Citrus Sinensis ID: 013807

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430------
Protein Sequence
MASLQTSWLSSVSTIKNKNDSSAKQKPKLSSLKLSFFLNATSNNDEASEQPISENSPEPEASLDPVKLAFEKAKAYRKLKESNSDSKYEQNPDKDVARAAVEKAKEYKKNKDTVSFQNGTNSGFKGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRSSSDKNTDYRNFFEAFVEDKTNYPLQEAGSEEGALTQALPYMIFLASPIFVILLIAVQRGSINF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHccccEEEEcccccccEEccccccccccccccccccEEcEEEEEEccHHHccccccccccccccccccccccccEEEEEEccccHcccccccccccccccccccccccEcEccccccccccHHHcccccEEccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MASLQTSWLSSVSTIknkndssakqkpklsslKLSFFLnatsnndeaseqpisenspepeasldpVKLAFEKAKAYRKLKesnsdskyeqnpdKDVARAAVEKAKEykknkdtvsfqngtnsgfkgegrgnlpkevggkkeglkISSIDfmglnfadkkegkglpaglvpvtdpfaegdtpeveiivgdtskfgestvlrpgpkqeenlefykpkvstwgvfprpgnisktfgggrtirpgdvLETAEARAAKEERTRQLLAAYKKSvglnvdpklKSECEKALKdgdslmdsgklkeaLPFYEKVMNKMVFKSELHGLAALQWSIcqdslhrpKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRsssdkntdyRNFFEAFVEdktnyplqeagseegalTQALPYMIFLASPIFVILLIAVQRGSINF
Flexible Loop (DISEMBL)
maslqtswlssvstiknkndssakqkpklssLKLSFFLNATSnndeaseqpisenspepeasldPVKLAFEKAKAYRklkesnsdskyeqnpdkDVARAAVEKAkeykknkdtvsfqngtnsgfkgegrgnlpkevggkkeglKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVgdtskfgestvlrpgpkqeenlefykpkvstwgvfprpgnisktfgggrtirpgDVLETAEARAAKEERTRQLLAAykksvglnvdpklKSECEKAlkdgdslmdsgkLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRSSSDKNTDYRNFFEAFVEDKTNYPLQEAGSEEGALTQALPYMIFLASPIFVILLIAVQRGSINF
Low Complexity Region (SEG)
MASLQTSWLSSVSTIKNKNDssakqkpklsslklsfflNATSNNDEASEQPISENSPEPEASLDPVKLAFEKAKAYRKLKESNSDSKYEQNPDKDVARAAVEKAKEYKKNKDTVSFQNGTNSGFKGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLetaearaakeertrQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRSSSDKNTDYRNFFEAFVEDKTNYPLQEAGSEEGALTQALPYMIFLASPIFVILLIAVQRGSINF
Disordered region (IsUnstruct)
************************************************************************************************************************************************ISSIDFMGLNFAD*****GLPAGLVPVTDPFAEGDTPEVEIIVGD*******************LEFYKPKVSTWGVFPRPGNISKTFGGGRTI***********************AAY*********************************EALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL******LV***ARQFMFSFQ****************YRNFFEAFVEDKTNYPL******EGALTQALPYMIFLASPIFVILLIAVQR*****
Disordered Region (DISOPRED)
*******************************************************************LAFEK************************************************************************ISSIDFMG***************************TPEVEIIVGD**************************VSTWGVFPRPGNISKTFG**********************************************CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ***********R*FMFSFQA***************YRNFFEAFV*********************LPYMIFLASPIFVILLIAVQRG****
Disordered Region (DISEMBL)
MASLQTSWLSSVS**************KLSSLKLSFFLNATSN*******************LDPVKLAFEKAKAY*******************VARAAVEKAKEYKKNKDTVSFQNGTNSGFKGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMM********NTDYRNFFEAFVEDKTNYPLQEAGSEEGALTQALPYMIFLASPIFVILLIAVQRGSINF
Disordered Region (DISPRO)
*************T**NKNDSSAKQKPKLSSLKLSFFLNA*********************SLDPVKLAFEKAKAYRKLKE****SK*****DKDVARAAVEKAKE*KKNKDTVSFQNGTNSGFKGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFG**************LEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPG*VLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRSSSDKNTDYRNFFEAFVEDKTNYPLQEAGSEEGALTQALPYMIFLASPIFVILLIAVQRGS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLQTSWLSSVSTIKNKNDSSAKQKPKLSSLKLSFFLNATSNNDEASEQPISENSPEPEASLDPVKLAFEKAKAYRKLKESNSDSKYEQNPDKDVARAAVEKAKEYKKNKDTVSFQNGTNSGFKGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRSSSDKNTDYRNFFEAFVEDKTNYPLQEAGSEEGALTQALPYMIFLASPIFVILLIAVQRGSINF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	436
255544061	452	conserved hypothetical protein [Ricinus	0.928	0.896	0.621	1e-142
356538737	442	PREDICTED: uncharacterized protein LOC10	0.981	0.968	0.559	1e-133
296081287	454	unnamed protein product [Vitis vinifera]	0.951	0.914	0.559	1e-129
225449870	457	PREDICTED: uncharacterized protein LOC10	0.926	0.884	0.542	1e-129
449452134	475	PREDICTED: uncharacterized protein LOC10	0.864	0.793	0.579	1e-125
224053314	315	predicted protein [Populus trichocarpa]	0.681	0.942	0.725	1e-124
357473415	442	hypothetical protein MTR_4g071010 [Medic	0.912	0.900	0.572	1e-121
297823763	458	binding protein [Arabidopsis lyrata subs	0.965	0.919	0.549	1e-120
79570570	465	uncharacterized protein [Arabidopsis tha	0.963	0.903	0.560	1e-120
388491228	442	unknown [Medicago truncatula]	0.912	0.900	0.570	1e-120

