H++A
Sbjct: 472 ALAALT-NDHLVA 483
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 20/177 (11%), Positives = 43/177 (24%), Gaps = 24/177 (13%)
Query: 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274
A ++ P + + ++ Q + R A P + +
Sbjct: 55 AWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDG 114
Query: 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ 334
L Q R L +A P+ +A++ Q
Sbjct: 115 GKQALETVQ-RLLPVLCQAHGLTPEQVVAIASHDGGK----------------------Q 151
Query: 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391
+ ++ +A P ++ L + L +A +P
Sbjct: 152 ALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQAL-ETVQRLLPVLCQAHGLTPQQ 207
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 1e-07
Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 13/113 (11%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQL---LQKKGDLYRAEDYYNHATMADPGDGESW 269
A+A YY++ I L Y L + G+ +AE + P
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 270 MQYAKLVWELHRDQHRALTYFERAALAAPQDSNI------LAAYACFL---WE 313
+ YA +V + + + D I + YA L W+
Sbjct: 65 VFYA-MVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADKLDETWK 116
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-05
Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 10/81 (12%)
Query: 334 QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSH 393
++ G+ AE + + P + YA +V +++ + + + + D
Sbjct: 38 RTLGEYRKAEAVLANGVKQFPNHQALRVFYA-MVLYNLGRYEQGVELLLKIIAETSDDET 96
Query: 394 V------LAAYACFL---WET 405
+ + YA L W+
Sbjct: 97 IQSYKQAILFYADKLDETWKA 117
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 2e-07
Identities = 30/208 (14%), Positives = 60/208 (28%), Gaps = 35/208 (16%)
Query: 208 MPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE 267
P++ EAE + + P ++ KKGD+ A ++ A +
Sbjct: 115 TPDYSP--EAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK-NKV 171
Query: 268 SWMQYAKLVWELHRDQH--------RALTYFERAALAAPQDSNI-----LAAYACFLWEM 314
S + ++ +L D ++ + A D A + +
Sbjct: 172 SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTG 231
Query: 315 EDDGEDDKAQEEHIQVLPIQSK------------------GDLEGAEEYFSRAILANPGD 356
++ +A + Q + K A E FS+A +P
Sbjct: 232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW 291
Query: 357 GEIMSQYAKLVWELHHDHDKALCYFERA 384
E + +L+ L L +
Sbjct: 292 PEPQQREQQLLEFL-SRLTSLLESKGKT 318
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 1e-06
Identities = 21/233 (9%), Positives = 53/233 (22%), Gaps = 38/233 (16%)
Query: 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256
D E ++ + ++ + H + + + ++ +
Sbjct: 36 MADEEEEAKHVLQKLQGLVDRLYCFRDSY--FETHSVE-DAGRKQQDVQEEMEKTLQQME 92
Query: 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMED 316
+ + ++ M K + A +A P+ W+
Sbjct: 93 EVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK-- 150
Query: 317 DGEDDKAQEEHIQVLPI-----------------------QSKGDLEGAEEYFSRAILAN 353
G+ A L + + + A+ +
Sbjct: 151 -GDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD 209
Query: 354 PGDGEI--------MSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAY 398
DG +S Y +AL + +A + S +
Sbjct: 210 VLDGRSWYILGNAYLSLYFNTGQNP-KISQQALSAYAQAEKVDRKASSNPDLH 261
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 3e-07
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 1/94 (1%)
Query: 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274
+A++ ++ + Q G +A Y++ + D + A+
Sbjct: 35 DDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAE 94
Query: 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308
+L A + F A A A A
Sbjct: 95 CHLQLGDLD-GAESGFYSARALAAAQPAHEALAA 127
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 3e-07
Identities = 22/159 (13%), Positives = 42/159 (26%), Gaps = 26/159 (16%)
Query: 221 YKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH 280
+ L + G A+ + M D D ++ +
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLG-ACRQSL 65
Query: 281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340
+AL + AL + A ++ GDL+
Sbjct: 66 GLYEQALQSYSYGALMDINEPRFPFHAAECHLQL----------------------GDLD 103
Query: 341 GAEEYFSRAIL---ANPGDGEIMSQYAKLVWELHHDHDK 376
GAE F A A P + ++ ++ + D+
Sbjct: 104 GAESGFYSARALAAAQPAHEALAARAGAMLEAVTARKDR 142
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 4e-05
Identities = 21/138 (15%), Positives = 33/138 (23%), Gaps = 24/138 (17%)
Query: 262 DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321
E ++ A F+ + D+
Sbjct: 14 SEDTLEQLYALGFNQYQA-GKWDDAQKIFQALCMLDHYDARYFLGLGACR---------- 62
Query: 322 KAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYF 381
QS G E A + +S L + + A+ +L D D A F
Sbjct: 63 ------------QSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLG-DLDGAESGF 109
Query: 382 ERAVQASPADSHVLAAYA 399
A + A A A
Sbjct: 110 YSARALAAAQPAHEALAA 127
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 4e-07
Identities = 31/203 (15%), Positives = 63/203 (31%), Gaps = 32/203 (15%)
Query: 215 AEAEEYYKRMIDEYP----CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWM 270
+ ++ P + + GD +A + + A + D ++
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61
Query: 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY---ACFLWEMEDDGEDDKAQEEH 327
+A L+ ++ + RAL ++++A + AY +A++
Sbjct: 62 NFANLLSSVNELE-RALAFYDKALELDSSAAT---AYYGAGNVYVVK---EMYKEAKDMF 114
Query: 328 IQVLPI---------------QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH 372
+ L + A Y RA+ N D E Q+ +
Sbjct: 115 EKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANE-G 173
Query: 373 DHDKALCYFERAVQASP--ADSH 393
D+AL F + P AD+
Sbjct: 174 MLDEALSQFAAVTEQDPGHADAF 196
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 2e-06
Identities = 32/192 (16%), Positives = 65/192 (33%), Gaps = 26/192 (13%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
+A E + + I+E + N+A LL +L RA +Y+ A D ++ +
Sbjct: 41 KAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100
Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAY---ACFLWEMEDDGEDDKAQEEHIQVLP 332
+ A FE+A A ++ + + L ++ + A + +
Sbjct: 101 YVVKEMYK-EAKDMFEKALRAGMENGD---LFYMLGTVLVKL---EQPKLALPYLQRAVE 153
Query: 333 IQSK---------------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKA 377
+ G L+ A F+ +PG + + +KA
Sbjct: 154 LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYK-ENREKA 212
Query: 378 LCYFERAVQASP 389
L ++A+ P
Sbjct: 213 LEMLDKAIDIQP 224
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 4e-07
Identities = 9/94 (9%), Positives = 20/94 (21%), Gaps = 1/94 (1%)
Query: 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274
+A ++ + Q G A Y++ + D + A+
Sbjct: 38 EDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97
Query: 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308
+ A + A
Sbjct: 98 -CLLQXGELAEAESGLFLAQELIANXPEFXELST 130
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-06
Identities = 11/111 (9%), Positives = 27/111 (24%), Gaps = 1/111 (0%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
+ + L + A + G A + + D D ++
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKA 323
+ A+ + A+ + A L + + E +
Sbjct: 62 G-ACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESG 111
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 9e-06
Identities = 15/154 (9%), Positives = 29/154 (18%), Gaps = 24/154 (15%)
Query: 246 GDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILA 305
G L E A ++ A F+ + DS
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQS-GXYEDAHXVFQALCVLDHYDSRFFL 59
Query: 306 AYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAK 365
Q+ G + A +S + + + A+
Sbjct: 60 GLGACR----------------------QAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97
Query: 366 LVWELHHDHDKALCYFERAVQASPADSHVLAAYA 399
+ +A A +
Sbjct: 98 -CLLQXGELAEAESGLFLAQELIANXPEFXELST 130
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 6e-05
Identities = 11/88 (12%), Positives = 22/88 (25%), Gaps = 1/88 (1%)
Query: 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL 395
G E A F + + D + +D A+ + +
Sbjct: 34 SGXYEDAHXVFQALCVLDHYDSRFFLGLG-ACRQAMGQYDLAIHSYSYGAVMDIXEPRFP 92
Query: 396 AAYACFLWETEEDEDDSKSSDQFQQVAP 423
A L + E + Q++
Sbjct: 93 FHAAECLLQXGELAEAESGLFLAQELIA 120
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 4e-07
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
Query: 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274
EAE +++ + + + A + Q K +A D Y A D +
Sbjct: 53 EEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112
Query: 275 LVWELHRDQHRALTYFERAALAAPQDS 301
L +A FE + +
Sbjct: 113 CQLRLKAPL-KAKECFELVIQHSNDEK 138
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 9e-07
Identities = 19/146 (13%), Positives = 38/146 (26%), Gaps = 23/146 (15%)
Query: 211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWM 270
D+ + K + + +YA KG + AE ++ + D + + M
Sbjct: 15 VIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIM 74
Query: 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV 330
A + + Q A + A D + +
Sbjct: 75 GLAAIYQIKEQFQQ-AADLYAVAFALGKNDYTPVFHTGQCQLRL---------------- 117
Query: 331 LPIQSKGDLEGAEEYFSRAILANPGD 356
A+E F I + +
Sbjct: 118 ------KAPLKAKECFELVIQHSNDE 137
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-06
Identities = 20/166 (12%), Positives = 41/166 (24%), Gaps = 24/166 (14%)
Query: 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAA 294
+ + D + + YA + R + A +F
Sbjct: 5 ITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIE-EAEVFFRFLC 63
Query: 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP 354
+ + + + A Q K + A + ++ A
Sbjct: 64 IYDFYNVDYIMGLAAIY----------------------QIKEQFQQAADLYAVAFALGK 101
Query: 355 GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC 400
D + + L KA FE +Q S + + A +
Sbjct: 102 NDYTPVFHTGQCQLRL-KAPLKAKECFELVIQHSNDEKLKIKAQSY 146
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 1e-06
Identities = 22/186 (11%), Positives = 52/186 (27%), Gaps = 22/186 (11%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQ-----KKGDLYRAEDYYNHATMADPGDGESWM 270
+ + + P LL N+ Q L RA + + P +
Sbjct: 178 WPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARA 237
Query: 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV 330
+AL R + + + A + ++ + I+
Sbjct: 238 -------------EKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKA 284
Query: 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAK-LVWELHHDHDKALCYFERAVQASP 389
+ KG + + + + I ++ V+E+ + +A + A P
Sbjct: 285 VSALVKGKTDESYQAINTGIDLEM---SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341
Query: 390 ADSHVL 395
+ +
Sbjct: 342 GANTLY 347
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 8e-04
Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 8/101 (7%)
Query: 208 MPNFDDSAEAEEYYKRM--IDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD 265
+ A + + E ++ + A KG + N +
Sbjct: 251 PLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-- 308
Query: 266 GESWMQYAKL--VWELHRDQHRALTYFERAALAAPQDSNIL 304
SW+ Y L V+E+ A + A P + +
Sbjct: 309 --SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 3e-06
Identities = 20/198 (10%), Positives = 47/198 (23%), Gaps = 19/198 (9%)
Query: 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ 271
+ + ++D + + Y++ L G +A+ G S
Sbjct: 193 PHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLYY 252
Query: 272 YAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331
LV + + + + + +
Sbjct: 253 G--LVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLN---------------- 294
Query: 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391
+ K LE + F G + A + + F + P
Sbjct: 295 YVLKKRGLELFRKLFIELGNEGVGP-HVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS 353
Query: 392 SHVLAAYACFLWETEEDE 409
+ + + FL ++E
Sbjct: 354 TLLKEEFFLFLLRIGDEE 371
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 4e-06
Identities = 25/181 (13%), Positives = 53/181 (29%), Gaps = 33/181 (18%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
A +++ + ++ + G+ Y + + A +
Sbjct: 56 TAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ-KSLTEHRTADI 114
Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335
+ +L + + L E A P +KA+E ++ +
Sbjct: 115 LTKLRNAE-KELKKAEAEAYVNP----------------------EKAEEARLEGKEYFT 151
Query: 336 KGDLEGAEEYFSRAILANPGDGEIMSQ----YAKLVWELHHDHDKALCYFERAVQASPAD 391
K D A + ++ I P D S AKL +A+ +A++ P
Sbjct: 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL-----MSFPEAIADCNKAIEKDPNF 206
Query: 392 S 392
Sbjct: 207 V 207
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 26/186 (13%), Positives = 54/186 (29%), Gaps = 31/186 (16%)
Query: 216 EAEEYYK------RMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA------TMADP 263
+A +++ + L N + A Y+ A + P
Sbjct: 202 DAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261
Query: 264 GDGESWMQYAKLVWELHRDQHRALTYFERA-ALAAPQDSNILAAYACFLWEMEDDGEDDK 322
+++ + + +A Y + A + I + FL + G D++
Sbjct: 262 SLPQAYFLITQ-IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEE 320
Query: 323 AQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFE 382
A + L +SK E++ +A + + KA YF
Sbjct: 321 AIQGFFDFL--ESKMLYADLEDFAI--DVAK-------------YYHERKNFQKASAYFL 363
Query: 383 RAVQAS 388
+ Q
Sbjct: 364 KVEQVR 369
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-05
Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 1/91 (1%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
+ AEA ++ + + P R+ + A NHA M DP D
Sbjct: 32 NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 91
Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNI 303
A H AL L+ PQ +
Sbjct: 92 AVSHTNEHNAN-AALASLRAWLLSQPQYEQL 121
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 6e-05
Identities = 18/118 (15%), Positives = 33/118 (27%), Gaps = 23/118 (19%)
Query: 237 NYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALA 296
+ K +L A + +P E+W E +D A+ A +
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDG-LAIIALNHARML 80
Query: 297 APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP 354
P+D + AA A ++ + A +L+ P
Sbjct: 81 DPKDIAVHAALAVSH----------------------TNEHNANAALASLRAWLLSQP 116
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 4e-05
Identities = 22/174 (12%), Positives = 52/174 (29%), Gaps = 23/174 (13%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
A + + + H + N + ++ AE + + D ++ Q +
Sbjct: 24 GALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRG-M 79
Query: 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335
++ A+ + A + N L Y + + + +
Sbjct: 80 LYYQTEKYDLAIKDLKEALIQ--LRGNQLIDYK----ILGLQFKLFACEVLYNIAFMYAK 133
Query: 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389
K + + AEE + A +++K+ DKA+ + P
Sbjct: 134 KEEWKKAEEQLALATSMKSEP-----RHSKI--------DKAMECVWKQKLYEP 174
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 5e-05
Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 27/167 (16%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESW------ 269
A ++R + E P P L A+ K G + A + P +
Sbjct: 23 AALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82
Query: 270 -MQYAKLVWELHRDQHR---ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE 325
+ + + R + AL+ + A P+ + + + GE DKA+
Sbjct: 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL---GERDKAEA 139
Query: 326 EHIQVLPI--------------QSKGDLEGAEEYFSRAILANPGDGE 358
Q L + S G L+ A +++A+ P D +
Sbjct: 140 SLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD 186
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 6e-05
Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 6/103 (5%)
Query: 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA 286
E P P AQ K + RA + DP ++ KL L R A
Sbjct: 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTD-DA 60
Query: 287 LTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQ 329
+ + + A ++ L E++D + E H
Sbjct: 61 IDTYAQGIEVAREEGT---QKD--LSELQDAKLKAEGLEHHHH 98
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 6e-05
Identities = 26/221 (11%), Positives = 54/221 (24%), Gaps = 14/221 (6%)
Query: 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274
A ++ P + + + Q + R A P + +
Sbjct: 175 ASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDG 234
Query: 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP-- 332
L Q R L +A P +A+ +E + + P
Sbjct: 235 GKQALETMQ-RLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ 293
Query: 333 ----------IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFE 382
Q+ ++ +A P ++ + L + L
Sbjct: 294 VVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL-ETVQRLLPVLC 352
Query: 383 RAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423
+A +P +A+ E + Q + P
Sbjct: 353 QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 393
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 9e-05
Identities = 33/234 (14%), Positives = 62/234 (26%), Gaps = 75/234 (32%)
Query: 215 AEAEEYYKRMIDEY-----PCHPLLLR---NYAQLLQKKGDLYRAEDYY----------- 255
+A + HP + N A L K+G AE
Sbjct: 86 KDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 145
Query: 256 --NHATMADPGDGESWMQYAKLVWELHRDQHR---ALTYFERAALAA------PQDSNIL 304
+H +A Q L L ++Q + Y++RA L P D N+
Sbjct: 146 GKDHPDVAK--------QLNNLA-LLCQNQGKYEEVEYYYQRA-LEIYQTKLGPDDPNVA 195
Query: 305 AAY---ACFLWEMEDDGEDDKAQEEHIQVLPI------------------------QSKG 337
A + G+ +A+ + ++L + KG
Sbjct: 196 KTKNNLASCYLKQ---GKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKG 252
Query: 338 DLEGAEEYFSRAI---LANPGDGEIMSQYAKL--VWELHHDHDKALCYFERAVQ 386
+ + + + L ++ + A E A++
Sbjct: 253 KQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 24/191 (12%), Positives = 50/191 (26%), Gaps = 23/191 (12%)
Query: 213 DSAEAEEYY------KRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA----TMAD 262
+ D L L + L GD ++ A T
Sbjct: 23 SGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL 82
Query: 263 PGDGESWMQYAKLVWELHRDQHRALTYFERA---ALAAPQDSNILAAY---ACFLWEMED 316
+ Q + D ++A+ Y + A + + L M
Sbjct: 83 RTLSAIYSQLG-NAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM-- 139
Query: 317 DGEDDKAQEEHIQVLPIQSK-GDLEG-AEEYFSRAIL-ANPGDGEIMSQYAKLVWELHHD 373
G D+A + L + + GD ++ + G K ++
Sbjct: 140 -GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198
Query: 374 HDKALCYFERA 384
+A+ +++
Sbjct: 199 LTRAVEFYQEN 209
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 33/236 (13%), Positives = 62/236 (26%), Gaps = 73/236 (30%)
Query: 216 EAEEYYK------RMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYY-----------NHA 258
+A +Y+K + +++ N L+ G A +
Sbjct: 104 KAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL 163
Query: 259 TMA-----------DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD------- 300
+ G K ++ RA+ +++ L +D
Sbjct: 164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN-LKLMRDLGDRGAQ 222
Query: 301 ----SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPI---------------------QS 335
N+ Y G+ A E H + L I
Sbjct: 223 GRACGNLGNTY-------YLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF 275
Query: 336 KGDLEGAEEYFSRA--ILANPGD-GEIMSQYAKL--VWELHHDHDKALCYFERAVQ 386
G E A E++ R + G+ L + L H+ + A+ Y R +
Sbjct: 276 LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 2e-04
Identities = 69/472 (14%), Positives = 133/472 (28%), Gaps = 151/472 (31%)
Query: 10 VNIGSLVSPSLSDSPNKDVEEDTNRLNSTTLSCSSPPTSQENCSSSLKGLRRASSDGNLK 69
+N+ + SP E L TS+ + SS++K
Sbjct: 187 LNLKNCNSP----------ETVLEMLQKLLYQIDPNWTSRSDHSSNIK------------ 224
Query: 70 GLAHSHSSCDIEDQIRYLCAQKK-SSCL---HNKANKTMLRSAPSFEIYSSVEGVESEEV 125
I+ ++R L K +CL N N + F + + +
Sbjct: 225 -----LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA---FNLSCKI-------L 269
Query: 126 SLTRTVTIGEDLDGSG---ISSGDFSFGSKKNMGLIEEEGE-----YEEEGLNGIGEEIE 177
TR + + L + IS S M L +E + Y + + E+
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHS------MTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 178 RPVSPPMYLAMGLGISV------------PGFDDAGEVVDLIMPNFDDSAEAEEYYKRM- 224
+P L++ + S+ D +++ + + AE + + R+
Sbjct: 324 T-TNP-RRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE-PAEYRKMFDRLS 379
Query: 225 -------------------IDEYPCHPLL--LRNYAQLLQKKGDLYRAEDYYNHATMADP 263
+ + ++ L Y+ L++K+ + +
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-LVEKQPKESTISIPSIYLELKVK 438
Query: 264 GDGESWMQYAKLVWELHR---DQHRALTYFERAALAAPQDSNILAAYACF-----LWEME 315
+ E LHR D + F+ L P Y L +E
Sbjct: 439 LENEY---------ALHRSIVDHYNIPKTFDSDDLIPPYLDQ----YFYSHIGHHLKNIE 485
Query: 316 DDGEDDKAQEEHIQVLP--------IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLV 367
E + + ++ K + S +IL + Y
Sbjct: 486 --------HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC-- 535
Query: 368 WELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQ 419
D+D P ++ A FL + EE+ SK +D +
Sbjct: 536 -----DND-------------PKYERLVNAILDFLPKIEENLICSKYTDLLR 569
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 3e-04
Identities = 18/173 (10%), Positives = 56/173 (32%), Gaps = 11/173 (6%)
Query: 206 LIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD 265
+++ D ++ E+ ++++ + ++ ++Q+ Y + D +
Sbjct: 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 233
Query: 266 GESWMQYAKLVWELHRDQ-----HRALTYFERAALAAPQDSNILAAYACFLWEMEDDG-- 318
W Q ++ R + Y P + +A+ ++D G
Sbjct: 234 NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNE---SAWNYLKGILQDRGLS 290
Query: 319 EDDKAQEEHIQVLP-IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL 370
+ + + + P S + + + + + E + A + E+
Sbjct: 291 KYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEI 343
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 3e-04
Identities = 34/235 (14%), Positives = 59/235 (25%), Gaps = 77/235 (32%)
Query: 215 AEAEEYYKRMIDEY-----PCHPLLLR---NYAQLLQKKGDLYRAEDYY----------- 255
EA + HP + N A L K+G AE
Sbjct: 60 KEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119
Query: 256 --NHATMADPGDGESWMQYAKLVWELHRDQHR---ALTYFERAALAA------PQDSNIL 304
H +A Q L L ++Q + Y+ RA L P D N+
Sbjct: 120 GKFHPDVA--------KQLNNLA-LLCQNQGKAEEVEYYYRRA-LEIYATRLGPDDPNVA 169
Query: 305 AAY---ACFLWEMEDDGEDDKAQEEHIQVLPI------------------------QSKG 337
A + G+ A+ + ++L +SK
Sbjct: 170 KTKNNLASCYLKQ---GKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKD 226
Query: 338 DLEGAEEYFSRAI------LANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQ 386
+ Y + +P + ++ + A + A +
Sbjct: 227 KRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLG-ALYRRQGKLEAAHTLEDCASR 280
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 25/239 (10%), Positives = 56/239 (23%), Gaps = 79/239 (33%)
Query: 213 DSAEAEEYYKRMIDEY-----PCHP---LLLRNYAQLLQKKGDLYRAEDYY--------- 255
A K+ +++ HP +L A + + + A
Sbjct: 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREK 75
Query: 256 ----NH----ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA------PQDS 301
+H AT+ + +++ A +R AL
Sbjct: 76 TLGKDHPAVAATLNNLA----------VLYGKRGKYKEAEPLCKR-ALEIREKVLGKFHP 124
Query: 302 NILAAY---ACFLWEMEDDGEDDKAQEEHIQVLPI-----------------------QS 335
++ A G+ ++ + + + L I
Sbjct: 125 DVAKQLNNLALLCQNQ---GKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK 181
Query: 336 KGDLEGAEEYFSRAILAN------PGDGEIMSQYAKL--VWELHHDHDKALCYFERAVQ 386
+G + AE + + +G+ + E + Y E
Sbjct: 182 QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSW 240
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 33/238 (13%), Positives = 55/238 (23%), Gaps = 62/238 (26%)
Query: 210 NFDDSAEAEEYYKRM------IDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA----- 258
D A+A EY+ I + N L+ G+ A
Sbjct: 59 YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR 118
Query: 259 --------------------TMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAP 298
+ E+ A+ ++E L+
Sbjct: 119 ELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN-LSLV 177
Query: 299 QDSNILAAYACFLWEM----EDDGEDDKAQEEHIQVLPI--------------------- 333
AA + G A H Q L I
Sbjct: 178 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 237
Query: 334 QSKGDLEGAEEYFSRAI---LANPGDGEIMSQYAKL--VWELHHDHDKALCYFERAVQ 386
G+ E A EY+ + + L + L D++KA+ Y + +
Sbjct: 238 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 20/183 (10%), Positives = 49/183 (26%), Gaps = 28/183 (15%)
Query: 216 EAEEYYKR---MIDEYPCHPLL---LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESW 269
+A + + + + + L N A + GD A +++ A
Sbjct: 200 KALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259
Query: 270 MQYAK----LVWELHRDQHRALTYFERA-ALAAPQDSNILAAYACFLWEMEDDGEDDKAQ 324
+ +A + E + FL + + D++
Sbjct: 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKI 319
Query: 325 EEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384
+ + + K E A V+E ++A ++ +
Sbjct: 320 HDLLSYF--EKKNLHAYIEACAR--SAAA-------------VFESSCHFEQAAAFYRKV 362
Query: 385 VQA 387
++A
Sbjct: 363 LKA 365
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 34/239 (14%), Positives = 55/239 (23%), Gaps = 74/239 (30%)
Query: 213 DSAEAEEYYK------RMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA-------- 258
D A+A EY+ R I + N L+ G+ A
Sbjct: 58 DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 117
Query: 259 -----------------TMADPGDGESWMQYAKLVWELHRDQHRALTYFERA-----ALA 296
+ ++ A+ +E AL
Sbjct: 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG 177
Query: 297 APQD-----SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPI------------------ 333
N+ + G A H Q L I
Sbjct: 178 DRAAQGRAFGNLGNTH-------YLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG 230
Query: 334 ---QSKGDLEGAEEYFSRA--ILANPGD-GEIMSQYAKL--VWELHHDHDKALCYFERA 384
G+ E A EY+ + + D L + L D++KA+ Y +
Sbjct: 231 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 4e-04
Identities = 17/130 (13%), Positives = 40/130 (30%), Gaps = 4/130 (3%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
+ A+A + + DE + A L + A++ + + +
Sbjct: 21 EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIA 80
Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
+ + + L E+ A P + + A ++ G D++A E +L
Sbjct: 81 KLELHQQAAE-SPELKRLEQELAANPDNFELACELAVQYNQV---GRDEEALELLWNILK 136
Query: 333 IQSKGDLEGA 342
+
Sbjct: 137 VNLGAQDGEV 146
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 436 | |||
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.96 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.95 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.95 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.95 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.95 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.95 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.94 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.94 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.94 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.94 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.94 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.94 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.93 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.93 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.93 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.93 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.93 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.93 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.93 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.92 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.92 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.91 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.9 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.9 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.9 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.9 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.9 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.9 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.89 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.89 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.89 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.89 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.88 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.88 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.88 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.87 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.87 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.87 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.87 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.87 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.87 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.86 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.86 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.86 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.85 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.85 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.85 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.85 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.85 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.85 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.85 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.85 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.84 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.83 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.82 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.82 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.81 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.81 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.81 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.8 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.8 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.79 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.79 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.79 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.79 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.78 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.78 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.77 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.77 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.76 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.76 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.75 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.74 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.74 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.74 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.74 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.74 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.73 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.73 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.72 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.71 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.71 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.71 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.71 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.71 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.71 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.7 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.7 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.69 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.69 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.68 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.68 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.67 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.66 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.66 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.65 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.65 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.65 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.65 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.64 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.64 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.63 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.63 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.63 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.63 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.62 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.62 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.62 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.61 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.61 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.61 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.61 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.6 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.6 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.6 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.59 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.59 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.59 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.59 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.58 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.58 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.58 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.58 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.57 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.57 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.56 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.56 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.56 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.56 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.55 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.55 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.54 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.54 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.53 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.53 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.52 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.52 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.52 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.51 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.51 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.51 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.51 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.51 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.5 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.5 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.5 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.49 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.49 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.49 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.47 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.46 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.46 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.46 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.45 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.44 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.44 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.43 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.43 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.42 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.41 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.41 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.4 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.4 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.39 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.36 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.36 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.34 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.33 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.32 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.22 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.21 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.19 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.17 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.16 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.15 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.14 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.14 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 99.08 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.04 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.02 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.01 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.01 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.99 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.97 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.95 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.93 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.92 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.91 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.87 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.79 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.68 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.62 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.62 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.58 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.54 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.48 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.45 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.45 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.43 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.32 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.3 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.2 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.18 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 98.06 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 98.05 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.95 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.86 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.65 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.19 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.07 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.07 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.03 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.88 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.52 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.48 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.41 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.06 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 96.05 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.04 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 95.91 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.71 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 95.7 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.55 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.33 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.19 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.74 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 94.35 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 94.26 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 93.73 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 93.62 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 92.98 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.34 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 91.89 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.46 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 91.22 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 90.79 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.66 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.52 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 89.51 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 89.39 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 86.28 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 86.14 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.26 | |
| 3ubw_A | 261 | 14-3-3E, 14-3-3 protein epsilon; adapter protein, | 84.05 | |
| 1o9d_A | 260 | 14-3-3-like protein C; protein-binding, fusicoccin | 83.03 |
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-28 Score=237.02 Aligned_cols=254 Identities=15% Similarity=0.218 Sum_probs=218.1
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+++++...+..++.+.+ +....+..+|.++...|++++|+.+|+++++.+|++..+|..+|.++...|++++|+..|++
T Consensus 116 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (388)
T 1w3b_A 116 DMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp CSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45566666777777777 67778888888888888888888888888888888888888888888888889999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
+++++|++..++..+|.++...+. +++|+..|++++.++|++..++..+|.++...|++++|...+++++..
T Consensus 195 al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 273 (388)
T 1w3b_A 195 AVTLDPNFLDAYINLGNVLKEARI-FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTC-TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Confidence 888888888888888888887764 888999999999888988888888898888999998888888877765
Q ss_pred -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013800 331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET 405 (436)
Q Consensus 331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 405 (436)
.++...|++++|+..|+++++.+|.++.++..+|.++...|+ +++|+..|++++++.|++..++..+|.++...
T Consensus 274 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 274 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN-IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 677788999999999999999999999999999999998888 99999999999999999888999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCChhHHh-hhhh
Q 013800 406 EEDEDDSKSSDQFQQVAPIRQGAVT-TANV 434 (436)
Q Consensus 406 g~~~~A~~~~~~al~l~p~~~~a~~-~an~ 434 (436)
|++++|+..|++++++.|++..+.. .+.+
T Consensus 353 g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~ 382 (388)
T 1w3b_A 353 GKLQEALMHYKEAIRISPTFADAYSNMGNT 382 (388)
T ss_dssp TCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHhHHHH
Confidence 9999999999999999888877655 4443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=236.10 Aligned_cols=250 Identities=17% Similarity=0.108 Sum_probs=227.2
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+++++..++.+++.+.+ ....+|.++|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++
T Consensus 82 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44467777888888888 77888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
+++.+|++..+|..+|.++...++ +++|+..|+++++++|++..++..+|.++...|++++|...+.+.+..
T Consensus 161 al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 239 (388)
T 1w3b_A 161 AIETQPNFAVAWSNLGCVFNAQGE-IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHH
Confidence 999999999999999999888874 999999999999999999999999999999999999999999887765
Q ss_pred -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013800 331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET 405 (436)
Q Consensus 331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 405 (436)
.++...|++++|+..|+++++++|+++.++..+|.++...|+ +++|+..|++++++.|.+..++..++.++...
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS-VAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 778889999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCChhHHh
Q 013800 406 EEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 406 g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
|++++|+..|++++++.|+...+..
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~ 343 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHS 343 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 9999999999999999998766544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=218.09 Aligned_cols=199 Identities=19% Similarity=0.194 Sum_probs=178.7
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
.++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-----------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHH
Q 013800 276 VWEL-----------HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEE 344 (436)
Q Consensus 276 ~~~~-----------~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~ 344 (436)
+... ++ +++|+..|+++++++|++..++..+| .++...|++++|+.
T Consensus 83 ~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~P~~~~~~~~lg----------------------~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGY-LEQALSVLKDAERVNPRYAPLHLQRG----------------------LVYALLGERDKAEA 139 (217)
T ss_dssp HHHHHHTCSSHHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHH
T ss_pred HHHhhhhhhhhcccccC-HHHHHHHHHHHHHhCcccHHHHHHHH----------------------HHHHHcCChHHHHH
Confidence 9999 85 99999999999999999999999999 88999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013800 345 YFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 345 ~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 419 (436)
.|+++++++ +++.+++++|.++..+|+ +++|+..|+++++++|+++.++..+|.++..+|++++|+..|+++.
T Consensus 140 ~~~~al~~~-~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 140 SLKQALALE-DTPEIRSALAELYLSMGR-LDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHC-CCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHhcc-cchHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999 999999999999999999 9999999999999999999999999999999999999999998865
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=220.77 Aligned_cols=250 Identities=13% Similarity=0.073 Sum_probs=234.0
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG-DLYRAEDYYN 256 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g-~~~~A~~~~~ 256 (436)
+...+..++..++..++ .....+..++.++...|++++|+.+++++++.+|+++.++..+|.++...| ++++|+.+|+
T Consensus 37 ~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 115 (330)
T 3hym_B 37 DFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLS 115 (330)
T ss_dssp CHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 44467778888888888 677888889999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------
Q 013800 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------ 330 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------ 330 (436)
++++.+|.++.+|..+|.++...++ +++|+.+|+++++..|++..++..+|.++...|++++|...+++++..
T Consensus 116 ~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 194 (330)
T 3hym_B 116 KATTLEKTYGPAWIAYGHSFAVESE-HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF 194 (330)
T ss_dssp HHHTTCTTCTHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHhCCccHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChH
Confidence 9999999999999999999999975 999999999999999999999999999999999999999999987765
Q ss_pred ------hHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 331 ------LPIQSKGDLEGAEEYFSRAILAN---------PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL 395 (436)
Q Consensus 331 ------~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~ 395 (436)
.++...|++++|+.+|+++++.. |..+.++..+|.++...|+ +++|+..|+++++++|++..++
T Consensus 195 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~ 273 (330)
T 3hym_B 195 VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK-YAEALDYHRQALVLIPQNASTY 273 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCSHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhhCccchHHH
Confidence 88889999999999999999986 6778999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 396 AAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 396 ~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
..+|.++..+|++++|+++|++++++.|+...+..
T Consensus 274 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 308 (330)
T 3hym_B 274 SAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVT 308 (330)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHH
Confidence 99999999999999999999999999999877555
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=225.74 Aligned_cols=227 Identities=10% Similarity=-0.014 Sum_probs=205.2
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
..|..+|..+...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..|+++++++|.++.++..+|.++..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHH----------HHHHHHccCchHHHHHHHHHHHH--------------hHHH
Q 013800 279 LHRDQHRALTYFERAALAAPQDSNILAAY----------ACFLWEMEDDGEDDKAQEEHIQV--------------LPIQ 334 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~~~~~--------------~~~~ 334 (436)
.++ +++|+.+|++++++.|++..++..+ +.++...|++++|...+++++.. .++.
T Consensus 146 ~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 146 TSH-QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp TTC-HHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccc-HHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 875 9999999999999999876666554 89999999999999999988765 7888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Q 013800 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKS 414 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 414 (436)
..|++++|+.+|+++++++|+++.+|..+|.++...|+ +++|+..|+++++++|++..++..+|.++..+|++++|+.+
T Consensus 225 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDR-SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCChh
Q 013800 415 SDQFQQVAPIRQG 427 (436)
Q Consensus 415 ~~~al~l~p~~~~ 427 (436)
|++++++.|...+
T Consensus 304 ~~~al~~~~~~~~ 316 (365)
T 4eqf_A 304 FLTALSLQRKSRN 316 (365)
T ss_dssp HHHHHHHHHCC--
T ss_pred HHHHHHhCcccCC
Confidence 9999999887544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=228.83 Aligned_cols=222 Identities=12% Similarity=0.103 Sum_probs=203.0
Q ss_pred hcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHH
Q 013800 189 GLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGD-LYRAEDYYNHATMADPGDGE 267 (436)
Q Consensus 189 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~ 267 (436)
++.+.+ .+..+|..+|.++...|++++|+..|+++++++|++..+|.++|.++..+|+ +++|+.+|+++++++|++..
T Consensus 89 ai~~~p-~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~ 167 (382)
T 2h6f_A 89 QIIYSD-KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ 167 (382)
T ss_dssp EECCCH-HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhhCCh-hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH
Confidence 456666 6778999999999999999999999999999999999999999999999997 99999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHH
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFS 347 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~ 347 (436)
+|+++|.++..+++ +++|+.+|+++++++|++..+|+++| .++..+|++++|+.+|+
T Consensus 168 a~~~~g~~~~~~g~-~~eAl~~~~kal~ldP~~~~a~~~lg----------------------~~~~~~g~~~eAl~~~~ 224 (382)
T 2h6f_A 168 VWHHRRVLVEWLRD-PSQELEFIADILNQDAKNYHAWQHRQ----------------------WVIQEFKLWDNELQYVD 224 (382)
T ss_dssp HHHHHHHHHHHHTC-CTTHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHHTCCTTHHHHHH
T ss_pred HHHHHHHHHHHccC-HHHHHHHHHHHHHhCccCHHHHHHHH----------------------HHHHHcCChHHHHHHHH
Confidence 99999999999985 99999999999999999999999999 88888999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHCC--ChHHHHHHHHHHHh
Q 013800 348 RAILANPGDGEIMSQYAKLVWELHHDHDKA-----LCYFERAVQASPADSHVLAAYACFLWETE--EDEDDSKSSDQFQQ 420 (436)
Q Consensus 348 ~al~~~p~~~~~~~~la~~~~~~g~d~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~ 420 (436)
++|+++|++..+|+++|.++..+++.+++| +.+|++++.++|++..+|..++.++...| ++++|++.++++ +
T Consensus 225 ~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~ 303 (382)
T 2h6f_A 225 QLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q 303 (382)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c
Confidence 999999999999999999999955514788 59999999999999999999999999988 689999999888 8
Q ss_pred hCCCChhHHh-hhhhc
Q 013800 421 VAPIRQGAVT-TANVY 435 (436)
Q Consensus 421 l~p~~~~a~~-~an~y 435 (436)
..|+...+.. ++.+|
T Consensus 304 ~~p~~~~al~~La~~~ 319 (382)
T 2h6f_A 304 PSHSSPYLIAFLVDIY 319 (382)
T ss_dssp TTCCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH
Confidence 8888766544 44444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-25 Score=216.31 Aligned_cols=250 Identities=12% Similarity=0.086 Sum_probs=230.1
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP---CHPLLLRNY------------AQLL 242 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P---~~~~~~~~l------------a~~~ 242 (436)
++..+..++..++.+.+ ....+|..+|.++...|++++|+..|+++++.+| ++..++..+ |.++
T Consensus 52 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 130 (359)
T 3ieg_A 52 KSKAALPDLTKVIALKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDA 130 (359)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577788888888888 7888999999999999999999999999999999 888888777 7899
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH
Q 013800 243 QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK 322 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 322 (436)
...|++++|+..++++++..|.++.++..+|.++...++ +++|+..|+++++..|.++.++..+|.++...|++++|..
T Consensus 131 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 209 (359)
T 3ieg_A 131 FDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGE-PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLS 209 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999875 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHH------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhcCCH
Q 013800 323 AQEEHIQV------------------------LPIQSKGDLEGAEEYFSRAILANPGDGE----IMSQYAKLVWELHHDH 374 (436)
Q Consensus 323 ~~~~~~~~------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~d~ 374 (436)
.++++++. .++...|++++|+..|+++++..|+++. ++..+|.++...|+ +
T Consensus 210 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~ 288 (359)
T 3ieg_A 210 EVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK-P 288 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC-H
T ss_pred HHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC-H
Confidence 99977765 3478899999999999999999999874 46679999999999 9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 375 DKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 375 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+...+..
T Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 344 (359)
T 3ieg_A 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIRE 344 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999887654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=218.48 Aligned_cols=245 Identities=10% Similarity=0.025 Sum_probs=221.3
Q ss_pred CCCChHH-HHHhhcCCCCCC---ChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 013800 178 RPVSPPM-YLAMGLGISVPG---FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAED 253 (436)
Q Consensus 178 ~p~~a~~-~~~~~~~~~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~ 253 (436)
+...+.. ++..++.+.+.. ....+..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.
T Consensus 40 ~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 119 (368)
T 1fch_A 40 DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAIS 119 (368)
T ss_dssp ------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 3445666 788888777732 246789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHHHHccCc
Q 013800 254 YYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILA----------------AYACFLWEMEDD 317 (436)
Q Consensus 254 ~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~----------------~la~~~~~~g~~ 317 (436)
.|+++++++|.++.++..+|.++...++ +++|+..|++++.+.|.+...+. .++.++ ..|++
T Consensus 120 ~~~~al~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 197 (368)
T 1fch_A 120 ALRRCLELKPDNQTALMALAVSFTNESL-QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLF 197 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccH
Confidence 9999999999999999999999999875 99999999999999999877665 456665 88999
Q ss_pred hHHHHHHHHHHHH--------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013800 318 GEDDKAQEEHIQV--------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 318 ~~A~~~~~~~~~~--------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~ 383 (436)
++|...+++++.. .++...|++++|+.+|++++.++|+++.++..+|.++...|+ +++|+..|++
T Consensus 198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~ 276 (368)
T 1fch_A 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ-SEEAVAAYRR 276 (368)
T ss_dssp HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCC-HHHHHHHHHH
Confidence 9999999887654 788899999999999999999999999999999999999999 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 384 AVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 384 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
+++++|++..++..+|.++..+|++++|+..|++++.+.|..
T Consensus 277 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 277 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999998877
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-25 Score=211.00 Aligned_cols=238 Identities=13% Similarity=0.056 Sum_probs=222.7
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
.+...+..++..++..|++++|+.+|+++++.+|.+..++..++.++...|++++|+..++++++.+|.++.++..+|.+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 34557888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHH
Q 013800 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAE 343 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~ 343 (436)
+...++++++|+.+|+++++++|.+..++..+|.++...|++++|...+++++.. .++...|++++|+
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence 9999845999999999999999999999999999999999999999999988876 7888999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHCCChHHHHHH
Q 013800 344 EYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS---------PADSHVLAAYACFLWETEEDEDDSKS 414 (436)
Q Consensus 344 ~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~ 414 (436)
.+|+++++.+|.++.++..+|.++...|+ +++|+..|++++... |....++..+|.++...|++++|+.+
T Consensus 180 ~~~~~al~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIAPEDPFVMHEVGVVAFQNGE-WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHccc-HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999999 999999999999986 66778999999999999999999999
Q ss_pred HHHHHhhCCCChhHHh-hhhh
Q 013800 415 SDQFQQVAPIRQGAVT-TANV 434 (436)
Q Consensus 415 ~~~al~l~p~~~~a~~-~an~ 434 (436)
|++++++.|....+.. .+.+
T Consensus 259 ~~~a~~~~~~~~~~~~~la~~ 279 (330)
T 3hym_B 259 HRQALVLIPQNASTYSAIGYI 279 (330)
T ss_dssp HHHHHHHSTTCSHHHHHHHHH
T ss_pred HHHHHhhCccchHHHHHHHHH
Confidence 9999999998766544 4443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-25 Score=228.13 Aligned_cols=253 Identities=13% Similarity=0.067 Sum_probs=213.2
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
++..++...+...+ .+..+|..++.++...|++++|+..++++++..|++..++..+|.+|...|++++|+++|+++++
T Consensus 323 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 323 DVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444444444 34455556666666666666666666666666777788888999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------
Q 013800 261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV---------- 330 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------- 330 (436)
.+|.+..+|..++.++...++ +++|+.+|+++++..|++..++..++.++...|++++|...+++++..
T Consensus 402 ~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 480 (597)
T 2xpi_A 402 MDPQFGPAWIGFAHSFAIEGE-HDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNE 480 (597)
T ss_dssp HCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 999999999999999888875 999999999999999999999999999999999999999999887765
Q ss_pred --hHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 331 --LPIQSKGDLEGAEEYFSRAILA------NPGD-GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 331 --~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
.++...|++++|+.+|+++++. +|++ ..+|..+|.++...|+ +++|+..|+++++++|++..++..++.+
T Consensus 481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 559 (597)
T 2xpi_A 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM-YDAAIDALNQGLLLSTNDANVHTAIALV 559 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 7888999999999999999998 6664 7899999999999999 9999999999999999999999999999
Q ss_pred HHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhhcC
Q 013800 402 LWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANVYA 436 (436)
Q Consensus 402 ~~~~g~~~~A~~~~~~al~l~p~~~~a~~-~an~ya 436 (436)
+...|++++|+++|++++++.|+...+.. .+++|+
T Consensus 560 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 560 YLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 99999999999999999999999988776 777764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-25 Score=211.17 Aligned_cols=254 Identities=13% Similarity=0.066 Sum_probs=229.1
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
++..+..++..++...+ ..+.+|..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++
T Consensus 18 ~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 96 (359)
T 3ieg_A 18 QLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKK 96 (359)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHH
Confidence 44577888888888888 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCC---CCHHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH
Q 013800 258 ATMADP---GDGESWMQY------------AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK 322 (436)
Q Consensus 258 al~~~p---~~~~~~~~l------------a~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 322 (436)
+++.+| .+..++..+ |.++...+ ++++|+.+|+++++..|.++.++..+|.++...|++++|..
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 175 (359)
T 3ieg_A 97 VLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA-DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 175 (359)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 999999 888888877 67777776 49999999999999999999999999999999999999999
Q ss_pred HHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH------------HHHHHHHhcCCHHHHH
Q 013800 323 AQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ------------YAKLVWELHHDHDKAL 378 (436)
Q Consensus 323 ~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------------la~~~~~~g~d~~~A~ 378 (436)
.+.+++.. .++...|++++|+..|+++++..|++..++.. +|.++...|+ +++|+
T Consensus 176 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~ 254 (359)
T 3ieg_A 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR-YTDAT 254 (359)
T ss_dssp HHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHH
Confidence 99987765 78889999999999999999999999887654 4888999999 99999
Q ss_pred HHHHHHHHhCCCCHH----HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhh
Q 013800 379 CYFERAVQASPADSH----VLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANV 434 (436)
Q Consensus 379 ~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~-~an~ 434 (436)
..|+++++..|++.. ++..+|.++...|++++|+..|++++++.|....... .+.+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 255 SKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 999999999999874 4667899999999999999999999999998766544 4443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-24 Score=216.41 Aligned_cols=246 Identities=12% Similarity=0.072 Sum_probs=138.5
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
.+..++..++...+ .+..+|..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++
T Consensus 44 ~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 122 (450)
T 2y4t_A 44 DALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 122 (450)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444444444 34455555555555555555555555555555555555555555555555555555555555555
Q ss_pred hCCCC-------------------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 261 ADPGD-------------------------------------------------GESWMQYAKLVWELHRDQHRALTYFE 291 (436)
Q Consensus 261 ~~p~~-------------------------------------------------~~~~~~la~~~~~~~~d~~~A~~~~~ 291 (436)
.+|.+ ..++..+|.++...++ +++|+.+|+
T Consensus 123 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~ 201 (450)
T 2y4t_A 123 SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGE-PRKAISDLK 201 (450)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-GGGGHHHHH
T ss_pred cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCC-HHHHHHHHH
Confidence 55554 4444444444444432 444444444
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------------------hHHHHcCCHHHHHHHHH
Q 013800 292 RAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------------------LPIQSKGDLEGAEEYFS 347 (436)
Q Consensus 292 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------------~~~~~~g~~~~A~~~~~ 347 (436)
++++.+|+++.++..+|.++...|++++|...+++++.. .++...|++++|+.+|+
T Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 281 (450)
T 2y4t_A 202 AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 281 (450)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444444444444444444444444444444433322 23445566666666666
Q ss_pred HHHHhCCCCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013800 348 RAILANPGDG----EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 348 ~al~~~p~~~----~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 423 (436)
+++++.|.++ .++..+|.++...|+ +++|+..++++++++|++..++..+|.++...|++++|+..|++++++.|
T Consensus 282 ~~l~~~p~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 282 SVMKTEPSIAEYTVRSKERICHCFSKDEK-PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHHHHCCSSHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 6666666653 356666666666666 77777777777777777677777777777777777777777777777766
Q ss_pred CChhHH
Q 013800 424 IRQGAV 429 (436)
Q Consensus 424 ~~~~a~ 429 (436)
+.....
T Consensus 361 ~~~~~~ 366 (450)
T 2y4t_A 361 NDQQIR 366 (450)
T ss_dssp SCHHHH
T ss_pred chHHHH
Confidence 665543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-26 Score=223.34 Aligned_cols=226 Identities=12% Similarity=0.112 Sum_probs=209.2
Q ss_pred cCCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 013800 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDD-SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYY 255 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 255 (436)
.++..+..++.+++.+.+ .+..+|.++|.++...|+ +++|+.+|+++++++|++..+|+++|.++..+|++++|+..|
T Consensus 111 g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~ 189 (382)
T 2h6f_A 111 ERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFI 189 (382)
T ss_dssp CCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred CChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 356788999999999999 899999999999999997 999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH
Q 013800 256 NHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335 (436)
Q Consensus 256 ~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 335 (436)
+++++++|++..+|+++|.++..+++ +++|+.+|+++++++|++..+|+++| .++..
T Consensus 190 ~kal~ldP~~~~a~~~lg~~~~~~g~-~~eAl~~~~~al~l~P~~~~a~~~lg----------------------~~l~~ 246 (382)
T 2h6f_A 190 ADILNQDAKNYHAWQHRQWVIQEFKL-WDNELQYVDQLLKEDVRNNSVWNQRY----------------------FVISN 246 (382)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHH
T ss_pred HHHHHhCccCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHH
Confidence 99999999999999999999999985 99999999999999999999999999 66666
Q ss_pred -cCCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-
Q 013800 336 -KGDLEGA-----EEYFSRAILANPGDGEIMSQYAKLVWELH--HDHDKALCYFERAVQASPADSHVLAAYACFLWETE- 406 (436)
Q Consensus 336 -~g~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g- 406 (436)
.|.+++| +.+|+++++++|++..+|++++.++...| + +++|++.++++ +.+|++..++..+|.++..+|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~-~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSK-YPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGG-CHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccc-hHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhc
Confidence 4444666 69999999999999999999999999988 5 89999999998 999999999999999999985
Q ss_pred -------C-hHHHHHHHHHH-HhhCCCChhH
Q 013800 407 -------E-DEDDSKSSDQF-QQVAPIRQGA 428 (436)
Q Consensus 407 -------~-~~~A~~~~~~a-l~l~p~~~~a 428 (436)
+ .++|+++|+++ ++++|.....
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~ 355 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKEKDTIRKEY 355 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhCchhHHH
Confidence 2 58999999999 9999986653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.2e-25 Score=218.54 Aligned_cols=227 Identities=13% Similarity=0.073 Sum_probs=206.7
Q ss_pred CCCChHHHHHhhcCCCCCCCh---hhhhhH------------hhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFD---DAGEVV------------DLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLL 242 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~---~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~ 242 (436)
+++++..++..++.+.+ ... ..|..+ |.++...|++++|+.+|+++++..|.+..++..+|.+|
T Consensus 109 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (450)
T 2y4t_A 109 KLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECF 187 (450)
T ss_dssp CHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 55566777788888877 555 555544 66699999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHH
Q 013800 243 QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY------------ACF 310 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l------------a~~ 310 (436)
...|++++|+..|+++++.+|.++.+|..+|.++...++ +++|+.+|++++.++|++...+..+ +.+
T Consensus 188 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 266 (450)
T 2y4t_A 188 IKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD-HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE 266 (450)
T ss_dssp HHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999875 9999999999999999999988776 999
Q ss_pred HHHccCchHHHHHHHHHHHH----------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCH
Q 013800 311 LWEMEDDGEDDKAQEEHIQV----------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDH 374 (436)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~----------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~ 374 (436)
+...|++++|...+.+++.. .++...|++++|+..++++++++|+++.+|..+|.++...|+ +
T Consensus 267 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~-~ 345 (450)
T 2y4t_A 267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM-Y 345 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-H
T ss_pred HHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC-H
Confidence 99999999999999987665 678889999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 013800 375 DKALCYFERAVQASPADSHVLAAYACFLWETEE 407 (436)
Q Consensus 375 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 407 (436)
++|+..|+++++++|++..++..++.+....++
T Consensus 346 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 346 DEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999988766543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-25 Score=214.37 Aligned_cols=240 Identities=11% Similarity=0.036 Sum_probs=224.4
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
++..+..++..++...+ ....+|..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|++
T Consensus 79 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 157 (368)
T 1fch_A 79 DLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRD 157 (368)
T ss_dssp CHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45578888999999998 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHH----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchH
Q 013800 258 ATMADPGDGESWM----------------QYAKLVWELHRDQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGE 319 (436)
Q Consensus 258 al~~~p~~~~~~~----------------~la~~~~~~~~d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~ 319 (436)
++...|.+...+. .++.++ ..+ ++++|+.+|+++++.+|. +..++..+|.++...|++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 235 (368)
T 1fch_A 158 WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDS-LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK 235 (368)
T ss_dssp HHHTSTTTGGGCC---------------CTTHHHH-HHH-HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcc-cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999877665 466555 666 499999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 320 DDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 320 A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
|+..+++++.. .++...|++++|+..|+++++++|+++.++..+|.++...|+ +++|+..|++++.+
T Consensus 236 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~ 314 (368)
T 1fch_A 236 AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA-HREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh
Confidence 99999988876 788899999999999999999999999999999999999999 99999999999999
Q ss_pred CCCC-----------HHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 388 SPAD-----------SHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 388 ~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
.|++ ..+|..++.++..+|++++|..+++++++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 315 QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 9988 899999999999999999999999887765
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-24 Score=198.24 Aligned_cols=208 Identities=19% Similarity=0.190 Sum_probs=184.7
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
..|..+|..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV 103 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 46777788888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
.++ +++|+.+|+++++..|.+..++..+| .++...|++++|+.+++++++..|.++.
T Consensus 104 ~~~-~~~A~~~~~~~~~~~~~~~~~~~~~a----------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 160 (243)
T 2q7f_A 104 KEM-YKEAKDMFEKALRAGMENGDLFYMLG----------------------TVLVKLEQPKLALPYLQRAVELNENDTE 160 (243)
T ss_dssp TTC-HHHHHHHHHHHHHHTCCSHHHHHHHH----------------------HHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred hcc-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHhccHHHHHHHHHHHHHhCCccHH
Confidence 875 99999999999999999999999999 8889999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 359 IMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
++..+|.++...|+ +++|+..|+++++..|.+..++..+|.++...|++++|+..+++++++.|+...+..
T Consensus 161 ~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 231 (243)
T 2q7f_A 161 ARFQFGMCLANEGM-LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALH 231 (243)
T ss_dssp HHHHHHHHHHHHTC-CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHH
Confidence 99999999999999 999999999999999999999999999999999999999999999999999887655
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-24 Score=198.09 Aligned_cols=221 Identities=16% Similarity=0.120 Sum_probs=198.5
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD-------GESWM 270 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 270 (436)
+..|..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..+++++++.|.+ +.++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 4578889999999999999999999999999 889999999999999999999999999999998876 78999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCC
Q 013800 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGD 338 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~ 338 (436)
.+|.++...++ +++|+.+|++++++.|. +.++...|++++|...+.+.+.. .++...|+
T Consensus 84 ~l~~~~~~~~~-~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 84 RIGNAYHKLGD-LKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccc-HHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 99999998875 99999999999998877 34455556667777777655543 78889999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013800 339 LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 418 (436)
+++|+.+|+++++.+|.++.++..+|.++...|+ +++|+..|+++++.+|++..++..+|.++..+|++++|+..|+++
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS-FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HhhC------CCChhHH
Q 013800 419 QQVA------PIRQGAV 429 (436)
Q Consensus 419 l~l~------p~~~~a~ 429 (436)
+++. |......
T Consensus 234 ~~~~~~~~~~p~~~~~~ 250 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREID 250 (258)
T ss_dssp HHHHHHHHTTTTHHHHH
T ss_pred HHhChhhcCCCchHHHH
Confidence 9998 6655443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=207.11 Aligned_cols=224 Identities=17% Similarity=0.109 Sum_probs=188.1
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
..+..+|..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 34667777777778888888888888888888888888888888888888888888888888888888888888877777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHccCchHHHHHHHHHHHH------------h
Q 013800 279 LHRDQHRALTYFERAALAAPQDSNILAAY--------------AC-FLWEMEDDGEDDKAQEEHIQV------------L 331 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~~~~~------------~ 331 (436)
.++ +++|+.+|+++++..|.+...+..+ +. ++...|++++|...+.+.+.. .
T Consensus 102 ~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHN-ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180 (327)
T ss_dssp TTC-HHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred cCC-HHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 764 8888888888888887777666665 54 566677777777777766654 7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Q 013800 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDD 411 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 411 (436)
++...|++++|+.+++++++.+|+++.++..+|.++...|+ +++|+..|+++++..|++..++..+|.++..+|++++|
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNR-PQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence 88899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCC
Q 013800 412 SKSSDQFQQVAPI 424 (436)
Q Consensus 412 ~~~~~~al~l~p~ 424 (436)
++.|++++.+.|.