>gi|255544061|ref|XP_002513093.1| conserved hypothetical protein [Ricinus communis] gi|223548104|gb|EEF49596.1| conserved hypothetical protein [Ricinus communis]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 276/444 (62%), Positives = 333/444 (75%), Gaps = 39/444 (8%)

Query: 25  QKPKLSSL--------KLSFFLNATSNNDEASEQPISENSPEPEASLDPVKLAFEKAKAY 76
           QKP  +SL        K+SF LN +  N E+S+ P  E++PEP+   DPVKLAFEKAKAY
Sbjct: 15  QKPTTTSLLPSKTSFFKVSFSLNPS--NAESSQNP-PESTPEPDP--DPVKLAFEKAKAY 69

Query: 77  RKLKESNSDSKYEQNP----------DKDV---ARAAVEKAKEYKKNKDTVSFQNGT--- 120
           +K  E    +K EQNP          DK+V    + A+EKA+EYKKN+  V  +  T   
Sbjct: 70  KKTIEETKKAKLEQNPVEGSAGNNGKDKEVPVSVKVAMEKAREYKKNQ-VVGTKGATESE 128

Query: 121 -NSGFKGEGRGNLPK----EVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPF 175
            +SG K    GNL +    +   KK+ L ISSIDFMGLNFADKK G+GLPAGL PV DPF
Sbjct: 129 MSSGLKARSEGNLQRGSIEKTATKKDKLSISSIDFMGLNFADKKTGRGLPAGLAPVIDPF 188

Query: 176 AEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISKTFGGG 235
            EG+ PEVEIIVGDT  F + T   P P Q+E+ + YKPKVSTWGVFPRPGNISKTFGGG
Sbjct: 189 PEGNLPEVEIIVGDTDNFDDPTTSMPKPSQDESSDVYKPKVSTWGVFPRPGNISKTFGGG 248

Query: 236 RTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGK 295
           RTIRPGDVLETAE RAAK++RT+QLLAAY+K +GL++DPK+K ECEKALKDGDSLMDSGK
Sbjct: 249 RTIRPGDVLETAEERAAKDDRTKQLLAAYRKKMGLSIDPKIKFECEKALKDGDSLMDSGK 308

Query: 296 LKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKR 355
           LKEA+P+Y+KV++K+ F+SELHGLAALQWSICQDSL R  EA+ MYEKLQSHPNA VSK+
Sbjct: 309 LKEAVPYYQKVIDKLPFQSELHGLAALQWSICQDSLSRQNEAQAMYEKLQSHPNAKVSKK 368

Query: 356 ARQFMFSFQAMEMMKVRSSS--DKNTDYRNFFEAFVEDKTNYP--LQEAGSEEGALTQAL 411
           ARQFMFSFQAMEM+KV  SS   ++T Y+N+FEAFVEDKT Y     E+  E G L+QAL
Sbjct: 369 ARQFMFSFQAMEMLKVTGSSFLPESTGYQNYFEAFVEDKTKYSPGEGESEEEGGGLSQAL 428

Query: 412 PYMIFLASPIFVILLIAVQRGSIN 435
           PY++FL SP+F++LL+AVQ GSI+
Sbjct: 429 PYVLFLVSPVFIVLLMAVQGGSIH 452

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538737|ref|XP_003537857.1| PREDICTED: uncharacterized protein LOC100784194 [Glycine max]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 249/445 (55%), Positives = 316/445 (71%), Gaps = 17/445 (3%)

Query: 1   MASLQTSWLSSVSTIKNKNDSSAKQKPKLSSLKLSFFLNATSNNDEASEQPISENSPEPE 60
           MA LQ  W SS+  + +    +A   P  +         A   ++  S +P S ++PEP 
Sbjct: 1   MACLQPPWFSSLRVV-SPAKLAAGPPPSTTYKPAKLLFWAVGPDNAESSEPASPDAPEPA 59

Query: 61  ASLDPVKLAFEKAKAYRKLKESNSDSKYEQNPDK-------DVARAAVEKAKEYKKNKDT 113
           A +DPV+LAF KA AY+    ++ +S  E+N          D  + A+EKAK+YK+NK  
Sbjct: 60  APVDPVELAFSKANAYKADYNNDENSAEERNVGDETPKDLPDSVKIAIEKAKKYKQNKAV 119

Query: 114 VSFQNGTNSGFKGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTD 173
            +    T        R +   +VG K E L +S +DF GL+FADKK  +GLP GLVP+++
Sbjct: 120 AAVTETTQGSLGVSERSSGKNKVGKKGE-LSVSRMDFAGLDFADKKMTRGLPPGLVPISE 178

Query: 174 PFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQ---EENLEFYKPKVSTWGVFPRPGNISK 230
           P+ +GD PEVE+I+GDTSKF ++T   P P+Q   E+  E YKPKVSTWGVFPRPGNISK
Sbjct: 179 PYFDGDLPEVELIIGDTSKFDDATT--PEPEQTNKEDEAELYKPKVSTWGVFPRPGNISK 236

Query: 231 TFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSL 290
           TFGGGR IRPG+VLET E +A KE RT+QLLAAYKK  GLNVDPKLKSECE+ALKDGD L
Sbjct: 237 TFGGGRVIRPGEVLETKEEKAVKEARTKQLLAAYKKKTGLNVDPKLKSECEEALKDGDLL 296

Query: 291 MDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNA 350
           M+ GKLKEALP+YEKVM+K+ F+SELHGLAALQWSICQDSL R  EAR MYEKL+SHPN 
Sbjct: 297 MNVGKLKEALPYYEKVMDKLTFQSELHGLAALQWSICQDSLSRSNEARGMYEKLKSHPNP 356

Query: 351 LVSKRARQFMFSFQAMEMMKVRSSSD---KNTDYRNFFEAFVEDKTNYPLQEAGSEEGAL 407
            VSK+ARQFM+SFQAMEMMK+ + S    KN+DY+N+F+AFVE+K+NYP  +   +E A+
Sbjct: 357 KVSKKARQFMYSFQAMEMMKMTTGSQFYLKNSDYQNYFDAFVENKSNYPGGDGPVQESAM 416

Query: 408 TQALPYMIFLASPIFVILLIAVQRG 432
            Q LPY++FL SPIFV+LLIAV++G
Sbjct: 417 NQVLPYILFLVSPIFVVLLIAVRKG 441

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081287|emb|CBI17731.3| unnamed protein product [Vitis vinifera]

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 255/456 (55%), Positives = 316/456 (69%), Gaps = 41/456 (8%)

Query: 1   MASLQTSWLSSVSTIKNKNDSSAKQKPKLSSLKLSFFLNATSNNDEASEQPISENSPEP- 59
           ++S + S  +S + I N         P++  LK+SF  + + +N E+S      +   P 
Sbjct: 17  ISSTKPSLFTSTTPILN---------PQIRPLKVSF--SQSQSNAESSPSNSPNSGEGPL 65

Query: 60  ---EASLDPVKLAFEKAKAYRKLKESNSDSKYEQNPDKDV----------------ARAA 100
                S DP KL+F +AK Y+K  +   D     NP                     + A
Sbjct: 66  EVKPGSSDPDKLSFARAKEYKKTTKQEMDG----NPGLGSEGNGNGGGEAQEMPVSVKIA 121

Query: 101 VEKAKEYKKNKDTV--SFQNGTNSGFKGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADK 158
           +EKAKEY KNK  V  S     + G  G     + ++   KKE L ISSIDF+GLNF+DK
Sbjct: 122 LEKAKEYTKNKGVVGDSRSEALSGGNAGNLGNGIVEKGDDKKEQLAISSIDFVGLNFSDK 181

Query: 159 KEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVST 218
           K G+GLPAGLVPV+DPF EGD P VE+IVGDTSKF ++T   P P Q++N + YKPKVST
Sbjct: 182 KTGRGLPAGLVPVSDPFPEGDLPGVELIVGDTSKFEDATSSNPKPTQDDNSDLYKPKVST 241

Query: 219 WGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKS 278
           WGVFPRP NISKTFGGGR IRPG+VLETA+ +AAKE RTRQLLAAYK  +GLN+DPKLKS
Sbjct: 242 WGVFPRPNNISKTFGGGRVIRPGEVLETADDKAAKEARTRQLLAAYKTKIGLNIDPKLKS 301

Query: 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEAR 338
           EC++ALK+GDSLM+ GKLKEALP+YEKVM+K+ F+SELHGLAALQWSIC DSL RP EAR
Sbjct: 302 ECDQALKNGDSLMNIGKLKEALPYYEKVMDKLTFQSELHGLAALQWSICLDSLSRPDEAR 361

Query: 339 IMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRSSSD-KNTDYRNFFEAFVEDKTNYPL 397
           +MYE+LQ+HPNALVSK+ARQ +F FQAMEMMKV S    KNT Y+NFFEAF+EDK NY L
Sbjct: 362 VMYERLQTHPNALVSKKARQLIFGFQAMEMMKVTSQLPLKNTGYQNFFEAFIEDKANYSL 421

Query: 398 QEAGSEEGALTQALPYMIFLASPIFVILLIAVQRGS 433
           ++    E  L QALPY+IFL SPIF++ LIA+Q+G+
Sbjct: 422 KD---NEVELGQALPYIIFLVSPIFIVFLIALQKGT 454

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449870|ref|XP_002265393.1| PREDICTED: uncharacterized protein LOC100248180 [Vitis vinifera]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 255/470 (54%), Positives = 314/470 (66%), Gaps = 66/470 (14%)

Query: 1   MASLQTSWLSSVSTIKNKNDSSAKQKPKLSSLKLSFFLNATSNNDEASEQPISENSPEP- 59
           ++S + S  +S + I N         P++  LK+SF  + + +N E+S      +   P 
Sbjct: 17  ISSTKPSLFTSTTPILN---------PQIRPLKVSF--SQSQSNAESSPSNSPNSGEGPL 65