T Consensus 260 ~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 260 AKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCc
Confidence 9999999999988
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-25 Score=217.69 Aligned_cols=241 Identities=13% Similarity=0.040 Sum_probs=216.8
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
++..+..++..++.+.+ ....+|..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|++
T Consensus 80 ~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 158 (365)
T 4eqf_A 80 DLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKN 158 (365)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 55578889999999998 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHH----------HHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHHH
Q 013800 258 ATMADPGDGESWMQY----------AKLVWELHRDQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGEDDKAQE 325 (436)
Q Consensus 258 al~~~p~~~~~~~~l----------a~~~~~~~~d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~ 325 (436)
++++.|.+..++..+ |.++...++ +++|+.+|+++++++|+ ++.++..+|.++...|++++|+..++
T Consensus 159 al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 237 (365)
T 4eqf_A 159 WIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV-LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFN 237 (365)
T ss_dssp HHHHCHHHHCC-------------------CCHH-HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHhCccchHHHhhhccchHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999877666555 888888875 99999999999999999 99999999999999999999999999
Q ss_pred HHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---
Q 013800 326 EHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA--- 390 (436)
Q Consensus 326 ~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~--- 390 (436)
++++. .++...|++++|+.+|+++++++|+++.++.++|.++..+|+ +++|+..|++++++.|+
T Consensus 238 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~ 316 (365)
T 4eqf_A 238 AALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA-YREAVSNFLTALSLQRKSRN 316 (365)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHCC--
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCcccCC
Confidence 88876 888899999999999999999999999999999999999999 99999999999999887
Q ss_pred ---------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 391 ---------DSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 391 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
+..+|..++.++..+|+.+.+..+.++.+..
T Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~ 356 (365)
T 4eqf_A 317 QQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDV 356 (365)
T ss_dssp ----------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGG
T ss_pred CcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHH
Confidence 3578999999999999999998887765443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=195.83 Aligned_cols=181 Identities=17% Similarity=0.064 Sum_probs=170.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...++ +++|+..|+++++++|++..++..+|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGL-VNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999875 99999999999999999999999999
Q ss_pred HHHHHccCchHHHHHHHHHHHHhHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 013800 309 CFLWEMEDDGEDDKAQEEHIQVLPIQSK-----------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKA 377 (436)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A 377 (436)
.++... |++++|+..|+++++++|+++.++.++|.++..+|+ +++|
T Consensus 81 ----------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~-~~~A 137 (217)
T 2pl2_A 81 ----------------------EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE-RDKA 137 (217)
T ss_dssp ----------------------HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHH
T ss_pred ----------------------HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-hHHH
Confidence 666667 999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhh
Q 013800 378 LCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANV 434 (436)
Q Consensus 378 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~-~an~ 434 (436)
+..|+++++++ +++.++.++|.++..+|++++|+..|+++++++|.+..+.. .+.+
T Consensus 138 ~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~ 194 (217)
T 2pl2_A 138 EASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASA 194 (217)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999887654 4443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-24 Score=188.72 Aligned_cols=168 Identities=15% Similarity=0.131 Sum_probs=98.1
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
..|.++|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|.++.++..+|.++..
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFM 85 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 44555555555555666666666666555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
.++ ++.|+..+++++.++|.+..++..+| .++..+|++++|+..|+++++++|.++.
T Consensus 86 ~~~-~~~a~~~~~~a~~~~~~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 142 (184)
T 3vtx_A 86 IDE-KQAAIDALQRAIALNTVYADAYYKLG----------------------LVYDSMGEHDKAIEAYEKTISIKPGFIR 142 (184)
T ss_dssp TTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cCC-HHHHHHHHHHHHHhCccchHHHHHHH----------------------HHHHHhCCchhHHHHHHHHHHhcchhhh
Confidence 543 55555555555555555555555555 5555555555555555555555555555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 359 IMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
+|+++|.++..+|+ +++|+..|+++++++|+
T Consensus 143 ~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 143 AYQSIGLAYEGKGL-RDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHhCCcc
Confidence 55555555555555 55555555555555554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-25 Score=209.76 Aligned_cols=243 Identities=11% Similarity=0.014 Sum_probs=222.4
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
++.++..++..++...+ ....+|..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..+++
T Consensus 36 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 114 (327)
T 3cv0_A 36 NLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 114 (327)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44577888888888888 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHH--------------HH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH
Q 013800 258 ATMADPGDGESWMQY--------------AK-LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK 322 (436)
Q Consensus 258 al~~~p~~~~~~~~l--------------a~-~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 322 (436)
+++..|.+...+..+ +. ++...++ +++|+.+++++++..|.+..++..+|.++...|++++|..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 193 (327)
T 3cv0_A 115 WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE-YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAA 193 (327)
T ss_dssp HHHTSTTTTTC--------------------CCTTSHHH-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHccc-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 999999988887777 65 5666664 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 323 AQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 323 ~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
.+.+++.. .++...|++++|+..|+++++..|++..++..+|.++...|+ +++|+..|++++...|.
T Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 194 NLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ-YDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCc
Confidence 99988876 788899999999999999999999999999999999999999 99999999999999999
Q ss_pred ------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013800 391 ------------DSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 391 ------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 423 (436)
+..++..++.++..+|++++|...++++++..|
T Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 273 GTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp SCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred cccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 789999999999999999999999998877644
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.3e-24 Score=186.30 Aligned_cols=172 Identities=13% Similarity=0.126 Sum_probs=166.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 230 CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYAC 309 (436)
Q Consensus 230 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~ 309 (436)
+++.+|+++|.++..+|++++|+..|+++++++|+++.++..+|.++...++ +++|+..+++++...|++..++..+|
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~- 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGL-PNDAIESLKKFVVLDTTSAEAYYILG- 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCCCHHHHHHHH-
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCchhHHHHHHHH-
Confidence 5778999999999999999999999999999999999999999999999975 99999999999999999999999999
Q ss_pred HHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013800 310 FLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389 (436)
Q Consensus 310 ~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p 389 (436)
.++...++++.|+..+.+++.++|.+..++..+|.++..+|+ +++|+..|+++++++|
T Consensus 81 ---------------------~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 81 ---------------------SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE-HDKAIEAYEKTISIKP 138 (184)
T ss_dssp ---------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCT
T ss_pred ---------------------HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC-chhHHHHHHHHHHhcc
Confidence 888899999999999999999999999999999999999999 9999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 390 ADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 390 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
.++.++..+|.++..+|++++|+..|+++++++|+.
T Consensus 139 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 139 GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 999999999999999999999999999999999864
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-23 Score=193.08 Aligned_cols=209 Identities=16% Similarity=0.163 Sum_probs=200.0
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
+..|..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 278 ELHRDQHRALTYFERAAL--AAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
..++ +++|+.+|++++. ..|.+..++..+| .++...|++++|+.+|+++++..|.
T Consensus 117 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~la----------------------~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (252)
T 2ho1_A 117 EQKR-YEEAYQRLLEASQDTLYPERSRVFENLG----------------------LVSLQMKKPAQAKEYFEKSLRLNRN 173 (252)
T ss_dssp HTTC-HHHHHHHHHHHTTCTTCTTHHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred HHhH-HHHHHHHHHHHHhCccCcccHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 9875 9999999999999 8888999999999 8888999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 356 ~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
+..++..+|.++...|+ +++|+..|+++++..|.+..++..++.++...|++++|.+++++++++.|.......
T Consensus 174 ~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 174 QPSVALEMADLLYKERE-YVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred cHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 99999999999999999 999999999999999999999999999999999999999999999999998776543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-23 Score=215.38 Aligned_cols=252 Identities=12% Similarity=0.078 Sum_probs=232.4
Q ss_pred CChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 180 VSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
+++..++...+.. + .+...|..++.++...|++++|+.+|+++++.+|++..++..++.++...|++++|+..+++++
T Consensus 289 ~~A~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
T 2xpi_A 289 RRAEDYLSSINGL-E-KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366 (597)
T ss_dssp HHHHHHHHTSTTG-G-GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC-C-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3566667766665 3 5678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---------
Q 013800 260 MADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------- 330 (436)
Q Consensus 260 ~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------- 330 (436)
+..|.+..++..+|.++...++ +++|+.+|+++++++|.+..+|..++.++...|++++|...+++++..
T Consensus 367 ~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 445 (597)
T 2xpi_A 367 DRHPEKAVTWLAVGIYYLCVNK-ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYL 445 (597)
T ss_dssp HHCTTSHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHH
T ss_pred hhCcccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence 9999999999999999999975 999999999999999999999999999999999999999999987765
Q ss_pred ---hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHH
Q 013800 331 ---LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA------SPAD-SHVLAAYAC 400 (436)
Q Consensus 331 ---~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~------~p~~-~~~~~~la~ 400 (436)
.++...|++++|+.+|+++++..|.++.+|..+|.++...|+ +++|+..|+++++. +|++ ..++..++.
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 524 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD-MQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH
Confidence 788899999999999999999999999999999999999999 99999999999998 6664 789999999
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhhc
Q 013800 401 FLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANVY 435 (436)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~l~p~~~~a~~-~an~y 435 (436)
++...|++++|++.|++++++.|....... .+++|
T Consensus 525 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (597)
T 2xpi_A 525 AYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVY 560 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 999999999999999999999998766544 55544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-23 Score=184.60 Aligned_cols=210 Identities=15% Similarity=0.121 Sum_probs=199.5
Q ss_pred ChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLV 276 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 276 (436)
.+..|..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|++++..+|.+..++..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-cCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC
Q 013800 277 WEL-HRDQHRALTYFERAAL--AAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN 353 (436)
Q Consensus 277 ~~~-~~d~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 353 (436)
... ++ +++|+.+|+++++ ..|.+..++..+| .++...|++++|+.+|+++++..
T Consensus 87 ~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~----------------------~~~~~~~~~~~A~~~~~~~~~~~ 143 (225)
T 2vq2_A 87 CGRLNR-PAESMAYFDKALADPTYPTPYIANLNKG----------------------ICSAKQGQFGLAEAYLKRSLAAQ 143 (225)
T ss_dssp HTTTCC-HHHHHHHHHHHHTSTTCSCHHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcCc-HHHHHHHHHHHHcCcCCcchHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhC
Confidence 988 75 9999999999999 6677789999999 88899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 354 PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP-ADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 354 p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
|.++.++..+|.++...|+ +++|+..+++++...| .+..++..++.++...|+.++|..+++.+....|+......
T Consensus 144 ~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 144 PQFPPAFKELARTKMLAGQ-LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999 9999999999999999 99999999999999999999999999999999999877654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-24 Score=198.96 Aligned_cols=230 Identities=11% Similarity=0.072 Sum_probs=180.0
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD----GESWMQYAK 274 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~ 274 (436)
..+...|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++ .|.+ ..++..+|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 34566677777777777777777777777777777777777777777777777777777777 3332 344777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHH
Q 013800 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGA 342 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A 342 (436)
++...++ +++|+.+|+++++++|.+..++..+|.++...|++++|+..+++++.. ......+++++|
T Consensus 83 ~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 83 ILMKKGQ-DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHTTC-HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHccc-HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 7777664 777777777777777777777777777777777777777777654432 255566799999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHCCChHHHH
Q 013800 343 EEYFSRAILANPGDGEIMSQYAKLVWELHHD--HDKALCYFERAVQAS---PA-----DSHVLAAYACFLWETEEDEDDS 412 (436)
Q Consensus 343 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~d--~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A~ 412 (436)
+.+|+++++++|++..++..+|.++..+|++ +++|+..|++++++. |+ ...++..+|.++...|++++|+
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999998752 567999999999886 54 2368899999999999999999
Q ss_pred HHHHHHHhhCCCChhHHh
Q 013800 413 KSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 413 ~~~~~al~l~p~~~~a~~ 430 (436)
++|+++++++|+...+..
T Consensus 242 ~~~~~al~~~p~~~~a~~ 259 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAID 259 (272)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhcCccHHHHHH
Confidence 999999999999888765
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-23 Score=212.39 Aligned_cols=246 Identities=15% Similarity=0.086 Sum_probs=217.9
Q ss_pred cCCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
.++..|..++..++.+++ .+..+|..+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+
T Consensus 39 g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp TCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 477899999999999999 7899999999999999999999999999999999999999999999999999888877552
Q ss_pred --------------------------------------------------------------------------------
Q 013800 257 -------------------------------------------------------------------------------- 256 (436)
Q Consensus 257 -------------------------------------------------------------------------------- 256 (436)
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (537)
T 3fp2_A 118 VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLS 197 (537)
T ss_dssp HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHH
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHH
Confidence
Q ss_pred -----------------------------HHHHhCCCCHH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 257 -----------------------------HATMADPGDGE-------SWMQYAKLVWELHRDQHRALTYFERAALAAPQD 300 (436)
Q Consensus 257 -----------------------------~al~~~p~~~~-------~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~ 300 (436)
++++.+|+++. ++..+|.++...+ ++++|+.+|+++++.+|+
T Consensus 198 ~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~~~~~~~~- 275 (537)
T 3fp2_A 198 DALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN-NLLDAQVLLQESINLHPT- 275 (537)
T ss_dssp HHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhcCCC-
Confidence 33344666644 4666777777766 499999999999999999
Q ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 301 SNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVW 368 (436)
Q Consensus 301 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 368 (436)
..++..+|.++...|++++|...+.+++.. .++...|++++|+..|+++++.+|.++.++..+|.++.
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999988776 78889999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013800 369 ELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 369 ~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 426 (436)
..|+ +++|+..|+++++..|++..++..+|.++...|++++|+..|++++.+.|...
T Consensus 356 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 356 KQGK-FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HTTC-HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 9999 99999999999999999999999999999999999999999999999876543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-23 Score=211.26 Aligned_cols=248 Identities=13% Similarity=0.103 Sum_probs=224.8
Q ss_pred CCChHHHHHhhcCCCCCCCh-------hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 013800 179 PVSPPMYLAMGLGISVPGFD-------DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRA 251 (436)
Q Consensus 179 p~~a~~~~~~~~~~~~~~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A 251 (436)
...+..++..++...+ .+. .++..+|.++...|++++|+.+|++++..+|+ ..++..+|.++...|++++|
T Consensus 218 ~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 218 LTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHH
Confidence 4467778888888888 443 46888899999999999999999999999998 99999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-
Q 013800 252 EDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV- 330 (436)
Q Consensus 252 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~- 330 (436)
+.+|+++++.+|.++.++..+|.++...++ +++|+.+|+++++.+|++..++..+|.++...|++++|...+.+++..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQD-YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999875 999999999999999999999999999999999999999999988876
Q ss_pred -----------hHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHh----------cCCHHHHHHHHHH
Q 013800 331 -----------LPIQSKGDLEGAEEYFSRAILANPGDGE------IMSQYAKLVWEL----------HHDHDKALCYFER 383 (436)
Q Consensus 331 -----------~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~----------g~d~~~A~~~~~~ 383 (436)
.++...|++++|+.+|+++++..|.+.. .+..+|.++... |+ +++|+..|++
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~A~~~~~~ 453 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK-FNAAIKLLTK 453 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH-HHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH-HHHHHHHHHH
Confidence 8889999999999999999999876543 356778899998 99 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 384 AVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 384 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
+++.+|++..++..+|.++..+|++++|++.|++++++.|.......
T Consensus 454 a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 454 ACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999999999999999999999999999999877654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=214.16 Aligned_cols=210 Identities=15% Similarity=0.004 Sum_probs=195.8
Q ss_pred hHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 182 PPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDS-AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
+...+.......+ ..+..|..+|.++...|++ ++|+.+|+++++.+|+++.+|..+|.+|...|++++|+.+|+++++
T Consensus 87 al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 165 (474)
T 4abn_A 87 TLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT 165 (474)
T ss_dssp HHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555666666 6888999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 013800 261 ADPGDGESWMQYAKLVWEL---------HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~---------~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 331 (436)
++|+ ..++..+|.++... ++ +++|+.+|+++++++|++..+|..+| .
T Consensus 166 ~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg----------------------~ 221 (474)
T 4abn_A 166 HCKN-KVSLQNLSMVLRQLQTDSGDEHSRH-VMDSVRQAKLAVQMDVLDGRSWYILG----------------------N 221 (474)
T ss_dssp TCCC-HHHHHHHHHHHTTCCCSCHHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------H
T ss_pred hCCC-HHHHHHHHHHHHHhccCChhhhhhh-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------------H
Confidence 9999 79999999999888 75 99999999999999999999999999 6
Q ss_pred HHHHc--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 332 PIQSK--------GDLEGAEEYFSRAILANP---GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 332 ~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~ 400 (436)
++... |++++|+.+|+++++++| .++.+|+++|.++..+|+ +++|+..|+++++++|++..++..++.
T Consensus 222 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~a~~~l~~ 300 (474)
T 4abn_A 222 AYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES-YGEALEGFSQAAALDPAWPEPQQREQQ 300 (474)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 66666 889999999999999999 999999999999999999 999999999999999999999999999
Q ss_pred HHHHCCChHHHHHHHHH
Q 013800 401 FLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 401 ~~~~~g~~~~A~~~~~~ 417 (436)
++..+|++++|++.+.+
T Consensus 301 ~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 301 LLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999986643
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.2e-23 Score=186.42 Aligned_cols=210 Identities=12% Similarity=0.092 Sum_probs=179.8
Q ss_pred ChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP-CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
++..|..+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+.+|+++++.+|.+..++..+|.+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 457889999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
+...++ +++|+.+|+++++++|++...+..++.++...| .++...|++++|+..|+++++++|+
T Consensus 86 ~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g---------------~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 86 YRDMKN-NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEG---------------QKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHHccc-HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh---------------HHHHHhccHHHHHHHHHHHHhcCCC
Confidence 999975 999999999999999999966555555555555 8999999999999999999999999
Q ss_pred --CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 356 --DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 356 --~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
++.+++++|.++...|+ ..++++..+.+.+...+ .+......+.+++|+.+|++++++.|+......
T Consensus 150 ~~~~~~~~~l~~~~~~~~~------~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~ 218 (228)
T 4i17_A 150 KWKTDALYSLGVLFYNNGA------DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQ 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH------HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Confidence 99999999999988776 34556666666654433 233344556678888888888888888776554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=220.96 Aligned_cols=171 Identities=18% Similarity=0.233 Sum_probs=109.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY 307 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l 307 (436)
.|++++++.++|.++..+|++++|+++|+++++++|+++.++.++|.+|..+++ +++|+.+|+++++++|++..+++++
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~-~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK-LQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 455566666666666666666666666666666666666666666666666653 6666666666666666666666666
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
| .++..+|++++|+++|+++++++|+++.+++++|.++..+|+ +++|+..|++++++
T Consensus 84 g----------------------~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~-~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 84 G----------------------NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN-IPEAIASYRTALKL 140 (723)
T ss_dssp H----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred H----------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Confidence 6 555566666666666666666666666666666666666666 66666666666666
Q ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 388 SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 388 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
+|++..++.++|.++..+|++++|++.+++++++.
T Consensus 141 ~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 141 KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence 66666666666666666666666666666666553
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=212.59 Aligned_cols=249 Identities=14% Similarity=0.127 Sum_probs=229.5
Q ss_pred CCChHHHHHhhcC-----C--CCC------CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013800 179 PVSPPMYLAMGLG-----I--SVP------GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKK 245 (436)
Q Consensus 179 p~~a~~~~~~~~~-----~--~~~------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~ 245 (436)
+..+..++..++. + .+. .....|..+|.++...|++++|+.+|+++++.+|+ ..++..+|.++...
T Consensus 205 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~ 283 (514)
T 2gw1_A 205 YDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADR 283 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHC
Confidence 3456666777666 4 221 23578899999999999999999999999999999 99999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHH
Q 013800 246 GDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE 325 (436)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 325 (436)
|++++|+..|++++..+|.++.++..+|.++...++ +++|+.+|+++++..|.+..++..+|.++...|++++|...+.
T Consensus 284 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 284 NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN-YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp SCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC-TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999875 9999999999999999999999999999999999999999999
Q ss_pred HHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---hcCCHHHHHHHHHHH
Q 013800 326 EHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGE------IMSQYAKLVWE---LHHDHDKALCYFERA 384 (436)
Q Consensus 326 ~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~g~d~~~A~~~~~~a 384 (436)
+.+.. .++...|++++|+.+|++++...|.+.. ++..+|.++.. .|+ +++|+..|+++
T Consensus 363 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~A~~~~~~a 441 (514)
T 2gw1_A 363 EAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN-FIEATNLLEKA 441 (514)
T ss_dssp HHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH-HHHHHHHHHHH
T ss_pred HHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC-HHHHHHHHHHH
Confidence 88876 7888999999999999999999998855 99999999999 999 99999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 385 VQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 385 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
+..+|++..++..+|.++...|++++|+..|++++++.|.......
T Consensus 442 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 487 (514)
T 2gw1_A 442 SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQ 487 (514)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHH
Confidence 9999999999999999999999999999999999999998776544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-23 Score=219.49 Aligned_cols=171 Identities=17% Similarity=0.193 Sum_probs=165.6
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
+++.++.++|.++.++|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+++|+++++++|+++.+|.++|.+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
+..+++ +++|+++|+++++++|++..++.++| .++..+|++++|+..|+++++++|+
T Consensus 87 l~~~g~-~~~A~~~~~kAl~l~P~~~~a~~~Lg----------------------~~~~~~g~~~eAi~~~~~Al~l~P~ 143 (723)
T 4gyw_A 87 LKEMQD-VQGALQCYTRAIQINPAFADAHSNLA----------------------SIHKDSGNIPEAIASYRTALKLKPD 143 (723)
T ss_dssp HHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred HHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999985 99999999999999999999999999 8899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 356 ~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
++.++.++|.++..+|+ +++|++.+++++++.|+
T Consensus 144 ~~~a~~~L~~~l~~~g~-~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 144 FPDAYCNLAHCLQIVCD-WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp CHHHHHHHHHHHHHTTC-CTTHHHHHHHHHHHHHH
T ss_pred ChHHHhhhhhHHHhccc-HHHHHHHHHHHHHhChh
Confidence 99999999999999999 99999999999987654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-22 Score=202.14 Aligned_cols=248 Identities=13% Similarity=0.093 Sum_probs=174.3
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
++..|..++..++...+ +..+|..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++
T Consensus 21 ~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 98 (514)
T 2gw1_A 21 KYDDAIKYYNWALELKE--DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSV 98 (514)
T ss_dssp CHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCc--cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 55566677777776665 3666777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhCCCC------------------------------------------------------------------------
Q 013800 258 ATMADPGD------------------------------------------------------------------------ 265 (436)
Q Consensus 258 al~~~p~~------------------------------------------------------------------------ 265 (436)
++...|.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (514)
T 2gw1_A 99 LSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178 (514)
T ss_dssp HHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCS
T ss_pred HHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHH
Confidence 77776522
Q ss_pred -------HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHH-----h--C-------CCCHHHHHHHHHHHHHccCchHHH
Q 013800 266 -------GESWMQYAKLVWE---LHRDQHRALTYFERAAL-----A--A-------PQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 266 -------~~~~~~la~~~~~---~~~d~~~A~~~~~~al~-----~--~-------p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
..++..+|.+++. .+ ++++|+.+|+++++ + + |.+..++..+|.++...|++++|.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 257 (514)
T 2gw1_A 179 NYDESNEADKELMNGLSNLYKRSPE-SYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAH 257 (514)
T ss_dssp SCCSSCHHHHHHHHHHHHHSSCCTT-HHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHhhhhc-cHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence 4555556655544 33 47777777777777 4 3 334556677777777777777777
Q ss_pred HHHHHHHHH-----------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 322 KAQEEHIQV-----------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 322 ~~~~~~~~~-----------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
..+++.+.. .++...|++++|+..|++++..+|.+..++..+|.++...|+ +++|+..|+++++..|.
T Consensus 258 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~ 336 (514)
T 2gw1_A 258 EDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN-YDQAGKDFDKAKELDPE 336 (514)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC-TTHHHHHHHHHHHTCSS
T ss_pred HHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhChh
Confidence 777765543 566677777777777777777777777777777777777777 77777777777777777
Q ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHH
Q 013800 391 DSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAV 429 (436)
Q Consensus 391 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~ 429 (436)
+..++..+|.++...|++++|+..+++++...|......
T Consensus 337 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 375 (514)
T 2gw1_A 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVP 375 (514)
T ss_dssp CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHH
Confidence 777777777777777777777777777777777655443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-22 Score=182.07 Aligned_cols=204 Identities=14% Similarity=0.159 Sum_probs=186.9
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+++.+..++..++...+ .....+..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|++
T Consensus 38 ~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 116 (243)
T 2q7f_A 38 DYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEK 116 (243)
T ss_dssp ----CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45577777888888888 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG 337 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g 337 (436)
+++..|.++.++..+|.++...++ +++|+.+|+++++..|++..++..+| .++...|
T Consensus 117 ~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~----------------------~~~~~~~ 173 (243)
T 2q7f_A 117 ALRAGMENGDLFYMLGTVLVKLEQ-PKLALPYLQRAVELNENDTEARFQFG----------------------MCLANEG 173 (243)
T ss_dssp HHHHTCCSHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHHT
T ss_pred HHHhCCCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCccHHHHHHHH----------------------HHHHHcC
Confidence 999999999999999999999875 99999999999999999999999999 8888999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013800 338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE 406 (436)
Q Consensus 338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 406 (436)
++++|+..|+++++.+|+++.++..+|.++...|+ +++|+..|+++++++|++..++..++.+....+
T Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN-REKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-TTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC-HHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999 999999999999999999999998887765544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-22 Score=190.33 Aligned_cols=205 Identities=9% Similarity=-0.016 Sum_probs=157.1
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDE--YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLV 276 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 276 (436)
.++..++..+...+++++|++.+++++.. +|+++.+++.+|.++...|++++|++.|++ |.++.++..+|.++
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~ 140 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQIL 140 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHH
Confidence 44555566666666666666666666654 466666666666666666666666666666 66666666666666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 277 WELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 277 ~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
..+|+ +++|++.|+++++.+|++.......+.+ .++...|++++|+..|+++++.+|++
T Consensus 141 ~~~g~-~~~A~~~l~~~~~~~p~~~~~~l~~a~~--------------------~l~~~~~~~~eA~~~~~~~l~~~p~~ 199 (291)
T 3mkr_A 141 LKLDR-LDLARKELKKMQDQDEDATLTQLATAWV--------------------SLAAGGEKLQDAYYIFQEMADKCSPT 199 (291)
T ss_dssp HHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHH--------------------HHHHCTTHHHHHHHHHHHHHHHSCCC
T ss_pred HHCCC-HHHHHHHHHHHHhhCcCcHHHHHHHHHH--------------------HHHhCchHHHHHHHHHHHHHHhCCCc
Confidence 66654 6666666666666666654333322211 22334589999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH-HHHHHHHHHhhCCCChhHHh
Q 013800 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED-DSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~l~p~~~~a~~ 430 (436)
+.+++++|.++..+|+ +++|+..|+++++++|+++.++.+++.++..+|+.++ +.+++++++++.|++.....
T Consensus 200 ~~~~~~la~~~~~~g~-~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGR-WEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999999999999999 9999999999999999999999999999999999987 56899999999999887554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-22 Score=204.54 Aligned_cols=194 Identities=14% Similarity=0.123 Sum_probs=184.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013800 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDL-YRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYF 290 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~ 290 (436)
+.+++++..+++.....|.++.+++.+|.++...|++ ++|+.+|+++++++|+++.+|..+|.+++..++ +++|+.+|
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~ 160 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGD-VTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 4578899999999999999999999999999999999 999999999999999999999999999999985 99999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHH
Q 013800 291 ERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK---------GDLEGAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 291 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~ 361 (436)
+++++++|+ ..++..+| .++... |++++|+.+|+++++++|+++.+|+
T Consensus 161 ~~al~~~p~-~~~~~~lg----------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 217 (474)
T 4abn_A 161 SGALTHCKN-KVSLQNLS----------------------MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWY 217 (474)
T ss_dssp HHHHTTCCC-HHHHHHHH----------------------HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHhhCCC-HHHHHHHH----------------------HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999 79999999 666666 9999999999999999999999999
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 362 QYAKLVWEL--------HHDHDKALCYFERAVQASP---ADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 362 ~la~~~~~~--------g~d~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
++|.++..+ |+ +++|+..|+++++++| .++.++.++|.++..+|++++|++.|+++++++|++..+..
T Consensus 218 ~lg~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 296 (474)
T 4abn_A 218 ILGNAYLSLYFNTGQNPKI-SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQ 296 (474)
T ss_dssp HHHHHHHHHHHHTTCCHHH-HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhhccccch-HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999 99 9999999999999999 99999999999999999999999999999999999887544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-21 Score=179.23 Aligned_cols=219 Identities=12% Similarity=0.093 Sum_probs=199.5
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYRAEDYYNHATMADPGDGESWMQ 271 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (436)
+++.++..+|.++...|++++|+.+|+++++ |+++.+++.+|.++.. .+++++|+.+|+++++.+ ++.+++.
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~ 79 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHL 79 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHH
Confidence 4567888999999999999999999999998 7788999999999999 999999999999999985 8999999
Q ss_pred HHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCchHHHHHHHHHHHH----------hHH
Q 013800 272 YAKLVWE----LHRDQHRALTYFERAALAAPQDSNILAAYACFLWE----MEDDGEDDKAQEEHIQV----------LPI 333 (436)
Q Consensus 272 la~~~~~----~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~----------~~~ 333 (436)
+|.++.. .+ ++++|+.+|+++++. +++.++..+|.++.. .+++++|...+++++.. .++
T Consensus 80 lg~~~~~g~~~~~-~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQ-NTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCCccc-CHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999888 76 599999999999988 489999999999999 99999999999988765 667
Q ss_pred HH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Q 013800 334 QS----KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE----LHHDHDKALCYFERAVQASPADSHVLAAYACFLWE- 404 (436)
Q Consensus 334 ~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 404 (436)
.. .+++++|+.+|+++++. .++.+++.+|.++.. .++ +++|+.+|+++++..| +.++..+|.++..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~-~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKN-FKEALARYSKACELEN--GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCC-HHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCcc-HHHHHHHHHHHHhCCC--HHHHHHHHHHHHcC
Confidence 77 89999999999999987 468999999999999 989 9999999999999876 7899999999999
Q ss_pred ---CCChHHHHHHHHHHHhhCCCCh
Q 013800 405 ---TEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 405 ---~g~~~~A~~~~~~al~l~p~~~ 426 (436)
.+++++|+++|++++++.|...
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999987543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.5e-22 Score=199.90 Aligned_cols=247 Identities=15% Similarity=0.064 Sum_probs=196.0
Q ss_pred CChHHHHHhhcCC---------CCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHH
Q 013800 180 VSPPMYLAMGLGI---------SVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEY--------PCHPLLLRNYAQLL 242 (436)
Q Consensus 180 ~~a~~~~~~~~~~---------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------P~~~~~~~~la~~~ 242 (436)
++|..++.+++.+ .+ ....+|.++|.++..+|++++|+.+|++++++. +..+.++..+|.++
T Consensus 68 ~eAl~~~~kAl~~~~~~~~~~~~~-~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~ 146 (472)
T 4g1t_A 68 EAALECLRKAEELIQQEHADQAEI-RSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTR 146 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCTT-TTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccch-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHH
Confidence 3566666666544 22 455778899999999999999999999998863 45678888888877
Q ss_pred HHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----
Q 013800 243 QKK--GDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH--RDQHRALTYFERAALAAPQDSNILAAYACFLWEM---- 314 (436)
Q Consensus 243 ~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---- 314 (436)
... +++++|+++|+++++++|+++.++..++.+++..+ +++++|+..|+++++++|++..++..++..+...
T Consensus 147 ~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~ 226 (472)
T 4g1t_A 147 LKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEG 226 (472)
T ss_dssp HHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC---
T ss_pred HHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhh
Confidence 764 46899999999999999999999999888866543 3467899999999999999999888888766554
Q ss_pred cCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh------------
Q 013800 315 EDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL------------ 370 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------------ 370 (436)
+++++|...+++++.. .++...|++++|+..|+++++.+|+++.++..+|.++...
T Consensus 227 ~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp ---CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred hHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4667888888877665 7788899999999999999999999999998888887543
Q ss_pred -------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhH
Q 013800 371 -------HHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 371 -------g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a 428 (436)
+. +++|+..|+++++++|.+..++..+|.++...|++++|+.+|++++.+.|.....
T Consensus 307 ~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~ 370 (472)
T 4g1t_A 307 YGKRKLLEL-IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370 (472)
T ss_dssp -CHHHHHHH-HHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHhh-HHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHH
Confidence 23 5678888888888888888888888888888888888888888888887765443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-21 Score=196.31 Aligned_cols=238 Identities=13% Similarity=0.102 Sum_probs=200.9
Q ss_pred ChhhhhhHhhhhhhCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q 013800 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE---------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA------ 261 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 261 (436)
.+..|..+|.++..+|++++|+++|++++++ +|.....|.++|.+|..+|++++|+.+|++++++
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3467888999999999999999999999986 5777889999999999999999999999999987
Q ss_pred --CCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---ccCchHHHHHHHHHHHH-----
Q 013800 262 --DPGDGESWMQYAKLVWELH-RDQHRALTYFERAALAAPQDSNILAAYACFLWE---MEDDGEDDKAQEEHIQV----- 330 (436)
Q Consensus 262 --~p~~~~~~~~la~~~~~~~-~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~----- 330 (436)
.+..+.++..+|.++...+ ++|++|+.+|+++++++|+++.++..++.++.. .++.++|+..+++++..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 3456889999998887765 359999999999999999999999999988554 56678888888887776
Q ss_pred -----------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 331 -----------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYA 399 (436)
Q Consensus 331 -----------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la 399 (436)
.++...+++++|+.+|++++..+|.++.++.++|.++...|+ +++|+..|+++++.+|++..++..+|
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE-PDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 122345788999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHC-------------------CChHHHHHHHHHHHhhCCCChhHHh-hhhhc
Q 013800 400 CFLWET-------------------EEDEDDSKSSDQFQQVAPIRQGAVT-TANVY 435 (436)
Q Consensus 400 ~~~~~~-------------------g~~~~A~~~~~~al~l~p~~~~a~~-~an~y 435 (436)
.+|... +.+++|+..+++++.+.|.+..+.. .+.+|
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~ 344 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLH 344 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHH
Confidence 887643 3467899999999999998776554 44443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-22 Score=180.27 Aligned_cols=156 Identities=13% Similarity=0.107 Sum_probs=148.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP-GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY 307 (436)
Q Consensus 229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l 307 (436)
+.++..++.+|.++...|++++|+..|+++++++| .+..+++.+|.++...++ +++|+.+|+++++.+|++..++..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKK-YKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhc-HHHHHHHHHHHHHhCcchHHHHHHH
Confidence 45779999999999999999999999999999999 899999999999999975 9999999999999999999999999
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhcCCHHHHHHH
Q 013800 308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG-------EIMSQYAKLVWELHHDHDKALCY 380 (436)
Q Consensus 308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~d~~~A~~~ 380 (436)
| .++..+|++++|+..|+++++++|+++ .++..+|.++...|+ +++|+..
T Consensus 83 ~----------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~-~~~A~~~ 139 (228)
T 4i17_A 83 S----------------------AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN-IEKAEEN 139 (228)
T ss_dssp H----------------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred H----------------------HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc-HHHHHHH
Confidence 9 889999999999999999999999999 679999999999999 9999999
Q ss_pred HHHHHHhCCC--CHHHHHHHHHHHHHCCCh
Q 013800 381 FERAVQASPA--DSHVLAAYACFLWETEED 408 (436)
Q Consensus 381 ~~~al~~~p~--~~~~~~~la~~~~~~g~~ 408 (436)
|+++++++|+ +..++..+|.++...|+.
T Consensus 140 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 140 YKHATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999887765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=188.03 Aligned_cols=224 Identities=9% Similarity=-0.037 Sum_probs=170.3
Q ss_pred CCCChHHHHHhhcCCCCC---CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVP---GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDY 254 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~ 254 (436)
+++.+..++..++...+. ..+..|..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.+
T Consensus 20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 99 (275)
T 1xnf_A 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 99 (275)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 445667778877776431 34577888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHH
Q 013800 255 YNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ 334 (436)
Q Consensus 255 ~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 334 (436)
|+++++++|.++.++..+|.++...++ +++|+.+|+++++++|++......++ . ..
T Consensus 100 ~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~----------------------~-~~ 155 (275)
T 1xnf_A 100 FDSVLELDPTYNYAHLNRGIALYYGGR-DKLAQDDLLAFYQDDPNDPFRSLWLY----------------------L-AE 155 (275)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------H-HH
T ss_pred HHHHHhcCccccHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCChHHHHHHH----------------------H-HH
Confidence 888888888888888888888888764 88888888888888888876655544 2 23
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCChHH
Q 013800 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA----DSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~ 410 (436)
..|++++|+..+++++...|.+...+. ++.++...++ .++|+..+++++...|. +..++..+|.++..+|++++
T Consensus 156 ~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 233 (275)
T 1xnf_A 156 QKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 233 (275)
T ss_dssp HHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSC-HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcC-HHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHH
Confidence 457777777777777777777655544 5556666666 77777777777665553 25677777777777777777
Q ss_pred HHHHHHHHHhhCCCChh
Q 013800 411 DSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 411 A~~~~~~al~l~p~~~~ 427 (436)
|+..|++++.++|....
T Consensus 234 A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 234 ATALFKLAVANNVHNFV 250 (275)
T ss_dssp HHHHHHHHHTTCCTTCH
T ss_pred HHHHHHHHHhCCchhHH
Confidence 77777777777775443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=187.74 Aligned_cols=220 Identities=16% Similarity=0.128 Sum_probs=199.9
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhh-------hCCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMP-------NFDDS-------AEAEEYYKRMID-EYPCHPLLLRNYAQLLQKK 245 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~-------~~g~~-------~~A~~~~~~al~-~~P~~~~~~~~la~~~~~~ 245 (436)
.+...|.+++...+ ..+..|..+|.++. ..|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 34 ~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 34 RVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 44567888888888 78999999998876 45886 999999999999 7999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHH
Q 013800 246 GDLYRAEDYYNHATMADPGDGE-SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ 324 (436)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 324 (436)
|++++|+..|++++++.|.++. +|..+|.++...++ +++|+..|+++++..|....++...+
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~a---------------- 175 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAREDARTRHHVYVTAA---------------- 175 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC-HHHHHHHHHHHHTSTTCCTHHHHHHH----------------
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCCCHHHHHHHH----------------
Confidence 9999999999999999999987 99999999988886 99999999999999999988887666
Q ss_pred HHHHHHhHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCC-CHHHHHHHH
Q 013800 325 EEHIQVLPIQ-SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA---SPA-DSHVLAAYA 399 (436)
Q Consensus 325 ~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~---~p~-~~~~~~~la 399 (436)
.+.. ..|++++|+.+|+++++.+|+++.+|..++.++...|+ +++|+..|++++.. .|+ ...+|..++
T Consensus 176 ------~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~~l~p~~~~~l~~~~~ 248 (308)
T 2ond_A 176 ------LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE-DNNTRVLFERVLTSGSLPPEKSGEIWARFL 248 (308)
T ss_dssp ------HHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHSSSSCGGGCHHHHHHHH
T ss_pred ------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 4432 37999999999999999999999999999999999999 99999999999995 553 788999999
Q ss_pred HHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 400 CFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
.++...|+.++|..++++++++.|+.
T Consensus 249 ~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 249 AFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 99999999999999999999999873
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-21 Score=179.55 Aligned_cols=201 Identities=13% Similarity=0.027 Sum_probs=189.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q 013800 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD-------SNI 303 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~-------~~~ 303 (436)
.+..+..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...++ +++|+.+|++++++.|++ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGE-YETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 46789999999999999999999999999999 999999999999999975 999999999999999877 799
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 013800 304 LAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALC 379 (436)
Q Consensus 304 ~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~ 379 (436)
+..+|.++...|++++|...+.+++.. .++...|++++|+..+++++..+|.++.++..+|.++...|+ +++|+.
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~ 160 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD-WPNAVK 160 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC-HHHHHH
Confidence 999999999999999999999999987 788899999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhh
Q 013800 380 YFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANV 434 (436)
Q Consensus 380 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~-~an~ 434 (436)
.|++++..+|.+..++..+|.++...|++++|+..+++++++.|....... .+.+
T Consensus 161 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 216 (258)
T 3uq3_A 161 AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 216 (258)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999876554 4443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=9.4e-22 Score=182.96 Aligned_cols=209 Identities=13% Similarity=-0.010 Sum_probs=181.7
Q ss_pred cCCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013800 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
.+++.+..++..++.+.+ ....+|..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|+
T Consensus 57 ~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 135 (275)
T 1xnf_A 57 GLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL 135 (275)
T ss_dssp TCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHH
Confidence 467788899999999998 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc
Q 013800 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK 336 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 336 (436)
++++++|.+......++.+ ...+ ++++|+..+++++...|.+...+. ++ .++...
T Consensus 136 ~a~~~~~~~~~~~~~~~~~-~~~~-~~~~A~~~~~~~~~~~~~~~~~~~-~~----------------------~~~~~~ 190 (275)
T 1xnf_A 136 AFYQDDPNDPFRSLWLYLA-EQKL-DEKQAKEVLKQHFEKSDKEQWGWN-IV----------------------EFYLGN 190 (275)
T ss_dssp HHHHHCTTCHHHHHHHHHH-HHHH-CHHHHHHHHHHHHHHSCCCSTHHH-HH----------------------HHHTTS
T ss_pred HHHHhCCCChHHHHHHHHH-HHhc-CHHHHHHHHHHHHhcCCcchHHHH-HH----------------------HHHHHh
Confidence 9999999999777766644 5555 599999999999999998866554 55 566678
Q ss_pred CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Q 013800 337 GDLEGAEEYFSRAILANPG----DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDS 412 (436)
Q Consensus 337 g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 412 (436)
++.++|+..+++++...|. ++.++..+|.++...|+ +++|+..|++++.++|.+.. .++.++..+|++++|+
T Consensus 191 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~---~~~~~~~~l~~~~~a~ 266 (275)
T 1xnf_A 191 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD-LDSATALFKLAVANNVHNFV---EHRYALLELSLLGQDQ 266 (275)
T ss_dssp SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCCTTCH---HHHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCchhHH---HHHHHHHHHHHHHhhH
Confidence 8889999999999877664 37899999999999999 99999999999999997643 3477888999999998
Q ss_pred HHH
Q 013800 413 KSS 415 (436)
Q Consensus 413 ~~~ 415 (436)
+.|
T Consensus 267 ~~~ 269 (275)
T 1xnf_A 267 DDL 269 (275)
T ss_dssp ---
T ss_pred HHH
Confidence 887
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-22 Score=184.77 Aligned_cols=225 Identities=11% Similarity=0.020 Sum_probs=194.7
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH----PLLLRNYAQLLQKKGDLYRAED 253 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~~~~~g~~~~A~~ 253 (436)
+++.+..++..++...+ ....+|..+|.++...|++++|+.+|+++++ .|.+ ..++..+|.++...|++++|+.
T Consensus 18 ~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 95 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQ 95 (272)
T ss_dssp CHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHH
Confidence 44577888999999888 6888999999999999999999999999999 4433 3568999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---
Q 013800 254 YYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--- 330 (436)
Q Consensus 254 ~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 330 (436)
+|+++++.+|.++.++..+|.++...++ +++|+.+|+++++++|.+..++..+|......+++++|...++++++.
T Consensus 96 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 96 QYQAAVDRDTTRLDMYGQIGSYFYNKGN-FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174 (272)
T ss_dssp HHHHHHHHSTTCTHHHHHHHHHHHHTTC-HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHccC-HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999999999875 999999999999999999999999995555667999999999988876
Q ss_pred ---------hHHHHcCC---HHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 331 ---------LPIQSKGD---LEGAEEYFSRAILAN---PG-----DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 331 ---------~~~~~~g~---~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
.++...|+ +++|+..|++++++. |+ ...++..+|.++...|+ +++|+.+|+++++++|+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD-KVKADAAWKNILALDPT 253 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTT
T ss_pred chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCcc
Confidence 66777788 899999999999986 44 23789999999999999 99999999999999999
Q ss_pred CHHHHHHHHHHHHHCC
Q 013800 391 DSHVLAAYACFLWETE 406 (436)
Q Consensus 391 ~~~~~~~la~~~~~~g 406 (436)
++.++..++.+....+
T Consensus 254 ~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 254 NKKAIDGLKMKLEHHH 269 (272)
T ss_dssp CHHHHHHHC-------
T ss_pred HHHHHHHhhhhhcccc
Confidence 9999999888765543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.3e-22 Score=194.78 Aligned_cols=249 Identities=11% Similarity=0.051 Sum_probs=200.0
Q ss_pred cCCCChHHHHHhhcCCCCCCCh----hhhhhHhhhhhhCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcC
Q 013800 177 ERPVSPPMYLAMGLGISVPGFD----DAGEVVDLIMPNFDDSAEAEEYYKRMIDE------YPCHPLLLRNYAQLLQKKG 246 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g 246 (436)
.++..+..++..++.+.+ .+. ..|..+|.++...|++++|+.+|+++++. .|....++..+|.++...|
T Consensus 62 g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 140 (411)
T 4a1s_A 62 GDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG 140 (411)
T ss_dssp TCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 466778888888888877 443 57888888888888999999988888887 4666678888888888889
Q ss_pred CHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHhC------
Q 013800 247 DLYRAEDYYNHATMA------DPGDGESWMQYAKLVWELHRD-----------------QHRALTYFERAALAA------ 297 (436)
Q Consensus 247 ~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~d-----------------~~~A~~~~~~al~~~------ 297 (436)
++++|+.+|++++.+ .+....++..+|.++...+ + +++|+.+|++++++.
T Consensus 141 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 219 (411)
T 4a1s_A 141 RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG-KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC-cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence 999999998888887 4556778888888888876 6 888888888888764
Q ss_pred CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 013800 298 PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPGD--- 356 (436)
Q Consensus 298 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~--- 356 (436)
+....++..+|.++...|++++|...+++++.. .++...|++++|+.+|++++.+.+..
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 299 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 234557788888888888888888888876654 67778889999999999888887643
Q ss_pred ---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 357 ---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 357 ---~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
..++..+|.++..+|+ +++|+.+|++++.+.+.. ..++..+|.++..+|++++|+.+|++++++.+....
T Consensus 300 ~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 300 EVEAQSCYSLGNTYTLLHE-FNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc
Confidence 6788888888888888 899999999888875432 357888888899999999999999998888766554
Q ss_pred H
Q 013800 428 A 428 (436)
Q Consensus 428 a 428 (436)
.
T Consensus 379 ~ 379 (411)
T 4a1s_A 379 X 379 (411)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-20 Score=170.91 Aligned_cols=196 Identities=14% Similarity=0.148 Sum_probs=184.7
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
++..+..++..++...+ ....+|..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|++
T Consensus 52 ~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 130 (252)
T 2ho1_A 52 NTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLE 130 (252)
T ss_dssp CTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55578888888888888 68899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH--hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH
Q 013800 258 ATM--ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335 (436)
Q Consensus 258 al~--~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 335 (436)
++. ..|.+..++..+|.++...++ +++|+.+|+++++..|.+..++..++ .++..
T Consensus 131 ~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~la----------------------~~~~~ 187 (252)
T 2ho1_A 131 ASQDTLYPERSRVFENLGLVSLQMKK-PAQAKEYFEKSLRLNRNQPSVALEMA----------------------DLLYK 187 (252)
T ss_dssp HTTCTTCTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCCHHHHHHHH----------------------HHHHH
T ss_pred HHhCccCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCcccHHHHHHHH----------------------HHHHH
Confidence 999 889999999999999999875 99999999999999999999999999 88899
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAY 398 (436)
Q Consensus 336 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~l 398 (436)
.|++++|+.+|+++++..|.+..++..++.++...|+ +++|+.+++++++..|+++.++..+
T Consensus 188 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFED-RDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999 9999999999999999998776543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-21 Score=188.98 Aligned_cols=245 Identities=9% Similarity=0.047 Sum_probs=133.8
Q ss_pred CCCChHHHHHhhcCCCCCCC----hhhhhhHhhhhhhCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC
Q 013800 178 RPVSPPMYLAMGLGISVPGF----DDAGEVVDLIMPNFDDSAEAEEYYKRMIDE------YPCHPLLLRNYAQLLQKKGD 247 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g~ 247 (436)
++..+..++..++.+.+ .+ ...|..+|.++...|++++|+.+|++++.. .|....++..+|.++...|+
T Consensus 24 ~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 102 (406)
T 3sf4_A 24 DCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 102 (406)
T ss_dssp CHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCC
Confidence 44455555555555544 22 244555566666666666666666655554 22234455556666666666
Q ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHh-----
Q 013800 248 LYRAEDYYNHATMADPGD------GESWMQYAKLVWELHRD--------------------QHRALTYFERAALA----- 296 (436)
Q Consensus 248 ~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~d--------------------~~~A~~~~~~al~~----- 296 (436)
+++|+.++++++.+.|.. ..++..+|.++...+ + +++|+.+|++++.+
T Consensus 103 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~ 181 (406)
T 3sf4_A 103 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG 181 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC-CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666666666665554332 335555555555554 4 55566666555554
Q ss_pred -CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 013800 297 -APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPGD- 356 (436)
Q Consensus 297 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~- 356 (436)
.+....++..+|.++...|++++|...+++++.. .++...|++++|+.+|++++.+.+..
T Consensus 182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 261 (406)
T 3sf4_A 182 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc
Confidence 2223345555566666666666665555544433 44555566666666666665554433
Q ss_pred -----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 357 -----GEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 357 -----~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
..++..+|.++...|+ +++|+.+|++++++.+.. ..++..+|.++..+|++++|+.++++++++.+..
T Consensus 262 ~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 262 DRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 4455566666666665 666666666665553332 3455556666666666666666666666554443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=191.59 Aligned_cols=228 Identities=10% Similarity=0.001 Sum_probs=202.9
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMA------DPGD 265 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~ 265 (436)
.....+...|.++...|++++|+.+|+++++..|++. .++..+|.++...|++++|+.++++++.+ .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3456788899999999999999999999999999984 68899999999999999999999999887 3445
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccC--------------------chH
Q 013800 266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD------SNILAAYACFLWEMED--------------------DGE 319 (436)
Q Consensus 266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~ 319 (436)
..++..+|.++...++ +++|+.+|++++++.|.. ..++..+|.++...|+ +++
T Consensus 87 ~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGN-FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 7789999999999875 999999999999987653 5588999999999999 999
Q ss_pred HHHHHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCCHH
Q 013800 320 DDKAQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPGDG------EIMSQYAKLVWELHHDHD 375 (436)
Q Consensus 320 A~~~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~d~~ 375 (436)
|...+.+++.. .++...|++++|+.+|++++++.+... .++.++|.++...|+ ++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~ 244 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE-FE 244 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC-hH
Confidence 99999877653 788899999999999999999866543 389999999999999 99
Q ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 376 KALCYFERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 376 ~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
+|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++.+.+..
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 9999999999987765 6788999999999999999999999999986554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=193.82 Aligned_cols=226 Identities=12% Similarity=0.026 Sum_probs=203.4
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMA------DPGDGE 267 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 267 (436)
...+..+|..+...|++++|+.+|+++++..|++. .++..+|.++...|++++|+.+|++++++ .|....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 35567788899999999999999999999999987 58999999999999999999999999998 566788
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccC-----------------chHHHHHH
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAALA------APQDSNILAAYACFLWEMED-----------------DGEDDKAQ 324 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~~ 324 (436)
++..+|.++...++ +++|+.+|++++++ .+....++..+|.++...|+ +++|...+
T Consensus 128 ~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 128 SSGNLGNTLKVMGR-FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 99999999999975 99999999999998 56678899999999999999 99999999
Q ss_pred HHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCCHHHHHHH
Q 013800 325 EEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPGDG------EIMSQYAKLVWELHHDHDKALCY 380 (436)
Q Consensus 325 ~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~d~~~A~~~ 380 (436)
.+++.. .++...|++++|+.+|++++++.+... .++..+|.++...|+ +++|+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~ 285 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ-FEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC-HHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC-HHHHHHH
Confidence 877653 788899999999999999999876533 389999999999999 9999999
Q ss_pred HHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 381 FERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 381 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
|++++.+.+.. ..++..+|.++..+|++++|+.++++++.+.+..
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 99999987754 5788999999999999999999999999986543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.4e-21 Score=176.28 Aligned_cols=209 Identities=13% Similarity=0.034 Sum_probs=170.5
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH---PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESW 269 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 269 (436)
..+..+..+|..++..|++++|+..|+++++.+|++ ..+++.+|.++...|++++|+..|+++++..|++ +.++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 566788888999999999999999999999999999 8999999999999999999999999999998854 6789
Q ss_pred HHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013800 270 MQYAKLVWE--------LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG 341 (436)
Q Consensus 270 ~~la~~~~~--------~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~ 341 (436)
+.+|.+++. .++ +++|+..|+++++..|++..+...+..+....+....+. +....++...|++++
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~-----~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTD-TRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQ-----YEAARLYERRELYEA 166 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHH-HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhcccccccchh-HHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHccCHHH
Confidence 999999998 775 999999999999999998766633322111110000000 000088899999999
Q ss_pred HHHHHHHHHHhCCC---CHHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHC
Q 013800 342 AEEYFSRAILANPG---DGEIMSQYAKLVWEL----------HHDHDKALCYFERAVQASPADS---HVLAAYACFLWET 405 (436)
Q Consensus 342 A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~d~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~ 405 (436)
|+..|+++++..|+ .+.+++.+|.++..+ |+ +++|+..|+++++..|+++ .+...++.++..+
T Consensus 167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~ 245 (261)
T 3qky_A 167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPER-YRRAVELYERLLQIFPDSPLLRTAEELYTRARQRL 245 (261)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccch-HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999998 567999999999977 78 9999999999999999985 4556667777666
Q ss_pred CChHHH
Q 013800 406 EEDEDD 411 (436)
Q Consensus 406 g~~~~A 411 (436)
++++++
T Consensus 246 ~~~~~~ 251 (261)
T 3qky_A 246 TELEGD 251 (261)
T ss_dssp HHHHTC
T ss_pred HHhhhh
Confidence 665543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.6e-21 Score=203.23 Aligned_cols=184 Identities=11% Similarity=-0.040 Sum_probs=169.3
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMI--------DEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE 267 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--------~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 267 (436)
.++.++...+ ...|++++|++.|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|++..
T Consensus 392 ~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 468 (681)
T 2pzi_A 392 TDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR 468 (681)
T ss_dssp TSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred CCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH
Confidence 3444444444 67799999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHH
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFS 347 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~ 347 (436)
+|+.+|.++...++ +++|+..|+++++++|++..+++++| .++..+|++++ +..|+
T Consensus 469 a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~~~~~~lg----------------------~~~~~~g~~~~-~~~~~ 524 (681)
T 2pzi_A 469 LVWYRAVAELLTGD-YDSATKHFTEVLDTFPGELAPKLALA----------------------ATAELAGNTDE-HKFYQ 524 (681)
T ss_dssp HHHHHHHHHHHHTC-HHHHHHHHHHHHHHSTTCSHHHHHHH----------------------HHHHHHTCCCT-TCHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHH----------------------HHHHHcCChHH-HHHHH
Confidence 99999999999975 99999999999999999999999999 88889999999 99999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 013800 348 RAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEE 407 (436)
Q Consensus 348 ~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 407 (436)
++++++|+++.+|+++|.++..+|+ +++|+..|+++++++|++..++.++|.++...++
T Consensus 525 ~al~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 525 TVWSTNDGVISAAFGLARARSAEGD-RVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHhCCchHHHHHHHHHHHHHcCC-HHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999 9999999999999999999999999999988766
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=183.93 Aligned_cols=245 Identities=9% Similarity=0.041 Sum_probs=196.7
Q ss_pred CCCChHHHHHhhcCCCCCCC----hhhhhhHhhhhhhCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC
Q 013800 178 RPVSPPMYLAMGLGISVPGF----DDAGEVVDLIMPNFDDSAEAEEYYKRMIDE------YPCHPLLLRNYAQLLQKKGD 247 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g~ 247 (436)
+++++..++..++.+.+ .+ ...+..+|.++...|++++|+.++++++.. .|....++..+|.++...|+
T Consensus 20 ~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 98 (338)
T 3ro2_A 20 DCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 98 (338)
T ss_dssp CHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccC
Confidence 44567777888887776 44 367888899999999999999999998876 34456788899999999999
Q ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHhC----
Q 013800 248 LYRAEDYYNHATMADPGD------GESWMQYAKLVWELHRD--------------------QHRALTYFERAALAA---- 297 (436)
Q Consensus 248 ~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~d--------------------~~~A~~~~~~al~~~---- 297 (436)
+++|+.++++++++.+.. ..++..+|.++...+ + +++|+.++++++.+.
T Consensus 99 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~ 177 (338)
T 3ro2_A 99 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG 177 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC-cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999998875543 447888888888876 6 889999999888762
Q ss_pred --CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 013800 298 --PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPGD- 356 (436)
Q Consensus 298 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~- 356 (436)
+....++..+|.++...|++++|...+++++.. .++...|++++|+.++++++.+.+..
T Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 334567888999999999999999988876654 67788899999999999998886654
Q ss_pred -----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 357 -----GEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 357 -----~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
..++..+|.++...|+ +++|+.++++++.+.+.. ..++..+|.++..+|++++|..++++++.+.+..