Query: 60  ---EASLDPVKLAFEKAKAYRKLKESNSDSKYEQNPDKDV----------------ARAA 100
                S DP KL+F +AK Y+K  +   D     NP                     + A
Sbjct: 66  EVKPGSSDPDKLSFARAKEYKKTTKQEMDG----NPGLGSEGNGNGGGEAQEMPVSVKIA 121

Query: 101 VEKAKEYKKNKDTVSFQNGTNSGFKGEGRGNLPKEV----------------GGKKEGLK 144
           +EKAKEY KNK           G  G+ R     E+                  KKE L 
Sbjct: 122 LEKAKEYTKNK-----------GVVGDSRSEALSELTGGNAGNLGNGIVEKGDDKKEQLA 170

Query: 145 ISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPK 204
           ISSIDF+GLNF+DKK G+GLPAGLVPV+DPF EGD P VE+IVGDTSKF ++T   P P 
Sbjct: 171 ISSIDFVGLNFSDKKTGRGLPAGLVPVSDPFPEGDLPGVELIVGDTSKFEDATSSNPKPT 230

Query: 205 QEENLEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAY 264
           Q++N + YKPKVSTWGVFPRP NISKTFGGGR IRPG+VLETA+ +AAKE RTRQLLAAY
Sbjct: 231 QDDNSDLYKPKVSTWGVFPRPNNISKTFGGGRVIRPGEVLETADDKAAKEARTRQLLAAY 290

Query: 265 KKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQW 324
           K  +GLN+DPKLKSEC++ALK+GDSLM+ GKLKEALP+YEKVM+K+ F+SELHGLAALQW
Sbjct: 291 KTKIGLNIDPKLKSECDQALKNGDSLMNIGKLKEALPYYEKVMDKLTFQSELHGLAALQW 350

Query: 325 SICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRSSSD-KNTDYRN 383
           SIC DSL RP EAR+MYE+LQ+HPNALVSK+ARQ +F FQAMEMMKV S    KNT Y+N
Sbjct: 351 SICLDSLSRPDEARVMYERLQTHPNALVSKKARQLIFGFQAMEMMKVTSQLPLKNTGYQN 410

Query: 384 FFEAFVEDKTNYPLQEAGSEEGALTQALPYMIFLASPIFVILLIAVQRGS 433
           FFEAF+EDK NY L++    E  L QALPY+IFL SPIF++ LIA+Q+G+
Sbjct: 411 FFEAFIEDKANYSLKD---NEVELGQALPYIIFLVSPIFIVFLIALQKGT 457

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452134|ref|XP_004143815.1| PREDICTED: uncharacterized protein LOC101215292 [Cucumis sativus]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 241/416 (57%), Positives = 289/416 (69%), Gaps = 39/416 (9%)

Query: 52  ISENSPEPEASLDPVKLAFEKAKAYRKLKESNS--------------------------- 84
           +S+ +P P   LDPVKLAFE+AKAY+KL +S S                           
Sbjct: 61  VSDAAPPP---LDPVKLAFERAKAYKKLSKSGSNLNVELKPGVGSEGNSVQTGKSGVLSF 117

Query: 85  DSKYEQNPDKDVARAAVEKAKEYKKNKDTVSFQN-----GTNSGFKGEGRGNLP-KEVGG 138
           D   EQ   +   R AVE A E K     V+         TN G      GNL  K+ G 
Sbjct: 118 DGADEQRKMQGGVRVAVESANEVKGEAKVVTDGTKGGVINTNEGLNDRDGGNLGNKQKGD 177

Query: 139 KKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTV 198
           KK  L ISSIDF+GL FADKK+ +GLPAGLVP++DPF+  D PEVEIIVGD+SKF ++TV
Sbjct: 178 KKGELSISSIDFIGLGFADKKKSRGLPAGLVPISDPFSVEDLPEVEIIVGDSSKFDDATV 237

Query: 199 LRPGPKQEENLEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTR 258
               P QE++ +FYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLET E +A KE RT+
Sbjct: 238 SEIKPTQEDDSDFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETDEEKAVKEARTK 297

Query: 259 QLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG 318
           +L+AAYKK  GL +D KLKSECE AL++GDSLM+ GKLKEALP+YE +M K+ F+SELHG
Sbjct: 298 ELIAAYKKKFGLTIDAKLKSECEMALEEGDSLMNDGKLKEALPYYETIMEKVNFQSELHG 357

Query: 319 LAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRS---SS 375
           LAALQWSICQDSL RP  AR MYEKL+SHPN  VSK+ARQFMFSFQAMEMMKV +     
Sbjct: 358 LAALQWSICQDSLSRPDVAREMYEKLKSHPNPRVSKKARQFMFSFQAMEMMKVTTSSSFL 417

Query: 376 DKNTDYRNFFEAFVEDKTNYPLQEAGSEEGALTQALPYMIFLASPIFVILLIAVQR 431
             ++ YRN+FEAF+++K NY   E+G  EG L Q+LPY+IFL SPI ++L  AVQ+
Sbjct: 418 SNDSSYRNYFEAFLDNKLNYSADESGIGEGVLNQSLPYVIFLLSPILLVLFAAVQK 473

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053314|ref|XP_002297759.1| predicted protein [Populus trichocarpa] gi|222845017|gb|EEE82564.1| predicted protein [Populus trichocarpa]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/299 (72%), Positives = 252/299 (84%), Gaps = 2/299 (0%)

Query: 139 KKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTV 198
           K++ L ISSIDF+GL FADKK+G+GLPAGLVP+TDPF+EG+ P+VEIIVGDTSKF + + 
Sbjct: 17  KEQKLSISSIDFVGLEFADKKKGRGLPAGLVPITDPFSEGNLPDVEIIVGDTSKFEDPST 76

Query: 199 LRPGPKQEENLEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTR 258
           L   P QE+N + YKPKVSTWGVFPRPGNISKTFGGG+TIRPGD LETAEARAAK+ERT+
Sbjct: 77  LTSKPTQEDNPDLYKPKVSTWGVFPRPGNISKTFGGGKTIRPGDELETAEARAAKDERTK 136

Query: 259 QLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG 318
           QL+AAY+KS+GLNVDP +K ECEKALKDGDSLMDSGKL +ALP+Y+ VM+K+ FKSELHG
Sbjct: 137 QLIAAYRKSIGLNVDPNVKLECEKALKDGDSLMDSGKLNDALPYYQMVMDKLPFKSELHG 196

Query: 319 LAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRSS--SD 376
           LAALQWSICQDSL RP EAR MYEKLQSHPN  VSK ARQFMFSFQAME +K   S  S 
Sbjct: 197 LAALQWSICQDSLSRPNEARAMYEKLQSHPNVKVSKIARQFMFSFQAMEKLKFTGSNFSP 256

Query: 377 KNTDYRNFFEAFVEDKTNYPLQEAGSEEGALTQALPYMIFLASPIFVILLIAVQRGSIN 435
            +T Y+ +FE FVEDKT+YP  EAG E G L QALPYMIFL SPIF++L  A++ G+ N
Sbjct: 257 TSTGYQYYFEKFVEDKTSYPQGEAGIEIGVLNQALPYMIFLVSPIFMVLFAALRGGNTN 315

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473415|ref|XP_003606992.1| hypothetical protein MTR_4g071010 [Medicago truncatula] gi|355508047|gb|AES89189.1| hypothetical protein MTR_4g071010 [Medicago truncatula]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/419 (57%), Positives = 308/419 (73%), Gaps = 21/419 (5%)

Query: 29  LSSLKLSFFLNATSNNDEASEQPISENSPEPEASLDPVKLAFEKAKAYRKLKESNSDSKY 88
           L + KL   +N   NN E+SE  ++    E  AS+DP+KLAF KAKAY++  +SN+D   
Sbjct: 27  LKTTKLCCVMN-KENNKESSE--VNSIEAEKTASVDPIKLAFNKAKAYKESIKSNTDLGI 83

Query: 89  EQNP----DKDVA---RAAVEKAKEYKKNKDTVSFQNGTNSGFKGEGRGNLPKEVG---- 137
           EQN      KDV+   + A+EKAK+YK+NK     +  T+ G +G       + V     
Sbjct: 84  EQNSADGGKKDVSVSVKIAMEKAKKYKQNKGVAVSE--TDQGLQGGSESTWGENVNDNSV 141

Query: 138 GKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGEST 197
            KK  L +S IDF+GL FAD K+ +GLP GLVP +DPF++ D PEVE+IVGDT+ F  +T
Sbjct: 142 SKKGELSVSKIDFVGLGFADNKKTRGLPPGLVPFSDPFSDDDLPEVELIVGDTNNFNATT 201

Query: 198 VLRPGPKQ--EENLEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEE 255
              P P+Q  ++  E YKPKVSTWGVFPRP NISKT+GGGRTIRPG+VLE  E +AAKE 
Sbjct: 202 TTAPQPEQTKDDESELYKPKVSTWGVFPRPNNISKTYGGGRTIRPGEVLENEEEKAAKEA 261

Query: 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE 315
           RT+Q+LAAYKK  GL++DPKLK ECE+ALKDGD LMD+GKLK+ALP+YEKV++K+ FKSE
Sbjct: 262 RTKQMLAAYKKKYGLSIDPKLKIECEEALKDGDFLMDAGKLKDALPYYEKVIDKLPFKSE 321

Query: 316 LHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRSSS 375
           LHGLAALQWSICQDSL R  EAR MYEKLQSHP+  V K+AR FM+SFQAMEMMKVR+ S
Sbjct: 322 LHGLAALQWSICQDSLSRHNEARSMYEKLQSHPSVKVGKKARHFMYSFQAMEMMKVRTRS 381

Query: 376 ---DKNTDYRNFFEAFVEDKTNYPLQEAGSEEGALTQALPYMIFLASPIFVILLIAVQR 431
               KNT Y+++F+AF+E+K+NYP+++  ++E  L Q L Y++FL SPIFV+LL+AVQ+
Sbjct: 382 SRYSKNTFYQSYFDAFIENKSNYPVKDEVAQESDLNQVLLYIVFLISPIFVVLLLAVQK 440

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823763|ref|XP_002879764.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297325603|gb|EFH56023.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 246/448 (54%), Positives = 316/448 (70%), Gaps = 27/448 (6%)

Query: 1   MASLQTSWLSSVSTIKNKNDSSAKQKPKLSSLKLSFFLNATSNNDEASEQPISENSPEPE 60
           MAS   SWLSS  T          Q+PK  SLKLS F   ++++ + S         E E
Sbjct: 25  MASFNHSWLSSPLTETPTCFLYPSQQPK--SLKLSLFRTRSNSSSDRSS--------EVE 74