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 258 DRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred chhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 6788889999999999 999999999998875432 3578889999999999999999999999887654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-21 Score=182.74 Aligned_cols=225 Identities=9% Similarity=-0.000 Sum_probs=198.1
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMA------DPGDGES 268 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~ 268 (436)
..+...|..+...|++++|+.+|+++++..|++. .++..+|.++...|++++|+.++++++.+ .+....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3567789999999999999999999999999984 68889999999999999999999999987 4455788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccC--------------------chHHHH
Q 013800 269 WMQYAKLVWELHRDQHRALTYFERAALAAPQD------SNILAAYACFLWEMED--------------------DGEDDK 322 (436)
Q Consensus 269 ~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~ 322 (436)
+..+|.++...++ +++|+.++++++++.+.. ..++..+|.++...|+ +++|..
T Consensus 86 ~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 86 SGNLGNTLKVLGN-FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccC-HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 9999999999875 999999999999986643 4488999999999999 889988
Q ss_pred HHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHH
Q 013800 323 AQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKAL 378 (436)
Q Consensus 323 ~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~~A~ 378 (436)
.+.+.+.. .++...|++++|+.++++++++.+.. ..++..+|.++...|+ +++|+
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~ 243 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE-FETAS 243 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-HHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC-HHHHH
Confidence 88876543 77888999999999999999886542 3489999999999999 99999
Q ss_pred HHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 379 CYFERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 379 ~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
.++++++.+.+.. ..++..+|.++..+|++++|+.++++++.+.+..
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 9999999887655 5788999999999999999999999999886543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.7e-20 Score=164.74 Aligned_cols=180 Identities=15% Similarity=0.141 Sum_probs=169.4
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
..|+++.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...++ +++|+.+|+++++.+|.+..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKV-NDKAQESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCChHHHHH
Confidence 4677889999999999999999999999999999999999999999999999875 999999999999999999999999
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSK-GDLEGAEEYFSRAIL--ANPGDGEIMSQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~ 383 (436)
+| .++... |++++|+.+|+++++ ..|.+..++..+|.++...|+ +++|+..|++
T Consensus 82 l~----------------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~ 138 (225)
T 2vq2_A 82 YG----------------------WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ-FGLAEAYLKR 138 (225)
T ss_dssp HH----------------------HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HH----------------------HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHH
Confidence 99 888999 999999999999999 677778999999999999999 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC-CChhHHh
Q 013800 384 AVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP-IRQGAVT 430 (436)
Q Consensus 384 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~ 430 (436)
+++..|.+..++..+|.++...|++++|+..+++++.+.| .......
T Consensus 139 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 186 (225)
T 2vq2_A 139 SLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLL 186 (225)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 9999999999999999999999999999999999999998 7665443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-21 Score=166.36 Aligned_cols=147 Identities=12% Similarity=0.065 Sum_probs=98.7
Q ss_pred hHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013800 203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d 282 (436)
.+|.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+++|+++++++|+++.+|..+|.++...++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~- 80 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN- 80 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc-
Confidence 4666777777777777777777777777777777777777777777777777777777777777777777777666653
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY-FSRAILANPGDGEIMS 361 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~ 361 (436)
+++|+.+|+++++++|+++.+++.+| .++...|++++|... ++++++++|+++.++.
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la----------------------~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~ 138 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIA----------------------ELLCKNDVTDGRAKYWVERAAKLFPGSPAVYK 138 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHcCChHHHHHHHHHHHHHhCcCCHHHHH
Confidence 77777777777777777777776666 566666666555544 4666777777666666
Q ss_pred HHHHHHHHhcC
Q 013800 362 QYAKLVWELHH 372 (436)
Q Consensus 362 ~la~~~~~~g~ 372 (436)
.++.++...|+
T Consensus 139 l~~~ll~~~G~ 149 (150)
T 4ga2_A 139 LKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHHHhCc
Confidence 66666666554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.85 E-value=8.1e-20 Score=158.72 Aligned_cols=173 Identities=16% Similarity=0.098 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
...+..+|.++...|++++|+..++++++..|.+..++..+|.++...++ +++|+.+++++++..|.+..++..+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~a--- 83 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGA-VDRGTELLERSLADAPDNVKVATVLG--- 83 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH---
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHH---
Confidence 35667777777777788888887777777777777777777777777764 78888888888888777777777777
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013800 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~ 391 (436)
.++...|++++|+.++++++..+|.++.++..+|.++...|+ +++|+..+++++...|.+
T Consensus 84 -------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 84 -------------------LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR-FDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp -------------------HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC
T ss_pred -------------------HHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc-HHHHHHHHHHHHhcCccc
Confidence 677777788888888888888888888888888888888877 888888888888888877
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhH
Q 013800 392 SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 392 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a 428 (436)
..++..+|.++...|++++|+.++++++++.|.....
T Consensus 144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 144 GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 7888888888888888888888888888777665543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=178.87 Aligned_cols=205 Identities=16% Similarity=0.142 Sum_probs=180.6
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE--------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA------ 261 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 261 (436)
....++..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+|++++..
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 44567888999999999999999999999995 5667789999999999999999999999999987
Q ss_pred --CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 013800 262 --DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA--------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331 (436)
Q Consensus 262 --~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 331 (436)
.|....++..+|.++...++ +++|+.+|++++++. |....++..+| .
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la----------------------~ 161 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGK-YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA----------------------L 161 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----------------------H
T ss_pred CCChHHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH----------------------H
Confidence 35567899999999998875 999999999999984 45567778888 8
Q ss_pred HHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------------
Q 013800 332 PIQSKGDLEGAEEYFSRAILA--------NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA---------------- 387 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~---------------- 387 (436)
++...|++++|+.+|++++++ .|....++..+|.++...|+ +++|+.+|+++++.
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 240 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK-FKQAETLYKEILTRAHEREFGSVDDENKPI 240 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHC------CCH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 888899999999999999988 66677889999999999999 99999999999874
Q ss_pred ---------------------------------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 388 ---------------------------------SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 388 ---------------------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
.|....++..+|.++..+|++++|+++|++++++.|.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 4556688999999999999999999999999998764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=168.87 Aligned_cols=177 Identities=10% Similarity=-0.003 Sum_probs=134.1
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRN----------------YAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
...+...|..+...|++++|+.+|+++++.+|+++.+++. +|.++...|++++|+..|++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4567788888888888999999999888888888888888 888888888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC--CH
Q 013800 262 DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG--DL 339 (436)
Q Consensus 262 ~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g--~~ 339 (436)
+|+++.++..+|.++...++ +++|+.+|+++++++|+++.+++.+| .++...| +.
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~lg----------------------~~~~~~~~~~~ 140 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQ-EKDALRMYEKILQLEADNLAANIFLG----------------------NYYYLTAEQEK 140 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHH----------------------HHHHHHhHHHH
Confidence 88888888888888888874 88888888888888888888888888 5554444 34
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 340 EGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 340 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~ 400 (436)
..+...|++++...|. ..+++.+|.++...|+ +++|+..|+++++++|+ ..+...+..
T Consensus 141 ~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~-~~~A~~~~~~al~l~P~-~~~~~~l~~ 198 (208)
T 3urz_A 141 KKLETDYKKLSSPTKM-QYARYRDGLSKLFTTR-YEKARNSLQKVILRFPS-TEAQKTLDK 198 (208)
T ss_dssp HHHHHHHC---CCCHH-HHHHHHHHHHHHHHHT-HHHHHHHHHHHTTTSCC-HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCch-hHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 5566677766543322 3466777888888888 88888888888888886 333333443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.85 E-value=6e-20 Score=170.80 Aligned_cols=182 Identities=16% Similarity=0.061 Sum_probs=165.0
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 013800 225 IDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD- 300 (436)
Q Consensus 225 l~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~- 300 (436)
....|.++..++.+|..++..|++++|+..|+++++..|.+ +.+++.+|.+++..++ +++|+..|+++++..|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~-~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKE-YLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHCCCCc
Confidence 45688999999999999999999999999999999999999 9999999999999985 999999999999998854
Q ss_pred --HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH----------
Q 013800 301 --SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS--------KGDLEGAEEYFSRAILANPGDGEIM---------- 360 (436)
Q Consensus 301 --~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~---------- 360 (436)
..+++.+| .++.. .|++++|+..|+++++.+|++..++
T Consensus 87 ~~~~a~~~lg----------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~ 144 (261)
T 3qky_A 87 RVPQAEYERA----------------------MCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR 144 (261)
T ss_dssp THHHHHHHHH----------------------HHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHH----------------------HHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence 67888999 77777 9999999999999999999986665
Q ss_pred -------HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHC----------CChHHHHHHHHHHHh
Q 013800 361 -------SQYAKLVWELHHDHDKALCYFERAVQASPA---DSHVLAAYACFLWET----------EEDEDDSKSSDQFQQ 420 (436)
Q Consensus 361 -------~~la~~~~~~g~d~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~ 420 (436)
+.+|.++...|+ +++|+..|+++++..|+ ...+++.+|.++..+ |++++|+..|+++++
T Consensus 145 ~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 145 AKLARKQYEAARLYERREL-YEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 888999999999 99999999999999998 457999999999977 899999999999999
Q ss_pred hCCCChhHHh
Q 013800 421 VAPIRQGAVT 430 (436)
Q Consensus 421 l~p~~~~a~~ 430 (436)
..|+...+..
T Consensus 224 ~~p~~~~~~~ 233 (261)
T 3qky_A 224 IFPDSPLLRT 233 (261)
T ss_dssp HCTTCTHHHH
T ss_pred HCCCChHHHH
Confidence 9999875443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.85 E-value=9.5e-20 Score=158.30 Aligned_cols=171 Identities=14% Similarity=0.139 Sum_probs=164.1
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
...+..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013800 278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG 357 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 357 (436)
..++ +++|+.+|++++...|.+..++..+| .++...|++++|+.+++++++..|.++
T Consensus 88 ~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~a----------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~ 144 (186)
T 3as5_A 88 QVQK-YDLAVPLLIKVAEANPINFNVRFRLG----------------------VALDNLGRFDEAIDSFKIALGLRPNEG 144 (186)
T ss_dssp HHTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HhcC-HHHHHHHHHHHHhcCcHhHHHHHHHH----------------------HHHHHcCcHHHHHHHHHHHHhcCccch
Confidence 9975 99999999999999999999999999 888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
.++..+|.++...|+ +++|+.+++++++..|++.
T Consensus 145 ~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 145 KVHRAIAFSYEQMGR-HEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCch
Confidence 999999999999999 9999999999999988764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-20 Score=167.76 Aligned_cols=176 Identities=11% Similarity=0.045 Sum_probs=154.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHH
Q 013800 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ----------------YAKLVWELHRDQHRALTYFERAA 294 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~~~d~~~A~~~~~~al 294 (436)
.+..++..|..+...|++++|+..|+++++.+|+++.+|+. +|.++...++ +++|+.+|++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al 81 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN-YDKAYLFYKELL 81 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
Confidence 56778999999999999999999999999999999999999 9999999875 999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-C
Q 013800 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH-D 373 (436)
Q Consensus 295 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-d 373 (436)
+++|+++.++..+| .++...|++++|+.+|+++++++|+++.+++++|.+++..|+ +
T Consensus 82 ~~~p~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 82 QKAPNNVDCLEACA----------------------EMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHCTTCHHHHHHHH----------------------HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Confidence 99999999999999 888999999999999999999999999999999999987764 1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 374 HDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 374 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
...+...+++++...|. ..+++.+|.++..+|++++|+.+|++++++.|+......
T Consensus 140 ~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 195 (208)
T 3urz_A 140 KKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred HHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 45677788777643332 357788999999999999999999999999998655443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.3e-19 Score=167.91 Aligned_cols=203 Identities=13% Similarity=0.022 Sum_probs=171.6
Q ss_pred CChHHHHHhhcC--CCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 180 VSPPMYLAMGLG--ISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 180 ~~a~~~~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+.+...+...+. ..| +++..+..+|.++...|++++|+..|++ |++..++..+|.++..+|++++|+..|++
T Consensus 82 ~~A~~~l~~ll~~~~~P-~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDV-TNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCC-SCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCC-CCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 345555555443 356 7888999999999999999999999998 89999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc
Q 013800 258 ATMADPGDGESWMQYAKLVWEL-HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK 336 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~-~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 336 (436)
+++.+|++.......+.+.... .+++++|+.+|+++++..|+++.+++++| .++..+
T Consensus 156 ~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la----------------------~~~~~~ 213 (291)
T 3mkr_A 156 MQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQA----------------------ACHMAQ 213 (291)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHH----------------------HHHHHT
T ss_pred HHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHH----------------------HHHHHc
Confidence 9999999875544444322222 23599999999999999999999999999 889999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013800 337 GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDK-ALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 337 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 415 (436)
|++++|+..|+++++.+|+++.++.++|.++..+|+ +.+ +..+++++++++|+++.+.. ...+.+.++++..-|
T Consensus 214 g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~-~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 214 GRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK-PPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999 665 67899999999999987654 344555566665544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-19 Score=173.96 Aligned_cols=183 Identities=15% Similarity=0.154 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHH
Q 013800 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-------KGDL-------YRAEDYYNHATM-ADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 279 (436)
++|+..|++++..+|.++.+|+.+|.++.. .|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874 5885 999999999999 7999999999999998888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 280 HRDQHRALTYFERAALAAPQDSN-ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
++ +++|+..|++++++.|.+.. +|..++ .++.+.|++++|+..|+++++..|....
T Consensus 113 ~~-~~~A~~~~~~al~~~p~~~~~~~~~~~----------------------~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 169 (308)
T 2ond_A 113 MK-YEKVHSIYNRLLAIEDIDPTLVYIQYM----------------------KFARRAEGIKSGRMIFKKAREDARTRHH 169 (308)
T ss_dssp TC-HHHHHHHHHHHHTSSSSCTHHHHHHHH----------------------HHHHHHHCHHHHHHHHHHHHTSTTCCTH
T ss_pred CC-HHHHHHHHHHHHhccccCccHHHHHHH----------------------HHHHHhcCHHHHHHHHHHHHhcCCCCHH
Confidence 74 99999999999999999987 899999 7778889999999999999999999988
Q ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 359 IMSQYAKLVWE-LHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 359 ~~~~la~~~~~-~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
+|...+.+... .|+ +++|+..|+++++.+|+++.+|..++.++..+|++++|+.+|++++..
T Consensus 170 ~~~~~a~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 170 VYVTAALMEYYCSKD-KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHHHTSCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88877766554 578 999999999999999999999999999999999999999999999996
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.1e-21 Score=163.36 Aligned_cols=147 Identities=19% Similarity=0.177 Sum_probs=135.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 013800 237 NYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMED 316 (436)
Q Consensus 237 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 316 (436)
.||.++...|++++|++.+++++..+|+++..++.+|.+|+..++ |++|+.+|+++++++|+++.+|..+|
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~-~~~A~~~~~~al~~~p~~~~a~~~lg-------- 72 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKE-YDLAKKYICTYINVQERDPKAHRFLG-------- 72 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH--------
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHH--------
Confidence 478888999999999999999999999999999999999999975 99999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHhCCCCHHHH
Q 013800 317 DGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCY-FERAVQASPADSHVL 395 (436)
Q Consensus 317 ~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~-~~~al~~~p~~~~~~ 395 (436)
.++...|++++|+.+|+++++++|+++.+++++|.++...|+ +++|... ++++++++|+++.++
T Consensus 73 --------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~aa~~~~~~al~l~P~~~~~~ 137 (150)
T 4ga2_A 73 --------------LLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDV-TDGRAKYWVERAAKLFPGSPAVY 137 (150)
T ss_dssp --------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHSTTCHHHH
T ss_pred --------------HHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHhCcCCHHHH
Confidence 889999999999999999999999999999999999999999 8776665 699999999999999
Q ss_pred HHHHHHHHHCCC
Q 013800 396 AAYACFLWETEE 407 (436)
Q Consensus 396 ~~la~~~~~~g~ 407 (436)
..++.++...|+
T Consensus 138 ~l~~~ll~~~G~ 149 (150)
T 4ga2_A 138 KLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHHhCc
Confidence 999999998886
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=6.2e-20 Score=174.22 Aligned_cols=203 Identities=13% Similarity=0.053 Sum_probs=167.6
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPC------HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GES 268 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 268 (436)
+...|.++...|++++|+.+|++++++.+. .+.++.++|.+|..+|++++|+.+|++++++.+.. ..+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 333467888899999999999999998532 25789999999999999999999999999987653 568
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013800 269 WMQYAKLVWEL-HRDQHRALTYFERAALAAPQD------SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG 341 (436)
Q Consensus 269 ~~~la~~~~~~-~~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~ 341 (436)
+.++|.+|... ++ +++|+.+|++++++.|.. ..++.++| .++..+|++++
T Consensus 120 ~~~lg~~~~~~lg~-~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg----------------------~~~~~~g~~~~ 176 (292)
T 1qqe_A 120 KFELGEILENDLHD-YAKAIDCYELAGEWYAQDQSVALSNKCFIKCA----------------------DLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------HHHHHTTCHHH
T ss_pred HHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH----------------------HHHHHhCCHHH
Confidence 89999999885 75 999999999999998754 45677788 88999999999
Q ss_pred HHHHHHHHHHhCCCCHH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHH--HCCC
Q 013800 342 AEEYFSRAILANPGDGE-------IMSQYAKLVWELHHDHDKALCYFERAVQASPADSH-----VLAAYACFLW--ETEE 407 (436)
Q Consensus 342 A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~--~~g~ 407 (436)
|+.+|++++++.|++.. ++.++|.++..+|+ +++|+..|+++++++|.... .+..++..+. ..++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD-AVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC-HHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999987653 68899999999999 99999999999999998664 3445555554 4678
Q ss_pred hHHHHHHHHHHHhhCCCChh
Q 013800 408 DEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 408 ~~~A~~~~~~al~l~p~~~~ 427 (436)
+++|+..|++++.++|....
T Consensus 256 ~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 256 LSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp HHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHhccCCccHHHHHH
Confidence 99999999999888876543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.82 E-value=8e-19 Score=167.03 Aligned_cols=223 Identities=12% Similarity=0.121 Sum_probs=196.5
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFD--DSAEAEEYYKRMIDEYPCHPLLLRNYAQLL----QKK---GDLYRA 251 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~P~~~~~~~~la~~~----~~~---g~~~~A 251 (436)
++......++.+.| .+..+|...+.++...+ ++++++.++.+++..+|++..+|..++.++ ... ++++++
T Consensus 51 ~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 51 RALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 56777888888888 78899999999998888 899999999999999999999999999888 666 788999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 013800 252 EDYYNHATMADPGDGESWMQYAKLVWELHRDQH--RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQ 329 (436)
Q Consensus 252 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 329 (436)
++++.++++.+|++..+|..++.++...+. ++ +++++++++++.+|.+..+|...+
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~-~~~~~EL~~~~~~i~~d~~N~sAW~~R~--------------------- 187 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDL-HNDAKELSFVDKVIDTDLKNNSAWSHRF--------------------- 187 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHCTTCHHHHHHHH---------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcc-cChHHHHHHHHHHHHhCCCCHHHHHHHH---------------------
Confidence 999999999999999999999988888775 77 899999999999999999999888
Q ss_pred HhHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHH
Q 013800 330 VLPIQSKGD------LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS---PADSHVLAAYAC 400 (436)
Q Consensus 330 ~~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~---p~~~~~~~~la~ 400 (436)
.++...++ ++++++++.+++..+|.+..+|+.++.++...|+..++....+.+++.++ |.++.++..++.
T Consensus 188 -~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~ 266 (306)
T 3dra_A 188 -FLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAK 266 (306)
T ss_dssp -HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHH
T ss_pred -HHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 55556665 89999999999999999999999999999999995555667888888776 889999999999
Q ss_pred HHHHCCChHHHHHHHHHHHh-hCCCChh
Q 013800 401 FLWETEEDEDDSKSSDQFQQ-VAPIRQG 427 (436)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al~-l~p~~~~ 427 (436)
++.+.|+.++|+++|+.+.+ .+|....
T Consensus 267 ~~~~~~~~~~A~~~~~~l~~~~Dpir~~ 294 (306)
T 3dra_A 267 IYTQQKKYNESRTVYDLLKSKYNPIRSN 294 (306)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHccCCHHHHHHHHHHHHhccChHHHH
Confidence 99999999999999999996 7887543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.7e-20 Score=194.24 Aligned_cols=180 Identities=12% Similarity=-0.011 Sum_probs=168.3
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013800 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHAT--------MADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAP 298 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p 298 (436)
.+|+++.+++..+ ...|++++|++.|++++ +.+|++..+++.+|.++...++ +++|+..|+++++++|
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGD-VAKATRKLDDLAERVG 464 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHC
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCC-HHHHHHHHHHHhccCc
Confidence 4677877777766 78999999999999999 9999999999999999999985 9999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 013800 299 QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKAL 378 (436)
Q Consensus 299 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~ 378 (436)
++..+|+.+| .++...|++++|+..|+++++++|+++.+++++|.++..+|+ +++ +
T Consensus 465 ~~~~a~~~lg----------------------~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~-~~~-~ 520 (681)
T 2pzi_A 465 WRWRLVWYRA----------------------VAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN-TDE-H 520 (681)
T ss_dssp CCHHHHHHHH----------------------HHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC-CCT-T
T ss_pred chHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-hHH-H
Confidence 9999999999 888999999999999999999999999999999999999999 999 9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhh
Q 013800 379 CYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANV 434 (436)
Q Consensus 379 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~-~an~ 434 (436)
..|+++++++|++..+++++|.++..+|++++|++.|+++++++|++..+.. .+.+
T Consensus 521 ~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~ 577 (681)
T 2pzi_A 521 KFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVT 577 (681)
T ss_dssp CHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999877665 4443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=167.03 Aligned_cols=190 Identities=17% Similarity=0.178 Sum_probs=166.2
Q ss_pred hhCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Q 013800 209 PNFDDSAEAEEYYKRMIDE--------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA--------DPGDGESWMQY 272 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 272 (436)
...|++++|+.+|+++++. .|..+.++..+|.++...|++++|+.+|++++++ .|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3447888888888888874 2556789999999999999999999999999988 35567899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHH
Q 013800 273 AKLVWELHRDQHRALTYFERAALA--------APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEE 344 (436)
Q Consensus 273 a~~~~~~~~d~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~ 344 (436)
|.++...++ +++|+.+|++++.+ +|....++..+| .++...|++++|+.
T Consensus 92 ~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la----------------------~~~~~~g~~~~A~~ 148 (283)
T 3edt_B 92 AVLYGKRGK-YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLA----------------------LLCQNQGKAEEVEY 148 (283)
T ss_dssp HHHHHTTTC-HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----------------------HHHHTTTCHHHHHH
T ss_pred HHHHHHhcc-HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH----------------------HHHHHcCCHHHHHH
Confidence 999998875 99999999999998 466678888899 88889999999999
Q ss_pred HHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----------------------------
Q 013800 345 YFSRAILA--------NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS---------------------------- 388 (436)
Q Consensus 345 ~~~~al~~--------~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~---------------------------- 388 (436)
+|++++++ .|....++..+|.++..+|+ +++|+.+|++++++.
T Consensus 149 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (283)
T 3edt_B 149 YYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK-YQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK 227 (283)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc
Confidence 99999998 67778899999999999999 999999999999862
Q ss_pred ---------------------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 389 ---------------------PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 389 ---------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
|....++..+|.++..+|++++|+.+|++++++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 228 RRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 3445788999999999999999999999999763
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-17 Score=155.13 Aligned_cols=186 Identities=16% Similarity=0.160 Sum_probs=170.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHH
Q 013800 228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE----LHRDQHRALTYFERAALAAPQDSNI 303 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~d~~~A~~~~~~al~~~p~~~~~ 303 (436)
+|.++.+++.+|.++...|++++|+.+|+++++ |+++.+++.+|.++.. .+ ++++|+.+|+++++.+ ++.+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~~--~~~a 76 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEK-NLKKAASFYAKACDLN--YSNG 76 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT--CHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCC-CHHHHHHHHHHHHHCC--CHHH
Confidence 578899999999999999999999999999999 8889999999999888 76 5999999999999985 8999
Q ss_pred HHHHHHHHHH----ccCchHHHHHHHHHHHH----------hHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 304 LAAYACFLWE----MEDDGEDDKAQEEHIQV----------LPIQS----KGDLEGAEEYFSRAILANPGDGEIMSQYAK 365 (436)
Q Consensus 304 ~~~la~~~~~----~g~~~~A~~~~~~~~~~----------~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 365 (436)
++.+|.++.. .+++++|+..+++++.. .++.. .+++++|+.+|+++++.. ++.+++++|.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~ 154 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHH
Confidence 9999999999 99999999999988765 77788 999999999999999976 6899999999
Q ss_pred HHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCC
Q 013800 366 LVWE----LHHDHDKALCYFERAVQASPADSHVLAAYACFLWE----TEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 366 ~~~~----~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~p 423 (436)
++.. .++ +++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+|+++++..|
T Consensus 155 ~~~~~~~~~~~-~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 155 LYDAGRGTPKD-LKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HHHHTSSSCCC-HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCCCCC-HHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 9998 888 999999999999874 57999999999999 9999999999999999866
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-18 Score=155.60 Aligned_cols=189 Identities=11% Similarity=0.006 Sum_probs=141.4
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE---SWMQ 271 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 271 (436)
+..+..+|..++..|++++|+..|+++++..|.++ .+++.+|.++...|++++|+..|+++++.+|+++. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34566777777777777777777777777776653 56777777777777777777777777777776643 5666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHH
Q 013800 272 YAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 272 la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 351 (436)
+|.++...+.. ....+..++ ..+...|++++|+..|+++++
T Consensus 84 ~g~~~~~~~~~-----------------~~~~~~~~~----------------------~~~~~~~~~~~A~~~~~~~l~ 124 (225)
T 2yhc_A 84 RGLTNMALDDS-----------------ALQGFFGVD----------------------RSDRDPQQARAAFSDFSKLVR 124 (225)
T ss_dssp HHHHHHHHHC-----------------------------------------------------CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhh-----------------hhhhhhccc----------------------hhhcCcHHHHHHHHHHHHHHH
Confidence 77666655421 011122333 556678999999999999999
Q ss_pred hCCCCHHHH-----------------HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHH
Q 013800 352 ANPGDGEIM-----------------SQYAKLVWELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWETEEDEDD 411 (436)
Q Consensus 352 ~~p~~~~~~-----------------~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A 411 (436)
..|++..++ ..+|.++...|+ +++|+..|+++++..|+++ .++..+|.++.++|++++|
T Consensus 125 ~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 125 GYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA-WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp TCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 999987554 578899999999 9999999999999999986 6899999999999999999
Q ss_pred HHHHHHHHhhCCCCh
Q 013800 412 SKSSDQFQQVAPIRQ 426 (436)
Q Consensus 412 ~~~~~~al~l~p~~~ 426 (436)
++.++++....|...
T Consensus 204 ~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 204 EKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHCCSCCC
T ss_pred HHHHHHHHhhCCCch
Confidence 999999999887743
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-18 Score=155.68 Aligned_cols=193 Identities=9% Similarity=-0.017 Sum_probs=132.0
Q ss_pred cCCCChHHHHHhhcCCCCCCC--hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHH
Q 013800 177 ERPVSPPMYLAMGLGISVPGF--DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPL---LLRNYAQLLQKKGDLYRA 251 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~---~~~~la~~~~~~g~~~~A 251 (436)
.+.+.|..++...+...+... ..++..+|.++...|++++|+..|+++++.+|++.. +++.+|.++...+..
T Consensus 18 g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~--- 94 (225)
T 2yhc_A 18 GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS--- 94 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh---
Confidence 467788999999988777321 378999999999999999999999999999998864 789999999874421
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 013800 252 EDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331 (436)
Q Consensus 252 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 331 (436)
....+..++.++...+ ++++|+..|+++++..|++..++..+..+....+...... .....
T Consensus 95 -------------~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~-----~~~a~ 155 (225)
T 2yhc_A 95 -------------ALQGFFGVDRSDRDPQ-QARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE-----YSVAE 155 (225)
T ss_dssp --------------------------CCH-HHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHH-----HHHHH
T ss_pred -------------hhhhhhccchhhcCcH-HHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 0111223333333333 2555555555555555555433322111110000000000 00007
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 332 PIQSKGDLEGAEEYFSRAILANPGDG---EIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
++...|++++|+..|+++++..|+++ +++..+|.++..+|+ +++|+..++++....|++.
T Consensus 156 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~-~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 156 YYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM-NAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHCCSCCC
T ss_pred HHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhhCCCch
Confidence 88899999999999999999999986 689999999999999 9999999999999888753
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=4.4e-18 Score=174.84 Aligned_cols=218 Identities=16% Similarity=0.114 Sum_probs=193.3
Q ss_pred HHHHHhhcCCCCCCChhhhhhHhhhhhh-------CCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCC
Q 013800 183 PMYLAMGLGISVPGFDDAGEVVDLIMPN-------FDDSA-------EAEEYYKRMID-EYPCHPLLLRNYAQLLQKKGD 247 (436)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~-------~g~~~-------~A~~~~~~al~-~~P~~~~~~~~la~~~~~~g~ 247 (436)
...|.+++...+ ..+..|..+|.++.. .|+++ +|+..|+++++ ..|++..+|..+|.++...|+
T Consensus 258 ~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~ 336 (530)
T 2ooe_A 258 MFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 336 (530)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC
Confidence 457888888888 788999999998875 78887 89999999997 799999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHH
Q 013800 248 LYRAEDYYNHATMADPGDG-ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE 326 (436)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 326 (436)
+++|+..|++++++.|.++ .+|..++.++...++ +++|+.+|+++++..|.....+...+.
T Consensus 337 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~Al~~~~~~~~~~~~~a~----------------- 398 (530)
T 2ooe_A 337 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAREDARTRHHVYVTAAL----------------- 398 (530)
T ss_dssp HHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTCTTCCTHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC-HHHHHHHHHHHHhccCCchHHHHHHHH-----------------
Confidence 9999999999999999985 689999998888876 999999999999998887777665552
Q ss_pred HHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHH
Q 013800 327 HIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS----HVLAAYACFL 402 (436)
Q Consensus 327 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~----~~~~~la~~~ 402 (436)
..+...|++++|..+|+++++.+|+++.+|..++.++...|+ +++|..+|++++...|.++ .+|..+..+.
T Consensus 399 ----~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~-~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e 473 (530)
T 2ooe_A 399 ----MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE-DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 473 (530)
T ss_dssp ----HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTC-HHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHH
T ss_pred ----HHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCC-HhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 223468999999999999999999999999999999999999 9999999999999877654 4888899999
Q ss_pred HHCCChHHHHHHHHHHHhhCCC
Q 013800 403 WETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 403 ~~~g~~~~A~~~~~~al~l~p~ 424 (436)
...|+.+.+..+++++++..|.
T Consensus 474 ~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 474 SNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHcCCHHHHHHHHHHHHHHCch
Confidence 9999999999999999999873
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-19 Score=154.60 Aligned_cols=162 Identities=12% Similarity=0.084 Sum_probs=81.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 314 (436)
++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|+ +++|+..|++++..+| ++..+..++.+.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~-~~~A~~~~~~a~~~~p-~~~~~~~~~~~~--- 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQ-FELAQELLATIPLEYQ-DNSYKSLIAKLE--- 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTC-HHHHHHHHTTCCGGGC-CHHHHHHHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHhhhccC-ChHHHHHHHHHH---
Confidence 44444444445555555555555555555555555555544444432 5555555555554444 443333322110
Q ss_pred cCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--H
Q 013800 315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD--S 392 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~--~ 392 (436)
+...+...+|+..|+++++.+|+++.+++.+|.++...|+ +++|+..|+++++.+|+. .
T Consensus 84 ------------------~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~ 144 (176)
T 2r5s_A 84 ------------------LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR-DEEALELLWNILKVNLGAQDG 144 (176)
T ss_dssp ------------------HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCTTTTTT
T ss_pred ------------------HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCcccChH
Confidence 0011122234555566666666666666666666666655 666666666666655543 3
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013800 393 HVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 393 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (436)
.++..++.++..+|+.++|+..|++++.
T Consensus 145 ~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 145 EVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 4555666666666666666666655553
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-18 Score=162.55 Aligned_cols=169 Identities=12% Similarity=0.093 Sum_probs=137.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY 307 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l 307 (436)
-|++...++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|+ +++|+..|++++..+|+....+...
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~-~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNR-SEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC-HHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCC-HHHHHHHHHhCchhhcchHHHHHHH
Confidence 377778888888888888888888888888888888888888888888887764 8888888888888888655555555
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
+ ..+...++.++|+..|++++..+|+++.+++++|.++...|+ +++|+..|++++..
T Consensus 192 ~----------------------~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~-~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 192 Q----------------------IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR-NEEALELLFGHLRX 248 (287)
T ss_dssp H----------------------HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred H----------------------HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc-HHHHHHHHHHHHhc
Confidence 5 556667777888888888888888888888888888888888 88888888888888
Q ss_pred CCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013800 388 SPAD--SHVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 388 ~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (436)
+|++ ..++..++.++..+|+.++|+..|++++.
T Consensus 249 ~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 249 DLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 8887 77888888888888888888888888775
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.1e-19 Score=154.73 Aligned_cols=164 Identities=16% Similarity=0.136 Sum_probs=149.1
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
..+..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++...| ++..+..++.+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELH 85 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999 88877776655443
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 013800 279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD-- 356 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-- 356 (436)
...+..+|+..|+++++++|+++.+++.+| .++...|++++|+..|+++++.+|+.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la----------------------~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 143 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELA----------------------VQYNQVGRDEEALELLWNILKVNLGAQD 143 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHTTCTTTTT
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHcccHHHHHHHHHHHHHhCcccCh
Confidence 322245689999999999999999999999 89999999999999999999999875
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 013800 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQ 386 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~~A~~~~~~al~ 386 (436)
+.++..+|.++..+|+ .++|+..|++++.
T Consensus 144 ~~a~~~l~~~~~~~g~-~~~A~~~y~~al~ 172 (176)
T 2r5s_A 144 GEVKKTFMDILSALGQ-GNAIASKYRRQLY 172 (176)
T ss_dssp THHHHHHHHHHHHHCS-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCcHHHHHHHHHH
Confidence 6699999999999999 9999999999875
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=142.94 Aligned_cols=117 Identities=19% Similarity=0.126 Sum_probs=59.5
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
++|+.+..+.++|..++..|+|++|+..|+++++++|.++.+|..+|.++..+++ +++|+..|+++++++|++..+|+.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME-FQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc-HHHHHHHHHHHHHhhhhhhHHHHH
Confidence 4444455555555555555555555555555555555555555555555544442 555555555555555555555555
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL 366 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (436)
+| .++..+|++++|+..|+++++++|++.+++..++.+
T Consensus 87 lg----------------------~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 87 KA----------------------ACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HH----------------------HHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 55 444444555555555555555555555554444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.8e-18 Score=174.96 Aligned_cols=165 Identities=18% Similarity=0.176 Sum_probs=140.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013800 211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYF 290 (436)
Q Consensus 211 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~ 290 (436)
.|++++|+.+|+++++.+|++..++..+|.++...|++++|++.|+++++++|++..++..+|.++...++ +++|+.+|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQR-HAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999875 99999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013800 291 ERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL 370 (436)
Q Consensus 291 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (436)
+++++++|++..++.++| .++...|++++|+..|+++++++|++..++.++|.++..+
T Consensus 81 ~~al~~~p~~~~~~~~la----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLG----------------------HALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999 8889999999999999999999999999999999999999
Q ss_pred ---cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 371 ---HHDHDKALCYFERAVQASPADSHVLAAYA 399 (436)
Q Consensus 371 ---g~d~~~A~~~~~~al~~~p~~~~~~~~la 399 (436)
|+ +++|+..|+++++.+|.+...+..++
T Consensus 139 ~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 139 CDWRA-LDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp TCCTT-HHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred hcccc-HHHHHHHHHHHHhcCCcccChHHHhC
Confidence 99 99999999999999999887777766
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=164.02 Aligned_cols=178 Identities=13% Similarity=0.057 Sum_probs=151.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHH
Q 013800 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG------DGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 213 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~d~~~A 286 (436)
++++|+.+|+++ |.+|...|++++|+.+|.+++++.+. ...++.++|.++...++ +++|
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN-SVNA 96 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCC-HHHH
Confidence 599999999988 66788999999999999999998532 26789999999999875 9999
Q ss_pred HHHHHHHHHhCCCC------HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc-CCHHHHHHHHHHHHHhCCCC---
Q 013800 287 LTYFERAALAAPQD------SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK-GDLEGAEEYFSRAILANPGD--- 356 (436)
Q Consensus 287 ~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~p~~--- 356 (436)
+.+|++++++.|.. ..++.++| .+|... |++++|+.+|++++++.|.+
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg----------------------~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELG----------------------EILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------HHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------HHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 99999999998653 45677777 888886 99999999999999998754
Q ss_pred ---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013800 357 ---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSH-------VLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 357 ---~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 426 (436)
..++.++|.++..+|+ +++|+.+|++++++.|++.. ++.++|.++..+|++++|+.+|++++.+.|.+.
T Consensus 155 ~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQ-YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred HHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 5689999999999999 99999999999999988653 678999999999999999999999999999887
Q ss_pred hH
Q 013800 427 GA 428 (436)
Q Consensus 427 ~a 428 (436)
..
T Consensus 234 ~~ 235 (292)
T 1qqe_A 234 DS 235 (292)
T ss_dssp --
T ss_pred Cc
Confidence 64
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=171.49 Aligned_cols=222 Identities=12% Similarity=0.033 Sum_probs=160.4
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDE---YPC---HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-------DGE 267 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~ 267 (436)
+...|.++...|++++|+.+|+++++. .++ .+.++..+|.++...|++++|+.++++++++.+. ...
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 344788888888888888888888876 222 4477888888888888888888888888887433 245
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCchHHHHHHHHHHHH-----------
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQD------SNILAAYACFLWEMEDDGEDDKAQEEHIQV----------- 330 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------- 330 (436)
++..+|.++...++ +++|+.+|++++++.+.. ..++.++|.++...|++++|...+++++..
T Consensus 186 ~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 186 CHSLFATNFLDLKQ-YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 77888888888874 888888888888875432 246778887777777777777777666552
Q ss_pred -------hHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHhCCCCHHHH
Q 013800 331 -------LPIQSKGDLEGAEEYFSRAILAN-----PGDGEIMSQYAKLVWELHHDH---DKALCYFERAVQASPADSHVL 395 (436)
Q Consensus 331 -------~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~d~---~~A~~~~~~al~~~p~~~~~~ 395 (436)
.++..+|++++|+.++++++++. |.....+..+|.++...|+ + .+|+..+++. ...|....++
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~al~~~~~~-~~~~~~~~~~ 342 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD-EEAIQGFFDFLESK-MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC-HHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 67777888888888888887763 3333345667777776665 3 3344444433 1122334678
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 396 AAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 396 ~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
..+|.++..+|++++|..+|++++++....
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999886443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-18 Score=141.25 Aligned_cols=122 Identities=12% Similarity=0.086 Sum_probs=109.6
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc
Q 013800 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK 336 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 336 (436)
++..++|+.+..+..+|..++..|+ |++|+.+|+++++++|.++.+|.++| .++..+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~----------------------~~~~~~ 60 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGD-YPTAMRHYNEAVKRDPENAILYSNRA----------------------ACLTKL 60 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHT
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHh----------------------hHHHhh
Confidence 3445788889999999999998875 99999999999999999999999999 888889
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 337 GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFL 402 (436)
Q Consensus 337 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 402 (436)
|++++|+..|+++++++|+++.+|+++|.++..+|+ +++|+..|+++++++|++..++..++.++
T Consensus 61 ~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 61 MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMRE-WSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999 99999999999999999999998888764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-16 Score=151.91 Aligned_cols=238 Identities=11% Similarity=0.064 Sum_probs=197.9
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--H
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDD----------SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGD--L 248 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~--~ 248 (436)
++..+....+.+.| .+..+|...+.++...+. +++++.++..++..+|++..+|...+.++...++ +
T Consensus 48 eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 48 SVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 57788999999999 899999999998887765 6899999999999999999999999999999994 9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHH
Q 013800 249 YRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI 328 (436)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 328 (436)
+++++++.++++.+|.+..+|...+.++...+..++++++++.++++.+|.+..+|..++.++........+..
T Consensus 127 ~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~------ 200 (331)
T 3dss_A 127 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP------ 200 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC----------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccc------
Confidence 99999999999999999999999999988887536999999999999999999999999966544321100000
Q ss_pred HHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 329 QVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL-----------HHDHDKALCYFERAVQASPADSHVLAA 397 (436)
Q Consensus 329 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~d~~~A~~~~~~al~~~p~~~~~~~~ 397 (436)
..-...+.++++++++.+++..+|+|..+|+.+..++... +. ++++++.+.+++++.|++...+..
T Consensus 201 --~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~-l~~el~~~~elle~~pd~~w~l~~ 277 (331)
T 3dss_A 201 --QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTV-LQSELESCKELQELEPENKWCLLT 277 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred --ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHH-HHHHHHHHHHHHhhCcccchHHHH
Confidence 0000015689999999999999999999998777777655 45 899999999999999999766555
Q ss_pred HHHHHH---HCCChHHHHHHHHHHHhhCCCChhH
Q 013800 398 YACFLW---ETEEDEDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 398 la~~~~---~~g~~~~A~~~~~~al~l~p~~~~a 428 (436)
++.+.. ..|..++....+.+..+++|.-.+-
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~ 311 (331)
T 3dss_A 278 IILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 311 (331)
T ss_dssp HHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHHhCcchhhH
Confidence 554432 3577889999999999999986654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=158.39 Aligned_cols=167 Identities=11% Similarity=0.064 Sum_probs=156.0
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
.....+..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+....+...+..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 56678888999999999999999999999999999999999999999999999999999999999999777666677766
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
+...++ .++|+..|+++++.+|++..+++.+| .++...|++++|+..|+++++.+|+
T Consensus 195 l~~~~~-~~~a~~~l~~al~~~P~~~~~~~~la----------------------~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 195 LLXQAA-DTPEIQQLQQQVAENPEDAALATQLA----------------------LQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHHHT-SCHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhcc-cCccHHHHHHHHhcCCccHHHHHHHH----------------------HHHHHcccHHHHHHHHHHHHhcccc
Confidence 777765 89999999999999999999999999 8899999999999999999999999
Q ss_pred C--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 013800 356 D--GEIMSQYAKLVWELHHDHDKALCYFERAVQ 386 (436)
Q Consensus 356 ~--~~~~~~la~~~~~~g~d~~~A~~~~~~al~ 386 (436)
+ ..++.+++.++..+|+ .++|...|++++.
T Consensus 252 ~~~~~a~~~l~~~~~~~g~-~~~a~~~~r~al~ 283 (287)
T 3qou_A 252 AADGQTRXTFQEILAALGT-GDALASXYRRQLY 283 (287)
T ss_dssp GGGGHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHcCC-CCcHHHHHHHHHH
Confidence 8 8999999999999999 9999999999875
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-16 Score=160.74 Aligned_cols=229 Identities=10% Similarity=0.075 Sum_probs=168.7
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhh----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPN----FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYRAE 252 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~ 252 (436)
.+..++.++... ++..++..+|.++.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+
T Consensus 169 ~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 169 MAREWYSKAAEQ---GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 344444444332 345666777777766 67777777777777664 356677777777775 67777777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----cCchHHHHH
Q 013800 253 DYYNHATMADPGDGESWMQYAKLVWE----LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM-----EDDGEDDKA 323 (436)
Q Consensus 253 ~~~~~al~~~p~~~~~~~~la~~~~~----~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~ 323 (436)
.+|+++++. .++.+++.+|.++.. .+ ++++|+.+|+++++. .++.+++.+|.++... +++++|..+
T Consensus 244 ~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~-d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~ 318 (490)
T 2xm6_A 244 VLFSQSAEQ--GNSIAQFRLGYILEQGLAGAK-EPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISW 318 (490)
T ss_dssp HHHHHHHTT--TCHHHHHHHHHHHHHTTTSSC-CHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred HHHHHHHHC--CCHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 777777654 456777777777665 43 588888888887654 5677888888888777 778888888
Q ss_pred HHHHHHH----------hHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHH
Q 013800 324 QEEHIQV----------LPIQSKG---DLEGAEEYFSRAILANPGDGEIMSQYAKLVWE----LHHDHDKALCYFERAVQ 386 (436)
Q Consensus 324 ~~~~~~~----------~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~d~~~A~~~~~~al~ 386 (436)
++++.+. .++...| ++++|+.+|+++++. .++.+++++|.++.. .++ +++|+.+|+++++
T Consensus 319 ~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~-~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 319 YTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKD-EQQAAIWMRKAAE 395 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHh
Confidence 8776654 5555545 788888888888876 568888899988888 677 8999999999887
Q ss_pred hCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCC
Q 013800 387 ASPADSHVLAAYACFLWE----TEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 387 ~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~p~ 424 (436)
.. ++.++.++|.+|.. .+++++|+..|+++++..|+
T Consensus 396 ~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 396 QG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp TT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 54 57888899999888 88999999999999988754
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-17 Score=170.52 Aligned_cols=160 Identities=14% Similarity=0.033 Sum_probs=136.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHH
Q 013800 245 KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ 324 (436)
Q Consensus 245 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 324 (436)
.|++++|+..|+++++.+|++..++..+|.++...++ +++|+.+|+++++++|++..++..+|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg---------------- 64 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGD-TTAGEMAVQRGLALHPGHPEAVARLG---------------- 64 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHTTSTTCHHHHHHHH----------------
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------
Confidence 4789999999999999999999999999999999975 99999999999999999999999999
Q ss_pred HHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 325 EEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 325 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
.++..+|++++|+.+|+++++++|++..+++++|.++..+|+ +++|+..|+++++++|++..++..++.++..
T Consensus 65 ------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 137 (568)
T 2vsy_A 65 ------RVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQ-AEAAAAAYTRAHQLLPEEPYITAQLLNWRRR 137 (568)
T ss_dssp ------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ------HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred C---CChHHHHHHHHHHHhhCCCChhH
Q 013800 405 T---EEDEDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 405 ~---g~~~~A~~~~~~al~l~p~~~~a 428 (436)
+ |++++|++.|+++++.+|....+
T Consensus 138 ~~~~g~~~~A~~~~~~al~~~p~~~~~ 164 (568)
T 2vsy_A 138 LCDWRALDVLSAQVRAAVAQGVGAVEP 164 (568)
T ss_dssp TTCCTTHHHHHHHHHHHHHHTCCCSCH
T ss_pred hhccccHHHHHHHHHHHHhcCCcccCh
Confidence 9 99999999999999999986543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.76 E-value=8.1e-20 Score=177.16 Aligned_cols=152 Identities=9% Similarity=0.060 Sum_probs=119.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHH
Q 013800 246 GDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---------------SNILAAYACF 310 (436)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---------------~~~~~~la~~ 310 (436)
+++++|+..|++++...|.++.++..+|.+++..++ +++|+.+|+++++++|++ ..++.++|
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla-- 203 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGK-YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA-- 203 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH--
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH--
Confidence 344444545555555555555555555555555443 555555555555555554 67888999
Q ss_pred HHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 311 LWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
.++..+|++++|+.+|+++++++|+++.+++++|.++..+|+ +++|+..|+++++++|+
T Consensus 204 --------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~ 262 (336)
T 1p5q_A 204 --------------------MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND-FELARADFQKVLQLYPN 262 (336)
T ss_dssp --------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSS
T ss_pred --------------------HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCC
Confidence 889999999999999999999999999999999999999999 99999999999999999
Q ss_pred CHHHHHHHHHHHHHCCChHHH-HHHHHHHHhh
Q 013800 391 DSHVLAAYACFLWETEEDEDD-SKSSDQFQQV 421 (436)
Q Consensus 391 ~~~~~~~la~~~~~~g~~~~A-~~~~~~al~l 421 (436)
+..++..++.++..+|++++| ...|++++..
T Consensus 263 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 263 NKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 5567776653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=5e-17 Score=158.75 Aligned_cols=244 Identities=14% Similarity=0.072 Sum_probs=201.7
Q ss_pred CCCChHHHHHhhcCCCCCCCh----hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCC
Q 013800 178 RPVSPPMYLAMGLGISVPGFD----DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP------LLLRNYAQLLQKKGD 247 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~------~~~~~la~~~~~~g~ 247 (436)
+++.+..++..++...+.+.. .++..+|.++...|++++|+..+++++...|... .++..+|.++...|+
T Consensus 29 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~ 108 (373)
T 1hz4_A 29 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 108 (373)
T ss_dssp CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCC
Confidence 444667777777776653332 3678899999999999999999999998765432 447889999999999
Q ss_pred HHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHc
Q 013800 248 LYRAEDYYNHATMAD--------PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ-----DSNILAAYACFLWEM 314 (436)
Q Consensus 248 ~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~ 314 (436)
+++|+.++++++++. |....++..+|.+++..|+ +++|+.++++++.+.+. ...++..++.++...
T Consensus 109 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 187 (373)
T 1hz4_A 109 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR-LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 187 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc
Confidence 999999999999874 3345678889999998875 99999999999999875 346788999999999
Q ss_pred cCchHHHHHHHHHHHH-------------------hHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhc
Q 013800 315 EDDGEDDKAQEEHIQV-------------------LPIQSKGDLEGAEEYFSRAILANPGD----GEIMSQYAKLVWELH 371 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~-------------------~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g 371 (436)
|++++|...+++.+.. .++...|++++|..++++++...+.. ...+..++.++...|
T Consensus 188 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 267 (373)
T 1hz4_A 188 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG 267 (373)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcC
Confidence 9999999999876543 23668999999999999998877653 346788999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013800 372 HDHDKALCYFERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 372 ~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 423 (436)
+ +++|+..+++++...+.. ..++..++.++...|++++|...+++++.+.+
T Consensus 268 ~-~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 268 E-FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp C-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 9 999999999998875431 25788899999999999999999999998753
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=8.5e-17 Score=165.24 Aligned_cols=188 Identities=15% Similarity=0.151 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHH
Q 013800 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-------KGDLY-------RAEDYYNHATM-ADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 279 (436)
.+++..|++++..+|.++.+|+.+|.++.. .|+++ +|+..|+++++ +.|++..+|..+|.++...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 478899999999999999999999999986 79987 99999999997 8999999999999998888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 280 HRDQHRALTYFERAALAAPQDS-NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
++ +++|..+|++++++.|.++ .+|..++ .++.+.|++++|...|+++++..|....
T Consensus 335 g~-~~~A~~~~~~al~~~p~~~~~~~~~~~----------------------~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 391 (530)
T 2ooe_A 335 MK-YEKVHSIYNRLLAIEDIDPTLVYIQYM----------------------KFARRAEGIKSGRMIFKKAREDARTRHH 391 (530)
T ss_dssp TC-HHHHHHHHHHHHHSSSSCHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHTCTTCCTH
T ss_pred CC-HHHHHHHHHHHhCccccCchHHHHHHH----------------------HHHHHhcCHHHHHHHHHHHHhccCCchH
Confidence 75 9999999999999999985 6899999 7777789999999999999999998888
Q ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013800 359 IMSQYAKLV-WELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 359 ~~~~la~~~-~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 426 (436)
.+...+.+. ...|+ +++|...|+++++..|+++.+|..++.++...|+.++|..+|++++...|...
T Consensus 392 ~~~~~a~~~~~~~~~-~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 392 VYVTAALMEYYCSKD-KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred HHHHHHHHHHHHcCC-hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 887777664 35788 99999999999999999999999999999999999999999999999876543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.3e-16 Score=155.90 Aligned_cols=212 Identities=11% Similarity=0.136 Sum_probs=107.9
Q ss_pred hhhhhhHhhhhhh----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 198 DDAGEVVDLIMPN----FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYRAEDYYNHATMADPGDGESW 269 (436)
Q Consensus 198 ~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 269 (436)
+.++..+|.++.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.++
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~ 186 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSC 186 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence 3444445554444 44555555555554443 244455555555544 44555555555555443 344555
Q ss_pred HHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCchHHHHHHHHHHHH----------h
Q 013800 270 MQYAKLVWE----LHRDQHRALTYFERAALAAPQDSNILAAYACFLWE----MEDDGEDDKAQEEHIQV----------L 331 (436)
Q Consensus 270 ~~la~~~~~----~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~----------~ 331 (436)
+.+|.+|.. .+ ++++|+.+|+++++. .++.+++.+|.++.. .+++++|..++++.... .
T Consensus 187 ~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVER-NDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCc-CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555544443 22 355555555555443 244455555555544 44555555555443332 3
Q ss_pred HHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 332 PIQS----KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL-----HHDHDKALCYFERAVQASPADSHVLAAYACFL 402 (436)
Q Consensus 332 ~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 402 (436)
++.. .+++++|+.+|+++++. .++.+++.+|.++... ++ +++|+.+|+++++. .++.++..+|.++
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~-~~~A~~~~~~a~~~--~~~~a~~~lg~~y 338 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKN-REQAISWYTKSAEQ--GDATAQANLGAIY 338 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCC-HHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCC-HHHHHHHHHHHHhc--CCHHHHHHHHHHH
Confidence 3334 45555566655555443 3455555666555554 44 66666666665554 2345556666666
Q ss_pred HHCC---ChHHHHHHHHHHHhh
Q 013800 403 WETE---EDEDDSKSSDQFQQV 421 (436)
Q Consensus 403 ~~~g---~~~~A~~~~~~al~l 421 (436)
...| ++++|+++|+++.+.
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHT
T ss_pred HhCCCcccHHHHHHHHHHHHHC
Confidence 5544 555666666666554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-16 Score=150.27 Aligned_cols=194 Identities=13% Similarity=0.091 Sum_probs=176.0
Q ss_pred hCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 210 NFDDS-AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGD----------LYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 210 ~~g~~-~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
+.|++ ++|+.++.+++..+|++..+|...+.++...+. +++++.++.+++..+|++..+|...+.++..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 33555 489999999999999999999999999988776 7899999999999999999999999999988
Q ss_pred HcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCC-HHHHHHHHHHHHHhCCCC
Q 013800 279 LHR-DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGD-LEGAEEYFSRAILANPGD 356 (436)
Q Consensus 279 ~~~-d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~ 356 (436)
.+. ++++++.++.++++.+|.+..+|...+ .+....|. ++++++++.++++.+|.|
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~----------------------~vl~~l~~~~~eel~~~~~~I~~~p~N 178 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERNFHCWDYRR----------------------FVAAQAAVAPAEELAFTDSLITRNFSN 178 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCCHHHHHHHHHHHHHHCSCC
T ss_pred cCcccHHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHhCcCHHHHHHHHHHHHHHCCCC
Confidence 874 489999999999999999999999999 77777787 699999999999999999
Q ss_pred HHHHHHHHHHHHHh--------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-----------CChHHH
Q 013800 357 GEIMSQYAKLVWEL--------------HHDHDKALCYFERAVQASPADSHVLAAYACFLWET-----------EEDEDD 411 (436)
Q Consensus 357 ~~~~~~la~~~~~~--------------g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A 411 (436)
..+|.+++.++... +. ++++++++.+++..+|++..+|..+..++... +..+++
T Consensus 179 ~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~-~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~e 257 (331)
T 3dss_A 179 YSSWHYRSCLLPQLHPQPDSGPQGRLPENV-LLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSE 257 (331)
T ss_dssp HHHHHHHHHHHHHHSCCC------CCCHHH-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccccchHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHH
Confidence 99999999999988 55 89999999999999999999998777776665 457899
Q ss_pred HHHHHHHHhhCCCCh
Q 013800 412 SKSSDQFQQVAPIRQ 426 (436)
Q Consensus 412 ~~~~~~al~l~p~~~ 426 (436)
++.+++++++.|+..
T Consensus 258 l~~~~elle~~pd~~ 272 (331)
T 3dss_A 258 LESCKELQELEPENK 272 (331)
T ss_dssp HHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhhCcccc
Confidence 999999999999873
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-16 Score=149.39 Aligned_cols=189 Identities=13% Similarity=0.130 Sum_probs=171.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHHc--CCH
Q 013800 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG--DLYRAEDYYNHATMADPGDGESWMQYAKLV----WELH--RDQ 283 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~~--~d~ 283 (436)
...++|+.++.++|.++|++..+|...+.++...+ +++++++++.+++..+|++..+|+.++.++ ...+ +++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 34479999999999999999999999999999999 999999999999999999999999999998 5552 469
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHH
Q 013800 284 HRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE--GAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 284 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~ 361 (436)
++++.+++++++.+|.+..+|...+ .++...|.++ ++++++.++++.+|.+..+|.
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~----------------------~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~ 184 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRK----------------------WLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWS 184 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHhcccChHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999999999 7777888888 999999999999999999999
Q ss_pred HHHHHHHHhcCC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH-HHHHHHHHHhhC
Q 013800 362 QYAKLVWELHHD-----HDKALCYFERAVQASPADSHVLAAYACFLWETEEDED-DSKSSDQFQQVA 422 (436)
Q Consensus 362 ~la~~~~~~g~d-----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~l~ 422 (436)
+++.++...++. ++++++++.+++..+|.+..+|..++.++...|+..+ ...+..+++.+.
T Consensus 185 ~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 251 (306)
T 3dra_A 185 HRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE 251 (306)
T ss_dssp HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 999999887642 7899999999999999999999999999999999666 445666666664
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=153.61 Aligned_cols=209 Identities=14% Similarity=0.116 Sum_probs=158.9
Q ss_pred CCCChHHHHHhhcCC-------CCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGI-------SVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEY--------PCHPLLLRNYAQLL 242 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~-------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------P~~~~~~~~la~~~ 242 (436)
++..|..++..++.+ +......++..+|.++...|++++|+.+|+++++.. |....++..+|.++
T Consensus 16 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (283)
T 3edt_B 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLY 95 (283)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 555666666666653 222456789999999999999999999999999873 55668899999999
Q ss_pred HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHH
Q 013800 243 QKKGDLYRAEDYYNHATMA--------DPGDGESWMQYAKLVWELHRDQHRALTYFERAALA--------APQDSNILAA 306 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~--------~p~~~~~~~~ 306 (436)
...|++++|+.+|++++.+ +|....++..+|.++...++ +++|+.+|++++++ .|....++..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 96 GKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK-AEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 9999999999999999998 46678899999999999875 99999999999999 6777888999
Q ss_pred HHHHHHHccCchHHHHHHHHHHHH--------------h-------HHHH------cCCHHHHHHHHHHHHHhCCCCHHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQV--------------L-------PIQS------KGDLEGAEEYFSRAILANPGDGEI 359 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~--------------~-------~~~~------~g~~~~A~~~~~~al~~~p~~~~~ 359 (436)
+|.++...|++++|...+++++.. . .+.. ...+.++...++......|....+
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTT 254 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 997777766666666666665543 0 0001 111223333333322234566788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013800 360 MSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 360 ~~~la~~~~~~g~d~~~A~~~~~~al~~~ 388 (436)
+..+|.++..+|+ +++|+.+|++++++.
T Consensus 255 ~~~la~~~~~~g~-~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 255 LRSLGALYRRQGK-LEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHhh
Confidence 9999999999999 999999999998753
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-17 Score=160.51 Aligned_cols=221 Identities=14% Similarity=-0.001 Sum_probs=160.5
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYP------CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-------DG 266 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~ 266 (436)
.+...|..+...|++++|+.+|++++...+ ..+.++..+|.++...|++++|+.++++++++.+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 567789999999999999999999998632 24578999999999999999999999999987543 25
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------
Q 013800 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQ------DSNILAAYACFLWEMEDDGEDDKAQEEHIQV---------- 330 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------- 330 (436)
.++..+|.++...++ +++|+.+|++++++.+. ...++.++|.++...|++++|...+.+++..
T Consensus 183 ~~~~~lg~~y~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 183 QSLFVIAGNYDDFKH-YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 578899999999875 99999999999987432 3457788997777777777777666666552
Q ss_pred -------hHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHH
Q 013800 331 -------LPIQSKGDLEGAEEYFSRAILANP-----GDGEIMSQYAKLVWELHH--DHDKALCYFERAVQASPADSHVLA 396 (436)
Q Consensus 331 -------~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~--d~~~A~~~~~~al~~~p~~~~~~~ 396 (436)
.++..+|++++|+.++++++++.+ .....+..++.++...++ .+.+|+..+++. ...|....++.
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~ 340 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHH
Confidence 566666777777777777776632 223334444444444333 033333333331 11122235677
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 397 AYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 397 ~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
.+|.++...|++++|+.+|++++++.
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999998764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-18 Score=162.36 Aligned_cols=211 Identities=14% Similarity=0.114 Sum_probs=167.2
Q ss_pred CCCChHHHHHhhcCC-------CCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGI-------SVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE--------YPCHPLLLRNYAQLL 242 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~-------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~ 242 (436)
+++.+..++..++.+ .......++..+|.++...|++++|+.+|++++.. .|....++..+|.++
T Consensus 42 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (311)
T 3nf1_A 42 RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLY 121 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 344666677777664 22245678999999999999999999999999987 355568899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHH
Q 013800 243 QKKGDLYRAEDYYNHATMAD--------PGDGESWMQYAKLVWELHRDQHRALTYFERAALA--------APQDSNILAA 306 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~--------~p~~~~~~~~ 306 (436)
...|++++|+.+|++++++. |....++..+|.++...++ +++|+.+|++++++ .|....++..
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 200 (311)
T 3nf1_A 122 GKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK-YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNN 200 (311)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999884 5567889999999998875 99999999999998 6777888999
Q ss_pred HHHHHHHccCchHHHHHHHHHHHH---------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQV---------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEI 359 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~---------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 359 (436)
+|.++...|++++|...+++++.. ..+...+.+.+|+..+++++...|..+.+
T Consensus 201 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 280 (311)
T 3nf1_A 201 LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTT 280 (311)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHH
Confidence 998888888888888888877653 22334455666677777777788888999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 360 MSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 360 ~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
+..+|.++...|+ +++|+.+|++++++.|.
T Consensus 281 ~~~la~~~~~~g~-~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 281 LKNLGALYRRQGK-FEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHTC-HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHHHHhhc
Confidence 9999999999999 99999999999998875
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.73 E-value=8e-18 Score=143.67 Aligned_cols=112 Identities=16% Similarity=0.103 Sum_probs=61.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHH
Q 013800 255 YNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ 334 (436)
Q Consensus 255 ~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 334 (436)
+++++.++|+++.+++.+|.+++..++ +++|+.+|++++.++|+++.+|+++| .++.
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~~P~~~~~~~~lg----------------------~~~~ 81 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGR-IEEAEVFFRFLCIYDFYNVDYIMGLA----------------------AIYQ 81 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHH
Confidence 444444555555555555555555543 55555555555555555555555555 5555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
.+|++++|+.+|+++++++|+++.+|+++|.++..+|+ +++|+..|++++++.|+
T Consensus 82 ~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~-~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 82 IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA-PLKAKECFELVIQHSND 136 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCC
T ss_pred HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCC
Confidence 55555555555555555555555555555555555555 55555555555555554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=142.93 Aligned_cols=121 Identities=11% Similarity=0.027 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ 362 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (436)
+-.+-..+++++.++|++..+++.+| .++...|++++|+.+|++++.++|+++.+|++
T Consensus 18 ~~~~~~~l~~al~l~p~~~~~~~~lg----------------------~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~ 75 (151)
T 3gyz_A 18 AINSGATLKDINAIPDDMMDDIYSYA----------------------YDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMG 75 (151)
T ss_dssp HHHTSCCTGGGCCSCHHHHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHCCCCHHHHhCCCHHHHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 33444578889999999999999999 88999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013800 363 YAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 363 la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 426 (436)
+|.++..+|+ +++|+..|+++++++|+++.+++++|.++..+|++++|+..|++++++.|+..
T Consensus 76 lg~~~~~~g~-~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 76 LAAIYQIKEQ-FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcc-HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999 99999999999999999999999999999999999999999999999998865
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=162.17 Aligned_cols=154 Identities=13% Similarity=0.081 Sum_probs=144.8
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q 013800 210 NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---------------GESWMQYAK 274 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~ 274 (436)
.++++++|+..|++++..+|+++.++..+|.+++..|++++|+..|++++.++|.+ ..+|.++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999999999999999999998 699999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC
Q 013800 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP 354 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 354 (436)
++...++ +++|+.+|+++++++|++..+++.+| .++..+|++++|+.+|+++++++|
T Consensus 205 ~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~lg----------------------~~~~~~g~~~~A~~~~~~al~l~P 261 (336)
T 1p5q_A 205 CHLKLQA-FSAAIESCNKALELDSNNEKGLSRRG----------------------EAHLAVNDFELARADFQKVLQLYP 261 (336)
T ss_dssp HHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHHHHHCC
Confidence 9999985 99999999999999999999999999 889999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHh
Q 013800 355 GDGEIMSQYAKLVWELHHDHDKA-LCYFERAVQA 387 (436)
Q Consensus 355 ~~~~~~~~la~~~~~~g~d~~~A-~~~~~~al~~ 387 (436)
++..++..++.++..+|+ +++| ...|++++..
T Consensus 262 ~~~~a~~~l~~~~~~~~~-~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 262 NNKAAKTQLAVCQQRIRR-QLAREKKLYANMFER 294 (336)
T ss_dssp SCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999 9988 5577777654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.9e-17 Score=154.26 Aligned_cols=163 Identities=16% Similarity=0.177 Sum_probs=93.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHH
Q 013800 239 AQLLQKKGDLYRAEDYYNHATMADPGD------GESWMQYAKLVWELHRDQHRALTYFERAALAAPQ--D----SNILAA 306 (436)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~--~----~~~~~~ 306 (436)
|.+|...|++++|+.+|.+++++.+.. ..++.++|.++...++ +++|+.+|++++++.+. + ..++.+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 121 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQR-MPEAVQYIEKASVMYVENGTPDTAAMALDR 121 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-GGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455666666666666666666654321 3455566666555543 66666666666665322 1 233444
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCY 380 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~~A~~~ 380 (436)
+| .+|.. |++++|+.+|++++++.+.. ..++.++|.++..+|+ +++|+.+
T Consensus 122 lg----------------------~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~ 177 (307)
T 2ifu_A 122 AG----------------------KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK-FDEAAAS 177 (307)
T ss_dssp HH----------------------HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred HH----------------------HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 44 55555 66666666666666655432 3456666666666666 6666666
Q ss_pred HHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 381 FERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 381 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
|++++.+.|.+ ..++..++.++..+|++++|+.+|++++ +.|.+..
T Consensus 178 ~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 178 LQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 66666654432 1345555666666666666666666666 6665543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-17 Score=160.30 Aligned_cols=211 Identities=12% Similarity=0.080 Sum_probs=179.0
Q ss_pred cCCCChHHHHHhhcCCCCC-----CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHH
Q 013800 177 ERPVSPPMYLAMGLGISVP-----GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH-------PLLLRNYAQLLQK 244 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-------~~~~~~la~~~~~ 244 (436)
.++..|..++..++.+... ..+.++..+|.++...|++++|+.++++++++.+.. +.++..+|.++..
T Consensus 117 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~ 196 (383)
T 3ulq_A 117 REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLD 196 (383)
T ss_dssp TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHH
Confidence 3667888999999887332 235789999999999999999999999999975433 4689999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHH
Q 013800 245 KGDLYRAEDYYNHATMADPGD------GESWMQYAKLVWELHRDQHRALTYFERAAL-----AA-PQDSNILAAYACFLW 312 (436)
Q Consensus 245 ~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~d~~~A~~~~~~al~-----~~-p~~~~~~~~la~~~~ 312 (436)
.|++++|+.+|++++++.+.. ..++.++|.++...++ +++|+.+|+++++ .+ |....++..+|.++.
T Consensus 197 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 275 (383)
T 3ulq_A 197 LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ-YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY 275 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 999999999999999885543 3589999999999975 9999999999999 46 778899999999999
Q ss_pred HccCchHHHHHHHHHHHH-----------------hHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 013800 313 EMEDDGEDDKAQEEHIQV-----------------LPIQSKGD---LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH 372 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~-----------------~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 372 (436)
..|++++|...+++++.. .++...|+ +++|+.++++. ...|....++..+|.++...|+
T Consensus 276 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~ 354 (383)
T 3ulq_A 276 KLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKN 354 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999987765 56667788 78888888776 3334456789999999999999
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 013800 373 DHDKALCYFERAVQASPA 390 (436)
Q Consensus 373 d~~~A~~~~~~al~~~p~ 390 (436)
+++|+.+|++++++...
T Consensus 355 -~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 355 -FQKASAYFLKVEQVRQL 371 (383)
T ss_dssp -HHHHHHHHHHHHHHHTS
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 99999999999987543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-16 Score=140.72 Aligned_cols=177 Identities=14% Similarity=0.066 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 013800 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR---DQHRALTYFE 291 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---d~~~A~~~~~ 291 (436)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. .++.+++.+|.+|.. ++ ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 4578889998886 68899999999999999999999999999875 688999999988876 42 6999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Q 013800 292 RAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS----KGDLEGAEEYFSRAILANP--GDGEIMSQYAK 365 (436)
Q Consensus 292 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~ 365 (436)
++++ +.++.+++++| .+|.. .+++++|+.+|+++++..+ .++.++++||.
T Consensus 78 ~A~~--~g~~~a~~~Lg----------------------~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~ 133 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLA----------------------RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGL 133 (212)
T ss_dssp HHHH--TTCHHHHHHHH----------------------HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHH
T ss_pred HHHH--CCCHHHHHHHH----------------------HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHH
Confidence 9954 57899999999 66665 7899999999999998887 35899999999
Q ss_pred HHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-C-----ChHHHHHHHHHHHhhC
Q 013800 366 LVWE----LHHDHDKALCYFERAVQASPADSHVLAAYACFLWET-E-----EDEDDSKSSDQFQQVA 422 (436)
Q Consensus 366 ~~~~----~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~l~ 422 (436)
+|.. .++ +++|+.+|++++++ +.++.+++++|.+|... | ++++|+.+|+++.+..
T Consensus 134 ~y~~g~g~~~d-~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 134 IYASGVHGPED-DVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTSSSSCC-HHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCC-HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 9988 767 99999999999988 66778899999998764 3 8999999999998873
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-15 Score=145.20 Aligned_cols=223 Identities=9% Similarity=0.035 Sum_probs=166.5
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-CHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFD-DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKK-G-DLYRAEDY 254 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~-g-~~~~A~~~ 254 (436)
...++..++..++.+.+ .+..+|...+.++...| .+++++..+.+++..+|++..+|..++.++... + ++++++++
T Consensus 69 ~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 69 KSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 33456677777777777 67777777777777777 477777777777777777777777777777776 6 77777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHH
Q 013800 255 YNHATMADPGDGESWMQYAKLVWELHRDQH--------RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE 326 (436)
Q Consensus 255 ~~~al~~~p~~~~~~~~la~~~~~~~~d~~--------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 326 (436)
+.++++.+|.+..+|..++.++...+. ++ +++++++++++.+|.+..+|...+
T Consensus 148 ~~k~L~~dpkNy~AW~~R~wvl~~l~~-~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~------------------ 208 (349)
T 3q7a_A 148 IHGSLLPDPKNYHTWAYLHWLYSHFST-LGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRW------------------ 208 (349)
T ss_dssp HHHHTSSCTTCHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcc-ccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHH------------------
Confidence 777777777777777777777776664 55 777777777777777777777777
Q ss_pred HHHHhHHHHcCC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-------------------HHHHHHH
Q 013800 327 HIQVLPIQSKGD-------LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHD-------------------HDKALCY 380 (436)
Q Consensus 327 ~~~~~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d-------------------~~~A~~~ 380 (436)
.++...++ ++++++++++++.++|++..+|+++..++...|+. ..+-...
T Consensus 209 ----~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (349)
T 3q7a_A 209 ----YLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAF 284 (349)
T ss_dssp ----HHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-------------
T ss_pred ----HHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHH
Confidence 55555554 78999999999999999999999999999888773 2233333
Q ss_pred HHHHHHhC------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHH-hhCCC
Q 013800 381 FERAVQAS------PADSHVLAAYACFLWETEEDEDDSKSSDQFQ-QVAPI 424 (436)
Q Consensus 381 ~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~l~p~ 424 (436)
+...+... +..+.++..++.+|.+.|+.++|+++++... +.+|.
T Consensus 285 ~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 285 GFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp -CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence 33333322 4678999999999999999999999999976 55664
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=155.19 Aligned_cols=193 Identities=10% Similarity=-0.084 Sum_probs=170.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------
Q 013800 211 FDDSAEAEEYYKRMIDEYPCHPLLLRNY-------AQLLQKKGDLYRAEDYYNHATMADPGDG----------------- 266 (436)
Q Consensus 211 ~g~~~~A~~~~~~al~~~P~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~----------------- 266 (436)
-+++..|.+.|.+++.++|+..++|..+ +.++...++..+++..+++++.+.|...
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence 5999999999999999999999999999 8999999999999999999999877543
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH
Q 013800 267 ----ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA 342 (436)
Q Consensus 267 ----~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A 342 (436)
.++..++.++...++ |++|.+.|+.++...|++. +++.++ .++.+.++|++|
T Consensus 99 ~~r~dl~LayA~~L~~~g~-y~eA~~~l~~~~~~~p~~~-~~~~~a----------------------~l~~~~~r~~dA 154 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGN-YADAMEALEAAPVAGSEHL-VAWMKA----------------------VVYGAAERWTDV 154 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTC-HHHHHHHHTSSCCTTCHHH-HHHHHH----------------------HHHHHTTCHHHH
T ss_pred CCHhHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCchH-HHHHHH----------------------HHHHHcCCHHHH
Confidence 445568888888875 9999999999999999888 999999 889999999999
Q ss_pred HHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHCCChHHHHHHHHH
Q 013800 343 EEYFSRAILANPGD--GEIMSQYAKLVWELHHDHDKALCYFERAVQAS--PA-DSHVLAAYACFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 343 ~~~~~~al~~~p~~--~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 417 (436)
+.+|++++...+.. ..+++++|.++..+|+ +++|+.+|++++... |. ...+++.+|.++.++|+.++|...|++
T Consensus 155 ~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~-~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~ 233 (282)
T 4f3v_A 155 IDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL-FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEW 233 (282)
T ss_dssp HHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhccCCcccHHHHHHHHHHHHHHCCC-HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999887653221 4589999999999999 999999999998544 55 567999999999999999999999999
Q ss_pred HHhhCCCChhHH
Q 013800 418 FQQVAPIRQGAV 429 (436)
Q Consensus 418 al~l~p~~~~a~ 429 (436)
++..+|. ..+.
T Consensus 234 a~a~~P~-~~~~ 244 (282)
T 4f3v_A 234 LQTTHPE-PKVA 244 (282)
T ss_dssp HHHHSCC-HHHH
T ss_pred HHhcCCc-HHHH
Confidence 9999998 4433
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-17 Score=155.08 Aligned_cols=197 Identities=15% Similarity=0.067 Sum_probs=161.9
Q ss_pred ChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLV 276 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 276 (436)
.+..+..+|..+...|++++|+.+|++++..+|+++.++.++|.++...|++++|+..|+++++++|++..+++.+|.++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 277 WELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 277 ~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
...++ +++|+..|+++++++|++...+..... ... +..++..+........|.+
T Consensus 83 ~~~g~-~~~A~~~~~~al~l~p~~~~~~~~~~~----------------------~~~---~~~~~~~~~~~~~~~~~~~ 136 (281)
T 2c2l_A 83 LEMES-YDEAIANLQRAYSLAKEQRLNFGDDIP----------------------SAL---RIAKKKRWNSIEERRIHQE 136 (281)
T ss_dssp HHTTC-HHHHHHHHHHHHHHHHHTTCCCCSHHH----------------------HHH---HHHHHHHHHHHHHTCCCCC
T ss_pred HHcCC-HHHHHHHHHHHHHhCccchhhHHHHHH----------------------HHH---HHHHHHHHHHHHHHHHhhh
Confidence 99975 999999999999999876432221111 111 1122233333444567788
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CChHHHHHHHHHHHhhC
Q 013800 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET-EEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~l~ 422 (436)
..+...++.++ .|+ +++|++.++++++++|++......++.++.+. +.+++|.+.|.++.+..
T Consensus 137 ~~i~~~l~~l~--~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 137 SELHSYLTRLI--AAE-RERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp CHHHHHHHHHH--HHH-HHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHHH--HHH-HHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 88888887765 577 99999999999999999888888888777776 67889999999887643
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.7e-17 Score=169.02 Aligned_cols=188 Identities=14% Similarity=0.066 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-C
Q 013800 214 SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGD----------LYRAEDYYNHATMADPGDGESWMQYAKLVWELHR-D 282 (436)
Q Consensus 214 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-d 282 (436)
.++|++.+.+++..+|++..+|..++.++...|+ +++|+++++++++.+|++..+|..++.++...+. +
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 4788999999999999999999999999999988 9999999999999999999999999999888862 3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG-DLEGAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~ 361 (436)
+++|+++++++++++|.+..+|...+ .+....| .++++++++.++++.+|.+..+|+
T Consensus 125 ~~~el~~~~k~l~~d~~N~~aW~~R~----------------------~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~ 182 (567)
T 1dce_A 125 WARELELCARFLEADERNFHCWDYRR----------------------FVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 182 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred HHHHHHHHHHHHhhccccccHHHHHH----------------------HHHHHcCCChHHHHHHHHHHHHHCCCCccHHH
Confidence 79999999999999999999999999 7777888 899999999999999999999999
Q ss_pred HHHHHHHHh--------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH------------HHHHH
Q 013800 362 QYAKLVWEL--------------HHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED------------DSKSS 415 (436)
Q Consensus 362 ~la~~~~~~--------------g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~------------A~~~~ 415 (436)
+++.++..+ +. +++|++++.+|+.++|++..+|..++.++...+++++ |+..|
T Consensus 183 ~r~~ll~~l~~~~~~~~~~~~~~~~-~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f 261 (567)
T 1dce_A 183 YRSCLLPQLHPQPDSGPQGRLPENV-LLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCF 261 (567)
T ss_dssp HHHHHHHHHSCCCCSSSCCSSCHHH-HHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEE
T ss_pred HHHHHHHhhcccccccccccccHHH-HHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEe
Confidence 999999886 55 8999999999999999999999999999999988766 44556
Q ss_pred HHHHhhCCC
Q 013800 416 DQFQQVAPI 424 (436)
Q Consensus 416 ~~al~l~p~ 424 (436)
.+++.+.|.
T Consensus 262 ~~~i~~~~~ 270 (567)
T 1dce_A 262 SRPLTVGSR 270 (567)
T ss_dssp EEEECTTBT
T ss_pred ccceecccc
Confidence 666666554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-15 Score=122.24 Aligned_cols=133 Identities=22% Similarity=0.417 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWE 313 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 313 (436)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...++ +++|+.+|++++...|.+..++..++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~----- 76 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPRSAEAWYNLG----- 76 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHH-----
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcC-HHHHHHHHHHHHHHCCCchHHHHHHH-----
Confidence 345555555555555555555555555555555555555555555542 55555555555555555555555555
Q ss_pred ccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013800 314 MEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~ 390 (436)
.++...|++++|+.++++++...|.+..++..+|.++...|+ +++|+..+++++..+|.
T Consensus 77 -----------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 77 -----------------NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPR 135 (136)
T ss_dssp -----------------HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHSTT
T ss_pred -----------------HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc-HHHHHHHHHHHHccCCC
Confidence 555555555555555555555555555555555555555555 55555555555555553
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.2e-17 Score=137.61 Aligned_cols=118 Identities=13% Similarity=0.012 Sum_probs=77.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013800 219 EYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAP 298 (436)
Q Consensus 219 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p 298 (436)
..|++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...++ +++|+.+|++++.++|
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ-YDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHST
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCC
Confidence 345666666666666666666666666666666666666666666666666666666666653 6666666666666666
Q ss_pred CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013800 299 QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEI 359 (436)
Q Consensus 299 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 359 (436)
+++.+++.+| .++...|++++|+.+|+++++++|+++..
T Consensus 87 ~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 87 XEPRFPFHAA----------------------ECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp TCTHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCchHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 6666666666 56666666666666666666666655443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-15 Score=148.08 Aligned_cols=224 Identities=16% Similarity=0.081 Sum_probs=183.4
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GE 267 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 267 (436)
..+...|.++...|++++|+.++++++...|... .++..+|.++...|++++|+..+++++.+.+.. ..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3456677888899999999999999999887553 267889999999999999999999999976543 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---------
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAALAA--------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------- 330 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------- 330 (436)
++..+|.++...|+ +++|+.+|++++++. |....++.++|.++...|++++|...+.+.+..
T Consensus 95 ~~~~la~~~~~~G~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 95 SLIQQSEILFAQGF-LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 46789999888875 999999999999875 334567788999999999999999999977654
Q ss_pred --------hHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----
Q 013800 331 --------LPIQSKGDLEGAEEYFSRAILANPG--DGEIMS-----QYAKLVWELHHDHDKALCYFERAVQASPAD---- 391 (436)
Q Consensus 331 --------~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~-----~la~~~~~~g~d~~~A~~~~~~al~~~p~~---- 391 (436)
.++...|++++|+.++++++.+.+. .+..+. .++.++...|+ +++|...+++++...|..
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD-KAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC-HHHHHHHHHhCCCCCCCcchhh
Confidence 6778899999999999999987432 211221 34455788999 999999999998877653
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 392 SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 392 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
...+..++.++...|++++|...+++++...+.
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 285 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARS 285 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 345788999999999999999999999887543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.7e-17 Score=136.37 Aligned_cols=120 Identities=11% Similarity=-0.017 Sum_probs=104.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 013800 252 EDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331 (436)
Q Consensus 252 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 331 (436)
...|++++.++|++..+++.+|.+++..++ +++|+..|++++.++|+++.+|+.+| .
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg----------------------~ 63 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGX-YEDAHXVFQALCVLDHYDSRFFLGLG----------------------A 63 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------H
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCcccHHHHHHHH----------------------H
Confidence 456788888899999999999988888875 99999999999999999999999999 8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL 395 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~ 395 (436)
++...|++++|+.+|++++.++|+++.+++++|.++..+|+ +++|+..|++++++.|+++...
T Consensus 64 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 64 CRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE-LAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCCCcch
Confidence 88888999999999999999999999999999999999999 9999999999999888876543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.68 E-value=6.1e-15 Score=120.39 Aligned_cols=134 Identities=15% Similarity=0.329 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHH
Q 013800 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYF 346 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~ 346 (436)
.+++.+|.++...++ +++|+..|+++++..|.+..++..++ .++...|++++|+.++
T Consensus 2 ~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~a----------------------~~~~~~~~~~~A~~~~ 58 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGD-YDEAIEYYQKALELDPRSAEAWYNLG----------------------NAYYKQGDYDEAIEYY 58 (136)
T ss_dssp HHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHHTCHHHHHHHH
T ss_pred cHHHHHHHHHHHcCc-HHHHHHHHHHHHHcCCcchhHHHHHH----------------------HHHHHhcCHHHHHHHH
Confidence 467889999998874 99999999999999999999999999 8888899999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 347 SRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 347 ~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
++++...|.+..++..+|.++...|+ +++|+..+++++...|.+..++..++.++...|++++|+..+++++.+.|.
T Consensus 59 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 59 QKALELDPRSAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHCCCchHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999 999999999999999999999999999999999999999999999999875
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-15 Score=134.83 Aligned_cols=186 Identities=17% Similarity=0.089 Sum_probs=158.6
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG----DLYRAEDYYN 256 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g----~~~~A~~~~~ 256 (436)
++..++.++... +++.++..+|.++...+++++|+.+|+++++. .++.+++++|.+|.. + ++++|+.+|+
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 455566666543 67789999999999999999999999999886 589999999999998 7 9999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 013800 257 HATMADPGDGESWMQYAKLVWE----LHRDQHRALTYFERAALAAP--QDSNILAAYACFLWEMEDDGEDDKAQEEHIQV 330 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~----~~~d~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 330 (436)
++++ +.++.+++.+|.+|.. . +|+++|+.+|+++++..+ .++.++++||
T Consensus 78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~-~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg---------------------- 132 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLARVLVNRQAGA-TDVAHAITLLQDAARDSESDAAVDAQMLLG---------------------- 132 (212)
T ss_dssp HHHH--TTCHHHHHHHHHHHTCGGGSS-CCHHHHHHHHHHHTSSTTSHHHHHHHHHHH----------------------
T ss_pred HHHH--CCCHHHHHHHHHHHHcCCCCc-cCHHHHHHHHHHHHHcCCCcchHHHHHHHH----------------------
Confidence 9965 5799999999999876 4 469999999999999988 4599999999
Q ss_pred hHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 331 LPIQS----KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH-----HDHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 331 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~d~~~A~~~~~~al~~~p~~~~~~~~la~ 400 (436)
.+|.. .+++++|+.+|+++++. +.++.++++||.+|.... .|+++|+.+|+++.+... ..+...++.
T Consensus 133 ~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~--~~A~~~l~~ 208 (212)
T 3rjv_A 133 LIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF--DTGCEEFDR 208 (212)
T ss_dssp HHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 77777 78999999999999998 677889999999998743 149999999999999854 455555554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-16 Score=131.84 Aligned_cols=122 Identities=17% Similarity=0.049 Sum_probs=76.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 220 YYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ 299 (436)
Q Consensus 220 ~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~ 299 (436)
.|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...++ +++|+.+|++++.++|+
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL-YEQALQSYSYGALMDIN 84 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTT
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCC
Confidence 45556666666666666666666666666666666666666666666666666666666653 66666666666666666
Q ss_pred CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 300 DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYA 364 (436)
Q Consensus 300 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 364 (436)
++.+++.+| .++...|++++|+.+|+++++++|+++.......
T Consensus 85 ~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 85 EPRFPFHAA----------------------ECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp CTHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred CcHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 666666666 5666666666666666666666666554444333
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-15 Score=144.65 Aligned_cols=187 Identities=10% Similarity=0.063 Sum_probs=153.3
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH------PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG--D----GE 267 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~ 267 (436)
.+...|.++...|++++|+.+|.+++++.+.. ..++.++|.+|..+|++++|+.+|++++++.+. + ..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34555778899999999999999999986532 468899999999999999999999999998543 2 46
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQD------SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG 341 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~ 341 (436)
++.++|.+|.. + ++++|+.+|++++++.|.. ..++.++| .++..+|++++
T Consensus 118 ~~~~lg~~~~~-g-~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg----------------------~~~~~~g~~~~ 173 (307)
T 2ifu_A 118 ALDRAGKLMEP-L-DLSKAVHLYQQAAAVFENEERLRQAAELIGKAS----------------------RLLVRQQKFDE 173 (307)
T ss_dssp HHHHHHHHHTT-T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------HHHHHTTCHHH
T ss_pred HHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH----------------------HHHHHcCCHHH
Confidence 78899999877 5 6999999999999997653 45677778 88899999999
Q ss_pred HHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCChHH
Q 013800 342 AEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-----HVLAAYACFLWETEEDED 410 (436)
Q Consensus 342 A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~ 410 (436)
|+.+|++++++.|.+ ..++..+|.++..+|+ +++|+.+|++++ ++|... ..+..++..+ ..|+.+.
T Consensus 174 A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~-~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~ 250 (307)
T 2ifu_A 174 AAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD-YVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQ 250 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHH
Confidence 999999999986643 3478889999999999 999999999999 999754 2344555544 5677655
Q ss_pred HHH
Q 013800 411 DSK 413 (436)
Q Consensus 411 A~~ 413 (436)
+..
T Consensus 251 ~~~ 253 (307)
T 2ifu_A 251 LLR 253 (307)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.8e-15 Score=147.08 Aligned_cols=189 Identities=15% Similarity=0.120 Sum_probs=124.6
Q ss_pred hhhhHhhhhhhCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 200 AGEVVDLIMPNFD---DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKK----GDLYRAEDYYNHATMADPGDGESWMQY 272 (436)
Q Consensus 200 ~~~~lg~~~~~~g---~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l 272 (436)
++..+|.++...| ++++|+.+|+++++..|..+..++++|.+|... +++++|+.+|+++. |.++.+++.+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L 254 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL 254 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence 5555555555555 555555555555555555555555555555433 45555555555554 5555555555
Q ss_pred HHHHH--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC-----CHHHHHHH
Q 013800 273 AKLVW--ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG-----DLEGAEEY 345 (436)
Q Consensus 273 a~~~~--~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g-----~~~~A~~~ 345 (436)
|.+|+ ...+++++|+.+|+++++. +++.+++++| .+|. .| ++++|+.+
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg----------------------~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLG----------------------KLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHH----------------------HHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHH----------------------HHHH-cCCCCCCCHHHHHHH
Confidence 55533 2223455555555555533 2555555555 5555 45 99999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHH
Q 013800 346 FSRAILANPGDGEIMSQYAKLVWE----LHHDHDKALCYFERAVQASPADSHVLAAYACFLWE----TEEDEDDSKSSDQ 417 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~----~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~ 417 (436)
|+++. +.++.++++||.+|.. ..+ +++|+.+|+++.+ +.++.+.+++|.+|.. ..+..+|..+|++
T Consensus 310 ~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d-~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 310 FEKAV---GREVAADYYLGQIYRRGYLGKVY-PQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHTTT---TTCHHHHHHHHHHHHTTTTSSCC-HHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHh---CCCHHHHHHHHHHHHCCCCCCcC-HHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 99998 8889999999988876 225 9999999999876 4567889999999875 4588999999999
Q ss_pred HHhhC
Q 013800 418 FQQVA 422 (436)
Q Consensus 418 al~l~ 422 (436)
+.+..
T Consensus 384 A~~~g 388 (452)
T 3e4b_A 384 AKAQD 388 (452)
T ss_dssp HHTTC
T ss_pred HHHCC
Confidence 98864
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-16 Score=140.38 Aligned_cols=182 Identities=12% Similarity=0.011 Sum_probs=117.3
Q ss_pred hHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013800 203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d 282 (436)
+.+......|+++++.+.+.......+..+..+..+|.+++..|++++|+..|++++.+.|.++..... .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--~-------- 78 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--I-------- 78 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--H--------
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--h--------
Confidence 344455556666666666666666555566666666666666666666666666666666554321100 0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ 362 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (436)
.......+ ...++.++| .++...|++++|+.+|+++++++|+++.+++.
T Consensus 79 ----~~~~~~~~-----~~~~~~~la----------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 127 (198)
T 2fbn_A 79 ----LLDKKKNI-----EISCNLNLA----------------------TCYNKNKDYPKAIDHASKVLKIDKNNVKALYK 127 (198)
T ss_dssp ----HHHHHHHH-----HHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ----HHHHHHHH-----HHHHHHHHH----------------------HHHHHhcCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 00000000 136778888 88899999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH-HHHHHHHhhCCCCh
Q 013800 363 YAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDS-KSSDQFQQVAPIRQ 426 (436)
Q Consensus 363 la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~l~p~~~ 426 (436)
+|.++..+|+ +++|+..|+++++++|++..++..++.++..+++..++. ..|.+.+.....+.
T Consensus 128 lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 191 (198)
T 2fbn_A 128 LGVANMYFGF-LEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGPLYE 191 (198)
T ss_dssp HHHHHHHHTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHccc-HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 9999999999 999999999999999999999999999999999888877 55666665544443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=132.71 Aligned_cols=131 Identities=10% Similarity=0.064 Sum_probs=112.7
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHcCCH--
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL-VWELHRDQ-- 283 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~d~-- 283 (436)
-+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|.++.++..+|.+ +...+ ++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~-~~~~ 97 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS-QHMT 97 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT-TCCC
T ss_pred hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC-Ccch
Confidence 345568999999999999999999999999999999999999999999999999999999999999998 55655 47
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 284 HRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIM 360 (436)
Q Consensus 284 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (436)
++|+.+|+++++.+|++..+++.+| .++...|++++|+..|+++++++|.+....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLA----------------------SDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHH----------------------HHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999999999999999999999 888888999999999999999999875544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.65 E-value=4.6e-16 Score=130.81 Aligned_cols=125 Identities=16% Similarity=0.015 Sum_probs=102.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH
Q 013800 253 DYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332 (436)
Q Consensus 253 ~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 332 (436)
..|++++.++|++...++.+|.+++..++ +++|+..|++++..+|+++.+|+.+| .+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg----------------------~~ 61 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGK-WDDAQKIFQALCMLDHYDARYFLGLG----------------------AC 61 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHhCCccHHHHHHHH----------------------HH
Confidence 46777788888888888889988888874 99999999999999999999998888 88
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
+...|++++|+.+|++++.++|+++.+++++|.++..+|+ +++|+..|+++++++|+++........+
T Consensus 62 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 62 RQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGD-LDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 8888899999999999999999999999999999999988 8999999999998888876554444433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.9e-15 Score=120.89 Aligned_cols=113 Identities=18% Similarity=0.080 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
+..+..+|..++..|++++|+..|+++++++|.++.+|..+|.++...++ +++|+.+|+++++++|++..+++.+|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg--- 79 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS-FPEAIADCNKAIEKDPNFVRAYIRKA--- 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCcHHHHHHHH---
Confidence 34445555555555555555555555555555555555555555444442 55555555555555555555555555
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHH
Q 013800 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN------PGDGEIMSQYAKLV 367 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~ 367 (436)
.++...|++++|+..|+++++++ |.+..++..++.+.
T Consensus 80 -------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 80 -------------------TAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp -------------------HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred -------------------HHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 44444555555555555555554 44444444444443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=130.06 Aligned_cols=133 Identities=16% Similarity=0.090 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW 312 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 312 (436)
..++.+|.++...|++++|+..|++++ +| ++.++..+|.++...++ +++|+.+|+++++++|++..+++.+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~lg---- 78 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKN-MTEAEKAFTRSINRDKHLAVAYFQRG---- 78 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCccchHHHHHHH----
Confidence 346778888888888888888888885 33 67888888888888764 88888888888888888888888888
Q ss_pred HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHhcCCHHH
Q 013800 313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG----------------EIMSQYAKLVWELHHDHDK 376 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~d~~~ 376 (436)
.++...|++++|+..|+++++..|.+. .+++++|.++..+|+ +++
T Consensus 79 ------------------~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~ 139 (213)
T 1hh8_A 79 ------------------MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE-WKK 139 (213)
T ss_dssp ------------------HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC-HHH
T ss_pred ------------------HHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC-HHH
Confidence 788888888889999999888877766 999999999999999 999
Q ss_pred HHHHHHHHHHhCCCCH
Q 013800 377 ALCYFERAVQASPADS 392 (436)
Q Consensus 377 A~~~~~~al~~~p~~~ 392 (436)
|+..|++++++.|++.
T Consensus 140 A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 140 AEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHcCcccc
Confidence 9999999999999864
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.2e-16 Score=137.45 Aligned_cols=109 Identities=17% Similarity=0.045 Sum_probs=81.8
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP----------------LLLRNYAQLLQKKGDLYRAEDYYNHATMAD 262 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 262 (436)
..+..+|..+...|++++|+.+|++++...|.++ .++.++|.++...|++++|+.+++++++++
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 6788999999999999999999999999999876 666666776666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 263 PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 263 p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
|.++.+++.+|.++...++ +++|+.+|+++++++|++..++..++
T Consensus 119 p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~ 163 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGF-LEEAKENLYKAASLNPNNLDIRNSYE 163 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 6666666666666666653 66666666666666666666666666
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-14 Score=122.20 Aligned_cols=129 Identities=16% Similarity=0.089 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW 312 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 312 (436)
..+..+|.++...|++++|+..|++++..+|.+..++..+|.++...++ +++|+.+|+++++++|.+..+++.+|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~a---- 88 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC-YGYALGDATRAIELDKKYIKGYYRRA---- 88 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcccHHHHHHHH----
Confidence 4455555555555555555555555555555555555555555555442 55555555555555555555555555
Q ss_pred HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHhcCCHHHHHHHHHHHH
Q 013800 313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL--VWELHHDHDKALCYFERAV 385 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~d~~~A~~~~~~al 385 (436)
.++...|++++|+.+|+++++++|.+..++..++.+ +...|+ +++|+..+.++.
T Consensus 89 ------------------~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~ 144 (166)
T 1a17_A 89 ------------------ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA-FERAIAGDEHKR 144 (166)
T ss_dssp ------------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred ------------------HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHHHcccchH
Confidence 445555555555555555555555555554333332 444455 555555555443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.5e-15 Score=128.11 Aligned_cols=130 Identities=9% Similarity=0.116 Sum_probs=114.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013800 242 LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
+...|++++|+..++++++.+|.++.+|..+|.++...++ +++|+.+|+++++++|+++.++..+|
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la------------- 85 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND-YSNSLLAYRQALQLRGENAELYAALA------------- 85 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHCSCHHHHHHHH-------------
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHH-------------
Confidence 3467889999999999999999999999999999988875 99999999999999999999999999
Q ss_pred HHHHHHHHHhH-HHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 322 KAQEEHIQVLP-IQSKGDL--EGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL 395 (436)
Q Consensus 322 ~~~~~~~~~~~-~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~ 395 (436)
.+ +...|++ ++|+.+|+++++.+|++..+++.+|.++...|+ +++|+..|+++++++|++....
T Consensus 86 ---------~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 86 ---------TVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN-YAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp ---------HHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTCCTTSCHH
T ss_pred ---------HHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc-HHHHHHHHHHHHhhCCCCccHH
Confidence 66 6788998 999999999999999999999999999999999 9999999999999999876544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-14 Score=119.32 Aligned_cols=117 Identities=14% Similarity=0.024 Sum_probs=105.1
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHH
Q 013800 264 GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAE 343 (436)
Q Consensus 264 ~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~ 343 (436)
..+..|..+|..++..++ +++|+.+|+++++++|+++.++.++| .++...|++++|+
T Consensus 2 ~~a~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~a----------------------~~~~~~~~~~~A~ 58 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSD-WPNAVKAYTEMIKRAPEDARGYSNRA----------------------AALAKLMSFPEAI 58 (126)
T ss_dssp HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCChHHHHHHH----------------------HHHHHhcCHHHHH
Confidence 456778889999888874 99999999999999999999999999 8888899999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHH
Q 013800 344 EYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS------PADSHVLAAYACFLWE 404 (436)
Q Consensus 344 ~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~ 404 (436)
..|+++++++|+++.+++.+|.++..+|+ +++|+..|+++++++ |.+..++..++.+...
T Consensus 59 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 59 ADCNKAIEKDPNFVRAYIRKATAQIAVKE-YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 999999999999999 8888888888877654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-14 Score=130.04 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=123.5
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
..+..+|.++...|++++|+..|++++ +| ++.+++.+|.++...|++++|+.+|++++.++|.++.++..+|.++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 356788999999999999999999996 44 789999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH
Q 013800 279 LHRDQHRALTYFERAALAAPQDS----------------NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA 342 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A 342 (436)
.++ +++|+.+|++++++.|.+. .+++.+| .++...|++++|
T Consensus 84 ~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------------------~~~~~~g~~~~A 140 (213)
T 1hh8_A 84 TEK-YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIA----------------------FMYAKKEEWKKA 140 (213)
T ss_dssp TTC-HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHH----------------------HHHHHTTCHHHH
T ss_pred ccc-HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHH----------------------HHHHHccCHHHH
Confidence 875 9999999999999888876 8999999 888999999999
Q ss_pred HHHHHHHHHhCCCC
Q 013800 343 EEYFSRAILANPGD 356 (436)
Q Consensus 343 ~~~~~~al~~~p~~ 356 (436)
+.+|+++++++|++
T Consensus 141 ~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 141 EEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHTTCCSG
T ss_pred HHHHHHHHHcCccc
Confidence 99999999999986
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-14 Score=134.78 Aligned_cols=172 Identities=12% Similarity=0.014 Sum_probs=143.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 013800 228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE------SWMQYAKLVWELHRDQHRALTYFERAALAAPQD- 300 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~- 300 (436)
+|.....+...+..+...|++++|++.+.++++..+.... .++.+|.++...+ ++++|+.+|++++.+.+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~ 149 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV-DYEYCILELKKLLNQQLTGI 149 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHTTCCCSS
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCC
Confidence 3444566778889999999999999999999998887543 3556776666655 5999999999999876543
Q ss_pred -----HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHH
Q 013800 301 -----SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAI---LANPGDG----EIMSQYAKLVW 368 (436)
Q Consensus 301 -----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~ 368 (436)
..++..+| .+|...|++++|+.+|++++ +..|++. .+++++|.++.
T Consensus 150 ~~~~~~~~~~~lg----------------------~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~ 207 (293)
T 2qfc_A 150 DVYQNLYIENAIA----------------------NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY 207 (293)
T ss_dssp CTTHHHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH
Confidence 55778888 88999999999999999999 4566643 68999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCChHHH-HHHHHHHHhhCC
Q 013800 369 ELHHDHDKALCYFERAVQASPA------DSHVLAAYACFLWETEEDEDD-SKSSDQFQQVAP 423 (436)
Q Consensus 369 ~~g~d~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~l~p 423 (436)
.+|+ +++|+.++++++++.+. ...++.++|.++..+|++++| ..+|++++.+..
T Consensus 208 ~~~~-y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 208 LDSR-YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HTTC-HHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhh-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 9999 99999999999987643 268899999999999999999 888999998753
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-14 Score=121.95 Aligned_cols=133 Identities=16% Similarity=0.092 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH
Q 013800 266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY 345 (436)
Q Consensus 266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~ 345 (436)
+..+..+|.+++..++ +++|+.+|+++++.+|.+..++..+| .++...|++++|+.+
T Consensus 13 ~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~a----------------------~~~~~~~~~~~A~~~ 69 (166)
T 1a17_A 13 AEELKTQANDYFKAKD-YENAIKFYSQAIELNPSNAIYYGNRS----------------------LAYLRTECYGYALGD 69 (166)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHH----------------------HHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCChHHHHHHH----------------------HHHHHcCCHHHHHHH
Confidence 4678899999998874 99999999999999999999999999 888999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHCCChHHHHHHHHHHHhhC
Q 013800 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC--FLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~l~ 422 (436)
|+++++++|.++.+++.+|.++..+|+ +++|+.+|+++++++|.+..++..++. .+...|++++|+..+.++..+.
T Consensus 70 ~~~a~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 70 ATRAIELDKKYIKGYYRRAASNMALGK-FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 999999999999999999999999999 999999999999999999988855544 4888999999999999887653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.8e-14 Score=142.75 Aligned_cols=193 Identities=15% Similarity=0.114 Sum_probs=157.9
Q ss_pred ChhhhhhHhhhhhhCCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHH
Q 013800 197 FDDAGEVVDLIMPNFDDS----AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG---DLYRAEDYYNHATMADPGDGESW 269 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~----~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~ 269 (436)
.+.++..+|.++...+.+ +.+..+++.+...+|. +++.+|.+|...| ++++|+.+|+++.+..+.....+
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~ 216 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV 216 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH
Confidence 345777888888877744 4444455555555553 8899999999999 89999999999999999999988
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHH
Q 013800 270 MQYAKLVWEL---HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYF 346 (436)
Q Consensus 270 ~~la~~~~~~---~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~ 346 (436)
+.+|.+|... .+|+++|+.+|+++. |+++.+++++|.++... ...+++++|+.+|
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~-------------------~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDF-------------------PELGDVEQMMKYL 274 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHS-------------------GGGCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhC-------------------CCCCCHHHHHHHH
Confidence 9999887543 146899999999988 88999999999432210 3589999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHH
Q 013800 347 SRAILANPGDGEIMSQYAKLVWELH-----HDHDKALCYFERAVQASPADSHVLAAYACFLWE----TEEDEDDSKSSDQ 417 (436)
Q Consensus 347 ~~al~~~p~~~~~~~~la~~~~~~g-----~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~ 417 (436)
+++.+. .++.++++||.+|. .| + +++|+.+|+++. +.++.+++++|.+|.. ..++++|+.+|++
T Consensus 275 ~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d-~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 275 DNGRAA--DQPRAELLLGKLYY-EGKWVPAD-AKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHHHHT--TCHHHHHHHHHHHH-HCSSSCCC-HHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHHHHC--CCHHHHHHHHHHHH-cCCCCCCC-HHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 999875 48999999999998 56 6 999999999998 8999999999998887 4499999999999
Q ss_pred HHhh
Q 013800 418 FQQV 421 (436)
Q Consensus 418 al~l 421 (436)
+.+.
T Consensus 348 Aa~~ 351 (452)
T 3e4b_A 348 AARN 351 (452)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 9885
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.61 E-value=5e-15 Score=145.20 Aligned_cols=167 Identities=13% Similarity=0.009 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Q 013800 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADP------GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD------- 300 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------- 300 (436)
.++.+|..+...|++++|+.+|++++.+.+ ..+.++..+|.++...++ +++|+.++++++++.+..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQ-THVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhCCCchhhH
Confidence 577899999999999999999999998742 246789999999999975 999999999999986542
Q ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCCH
Q 013800 301 SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP------GDGEIMSQYAKLVWELHHDH 374 (436)
Q Consensus 301 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~d~ 374 (436)
..++..+| .++...|++++|+.+|++++++.+ ....++.++|.++..+|+ +
T Consensus 182 ~~~~~~lg----------------------~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~-~ 238 (378)
T 3q15_A 182 IQSLFVIA----------------------GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD-D 238 (378)
T ss_dssp HHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-H
T ss_pred HHHHHHHH----------------------HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-H
Confidence 34556677 888888999999999999888643 124578889999999998 9
Q ss_pred HHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 375 DKALCYFERAVQ-----ASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 375 ~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
++|+.+|++++. .+|....++..+|.++..+|++++|+.++++++++.+.
T Consensus 239 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 999999999988 67777788899999999999999999999999988544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-14 Score=125.08 Aligned_cols=112 Identities=18% Similarity=0.158 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACF 310 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 310 (436)
++..++.+|.++...|++++|+.+|+++++++|.++.+|..+|.++...++ +++|+.+|+++++++|++..+++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg-- 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQ-HEKAAEDAELATVVDPKYSKAWSRLG-- 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHH--
Confidence 345555666666666666666666666666666666666666655555543 56666666666666665555555555
Q ss_pred HHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 311 LWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAK 365 (436)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 365 (436)
.++..+|++++|+.+|+++++++|++..+|..++.
T Consensus 87 --------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 87 --------------------LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp --------------------HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred --------------------HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 55555556666666666666665555554444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-16 Score=148.49 Aligned_cols=197 Identities=12% Similarity=-0.070 Sum_probs=171.9
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhH-------hhhhhhCCCHHHHHHHHHHHHHhCCCCH------------------
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVV-------DLIMPNFDDSAEAEEYYKRMIDEYPCHP------------------ 232 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~l-------g~~~~~~g~~~~A~~~~~~al~~~P~~~------------------ 232 (436)
++..+..+|.++..+++ +..++|.++ +.++...+++.+++..+++.+.+.|...
T Consensus 21 d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~ 99 (282)
T 4f3v_A 21 SEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVT 99 (282)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECS
T ss_pred CHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccC
Confidence 45577889999999999 899999999 8999999999999999999999877543
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHH
Q 013800 233 ---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD--SNILAAY 307 (436)
Q Consensus 233 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~--~~~~~~l 307 (436)
++...++.++...|+|++|.+.|..++...|++. +++.+|.+++..++ |++|+.+|++++...+.. ..+++.+
T Consensus 100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r-~~dA~~~l~~a~~~~d~~~~~~a~~~L 177 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAER-WTDVIDQVKSAGKWPDKFLAGAAGVAH 177 (282)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTC-HHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCC-HHHHHHHHHHhhccCCcccHHHHHHHH
Confidence 4455689999999999999999999999999988 99999999999875 999999999887653221 4578899
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013800 308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN--PG-DGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~d~~~A~~~~~~a 384 (436)
| .++..+|++++|+.+|++++... |. .+++++++|.++..+|+ .++|...|+++
T Consensus 178 G----------------------~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr-~deA~~~l~~a 234 (282)
T 4f3v_A 178 G----------------------VAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN-ESAAVALLEWL 234 (282)
T ss_dssp H----------------------HHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC-HHHHHHHHHHH
T ss_pred H----------------------HHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence 9 88999999999999999998654 55 66899999999999999 99999999999
Q ss_pred HHhCCCCHHHHHHHHHH
Q 013800 385 VQASPADSHVLAAYACF 401 (436)
Q Consensus 385 l~~~p~~~~~~~~la~~ 401 (436)
+..+|+ ..++..|...
T Consensus 235 ~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 235 QTTHPE-PKVAAALKDP 250 (282)
T ss_dssp HHHSCC-HHHHHHHHCT
T ss_pred HhcCCc-HHHHHHHhCC
Confidence 999999 8777766543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-15 Score=142.16 Aligned_cols=168 Identities=11% Similarity=-0.004 Sum_probs=141.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
|.++..+..+|.++...|++++|+..|+++++.+|.++.++.++|.++...++ +++|+..|+++++++|++..+++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-PEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999985 99999999999999999999999999
Q ss_pred HHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013800 309 CFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~ 388 (436)
.++..+|++++|+..|+++++++|++...+......... ..++...........
T Consensus 80 ----------------------~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 133 (281)
T 2c2l_A 80 ----------------------QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR----IAKKKRWNSIEERRI 133 (281)
T ss_dssp ----------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH----HHHHHHHHHHHHTCC
T ss_pred ----------------------HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 889999999999999999999998764333322222222 233334444444567
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 389 PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 389 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
|.+..+...++.++ .|++++|++.+++++++.|..
T Consensus 134 ~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~ 168 (281)
T 2c2l_A 134 HQESELHSYLTRLI--AAERERELEECQRNHEGHEDD 168 (281)
T ss_dssp CCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCH
T ss_pred hhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccch
Confidence 78888888887765 689999999999999998864
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-14 Score=116.90 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 230 CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYAC 309 (436)
Q Consensus 230 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~ 309 (436)
.++..+..+|.++...|++++|+..|++++...|.++.++..+|.++...++ +++|+.++++++..+|++..++..+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~- 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGN-YAGAVQDCERAICIDPAYSKAYGRMG- 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH-
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc-hHHHHHHHHHHHhcCccCHHHHHHHH-
Confidence 3445556666666666666666666666666666666666666655555543 56666666666655555555555555
Q ss_pred HHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 013800 310 FLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH 372 (436)
Q Consensus 310 ~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 372 (436)
.++...|++++|+.+|+++++.+|++..++..++.++..+|+
T Consensus 88 ---------------------~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 ---------------------LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp ---------------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred ---------------------HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 555555556666666666666555555555555555555554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-14 Score=117.80 Aligned_cols=116 Identities=19% Similarity=0.190 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
...++.+|.++...|++++|+..|++++..+|.+..++..+|.++...++ +++|+.+|+++++.+|.+..++..+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la--- 91 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE-FQLALKDCEECIQLEPTFIKGYTRKA--- 91 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCchHHHHHHH---
Confidence 34444444444444444444444444444444444444444444444332 44444444444444444444444444
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013800 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL 370 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (436)
.++...|++++|+.+|+++++.+|.+..++..++.++..+
T Consensus 92 -------------------~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 92 -------------------AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp -------------------HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 4444444444444444444444444444444444444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-14 Score=119.36 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
+.++.++|.+++..|+|++|+.+|+++++++|+++.+|.++|.++..+++ +++|+.+|+++++++|++...+..++.++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKK-FAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhh-HHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 45566777777777777777777777777777777777777777777764 77777777777777776554444444444
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYA 364 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 364 (436)
..+| .++..+|++++|+.+|++++...|+ ++....+.
T Consensus 87 ~~lg---------------~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 87 SRAG---------------NAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp HHHH---------------HHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHH---------------HHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 4444 8888899999999999999988875 55554443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.9e-14 Score=131.79 Aligned_cols=165 Identities=12% Similarity=-0.034 Sum_probs=140.9
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP------LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GE 267 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 267 (436)
.+...+..+...|++++|+..++++++..+... ..++.+|.++...|++++|+.+|++++...+.. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445667788899999999999999999888654 346678889999999999999999999876543 56
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAA---LAAPQDS----NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
++..+|.+|...++ +++|+.+|++++ +..|++. .+++++| .+|..+|+++
T Consensus 157 ~~~~lg~~y~~~~~-~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg----------------------~~y~~~~~y~ 213 (293)
T 2qfc_A 157 IENAIANIYAENGY-LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA----------------------KALYLDSRYE 213 (293)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH----------------------HHHHHTTCHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHhHH----------------------HHHHHHhhHH
Confidence 89999999999875 999999999999 5566643 5778888 8899999999
Q ss_pred HHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHhC
Q 013800 341 GAEEYFSRAILANPG------DGEIMSQYAKLVWELHHDHDKA-LCYFERAVQAS 388 (436)
Q Consensus 341 ~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~d~~~A-~~~~~~al~~~ 388 (436)
+|+.+|++++++.+. ...+++++|.++..+|+ +++| ..+|++++.+.
T Consensus 214 ~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~-~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 214 ESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY-EEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHH
Confidence 999999999988543 27899999999999999 9999 88899998753
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-15 Score=154.09 Aligned_cols=153 Identities=12% Similarity=0.093 Sum_probs=131.7
Q ss_pred hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHH
Q 013800 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---------------GESWMQYA 273 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la 273 (436)
...+++++|+..|++++...|+.+..+..+|.+++..|+|++|+..|+++++++|.+ ..+|.++|
T Consensus 245 ~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 245 VTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 356778889999999999999999999999999999999999999999999999998 68899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC
Q 013800 274 KLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN 353 (436)
Q Consensus 274 ~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 353 (436)
.++..+++ |++|+.+|+++++++|++..+++.+| .++..+|++++|+..|+++++++
T Consensus 325 ~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~~g----------------------~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 325 MCYLKLRE-YTKAVECCDKALGLDSANEKGLYRRG----------------------EAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhcC-HHHHHHHHHHHHhcCCccHHHHHHHH----------------------HHHHHccCHHHHHHHHHHHHHhC
Confidence 99888875 99999999999999999999999999 88888899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 013800 354 PGDGEIMSQYAKLVWELHHDHDKALC-YFERAV 385 (436)
Q Consensus 354 p~~~~~~~~la~~~~~~g~d~~~A~~-~~~~al 385 (436)
|++..++..++.++..+++ +++|.. .|.+++
T Consensus 382 P~~~~a~~~l~~~~~~~~~-~~~a~~~~~~~~f 413 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKE-HNERDRRIYANMF 413 (457)
T ss_dssp ----CHHHHHHHHHHHHHH-HHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 9999999999999999888 777764 344433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-14 Score=115.53 Aligned_cols=125 Identities=16% Similarity=0.250 Sum_probs=116.8
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013800 261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
.+|.+..++..+|.++...++ +++|+..|++++...|++..++..+| .++...|+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~a----------------------~~~~~~~~~~ 63 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVEN-FEAAVHFYGKAIELNPANAVYFCNRA----------------------AAYSKLGNYA 63 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHH
T ss_pred cchhhhHHHHHHHHHHHHccC-HHHHHHHHHHHHHcCCCCHHHHHHHH----------------------HHHHHhhchH
Confidence 345567889999999988874 99999999999999999999999999 8888999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q 013800 341 GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDE 409 (436)
Q Consensus 341 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 409 (436)
+|+.++++++..+|.++.++..+|.++...|+ +++|+..|++++++.|++..++..++.++..+|+++
T Consensus 64 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 64 GAVQDCERAICIDPAYSKAYGRMGLALSSLNK-HVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCccCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999 999999999999999999999999999999988763
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-14 Score=122.88 Aligned_cols=117 Identities=14% Similarity=0.124 Sum_probs=107.5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013800 262 DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG 341 (436)
Q Consensus 262 ~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~ 341 (436)
.+.++..++.+|.+++..++ |++|+.+|+++++++|++..+++++| .++...|++++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~----------------------~~~~~~g~~~~ 63 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKE-YSKAIDLYTQALSIAPANPIYLSNRA----------------------AAYSASGQHEK 63 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHH----------------------HHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCcCHHHHHHHH----------------------HHHHHccCHHH
Confidence 34467889999999999875 99999999999999999999999999 88899999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFL 402 (436)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 402 (436)
|+.+|+++++++|+++.+|+++|.++..+|+ +++|+.+|+++++++|++..++..++...