Query: 61  ASLDPVKLAFEKAKAYRKLKESNSDSKYEQNP-DKDV---ARAAVEKAKEYKKNK----D 112
            ++DPVKLA +KA+AY+K K    +   EQN  D+++    +AA++KA +YKK K    D
Sbjct: 75  LAVDPVKLALKKAEAYKKSKSEGKER--EQNAGDEELPLSVKAAMQKANDYKKRKGLGTD 132

Query: 113 TV--SFQNGTNSGFKGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVP 170
            V  +  + T   F       + ++   KK+ LK+SSIDFMGL FADKK  +GLPAGLVP
Sbjct: 133 AVEEAKPSSTEQSFV-RSSNKVVEDNDVKKKELKVSSIDFMGLGFADKKSTRGLPAGLVP 191

Query: 171 VTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISK 230
           + D   EGD PEVE IVGD ++F E  V     + + N + YKPKVSTWGVFPRP NISK
Sbjct: 192 IVDYLPEGDLPEVEFIVGDKTRFAEK-VKEVEQEGDGNSDVYKPKVSTWGVFPRPSNISK 250

Query: 231 TFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSL 290
           TFGGGRT+RPGD +ETAE R  +EE+T++LL AYK+S+GLN+DPKLK ECEKA+++G+SL
Sbjct: 251 TFGGGRTLRPGDSVETAEERIVREEQTKKLLIAYKESIGLNIDPKLKLECEKAIEEGNSL 310

Query: 291 MDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNA 350
           MDSGKLKEALP+YEKVM K+VFKSELHGLAALQWSICQDSL +  +AR MYEKL SHPN+
Sbjct: 311 MDSGKLKEALPYYEKVMEKIVFKSELHGLAALQWSICQDSLRKTDKARRMYEKLISHPNS 370

Query: 351 LVSKRARQFMFSFQAMEMMKVRSSS--DKNTDYRNFFEAFVEDKTNYPLQEAGSEEG-AL 407
            VSK+ARQFMFSFQAMEM+KV+ SS  D+NT Y+++FEAFV+DKT+Y  QE    E   +
Sbjct: 371 GVSKKARQFMFSFQAMEMLKVKGSSFIDENTGYQDYFEAFVKDKTDYQAQEEKEGEAMGI 430

Query: 408 TQALPYMIFLASPIFVILLIAVQRGSIN 435
            + L Y+I LASPI ++ ++A QRG+++
Sbjct: 431 NETLLYVILLASPILMVFIVAAQRGNMH 458

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79570570|ref|NP_181412.2| uncharacterized protein [Arabidopsis thaliana] gi|330254489|gb|AEC09583.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 249/444 (56%), Positives = 310/444 (69%), Gaps = 24/444 (5%)

Query: 1   MASLQTSWLSSVSTIKNKNDSSAKQKPKLSSLKLSFFLNATSNNDEASEQPISENSPEPE 60
           MAS   SWLSS  T       S  Q PK  SLKLS F   ++++             E E
Sbjct: 31  MASFNHSWLSSPLTETPAFFFSPSQHPK--SLKLSLFRTRSNSSSPDRSS-------EVE 81

Query: 61  ASLDPVKLAFEKAKAYRKLKESNSDSKYEQNP-DKDV---ARAAVEKAKEYKKNK----D 112
             +DPVKLA +KA+AY+K K  +   K E+N  D+++    +AA++KA +YKK K    D
Sbjct: 82  LDVDPVKLALKKAEAYKKSK--SEQKKPEKNAGDEELPLSVKAAMQKANDYKKRKGLGTD 139

Query: 113 TVSFQNGTNSGFKGEGRGN-LPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPV 171
            V+    +N+        N + ++   KK+ LK+SSIDFMGL FADKK  +GLPAGLVPV
Sbjct: 140 AVAKAKPSNTDQSFVRLANKVVEDNDVKKKELKVSSIDFMGLGFADKKSTRGLPAGLVPV 199

Query: 172 TDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISKT 231
            D   EGD PEVE IVGD ++F E  V     + + N + YKPKVSTWGVFPRP NISKT
Sbjct: 200 VDYLPEGDLPEVEFIVGDKTRFAEK-VKEVEQEGDGNSDVYKPKVSTWGVFPRPSNISKT 258

Query: 232 FGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLM 291
           FGGGRT+RPGD +ETAE R  +EE+T++LL AYK+S+GLN+DPKLK ECEKA+ +G+SLM
Sbjct: 259 FGGGRTLRPGDSVETAEERIVREEKTKKLLIAYKESLGLNIDPKLKLECEKAIDEGNSLM 318

Query: 292 DSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNAL 351
           DSGKLKEALP+YEKVM K+VFKSELHGLAALQWSICQDSL +  +AR MYEKL SHPN  
Sbjct: 319 DSGKLKEALPYYEKVMEKIVFKSELHGLAALQWSICQDSLRKTDKARRMYEKLISHPNPG 378

Query: 352 VSKRARQFMFSFQAMEMMKVRSSS--DKNTDYRNFFEAFVEDKTNYPLQEAG-SEEGALT 408
           VSK+ARQFMFSFQAMEM+KV+ SS  + NT Y+++FEAFVEDKTNY  QE    EE  + 
Sbjct: 379 VSKKARQFMFSFQAMEMLKVKGSSFAEGNTGYQDYFEAFVEDKTNYKAQEEKEGEEMGIN 438