T Consensus 64 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 64 AAEDAELATVVDPKYSKAWSRLGLARFDMAD-YKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999999999999988776666543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.2e-14 Score=134.84 Aligned_cols=185 Identities=14% Similarity=0.130 Sum_probs=144.0
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG-DLYRAEDYYNHATMADPGDGESWMQYAK 274 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~ 274 (436)
....++..+..+....+..++|+.++.+++.++|++..+|..++.++...| .+++++.++.+++..+|++..+|..++.
T Consensus 52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~w 131 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLL 131 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 344666677777777777788888888888888888888888888888888 4888888888888888888888888888
Q ss_pred HHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH--------HHHHH
Q 013800 275 LVWEL-HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE--------GAEEY 345 (436)
Q Consensus 275 ~~~~~-~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~--------~A~~~ 345 (436)
++... +.+++++++++.++++.+|.+..+|...+ .++...|.++ +++++
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~----------------------wvl~~l~~~~~~~~~~~~eELe~ 189 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLH----------------------WLYSHFSTLGRISEAQWGSELDW 189 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHH----------------------HHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHhccccccchhhHHHHHHH
Confidence 88777 42478888888888888888888888888 6666666666 78888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 346 FSRAILANPGDGEIMSQYAKLVWELHHD------HDKALCYFERAVQASPADSHVLAAYACFLW 403 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~~g~d------~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 403 (436)
+.++++.+|.|..+|.+++.++..+++. ++++++++.+++.++|++.. .+..-..++
T Consensus 190 ~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~S-aW~Ylr~Ll 252 (349)
T 3q7a_A 190 CNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS-AWNYLRGFL 252 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 8888888888888888888888777641 47788888888888887643 244444433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.9e-14 Score=116.69 Aligned_cols=122 Identities=11% Similarity=0.081 Sum_probs=114.6
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013800 262 DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG 341 (436)
Q Consensus 262 ~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~ 341 (436)
.|.....+..+|.++...++ +++|+.+|+++++.+|++..++..+| .++...|++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la----------------------~~~~~~~~~~~ 68 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGD-YPQAMKHYTEAIKRNPKDAKLYSNRA----------------------ACYTKLLEFQL 68 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTC-SHHHHHHHHHHHTTCTTCHHHHHHHH----------------------HHHTTTTCHHH
T ss_pred CcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHH----------------------HHHHHhccHHH
Confidence 45678899999999998875 99999999999999999999999999 88889999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 013800 342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEE 407 (436)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 407 (436)
|+.+|+++++.+|.++.+++.+|.++...|+ +++|+.+|+++++.+|.+..++..++.++..+|+
T Consensus 69 A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 69 ALKDCEECIQLEPTFIKGYTRKAAALEAMKD-YTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999 9999999999999999999999999999988764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-13 Score=143.01 Aligned_cols=165 Identities=11% Similarity=0.081 Sum_probs=151.3
Q ss_pred HHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 243 QKKGDL-YRAEDYYNHATMADPGDGESWMQYAKLVWELHRD---------QHRALTYFERAALAAPQDSNILAAYACFLW 312 (436)
Q Consensus 243 ~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d---------~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 312 (436)
...|++ ++|++.+.+++..+|++..+|+.++.++...+.+ +++++++++++++.+|++..+|...+
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~---- 114 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC---- 114 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH----
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH----
Confidence 344444 6789999999999999999999999999998754 99999999999999999999999999
Q ss_pred HccCchHHHHHHHHHHHHhHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCC
Q 013800 313 EMEDDGEDDKAQEEHIQVLPIQSKG--DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH-HDHDKALCYFERAVQASP 389 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~d~~~A~~~~~~al~~~p 389 (436)
+++...+ +++++++++.++++++|.+..+|.+.+.++...| . ++++++++.++++.+|
T Consensus 115 ------------------w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~-~~~el~~~~~~I~~~p 175 (567)
T 1dce_A 115 ------------------WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA-PAEELAFTDSLITRNF 175 (567)
T ss_dssp ------------------HHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC-HHHHHHHHHTTTTTTC
T ss_pred ------------------HHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHCC
Confidence 8888888 7899999999999999999999999999999999 6 9999999999999999
Q ss_pred CCHHHHHHHHHHHHHC--------------CChHHHHHHHHHHHhhCCCChhHHh
Q 013800 390 ADSHVLAAYACFLWET--------------EEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 390 ~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
.+..+|..++.++..+ +.+++|++++.+++.++|+...+-.
T Consensus 176 ~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~ 230 (567)
T 1dce_A 176 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWF 230 (567)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHH
T ss_pred CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHH
Confidence 9999999999998885 5579999999999999999776543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-15 Score=153.13 Aligned_cols=147 Identities=8% Similarity=0.084 Sum_probs=134.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHH
Q 013800 244 KKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---------------SNILAAYA 308 (436)
Q Consensus 244 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---------------~~~~~~la 308 (436)
..+++++|+..|++++...|.....+..+|.+++..++ |++|+.+|+++++++|.+ ..+++++|
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGK-YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999875 999999999999999998 68888999
Q ss_pred HHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013800 309 CFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~ 388 (436)
.++.++|++++|+.+|+++++++|+++.+|+++|.++..+|+ +++|+..|+++++++
T Consensus 325 ----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~-~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 325 ----------------------MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE-FESAKGDFEKVLEVN 381 (457)
T ss_dssp ----------------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTC
T ss_pred ----------------------HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhC
Confidence 899999999999999999999999999999999999999999 999999999999999
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHH
Q 013800 389 PADSHVLAAYACFLWETEEDEDDSKS 414 (436)
Q Consensus 389 p~~~~~~~~la~~~~~~g~~~~A~~~ 414 (436)
|++..++..++.++..++++++|.+.
T Consensus 382 P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-13 Score=109.62 Aligned_cols=116 Identities=21% Similarity=0.376 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
..+++.+|.++...|++++|+.+|++++...|.+..++..+|.++...++ +++|+.+|+++++..|.+..++..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la--- 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAWYNLG--- 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCccHHHHHHHH---
Confidence 34555555555555555555555555555555555555555555555442 55555555555555555555555555
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013800 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL 370 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (436)
.++...|++++|+.+|+++++.+|.++.++..++.++...
T Consensus 85 -------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 85 -------------------NAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp -------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 4445555555555555555555555555555555554443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.5e-14 Score=133.50 Aligned_cols=162 Identities=12% Similarity=-0.023 Sum_probs=127.6
Q ss_pred hHhhhhhhCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 013800 203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHPL------LLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GESWM 270 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 270 (436)
.....+...|++++|+.+++++++..+..+. .+..+|.++...+++++|+.+|++++.+.+.. ..++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3456778889999999999999998776654 33458888888899999999999999975442 34789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHH
Q 013800 271 QYAKLVWELHRDQHRALTYFERAALAA---PQ----DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAE 343 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~~---p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~ 343 (436)
.+|.+|...++ +++|+.+|+++++.. |. ...+++++| .+|..+|++++|+
T Consensus 160 ~lg~~y~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg----------------------~~y~~~~~y~~A~ 216 (293)
T 3u3w_A 160 AIANIYAENGY-LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA----------------------KALYLDSRYEESL 216 (293)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH----------------------HHHHHTTCHHHHH
T ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH----------------------HHHHHHhHHHHHH
Confidence 99999988875 999999999999632 12 234566777 7888888888888
Q ss_pred HHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 344 EYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 344 ~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
.++++++++.+.. +.+++++|.++..+|+++++|+.+|++|+.+
T Consensus 217 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8888888875433 6788888888888885368888888888865
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.8e-14 Score=115.78 Aligned_cols=108 Identities=11% Similarity=0.103 Sum_probs=96.9
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD-------GESWM 270 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 270 (436)
+.++.++|+.+++.|+|++|+.+|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|++ ..++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999998865 35788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY 307 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l 307 (436)
.+|.++...+. +++|+.+|++++...|+ ++....+
T Consensus 88 ~lg~~~~~~~~-~~~A~~~~~kal~~~~~-~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQND-LSLAVQWFHRSLSEFRD-PELVKKV 122 (127)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHcCC-HHHHHHHHHHHHhhCcC-HHHHHHH
Confidence 89999888874 99999999999999885 4444333
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.56 E-value=6.1e-14 Score=132.59 Aligned_cols=164 Identities=12% Similarity=0.013 Sum_probs=136.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE------SWMQYAKLVWELHRDQHRALTYFERAALAAPQD------SN 302 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------~~ 302 (436)
+...+..+...|++++|+..+++++...+..+. .+..+|.++...+ ++++|+.+|++++.+.+.. ..
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV-DYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 445577889999999999999999998877655 2334777766554 5999999999999976542 33
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCCHH
Q 013800 303 ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN-------PGDGEIMSQYAKLVWELHHDHD 375 (436)
Q Consensus 303 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~d~~ 375 (436)
++.++| .+|..+|++++|+.+|+++++.. +....+++++|.++..+|+ ++
T Consensus 157 ~~~~lg----------------------~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~ 213 (293)
T 3u3w_A 157 IENAIA----------------------NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YE 213 (293)
T ss_dssp HHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH-HH
Confidence 677888 88999999999999999999632 2234688999999999999 99
Q ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCC-hHHHHHHHHHHHhhC
Q 013800 376 KALCYFERAVQASPAD------SHVLAAYACFLWETEE-DEDDSKSSDQFQQVA 422 (436)
Q Consensus 376 ~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~-~~~A~~~~~~al~l~ 422 (436)
+|+.++++++++.+.. ..++.++|.++..+|+ +++|+++|++++.+.
T Consensus 214 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 214 ESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 9999999999886543 6899999999999995 699999999999874
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.8e-14 Score=114.78 Aligned_cols=119 Identities=14% Similarity=-0.001 Sum_probs=71.2
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
.+|.++..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...++ +++|+.+|+++++++|+++.+++.
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-PEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCchhHHHHHH
Confidence 3455566666666666666666666666666666666666666666666665553 666666666666666666666666
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG-----DGEIMSQYAKLVW 368 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~ 368 (436)
+| .++...|++++|+..|+++++++|+ +..++..+..+..
T Consensus 83 l~----------------------~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 83 LG----------------------QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HH----------------------HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 66 5555566666666666666666555 4444444444443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-13 Score=108.43 Aligned_cols=121 Identities=18% Similarity=0.397 Sum_probs=110.0
Q ss_pred CCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013800 262 DPGD-GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 262 ~p~~-~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
+|.. ..++..+|.++...++ +++|+.+|++++...|.+..++..++ .++...|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la----------------------~~~~~~~~~~ 60 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAWYNLG----------------------NAYYKQGDYD 60 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHH
T ss_pred CccccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCcHHHHHHHH----------------------HHHHHhCCHH
Confidence 4555 7789999999888875 99999999999999999999999999 8888999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013800 341 GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE 406 (436)
Q Consensus 341 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 406 (436)
+|+.+|++++...|.++.++..+|.++...|+ +++|+..|+++++.+|.+..++..++.++...|
T Consensus 61 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 61 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999 999999999999999999999999999887654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.55 E-value=4.3e-13 Score=146.21 Aligned_cols=217 Identities=10% Similarity=-0.024 Sum_probs=156.9
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
..+..|..+|..+...|++++|+..|.++ +++..|..+|.++.+.|++++|+++|..+.+..++ +.+...+|.+
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~Lafa 1176 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFA 1176 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHH
Confidence 44567777777777788888888877665 67777777888888888888888888777776633 2223346666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHHHHHH
Q 013800 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~~al~ 351 (436)
|.++++ +++ ++.|. ...+...+..+|..+...|++++|...|..+-.- .++.++|++++|++.+++|
T Consensus 1177 YAKl~r-lee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA-- 1247 (1630)
T 1xi4_A 1177 LAKTNR-LAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA-- 1247 (1630)
T ss_pred HHhhcC-HHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHh--
Confidence 666653 653 33332 2334456667888888888888888888754222 7788888888888888888
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-
Q 013800 352 ANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT- 430 (436)
Q Consensus 352 ~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~- 430 (436)
.+..+|..++.++...|+ |..|..+... +..+| +.+..++..|...|.+++|+.++++++.++|.+.+.-+
T Consensus 1248 ---~n~~aWkev~~acve~~E-f~LA~~cgl~-Iiv~~---deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftE 1319 (1630)
T 1xi4_A 1248 ---NSTRTWKEVCFACVDGKE-FRLAQMCGLH-IVVHA---DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 1319 (1630)
T ss_pred ---CCHHHHHHHHHHHhhhhH-HHHHHHHHHh-hhcCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHH
Confidence 556888888888888888 8888877663 44444 45568888999999999999999999999887766543
Q ss_pred hhhhc
Q 013800 431 TANVY 435 (436)
Q Consensus 431 ~an~y 435 (436)
.+.+|
T Consensus 1320 LaiLy 1324 (1630)
T 1xi4_A 1320 LAILY 1324 (1630)
T ss_pred HHHHH
Confidence 55544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.6e-14 Score=114.86 Aligned_cols=102 Identities=22% Similarity=0.107 Sum_probs=92.1
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 279 (436)
.+..+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH
Q 013800 280 HRDQHRALTYFERAALAAPQDSN 302 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~~~~ 302 (436)
++ +++|+..|+++++++|++..
T Consensus 99 g~-~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 99 HN-ANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HH-HHHHHHHHHHHHC-------
T ss_pred CC-HHHHHHHHHHHHHhCcCCCC
Confidence 86 99999999999999998653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=114.06 Aligned_cols=121 Identities=13% Similarity=0.051 Sum_probs=103.1
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCH
Q 013800 260 MADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDL 339 (436)
Q Consensus 260 ~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~ 339 (436)
..+|.++..+..+|.+++..++ +++|+.+|++++.++|+++.++..+| .++...|++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~l~----------------------~~~~~~~~~ 59 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRK-YPEAAACYGRAITRNPLVAVYYTNRA----------------------LCYLKMQQP 59 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCH
T ss_pred CCccccHHHHHHHHHHHHHhCc-HHHHHHHHHHHHhhCcCcHHHHHHHH----------------------HHHHHhcCH
Confidence 3567788899999999888875 99999999999999999999999999 888889999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHH
Q 013800 340 EGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA-----DSHVLAAYACFLWE 404 (436)
Q Consensus 340 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~ 404 (436)
++|+..|+++++++|+++.+++.+|.++..+|+ +++|+..|++++.++|+ +..+...+..+...
T Consensus 60 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 60 EQALADCRRALELDGQSVKAHFFLGQCQLEMES-YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 99999999999998887 56666666665543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.6e-13 Score=106.25 Aligned_cols=74 Identities=14% Similarity=0.038 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
.++.+|.++...|++++|+..|++++..+|.++.++..+|.++...++ +++|+.+++++++.+|++..++..+|
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~a 79 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD-YQKAYEDGCKTVDLKPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 344444444444444444444444444444444444444444444432 44444444444444444444444444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.53 E-value=8e-14 Score=119.53 Aligned_cols=115 Identities=15% Similarity=0.043 Sum_probs=105.2
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDE------------------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
+..+...|+.++..|+|++|+..|++++.. +|.+..++.++|.++..+|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 467889999999999999999999999999 77777999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 013800 260 MADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS-NILAAYACFLWE 313 (436)
Q Consensus 260 ~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~ 313 (436)
+++|.++.+|+.+|.++..+++ +++|+.+|++++.++|++. .+...+..+...
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWK-LDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhc-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999985 9999999999999999998 666677754433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.9e-14 Score=119.70 Aligned_cols=110 Identities=13% Similarity=0.034 Sum_probs=100.4
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPC-------HPL-----LLRNYAQLLQKKGDLYRAEDYYNHATMA---- 261 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~---- 261 (436)
+..+.+.|+.+...|+|++|+..|+++++++|+ +.. +|.++|.++..+|++++|+..|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 356788999999999999999999999999998 444 9999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 262 ---DPGDGESW----MQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 262 ---~p~~~~~~----~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
+|++..+| +++|.++..+++ +++|+.+|+++++++|++..+...+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr-~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGR-GAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCC-HHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 99999999 999999999986 99999999999999998766554444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=113.00 Aligned_cols=96 Identities=18% Similarity=0.098 Sum_probs=87.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 410 (436)
..+...|++++|+..|+++++.+|+++.+|+.+|.++...|+ +++|+..|+++++++|++..++..+|.++...|++++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~ 103 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK-DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA 103 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 788899999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCChh
Q 013800 411 DSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 411 A~~~~~~al~l~p~~~~ 427 (436)
|+..|+++++++|.+..
T Consensus 104 A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 104 ALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHC-------
T ss_pred HHHHHHHHHHhCcCCCC
Confidence 99999999999998753
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-13 Score=117.72 Aligned_cols=113 Identities=16% Similarity=0.091 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMA------------------DPGDGESWMQYAKLVWELHRDQHRALTYFERA 293 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~a 293 (436)
+..+..+|..++..|+|++|+..|.+++.+ +|.+..+|.++|.++..+++ +++|+.+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-~~~A~~~~~~a 89 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD-LHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 467888899999999999999999999887 33334445555555444442 55555555555
Q ss_pred HHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Q 013800 294 ALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG-EIMSQYAKLV 367 (436)
Q Consensus 294 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~ 367 (436)
++++|+++.+++.+| .++..+|++++|+..|+++++++|++. .+...++.+.
T Consensus 90 l~~~p~~~~a~~~~g----------------------~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 90 LKREETNEKALFRRA----------------------KARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHSTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHH----------------------HHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 555555555444444 444444455555555555555554444 3333444333
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=5.2e-13 Score=106.45 Aligned_cols=112 Identities=16% Similarity=0.131 Sum_probs=106.6
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
...+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 278 ELHRDQHRALTYFERAALAAPQDSNILAAYACF 310 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 310 (436)
..++ +++|+.+|+++++.+|++..++..++.+
T Consensus 84 ~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNR-FEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTC-HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhh-HHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 9875 9999999999999999999999988844
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-14 Score=145.58 Aligned_cols=135 Identities=15% Similarity=0.063 Sum_probs=119.6
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
.++..+|..+...|++++|+.+|+++++.+|+++.++.++|.++..+|++++|+..|+++++++|+++.+++++|.++..
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH--HHHcCCHHHHHHHHH---------
Q 013800 279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP--IQSKGDLEGAEEYFS--------- 347 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~g~~~~A~~~~~--------- 347 (436)
+++ +++|+++|+++++++|++..++..++ .+ +..+|++++|++.++
T Consensus 87 ~g~-~~eA~~~~~~al~~~p~~~~~~~~l~----------------------~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 143 (477)
T 1wao_1 87 LGK-FRAALRDYETVVKVKPHDKDAKMKYQ----------------------ECNKIVKQKAFERAIAGDEHKRSVVDSL 143 (477)
T ss_dssp HTC-HHHHHHHHHHHHHHSTTCTTHHHHHH----------------------HHHHHHHHHHHCCC------CCSTTTCC
T ss_pred cCC-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHHHHHHHHHHhccccccchhHhhh
Confidence 985 99999999999999999999999988 44 667789999999998
Q ss_pred --HHHHhCCCC
Q 013800 348 --RAILANPGD 356 (436)
Q Consensus 348 --~al~~~p~~ 356 (436)
+++.++|..
T Consensus 144 ~~~al~~~~~~ 154 (477)
T 1wao_1 144 DIESMTIEDEY 154 (477)
T ss_dssp TTSSCCCCTTC
T ss_pred hhhhccccccc
Confidence 777776643
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-14 Score=140.76 Aligned_cols=215 Identities=9% Similarity=-0.010 Sum_probs=99.9
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
+..|..+|..+.+.|++++|++.|.++ +++..+...+..+...|++++|+.+++.+.+..++ +.+...++.+|.
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~ 105 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHH
Confidence 458999999999999999999999774 46678899999999999999999999999986444 778888898988
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHHHHHHhC
Q 013800 278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFSRAILAN 353 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~~al~~~ 353 (436)
+.++ +.++..+++. | +..+|..+|..+...|.+++|...+...-.- .++.++|++++|++.|+++
T Consensus 106 Klg~-l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA---- 174 (449)
T 1b89_A 106 KTNR-LAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA---- 174 (449)
T ss_dssp ---C-HHHHTTTTTC-----C-----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH----
T ss_pred HhCC-HHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc----
Confidence 8875 9998888853 4 3459999999999999999999999844211 8999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hh
Q 013800 354 PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TA 432 (436)
Q Consensus 354 p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~-~a 432 (436)
.++.+|..+..++...|+ ++.|..+... +..+|+ -...+..+|.+.|++++|+.++++++.+++.+.+.-+ ++
T Consensus 175 -~~~~~Wk~v~~aCv~~~e-f~lA~~~~l~-L~~~ad---~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~ 248 (449)
T 1b89_A 175 -NSTRTWKEVCFACVDGKE-FRLAQMCGLH-IVVHAD---ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELA 248 (449)
T ss_dssp -TCHHHHHHHHHHHHHTTC-HHHHHHTTTT-TTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred -CCchhHHHHHHHHHHcCc-HHHHHHHHHH-HHhCHh---hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 479999999999999999 9999877765 334444 4557888999999999999999999999988877555 44
Q ss_pred hhc
Q 013800 433 NVY 435 (436)
Q Consensus 433 n~y 435 (436)
.+|
T Consensus 249 il~ 251 (449)
T 1b89_A 249 ILY 251 (449)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-12 Score=135.45 Aligned_cols=214 Identities=11% Similarity=0.037 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013800 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAE-DYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERA 293 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~a 293 (436)
......|++++...|.++.+|+.+|..+...|+.++|+ ..|++|+...|.+...|..++.+....+ ++++|..+|+++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~-~~e~aR~iyek~ 404 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNT-KIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHH
Confidence 45678899999999999999999999999999999997 9999999999999999999998888876 499999999999
Q ss_pred HHhC-----------CC-----------CHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHHc-C
Q 013800 294 ALAA-----------PQ-----------DSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQSK-G 337 (436)
Q Consensus 294 l~~~-----------p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~-g 337 (436)
+..- |. ...+|..++.+....|+.+.|+.++.++++. .+.... +
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence 9752 53 3568999999999999999999999988763 122233 4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCChHHHHHH
Q 013800 338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA---DSHVLAAYACFLWETEEDEDDSKS 414 (436)
Q Consensus 338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~ 414 (436)
+++.|..+|+++++..|+++..|..++......|+ .+.|..+|++++...|+ ...+|..+..+....|+.+.+.++
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~-~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNE-ESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 58999999999999999999999999999999999 99999999999999883 567889999999999999999999
Q ss_pred HHHHHhhCCCChhHHh
Q 013800 415 SDQFQQVAPIRQGAVT 430 (436)
Q Consensus 415 ~~~al~l~p~~~~a~~ 430 (436)
++++.+..|+......
T Consensus 564 ~~R~~~~~P~~~~~~~ 579 (679)
T 4e6h_A 564 EKRFFEKFPEVNKLEE 579 (679)
T ss_dssp HHHHHHHSTTCCHHHH
T ss_pred HHHHHHhCCCCcHHHH
Confidence 9999999998655444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=121.28 Aligned_cols=92 Identities=10% Similarity=0.076 Sum_probs=70.2
Q ss_pred hHHHHcCCHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCH----HHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILA---NPGD----GEIMSQYAKLVWELHHDHDKALCYFERAVQASP--ADS----HVLAA 397 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p--~~~----~~~~~ 397 (436)
.++...|++++|+.++++++.+ .+++ ..++.++|.++..+|+ +++|+.++++++.+.+ .+. .++..
T Consensus 74 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 152 (203)
T 3gw4_A 74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD-LAGARQEYEKSLVYAQQADDQVAIACAFRG 152 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 7777778888888888888776 3322 4568888888888888 8999999988886532 222 34678
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCC
Q 013800 398 YACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 398 la~~~~~~g~~~~A~~~~~~al~l~p 423 (436)
+|.++...|++++|+.++++++++..
T Consensus 153 la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 153 LGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 88888899999999999988887743
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-13 Score=127.34 Aligned_cols=187 Identities=13% Similarity=0.042 Sum_probs=157.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 217 AEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP--GDGESWMQYAKLVWELHRDQHRALTYFERAA 294 (436)
Q Consensus 217 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~d~~~A~~~~~~al 294 (436)
|+..+++.++..+.....+..+|.++...|++++|+.++.+++..+| .+.+++..++.++..+++ .+.|.+.++++.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r-~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN-VSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
Confidence 78889988887666777788999999999999999999999999987 889999999999999986 999999999999
Q ss_pred HhCCC----CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 013800 295 LAAPQ----DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG--DLEGAEEYFSRAILANPG--DGEIMSQYAKL 366 (436)
Q Consensus 295 ~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~la~~ 366 (436)
+.+|+ +..++..++.. ++....| ++++|...|+++....|+ ....+++ +
T Consensus 164 ~~~~d~~~~~d~~l~~Laea--------------------~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~ 220 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAES--------------------YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---L 220 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHH--------------------HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---H
T ss_pred hcCccccccchHHHHHHHHH--------------------HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---H
Confidence 99994 33344444422 3444445 999999999999888886 3344444 8
Q ss_pred HHHhcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 367 VWELHHDHDKALCYFERAVQA----------SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 367 ~~~~g~d~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
+.++|+ +++|...++.+++. +|+++.++.+++.+...+|+ +|.+++.++.+..|+++....
T Consensus 221 ~~~~g~-~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 221 HLQQRN-IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHHTC-HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HHHcCC-HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 999999 99999999987776 58899999999999999997 899999999999999886544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.1e-13 Score=111.45 Aligned_cols=112 Identities=19% Similarity=0.118 Sum_probs=76.6
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH---PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 272 (436)
.....+..+|..+...|++++|+.+|+++++.+|++ ..++..+|.++...|++++|+.+++++++.+|.++.+++.+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 455666677777777777777777777777777665 56666777777777777777777777777777666666677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 273 a~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
|.++...++ +++|+.+|+++++++|++..++..++
T Consensus 106 a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 106 SQALEKLGR-LDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHTC-HHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 766666653 66677677666666666666666555
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-13 Score=120.33 Aligned_cols=157 Identities=14% Similarity=0.038 Sum_probs=127.1
Q ss_pred hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHcCC
Q 013800 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA------DPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~d 282 (436)
+..|++++|++.++......+....++..+|.++...|++++|+.++++++.+ .+....++..+|.++...++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN- 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC-
Confidence 45699999999665554433356789999999999999999999999999994 44457789999999999875
Q ss_pred HHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC-
Q 013800 283 QHRALTYFERAALA---APQD----SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP- 354 (436)
Q Consensus 283 ~~~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p- 354 (436)
+++|+.++++++++ .+++ ..++.++| .++...|++++|+.++++++.+.+
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~al~~~~~ 139 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVA----------------------TVALHFGDLAGARQEYEKSLVYAQQ 139 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH----------------------HHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHH----------------------HHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 99999999999998 4433 45567777 888889999999999999997632
Q ss_pred -CC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013800 355 -GD----GEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389 (436)
Q Consensus 355 -~~----~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p 389 (436)
.+ ..++.++|.++...|+ +++|+.++++++++..
T Consensus 140 ~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 140 ADDQVAIACAFRGLGDLAQQEKN-LLEAQQHWLRARDIFA 178 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHH
Confidence 22 3456899999999999 9999999999998753
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-13 Score=115.78 Aligned_cols=110 Identities=15% Similarity=0.047 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------C-----HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQ-------D-----SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~-------~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 335 (436)
.+..+|..++..++ |++|+..|+++++++|+ + ..+|.++| .++..
T Consensus 13 ~~~~~G~~l~~~g~-~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g----------------------~al~~ 69 (159)
T 2hr2_A 13 LALSDAQRQLVAGE-YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLA----------------------EALAG 69 (159)
T ss_dssp HHHHHHHHHHHHTC-HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHH----------------------HHHHH
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHH----------------------HHHHH
Confidence 34444555555443 55555555555555555 3 33889999 88889
Q ss_pred cCCHHHHHHHHHHHHHh-------CCCCHHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 336 KGDLEGAEEYFSRAILA-------NPGDGEIM----SQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 336 ~g~~~~A~~~~~~al~~-------~p~~~~~~----~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
+|+|++|+.+|.++|++ +|++..+| +++|.++..+|+ +++|+..|+++++++|++..+...+..+
T Consensus 70 Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr-~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGR-GAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 99999999999999999 99999999 999999999999 9999999999999999877554444433
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-14 Score=146.95 Aligned_cols=136 Identities=15% Similarity=0.087 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
+..+..+|.++...|++++|++.|+++++++|.+..++..+|.++..+++ +++|+.+|+++++++|++..+++++|
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~lg--- 81 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC-YGYALGDATRAIELDKKYIKGYYRRA--- 81 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHSCTTCHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCCHHHHHHHH---
Confidence 45567788899999999999999999999999999999999999999985 99999999999999999999999999
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHhcCCHHHHHHHHH-------
Q 013800 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL--VWELHHDHDKALCYFE------- 382 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~d~~~A~~~~~------- 382 (436)
.++..+|++++|+..|+++++++|++..++..++.+ +...|+ +++|++.++
T Consensus 82 -------------------~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~-~~~A~~~~~~~~~~~~ 141 (477)
T 1wao_1 82 -------------------ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA-FERAIAGDEHKRSVVD 141 (477)
T ss_dssp -------------------HHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHH-HCCC------CCSTTT
T ss_pred -------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhccccccchhHh
Confidence 888999999999999999999999999999999998 888899 999999999
Q ss_pred ----HHHHhCCCC
Q 013800 383 ----RAVQASPAD 391 (436)
Q Consensus 383 ----~al~~~p~~ 391 (436)
+++.+.|+.
T Consensus 142 ~~~~~al~~~~~~ 154 (477)
T 1wao_1 142 SLDIESMTIEDEY 154 (477)
T ss_dssp CCTTSSCCCCTTC
T ss_pred hhhhhhccccccc
Confidence 777777653
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.1e-13 Score=110.23 Aligned_cols=117 Identities=19% Similarity=0.091 Sum_probs=72.6
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013800 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNI 303 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~ 303 (436)
..|.+...++.+|..+...|++++|+..|+++++.+|++ ..++..+|.++...++ +++|+.+|+++++++|++..+
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED-YDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTSCCHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHhhCccCHHH
Confidence 355666677777777777777777777777777666665 5566666666555543 666666666666666666555
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 304 LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL 366 (436)
Q Consensus 304 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (436)
++.+| .++...|++++|+.+|+++++++|++..++..++.+
T Consensus 102 ~~~~a----------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 102 LYRRS----------------------QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHH----------------------HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHH----------------------HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 55555 555555666666666666666666655555555544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-14 Score=138.71 Aligned_cols=159 Identities=13% Similarity=-0.040 Sum_probs=81.2
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
..+..+..+..+|.+++..|++++|+..|++++.+.|.+.. +...+ ++.++...+. ..++++
T Consensus 174 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~-~~~~~~~~l~---------~~~~~n 235 (338)
T 2if4_A 174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYG-KYQDMALAVK---------NPCHLN 235 (338)
T ss_dssp HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCH-HHHHHHHHHH---------THHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcc-cHHHHHHHHH---------HHHHHH
Confidence 33444566778888888888888888888888887776541 11111 2344433322 135667
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQ 386 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~ 386 (436)
+| .++..+|+|++|+.+|+++++++|++..+|+++|.++..+|+ +++|+..|+++++
T Consensus 236 la----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~-~~~A~~~l~~al~ 292 (338)
T 2if4_A 236 IA----------------------ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQ-MDSARDDFRKAQK 292 (338)
T ss_dssp HH----------------------HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHTTC
T ss_pred HH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence 77 677777777777777777777777777777777777777777 7777777777777
Q ss_pred hCCCCHHHHHHHHHH-HHHCCChHHHHHHHHHHHhhCCCCh
Q 013800 387 ASPADSHVLAAYACF-LWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 387 ~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~l~p~~~ 426 (436)
++|++..++..++.+ ....+..+++...|++++...|...
T Consensus 293 l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 293 YAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -----------------------------------------
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 777777777777776 3445566677777777777776654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.7e-14 Score=135.07 Aligned_cols=138 Identities=18% Similarity=0.076 Sum_probs=91.4
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----------------LLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
+..+..+|+.++..|++++|+.+|++++...|++. .+++++|.+|..+|++++|+.+|+++++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45688899999999999999999999999999876 4899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH-HHHcCCH
Q 013800 261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP-IQSKGDL 339 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~g~~ 339 (436)
++|++..+|+++|.++..+++ +++|+.+|+++++++|++..++..++ .+ ....+..
T Consensus 259 ~~p~~~~a~~~lg~a~~~~g~-~~~A~~~l~~al~l~p~~~~a~~~L~----------------------~l~~~~~~~~ 315 (338)
T 2if4_A 259 EEEKNPKALFRRGKAKAELGQ-MDSARDDFRKAQKYAPDDKAIRRELR----------------------ALAEQEKALY 315 (338)
T ss_dssp HCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHTTC---------------------------------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCCHHHHHHHH----------------------HHHHHHHHHH
Confidence 999999999999999999875 99999999999999999999999888 44 3355778
Q ss_pred HHHHHHHHHHHHhCCCCHH
Q 013800 340 EGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 340 ~~A~~~~~~al~~~p~~~~ 358 (436)
+++...|.+++...|.++.
T Consensus 316 ~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 316 QKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHhhCCCCCCCC
Confidence 8888999999999887653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-12 Score=105.52 Aligned_cols=112 Identities=11% Similarity=0.076 Sum_probs=103.6
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQY 272 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 272 (436)
.++..+|..+...|++++|+..|+++++.+|++. .+++.+|.++...|++++|+.+|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3578899999999999999999999999999988 899999999999999999999999999999999 8999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 273 a~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
|.++...++ +++|+..|+++++..|++..+...+..+.
T Consensus 83 a~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 83 GLSQYGEGK-NTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 999999875 99999999999999999998877666433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.7e-13 Score=105.28 Aligned_cols=106 Identities=13% Similarity=0.143 Sum_probs=101.5
Q ss_pred CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH
Q 013800 297 APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDK 376 (436)
Q Consensus 297 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~ 376 (436)
+|++..++..+| .++...|++++|+.+|+++++.+|.+..++..+|.++...|+ +++
T Consensus 2 ~p~~~~~~~~~~----------------------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~-~~~ 58 (112)
T 2kck_A 2 VDQNPEEYYLEG----------------------VLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER-YEE 58 (112)
T ss_dssp CCSSTTGGGGHH----------------------HHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-HHH
T ss_pred CCCcHHHHHHHH----------------------HHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccC-HHH
Confidence 678888888899 888999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHC-CChHHHHHHHHHHHhhCCCC
Q 013800 377 ALCYFERAVQASPA--DSHVLAAYACFLWET-EEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 377 A~~~~~~al~~~p~--~~~~~~~la~~~~~~-g~~~~A~~~~~~al~l~p~~ 425 (436)
|+..|+++++..|. +..++..+|.++..+ |++++|++++++++...|..
T Consensus 59 A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 59 AVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999999999999 999999999999999 99999999999999998865
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-12 Score=106.23 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q 013800 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD-------SNI 303 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~-------~~~ 303 (436)
.+..+..+|.++...|++++|+.+|++++..+|.++.++..+|.++...++ +++|+.+|++++...|.+ ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD-YNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 457788999999999999999999999999999999999999999888875 999999999999998876 778
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 013800 304 LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH 372 (436)
Q Consensus 304 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 372 (436)
+..+| .++...|++++|+.+|+++++..| ++..+..++.+....++
T Consensus 82 ~~~la----------------------~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 82 YARIG----------------------NSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHH----------------------HHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 88888 888889999999999999999998 58888888887766543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.4e-12 Score=104.22 Aligned_cols=67 Identities=10% Similarity=0.069 Sum_probs=32.8
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAY 398 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~l 398 (436)
.++...|++++|+..|++++..+|++ +.+++.+|.++..+|+ +++|+..|++++...|++..+...+
T Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 47 ESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGK-NTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCChHHHHHH
Confidence 44444445555555555555555544 4445555555555554 5555555555555555444443333
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.7e-13 Score=114.02 Aligned_cols=100 Identities=13% Similarity=0.150 Sum_probs=90.7
Q ss_pred hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDL----------YRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
.+.+.|++|+..|+++++++|+++++|+++|.++...+++ ++|+..|+++++++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4557899999999999999999999999999999998875 599999999999999999999999999998
Q ss_pred Hc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 279 LH----------RDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 279 ~~----------~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
++ +++++|+.+|++|++++|++...+..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 75 3599999999999999999976665544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-12 Score=105.51 Aligned_cols=117 Identities=12% Similarity=0.150 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHH
Q 013800 265 DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEE 344 (436)
Q Consensus 265 ~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~ 344 (436)
.+..+..+|.++...+. +++|+.+|++++..+|.+..++..+| .++...|++++|+.
T Consensus 3 ~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la----------------------~~~~~~~~~~~A~~ 59 (131)
T 1elr_A 3 QALKEKELGNDAYKKKD-FDTALKHYDKAKELDPTNMTYITNQA----------------------AVYFEKGDYNKCRE 59 (131)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCccHHHHHHHH----------------------HHHHHhccHHHHHH
Confidence 45788999999988874 99999999999999999999999999 88889999999999
Q ss_pred HHHHHHHhCCCC-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013800 345 YFSRAILANPGD-------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE 406 (436)
Q Consensus 345 ~~~~al~~~p~~-------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 406 (436)
+|++++...|.+ ..+++.+|.++...|+ +++|+..|+++++..| +..++..++.+...++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 60 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEK-YKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 999999998877 8999999999999999 9999999999999999 5888888888766544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-12 Score=102.18 Aligned_cols=104 Identities=13% Similarity=0.090 Sum_probs=98.3
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG--DGESWMQYA 273 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la 273 (436)
.....|..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|+++++..|. +..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHH-cCCHHHHHHHHHHHHHhCCCC
Q 013800 274 KLVWEL-HRDQHRALTYFERAALAAPQD 300 (436)
Q Consensus 274 ~~~~~~-~~d~~~A~~~~~~al~~~p~~ 300 (436)
.++... ++ +++|+.++++++...|.+
T Consensus 84 ~~~~~~~~~-~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 84 DALRYIEGK-EVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHTTCSSC-SHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCC-HHHHHHHHHHHhhcccCC
Confidence 999888 85 999999999999999875
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-12 Score=126.70 Aligned_cols=140 Identities=18% Similarity=0.132 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
+..+..+|..++..|++++|+..|++++++.+..+ +....++...++|.+..++.++|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~nla--- 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-------------------AAAEDADGAKLQPVALSCVLNIG--- 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-------------------HHSCHHHHGGGHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-------------------cccChHHHHHHHHHHHHHHHHHH---
Confidence 45688899999999999999999999988533211 01112333345555666677777
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013800 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~ 391 (436)
.++..+|++++|+.+|+++++++|+++.+++.+|.++..+|+ +++|+..|+++++++|++
T Consensus 281 -------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~eA~~~l~~Al~l~P~~ 340 (370)
T 1ihg_A 281 -------------------ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE-YDQALADLKKAQEIAPED 340 (370)
T ss_dssp -------------------HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC
T ss_pred -------------------HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCC
Confidence 666677777777777777777777777777777777777777 777777777777777777
Q ss_pred HHHHHHHHHHHHHCCChHHHHH
Q 013800 392 SHVLAAYACFLWETEEDEDDSK 413 (436)
Q Consensus 392 ~~~~~~la~~~~~~g~~~~A~~ 413 (436)
..++..++.++..+++++++.+
T Consensus 341 ~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 341 KAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776666644
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-12 Score=127.62 Aligned_cols=201 Identities=11% Similarity=0.012 Sum_probs=163.8
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----------------LLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
+.+....+..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|++++.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34556667778888999999999999999888642 3688999999999999999999999998
Q ss_pred hCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCchHHHHHHHHHH
Q 013800 261 ADPGDG------ESWMQYAKLVWELHRDQHRALTYFERAALAAPQ------DSNILAAYACFLWEMEDDGEDDKAQEEHI 328 (436)
Q Consensus 261 ~~p~~~------~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 328 (436)
..+... .+...++.++...+ ++++|+.++++++...+. ...++..+|
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la-------------------- 142 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPD-SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLA-------------------- 142 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCS-CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHH--------------------
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH--------------------
Confidence 765532 23445666655554 599999999999886432 356777888
Q ss_pred HHhHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CC----HHHH
Q 013800 329 QVLPIQSKGDLEGAEEYFSRAILA------NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP---AD----SHVL 395 (436)
Q Consensus 329 ~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p---~~----~~~~ 395 (436)
.++...|+|++|+.++++++.. .+....++..++.++..+|+ +++|..++++++.+.+ .. ..++
T Consensus 143 --~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 219 (434)
T 4b4t_Q 143 --TLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRN-LAKSKASLTAARTAANSIYCPTQTVAELD 219 (434)
T ss_dssp --HHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred --HHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHhhcCCCchHHHHHHH
Confidence 8889999999999999999876 23446799999999999999 9999999999987642 22 2567
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 396 AAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 396 ~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
..+|.++...|++++|..+|.+++...
T Consensus 220 ~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 220 LMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 788899999999999999999998753
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=110.48 Aligned_cols=105 Identities=15% Similarity=0.196 Sum_probs=81.5
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 243 QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR---------DQHRALTYFERAALAAPQDSNILAAYACFLWE 313 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---------d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 313 (436)
.+.+.+++|+..++++++++|+++.+|.++|.++...++ .+++|+..|+++++++|++..+|+++|.++..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 356779999999999999999999999999999998864 13599999999999999999999999955544
Q ss_pred ccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 314 MEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
.|...- ......|++++|+.+|++|++++|++..
T Consensus 93 lg~l~P-----------~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 93 FAFLTP-----------DETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHCC-----------CHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred hcccCc-----------chhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 321000 0011125788888888888888887653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-12 Score=126.77 Aligned_cols=122 Identities=11% Similarity=0.047 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHH
Q 013800 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYF 346 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~ 346 (436)
..+..+|..++..++ |++|+.+|++++++.+... +....
T Consensus 224 ~~~~~~g~~~~~~g~-~~~Ai~~y~kAl~~~~~~~----------------------------------------~~~~~ 262 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQN-WEMAIKKYTKVLRYVEGSR----------------------------------------AAAED 262 (370)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHH----------------------------------------HHSCH
T ss_pred HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhcCc----------------------------------------cccCh
Confidence 457788989888875 9999999999998643211 11123
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013800 347 SRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 347 ~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 426 (436)
..+...+|.+..+|+++|.++..+|+ +++|+.+|+++++++|++..+++.+|.++..+|++++|+..|++++++.|...
T Consensus 263 ~~~~~~~~~~~~~~~nla~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~ 341 (370)
T 1ihg_A 263 ADGAKLQPVALSCVLNIGACKLKMSD-WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341 (370)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 44455677788999999999999999 99999999999999999999999999999999999999999999999999877
Q ss_pred hHHh
Q 013800 427 GAVT 430 (436)
Q Consensus 427 ~a~~ 430 (436)
....
T Consensus 342 ~~~~ 345 (370)
T 1ihg_A 342 AIQA 345 (370)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.9e-13 Score=107.27 Aligned_cols=98 Identities=15% Similarity=0.184 Sum_probs=87.0
Q ss_pred hCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013800 210 NFDDSAEAEEYYKRMIDE---YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
..|++++|+.+|+++++. +|++..++..+|.++...|++++|+.+|+++++++|+++.+++.+|.++...++ +++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR-YEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC-HHHH
Confidence 358899999999999999 588889999999999999999999999999999999999999999999999985 9999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHH
Q 013800 287 LTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 287 ~~~~~~al~~~p~~~~~~~~la 308 (436)
+.+|++++...|+++.+.....
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHH
Confidence 9999999999999988765444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-11 Score=132.83 Aligned_cols=207 Identities=11% Similarity=0.008 Sum_probs=154.2
Q ss_pred CChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC---------------------------HHHHHHHHHHHHHcCCH
Q 013800 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH---------------------------PLLLRNYAQLLQKKGDL 248 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---------------------------~~~~~~la~~~~~~g~~ 248 (436)
++...|..+|.++.+.|++++|+++|..+.+..++. ...+..+|..+...|+|
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Y 1211 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMY 1211 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCH
Confidence 445789999999999999999999999988766431 22345566666666666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHH-
Q 013800 249 YRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEH- 327 (436)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~- 327 (436)
++|+.+|.++ ..|..+|.++.++++ +++|++++++| .+..+|...+.++.+.|++..|.......
T Consensus 1212 eeA~~~Y~kA--------~ny~rLA~tLvkLge-~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Ii 1277 (1630)
T 1xi4_A 1212 DAAKLLYNNV--------SNFGRLASTLVHLGE-YQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV 1277 (1630)
T ss_pred HHHHHHHHhh--------hHHHHHHHHHHHhCC-HHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 7776666664 366666767666654 77777777766 45566776666666666666666655321
Q ss_pred -----HHH--hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCC-----CCHH
Q 013800 328 -----IQV--LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE--LHHDHDKALCYFERAVQASP-----ADSH 393 (436)
Q Consensus 328 -----~~~--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~d~~~A~~~~~~al~~~p-----~~~~ 393 (436)
+.. ..|...|.|++|+.++++++.+++.+...+..+|.++.+ -++ ..+++++|...+.+.| .+..
T Consensus 1278 v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pek-lmEhlk~f~~rini~k~~r~~e~~~ 1356 (1630)
T 1xi4_A 1278 VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK-MREHLELFWSRVNIPKVLRAAEQAH 1356 (1630)
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHH-HHHHHHHHHHhcccchHhHHHHHHH
Confidence 111 678899999999999999999999999999888888765 345 7788888888887776 6778
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHH
Q 013800 394 VLAAYACFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~~~ 417 (436)
.|..+..+|.+-|+++.|+.....
T Consensus 1357 lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1357 LWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHh
Confidence 899999999999999999854443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-12 Score=105.86 Aligned_cols=98 Identities=13% Similarity=0.262 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013800 282 DQHRALTYFERAALA---APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 282 d~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
++++|+.+|++++++ +|++..++..+| .++..+|++++|+.+|+++++++|+++.
T Consensus 5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg----------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~ 62 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLG----------------------STFRTLGEYRKAEAVLANGVKQFPNHQA 62 (117)
T ss_dssp --CCCHHHHHHHHSSCCCHHHHHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHHHcCCCCccHHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence 588999999999998 588888999999 8888999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 359 IMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFL 402 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 402 (436)
+++++|.++..+|+ +++|+..|++++...|+++.+......+.
T Consensus 63 ~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 63 LRVFYAMVLYNLGR-YEQGVELLLKIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp HHHHHHHHHHHHTC-HHHHHHHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 99999999999999 99999999999999999887654443333
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=7e-12 Score=105.38 Aligned_cols=132 Identities=15% Similarity=0.113 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD------ 300 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------ 300 (436)
.++..+|.++...|++++|+.++++++++.+.. ..++..+|.++...++ +++|+.++++++++.+..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE-FETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCCcHHH
Confidence 455666666666666666666666666553321 1345555555555543 555555555555543221
Q ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCH
Q 013800 301 SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG------DGEIMSQYAKLVWELHHDH 374 (436)
Q Consensus 301 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~d~ 374 (436)
..++..+| .++...|++++|+.++++++++.+. ...++..+|.++...|+ +
T Consensus 89 ~~~~~~l~----------------------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~ 145 (164)
T 3ro3_A 89 AQSCYSLG----------------------NTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN-H 145 (164)
T ss_dssp HHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-H
T ss_pred HHHHHHHH----------------------HHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC-H
Confidence 23334444 5555556666666666665554211 13455556666666666 6
Q ss_pred HHHHHHHHHHHHhC
Q 013800 375 DKALCYFERAVQAS 388 (436)
Q Consensus 375 ~~A~~~~~~al~~~ 388 (436)
++|+.++++++++.
T Consensus 146 ~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 146 DQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.8e-12 Score=104.79 Aligned_cols=135 Identities=12% Similarity=0.118 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCH
Q 013800 266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS------NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDL 339 (436)
Q Consensus 266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~ 339 (436)
..++..+|.+++..++ +++|+.++++++++.+... .++..+| .++...|++
T Consensus 9 ~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~----------------------~~~~~~g~~ 65 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGN-FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLG----------------------NAYIFLGEF 65 (164)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH----------------------HHHHHTTCH
T ss_pred HHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH----------------------HHHHHcCCH
Confidence 4578889999988875 9999999999999865422 3566677 888899999
Q ss_pred HHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCC
Q 013800 340 EGAEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPA------DSHVLAAYACFLWETEE 407 (436)
Q Consensus 340 ~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~ 407 (436)
++|+.++++++++.+.. ..++.++|.++...|+ +++|+.++++++.+.+. ...++..+|.++...|+
T Consensus 66 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 144 (164)
T 3ro3_A 66 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 144 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC
Confidence 99999999999876543 6689999999999999 99999999999987432 24678999999999999
Q ss_pred hHHHHHHHHHHHhhCCC
Q 013800 408 DEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 408 ~~~A~~~~~~al~l~p~ 424 (436)
+++|++++++++++...
T Consensus 145 ~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 145 HDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.9e-13 Score=132.40 Aligned_cols=217 Identities=13% Similarity=0.053 Sum_probs=130.3
Q ss_pred CCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013800 179 PVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA 258 (436)
Q Consensus 179 p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a 258 (436)
.+++..|+..+....+ .+.....++.++.+.|++.+++++++. | +..+|..+|..+...|+|++|..+|.++
T Consensus 77 ~EeAi~yl~~ark~~~--~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 77 WEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ----------------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCc--cchhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 3355555655554321 234455566677777777777766642 4 3347778888888888888888888766
Q ss_pred HHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHH-------HHH-
Q 013800 259 TMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEH-------IQV- 330 (436)
Q Consensus 259 l~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-------~~~- 330 (436)
..|..+|.++..+++ |++|++.++++ .++.+|...+.++...|+++.|....... ...
T Consensus 149 --------~n~~~LA~~L~~Lg~-yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv 214 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGE-YQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELI 214 (449)
T ss_dssp --------TCHHHHHHHHHTTTC-HHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHH
T ss_pred --------hhHHHHHHHHHHhcc-HHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHH
Confidence 467777888777764 88888888877 46777888878888888777775433311 000
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE--LHHDHDKALCYFERAVQASP-----ADSHVLAAYACFLW 403 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~d~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~ 403 (436)
.+|.+.|++++|+.++++++.+++.+..++..+|.++.+ .++ ..+.++.|...+.+.| .+...|..+..+|.
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k-~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK-MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHH-HHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999998864 445 6677777777777777 77789999999999
Q ss_pred HCCChHHHHHHHHHH
Q 013800 404 ETEEDEDDSKSSDQF 418 (436)
Q Consensus 404 ~~g~~~~A~~~~~~a 418 (436)
+.++++.|+....+.
T Consensus 294 ~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 294 KYEEYDNAIITMMNH 308 (449)
T ss_dssp HTTCHHHHHHHHHHS
T ss_pred hhchHHHHHHHHHhC
Confidence 999999998765443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.32 E-value=6.5e-11 Score=111.71 Aligned_cols=187 Identities=11% Similarity=-0.008 Sum_probs=149.8
Q ss_pred hHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 182 PPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP--CHPLLLRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
+..++..-+.... .....+..+|.++...|++++|++++.+.+..+| ++.+++..++.++..+|+.+.|.+.++++.
T Consensus 85 a~~~l~~l~~~~~-~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDKQ-NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTSC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455665554443 3455667899999999999999999999999987 788999999999999999999999999999
Q ss_pred HhCCC----CHHHHHHH--HHHHHHHc-CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 013800 260 MADPG----DGESWMQY--AKLVWELH-RDQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGEDDKAQEEHIQV 330 (436)
Q Consensus 260 ~~~p~----~~~~~~~l--a~~~~~~~-~d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 330 (436)
+.+|+ +-.++..+ |.+....+ +++.+|...|+++.+..|+ ....++
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLl------------------------- 218 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLL------------------------- 218 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHH-------------------------
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHH-------------------------
Confidence 99993 23333444 44455554 2599999999999888886 223333
Q ss_pred hHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILA----------NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAA 397 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~ 397 (436)
.++..+|++++|...++.+++. +|+++.++.+++.+...+|+ +|.+++.++.+.+|+++.+...
T Consensus 219 n~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk---~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 219 NLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL---DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC---TTHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh---HHHHHHHHHHHhCCCChHHHHH
Confidence 3456789999999999987776 58899999999999999987 7899999999999999876543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.22 E-value=4.9e-10 Score=117.62 Aligned_cols=208 Identities=9% Similarity=-0.028 Sum_probs=181.5
Q ss_pred HHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013800 183 PMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAE-EYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
...|.+++...+ ..+..|+..+......|+.++|. ..|++++...|.+...|+.++.+....|++++|...|++++..
T Consensus 329 ~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 329 TYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 356888888888 68999999999999999999997 9999999999999999999999999999999999999999975
Q ss_pred -----------CCC-----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccC-c
Q 013800 262 -----------DPG-----------DGESWMQYAKLVWELHRDQHRALTYFERAALA-APQDSNILAAYACFLWEMED-D 317 (436)
Q Consensus 262 -----------~p~-----------~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~-~ 317 (436)
.|. ...+|..++.+....++ .+.|...|.+|++. .+....+|...+.+....++ .
T Consensus 408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~-l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG-LAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC
T ss_pred HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH
Confidence 253 35689999988888876 99999999999998 55567788888888877765 8
Q ss_pred hHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013800 318 GEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANP---GDGEIMSQYAKLVWELHHDHDKALCYFE 382 (436)
Q Consensus 318 ~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~d~~~A~~~~~ 382 (436)
+.|..+++..++. ......|+.+.|..+|++++...| ....+|..+...-...|+ .+.+...++
T Consensus 487 e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~-~~~~~~v~~ 565 (679)
T 4e6h_A 487 KTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS-LNSVRTLEK 565 (679)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHH
Confidence 9999999988887 444567999999999999999988 356788888888889999 999999999
Q ss_pred HHHHhCCCCHH
Q 013800 383 RAVQASPADSH 393 (436)
Q Consensus 383 ~al~~~p~~~~ 393 (436)
++.+..|++..
T Consensus 566 R~~~~~P~~~~ 576 (679)
T 4e6h_A 566 RFFEKFPEVNK 576 (679)
T ss_dssp HHHHHSTTCCH
T ss_pred HHHHhCCCCcH
Confidence 99999998753
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-10 Score=93.28 Aligned_cols=98 Identities=12% Similarity=0.076 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 285 RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYA 364 (436)
Q Consensus 285 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 364 (436)
+|+..|+++++.+|+++.+++.+| .++...|++++|+.+|+++++++|++..+|+.+|
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 60 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLG----------------------KTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHH----------------------HHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 578899999999999999999999 8888899999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHC
Q 013800 365 KLVWELHHDHDKALCYFERAVQASPA--DSHVLAAYACFLWET 405 (436)
Q Consensus 365 ~~~~~~g~d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~ 405 (436)
.++...|+ +++|+..|++++++.|. +......+...+..+
T Consensus 61 ~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l 102 (115)
T 2kat_A 61 KTLQGQGD-RAGARQAWESGLAAAQSRGDQQVVKELQVFLRRL 102 (115)
T ss_dssp HHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCC-HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHh
Confidence 99999999 99999999999998874 345555555544443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.9e-10 Score=91.12 Aligned_cols=93 Identities=16% Similarity=0.113 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAAL 295 (436)
Q Consensus 216 ~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~ 295 (436)
+|+..|+++++.+|+++.+++.+|.++...|++++|+.+|+++++++|.+..+|+.+|.++...++ +++|+..|+++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD-RAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999999999999999999999875 9999999999999
Q ss_pred hCCC--CHHHHHHHHH
Q 013800 296 AAPQ--DSNILAAYAC 309 (436)
Q Consensus 296 ~~p~--~~~~~~~la~ 309 (436)
+.|. +......+..
T Consensus 82 ~~~~~~~~~~~~~l~~ 97 (115)
T 2kat_A 82 AAQSRGDQQVVKELQV 97 (115)
T ss_dssp HHHHHTCHHHHHHHHH
T ss_pred hccccccHHHHHHHHH
Confidence 9874 4455555543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.9e-11 Score=95.69 Aligned_cols=86 Identities=13% Similarity=0.058 Sum_probs=81.0
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD------SHVLAAYACFLWE 404 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~ 404 (436)
.++...|++++|+..|+++++++|.++.+++++|.++..+|+ +++|+..|+++++++|++ ..++..++.++..
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 90 (111)
T 2l6j_A 12 NSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGE-YTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGA 90 (111)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999 999999999999999999 8899999999999
Q ss_pred CCChHHHHHHHHH
Q 013800 405 TEEDEDDSKSSDQ 417 (436)
Q Consensus 405 ~g~~~~A~~~~~~ 417 (436)
+|++++|+..+++
T Consensus 91 ~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 91 VGSVQIPVVEVDE 103 (111)
T ss_dssp HHCCCCCSSSSSS
T ss_pred HHhHhhhHhHHHH
Confidence 9998888766553
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.16 E-value=6e-10 Score=110.28 Aligned_cols=168 Identities=11% Similarity=0.016 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG-----------------ESWMQYAKLVWELHRDQHRALTYFERAAL 295 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~~~d~~~A~~~~~~al~ 295 (436)
......|..+...|+|++|++.|.++++..|... .++..+|.+|...++ +++|+.++++++.
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~-~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA-KDKLREFIPHSTE 83 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 4566788889999999999999999999988642 468899999999985 9999999999998
Q ss_pred hCCCCHHH------HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHH
Q 013800 296 AAPQDSNI------LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP------GDGEIMSQY 363 (436)
Q Consensus 296 ~~p~~~~~------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l 363 (436)
..+..... ...++ .++...|++++|+.++++++...+ ....++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~l~----------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIE----------------------KFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKL 141 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHH----------------------HHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHH----------------------HHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 87654322 23344 666778999999999999987632 336789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 364 AKLVWELHHDHDKALCYFERAVQAS------PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 364 a~~~~~~g~d~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
|.++...|+ |.+|+..+++++... +....++..++.++..+|++++|..+|++++.+.+.
T Consensus 142 a~~~~~~g~-~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 142 ATLHYQKKQ-YKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp HHHHHHHTC-HHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccC-hHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 999999999 999999999998752 334578999999999999999999999999987543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.2e-11 Score=95.39 Aligned_cols=92 Identities=13% Similarity=0.029 Sum_probs=66.1
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GESWMQ 271 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 271 (436)
...|..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34567777777777777777777777777777777777777777777777777777777777777777 667777
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q 013800 272 YAKLVWELHRDQHRALTYF 290 (436)
Q Consensus 272 la~~~~~~~~d~~~A~~~~ 290 (436)
+|.++...+. +++|+..+
T Consensus 84 ~~~~~~~~~~-~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGS-VQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHC-CCCCSSSS
T ss_pred HHHHHHHHHh-HhhhHhHH
Confidence 7777666653 55554443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.14 E-value=4.8e-10 Score=85.12 Aligned_cols=79 Identities=20% Similarity=0.344 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW 312 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 312 (436)
.+++.+|.++...|++++|+.+|+++++.+|.++.++..+|.++...++ +++|+.+|+++++++|++..++..++.++.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4444444444455555555555555555555444445555544444432 555555555555555555555544444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.14 E-value=5.4e-10 Score=84.83 Aligned_cols=75 Identities=17% Similarity=0.331 Sum_probs=71.4
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE 406 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 406 (436)
.++...|++++|+.+|+++++.+|+++.++..+|.++...|+ +++|+..|+++++++|.+..++..++.++..+|
T Consensus 17 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 17 NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 888899999999999999999999999999999999999999 999999999999999999999999999987754
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.6e-09 Score=98.64 Aligned_cols=183 Identities=15% Similarity=0.061 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH-------HHcC--------------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLL-------QKKG--------------DLYRAEDYYNHATMADPGDGESWMQYA 273 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~-------~~~g--------------~~~~A~~~~~~al~~~p~~~~~~~~la 273 (436)
.-.+.+++-.+..+|++...+...|..| .+.. ++..|...|.++... -..|
T Consensus 49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y--------~~ra 120 (301)
T 3u64_A 49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY--------ALSS 120 (301)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH--------HHHH
T ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH--------HHHH
Confidence 4567788888999999986655544444 3221 234555555555331 1112
Q ss_pred HHHHHHcCCHHHHHH-----HHHHH-HHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHH------HcCCHHH
Q 013800 274 KLVWELHRDQHRALT-----YFERA-ALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ------SKGDLEG 341 (436)
Q Consensus 274 ~~~~~~~~d~~~A~~-----~~~~a-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~g~~~~ 341 (436)
.+ ....+ +.+++. -+.++ .+.+|+++++++..|..... ++-. ..+...+
T Consensus 121 L~-~~~~~-~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss-----------------~a~~~~gg~~Al~~l~~ 181 (301)
T 3u64_A 121 LE-TAYPG-FTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVA-----------------AFALTPLGSALPDTVHA 181 (301)
T ss_dssp HH-HHSTT-HHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHH-----------------HHTTSCTTSCCHHHHHH
T ss_pred HH-HhCcc-HHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHH-----------------HHhcCCCChHHHHhHHH
Confidence 11 11122 443333 22333 34578889988888755533 1111 1234578
Q ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHC-CChHHHH
Q 013800 342 AEEYFSRAILANPG--DGEIMSQYAKLVWEL-----HHDHDKALCYFERAVQASPAD-SHVLAAYACFLWET-EEDEDDS 412 (436)
Q Consensus 342 A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~-g~~~~A~ 412 (436)
|...++++++++|+ +..+|..+|.+|... |+ .++|.++|++|++++|+. ..+++.+|..+... |++++|.
T Consensus 182 A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd-~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~ 260 (301)
T 3u64_A 182 AVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGG-MEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFD 260 (301)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCC-HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCC-HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999 677999999999985 77 999999999999999975 99999999999884 9999999
Q ss_pred HHHHHHHhhCCCC
Q 013800 413 KSSDQFQQVAPIR 425 (436)
Q Consensus 413 ~~~~~al~l~p~~ 425 (436)
++++++++.+|..
T Consensus 261 ~~L~kAL~a~p~~ 273 (301)
T 3u64_A 261 EALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHCCGGG
T ss_pred HHHHHHHcCCCCC
Confidence 9999999998874
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.04 E-value=4e-10 Score=87.47 Aligned_cols=91 Identities=13% Similarity=0.099 Sum_probs=80.1
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPL-LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 279 (436)
.+..|..+...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+.+|+++++++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 356788889999999999999999999999999 99999999999999999999999999999999887744
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 013800 280 HRDQHRALTYFERAALAAPQD 300 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~~ 300 (436)
+ .+.+++.+|++++..+|++
T Consensus 75 ~-~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 K-MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp H-HHHHHHHHHCCTTHHHHCC
T ss_pred H-HHHHHHHHHHHHhccCccc
Confidence 2 2788888998888887765
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.6e-09 Score=84.82 Aligned_cols=82 Identities=21% Similarity=0.215 Sum_probs=60.2
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHH
Q 013800 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ--DSNIL 304 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~--~~~~~ 304 (436)
.+|+++.+++.+|.++...|++++|+.+|+++++++|+++.+|+.+|.++...++ +++|+..|++++++.|. +....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDR-TDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhhhcCCchhHH
Confidence 3677888888888888888888888888888888888888888888888877764 88888888888877653 34444
Q ss_pred HHHHH
Q 013800 305 AAYAC 309 (436)
Q Consensus 305 ~~la~ 309 (436)
..+..
T Consensus 81 ~~l~~ 85 (100)
T 3ma5_A 81 SELQD 85 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=6.6e-09 Score=86.54 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 213 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
++++|+.+|+++.+.....+. +|.+|...+.+++|+.+|+++.+. .++.+++++|.+|.
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~ 68 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYE 68 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence 444555555555544322222 444444444444444444444443 34444444444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-09 Score=84.07 Aligned_cols=88 Identities=16% Similarity=0.150 Sum_probs=68.0
Q ss_pred hCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHH
Q 013800 296 AAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHD 375 (436)
Q Consensus 296 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~ 375 (436)
.+|+++.+++.+| .++...|++++|+.+|+++++++|+++.+|+.+|.++..+|+ ++
T Consensus 2 ~~p~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~ 58 (100)
T 3ma5_A 2 EDPEDPFTRYALA----------------------QEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDR-TD 58 (100)
T ss_dssp ---CCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-HH
T ss_pred CCccCHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HH
Confidence 3688888888888 888888899999999999999999988899999999999988 89
Q ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCC
Q 013800 376 KALCYFERAVQASPA--DSHVLAAYACFLWETE 406 (436)
Q Consensus 376 ~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g 406 (436)
+|+..|++++++.|. +......+..++...+
T Consensus 59 ~A~~~~~~al~l~~~~~~~~~~~~l~~~l~~~~ 91 (100)
T 3ma5_A 59 DAIDTYAQGIEVAREEGTQKDLSELQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcCCchhHHHHHHHHHHHcc
Confidence 999999998887653 3444455555554433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-08 Score=85.22 Aligned_cols=121 Identities=18% Similarity=0.178 Sum_probs=96.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHH
Q 013800 246 GDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE 325 (436)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 325 (436)
+++++|+.+|+++.+....... +|.+|....+ +++|+.+|+++.+. .++.+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~-~~~A~~~~~~Aa~~--g~~~a~~~Lg----------------- 64 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQIN-KQKLFQYLSKACEL--NSGNGCRFLG----------------- 64 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSC-HHHHHHHHHHHHHT--TCHHHHHHHH-----------------
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCC-HHHHHHHHHHHHcC--CCHHHHHHHH-----------------
Confidence 4678999999999988754444 8877766654 88899999999887 7889999999
Q ss_pred HHHHHhHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 326 EHIQVLPIQS----KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE----LHHDHDKALCYFERAVQASPADSHVLAA 397 (436)
Q Consensus 326 ~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~d~~~A~~~~~~al~~~p~~~~~~~~ 397 (436)
.+|.. .+++++|+.+|+++.+. .++.++++||.+|.. .++ +++|+.+|+++.+.. ++.+...
T Consensus 65 -----~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d-~~~A~~~~~~Aa~~g--~~~A~~~ 134 (138)
T 1klx_A 65 -----DFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKN-EKQAVKTFEKACRLG--SEDACGI 134 (138)
T ss_dssp -----HHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTT--CHHHHHH
T ss_pred -----HHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcC-HHHHHHHHHHHHHCC--CHHHHHH
Confidence 77777 78999999999999876 678999999999988 667 999999999998874 4566665
Q ss_pred HHH
Q 013800 398 YAC 400 (436)
Q Consensus 398 la~ 400 (436)
++.
T Consensus 135 l~~ 137 (138)
T 1klx_A 135 LNN 137 (138)
T ss_dssp C--
T ss_pred Hhh
Confidence 543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-09 Score=84.81 Aligned_cols=87 Identities=15% Similarity=0.130 Sum_probs=78.2
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGE-IMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDE 409 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 409 (436)
..+...|++++|+..|+++++.+|+++. +++.+|.++..+|+ +++|+..|+++++++|++..++.. +.+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~--------~~~~ 78 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD-WQKALNNYQSAIELNPDSPALQAR--------KMVM 78 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTSTHHHHH--------HHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHHH--------HHHH
Confidence 7788899999999999999999999999 99999999999999 999999999999999999888744 4567
Q ss_pred HHHHHHHHHHhhCCCCh
Q 013800 410 DDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 410 ~A~~~~~~al~l~p~~~ 426 (436)
+++..|+++...+|...
T Consensus 79 ~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 79 DILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHhccCcccc
Confidence 88888888888776654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.95 E-value=4.4e-08 Score=94.08 Aligned_cols=147 Identities=18% Similarity=0.072 Sum_probs=94.5
Q ss_pred HHHHHhCCCCHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC----C--HHHHH-HH
Q 013800 222 KRMIDEYPCHPLLL--RNYAQLLQKKGD---LYRAEDYYNHATMADPGDGESWMQYAKLVWELHR----D--QHRAL-TY 289 (436)
Q Consensus 222 ~~al~~~P~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----d--~~~A~-~~ 289 (436)
+++....|.+..+| +..|..+...++ ..+|+.+|++|++++|+++.++..++.++..... . ...++ ..
T Consensus 184 ~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a 263 (372)
T 3ly7_A 184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE 263 (372)
T ss_dssp HHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHH
Confidence 34455567665443 455666655444 4788888888888888888888877777653221 0 00111 11
Q ss_pred HHH--HHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 290 FER--AALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLV 367 (436)
Q Consensus 290 ~~~--al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 367 (436)
++. ++..+|.++.++..++ ..+...|++++|+..+++|+.++|. ..+|..+|.++
T Consensus 264 ~~a~~a~~~~~~~a~~~~ala----------------------l~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~ 320 (372)
T 3ly7_A 264 IDNIVTLPELNNLSIIYQIKA----------------------VSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVY 320 (372)
T ss_dssp HHHHHTCGGGTTCHHHHHHHH----------------------HHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_pred HHHHHhcccCCcCHHHHHHHH----------------------HHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHH
Confidence 111 2244577777777776 5555567777777777777777764 66667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 368 WELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 368 ~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
...|+ +++|++.|.+|+.++|...
T Consensus 321 ~~~G~-~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 321 EMKGM-NREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHTTC-HHHHHHHHHHHHHHSCSHH
T ss_pred HHCCC-HHHHHHHHHHHHhcCCCcC
Confidence 77777 7777777777777777654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.2e-09 Score=106.49 Aligned_cols=129 Identities=10% Similarity=0.063 Sum_probs=105.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH
Q 013800 236 RNYAQLLQKKGDLYRAEDYYNHATMA-----DPGD---GESWMQYAKLVWELHRDQHRALTYFERAALA-----APQDSN 302 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~-----~p~~~~ 302 (436)
...+..+..+|+|++|+..+++++++ .|++ ...+.++|.+|..+|+ |++|+.++++++++ .|+++.
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~-~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA-YEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 34555677899999999999999986 4444 4678899999999875 99999999999986 355554
Q ss_pred ---HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhc
Q 013800 303 ---ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA-----NPGD---GEIMSQYAKLVWELH 371 (436)
Q Consensus 303 ---~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g 371 (436)
.+.+|| .+|..+|++++|+.+|++|+++ .|++ .++..+++.++..++
T Consensus 392 ~a~~l~nLa----------------------~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 392 LGMAVMRAG----------------------LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 456777 8889999999999999999986 4555 456678999999999
Q ss_pred CCHHHHHHHHHHHHHhC
Q 013800 372 HDHDKALCYFERAVQAS 388 (436)
Q Consensus 372 ~d~~~A~~~~~~al~~~ 388 (436)
. +++|...|.++.+..
T Consensus 450 ~-~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 450 M-FRQNEFMYHKMREAA 465 (490)
T ss_dssp H-HHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHH
Confidence 9 999999999987654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.92 E-value=4.7e-08 Score=93.88 Aligned_cols=149 Identities=9% Similarity=-0.071 Sum_probs=111.1
Q ss_pred HHHHhCCCCHHHHH--HHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH
Q 013800 257 HATMADPGDGESWM--QYAKLVWELH--RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332 (436)
Q Consensus 257 ~al~~~p~~~~~~~--~la~~~~~~~--~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 332 (436)
++...-|.++.+|- ..|..++... .++.+|+.+|++|++++|+++.++..++.++...
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~------------------ 246 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR------------------ 246 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH------------------
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH------------------
Confidence 34445566655443 3444444332 2368999999999999999999999888666421
Q ss_pred HHHcC-----C---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 333 IQSKG-----D---LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 333 ~~~~g-----~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
...+ . ...|... ..++..+|.++.++..++.++...|+ +++|+..+++|+.++|. ..++..+|.++..
T Consensus 247 -~~~~~~~~~~~~~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd-~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~ 322 (372)
T 3ly7_A 247 -HSQHPLDEKQLAALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGK-TDESYQAINTGIDLEMS-WLNYVLLGKVYEM 322 (372)
T ss_dssp -HHHSCCCHHHHHHHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred -hccCCCchhhHHHHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence 1111 0 1122221 12335679999999999999998999 99999999999999975 7788899999999
Q ss_pred CCChHHHHHHHHHHHhhCCCChh
Q 013800 405 TEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 405 ~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
.|++++|++.|.+|+.++|....
T Consensus 323 ~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 323 KGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TTCHHHHHHHHHHHHHHSCSHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCcCh
Confidence 99999999999999999998753
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-07 Score=94.50 Aligned_cols=192 Identities=10% Similarity=0.051 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013800 214 SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERA 293 (436)
Q Consensus 214 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~a 293 (436)
.+.....|++++...|..+.+|+.++..+...|+.++|...|++|+.. |.+...|..++... +. ++. ++++
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~----~~~---~~~l 265 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DE----EAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TC----THH---HHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-ch----hHH---HHHH
Confidence 345678999999999999999999999999999999999999999999 99887777665431 11 111 2222
Q ss_pred HHh-------------CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHc-CCHHHHHHHHH
Q 013800 294 ALA-------------APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSK-GDLEGAEEYFS 347 (436)
Q Consensus 294 l~~-------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~-g~~~~A~~~~~ 347 (436)
.+. .+....+|..++.++...++.+.|+.++.++ +. .+.... ++.+.|...|+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 211 0112366788888887788888888888766 31 222223 36999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013800 348 RAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 348 ~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (436)
.+++..|+.+..|..++......|+ .+.|...|+++ +.....|..+..+....|+.+.+.+++++++.
T Consensus 345 ~al~~~~~~~~~~~~yid~e~~~~~-~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 345 SGLLKHPDSTLLKEEFFLFLLRIGD-EENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999988888888888888 99999999987 45678888888888889999999898888875
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.87 E-value=8.2e-09 Score=104.32 Aligned_cols=123 Identities=11% Similarity=0.051 Sum_probs=101.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHH
Q 013800 275 LVWELHRDQHRALTYFERAALAA-----PQDSN---ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYF 346 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~-----p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~ 346 (436)
.+..+| +|++|+.+|++++++. |+++. ++.++| .+|..+|+|++|+.++
T Consensus 318 ~~~~qg-~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa----------------------~~y~~~g~~~eA~~~~ 374 (490)
T 3n71_A 318 KARSEG-LYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIAS----------------------EVLSYLQAYEEASHYA 374 (490)
T ss_dssp HHHTTT-CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHH----------------------HHHHHTTCHHHHHHHH
T ss_pred HHHhCC-CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----------------------HHHHHhcCHHHHHHHH
Confidence 334455 5999999999999873 55554 456777 8889999999999999
Q ss_pred HHHHHh-----CCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCChHH
Q 013800 347 SRAILA-----NPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQA-----SPADS---HVLAAYACFLWETEEDED 410 (436)
Q Consensus 347 ~~al~~-----~p~~---~~~~~~la~~~~~~g~d~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~ 410 (436)
++++++ .|++ ...+++||.+|..+|+ +++|+.+|++|+++ .|+++ +...+++.++..++.+++
T Consensus 375 ~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 375 RRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGH-IEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 3444 5678999999999999 99999999999975 57776 456788999999999999
Q ss_pred HHHHHHHHHhh
Q 013800 411 DSKSSDQFQQV 421 (436)
Q Consensus 411 A~~~~~~al~l 421 (436)
|...|.++.+.
T Consensus 454 ae~~~~~~~~~ 464 (490)
T 3n71_A 454 NEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998763
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-06 Score=89.10 Aligned_cols=201 Identities=12% Similarity=0.057 Sum_probs=146.4
Q ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 013800 212 DDSAEAEEYYKRMIDEYPC-HPLLLRNYAQLLQKK--GD-----LYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQ 283 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~--g~-----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~ 283 (436)
..+..|...|+.+....+. ....|..+...-... +- .......|++++...|..+.+|..++..+...+ +.
T Consensus 151 ~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~-~~ 229 (493)
T 2uy1_A 151 PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIG-QK 229 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CH
Confidence 3455566666666654333 344665555543321 11 456788999999999999999999999887765 59
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-chH--------------------HHHHHHHHHHHhHHHHcCCHHHH
Q 013800 284 HRALTYFERAALAAPQDSNILAAYACFLWEMED-DGE--------------------DDKAQEEHIQVLPIQSKGDLEGA 342 (436)
Q Consensus 284 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~--------------------A~~~~~~~~~~~~~~~~g~~~~A 342 (436)
++|...|++++.. |.+...|+.++... +.+. ++. ...++..++ ....+.+..+.|
T Consensus 230 ~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~--~~~~r~~~~~~A 305 (493)
T 2uy1_A 230 EKAKKVVERGIEM-SDGMFLSLYYGLVM-DEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHL--NYVLKKRGLELF 305 (493)
T ss_dssp HHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCTHHHHHHHHHTC----------CHHHHHHHHHHHH--HHHHHHHCHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHhhc-chhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHH--HHHHHcCCHHHH
Confidence 9999999999999 99988887766541 0000 000 001111111 444456789999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013800 343 EEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 343 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 418 (436)
...|.+| ...+....+|...|.+.+..++|.+.|...|+.+++..|+.+..+..++..+...|+.+.|..+|+++
T Consensus 306 R~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 306 RKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999 44334667888888888877755999999999999999999999999999999999999999998886
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.7e-07 Score=85.16 Aligned_cols=108 Identities=15% Similarity=0.078 Sum_probs=92.3
Q ss_pred HhCCCCHHHHHHHHHHHHHH----cC------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHHHHH
Q 013800 260 MADPGDGESWMQYAKLVWEL----HR------DQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGEDDKAQEEH 327 (436)
Q Consensus 260 ~~~p~~~~~~~~la~~~~~~----~~------d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~ 327 (436)
+.+|++++.++..|.+.... .+ ...+|...++++++++|+ +..+|..+|
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG------------------- 206 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLT------------------- 206 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH-------------------
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHH-------------------
Confidence 45788888888887766441 12 247899999999999999 677999999
Q ss_pred HHHhHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCC
Q 013800 328 IQVLPIQSK-----GDLEGAEEYFSRAILANPGD-GEIMSQYAKLVWEL-HHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 328 ~~~~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~-g~d~~~A~~~~~~al~~~p~ 390 (436)
.+|... |+.++|.++|++|++++|+. ..+++.+|..++.. |+ +++|..++++++...|.
T Consensus 207 ---~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd-~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 207 ---KFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN-RAGFDEALDRALAIDPE 272 (301)
T ss_dssp ---HHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC-HHHHHHHHHHHHHCCGG
T ss_pred ---HHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC-HHHHHHHHHHHHcCCCC
Confidence 777774 99999999999999999975 99999999999885 77 99999999999998876
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=3.9e-07 Score=76.23 Aligned_cols=96 Identities=14% Similarity=0.118 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC---CHHHHHHHHHHHHHhC-C-CCH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG---DLEGAEEYFSRAILAN-P-GDG 357 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~-p-~~~ 357 (436)
...+.+.|.+.++.++.+.++.+++| +++.+.+ +.++++.+++..++.+ | ++.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya----------------------~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~r 71 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYA----------------------WCLVRSKYNDDIRKGIVLLEELLPKGSKEEQR 71 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHH----------------------HHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHH----------------------HHHHcCCCHHHHHHHHHHHHHHHhcCCccchH
Confidence 56677888888888889999999999 7777766 6779999999999988 7 568
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
+.++++|..++++|+ |++|+++++++++++|++..+....-.+
T Consensus 72 d~lY~LAv~~~kl~~-Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 72 DYVFYLAVGNYRLKE-YEKALKYVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 899999999999999 9999999999999999988776655444
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.7e-07 Score=71.06 Aligned_cols=72 Identities=15% Similarity=0.113 Sum_probs=67.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013800 353 NPGDGEIMSQYAKLVWELHHD--HDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 353 ~p~~~~~~~~la~~~~~~g~d--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 424 (436)
+|++++++..+|.+++..++. .++|...++++++++|+++.++..+|..+++.|++++|+.+++++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 689999999999999876552 589999999999999999999999999999999999999999999999988
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.9e-07 Score=70.95 Aligned_cols=71 Identities=11% Similarity=-0.048 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 228 YPCHPLLLRNYAQLLQKKGD---LYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ 299 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~ 299 (436)
+|+++.++..+|.+++..++ .++|..+++++++++|+++.+++.+|.+++..++ |++|+.+|+++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~-y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFR-FQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCC
Confidence 57777888888888776555 6788888888888888888888888888777764 88888888888888777
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=4.9e-07 Score=75.59 Aligned_cols=93 Identities=17% Similarity=0.091 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHCCChHHHH
Q 013800 338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH---HDHDKALCYFERAVQAS-P-ADSHVLAAYACFLWETEEDEDDS 412 (436)
Q Consensus 338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~d~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~ 412 (436)
....+.+.|.+.+..++.+.++.+++|+++.+.. + .++++.+|+..+..+ | ++.++++++|..++++|+|++|+
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~-~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDD-IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHH-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 4567788888899989999999999999999977 5 779999999999998 7 56799999999999999999999
Q ss_pred HHHHHHHhhCCCChhHHhh
Q 013800 413 KSSDQFQQVAPIRQGAVTT 431 (436)
Q Consensus 413 ~~~~~al~l~p~~~~a~~~ 431 (436)
+++++++++.|++..+..+
T Consensus 92 ~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHH
Confidence 9999999999999887663
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=3.4e-07 Score=91.02 Aligned_cols=95 Identities=8% Similarity=-0.009 Sum_probs=81.6
Q ss_pred HcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHH
Q 013800 335 SKGDLEGAEEYFSRAILA-----NPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQA-----SPADS---HVLAAY 398 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~d~~~A~~~~~~al~~-----~p~~~---~~~~~l 398 (436)
..|+|++|+..|++++++ .|++ ..++.++|.+|..+|+ |++|+.++++++++ .|+++ ..+.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~-~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD-WEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 568999999999999986 3455 4678999999999999 99999999999975 35555 668999
Q ss_pred HHHHHHCCChHHHHHHHHHHHhh-----CCCChhHHh
Q 013800 399 ACFLWETEEDEDDSKSSDQFQQV-----APIRQGAVT 430 (436)
Q Consensus 399 a~~~~~~g~~~~A~~~~~~al~l-----~p~~~~a~~ 430 (436)
|.+|..+|++++|+.+|++++++ .|+++....
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 99999999999999999999986 477776555
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.6e-06 Score=68.10 Aligned_cols=74 Identities=12% Similarity=0.031 Sum_probs=48.9
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEY-------PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 272 (436)
....+|..++..++|..|+..|+++++.. +....++..+|.++.++|++++|+.++++++++.|++..+..++
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 45566777777777777777777776642 23346666777777777777777777777777777766665555
Q ss_pred H
Q 013800 273 A 273 (436)
Q Consensus 273 a 273 (436)
+
T Consensus 87 ~ 87 (104)
T 2v5f_A 87 K 87 (104)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2.4e-06 Score=67.07 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=63.5
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILAN-------PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
..++..|+|..|+.+|+.|++.. +..+.++..+|.+++++|+ +++|+.++++++++.|++..+..+++.+
T Consensus 13 ~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~-~~~A~~~~~~al~l~P~~~~~~~n~~~~ 89 (104)
T 2v5f_A 13 KVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD-LDKALLLTKKLLELDPEHQRANGNLKYF 89 (104)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHhhHHHH
Confidence 88899999999999999999873 3457899999999999999 9999999999999999999998888743
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=2.3e-06 Score=85.02 Aligned_cols=98 Identities=10% Similarity=0.080 Sum_probs=80.0
Q ss_pred hhhhCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHH
Q 013800 207 IMPNFDDSAEAEEYYKRMIDE-----YPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMA-----DPGD---GESWM 270 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~-----~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~ 270 (436)
.....|+|++|+.+|++++++ .|+++ ..+.++|.+|..+|+|++|+.++++++++ .|++ ...++
T Consensus 307 ~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 386 (433)
T 3qww_A 307 RAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL 386 (433)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 334568999999999999985 45555 67889999999999999999999999975 3444 55788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHH
Q 013800 271 QYAKLVWELHRDQHRALTYFERAALA-----APQDSNILA 305 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~-----~p~~~~~~~ 305 (436)
++|.+|..+|+ +++|+.+|++|+++ .|+++.+..
T Consensus 387 nLa~~~~~qg~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 387 KLGRLYMGLEN-KAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHHHhccC-HHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 99999999985 99999999999886 477766543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=2.4e-06 Score=84.91 Aligned_cols=109 Identities=8% Similarity=-0.090 Sum_probs=84.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---
Q 013800 239 AQLLQKKGDLYRAEDYYNHATMA-----DPGD---GESWMQYAKLVWELHRDQHRALTYFERAALA-----APQDSN--- 302 (436)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~-----~p~~~~--- 302 (436)
..-+..+|+|++|+..+++++++ .|++ ...+.++|.+|..+|+ |++|+.++++++++ .|+++.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~-~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL-LEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 34456789999999999999975 3454 4578899999999875 99999999999976 355554
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHh
Q 013800 303 ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA-----NPGDGE---IMSQYAKLVWEL 370 (436)
Q Consensus 303 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~~ 370 (436)
.++++| .+|..+|++++|+.+|++|+++ .|+++. ++.+|+.+...+
T Consensus 373 ~l~nLa----------------------~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 373 QVMKVG----------------------KLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----------------------HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 456777 8888999999999999999886 456554 445566655443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.3e-06 Score=86.71 Aligned_cols=99 Identities=8% Similarity=-0.041 Sum_probs=83.6
Q ss_pred hHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH---HH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILA-----NPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQA-----SPADS---HV 394 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~d~~~A~~~~~~al~~-----~p~~~---~~ 394 (436)
.-+..+|+|++|+..+++++++ .|++ ..++.++|.+|..+|+ |++|+.++++++++ .|+++ ..
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~-~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL-LEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3455789999999999999976 3444 5678999999999999 99999999999975 35555 56
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhh-----CCCChhHHh
Q 013800 395 LAAYACFLWETEEDEDDSKSSDQFQQV-----APIRQGAVT 430 (436)
Q Consensus 395 ~~~la~~~~~~g~~~~A~~~~~~al~l-----~p~~~~a~~ 430 (436)
+.++|.+|..+|++++|+.+|++++++ -|+++....
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 899999999999999999999999986 477776555
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00021 Score=72.35 Aligned_cols=163 Identities=15% Similarity=0.078 Sum_probs=120.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC-CCHHHH
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADP-GDGESWMQYAKLVWELH--------RDQHRALTYFERAALAAP-QDSNIL 304 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~--------~d~~~A~~~~~~al~~~p-~~~~~~ 304 (436)
+...-..+.+.|+.++|++.|++..+..- -+...|..+-.++...+ ++.++|..+|++.....- -+...+
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34444566677777777777777766532 24555555444433221 126788999988877642 266777
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013800 305 AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN-PGDGEIMSQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 305 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~d~~~A~~~~~~ 383 (436)
..+. ..+.+.|++++|..+|++..+.. .-+..+|..+-..+.+.|+ .++|.++|++
T Consensus 109 n~lI----------------------~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~-~~~A~~l~~~ 165 (501)
T 4g26_A 109 TNGA----------------------RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD-ADKAYEVDAH 165 (501)
T ss_dssp HHHH----------------------HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHH----------------------HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCC-HHHHHHHHHH
Confidence 7777 77888899999999999887753 2258889999999999999 9999999999
Q ss_pred HHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013800 384 AVQAS--PADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 384 al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 421 (436)
..+.. |+ ...+..+..++.+.|+.++|.+++++..+.
T Consensus 166 M~~~G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 166 MVESEVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 88753 44 678888999999999999999999987765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00045 Score=69.88 Aligned_cols=157 Identities=12% Similarity=0.069 Sum_probs=126.2
Q ss_pred hhhhhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhCC-CCHHHHHHHH
Q 013800 206 LIMPNFDDSAEAEEYYKRMIDEY--PCHPLLLRNYAQLLQKKG---------DLYRAEDYYNHATMADP-GDGESWMQYA 273 (436)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~p-~~~~~~~~la 273 (436)
..+.+.|+.++|+++|+++.+.. | +...|..+-.++...+ ..++|.+.|++.....- -+...|..+.
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 35677899999999999998863 4 5666666666665443 37899999999887643 3778888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh
Q 013800 274 KLVWELHRDQHRALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA 352 (436)
Q Consensus 274 ~~~~~~~~d~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 352 (436)
..+...++ +++|..+|++..+.. .-+...+..+. ..|.+.|++++|.+.|++..+.
T Consensus 113 ~~~~~~g~-~~~A~~l~~~M~~~g~~Pd~~tyn~lI----------------------~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 113 RLAVAKDD-PEMAFDMVKQMKAFGIQPRLRSYGPAL----------------------FGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHTC-HHHHHHHHHHHHHTTCCCCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhcCC-HHHHHHHHHHHHHcCCCCccceehHHH----------------------HHHHHCCCHHHHHHHHHHHHhc
Confidence 89888875 999999999998764 23667777777 7788899999999999998875
Q ss_pred CC-CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013800 353 NP-GDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 353 ~p-~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~ 387 (436)
.- -+..+|..+..++.+.|+ .++|.++|++.-+.
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~-~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKN-ADKVYKTLQRLRDL 204 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHh
Confidence 32 247889999999999999 99999999998764
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00011 Score=60.49 Aligned_cols=106 Identities=17% Similarity=0.184 Sum_probs=61.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 227 EYPCHPLLLRNYAQLLQKKGDL------YRAEDYYNHATMADPGD--------GESWMQYAKLVWELHRDQHRALTYFER 292 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~~~d~~~A~~~~~~ 292 (436)
..|.+++.|..+.......|+. ++-++.|++|+..-|-. ...|..+|.. ... +|.++|...|+.
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei-~D~d~aR~vy~~ 85 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAI-QEPDDARDYFQM 85 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHH-HCGGGCHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHh-cCHHHHHHHHHH
Confidence 4567777777777777777776 66677777777665532 3344445532 333 246666666666
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 293 AALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 293 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
++.+....+.+|..+| ....++|+...|...+.+|+.+.|..
T Consensus 86 a~~~hKkFAKiwi~~A----------------------qFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 86 ARANCKKFAFVHISFA----------------------QFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHCTTBHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHhHHHHHHHHHHH----------------------HHHHHcccHHHHHHHHHHHhccCCCc
Confidence 6655555555555555 44444555666666666666655553
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=98.05 E-value=7.4e-05 Score=61.53 Aligned_cols=112 Identities=15% Similarity=0.143 Sum_probs=90.0
Q ss_pred HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCH------HHHHHHHHHHHHhCCC--------CHHHH
Q 013800 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDL------EGAEEYFSRAILANPG--------DGEIM 360 (436)
Q Consensus 295 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~------~~A~~~~~~al~~~p~--------~~~~~ 360 (436)
-+.|++++.|..+. ....+.|+. ++-++.|++|+..-|- ....|
T Consensus 7 ~~~p~~yd~W~~yl----------------------~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LW 64 (161)
T 4h7y_A 7 MMMANNPEDWLSLL----------------------LKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQ 64 (161)
T ss_dssp ---CCSHHHHHHHH----------------------HHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHH
T ss_pred eeCCCCHHHHHHHH----------------------HHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHH
Confidence 45799999999999 555555776 7788899999887664 24567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 361 SQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 361 ~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
..+|.. ...++ .++|.+.|+.++.+....+.+|...|++..++|+...|.+.+.+++.+.|...+...
T Consensus 65 IrYA~~-~ei~D-~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 65 VRFAEL-KAIQE-PDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp HHHHHH-HHHHC-GGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred HHHHHH-HHhcC-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 777755 45566 999999999999988888999999999999999999999999999999987666443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.95 E-value=9.2e-05 Score=59.57 Aligned_cols=96 Identities=13% Similarity=0.085 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH---HHHHHHHHHHhC-C-CCH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG---AEEYFSRAILAN-P-GDG 357 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~---A~~~~~~al~~~-p-~~~ 357 (436)
...+...|.+.+..++....+.+++| +++.+..+... ++.+++..++.+ | ..-
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yA----------------------w~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~R 74 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYA----------------------WCLVRTRYNDDIRKGIVLLEELLPKGSKEEQR 74 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHH----------------------HHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHH----------------------HHHHcCCCHHHHHHHHHHHHHHHhcCCcchHH
Confidence 56677777878887888888888888 66666555544 888888887766 4 456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
+.++.||..++++|+ |.+|+.+++..|+..|++..+......+
T Consensus 75 d~lY~LAvg~yklg~-Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 75 DYVFYLAVGNYRLKE-YEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh-HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 788888989999988 9999999999999999888776554443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.86 E-value=8.5e-05 Score=59.78 Aligned_cols=94 Identities=17% Similarity=0.099 Sum_probs=81.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHCCChHH
Q 013800 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDK---ALCYFERAVQAS-P-ADSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 336 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~ 410 (436)
......+...|.+.+..++...++.+++|+++..... ... ++.+++..+..+ | ..-+.++.+|..++++|+|++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~-~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY-NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSS-HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3455677888888888888899999999999998776 555 999999988876 5 455889999999999999999
Q ss_pred HHHHHHHHHhhCCCChhHHh
Q 013800 411 DSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 411 A~~~~~~al~l~p~~~~a~~ 430 (436)
|+.+++.+++..|.+..+..
T Consensus 93 A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999988776
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00013 Score=61.25 Aligned_cols=104 Identities=13% Similarity=0.075 Sum_probs=79.4
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------C------
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGD---------GEIMSQYAKLVWELHHDHDKALCYFERAVQAS------P------ 389 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~------p------ 389 (436)
..+...|.|+.|+.....++.+..++ .+++..+|.+++..++ |.+|...|++||+.. +
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~e-yrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKE-YRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 56678899999999999877664332 3488999999999999 999999999998642 1
Q ss_pred -------------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHhhhhhc
Q 013800 390 -------------ADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVTTANVY 435 (436)
Q Consensus 390 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~an~y 435 (436)
.+.++.+.++.|+.+++++++|+..++.+-...-.......+|++|
T Consensus 107 ~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 107 GNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred cccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 1126889999999999999999998876544433444444566665
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0018 Score=54.36 Aligned_cols=92 Identities=14% Similarity=-0.027 Sum_probs=65.4
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhC---CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC--
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEY---PCH------PLLLRNYAQLLQKKGDLYRAEDYYNHATMAD---PGD-- 265 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~-- 265 (436)
+++.-...+...|.|+.|+-....++... |+- ..++..+|.+++..++|..|...|++++... +..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34444556788899999999999876643 331 2578999999999999999999999997652 111
Q ss_pred --------------------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 266 --------------------GESWMQYAKLVWELHRDQHRALTYFER 292 (436)
Q Consensus 266 --------------------~~~~~~la~~~~~~~~d~~~A~~~~~~ 292 (436)
.++.+.++.|+.++++ +.+|+..++.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~-~~~Ai~~Le~ 147 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQ-DKDAIAILDG 147 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTC-HHHHHHHHHT
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCC-HHHHHHHHhc
Confidence 2456666666666654 6666666543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.018 Score=46.94 Aligned_cols=81 Identities=11% Similarity=0.024 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC---CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCC
Q 013800 298 PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG---DLEGAEEYFSRAILANPG-DGEIMSQYAKLVWELHHD 373 (436)
Q Consensus 298 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~d 373 (436)
.-...+.++++ +++.+.. +..+++.+++..++..|. .-+.++.||..++++|+
T Consensus 36 ~vs~~t~F~YA----------------------w~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~- 92 (144)
T 1y8m_A 36 TATIQSRFNYA----------------------WGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE- 92 (144)
T ss_dssp TSCHHHHHHHH----------------------HHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTC-
T ss_pred CCcHHHHHHHH----------------------HHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhh-
Confidence 45678888888 4444444 445788888888888874 56788888888999988
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 374 HDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 374 ~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
|.+|+++++..|+..|++..+......+
T Consensus 93 Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 93 YSMAKRYVDTLFEHERNNKQVGALKSMV 120 (144)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999999999999999887766554433
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0032 Score=50.73 Aligned_cols=79 Identities=11% Similarity=0.025 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC---CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCHH
Q 013800 300 DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG---DLEGAEEYFSRAILANPG-DGEIMSQYAKLVWELHHDHD 375 (436)
Q Consensus 300 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~d~~ 375 (436)
.+.+.+++| +++.+.. +..+++.+++..++.+|. .-+.++.||..++++|+ |.
T Consensus 39 s~qt~F~yA----------------------w~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgd-Y~ 95 (134)
T 3o48_A 39 TIQSRFNYA----------------------WGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE-YS 95 (134)
T ss_dssp CHHHHHHHH----------------------HHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC-HH
T ss_pred ChhhHHHHH----------------------HHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhh-HH
Confidence 567788888 4444443 445788888888888884 47888899999999999 99
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 376 KALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 376 ~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
+|+++.+..|++.|++..+......+
T Consensus 96 ~Ar~y~d~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 96 MAKRYVDTLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 99999999999999988776555444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.011 Score=48.29 Aligned_cols=77 Identities=8% Similarity=-0.043 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 354 PGDGEIMSQYAKLVWELHH--DHDKALCYFERAVQASPAD-SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 354 p~~~~~~~~la~~~~~~g~--d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
.-..++.+++|+++..... |..+++.+++..+...|.. -+.++.+|..++++|+|++|.++.+.+|++.|.+..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 4568999999999988765 2468999999999998854 578899999999999999999999999999999988766
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0057 Score=49.32 Aligned_cols=75 Identities=8% Similarity=-0.047 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013800 356 DGEIMSQYAKLVWELHH--DHDKALCYFERAVQASPAD-SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 356 ~~~~~~~la~~~~~~g~--d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 430 (436)
.+++.+++|+++.+... |..+++.+++..+...|.. -+.++.+|..++++|+|++|.++.+.++++.|.+..+..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 58999999999988765 2458999999999999854 688999999999999999999999999999999998776
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.014 Score=61.27 Aligned_cols=124 Identities=15% Similarity=0.069 Sum_probs=80.8
Q ss_pred cCC-HHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHH---HHHHHH
Q 013800 245 KGD-LYRAEDYYNHATMADPGDGESWMQYA-KLVWELHRDQHRALTYFERAALA--------APQDSNILA---AYACFL 311 (436)
Q Consensus 245 ~g~-~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~~~d~~~A~~~~~~al~~--------~p~~~~~~~---~la~~~ 311 (436)
.++ ++.|++++++..+.+|.....+.... .++...+.+--+|+..+.++++. .+.+..... ..+.++
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL 340 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLL 340 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHH
Confidence 445 57788889888888887643332211 11111122245677777776642 233322211 111111
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013800 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~a 384 (436)
..+- ..+...|+++-|+++.++|+...|.+...|+.|+.+|..+|+ |+.|+-.+.-+
T Consensus 341 ~~Qa---------------~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d-~e~ALLtLNSc 397 (754)
T 4gns_B 341 NIQT---------------NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEE-YEKALFAINSM 397 (754)
T ss_dssp HHHH---------------HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC-HHHHHHHHHHS
T ss_pred HHHH---------------HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhcc-HHHHHHHHhcC
Confidence 1111 556678999999999999999999999999999999999999 99999776654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.15 Score=53.83 Aligned_cols=95 Identities=12% Similarity=-0.066 Sum_probs=51.7
Q ss_pred hhCCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 013800 209 PNFDDSAEAEE-YYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRAL 287 (436)
Q Consensus 209 ~~~g~~~~A~~-~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~ 287 (436)
...+++++|.+ ++.. -| +...+...+..+...|.+++|++..+ ++...+.+ ....+ ++++|.
T Consensus 610 ~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f~~---~l~~~-~~~~A~ 672 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQKFEL---ALKVG-QLTLAR 672 (814)
T ss_dssp HHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHHHH---HHHHT-CHHHHH
T ss_pred HHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchheeh---hhhcC-CHHHHH
Confidence 34577777765 4411 01 01222555666677777777766542 22222222 23444 377777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHH
Q 013800 288 TYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE 325 (436)
Q Consensus 288 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 325 (436)
++.+ ..++...|..+|......++++.|.+.|.
T Consensus 673 ~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~ 705 (814)
T 3mkq_A 673 DLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFT 705 (814)
T ss_dssp HHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6643 23566777777766666666666665554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.13 Score=49.91 Aligned_cols=166 Identities=8% Similarity=-0.079 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG-----ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNIL--- 304 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~--- 304 (436)
.+.+.+|.+|...|++++-.+++......-+.-+ .....+-..+....+..+.-+..+..+++...+....|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888877776544322221 11122222222222223333344444443222211111
Q ss_pred ---HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCHH
Q 013800 305 ---AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG------DGEIMSQYAKLVWELHHDHD 375 (436)
Q Consensus 305 ---~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~d~~ 375 (436)
..++ .+|+..|+|.+|.+.+.+.++--.. -.+++..-..++..+++ +.
T Consensus 100 ~l~~kL~----------------------~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n-~~ 156 (394)
T 3txn_A 100 SLEARLI----------------------ALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSN-LP 156 (394)
T ss_dssp HHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHHH----------------------HHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc-HH
Confidence 1334 7888899999998888888764221 14567777788889988 99
Q ss_pred HHHHHHHHHHHhC---CCCH----HHHHHHHHHHH-HCCChHHHHHHHHHHHhh
Q 013800 376 KALCYFERAVQAS---PADS----HVLAAYACFLW-ETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 376 ~A~~~~~~al~~~---p~~~----~~~~~la~~~~-~~g~~~~A~~~~~~al~l 421 (436)
++...+.++.... +.++ .+...-|..+. ..++|.+|..+|-++..-
T Consensus 157 k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 157 KARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 9999998887543 2233 34455577788 899999998888887643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.11 Score=55.01 Aligned_cols=165 Identities=13% Similarity=0.077 Sum_probs=92.9
Q ss_pred HhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 013800 204 VDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQ 283 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~ 283 (436)
+...+...|.+++|+...+ ++... ..+....|++++|.+..+ .-++...|..+|..+...++ +
T Consensus 635 ~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~-~ 697 (814)
T 3mkq_A 635 IARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFN-F 697 (814)
T ss_dssp HHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTC-H
T ss_pred HHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCC-H
Confidence 3345556666666665442 23222 334577899999988754 34678999999999888874 9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 284 HRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQY 363 (436)
Q Consensus 284 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 363 (436)
+.|+.+|.++-.. . .+..++...++.+...++. ......|++..|..+|.+. .+ +...
T Consensus 698 ~~A~~~y~~~~d~-----~---~l~~l~~~~~~~~~~~~~~------~~a~~~~~~~~A~~~~~~~-----g~---~~~a 755 (814)
T 3mkq_A 698 KLAIEAFTNAHDL-----E---SLFLLHSSFNNKEGLVTLA------KDAETTGKFNLAFNAYWIA-----GD---IQGA 755 (814)
T ss_dssp HHHHHHHHHHTCH-----H---HHHHHHHHTTCHHHHHHHH------HHHHHTTCHHHHHHHHHHH-----TC---HHHH
T ss_pred HHHHHHHHHccCh-----h---hhHHHHHHcCCHHHHHHHH------HHHHHcCchHHHHHHHHHc-----CC---HHHH
Confidence 9999999986211 1 1222222233333222222 3334445555555444331 11 1112
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHH
Q 013800 364 AKLVWELHHDHDKALCYFERAVQASPAD---SHVLAAYACFLWETEEDEDD 411 (436)
Q Consensus 364 a~~~~~~g~d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A 411 (436)
..+|...++ +++|+.+.++ ..|.. ..+...++.-+...|+.+.|
T Consensus 756 ~~~~~~~~~-~~~A~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 756 KDLLIKSQR-FSEAAFLGST---YGLGDNEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp HHHHHHTTC-HHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHcCC-hHHHHHHHHH---hCCChHHHHHHHHHHHHHHHhccchhHH
Confidence 234555667 8888776553 45443 25666667777777765433
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.075 Score=48.25 Aligned_cols=122 Identities=16% Similarity=0.024 Sum_probs=83.5
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
.+.+.|+.++|++.+...++.+|.++.....+.+++.-.|+++.|...++.+.+++|........+-. .-.|
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~--------lI~a 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRH--------LVKA 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHH--------HHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHH--------HHHH
Confidence 35667999999999999999999999999999999999999999999999999999986543222111 1111
Q ss_pred HHHHHHHHHhC-----CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 287 LTYFERAALAA-----PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 287 ~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
+..=.+++.-. +..+..|..+..-. ......|+.++|...-.+|++..|.
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~A-------------------l~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSF-------------------NLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHH-------------------HHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHH-------------------HHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 11112222211 22333333222100 4455679999999999999888765
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.055 Score=56.88 Aligned_cols=115 Identities=9% Similarity=0.003 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh--------CC
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA--------NP 354 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p 354 (436)
++.|+.++++....+|.....+. .+.+..... ...+--+|+..+.++++. .+
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~~-~~~i~~~~~-------------------~~~~Ev~av~ll~~~l~~~~~~~~~l~~ 324 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYYK-TAMITILDH-------------------IETKELDMITILNETLDPLLSLLNDLPP 324 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHTT-------------------CGGGHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHhhCCchhHHHH-HHHHHHHHH-------------------hhhhhHHHHHHHHHHHHHhhhhhhhhcc
Confidence 68899999999999997654332 221111000 011222344444444321 12
Q ss_pred C----------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013800 355 G----------DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 355 ~----------~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 418 (436)
. ....+..-+..+...|+ ++-|+++.++|+...|.....|+.|+.+|..+|+++.|+-.++.+
T Consensus 325 ~~~~~~~~~~~~~~LL~~Qa~FLl~K~~-~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 325 RDADSARLMNCMSDLLNIQTNFLLNRGD-YELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccccccCcchHHHHHHHHHHhccCc-HHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 2 23456667778888888 999999999999999999999999999999999999998766554
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.64 Score=39.00 Aligned_cols=45 Identities=7% Similarity=0.126 Sum_probs=33.5
Q ss_pred HHHHHHhCCCCH-HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 381 FERAVQASPADS-HVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 381 ~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
.++....-|.-+ ......+..++.+|-.++...+|......+|.|
T Consensus 196 ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 196 VKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPMF 241 (242)
T ss_dssp HHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCc
Confidence 334444556654 344667788999999999999999999999887
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.3 Score=47.23 Aligned_cols=86 Identities=12% Similarity=0.069 Sum_probs=71.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC--------C--------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013800 334 QSKGDLEGAEEYFSRAILANPG--------D--------------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 334 ~~~g~~~~A~~~~~~al~~~p~--------~--------------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~ 391 (436)
...|+.+.|...+.+|+.+... . ..+...++..+...|+ +.+|+..+.+++..+|-+
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~-~~~a~~~l~~~~~~~P~~ 204 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGR-ASAVIAELEALTFEHPYR 204 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTC
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC
Confidence 3468888999999999887321 1 1234456677788999 999999999999999999
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013800 392 SHVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 392 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (436)
..++..+..++...|+..+|++.|+++..
T Consensus 205 E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 205 EPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999988654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.12 Score=46.91 Aligned_cols=95 Identities=18% Similarity=0.134 Sum_probs=76.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH---HHH----------
Q 013800 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL---AAY---------- 398 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~---~~l---------- 398 (436)
.+.+.|.+++|+......++.+|.|......|-.+++-.|+ +++|.+.++.+.+++|+..... ..+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~-w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~v 84 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGD-FERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 84 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHH
Confidence 35578999999999999999999999999999999999999 9999999999999988754221 111
Q ss_pred ----------------------HHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 399 ----------------------ACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 399 ----------------------a~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
+......|+.++|...-.++++..|...+
T Consensus 85 faG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 85 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 22234457888888888888888766544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.58 Score=39.69 Aligned_cols=101 Identities=11% Similarity=0.072 Sum_probs=63.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013800 242 LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
....|+++.|.+..+.. ++...|..+|......++ ++-|+.+|+++-. ... +.
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn-~~lAe~cy~~~~D-----~~~---L~------------- 67 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGN-ASLAEMIYQTQHS-----FDK---LS------------- 67 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTC-HHHHHHHHHHTTC-----HHH---HH-------------
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCC-hHHHHHHHHHhCC-----HHH---HH-------------
Confidence 35778888888876654 667788888888777764 8888888776521 111 11
Q ss_pred HHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013800 322 KAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 322 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~a 384 (436)
.+|.-.|+.++-...-+.+.... + ++....+++.+|+ +++++++|.+.
T Consensus 68 ---------~Ly~~tg~~e~L~kla~iA~~~g-~----~n~af~~~l~lGd-v~~~i~lL~~~ 115 (177)
T 3mkq_B 68 ---------FLYLVTGDVNKLSKMQNIAQTRE-D----FGSMLLNTFYNNS-TKERSSIFAEG 115 (177)
T ss_dssp ---------HHHHHHTCHHHHHHHHHHHHHTT-C----HHHHHHHHHHHTC-HHHHHHHHHHT
T ss_pred ---------HHHHHhCCHHHHHHHHHHHHHCc-c----HHHHHHHHHHcCC-HHHHHHHHHHC
Confidence 45556677766555544444322 2 2223345667788 88888888653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.3 Score=47.31 Aligned_cols=59 Identities=8% Similarity=0.009 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHH
Q 013800 269 WMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 269 ~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 348 (436)
...++..+...+ ++.+|+..+++++..+|-+..++..+. .++...|+..+|+..|++
T Consensus 174 ~~~~~~~~l~~g-~~~~a~~~l~~~~~~~P~~E~~~~~lm----------------------~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 174 HTAKAEAEIACG-RASAVIAELEALTFEHPYREPLWTQLI----------------------TAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHH----------------------HHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHcCCHHHHHHHHHH
Confidence 344555666666 499999999999999999999999999 666667777777777666
Q ss_pred HH
Q 013800 349 AI 350 (436)
Q Consensus 349 al 350 (436)
+-
T Consensus 231 ~r 232 (388)
T 2ff4_A 231 VK 232 (388)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.26 Score=41.83 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=41.3
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA 258 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a 258 (436)
+..+.|+++.|.++.+.. ++...|..+|......|+++-|+.+|.++
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 345679999999987765 67899999999999999999999999876
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=3.2 Score=42.57 Aligned_cols=87 Identities=9% Similarity=0.054 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013800 339 LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 418 (436)
..++...+.++.....+ ......++......|+ +..|...|.+.-..........+.+|.++..+|+.++|..+|+++
T Consensus 268 ~~~~~~~~~~~~~~~~~-~~~~e~~~r~Alr~~d-~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~ 345 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRSQS-TSLIERRVRMALGTGD-RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQL 345 (618)
T ss_dssp CHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHTC-HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHhccccCCC-hHHHHHHHHHHHHCCC-HHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55677777776654443 3344444445556788 999999997754433345778899999999999999999999998
Q ss_pred HhhCCCChhH
Q 013800 419 QQVAPIRQGA 428 (436)
Q Consensus 419 l~l~p~~~~a 428 (436)
.. ...|.+.
T Consensus 346 a~-~~~fYg~ 354 (618)
T 1qsa_A 346 MQ-QRGFYPM 354 (618)
T ss_dssp HT-SCSHHHH
T ss_pred hc-CCChHHH
Confidence 86 3455553
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.35 E-value=0.18 Score=50.45 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=56.3
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
....+|.+..-...+..|..+|.+|+.+.|++...+..+|.+....|+.-+|+-+|.+++......+.+..++..++-.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 4556677766667777777777777777777777777777777777777777777777777666666666666655443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=94.26 E-value=0.41 Score=46.29 Aligned_cols=166 Identities=11% Similarity=0.009 Sum_probs=104.0
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHH----
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQK-KGDLYRAEDYYNHATMADPGDGES---- 268 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~---- 268 (436)
.+...+|.++...|++++...++......-+.-+ .....+-..+.. .+..+.-++.+..+++.....-..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888888887777776544333222 122222222222 345555566666666543322222
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH----HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013800 269 --WMQYAKLVWELHRDQHRALTYFERAALAAPQ--DSN----ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 269 --~~~la~~~~~~~~d~~~A~~~~~~al~~~p~--~~~----~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
-..+|.+|+..+ +|.+|.+++.+.++--.. +.. ++..-. .+|...+++.
T Consensus 100 ~l~~kL~~l~~~~~-~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~----------------------~~~~~~~n~~ 156 (394)
T 3txn_A 100 SLEARLIALYFDTA-LYTEALALGAQLLRELKKLDDKNLLVEVQLLES----------------------KTYHALSNLP 156 (394)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHH----------------------HHHHHTTCHH
T ss_pred HHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhccccchhHHHHHHHHH----------------------HHHHHhccHH
Confidence 237899988887 599999999998875322 211 112222 7788889999
Q ss_pred HHHHHHHHHHHhC---CCCH----HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhC
Q 013800 341 GAEEYFSRAILAN---PGDG----EIMSQYAKLVW-ELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 341 ~A~~~~~~al~~~---p~~~----~~~~~la~~~~-~~g~d~~~A~~~~~~al~~~ 388 (436)
++...|.++.... +.++ .....-|..+. ..++ |.+|...|-.++...