Query: 409 QALPYMIFLASPIFVILLIAVQRG 432
           + L Y+I LASPI ++ ++A QRG
Sbjct: 439 ETLLYVILLASPILMVFIVAAQRG 462

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491228|gb|AFK33680.1| unknown [Medicago truncatula]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/419 (57%), Positives = 306/419 (73%), Gaps = 21/419 (5%)

Query: 29  LSSLKLSFFLNATSNNDEASEQPISENSPEPEASLDPVKLAFEKAKAYRKLKESNSDSKY 88
           L + KL   +N   NN E+SE  ++    E  AS+DP+KLAF KAKAY++  +SN+D   
Sbjct: 27  LKTTKLCCVMNK-ENNKESSE--VNSIEAEKTASVDPIKLAFNKAKAYKESIKSNTDLGI 83

Query: 89  EQNP----DKDVA---RAAVEKAKEYKKNKDTVSFQNGTNSGFKGEGRGNLPKEVG---- 137
           EQN      KDV+   + A+EKAK+YK+NK     +  T+ G +G       + V     
Sbjct: 84  EQNSADGGKKDVSVSVKIAMEKAKKYKQNKGVAVSE--TDQGLQGGSESTWGENVNDNSV 141

Query: 138 GKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGEST 197
            KK  L +S IDF+GL FAD K+ +GLP GLVP +DPF++ D PEVE+IVGDT+ F  +T
Sbjct: 142 SKKGELSVSKIDFVGLGFADNKKTRGLPPGLVPFSDPFSDDDLPEVELIVGDTNNFNATT 201

Query: 198 VLRPGPKQ--EENLEFYKPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEE 255
              P P+Q  ++  E YKPKVSTWGVFPRP NISKT+GGGRTIRPG+VLE  E +AAKE 
Sbjct: 202 TTAPQPEQTKDDESELYKPKVSTWGVFPRPNNISKTYGGGRTIRPGEVLENEEEKAAKEA 261

Query: 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE 315
           RT+Q+LAAYKK  GL++DPKLK ECE+ALKDGD LMD+GKLK+ALP+YEKV++K+ FKSE
Sbjct: 262 RTKQMLAAYKKKYGLSIDPKLKIECEEALKDGDFLMDAGKLKDALPYYEKVIDKLPFKSE 321

Query: 316 LHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRSSS 375
           LHGLAALQWSICQDSL R  EAR MYEKLQSHP+  V K+AR FM+SFQAMEMMKVR+ S
Sbjct: 322 LHGLAALQWSICQDSLSRHNEARSMYEKLQSHPSVKVGKKARHFMYSFQAMEMMKVRTRS 381

Query: 376 ---DKNTDYRNFFEAFVEDKTNYPLQEAGSEEGALTQALPYMIFLASPIFVILLIAVQR 431
               KNT Y+++F+AF+E+K+NYP+++  ++E  L Q L Y++FL SPIFV LL+ VQ+
Sbjct: 382 SRYSKNTFYQSYFDAFIENKSNYPVKDEVAQESDLNQVLLYIVFLISPIFVALLLTVQK 440

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	436
TAIR|locus:2040369	465	AT2G38780 "AT2G38780" [Arabido	0.963	0.903	0.533	5.7e-107

TAIR|locus:2040369 AT2G38780 "AT2G38780" [Arabidopsis thaliana (taxid:3702)]

 Score = 1058 (377.5 bits), Expect = 5.7e-107, P = 5.7e-107
 Identities = 237/444 (53%), Positives = 290/444 (65%)

Query:     1 MASLQTSWLSSVSTIKNKNDXXXXXXXXXXXXXXXXXXNATSNNDEASEQPISENSPEPE 60
             MAS   SWLSS  T   +                       SN    S  P  + S E E
Sbjct:    31 MASFNHSWLSSPLT---ETPAFFFSPSQHPKSLKLSLFRTRSN----SSSP--DRSSEVE 81

Query:    61 ASLDPVKLAFEKAKAYRKLKESNSDSKYEQNP-DKDV---ARAAVEKAKEYKKNK----D 112
               +DPVKLA +KA+AY+K K  +   K E+N  D+++    +AA++KA +YKK K    D
Sbjct:    82 LDVDPVKLALKKAEAYKKSK--SEQKKPEKNAGDEELPLSVKAAMQKANDYKKRKGLGTD 139

Query:   113 TVSFQNGTNSGFKGEGRGNLPKEVGG-KKEGLKISSIDFMGLNFADKKEGKGLPAGLVPV 171
              V+    +N+        N   E    KK+ LK+SSIDFMGL FADKK  +GLPAGLVPV
Sbjct:   140 AVAKAKPSNTDQSFVRLANKVVEDNDVKKKELKVSSIDFMGLGFADKKSTRGLPAGLVPV 199

Query:   172 TDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISKT 231
              D   EGD PEVE IVGD ++F E  V     + + N + YKPKVSTWGVFPRP NISKT
Sbjct:   200 VDYLPEGDLPEVEFIVGDKTRFAEK-VKEVEQEGDGNSDVYKPKVSTWGVFPRPSNISKT 258