T Consensus 157 k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rd-yk~A~~~F~eaf~~f 211 (394)
T 3txn_A 157 KARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERD-FKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccC-HHHHHHHHHHHHhcc
Confidence 9999998886653 1223 34455666677 6777 999999998887543
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.83 Score=38.32 Aligned_cols=91 Identities=9% Similarity=-0.061 Sum_probs=65.9
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--h---------------CCCCHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQ--A---------------SPADSH 393 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~--~---------------~p~~~~ 393 (436)
..+.-.|.|..++-.+. .-+.....+.-+.|+...++ |..|+..++..++ . +|.+.+
T Consensus 41 I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKd-YkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkE 114 (242)
T 3kae_A 41 IVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKD-YKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEE 114 (242)
T ss_dssp HHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHH
T ss_pred hhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccCcccccccceeeeccchHH
Confidence 66666788877765542 33456677777888888877 8888888888873 1 344444
Q ss_pred -HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 394 -VLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 394 -~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
.+..+|.++.+.|+.++|+.++.......|.|..
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 4456788888899999999999888888776654
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.62 E-value=0.48 Score=47.34 Aligned_cols=73 Identities=18% Similarity=0.174 Sum_probs=62.3
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
.+......+..|..+|.+|+.+.|++...++.||.+....|+ .-+|+-+|.+++....-.+.+..++..++..
T Consensus 160 DL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~-~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 160 DIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD-HLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC-HHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccc-cHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 666667788999999999999999999999999999999998 8999999999987766667777777766543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.98 E-value=1.2 Score=48.25 Aligned_cols=98 Identities=8% Similarity=-0.138 Sum_probs=81.2
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMID-----EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP-GDGESWMQY 272 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 272 (436)
..+..+=..+++.|+.++|..+|..+.+ ..| +...|..+...|.+.|+.++|.+.|++..+..- -|...|..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4677777889999999999999977543 345 788999999999999999999999999988643 377778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Q 013800 273 AKLVWELHRDQHRALTYFERAALAA 297 (436)
Q Consensus 273 a~~~~~~~~d~~~A~~~~~~al~~~ 297 (436)
-.++.+.++..++|.++|++..+..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 8888888765678999999988764
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.34 E-value=6.6 Score=43.52 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=68.2
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHHcC
Q 013800 225 IDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-----------------------DPGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 225 l~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----------------------~p~~~~~~~~la~~~~~~~~ 281 (436)
+..-|.++..-+.+|.++...|++++|..+|+++-.- ....+..|.....++...+
T Consensus 835 ~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~- 913 (1139)
T 4fhn_B 835 IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES- 913 (1139)
T ss_dssp HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS-
T ss_pred hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC-
Confidence 3455777777899999999999999999999887321 0112344556665555554
Q ss_pred CHHHHHHHHHHHHHhCCC-CHH----HHHHHHHHHHHccCchHHHHHH
Q 013800 282 DQHRALTYFERAALAAPQ-DSN----ILAAYACFLWEMEDDGEDDKAQ 324 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~-~~~----~~~~la~~~~~~g~~~~A~~~~ 324 (436)
-++.+++.-+.|++..+. +.. .|.++-......+++++|-..+
T Consensus 914 ~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 914 AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 589999999999987654 332 4666676666666666665555
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.89 E-value=5.7 Score=43.09 Aligned_cols=97 Identities=11% Similarity=-0.109 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMA----DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA-PQDSNILAAY 307 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~-p~~~~~~~~l 307 (436)
..|..+-..|.+.|+.++|...|....+. -.-+...|..+-..|.+.|+ +++|.++|++..+.. .-|...+..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~-~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA-FKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 46788889999999999999999775432 34477889999889999986 999999999998865 2377788888
Q ss_pred HHHHHHccCc-hHHHHHHHHHHHH
Q 013800 308 ACFLWEMEDD-GEDDKAQEEHIQV 330 (436)
Q Consensus 308 a~~~~~~g~~-~~A~~~~~~~~~~ 330 (436)
..++++.|+. ++|.++++++...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc
Confidence 8889998885 6788899888877
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.46 E-value=1.4 Score=43.35 Aligned_cols=97 Identities=9% Similarity=0.080 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-CCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMA-D-PGD----GESWMQYAKLVWELHRDQHRALTYFERAAL---AAPQDSNI 303 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-~-p~~----~~~~~~la~~~~~~~~d~~~A~~~~~~al~---~~p~~~~~ 303 (436)
.....|+.++...|++.+|...+.....- . ..+ .+++.....++...+ |+.+|...++++.. ..+..+..
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~-d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKG-DYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhhcccCCcHHH
Confidence 45578999999999999999999987642 1 112 467777788888886 59999999999742 23444332
Q ss_pred ----HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh
Q 013800 304 ----LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA 352 (436)
Q Consensus 304 ----~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 352 (436)
+...| .++...++|.+|..+|..++..
T Consensus 217 k~~~~~~~~----------------------~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 217 KLEYYNLLV----------------------KISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHH----------------------HHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----------------------HHHHHhhhHHHHHHHHHHHHhc
Confidence 23344 6777788888888888888764
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.22 E-value=0.55 Score=46.07 Aligned_cols=104 Identities=13% Similarity=0.047 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHH
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG---DGESWMQYAKLVWELHRDQHRALTYFERAALAAP--QDSNILAA 306 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p--~~~~~~~~ 306 (436)
..++..+|..|...|++++|.+.|.++...... -.+.+.....++...+ ||..+...+.++-.+.. .++.....
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~-d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYN-DQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 356788999999999999999999888775322 3567777777777776 59999999988866532 23322211
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC
Q 013800 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP 354 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 354 (436)
+ ....| .++...++|..|...|..++....
T Consensus 210 l---k~~~g---------------l~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 210 Y---KTYYG---------------IHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp H---HHHHH---------------HGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred H---HHHHH---------------HHHHHhChHHHHHHHHHHHhccCC
Confidence 1 11111 556678899999999988876543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=90.79 E-value=8.5 Score=39.45 Aligned_cols=51 Identities=8% Similarity=0.044 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013800 362 QYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 362 ~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 415 (436)
..+..++..|. ...|...+...+... +..-...++.+....|.++.++...
T Consensus 386 ~r~~~L~~~g~-~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 386 ARVRELMYWNL-DNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCC-hhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 34455666666 666666665554432 2333445555556666666655444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.66 E-value=3.5 Score=45.76 Aligned_cols=162 Identities=11% Similarity=-0.024 Sum_probs=91.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC--HHHHHHHHHHHHHc
Q 013800 238 YAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA-PQD--SNILAAYACFLWEM 314 (436)
Q Consensus 238 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~-p~~--~~~~~~la~~~~~~ 314 (436)
+...+...+.++-|.+ .+...|.++...+.+|.++...++ +++|..+|+++..-- .++ ......+..+....
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge-~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKE-AVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 3444555566655443 345567788888889999888874 999999998874211 110 00000000000000
Q ss_pred cCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013800 315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG-DG----EIMSQYAKLVWELHHDHDKALCYFERAVQASP 389 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~----~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p 389 (436)
.....-..+|...+ .++.+.+.++.+++..+.|++..+. +. ..|.++=..+...|+ |++|...+...=. ..
T Consensus 893 ~~~~~l~~YY~hv~--~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~-ye~Ay~aL~~~pd-~~ 968 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLS--KKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK-FDAAHVALMVLST-TP 968 (1139)
T ss_dssp TSCCSSHHHHHHHH--HHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC-SGGGGHHHHHHHH-SS
T ss_pred cccccHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC-HHHHHHHHHhCCC-HH
Confidence 00000001111111 6777889999999999999987653 33 256777778889999 9999877754321 12
Q ss_pred CCHHHHHHHHHHHHHCCCh
Q 013800 390 ADSHVLAAYACFLWETEED 408 (436)
Q Consensus 390 ~~~~~~~~la~~~~~~g~~ 408 (436)
.....+..+...+++.|..
T Consensus 969 ~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHhCCCh
Confidence 2245555555555555443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.52 E-value=14 Score=36.16 Aligned_cols=184 Identities=8% Similarity=0.009 Sum_probs=92.8
Q ss_pred CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HHcCC
Q 013800 212 DDSAEAEEYYKRMIDE------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW---ELHRD 282 (436)
Q Consensus 212 g~~~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~~~d 282 (436)
|++++|++.+....+. .+....+...+..++...++++...+++.-..........+...+..... ..-..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6778888777544432 13345778888889999999998888776554443333332222221111 10000
Q ss_pred HHHHHHHHHHHHHhC----CC-------CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHH
Q 013800 283 QHRALTYFERAALAA----PQ-------DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 283 ~~~A~~~~~~al~~~----p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 351 (436)
.+ .......+..- .+ .......|+ .++...|++.+|...+.....
T Consensus 110 ~d--~~~~~~~i~~l~~vte~kiflE~erarl~~~La----------------------~i~e~~g~~~eA~~iL~~l~~ 165 (445)
T 4b4t_P 110 LD--LNTRISVIETIRVVTENKIFVEVERARVTKDLV----------------------EIKKEEGKIDEAADILCELQV 165 (445)
T ss_dssp TH--HHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHH----------------------HHHHHHTCHHHHHHHHHHHHH
T ss_pred hh--HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH----------------------HHHHHccCHHHHHHHHHHHHH
Confidence 11 11112222211 11 122334556 555556666666666655432
Q ss_pred h-CC-C----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCCH----HHHHHHHHHHHHCCChHHHHHHHHHH
Q 013800 352 A-NP-G----DGEIMSQYAKLVWELHHDHDKALCYFERAVQ---ASPADS----HVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 352 ~-~p-~----~~~~~~~la~~~~~~g~d~~~A~~~~~~al~---~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a 418 (436)
- .. . -.+.+....+++...++ +.+|...+.++.. ..+..+ ..+...|.++...++|.+|..+|..+
T Consensus 166 Et~~~~~~~~kve~~l~q~rl~l~~~d-~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 166 ETYGSMEMSEKIQFILEQMELSILKGD-YSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHCSSSCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 1 11 0 13455555566666666 6666666666432 122222 33445556666666666666666655
Q ss_pred Hh
Q 013800 419 QQ 420 (436)
Q Consensus 419 l~ 420 (436)
..
T Consensus 245 ~~ 246 (445)
T 4b4t_P 245 YQ 246 (445)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.51 E-value=0.83 Score=45.56 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=47.4
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGD-------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~ 391 (436)
+.|...+.+++|..+..++. .|.. ...++.+|.++...++ |.+|.+++..|+...|.+
T Consensus 239 RnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~-Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 239 RDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLD-YSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHTSSCSCS
T ss_pred HHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCcc
Confidence 77888899999999998884 4432 4567788999999999 999999999999877654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.39 E-value=0.76 Score=45.04 Aligned_cols=100 Identities=13% Similarity=0.024 Sum_probs=76.3
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHH----H
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEY--PC-HPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD--PGDGE----S 268 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~----~ 268 (436)
..++..+|..+.+.|++++|.+.|.++.... +. -.++++....++...+++..+..++.++-... ..++. .
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 3578899999999999999999999998753 22 34888999999999999999999999997652 22332 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013800 269 WMQYAKLVWELHRDQHRALTYFERAALAAP 298 (436)
Q Consensus 269 ~~~la~~~~~~~~d~~~A~~~~~~al~~~p 298 (436)
....|.+++.. ++|.+|..+|-.++....
T Consensus 211 k~~~gl~~l~~-r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 211 KTYYGIHCLAV-RNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHGGGGT-SCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHh-ChHHHHHHHHHHHhccCC
Confidence 23344444444 469999999998876643
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.28 E-value=0.35 Score=48.23 Aligned_cols=131 Identities=10% Similarity=0.002 Sum_probs=54.6
Q ss_pred hhhCCCHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHHh-----
Q 013800 208 MPNFDDSAEAEEYYKRMID-----------EYPCHPLLLRNYAQLLQKKGDLYRAE----------DYYNHATMA----- 261 (436)
Q Consensus 208 ~~~~g~~~~A~~~~~~al~-----------~~P~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~----- 261 (436)
+...+++++|..+-...+. +++-.+.+|+.++.++...|+..... ..+-.++..
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 4455778877776665541 23345677888888888888776532 233333332
Q ss_pred CCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013800 262 DPG-DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 262 ~p~-~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
++. ....+..+-..|...+ .|++|..+..++. .|........++..++..| +++.-+++|.
T Consensus 226 D~~~qa~l~nllLRnYL~~~-~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~G---------------RI~a~q~~Y~ 287 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNG-EVDSASDFISKLE--YPHTDVSSSLEARYFFYLS---------------KINAIQLDYS 287 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSS-CSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHH---------------HHHHHTTCHH
T ss_pred CcchhHHHHHHHHHHHHccC-cHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHH---------------HHHHHhccHH
Confidence 232 2556667777777765 5999999999985 4533111112222233333 8899999999
Q ss_pred HHHHHHHHHHHhCCCC
Q 013800 341 GAEEYFSRAILANPGD 356 (436)
Q Consensus 341 ~A~~~~~~al~~~p~~ 356 (436)
+|.+++..|++..|.+
T Consensus 288 eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 288 TANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHhCCcc
Confidence 9999999999987754
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=86.14 E-value=6.5 Score=42.22 Aligned_cols=125 Identities=10% Similarity=0.013 Sum_probs=68.6
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCC---C---CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP---C---HP----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG- 266 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P---~---~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 266 (436)
+++..++|.++...++ +++.++...+..+. . +. .+-..+|.++.-.++ +++.+.+...+..+....
T Consensus 413 ~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~ 489 (963)
T 4ady_A 413 GGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSG 489 (963)
T ss_dssp HHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHH
Confidence 4777888888877664 67888887776432 0 11 234566666665554 466677777766443211
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHH
Q 013800 267 -ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE 326 (436)
Q Consensus 267 -~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 326 (436)
.+-+.+|.++...++ -+-...+++.+..-..++..-...+|..+...|+.+.+..+++.
T Consensus 490 ~~AalALGli~vGTgn-~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~ 549 (963)
T 4ady_A 490 EAAALGMGLCMLGTGK-PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITK 549 (963)
T ss_dssp HHHHHHHHHHHTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHH
T ss_pred HHHHHHHhhhhcccCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHH
Confidence 234455666555553 33334444444443222222223444445566777766666553
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.26 E-value=26 Score=32.41 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013800 355 GDGEIMSQYAKLVWELHHDHDKALCYFE 382 (436)
Q Consensus 355 ~~~~~~~~la~~~~~~g~d~~~A~~~~~ 382 (436)
.+++.+..+|..++..|+ +.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~-~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDF-VYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCC-HHHHHHHHH
Confidence 467788888888888877 888877764
|
| >3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.05 E-value=23 Score=31.69 Aligned_cols=32 Identities=13% Similarity=-0.038 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG 264 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 264 (436)
+-+..+|.+..+.++|++.+++.+++++.+++
T Consensus 32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~~~e 63 (261)
T 3ubw_A 32 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVE 63 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCc
Confidence 34455566666666666666666666666554
|
| >1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A* | Back alignment and structure |
|---|
Probab=83.03 E-value=26 Score=31.44 Aligned_cols=45 Identities=13% Similarity=0.171 Sum_probs=22.4
Q ss_pred HHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013800 341 GAEEYFSRAIL-----ANPGDGE---IMSQYAKLVWELHHDHDKALCYFERAV 385 (436)
Q Consensus 341 ~A~~~~~~al~-----~~p~~~~---~~~~la~~~~~~g~d~~~A~~~~~~al 385 (436)
.|...|+.|+. +.|.+|. ...+.+..|+..-++.++|..+.++|+
T Consensus 153 ~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 153 STLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (260)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45555555553 2444442 234444445543333666666665555
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 436 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-14 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-11 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-09 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-09 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.001 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 5e-11 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 1e-05 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-04 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-08 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-04 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 2e-07 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 2e-04 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 4e-07 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 2e-05 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 0.003 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 2e-04 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 3e-04 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 3e-04 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 0.002 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 0.003 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 4e-04 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 7e-04 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 0.001 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 0.001 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 0.002 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.003 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 0.003 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.4 bits (176), Expect = 2e-14
Identities = 39/210 (18%), Positives = 72/210 (34%), Gaps = 24/210 (11%)
Query: 195 PGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDY 254
P F DA + ++ A Y R + P H ++ N A + ++G + A D
Sbjct: 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT 259
Query: 255 YNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314
Y A P +++ A + E A + A P ++ L A E
Sbjct: 260 YRRAIELQPHFPDAYCNLANALKEKG-SVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318
Query: 315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDH 374
G++E A + +A+ P S A ++ +
Sbjct: 319 ----------------------GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ-GKL 355
Query: 375 DKALCYFERAVQASPADSHVLAAYACFLWE 404
+AL +++ A++ SP + + L E
Sbjct: 356 QEALMHYKEAIRISPTFADAYSNMGNTLKE 385
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.5 bits (153), Expect = 1e-11
Identities = 33/216 (15%), Positives = 71/216 (32%), Gaps = 24/216 (11%)
Query: 195 PGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDY 254
P F A + + + A ++++ + P N +L++ RA
Sbjct: 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225
Query: 255 YNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314
Y A P A + +E A+ + RA P + A L E
Sbjct: 226 YLRALSLSPNHAVVHGNLACVYYEQGLID-LAIDTYRRAIELQPHFPDAYCNLANALKEK 284
Query: 315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDH 374
E AE+ ++ A+ P + ++ A + E +
Sbjct: 285 GSVAE----------------------AEDCYNTALRLCPTHADSLNNLANIKREQG-NI 321
Query: 375 DKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410
++A+ + +A++ P + + A L + + ++
Sbjct: 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.4 bits (137), Expect = 1e-09
Identities = 33/227 (14%), Positives = 67/227 (29%), Gaps = 12/227 (5%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
D AE + ++ + P + +L + + + L R+ + A +P E++
Sbjct: 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73
Query: 273 AKL-----------VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321
+ H + + LAA + A + D
Sbjct: 74 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133
Query: 322 KAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYF 381
+++ G LE A+ + +AI P S + A+ +F
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE-IWLAIHHF 192
Query: 382 ERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGA 428
E+AV P L E + + + ++P
Sbjct: 193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.8 bits (133), Expect = 4e-09
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 1/122 (0%)
Query: 195 PGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDY 254
P F DA + + AEAE+ Y + P H L N A + +++G++ A
Sbjct: 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 327
Query: 255 YNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314
Y A P + A ++ + + Q AL +++ A +P ++ + L EM
Sbjct: 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQ-EALMHYKEAIRISPTFADAYSNMGNTLKEM 386
Query: 315 ED 316
+D
Sbjct: 387 QD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 3e-05
Identities = 9/68 (13%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL 395
GD E AE + + P + ++ + + ++ D++ + A++ +P +
Sbjct: 12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQC-RRLDRSAHFSTLAIKQNPLLAEAY 70
Query: 396 AAYACFLW 403
+
Sbjct: 71 SNLGNVYK 78
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 2e-04
Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Query: 239 AQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAP 298
A + GD AE + +P + + + + ++ R R+ + A P
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLD-RSAHFSTLAIKQNP 64
Query: 299 QDSNILAAYACFLWEM 314
+ + E
Sbjct: 65 LLAEAYSNLGNVYKER 80
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 0.001
Identities = 30/259 (11%), Positives = 68/259 (26%), Gaps = 46/259 (17%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH--------------- 257
+ + I + P N + +++G L A ++Y H
Sbjct: 48 RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107
Query: 258 ------------------ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ 299
+ + D + + A + +A P
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167
Query: 300 DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP------------IQSKGDLEGAEEYFS 347
+ + C + E+ + + P ++ + A +
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227
Query: 348 RAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEE 407
RA+ +P + A + +E D A+ + RA++ P A L E
Sbjct: 228 RALSLSPNHAVVHGNLACVYYEQG-LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 286
Query: 408 DEDDSKSSDQFQQVAPIRQ 426
+ + ++ P
Sbjct: 287 VAEAEDCYNTALRLCPTHA 305
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 60.8 bits (147), Expect = 5e-11
Identities = 21/152 (13%), Positives = 35/152 (23%), Gaps = 22/152 (14%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
+A E I P L ++ +LL GD RA++ + P Q
Sbjct: 11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70
Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
LV + A L ++
Sbjct: 71 RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVS------------------ 112
Query: 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYA 364
D E E + G + + +
Sbjct: 113 ----QDYEQVSELALQIEELRQEKGFLANDTS 140
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 44.3 bits (104), Expect = 1e-05
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHV 394
S+G L+ A E AI A+P D + S + +L+ D ++A ++++ P
Sbjct: 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCID-GDFERADEQLMQSIKLFPEYLPG 66
Query: 395 LAAYACFLWETEEDED 410
+ + + +D
Sbjct: 67 ASQLRHLVKAAQARKD 82
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 40.0 bits (93), Expect = 3e-04
Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 22/144 (15%)
Query: 286 ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY 345
AL A A+P+D+++ +++ L GD E A+E
Sbjct: 15 ALELLIEAIKASPKDASLRSSFIELLCID----------------------GDFERADEQ 52
Query: 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET 405
++I P SQ LV D A V + +
Sbjct: 53 LMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVS 112
Query: 406 EEDEDDSKSSDQFQQVAPIRQGAV 429
++ E S+ + Q +++ +
Sbjct: 113 QDYEQVSELALQIEELRQEKGFLA 136
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (131), Expect = 1e-08
Identities = 22/220 (10%), Positives = 49/220 (22%), Gaps = 48/220 (21%)
Query: 214 SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESW---- 269
S ++ +Y ++ A++ + L +D Y + D
Sbjct: 2 SLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQAL---QDLYQKMLVTDLEYALDKKVEQ 58
Query: 270 ------------------------------MQYAKLVWELHRDQHRALTYFERAALAAPQ 299
+ + + L
Sbjct: 59 DLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLP 118
Query: 300 DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS----------KGDLEGAEEYFSRA 349
+ + K Q + + AE Y+ A
Sbjct: 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHA 178
Query: 350 ILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389
P +G+ +Q A ++ DH + Y+ R++
Sbjct: 179 AQLVPSNGQPYNQLA-ILASSKGDHLTTIFYYCRSIAVKF 217
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (94), Expect = 3e-04
Identities = 21/185 (11%), Positives = 39/185 (21%), Gaps = 30/185 (16%)
Query: 197 FDDAGEVVDLIMPNFDDSAEAEEY-----YKRMIDEYPCHPLLLRN---YAQLLQKKGDL 248
D + + + + + E+ +K I N L
Sbjct: 36 LQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFL 95
Query: 249 YRAEDYYNHATMA-------DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS 301
A +Y D Q ++ + + Q
Sbjct: 96 EAASGFYTQLLQELCTVFNVDLPCRVKSSQLG-IISNKQTHTSAIVKPQSSSCSYICQHC 154
Query: 302 NILAAYACFLWEMEDDGEDDKAQEEHIQVLP------------IQSKGDLEGAEEYFSRA 349
L + + Q++P SKGD Y+ R+
Sbjct: 155 --LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212
Query: 350 ILANP 354
I
Sbjct: 213 IAVKF 217
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.0 bits (118), Expect = 2e-07
Identities = 25/200 (12%), Positives = 52/200 (26%), Gaps = 27/200 (13%)
Query: 237 NYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQH------------ 284
N + + R Y + + W + A+ + + +
Sbjct: 21 NPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 80
Query: 285 -RALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK------ 336
A +ERA ++ + AYA + + + + I
Sbjct: 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQY 140
Query: 337 -------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389
++ F +A + A + + D A FE ++
Sbjct: 141 MKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG 200
Query: 390 ADSHVLAAYACFLWETEEDE 409
+ AY +L ED
Sbjct: 201 DIPEYVLAYIDYLSHLNEDN 220
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.1 bits (95), Expect = 2e-04
Identities = 22/158 (13%), Positives = 44/158 (27%), Gaps = 21/158 (13%)
Query: 267 ESWMQYAKLVWELH---------RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDD 317
+ W +Y + WE R + +E+ L +I A +L +
Sbjct: 9 DMWKKYIQ--WEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL 66
Query: 318 GEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAI-LANPGDGEIMSQYAKLVWELHHDHDK 376
+ +K + A + RAI + + YA E ++K
Sbjct: 67 LAEKGDMNN--------AKLFSDEAANIYERAISTLLKKNMLLYFAYADYE-ESRMKYEK 117
Query: 377 ALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKS 414
+ R + D ++ E +
Sbjct: 118 VHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 155
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.2 bits (116), Expect = 4e-07
Identities = 18/193 (9%), Positives = 44/193 (22%), Gaps = 11/193 (5%)
Query: 206 LIMPNFDDSAEAEEYYKRMIDEYPC-HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG 264
L + A E R ++ Q + + +
Sbjct: 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 176
Query: 265 DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY--------ACFLWEMED 316
+ SW + L+ +LH + ++ ++ + + +
Sbjct: 177 NYSSWHYRSCLLPQLHPQP-DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL 235
Query: 317 DGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDK 376
G + + V + + N + + + L +
Sbjct: 236 LGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL-LYEKE 294
Query: 377 ALCYFERAVQASP 389
L YF P
Sbjct: 295 TLQYFSTLKAVDP 307
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.0 bits (100), Expect = 2e-05
Identities = 30/173 (17%), Positives = 47/173 (27%), Gaps = 12/173 (6%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
EA Y R I P + N A K +A A D ++
Sbjct: 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78
Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
+ E+ A+ +RA A + + + +E I
Sbjct: 79 GQCQLEMESYD-EAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQES 137
Query: 333 I-------QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKAL 378
+ E E R + DG I +Q A + HDK +
Sbjct: 138 ELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQA----CIEAKHDKYM 186
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.5 bits (83), Expect = 0.003
Identities = 23/183 (12%), Positives = 39/183 (21%), Gaps = 23/183 (12%)
Query: 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAA 294
L+ L A Y A +P + A ++ + +
Sbjct: 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQA--------- 57
Query: 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP 354
A +E DG+ KA Q + A RA
Sbjct: 58 ------------LADCRRALELDGQSVKAHFFLGQCQ--LEMESYDEAIANLQRAYSLAK 103
Query: 355 GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKS 414
+ R Q S S++ A E+ +
Sbjct: 104 EQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHE 163
Query: 415 SDQ 417
+
Sbjct: 164 GHE 166
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 39.9 bits (92), Expect = 2e-04
Identities = 17/165 (10%), Positives = 42/165 (25%), Gaps = 8/165 (4%)
Query: 219 EYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278
E ++ E +++ + K G +A Y + + +K
Sbjct: 2 ESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKAS-- 59
Query: 279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGD 338
+ + A A C D + + + +
Sbjct: 60 ---ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS---ANEKGLYRRGEAQLLMNE 113
Query: 339 LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER 383
E A+ F + + NP + Q + +++ +
Sbjct: 114 FESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYAN 158
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.3 bits (90), Expect = 3e-04
Identities = 21/169 (12%), Positives = 47/169 (27%), Gaps = 13/169 (7%)
Query: 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ 271
+D+ + +++ L+N K + A Y G +
Sbjct: 11 EDADVDLKDVDKILLISE----DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAED 66
Query: 272 YAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331
+L + L + + L + + + + Q L
Sbjct: 67 ADGA--KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGL 124
Query: 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL--HHDHDKAL 378
+ + A +A P D I ++ K+ ++ D +KA
Sbjct: 125 K-----EYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA 168
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (93), Expect = 3e-04
Identities = 24/209 (11%), Positives = 58/209 (27%), Gaps = 9/209 (4%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
D A ++ + + P H + + A + D ++ +
Sbjct: 34 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRC-LELKPDNQTALMA 92
Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
+ + Q +A P ++++
Sbjct: 93 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS------- 145
Query: 333 IQSKGDLEGAEEYFSRAI-LANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391
+ S +E F A+ L + +++ L ++DKA+ F A+ P D
Sbjct: 146 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 205
Query: 392 SHVLAAYACFLWETEEDEDDSKSSDQFQQ 420
+ L + E+ + + +
Sbjct: 206 YLLWNKLGATLANGNQSEEAVAAYRRALE 234
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (86), Expect = 0.002
Identities = 28/174 (16%), Positives = 50/174 (28%), Gaps = 11/174 (6%)
Query: 214 SAEAEEYYKRMID-EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
SA ++ Y+ + HP ++GDL A + A DP E+W
Sbjct: 1 SATYDKGYQFEEENPLRDHPQPF-EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYL 59
Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332
E ++ ++ R P + L A A + + + ++ P
Sbjct: 60 GTTQAENEQELLA-ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 118
Query: 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQ 386
+ A G G S+ + F AV+
Sbjct: 119 AY--------AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (84), Expect = 0.003
Identities = 15/97 (15%), Positives = 31/97 (31%)
Query: 210 NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESW 269
N + S EA Y+R ++ P + N G A +++ A
Sbjct: 218 NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 277
Query: 270 MQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306
+ + + AL+ ++ D+ L+
Sbjct: 278 GEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 314
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 38.5 bits (88), Expect = 4e-04
Identities = 19/136 (13%), Positives = 43/136 (31%), Gaps = 7/136 (5%)
Query: 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAA 294
++ KK ++ A Y A + +++ + ++ +
Sbjct: 20 IKEEGNEFFKKNEINEAIVKYKEALDFFI---HTEEWDDQILLDKKKNIEISCNLNLATC 76
Query: 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP 354
+D A + + + + + G LE A+E +A NP
Sbjct: 77 YNKNKDYP----KAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 132
Query: 355 GDGEIMSQYAKLVWEL 370
+ +I + Y V +L
Sbjct: 133 NNLDIRNSYELCVNKL 148
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 7e-04
Identities = 16/152 (10%), Positives = 41/152 (26%), Gaps = 8/152 (5%)
Query: 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAA 294
++ + K+G +A Y + + A+ L R ++ A
Sbjct: 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL-----RLASHLNLAM 70
Query: 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP 354
+ A + + + + + + D E A F + + P
Sbjct: 71 CHLKLQAFS---AAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127
Query: 355 GDGEIMSQYAKLVWELHHDHDKALCYFERAVQ 386
+ +Q A + + + +
Sbjct: 128 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 159
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 38.3 bits (87), Expect = 0.001
Identities = 22/193 (11%), Positives = 45/193 (23%), Gaps = 16/193 (8%)
Query: 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272
A A + + + P P + L + G+ + A + +
Sbjct: 52 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN-FDAAYEAFDSVLELDPTYNYAHLN 110
Query: 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMED--------------DG 318
+ A P D ++++ D
Sbjct: 111 RGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170
Query: 319 EDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKAL 378
E + I + +E + + E K + D D A
Sbjct: 171 EQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGK-YYLSLGDLDSAT 229
Query: 379 CYFERAVQASPAD 391
F+ AV + +
Sbjct: 230 ALFKLAVANNVHN 242
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.2 bits (82), Expect = 0.001
Identities = 12/132 (9%), Positives = 32/132 (24%), Gaps = 23/132 (17%)
Query: 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAA 294
L+ G++ A Y+ A DP + + + + Q
Sbjct: 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKA--------- 56
Query: 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP 354
D + D + + ++ E A+ + +
Sbjct: 57 --------------YEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEA 102
Query: 355 GDGEIMSQYAKL 366
+ ++ +
Sbjct: 103 NNPQLKEGLQNM 114
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.0 bits (82), Expect = 0.002
Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Query: 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275
A ++Y + + P + + N A + +KGD + + A + E + Q AK
Sbjct: 22 TALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81
Query: 276 VWELHR------DQHRALTYFERAALAAPQDSNILAAY 307
+ A+ ++ + +LA + ++L
Sbjct: 82 YARIGNSYFKEEKYKDAIHFYNK-SLAEHRTPDVLKKC 118
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.1 bits (80), Expect = 0.003
Identities = 12/126 (9%), Positives = 30/126 (23%), Gaps = 22/126 (17%)
Query: 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY--AKLVWELHRDQHRALTYFER 292
+ L DL + E + A + +Y + + D + + E
Sbjct: 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEE 61
Query: 293 AALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA 352
++ + + + E A +Y +
Sbjct: 62 LLPKGSKEEQRDYVFYLAVGNYRLK--------------------EYEKALKYVRGLLQT 101
Query: 353 NPGDGE 358
P + +
Sbjct: 102 EPQNNQ 107
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 37.2 bits (84), Expect = 0.003
Identities = 24/180 (13%), Positives = 46/180 (25%), Gaps = 14/180 (7%)
Query: 210 NFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG 264
N + EAE K ++E P + ++L KG+L R+
Sbjct: 24 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE----- 78
Query: 265 DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ 324
+ Q+ + L ++ F + L ++ A E +
Sbjct: 79 --QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI--NEQHLEQLPMHEF 134
Query: 325 EEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384
I+ + + L+ AE I + L
Sbjct: 135 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQ 194
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 436 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.91 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.88 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.87 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.84 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.72 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.71 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.7 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.66 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.66 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.66 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.65 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.64 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.64 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.57 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.57 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.54 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.53 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.5 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.5 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.5 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.5 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.49 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.49 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.47 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.47 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.47 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.47 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.46 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.44 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.44 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.44 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.43 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.42 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.42 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.4 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.28 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.11 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.09 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.06 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.04 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.03 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.02 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.98 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.84 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.75 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.21 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.17 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.15 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.97 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.54 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.47 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 94.84 | |
| d1o9da_ | 236 | 14-3-3-like protein C {Common tobacco (Nicotiana t | 92.21 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 89.2 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 89.12 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=8.2e-26 Score=217.21 Aligned_cols=255 Identities=14% Similarity=0.106 Sum_probs=193.9
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+.+.|...+..++...| .+..+|..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..+.+
T Consensus 14 ~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 92 (388)
T d1w3ba_ 14 DFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92 (388)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccc
Confidence 44467777888888888 78888999999999999999999999999999999999999999999999999998888877
Q ss_pred HHHhCCCC--------------------------------------------------------------------HHHH
Q 013800 258 ATMADPGD--------------------------------------------------------------------GESW 269 (436)
Q Consensus 258 al~~~p~~--------------------------------------------------------------------~~~~ 269 (436)
++...|.. +.++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (388)
T d1w3ba_ 93 ALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW 172 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHH
Confidence 76655533 4556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcC
Q 013800 270 MQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKG 337 (436)
Q Consensus 270 ~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g 337 (436)
..+|.++...+ ++++|...++++++++|++..++..+|.++...|++++|...+.+.... .++...|
T Consensus 173 ~~l~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 251 (388)
T d1w3ba_ 173 SNLGCVFNAQG-EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG 251 (388)
T ss_dssp HHHHHHHHTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HhhcccccccC-cHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCC
Confidence 66676666665 4888888888888888888888888888888888888888877765554 4555566
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH----------------------------------HHHHHhcCCHHHHHHHHHH
Q 013800 338 DLEGAEEYFSRAILANPGDGEIMSQYA----------------------------------KLVWELHHDHDKALCYFER 383 (436)
Q Consensus 338 ~~~~A~~~~~~al~~~p~~~~~~~~la----------------------------------~~~~~~g~d~~~A~~~~~~ 383 (436)
++++|+..|+++++++|+++.++..+| .++...|+ +++|+..|++
T Consensus 252 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~ 330 (388)
T d1w3ba_ 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN-IEEAVRLYRK 330 (388)
T ss_dssp CHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCC-HHHHHHHHHH
Confidence 666666666666666655555555544 45555566 7777777777
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhhc
Q 013800 384 AVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANVY 435 (436)
Q Consensus 384 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~-~an~y 435 (436)
+++++|+++.++..+|.++..+|++++|+..|+++++++|++..+.. .+++|
T Consensus 331 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~ 383 (388)
T d1w3ba_ 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp HTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 77777888888888888888888888888888888888888776654 55554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.9e-26 Score=217.66 Aligned_cols=228 Identities=11% Similarity=0.041 Sum_probs=199.3
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
..+...|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|.++++++|++...|..+|.++..
T Consensus 20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN 99 (323)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHH---------------HHHHHHHHHccCchHHHHHHHHHHHH-------------
Q 013800 279 LHRDQHRALTYFERAALAAPQDSNIL---------------AAYACFLWEMEDDGEDDKAQEEHIQV------------- 330 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~---------------~~la~~~~~~g~~~~A~~~~~~~~~~------------- 330 (436)
.+. +++|+.++++++...|.....+ ......+...+.+.++...+.+++..
T Consensus 100 ~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l 178 (323)
T d1fcha_ 100 ESL-QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 178 (323)
T ss_dssp TTC-HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred ccc-ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 875 9999999999999988743321 11112233344556666666665543
Q ss_pred -hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q 013800 331 -LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDE 409 (436)
Q Consensus 331 -~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 409 (436)
.++...|++++|+.+|++++..+|+++.+|..+|.++..+|+ +++|+..|+++++++|+++.++..+|.++..+|+++
T Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~ 257 (323)
T d1fcha_ 179 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ-SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 257 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHhhhhcccccccccccccccchhhhhhccccccc-chhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHH
Confidence 678899999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhH
Q 013800 410 DDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 410 ~A~~~~~~al~l~p~~~~a 428 (436)
+|+..|++++++.|+....
T Consensus 258 ~A~~~~~~al~l~p~~~~~ 276 (323)
T d1fcha_ 258 EAVEHFLEALNMQRKSRGP 276 (323)
T ss_dssp HHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHhCCcChhh
Confidence 9999999999998876654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=7e-26 Score=217.71 Aligned_cols=207 Identities=16% Similarity=0.139 Sum_probs=195.7
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..+++++...|.....+..+|.++..
T Consensus 170 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 249 (388)
T d1w3ba_ 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHH
Confidence 34566777888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHH
Q 013800 279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYF 346 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~ 346 (436)
.++ +++|+.+|+++++++|+++.++..+|.++...|++++|...+..++.. .++...|++++|+.+|
T Consensus 250 ~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 328 (388)
T d1w3ba_ 250 QGL-IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 328 (388)
T ss_dssp TTC-HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHH
Confidence 875 999999999999999999999999999999999999999999977766 7888999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 013800 347 SRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEE 407 (436)
Q Consensus 347 ~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 407 (436)
+++++++|+++.++.++|.++..+|+ +++|+..|+++++++|+++.++.++|.+|.++||
T Consensus 329 ~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 329 RKALEVFPEFAAAHSNLASVLQQQGK-LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHTTTC-CHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999 9999999999999999999999999999999986
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=3.5e-24 Score=203.75 Aligned_cols=216 Identities=12% Similarity=0.107 Sum_probs=196.9
Q ss_pred hcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHH
Q 013800 189 GLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG-DLYRAEDYYNHATMADPGDGE 267 (436)
Q Consensus 189 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~ 267 (436)
++.+.+ +...++..+|.++.+.+.+++|+.+++++|+++|++..+|.++|.++...| ++++|+.+++++++.+|++..
T Consensus 35 ~I~~~p-~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~ 113 (315)
T d2h6fa1 35 QIIYSD-KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ 113 (315)
T ss_dssp EECCCH-HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred ccccCH-HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhh
Confidence 456666 677889999999999999999999999999999999999999999999987 599999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHH
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFS 347 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~ 347 (436)
+|..+|.++..+++ +++|+.+|+++++++|++..+|.++| .++...|++++|+.+|+
T Consensus 114 a~~~~~~~~~~l~~-~~eAl~~~~kal~~dp~n~~a~~~~~----------------------~~~~~~~~~~~Al~~~~ 170 (315)
T d2h6fa1 114 VWHHRRVLVEWLRD-PSQELEFIADILNQDAKNYHAWQHRQ----------------------WVIQEFKLWDNELQYVD 170 (315)
T ss_dssp HHHHHHHHHHHHTC-CTTHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHHTCCTTHHHHHH
T ss_pred HHHHHhHHHHhhcc-HHHHHHHHhhhhhhhhcchHHHHHHH----------------------HHHHHHHhhHHHHHHHH
Confidence 99999999999875 99999999999999999999999999 88888999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013800 348 RAILANPGDGEIMSQYAKLVWELHHD-----HDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 348 ~al~~~p~~~~~~~~la~~~~~~g~d-----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 422 (436)
++++++|.+..+|+++|.++...+.. +++|+..+.++++++|++..+|..++.++...| .+++.+.+.+++.+.
T Consensus 171 ~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~ 249 (315)
T d2h6fa1 171 QLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQ 249 (315)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHT
T ss_pred HHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhC
Confidence 99999999999999999998877651 478999999999999999999999998865544 688999999999999
Q ss_pred CCChhHH
Q 013800 423 PIRQGAV 429 (436)
Q Consensus 423 p~~~~a~ 429 (436)
|......
T Consensus 250 ~~~~~~~ 256 (315)
T d2h6fa1 250 PSHSSPY 256 (315)
T ss_dssp TTCCCHH
T ss_pred CCcCCHH
Confidence 8876543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=8.2e-23 Score=193.53 Aligned_cols=237 Identities=11% Similarity=0.033 Sum_probs=203.2
Q ss_pred CCCChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+..+|..++..++..+| .+..+|..+|.++...|++++|+.+|+++++++|++...+..+|.++...|++++|++.+++
T Consensus 34 ~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 112 (323)
T d1fcha_ 34 DLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRD 112 (323)
T ss_dssp CHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhh
Confidence 55588899999999999 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHH---------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHH
Q 013800 258 ATMADPGDGESWM---------------QYAKLVWELHRDQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGED 320 (436)
Q Consensus 258 al~~~p~~~~~~~---------------~la~~~~~~~~d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A 320 (436)
++...|.....+. .....+...+. +.+|+..|++++.++|+ ++.++..+|.++...|++++|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A 191 (323)
T d1fcha_ 113 WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL-FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 191 (323)
T ss_dssp HHHTSTTTGGGCC---------------CTTHHHHHHHH-HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhH-HHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhh
Confidence 9999887533211 11112233343 88899999999999887 567788899999999999999
Q ss_pred HHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013800 321 DKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 321 ~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~ 388 (436)
+..+++++.. .++...|++++|+.+|+++++++|+++.+|+++|.++..+|+ +++|+..|+++++++
T Consensus 192 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~ 270 (323)
T d1fcha_ 192 VDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA-HREAVEHFLEALNMQ 270 (323)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHH
T ss_pred hcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhC
Confidence 9999988776 788999999999999999999999999999999999999999 999999999999999
Q ss_pred CCCHH-----------HHHHHHHHHHHCCChHHHHHHHHH
Q 013800 389 PADSH-----------VLAAYACFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 389 p~~~~-----------~~~~la~~~~~~g~~~~A~~~~~~ 417 (436)
|++.. +|..++.++..+|+.+.+.....+
T Consensus 271 p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~~~ 310 (323)
T d1fcha_ 271 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 310 (323)
T ss_dssp HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 88764 456677788888887765544433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=4.7e-22 Score=188.89 Aligned_cols=182 Identities=13% Similarity=0.145 Sum_probs=172.3
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 225 IDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNIL 304 (436)
Q Consensus 225 l~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~ 304 (436)
|..+|+..+++..+|.++.+.+.+++|++.++++++++|++..+|..+|.++...++++++|+.+++++++++|++..+|
T Consensus 36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~ 115 (315)
T d2h6fa1 36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 115 (315)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHH
Confidence 44567788999999999999999999999999999999999999999999999988789999999999999999999999
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013800 305 AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 305 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~a 384 (436)
..+| .++..+|++++|+..+.++++++|++..+|.++|.++..+|+ +++|+..|+++
T Consensus 116 ~~~~----------------------~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~-~~~Al~~~~~a 172 (315)
T d2h6fa1 116 HHRR----------------------VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL-WDNELQYVDQL 172 (315)
T ss_dssp HHHH----------------------HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-CTTHHHHHHHH
T ss_pred HHHh----------------------HHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 9999 888899999999999999999999999999999999999999 99999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCC------hHHHHHHHHHHHhhCCCChhHH
Q 013800 385 VQASPADSHVLAAYACFLWETEE------DEDDSKSSDQFQQVAPIRQGAV 429 (436)
Q Consensus 385 l~~~p~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~l~p~~~~a~ 429 (436)
++++|.+..+|.+++.++...+. +++|+..+.+++.+.|....+.
T Consensus 173 l~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~ 223 (315)
T d2h6fa1 173 LKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAW 223 (315)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHH
Confidence 99999999999999999998887 4789999999999999977654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=5.6e-21 Score=174.85 Aligned_cols=204 Identities=9% Similarity=-0.039 Sum_probs=163.5
Q ss_pred ChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLV 276 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 276 (436)
.+..+..+|.++...|++++|+..|+++++++|+++.+|..+|.++..+|++++|+..|+++++++|+++.++..+|.++
T Consensus 36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHH
Confidence 44688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013800 277 WELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 277 ~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
...++ +++|+..|+++++.+|.+......++ ..+...+..+.+...........+..
T Consensus 116 ~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (259)
T d1xnfa_ 116 YYGGR-DKLAQDDLLAFYQDDPNDPFRSLWLY----------------------LAEQKLDEKQAKEVLKQHFEKSDKEQ 172 (259)
T ss_dssp HHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred HHHhh-HHHHHHHHHHHHhhccccHHHHHHHH----------------------HHHHHhhhHHHHHHHHHHhhccchhh
Confidence 99875 99999999999999999999888887 55555565555555555555554443
Q ss_pred HHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013800 357 GEIMSQYAKLV----WELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 357 ~~~~~~la~~~----~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 426 (436)
.. +. +...+ ...+. +..+...+...+...|....+++.+|.++..+|++++|+.+|++++..+|+..
T Consensus 173 ~~-~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 173 WG-WN-IVEFYLGNISEQTL-MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp TH-HH-HHHHHTTSSCHHHH-HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred hh-hh-HHHHHHHHHHHHHH-HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 22 11 11111 12223 45555566666666777777888888888888888888888888888888643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.84 E-value=7.4e-22 Score=188.57 Aligned_cols=245 Identities=9% Similarity=-0.016 Sum_probs=212.4
Q ss_pred CChHHHHHhhcCCCCCCChhhhhhHhhhh----------hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Q 013800 180 VSPPMYLAMGLGISVPGFDDAGEVVDLIM----------PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGD-- 247 (436)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~----------~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~-- 247 (436)
..+...+.+++.+.| ++..+|...+.++ ...|++.+|+.+++++++.+|++..+|..+|.++...++
T Consensus 46 ~~al~~~~~~l~~~P-~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~ 124 (334)
T d1dcea1 46 ESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (334)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcccc
Confidence 356677888888888 7887776655543 344558999999999999999999999999999988765
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHH
Q 013800 248 LYRAEDYYNHATMADPGDGESWM-QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE 326 (436)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~~~~~-~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 326 (436)
+++|+..++++++.+|.+..++. .+|.++...+ .+++|+.++++++.++|.+..+|..+|.++...|++++|...+.+
T Consensus 125 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~ 203 (334)
T d1dcea1 125 WARELELCARFLEADERNFHCWDYRRFVAAQAAV-APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (334)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC-CHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred HHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhcc-ccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 89999999999999999999876 4555655555 599999999999999999999999999999999999887665543
Q ss_pred HHHH--------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 327 HIQV--------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAY 398 (436)
Q Consensus 327 ~~~~--------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~l 398 (436)
.+.. ..+...+..+++...|.+++...|.+...+..++.++...++ +.+|+..+.+++..+|.+..++..+
T Consensus 204 ~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~p~~~~~~~~l 282 (334)
T d1dcea1 204 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQS-ELESCKELQELEPENKWCLLTIILL 282 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHH-HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhh-HHHHHHHHHHHHhhCchHHHHHHHH
Confidence 3332 445667888899999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 399 ACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 399 a~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
|.++..+|++++|+++|+++++++|....
T Consensus 283 ~~~~~~~~~~~eA~~~~~~ai~ldP~~~~ 311 (334)
T d1dcea1 283 MRALDPLLYEKETLQYFSTLKAVDPMRAA 311 (334)
T ss_dssp HHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcccHH
Confidence 99999999999999999999999997543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=2.1e-16 Score=148.73 Aligned_cols=245 Identities=13% Similarity=0.058 Sum_probs=197.9
Q ss_pred cCCCChHHHHHhhcCCCCCCC----hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcC
Q 013800 177 ERPVSPPMYLAMGLGISVPGF----DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH------PLLLRNYAQLLQKKG 246 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~la~~~~~~g 246 (436)
.+++.|..++..++...+... ..++..+|.++...|++++|+..|+++++..+.. ...+..++.++...|
T Consensus 26 g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (366)
T d1hz4a_ 26 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG 105 (366)
T ss_dssp TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 477788888888888877433 2467788999999999999999999988865432 356778888899999
Q ss_pred CHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHH
Q 013800 247 DLYRAEDYYNHATMADPG--------DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ-----DSNILAAYACFLWE 313 (436)
Q Consensus 247 ~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~ 313 (436)
++..|+..+.+++.+.+. ....+..+|.++...+. ++.|...+++++...+. ...++..++.++..
T Consensus 106 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (366)
T d1hz4a_ 106 FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR-LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA 184 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcc-hhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHh
Confidence 999999999998876321 23466678888888764 99999999999887664 34566778888888
Q ss_pred ccCchHHHHHHHHHHHH-------------------hHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHh
Q 013800 314 MEDDGEDDKAQEEHIQV-------------------LPIQSKGDLEGAEEYFSRAILANPGD----GEIMSQYAKLVWEL 370 (436)
Q Consensus 314 ~g~~~~A~~~~~~~~~~-------------------~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~ 370 (436)
.+....+...+.+.... .++...|++++|...+++++...+.+ ...+.++|.++...
T Consensus 185 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 264 (366)
T d1hz4a_ 185 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL 264 (366)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc
Confidence 88888888887765554 67788999999999999999887654 46778899999999
Q ss_pred cCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013800 371 HHDHDKALCYFERAVQA------SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 371 g~d~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 423 (436)
|+ +++|+..+++++.. .|....++..+|.++..+|++++|++.+++++++.+
T Consensus 265 g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 265 GE-FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp TC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 99 99999999999854 244557899999999999999999999999998753
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=4.1e-17 Score=148.64 Aligned_cols=157 Identities=10% Similarity=-0.008 Sum_probs=138.1
Q ss_pred CCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013800 211 FDDSAEAEEYYKRMIDEYP----CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 211 ~g~~~~A~~~~~~al~~~P----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
..+.+.|+..+++++...+ ..+.+++.+|.+|...|++++|+..|+++++++|+++.+|+.+|.++...++ +++|
T Consensus 12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~-~~~A 90 (259)
T d1xnfa_ 12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN-FDAA 90 (259)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-HHHH
T ss_pred cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHH-HHHh
Confidence 3567888888999887543 3457999999999999999999999999999999999999999999999975 9999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 287 LTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL 366 (436)
Q Consensus 287 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (436)
+.+|+++++++|+++.++.++| .++..+|++++|+..|+++++.+|.+......++.+
T Consensus 91 ~~~~~~al~~~p~~~~a~~~lg----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 148 (259)
T d1xnfa_ 91 YEAFDSVLELDPTYNYAHLNRG----------------------IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA 148 (259)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhhhHHHHHHhhhhhhHHHHH----------------------HHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 9999999999999999999999 888899999999999999999999999999999988
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCC
Q 013800 367 VWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 367 ~~~~g~d~~~A~~~~~~al~~~p~~ 391 (436)
....+. .+.+...........+..
T Consensus 149 ~~~~~~-~~~~~~~~~~~~~~~~~~ 172 (259)
T d1xnfa_ 149 EQKLDE-KQAKEVLKQHFEKSDKEQ 172 (259)
T ss_dssp HHHHCH-HHHHHHHHHHHHHSCCCS
T ss_pred HHHhhh-HHHHHHHHHHhhccchhh
Confidence 888877 666655555555555543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=7.2e-18 Score=160.45 Aligned_cols=217 Identities=9% Similarity=-0.048 Sum_probs=188.9
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCC--CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFD--DSAEAEEYYKRMIDEYPCHPLLL-RNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~P~~~~~~-~~la~~~~~~g~~~~A~~~~~~ 257 (436)
++..++..++...+ .+..+|..+|.++...+ ++++|+..++++++.+|.+..++ ...|.++...+.+++|+..+++
T Consensus 91 ~al~~~~~~l~~~p-k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~ 169 (334)
T d1dcea1 91 AELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDS 169 (334)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHH
Confidence 45667788888888 78889999988776655 58999999999999999999876 5677888899999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013800 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
+++.+|.+..+|..+|.++..+++ +++|+..+++++.+.|.....+.. +...+..+++...+...+..
T Consensus 170 ~i~~~p~~~~a~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~a~~~~~~~l~~~~~~~~~ 244 (334)
T d1dcea1 170 LITRNFSNYSSWHYRSCLLPQLHP-QPDSGPQGRLPENVLLKELELVQN----AFFTDPNDQSAWFYHRWLLGRAEPLFR 244 (334)
T ss_dssp TTTTTCCCHHHHHHHHHHHHHHSC-CCCSSSCCSSCHHHHHHHHHHHHH----HHHHCSSCSHHHHHHHHHHSCCCCSSS
T ss_pred HHHcCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHhHHhHHHHHHHHHH----HHHhcchhHHHHHHHHHHHhCcchhhH
Confidence 999999999999999999999985 999999998888888776554443 34566777777777766655
Q ss_pred -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
.++...+++.+|+..+.+++..+|.+..++..+|.++..+|+ +++|+.+|+++++++|.+..+|..++..+..
T Consensus 245 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 245 CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG-HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 777888999999999999999999999999999999999999 9999999999999999999999999887764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=8.2e-16 Score=123.27 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=104.5
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH 280 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 280 (436)
+...|+.++..|++++|+.+|+++++.+|+++.+|.++|.++..+|++++|+..|.++++++|.++.+|+.+|.++..++
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 281 RDQHRALTYFERAALAAPQDSNILAAYACF 310 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 310 (436)
+ +++|+.+|+++++++|+++.++..++.+
T Consensus 86 ~-~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 86 R-FEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp C-HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5 9999999999999999999999998854
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.3e-15 Score=122.08 Aligned_cols=109 Identities=11% Similarity=0.095 Sum_probs=73.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 314 (436)
+...|..++..|++++|+..|+++++.+|.++.+|..+|.++...++ +++|+..|+++++++|+++.+|+++|
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~g------ 78 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD-YQKAYEDGCKTVDLKPDWGKGYSRKA------ 78 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHH------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhccccccccccc-ccccchhhhhHHHhccchhhHHHHHH------
Confidence 45566667777777777777777777777777777777766666653 66666666666666666666666666
Q ss_pred cCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL 366 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (436)
.++..+|++++|+..|+++++++|+++.++..++.+
T Consensus 79 ----------------~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 79 ----------------AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp ----------------HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred ----------------HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 666666666666666666666666666666666654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=2.6e-17 Score=165.50 Aligned_cols=218 Identities=10% Similarity=-0.045 Sum_probs=146.1
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
+|..|+.+++.+.+ +.+.++.++|.++..+|++++| |+++|..+|+.+..+...+.+. ...|..+++.+++..+
T Consensus 4 eA~q~~~qA~~l~p-~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k 77 (497)
T d1ya0a1 4 QSAQYLRQAEVLKA-DMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHHHHG-GGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCC-CCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhcc
Confidence 46788999999998 8899999999999999999876 8999999997766544333332 2235678888888776
Q ss_pred hC--CCCHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC
Q 013800 261 AD--PGDGESWMQ-YAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG 337 (436)
Q Consensus 261 ~~--p~~~~~~~~-la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g 337 (436)
.. ++....... ++.+....+ .|+.|+..|++++.++|.+...+.++| ..+...|
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~a~~-~Y~~ai~~l~~~~~l~~~~~~~~~~lg----------------------~~~~~~~ 134 (497)
T d1ya0a1 78 NRANPNRSEVQANLSLFLEAASG-FYTQLLQELCTVFNVDLPCRVKSSQLG----------------------IISNKQT 134 (497)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHH-HHHHHHHHHTC---------------------------------------------
T ss_pred cccCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCChhhHHHHHHhH----------------------HHHHhCC
Confidence 54 333333333 333333444 489999999999999999999999999 7778888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q 013800 338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 417 (436)
++++|+..+++++..+|. .++.++|.++...|+ +++|+.+|++|++++|+++.++.++|.++...|+..+|+.+|.+
T Consensus 135 ~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~~-~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~r 211 (497)
T d1ya0a1 135 HTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQ-TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR 211 (497)
T ss_dssp --------CCHHHHHHHH--HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHccc-HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888888887664 678888999988888 99999999999999999999999999999999999999999999
Q ss_pred HHhhCCCChhHHh
Q 013800 418 FQQVAPIRQGAVT 430 (436)
Q Consensus 418 al~l~p~~~~a~~ 430 (436)
++.+.|.|..+..
T Consensus 212 al~~~~~~~~a~~ 224 (497)
T d1ya0a1 212 SIAVKFPFPAAST 224 (497)
T ss_dssp HHSSSBCCHHHHH
T ss_pred HHhCCCCCHHHHH
Confidence 9998888877655
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=3.9e-15 Score=125.86 Aligned_cols=109 Identities=17% Similarity=0.109 Sum_probs=64.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 314 (436)
+...|..++..|+|++|+.+|+++++++|+++.+|.++|.++..+++ +++|+.+|+++++++|++..+|..+|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~kal~~~p~~~~a~~~~g------ 85 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC-YGYALGDATRAIELDKKYIKGYYRRA------ 85 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH------
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccc-cchHHHHHHHHHHHcccchHHHHHHH------
Confidence 44455566666666666666666666666666666666655555543 66666666666666666666666555
Q ss_pred cCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL 366 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (436)
.++..+|++++|+..|++++.++|+++.++..++.+
T Consensus 86 ----------------~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~ 121 (159)
T d1a17a_ 86 ----------------ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 121 (159)
T ss_dssp ----------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred ----------------HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 555555666666666666666666655555555544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.66 E-value=7.5e-16 Score=143.60 Aligned_cols=203 Identities=13% Similarity=0.059 Sum_probs=161.1
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEY------PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------G 266 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 266 (436)
..|...|+++...+++++|+.+|.+++++. ++.+.+|.++|.+|..+|++++|+++|++++++.+.. .
T Consensus 38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 117 (290)
T d1qqea_ 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (290)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence 457778899999999999999999999973 2234789999999999999999999999999986554 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013800 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQ------DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
.++..+|.++....+++++|+.+|++++++.+. ...++.++| .++..+|+|+
T Consensus 118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la----------------------~~~~~~g~y~ 175 (290)
T d1qqea_ 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCA----------------------DLKALDGQYI 175 (290)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------HHHHHTTCHH
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHH----------------------HHHHHcChHH
Confidence 678888988876545699999999999987543 234456667 8899999999
Q ss_pred HHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHH--CC
Q 013800 341 GAEEYFSRAILANPGDG-------EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSH-----VLAAYACFLWE--TE 406 (436)
Q Consensus 341 ~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~--~g 406 (436)
+|+..|++++...+... ..+...+.++...|+ +..|...++++++++|.... .+..+..++.. .+
T Consensus 176 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d-~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e 254 (290)
T d1qqea_ 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD-AVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (290)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC-HHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHH
Confidence 99999999999987653 456788888999999 99999999999999886543 34455555444 35
Q ss_pred ChHHHHHHHHHHHhhCCC
Q 013800 407 EDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 407 ~~~~A~~~~~~al~l~p~ 424 (436)
.+++|+..|.++..++|.
T Consensus 255 ~~~eai~~y~~~~~lD~~ 272 (290)
T d1qqea_ 255 QLSEHCKEFDNFMRLDKW 272 (290)
T ss_dssp THHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHhhcCHH
Confidence 688999999888777653
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=5.1e-15 Score=129.37 Aligned_cols=129 Identities=14% Similarity=0.043 Sum_probs=92.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 013800 236 RNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEME 315 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 315 (436)
++.|..+...|++++|++.|.+ +.|.++.+|+++|.+++.++. +++|+.+|+++++++|+++.+|+++|
T Consensus 9 ~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~-~~~A~~~~~kAl~ldp~~~~a~~~~g------- 77 (192)
T d1hh8a_ 9 WNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKN-MTEAEKAFTRSINRDKHLAVAYFQRG------- 77 (192)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH-------
T ss_pred HHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhhhhhHHHHH-------
Confidence 3556666666666666666654 345556666666666666653 67777777777777777776776666
Q ss_pred CchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHhcCCHHHHHH
Q 013800 316 DDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD----------------GEIMSQYAKLVWELHHDHDKALC 379 (436)
Q Consensus 316 ~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~d~~~A~~ 379 (436)
.++.++|++++|+..|++++...+.+ .++++++|.++..+|+ +++|++
T Consensus 78 ---------------~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~-~~~A~~ 141 (192)
T d1hh8a_ 78 ---------------MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE-WKKAEE 141 (192)
T ss_dssp ---------------HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred ---------------HHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCC-HHHHHH
Confidence 66666666677766666666654322 4788999999999999 999999
Q ss_pred HHHHHHHhCCCC
Q 013800 380 YFERAVQASPAD 391 (436)
Q Consensus 380 ~~~~al~~~p~~ 391 (436)
.|.+++.+.|+.
T Consensus 142 ~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 142 QLALATSMKSEP 153 (192)
T ss_dssp HHHHHHTTCCSG
T ss_pred HHHHHHhcCCCc
Confidence 999999999874
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.65 E-value=8.3e-15 Score=137.54 Aligned_cols=219 Identities=16% Similarity=0.110 Sum_probs=167.0
Q ss_pred HHHHHhhcCCCCCCChhhhhhHhhhhhhCC--------------CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCC
Q 013800 183 PMYLAMGLGISVPGFDDAGEVVDLIMPNFD--------------DSAEAEEYYKRMIDE-YPCHPLLLRNYAQLLQKKGD 247 (436)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--------------~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~~g~ 247 (436)
...|.+++...+ ..+..|......+...+ ..++|..+|+++++. .|.+...|..++.++...|+
T Consensus 36 ~~vyerAl~~~~-~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~ 114 (308)
T d2onda1 36 MFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 114 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCC-CCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccc
Confidence 345566666666 56666766666554322 235677777777763 56666777777777777777
Q ss_pred HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHH
Q 013800 248 LYRAEDYYNHATMADPGDG-ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE 326 (436)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 326 (436)
+++|...|++++...|.+. .+|..++.+....++ +++|..+|+++++..|.....+...+
T Consensus 115 ~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~-~~~ar~i~~~al~~~~~~~~~~~~~a------------------ 175 (308)
T d2onda1 115 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAREDARTRHHVYVTAA------------------ 175 (308)
T ss_dssp HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC-HHHHHHHHHHHHTSTTCCTHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCcHHHHHHHH------------------
Confidence 7777777777777777653 466777766666664 77777777777777777777776666
Q ss_pred HHHHhH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHH
Q 013800 327 HIQVLP-IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD----SHVLAAYACF 401 (436)
Q Consensus 327 ~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~----~~~~~~la~~ 401 (436)
.. +...|+.+.|..+|++++..+|+++..|..++..+...|+ +++|..+|++++...|.+ ..+|..+..+
T Consensus 176 ----~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~-~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~f 250 (308)
T d2onda1 176 ----LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE-DNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 250 (308)
T ss_dssp ----HHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred ----HHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 33 3346899999999999999999999999999999999999 999999999999987754 3578888999
Q ss_pred HHHCCChHHHHHHHHHHHhhCCCCh
Q 013800 402 LWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 402 ~~~~g~~~~A~~~~~~al~l~p~~~ 426 (436)
....|+.+.+.++++++.++.|...
T Consensus 251 E~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 251 ESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHcCCHHHHHHHHHHHHHHCcccc
Confidence 9999999999999999999887653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=6e-15 Score=124.70 Aligned_cols=125 Identities=15% Similarity=0.068 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHH
Q 013800 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFS 347 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~ 347 (436)
.+...|..++..++ |++|+.+|+++++++|++..+|.++| .++...|++++|+..|+
T Consensus 12 ~l~~~gn~~~~~~~-y~~A~~~~~~al~~~p~~~~~~~~lg----------------------~~~~~~~~~~~A~~~~~ 68 (159)
T d1a17a_ 12 ELKTQANDYFKAKD-YENAIKFYSQAIELNPSNAIYYGNRS----------------------LAYLRTECYGYALGDAT 68 (159)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHhhhccccchhhhhhhhhhH----------------------HHHHhccccchHHHHHH
Confidence 35567888898875 99999999999999999999999999 89999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HCCChHHHHHHHH
Q 013800 348 RAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLW--ETEEDEDDSKSSD 416 (436)
Q Consensus 348 ~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~ 416 (436)
++++++|++..+|..+|.++..+|+ +++|+..|++++.++|++..++..++.+.. ..+.+++|+....
T Consensus 69 kal~~~p~~~~a~~~~g~~~~~~g~-~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 138 (159)
T d1a17a_ 69 RAIELDKKYIKGYYRRAASNMALGK-FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 138 (159)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcccchHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 9999999999999999999999999 999999999999999999999888877743 4445666665433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=6.6e-15 Score=128.63 Aligned_cols=129 Identities=14% Similarity=0.124 Sum_probs=117.0
Q ss_pred hhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013800 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 281 (436)
.+.|..+...|+|++|+..|.++ .|.++.+|+++|.+|..+|++++|+.+|+++++++|+++.+|.++|.++..+++
T Consensus 9 ~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 9 WNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcc
Confidence 36789999999999999999864 566889999999999999999999999999999999999999999999999985
Q ss_pred CHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH
Q 013800 282 DQHRALTYFERAALAAPQD----------------SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY 345 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~ 345 (436)
+++|+..|++++...+.+ ..+++++| .++...|++++|++.
T Consensus 86 -~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a----------------------~~~~~~~~~~~A~~~ 142 (192)
T d1hh8a_ 86 -YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIA----------------------FMYAKKEEWKKAEEQ 142 (192)
T ss_dssp -HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHH----------------------HHHHHTTCHHHHHHH
T ss_pred -HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHH----------------------HHHHHCCCHHHHHHH
Confidence 999999999999876643 36677888 888999999999999
Q ss_pred HHHHHHhCCCC
Q 013800 346 FSRAILANPGD 356 (436)
Q Consensus 346 ~~~al~~~p~~ 356 (436)
|.+++.+.|+.
T Consensus 143 l~~A~~~~~~~ 153 (192)
T d1hh8a_ 143 LALATSMKSEP 153 (192)
T ss_dssp HHHHHTTCCSG
T ss_pred HHHHHhcCCCc
Confidence 99999999874
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=1.6e-14 Score=134.40 Aligned_cols=179 Identities=12% Similarity=0.043 Sum_probs=143.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHcCCHHH
Q 013800 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP------GDGESWMQYAKLVWELHRDQHR 285 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~d~~~ 285 (436)
++|++|.++|.++ |.+|...+++++|++.|.+++++.. .....+.++|.+|...+. +++
T Consensus 31 ~~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~-~~~ 95 (290)
T d1qqea_ 31 YKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN-SVN 95 (290)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHH
T ss_pred ccHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC-cHH
Confidence 4577777776654 8899999999999999999999732 235688999999998875 999
Q ss_pred HHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHH-HcCCHHHHHHHHHHHHHhCCC---
Q 013800 286 ALTYFERAALAAPQD------SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ-SKGDLEGAEEYFSRAILANPG--- 355 (436)
Q Consensus 286 A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~--- 355 (436)
|+.+|++++++.+.. ..++..+| .++. ..|++++|+.+|++++++.+.
T Consensus 96 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~----------------------~~~~~~~~~~~~A~~~~~~A~~l~~~~~~ 153 (290)
T d1qqea_ 96 AVDSLENAIQIFTHRGQFRRGANFKFELG----------------------EILENDLHDYAKAIDCYELAGEWYAQDQS 153 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------HHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhHHhhhcccchhHHHHHHHHH----------------------HhHhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999986554 34445555 5554 469999999999999987432
Q ss_pred ---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 356 ---DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-------HVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 356 ---~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
...++.++|.++..+|+ |++|+..|++++...+... ..+...+.++...|++..|...+.++..++|.|
T Consensus 154 ~~~~~~~~~~la~~~~~~g~-y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~ 232 (290)
T d1qqea_ 154 VALSNKCFIKCADLKALDGQ-YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred hhhhhhHHHHHHHHHHHcCh-HHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 24678999999999999 9999999999999887754 456788889999999999999999999999887
Q ss_pred hhH
Q 013800 426 QGA 428 (436)
Q Consensus 426 ~~a 428 (436)
...
T Consensus 233 ~~s 235 (290)
T d1qqea_ 233 ADS 235 (290)
T ss_dssp ---
T ss_pred cch
Confidence 764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.57 E-value=5e-15 Score=129.37 Aligned_cols=107 Identities=16% Similarity=0.037 Sum_probs=90.8
Q ss_pred hhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
+..+...|+.++..|+|++|+..|+++++++|.++.+|.++|.+|...|++++|+..|+++++++|+++.+|+.+|.++.
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~ 83 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 35567888888999999999999999999999888889999999999999999999999999889998888999998888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013800 278 ELHRDQHRALTYFERAALAAPQDSNILA 305 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~ 305 (436)
.+++ +++|+.+|++++.++|++...+.
T Consensus 84 ~l~~-~~~A~~~~~~al~l~p~~~~~~~ 110 (201)
T d2c2la1 84 EMES-YDEAIANLQRAYSLAKEQRLNFG 110 (201)
T ss_dssp HTTC-HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HCCC-HHHHHHHHHHHHHhCcccHHHHH
Confidence 8875 89999999998888876544433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.54 E-value=7.3e-15 Score=128.30 Aligned_cols=119 Identities=13% Similarity=0.006 Sum_probs=104.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACF 310 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 310 (436)
.+..+...|..++..|+|++|+.+|+++++++|.++.+|.++|.+|...++ +++|+.+|+++++++|+++.+|+++|
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~-~~~Ai~~~~~al~l~p~~~~a~~~lg-- 79 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-PEQALADCRRALELDGQSVKAHFFLG-- 79 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTSCTTCHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhh-hhhhhHHHHHHHHhCCCcHHHHHHHH--
Confidence 567788999999999999999999999999999999999999999999875 99999999999999999999999999
Q ss_pred HHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 013800 311 LWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH 372 (436)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 372 (436)
.++..+|++++|+..|+++++++|++...+...+..+...+.
T Consensus 80 --------------------~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~ 121 (201)
T d2c2la1 80 --------------------QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 121 (201)
T ss_dssp --------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHH
T ss_pred --------------------HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 899999999999999999999988765555544544444433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=3.4e-13 Score=115.13 Aligned_cols=135 Identities=11% Similarity=0.044 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW 312 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 312 (436)
..+...|..++..|+|++|+..|++++...|........... ....+ ...++.++|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~-----------~~~~~---------~~~~~~nla---- 69 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQ-----------KAQAL---------RLASHLNLA---- 69 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHH-----------HHHHH---------HHHHHHHHH----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHh-----------hhchh---------HHHHHHHHH----
Confidence 445667777777777777777777777766543221110000 00000 012345556
Q ss_pred HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
.+|.++|++++|+.+++++|+++|+++.+++.+|.++..+|+ +++|+..|+++++++|+++
T Consensus 70 ------------------~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al~l~P~n~ 130 (170)
T d1p5qa1 70 ------------------MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND-FELARADFQKVLQLYPNNK 130 (170)
T ss_dssp ------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSSCH
T ss_pred ------------------HHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhh-HHHHHHHHHHHHHhCCCCH
Confidence 666666777777777777777777777777777777777777 7777777777777777777
Q ss_pred HHHHHHHHHHHHCCChHH
Q 013800 393 HVLAAYACFLWETEEDED 410 (436)
Q Consensus 393 ~~~~~la~~~~~~g~~~~ 410 (436)
.+...++.+....++..+
T Consensus 131 ~~~~~l~~~~~~~~~~~~ 148 (170)
T d1p5qa1 131 AAKTQLAVCQQRIRRQLA 148 (170)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666555544443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=5e-13 Score=114.03 Aligned_cols=122 Identities=11% Similarity=0.035 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH
Q 013800 266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY 345 (436)
Q Consensus 266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~ 345 (436)
...+...|..++..++ |++|+.+|++++...|.......... .....
T Consensus 13 a~~l~~~G~~~~~~~~-~~~Ai~~y~~al~~~~~~~~~~~~~~--------------------------------~~~~~ 59 (170)
T d1p5qa1 13 STIVKERGTVYFKEGK-YKQALLQYKKIVSWLEYESSFSNEEA--------------------------------QKAQA 59 (170)
T ss_dssp HHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTCCCCCSHHH--------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhhhccccchHHH--------------------------------hhhch
Confidence 3456778999999875 99999999999999876432111111 00001
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
+ ...++.++|.++..+|+ +++|+.++++++.++|.++.+++.+|.++..+|++++|+..|+++++++|+.
T Consensus 60 ~---------~~~~~~nla~~y~k~~~-~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n 129 (170)
T d1p5qa1 60 L---------RLASHLNLAMCHLKLQA-FSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 129 (170)
T ss_dssp H---------HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred h---------HHHHHHHHHHHHHhhhh-cccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 1 02367889999999999 9999999999999999999999999999999999999999999999999998
Q ss_pred hhHHh
Q 013800 426 QGAVT 430 (436)
Q Consensus 426 ~~a~~ 430 (436)
..+..
T Consensus 130 ~~~~~ 134 (170)
T d1p5qa1 130 KAAKT 134 (170)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.50 E-value=1.2e-12 Score=122.40 Aligned_cols=189 Identities=11% Similarity=0.080 Sum_probs=168.8
Q ss_pred ChHHHHHhhcCCCCCCChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013800 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-LLLRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-~~~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
.+...+.+|+..........|...+.+....|++++|...|+++++..|.+. .+|..++.+....|+++.|+..|++++
T Consensus 82 ~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al 161 (308)
T d2onda1 82 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 161 (308)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4567788988754436777899999999999999999999999999999775 579999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCH
Q 013800 260 MADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDL 339 (436)
Q Consensus 260 ~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~ 339 (436)
+..|.....|...|...+...++.+.|..+|++++...|+++..|..++ ..+...|++
T Consensus 162 ~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~----------------------~~~~~~g~~ 219 (308)
T d2onda1 162 EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYI----------------------DYLSHLNED 219 (308)
T ss_dssp TSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHH----------------------HHHHTTCCH
T ss_pred HhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHH----------------------HHHHHcCCh
Confidence 9999999999999988777666799999999999999999999999999 777889999
Q ss_pred HHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 340 EGAEEYFSRAILANPGD----GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 340 ~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
++|..+|++++...|.+ ..+|..+.......|+ .+.+..+++++.+..|+..
T Consensus 220 ~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~-~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 220 NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD-LASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcccc
Confidence 99999999999987754 4578888888888899 9999999999999998764
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=1.4e-12 Score=121.96 Aligned_cols=236 Identities=12% Similarity=-0.043 Sum_probs=185.4
Q ss_pred CCCChHHHHHhhcCCCCCC-----ChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHH
Q 013800 178 RPVSPPMYLAMGLGISVPG-----FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPC--------HPLLLRNYAQLLQK 244 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--------~~~~~~~la~~~~~ 244 (436)
+++++..++..++.+.+.. ....+..++.++...|++..|+..+.+++...+. ....+..+|.++..
T Consensus 66 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 145 (366)
T d1hz4a_ 66 ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 145 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHH
Confidence 4556666666666544321 1256778889999999999999999999875421 23567789999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHH
Q 013800 245 KGDLYRAEDYYNHATMADPGD-----GESWMQYAKLVWELHRDQHRALTYFERAALAAPQ-------DSNILAAYACFLW 312 (436)
Q Consensus 245 ~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~ 312 (436)
.|+++.|...+.+++...+.. ...+...+.++...+. +.++...+.++...... ...++..++.++.
T Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (366)
T d1hz4a_ 146 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD-LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 224 (366)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred hcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 999999999999999986643 5667778888888875 99999999999887543 2456678899999
Q ss_pred HccCchHHHHHHHHHHHH----------------hHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHh
Q 013800 313 EMEDDGEDDKAQEEHIQV----------------LPIQSKGDLEGAEEYFSRAILA------NPGDGEIMSQYAKLVWEL 370 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~----------------~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~ 370 (436)
..|+.++|...+.+.+.. .++...|++++|+..+++++.. .|....++..+|.++..+
T Consensus 225 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 304 (366)
T d1hz4a_ 225 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 304 (366)
T ss_dssp HTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHC
Confidence 999999999988754322 6889999999999999999865 345577899999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHCCChHHHHHHH
Q 013800 371 HHDHDKALCYFERAVQASPA---------DSHVLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 371 g~d~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~ 415 (436)
|+ +++|++.+++++++.+. ....+..+...+...++.+++....
T Consensus 305 g~-~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~~ 357 (366)
T d1hz4a_ 305 GR-KSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHR 357 (366)
T ss_dssp TC-HHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 99 99999999999987542 2344556666677888888876653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.50 E-value=9.9e-14 Score=118.31 Aligned_cols=135 Identities=18% Similarity=0.138 Sum_probs=106.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 314 (436)
+...|..++..|+|++|+..|.+++...+ ...+.....+...++|....++.++|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~nla------ 84 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVE-------------------GSRAAAEDADGAKLQPVALSCVLNIG------ 84 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------HHHHHSCHHHHGGGHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhh-------------------hhhhhhhhHHHHHhChhhHHHHHHHH------
Confidence 45678888889999999999888876421 11222222334455666777788888
Q ss_pred cCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 013800 315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHV 394 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~ 394 (436)
.++.++|++++|+..|.++|+++|+++.+|+++|.++..+|+ +++|+..|+++++++|++..+
T Consensus 85 ----------------~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~-~~~A~~~~~~al~l~p~n~~~ 147 (169)
T d1ihga1 85 ----------------ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE-YDQALADLKKAQEIAPEDKAI 147 (169)
T ss_dssp ----------------HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHH
T ss_pred ----------------HHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHH
Confidence 888889999999999999999999999999999999999999 999999999999999999988
Q ss_pred HHHHHHHHHHCCChHHH
Q 013800 395 LAAYACFLWETEEDEDD 411 (436)
Q Consensus 395 ~~~la~~~~~~g~~~~A 411 (436)
...++.+........++
T Consensus 148 ~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 148 QAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888887666555443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.1e-13 Score=110.71 Aligned_cols=114 Identities=12% Similarity=0.119 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWE 313 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 313 (436)
.+..+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..++. |++|+..|+++++++|.+...+..++.++..
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD-YNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCc-hHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 445667777777777777777777777777777777777777666653 7777777777777777666666666666666
Q ss_pred ccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 314 MEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYA 364 (436)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 364 (436)
+| .++...+++++|+.+|++++..++. ++....+.
T Consensus 85 lg---------------~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~ 119 (128)
T d1elra_ 85 IG---------------NSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQ 119 (128)
T ss_dssp HH---------------HHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHH
T ss_pred HH---------------HHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHH
Confidence 55 8888999999999999999998875 55554443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.49 E-value=1.9e-13 Score=108.30 Aligned_cols=94 Identities=20% Similarity=0.068 Sum_probs=87.2
Q ss_pred hhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013800 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 279 (436)
.++.+|..+.+.|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|.++.+|..+|.++...
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence 45778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHH
Q 013800 280 HRDQHRALTYFERAA 294 (436)
Q Consensus 280 ~~d~~~A~~~~~~al 294 (436)
|. +++|++++++.|
T Consensus 98 g~-~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HN-ANAALASLRAWL 111 (112)
T ss_dssp HH-HHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHh
Confidence 85 999999999875
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.47 E-value=8.9e-13 Score=112.20 Aligned_cols=144 Identities=11% Similarity=0.086 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
+..+...|..++..|+|.+|+..|.+++...+........ .......+ ...++.++|
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~-----------~~~~~~~~---------~~~~~~Nla--- 71 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK-----------ESKASESF---------LLAAFLNLA--- 71 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH-----------HHHHHHHH---------HHHHHHHHH---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchh-----------hhhhcchh---------HHHHHHhHH---
Confidence 3456677788888888888888888777654432110000 00000000 123455666
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013800 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~ 391 (436)
.+|..+|++++|+.++++++.++|.+..+++++|.++..+|+ +++|+..|+++++++|++
T Consensus 72 -------------------~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~-~~~A~~~~~~al~l~P~n 131 (168)
T d1kt1a1 72 -------------------MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE-FESAKGDFEKVLEVNPQN 131 (168)
T ss_dssp -------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHSCTTC
T ss_pred -------------------HHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Confidence 667777777777777777777777777777777777777777 777777777777777777
Q ss_pred HHHHHHHHHHHHHCCChHH-HHHHHHHH
Q 013800 392 SHVLAAYACFLWETEEDED-DSKSSDQF 418 (436)
Q Consensus 392 ~~~~~~la~~~~~~g~~~~-A~~~~~~a 418 (436)
..++..++.+....+.+.+ ..+.|.+.
T Consensus 132 ~~~~~~l~~~~~~~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 132 KAARLQIFMCQKKAKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 7777777777665554433 33333333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.47 E-value=2.5e-13 Score=107.58 Aligned_cols=88 Identities=18% Similarity=0.100 Sum_probs=86.2
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 410 (436)
.++.+.|++++|+..|+++++.+|+++.+|..+|.++...|+ +++|+.+|+++++++|++..++..+|.++..+|++++
T Consensus 24 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 24 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK-DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhh-HHHhhcccccccccccccccchHHHHHHHHHCCCHHH
Confidence 888999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 013800 411 DSKSSDQFQ 419 (436)
Q Consensus 411 A~~~~~~al 419 (436)
|++.+++++
T Consensus 103 A~~~l~~~l 111 (112)
T d1hxia_ 103 ALASLRAWL 111 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999976
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.47 E-value=1.3e-13 Score=114.53 Aligned_cols=130 Identities=12% Similarity=0.088 Sum_probs=87.7
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
.+.+.+.|++|+..|+++++++|+++.+++++|.++...+++..+.+. .+ .+++|
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~------------------------~~-~~~~A 60 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDA------------------------KQ-MIQEA 60 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHH------------------------HH-HHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHH------------------------HH-HHHHH
Confidence 445566677777777777777777777777777777665555444331 12 26788
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 287 LTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL 366 (436)
Q Consensus 287 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (436)
+..|+++++++|+++.+++++|.++...|.... ......+.+++|+++|+++++++|++..++..|+.+
T Consensus 61 i~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~-----------~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~ 129 (145)
T d1zu2a1 61 ITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTP-----------DETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 129 (145)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhhHHHhhHHHHHHHcccchh-----------hHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH
Confidence 888888888888888888888866655442211 122233457888888888888888888888877776
Q ss_pred HHHhcC
Q 013800 367 VWELHH 372 (436)
Q Consensus 367 ~~~~g~ 372 (436)
....+.
T Consensus 130 ~ka~~~ 135 (145)
T d1zu2a1 130 AKAPQL 135 (145)
T ss_dssp HTHHHH
T ss_pred HHHHHH
Confidence 544443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.47 E-value=1.3e-13 Score=114.52 Aligned_cols=110 Identities=19% Similarity=0.215 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ 362 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (436)
|++|+..|+++++++|+++.+++++|.++...+++..+ ....+.+++|+..|+++++++|+++.+|++
T Consensus 13 fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~------------~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~ 80 (145)
T d1zu2a1 13 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSI------------SDAKQMIQEAITKFEEALLIDPKKDEAVWC 80 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCH------------HHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhh------------hHHHHHHHHHHHHHHHHHHhcchhhHHHhh
Confidence 77777777777777777777777777666554443322 224467789999999999999999999999
Q ss_pred HHHHHHHhcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 363 YAKLVWELHH----------DHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 363 la~~~~~~g~----------d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
+|.++..+|+ .+.+|+++|+++++++|++..++..++.+...
T Consensus 81 lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka 132 (145)
T d1zu2a1 81 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA 132 (145)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred HHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHH
Confidence 9999987653 26899999999999999999999999887533
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.46 E-value=6.1e-13 Score=111.42 Aligned_cols=113 Identities=16% Similarity=0.026 Sum_probs=101.2
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH----------------PLLLRNYAQLLQKKGDLYRAEDYYNHATMAD 262 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 262 (436)
..+...|+.++..|+|.+|+..|++++...+.. ..++.++|.+|..+|++++|+.+++++++++
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~ 97 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 97 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc
Confidence 345667889999999999999999999866532 2467889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 263 PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW 312 (436)
Q Consensus 263 p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 312 (436)
|.+..+|+.+|.++..+++ +++|+.+|+++++++|++..+...+..+..
T Consensus 98 p~~~ka~~~~g~~~~~lg~-~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 98 KNNVKALYKLGVANMYFGF-LEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred chhhhhhHHhHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999985 999999999999999999999998885543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.44 E-value=1.7e-12 Score=108.62 Aligned_cols=132 Identities=11% Similarity=0.011 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW 312 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 312 (436)
..+...|..++..|+|.+|+..|.+++...+...... +.........+. ..++.++|
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~--------------~~~~~~~~~~~~-----~~~~~Nla---- 74 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD--------------DQILLDKKKNIE-----ISCNLNLA---- 74 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC--------------CHHHHHHHHHHH-----HHHHHHHH----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh--------------hHHHHHhhhhHH-----HHHHhhHH----
Confidence 4566788999999999999999999998765432110 011111111111 23567788
Q ss_pred HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
.+|.++|++++|+..++++|+++|.+..+|+.+|.++..+|+ +++|+..|+++++++|++.
T Consensus 75 ------------------~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~-~~~A~~~~~~al~l~P~n~ 135 (153)
T d2fbna1 75 ------------------TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF-LEEAKENLYKAASLNPNNL 135 (153)
T ss_dssp ------------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSTTCH
T ss_pred ------------------HHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCC-HHHHHHHHHHHHHhCCCCH
Confidence 888889999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHCC
Q 013800 393 HVLAAYACFLWETE 406 (436)
Q Consensus 393 ~~~~~la~~~~~~g 406 (436)
.+...+..+..+++
T Consensus 136 ~~~~~l~~~~~kl~ 149 (153)
T d2fbna1 136 DIRNSYELCVNKLK 149 (153)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 98888888776553
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.44 E-value=4.5e-13 Score=114.10 Aligned_cols=135 Identities=13% Similarity=0.055 Sum_probs=98.4
Q ss_pred hhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013800 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH 280 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 280 (436)
....|+.+...|+|.+|+..|+++++..+.. .+.....+...++|....++.++|.++..++
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~ 91 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS------------------RAAAEDADGAKLQPVALSCVLNIGACKLKMS 91 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------HHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh------------------hhhhhhHHHHHhChhhHHHHHHHHHHHHhhc
Confidence 4567888899999999999999998753311 1111122333445666677777888877776
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIM 360 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (436)
+ |++|+..|+++++++|+++.+|+.+| .++..+|++++|+..|+++++++|++..++
T Consensus 92 ~-~~~Ai~~~~~al~~~p~~~~a~~~~g----------------------~~~~~l~~~~~A~~~~~~al~l~p~n~~~~ 148 (169)
T d1ihga1 92 D-WQGAVDSCLEALEIDPSNTKALYRRA----------------------QGWQGLKEYDQALADLKKAQEIAPEDKAIQ 148 (169)
T ss_dssp C-HHHHHHHHHHHHTTCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred c-cchhhhhhhhhhhhhhhhhhHHHhHH----------------------HHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4 88888888888888888888888888 777778888888888888888888888888
Q ss_pred HHHHHHHHHhcCCHHHH
Q 013800 361 SQYAKLVWELHHDHDKA 377 (436)
Q Consensus 361 ~~la~~~~~~g~d~~~A 377 (436)
..++.+...... ..++
T Consensus 149 ~~l~~~~~~l~~-~~~~ 164 (169)
T d1ihga1 149 AELLKVKQKIKA-QKDK 164 (169)
T ss_dssp HHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHH-HHHH
Confidence 877777766555 4443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=3e-13 Score=108.72 Aligned_cols=61 Identities=13% Similarity=0.134 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013800 340 EGAEEYFSRAILANPGD--GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 340 ~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
++|+..|++++..+|.+ ..+|+++|.++..+|+ +++|+.+|+++++++|++..+...+..+
T Consensus 53 ~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~-~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 53 RKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE-YEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 34444444444444332 2244444444444444 4444444444444444444444444433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=3.1e-13 Score=108.60 Aligned_cols=114 Identities=12% Similarity=0.124 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 013800 236 RNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH--RDQHRALTYFERAALAAPQD--SNILAAYACFL 311 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~d~~~A~~~~~~al~~~p~~--~~~~~~la~~~ 311 (436)
-.++..+...+++++|++.|++++.++|.++.+++++|.++...+ +++++|+.+|++++..+|.+ ..+++++|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg--- 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA--- 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH---
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH---
Confidence 356778888889999999999999999999999999998886532 24678999999999888765 45788899
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 013800 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH 371 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 371 (436)
.+|...|++++|+.+|+++++++|++..+...++.+..+.+
T Consensus 80 -------------------~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~ 120 (122)
T d1nzna_ 80 -------------------VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120 (122)
T ss_dssp -------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999988888887766543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.42 E-value=1.9e-10 Score=104.44 Aligned_cols=215 Identities=12% Similarity=0.081 Sum_probs=168.3
Q ss_pred ChhhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYRAEDYYNHATMADPGDGESWMQY 272 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l 272 (436)
++.+++++|..+...+++++|+++|+++.+. .+..+++.||.+|.. ..++..|..+++++.... ++.++..+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcc
Confidence 3568999999999999999999999999876 588999999999997 779999999999987654 77888888
Q ss_pred HHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----chHHHHHHHHHHHH----------hHHHH
Q 013800 273 AKLVWEL---HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMED----DGEDDKAQEEHIQV----------LPIQS 335 (436)
Q Consensus 273 a~~~~~~---~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----~~~A~~~~~~~~~~----------~~~~~ 335 (436)
|.++... ..+.+.|...++++....+ ..+...++..+..... ...+...+...... .++..
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence 8776542 2358999999999987654 5555666666655332 33444444433322 33332
Q ss_pred ----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---
Q 013800 336 ----KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE----LHHDHDKALCYFERAVQASPADSHVLAAYACFLWE--- 404 (436)
Q Consensus 336 ----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--- 404 (436)
..+...+..+++.+.+ +.++.+++++|.++.. ..+ +++|+.+|+++.+. .++.++++||.++..
T Consensus 155 ~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d-~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g 229 (265)
T d1ouva_ 155 GRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKN-FKEALARYSKACEL--ENGGGCFNLGAMQYNGEG 229 (265)
T ss_dssp TSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCC-HHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSS
T ss_pred CCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccc-hhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCC
Confidence 4677888888888876 5679999999999887 445 99999999999887 468999999999986
Q ss_pred -CCChHHHHHHHHHHHhhC
Q 013800 405 -TEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 405 -~g~~~~A~~~~~~al~l~ 422 (436)
..++++|+++|+++....
T Consensus 230 ~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 230 VTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp SSCCSTTHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHHHCc
Confidence 448999999999998874
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.42 E-value=3.2e-12 Score=108.65 Aligned_cols=122 Identities=13% Similarity=0.044 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH
Q 013800 266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY 345 (436)
Q Consensus 266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~ 345 (436)
...+...|..++..+. |.+|+..|++++...+....... ........
T Consensus 15 a~~~~e~G~~~~~~~~-~~~A~~~Y~~al~~~~~~~~~~~--------------------------------~~~~~~~~ 61 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGK-YVQAVIQYGKIVSWLEMEYGLSE--------------------------------KESKASES 61 (168)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCCSCCH--------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhccch--------------------------------hhhhhcch
Confidence 3456778989899875 99999999999886543211000 00001111
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013800 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 425 (436)
+ ...++.++|.|+..+|+ +++|+.++++++.++|.+..+++.+|.++..+|++++|+..|.+++.++|+.
T Consensus 62 ~---------~~~~~~Nla~~~~~l~~-~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n 131 (168)
T d1kt1a1 62 F---------LLAAFLNLAMCYLKLRE-YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 131 (168)
T ss_dssp H---------HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred h---------HHHHHHhHHHHHHHhhh-cccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 1 14578899999999999 9999999999999999999999999999999999999999999999999998
Q ss_pred hhHHh
Q 013800 426 QGAVT 430 (436)
Q Consensus 426 ~~a~~ 430 (436)
..+..
T Consensus 132 ~~~~~ 136 (168)
T d1kt1a1 132 KAARL 136 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=2.5e-12 Score=104.12 Aligned_cols=108 Identities=12% Similarity=0.166 Sum_probs=93.9
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE-------SWMQ 271 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~ 271 (436)
..+..+|+.++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++++|.+.. ++..
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 457789999999999999999999999999999999999999999999999999999999999887754 5666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 272 YAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 272 la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
+|.++...+ ++++|+.+|++++..+++ +.....+.
T Consensus 85 lg~~~~~~~-~~~~A~~~~~kal~~~~~-~~~~~~l~ 119 (128)
T d1elra_ 85 IGNSYFKEE-KYKDAIHFYNKSLAEHRT-PDVLKKCQ 119 (128)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHCCC-HHHHHHHH
T ss_pred HHHHHHHhC-CHHHHHHHHHHHHhcCCC-HHHHHHHH
Confidence 777777776 499999999999999875 44444433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=3.9e-12 Score=127.14 Aligned_cols=137 Identities=14% Similarity=0.028 Sum_probs=53.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHH
Q 013800 241 LLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGED 320 (436)
Q Consensus 241 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 320 (436)
+....+.|+.|+..+.+++.++|.+...+..+|.++...++ +++|+..+++++..+|. .++..+|
T Consensus 95 l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~~~--~~~~~LG------------ 159 (497)
T d1ya0a1 95 LEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTH-TSAIVKPQSSSCSYICQ--HCLVHLG------------ 159 (497)
T ss_dssp HHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHHH--HHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCC-HHHHHHHHHHHhCCCHH--HHHHHHH------------
Confidence 33344445555555555555555555555555555444442 55555555555544432 3344444
Q ss_pred HHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013800 321 DKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 321 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~ 400 (436)
.++...|++++|+.+|++|++++|+++.++++||.++...|+ +.+|+.+|.+++..+|..+.++.+|+.
T Consensus 160 ----------~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~-~~~A~~~y~ral~~~~~~~~a~~nL~~ 228 (497)
T d1ya0a1 160 ----------DIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD-HLTTIFYYCRSIAVKFPFPAASTNLQK 228 (497)
T ss_dssp ----------HHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC-HHHHHHHHHHHHSSSBCCHHHHHHHHH
T ss_pred ----------HHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 444445555555555555555555555555555555555555 555555555555555555555555554
Q ss_pred HHH
Q 013800 401 FLW 403 (436)
Q Consensus 401 ~~~ 403 (436)
++.
T Consensus 229 ~~~ 231 (497)
T d1ya0a1 229 ALS 231 (497)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=2.5e-10 Score=86.88 Aligned_cols=77 Identities=12% Similarity=0.052 Sum_probs=53.8
Q ss_pred hhhhhHhhhhhhCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013800 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH-------PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ 271 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (436)
+.+..+|.++++.|+|.+|+.+|++++++.|.+ +.++.++|.++.+.|++++|+.+|+++++++|+++.++.+
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 445677777777777777777777777764432 4667777777777777777777777777777777777777
Q ss_pred HHHH
Q 013800 272 YAKL 275 (436)
Q Consensus 272 la~~ 275 (436)
++.+
T Consensus 86 l~~~ 89 (95)
T d1tjca_ 86 LKYF 89 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6644
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=3.5e-10 Score=86.06 Aligned_cols=73 Identities=14% Similarity=0.165 Sum_probs=66.8
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGD-------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLW 403 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 403 (436)
.++.+.|+|++|+.+|++|+++.|.+ ..++.++|.++.++|+ +++|+..|+++++++|+++.++.+++.+..
T Consensus 13 ~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~-~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~ 91 (95)
T d1tjca_ 13 KVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD-LDKALLLTKKLLELDPEHQRANGNLKYFEY 91 (95)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCC-hHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 88999999999999999999986543 6899999999999999 999999999999999999999999987654
Q ss_pred H
Q 013800 404 E 404 (436)
Q Consensus 404 ~ 404 (436)
.
T Consensus 92 ~ 92 (95)
T d1tjca_ 92 I 92 (95)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.06 E-value=1e-07 Score=85.79 Aligned_cols=184 Identities=16% Similarity=0.175 Sum_probs=144.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE---LHRDQHRALTYFERAALAAPQDSNILAAY 307 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~~~d~~~A~~~~~~al~~~p~~~~~~~~l 307 (436)
+|.+++.+|..+...+++++|+++|+++.+. ++..+++.||.+|.. ..+++..|..+++++.... ++.+...+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcc
Confidence 5789999999999999999999999999775 688999999999887 2347999999999987654 77888888
Q ss_pred HHHHHHc----cCchHHHHHHHHHHHH----------hHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013800 308 ACFLWEM----EDDGEDDKAQEEHIQV----------LPIQ----SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE 369 (436)
Q Consensus 308 a~~~~~~----g~~~~A~~~~~~~~~~----------~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 369 (436)
+.++... .+.+.|...++..... ..+. .......|...+.+... +.+...+..||.++..
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhhcc
Confidence 8877653 4556677777655543 1222 24556777777777655 5668899999999987
Q ss_pred hc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhC
Q 013800 370 LH---HDHDKALCYFERAVQASPADSHVLAAYACFLWE----TEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 370 ~g---~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~ 422 (436)
.. .+...+..+++.+.+ +.++.+++++|.++.. ..++++|+.+|+++.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g 212 (265)
T d1ouva_ 155 GRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 212 (265)
T ss_dssp TSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhccc
Confidence 22 237788888888775 5578999999999987 678999999999998873
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.04 E-value=2.9e-10 Score=94.95 Aligned_cols=96 Identities=15% Similarity=0.045 Sum_probs=83.6
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--------
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGD------------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPA-------- 390 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~-------- 390 (436)
..++..|+|++|+..|++++++.|+. ..+|.++|.++..+|+ +++|+..+++++.+.|.
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~-~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS-FDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCc-cchhhHhhhhhhhcccccccccccc
Confidence 67788999999999999999998764 3678999999999999 99999999999987542
Q ss_pred ---CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013800 391 ---DSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 391 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 427 (436)
...+++++|.+|..+|++++|+..|++++++.|...+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~ 135 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 135 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence 2357899999999999999999999999999765444
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.03 E-value=2.3e-10 Score=104.19 Aligned_cols=131 Identities=15% Similarity=0.021 Sum_probs=107.1
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013800 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
-.+..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++...+. ..++
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~-~~~a 83 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA-RKDF 83 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccc-cHHH
Confidence 346679999999999999999999999999999999999999999999999999999999999999988776654 5555
Q ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013800 287 LTYFERAALA-APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIM 360 (436)
Q Consensus 287 ~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (436)
...+.+.... .|.....+...+ .++...|++++|+..+.++.+..|..+..+
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a----------------------~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSF----------------------NLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHH----------------------HHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHhhhhhcccCchHHHHHHHHH----------------------HHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 4443332222 344445555556 777889999999999999999999865544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.02 E-value=5e-10 Score=93.42 Aligned_cols=94 Identities=16% Similarity=0.015 Sum_probs=66.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------
Q 013800 239 AQLLQKKGDLYRAEDYYNHATMADPGD------------GESWMQYAKLVWELHRDQHRALTYFERAALAAPQ------- 299 (436)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~------- 299 (436)
|..++..|+|++|+..|++++++.|.. ..+|.++|.+|..+++ +++|+..+++++.+.|.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~-~~~A~~~~~~al~~~~~~~~~~~~ 94 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS-FDEALHSADKALHYFNRRGELNQD 94 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCc-cchhhHhhhhhhhccccccccccc
Confidence 556666666666666666666665543 3456677777777764 77777777777766432
Q ss_pred ----CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 300 ----DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 300 ----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
...+++++| .+|..+|++++|+..|++++++.|+
T Consensus 95 ~~~~~~~a~~~~g----------------------~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 95 EGKLWISAVYSRA----------------------LALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHhhhH----------------------HHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 123566777 8899999999999999999998654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.98 E-value=3.5e-10 Score=102.86 Aligned_cols=127 Identities=11% Similarity=-0.020 Sum_probs=66.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013800 242 LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
.+..|++++|+..|+++++.+|.++.++..++.++...|+ +++|+..|+++++++|++..++..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~-~e~A~~~l~~a~~l~P~~~~~~~~l~------------- 71 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGD-FERADEQLMQSIKLFPEYLPGASQLR------------- 71 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCGGGHHHHHHHH-------------
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCcHHHHHHHH-------------
Confidence 3445666666666666666666666666666666665553 66666666666666666666555555
Q ss_pred HHHHHHHHHhHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013800 322 KAQEEHIQVLPIQSKGDLEGAEEYFSRAI-LANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 322 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~ 392 (436)
.++...+..+++...+.+.. ...|.....+...+.++...|+ +++|+..++++.+..|..+
T Consensus 72 ---------~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd-~~~A~~~~~~a~e~~p~~~ 133 (264)
T d1zbpa1 72 ---------HLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQD-YEQVSELALQIEELRQEKG 133 (264)
T ss_dssp ---------HHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCCCCC
T ss_pred ---------HHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCCC
Confidence 33332333333322222211 1123334444455555555555 6666666666666555543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.84 E-value=8.9e-09 Score=87.74 Aligned_cols=117 Identities=11% Similarity=-0.025 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW 312 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 312 (436)
..+...|..+...|++++|+..|.+|+.+.+++.......+. -.......+.+....++..++
T Consensus 12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~-------------w~~~~r~~l~~~~~~a~~~la---- 74 (179)
T d2ff4a2 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQ-------------FVEPFATALVEDKVLAHTAKA---- 74 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTST-------------THHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchH-------------HHHHHHHHHHHHHHHHHHHHH----
Confidence 556778888888888888888888888887765432211110 011122223333455667777
Q ss_pred HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013800 313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAV 385 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al 385 (436)
.++...|++++|+.+++++++++|.+..+|..++.++...|+ +.+|+..|+++.
T Consensus 75 ------------------~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr-~~eAl~~y~~~~ 128 (179)
T d2ff4a2 75 ------------------EAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDR-QSDALGAYRRVK 128 (179)
T ss_dssp ------------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHH
T ss_pred ------------------HHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC-HHHHHHHHHHHH
Confidence 888889999999999999999999999999999999999999 999999998873
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.75 E-value=6e-08 Score=82.45 Aligned_cols=89 Identities=11% Similarity=0.080 Sum_probs=79.9
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013800 331 LPIQSKGDLEGAEEYFSRAILANPGD----------------------GEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~ 388 (436)
......|++++|+..|.+|+.+.+.+ ..++..++.++...|+ +++|+.++++++.++
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~-~~~Al~~~~~al~~~ 97 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGR-ASAVIAELEALTFEH 97 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHS
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHhC
Confidence 66778889999999999988886533 2578999999999999 999999999999999
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013800 389 PADSHVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 389 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (436)
|.+..+|..++.++...|++.+|+..|+++..
T Consensus 98 P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 98 PYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999843
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.21 E-value=1.4e-05 Score=63.67 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013800 282 DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 361 (436)
|+++|+.+|+++.+.. ++.+.+.++ . ....+.++|+.+|+++.+. .++.+.+
T Consensus 8 d~~~A~~~~~kaa~~g--~~~a~~~l~----------------------~--~~~~~~~~a~~~~~~aa~~--g~~~a~~ 59 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN--EMFGCLSLV----------------------S--NSQINKQKLFQYLSKACEL--NSGNGCR 59 (133)
T ss_dssp HHHHHHHHHHHHHHTT--CTTHHHHHH----------------------T--CTTSCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred CHHHHHHHHHHHHHCC--Chhhhhhhc----------------------c--ccccCHHHHHHHHhhhhcc--cchhhhh
Confidence 5889999999998774 455566665 2 2357889999999999875 6789999
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhh
Q 013800 362 QYAKLVWEL---HHDHDKALCYFERAVQASPADSHVLAAYACFLWE----TEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 362 ~la~~~~~~---g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l 421 (436)
.||.+|..- ..|+.+|+++|+++.+. .++.+...||.+|.. ..+..+|+.+|+++.++
T Consensus 60 ~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 60 FLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp HHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred hHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 999998751 23489999999999875 568899999999887 56899999999999876
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.17 E-value=2e-05 Score=62.71 Aligned_cols=85 Identities=19% Similarity=0.226 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013800 282 DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 361 (436)
++++|+.+|+++.+. +++.+.+.+|.++..-. ....++++|+.+|+++.+. .++.+.+
T Consensus 38 ~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~------------------~~~~d~~~A~~~~~~aa~~--g~~~a~~ 95 (133)
T d1klxa_ 38 NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGK------------------YVKKDLRKAAQYYSKACGL--NDQDGCL 95 (133)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCS------------------SSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred CHHHHHHHHhhhhcc--cchhhhhhHHHhhhhcc------------------ccchhhHHHHHHHhhhhcc--CcchHHH
Confidence 456666666665543 45566666662221100 0134666777777776653 4566677
Q ss_pred HHHHHHHH---hcCCHHHHHHHHHHHHHhC
Q 013800 362 QYAKLVWE---LHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 362 ~la~~~~~---~g~d~~~A~~~~~~al~~~ 388 (436)
.||.+|.. ..+|+.+|+.+|++|.+..
T Consensus 96 ~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 96 ILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 77776665 1223677777777766654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.15 E-value=1.5e-05 Score=61.95 Aligned_cols=83 Identities=12% Similarity=0.001 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCHHHHH
Q 013800 300 DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG-EIMSQYAKLVWELHHDHDKAL 378 (436)
Q Consensus 300 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~d~~~A~ 378 (436)
...+.+++|.++.... ...+.++|+.+++.+++.+|.+. +.+++||..++++|+ |++|+
T Consensus 34 s~qt~F~YAw~Lv~S~-------------------~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgd-y~~A~ 93 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKST-------------------DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE-YSMAK 93 (124)
T ss_dssp CHHHHHHHHHHHHHSS-------------------CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC-HHHHH
T ss_pred CcchHHHHHHHHHcCC-------------------cHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhh-HHHHH
Confidence 3678888884443322 22456789999999999998764 899999999999999 99999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH
Q 013800 379 CYFERAVQASPADSHVLAAYACFL 402 (436)
Q Consensus 379 ~~~~~al~~~p~~~~~~~~la~~~ 402 (436)
.+++++|+++|++..+....-.+.
T Consensus 94 ~~~~~~L~ieP~n~qA~~L~~~Ie 117 (124)
T d2pqrb1 94 RYVDTLFEHERNNKQVGALKSMVE 117 (124)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHccCCCcHHHHHHHHHHH
Confidence 999999999999988876655443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.97 E-value=6e-05 Score=58.47 Aligned_cols=76 Identities=14% Similarity=-0.005 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013800 232 PLLLRNYAQLLQKKG---DLYRAEDYYNHATMADPGDG-ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY 307 (436)
Q Consensus 232 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l 307 (436)
....+++|.++.... +.++|+..++.+++.+|.+. +.++.+|..|+.++ +|++|..+++++++++|++..+....
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklg-dy~~A~~~~~~~L~ieP~n~qA~~L~ 113 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG-EYSMAKRYVDTLFEHERNNKQVGALK 113 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHccCCCcHHHHHHH
Confidence 567777777777553 34578888888887777654 67778888877776 48888888888888888877766544
Q ss_pred H
Q 013800 308 A 308 (436)
Q Consensus 308 a 308 (436)
-
T Consensus 114 ~ 114 (124)
T d2pqrb1 114 S 114 (124)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.54 E-value=0.18 Score=47.33 Aligned_cols=191 Identities=9% Similarity=0.017 Sum_probs=121.9
Q ss_pred hhHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013800 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLL----QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~----~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
...+.......+.+.|..++.......+.....+....... ...+..+.|..++................++.. .
T Consensus 218 ~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~a-l 296 (450)
T d1qsaa1 218 AAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMA-L 296 (450)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHH-H
T ss_pred HHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHH-H
Confidence 33444445556788888888888777766654443333333 335667788888877766655554444444443 4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh-----
Q 013800 278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA----- 352 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----- 352 (436)
..+ ++..+...+...-..........+.+|. .+...|+.++|..+|..+...
T Consensus 297 ~~~-~~~~~~~~~~~l~~~~~~~~r~~YW~gR----------------------a~~~~G~~~~A~~~~~~~a~~~~fYG 353 (450)
T d1qsaa1 297 GTG-DRRGLNTWLARLPMEAKEKDEWRYWQAD----------------------LLLERGREAEAKEILHQLMQQRGFYP 353 (450)
T ss_dssp HHT-CHHHHHHHHHHSCTTGGGSHHHHHHHHH----------------------HHHHTTCHHHHHHHHHHHHTSCSHHH
T ss_pred HcC-ChHHHHHHHHhcCcccccHHHHHHHHHH----------------------HHHHcCChhhHHHHHHHHhcCCChHH
Confidence 444 5888888776653333345677788884 444555555555555544321
Q ss_pred -------------C-------CCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q 013800 353 -------------N-------PGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDE 409 (436)
Q Consensus 353 -------------~-------p~~---~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 409 (436)
+ +.. ...-...+..++..|. ...|...+..++.. .+..-...++.+..+.|.++
T Consensus 354 ~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~-~~~A~~e~~~l~~~--~~~~~~~~la~lA~~~g~~~ 430 (450)
T d1qsaa1 354 MVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNL-DNTARSEWANLVKS--KSKTEQAQLARYAFNNQWWD 430 (450)
T ss_dssp HHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTC-HHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCC-chHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCChh
Confidence 0 000 0123356778889999 99999999888654 34667788899999999999
Q ss_pred HHHHHHHHHH
Q 013800 410 DDSKSSDQFQ 419 (436)
Q Consensus 410 ~A~~~~~~al 419 (436)
.|+....++-
T Consensus 431 ~aI~a~~~~~ 440 (450)
T d1qsaa1 431 LSVQATIAGK 440 (450)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9998877763
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.47 E-value=1 Score=41.92 Aligned_cols=92 Identities=10% Similarity=0.059 Sum_probs=62.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013800 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 336 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 415 (436)
.+..+.|...+........+ ......++......++ +..+...+...-..........+.+|..+..+|+.++|...|
T Consensus 265 ~~~~~~a~~~~~~~~~~~~~-~~~~~w~~~~al~~~~-~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~ 342 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGTGD-RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEIL 342 (450)
T ss_dssp TTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHTC-HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCchHHHHHHHHhhcccccc-hHHHHHHHHHHHHcCC-hHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHH
Confidence 45667777777766655544 4433333334455677 888888876543222234577899999999999999999999
Q ss_pred HHHHhhCCCChhHHh
Q 013800 416 DQFQQVAPIRQGAVT 430 (436)
Q Consensus 416 ~~al~l~p~~~~a~~ 430 (436)
.++.. .+.|.+-..
T Consensus 343 ~~~a~-~~~fYG~LA 356 (450)
T d1qsaa1 343 HQLMQ-QRGFYPMVA 356 (450)
T ss_dssp HHHHT-SCSHHHHHH
T ss_pred HHHhc-CCChHHHHH
Confidence 99876 467777433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.84 E-value=0.13 Score=46.43 Aligned_cols=168 Identities=14% Similarity=0.047 Sum_probs=79.6
Q ss_pred hhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 013800 205 DLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQH 284 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~ 284 (436)
|....+.|.|+.|..+|... .-+-.+..++...++++.|.+.+.++ +....|..+...+..... ..
T Consensus 21 ~~~c~~~~lye~A~~lY~~~--------~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e-~~ 86 (336)
T d1b89a_ 21 GDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKE-FR 86 (336)
T ss_dssp --------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHHCCCHHHHHHHHHhC--------CCHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcH-HH
Confidence 34455566666666666532 11234445666677777776666554 455666666655554432 22
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013800 285 RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYA 364 (436)
Q Consensus 285 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 364 (436)
-|.. ....+ -.+++-..... ..|...|.+++.+.+++.++...+.+...+..++
T Consensus 87 la~i-~~~~~---~~~~d~l~~~v----------------------~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~ 140 (336)
T d1b89a_ 87 LAQM-CGLHI---VVHADELEELI----------------------NYYQDRGYFEELITMLEAALGLERAHMGMFTELA 140 (336)
T ss_dssp HHHH-TTTTT---TTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred HHHH-HHHHh---hcCHHHHHHHH----------------------HHHHHcCChHHHHHHHHHHHcCCccchHHHHHHH
Confidence 2111 00000 11222222223 5556667777777777777766666666666677
Q ss_pred HHHHHhcCCHHHHHHHHHHH-HHhCCCC-------HHHHHHHHHHHHHCCChHHHHHH
Q 013800 365 KLVWELHHDHDKALCYFERA-VQASPAD-------SHVLAAYACFLWETEEDEDDSKS 414 (436)
Q Consensus 365 ~~~~~~g~d~~~A~~~~~~a-l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~ 414 (436)
.++.+.+ .++-++.++.. -..++.. ...|..+..+|.+.|++++|+..
T Consensus 141 ~lyak~~--~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~ 196 (336)
T d1b89a_ 141 ILYSKFK--PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 196 (336)
T ss_dssp HHHHTTC--HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhC--hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHH
Confidence 6665442 34444433321 1011100 02234455556666666666443
|
| >d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3-like protein C species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=92.21 E-value=2.3 Score=35.68 Aligned_cols=43 Identities=7% Similarity=-0.048 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-CHHHHHHHHHH
Q 013800 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMA--DPG-DGESWMQYAKL 275 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~-~~~~~~~la~~ 275 (436)
+-+..+|.+..+.++|++.+.+.+++++. +|+ +.+-...+..+
T Consensus 5 e~lv~~AklaeqaeRy~dm~~~mk~v~~~~~~~~Ls~eERnLlsva 50 (236)
T d1o9da_ 5 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVA 50 (236)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 44566666677777777777777777765 444 33333333333
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.20 E-value=5.2 Score=33.22 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=16.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013800 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPG 264 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 264 (436)
+..+|.+..+.++|++.+.+.+++++.++.
T Consensus 6 ~v~~Aklaeq~eRy~dm~~~mk~~~~~~~e 35 (230)
T d2o02a1 6 LVQKAKLAEQAERYDDMAACMKSVTEQGAE 35 (230)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHhcCCC
Confidence 344555555555555555555555555554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.12 E-value=6.9 Score=34.49 Aligned_cols=101 Identities=6% Similarity=-0.051 Sum_probs=64.2
Q ss_pred hHhhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcC
Q 013800 203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-DPGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~ 281 (436)
.+..++...++++.|.++..++ +....|..+...+....+..-|.. +.. .-.++.-.......+...+
T Consensus 45 rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i-----~~~~~~~~~d~l~~~v~~ye~~~- 113 (336)
T d1b89a_ 45 RLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQM-----CGLHIVVHADELEELINYYQDRG- 113 (336)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHH-----TTTTTTTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHH-----HHHHhhcCHHHHHHHHHHHHHcC-
Confidence 3445667788888888887765 466777777777777666544321 111 1123444444444544444
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013800 282 DQHRALTYFERAALAAPQDSNILAAYACFLWEM 314 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 314 (436)
.+++.+.+++.++...+.+...+..++.++.+.
T Consensus 114 ~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 114 YFEELITMLEAALGLERAHMGMFTELAILYSKF 146 (336)
T ss_dssp CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence 488888888888777777777777777766554
|