Query:   232 FGGGRTIRPGDVLXXXXXXXXXXXXXXQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLM 291
             FGGGRT+RPGD +              +LL AYK+S+GLN+DPKLK ECEKA+ +G+SLM
Sbjct:   259 FGGGRTLRPGDSVETAEERIVREEKTKKLLIAYKESLGLNIDPKLKLECEKAIDEGNSLM 318

Query:   292 DSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNAL 351
             DSGKLKEALP+YEKVM K+VFKSELHGLAALQWSICQDSL +  +AR MYEKL SHPN  
Sbjct:   319 DSGKLKEALPYYEKVMEKIVFKSELHGLAALQWSICQDSLRKTDKARRMYEKLISHPNPG 378

Query:   352 VSKRARQFMFSFQAMEMMKVRSSS--DKNTDYRNFFEAFVEDKTNYPLQEAGS-EEGALT 408
             VSK+ARQFMFSFQAMEM+KV+ SS  + NT Y+++FEAFVEDKTNY  QE    EE  + 
Sbjct:   379 VSKKARQFMFSFQAMEMLKVKGSSFAEGNTGYQDYFEAFVEDKTNYKAQEEKEGEEMGIN 438

Query:   409 QALPYMIFLASPIFVILLIAVQRG 432
             + L Y+I LASPI ++ ++A QRG
Sbjct:   439 ETLLYVILLASPILMVFIVAAQRG 462


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.130   0.366    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      436       404   0.00099  117 3  11 23  0.48    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  237 KB (2128 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  41.27u 0.08s 41.35t   Elapsed:  00:00:25
  Total cpu time:  41.27u 0.08s 41.35t   Elapsed:  00:00:25
  Start:  Mon May 20 14:53:56 2013   End:  Mon May 20 14:54:21 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00005502001 SubName- Full=Chromosome chr13 scaffold_152, whole genome shotgun sequence; (454 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	436
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.15
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.02
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.88
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.83
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.81
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.64
PRK10803	263	tol-pal system protein YbgF; Provisional	97.62
PF13512	142	TPR_18: Tetratricopeptide repeat	97.48
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.4
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.32
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.3
PF12688	120	TPR_5: Tetratrico peptide repeat	97.24
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.21
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.18
PF13371	73	TPR_9: Tetratricopeptide repeat	97.13
PRK15359	144	type III secretion system chaperone protein SscB;	97.09
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.03
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.03
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.91
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.76
PF12688	120	TPR_5: Tetratrico peptide repeat	96.66
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.65
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.62
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.58
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.57
PRK15359	144	type III secretion system chaperone protein SscB;	96.52
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.45
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.44
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.39
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.32
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.32
KOG0553	304	consensus TPR repeat-containing protein [General f	96.23
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.19
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.16
TIGR02552	135	LcrH_SycD type III secretion low calcium response	96.16
PRK10803	263	tol-pal system protein YbgF; Provisional	96.15
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.09
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	96.08
PRK10370	198	formate-dependent nitrite reductase complex subuni	96.05
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	95.99
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	95.98
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	95.62
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	95.59
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	95.52
PRK11788	389	tetratricopeptide repeat protein; Provisional	95.5
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	95.45
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	95.43
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	95.29
PRK11788	389	tetratricopeptide repeat protein; Provisional	95.26
PRK11189	296	lipoprotein NlpI; Provisional	95.03
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	95.01
PRK12370	553	invasion protein regulator; Provisional	94.91
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	94.81
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	94.74
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	94.74
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	94.47
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	94.44
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	94.41
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	94.34
PRK12370	553	invasion protein regulator; Provisional	94.29
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.26
PF13428	44	TPR_14: Tetratricopeptide repeat	93.98
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	93.97
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	93.92
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	93.89
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	93.83
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	93.57
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	93.45
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	93.35
PRK15331	165	chaperone protein SicA; Provisional	93.26
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	92.82
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	92.58
KOG0547	606	consensus Translocase of outer mitochondrial membr	92.53
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	92.39
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	92.31
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	92.11
PRK11189	296	lipoprotein NlpI; Provisional	91.85
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	91.85
KOG4234	271	consensus TPR repeat-containing protein [General f	91.75
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	91.65
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	91.55
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	91.53
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	91.5
COG4105	254	ComL DNA uptake lipoprotein [General function pred	91.07
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	91.0
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	91.0
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	90.64
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	90.59
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	89.8
PRK14574	822	hmsH outer membrane protein; Provisional	89.65
KOG4648	536	consensus Uncharacterized conserved protein, conta	89.58
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	88.82
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	88.68
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	88.43
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	87.92
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	87.58
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	87.38
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	87.22
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	86.75
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	86.66
COG4700	251	Uncharacterized protein conserved in bacteria cont	86.5
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	86.04
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	85.79
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	85.78
PF03704	146	BTAD: Bacterial transcriptional activator domain;	85.78
PF03745	62	DUF309: Domain of unknown function (DUF309); Inter	85.55
PRK14574	822	hmsH outer membrane protein; Provisional	84.91
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	84.75
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	84.36
KOG2076	895	consensus RNA polymerase III transcription factor	84.35
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	83.95
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	82.15
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	82.13
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	81.5
PF13428	44	TPR_14: Tetratricopeptide repeat	81.49
COG0457	291	NrfG FOG: TPR repeat [General function prediction	80.91
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	80.66
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	80.17

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.15  E-value=8.3e-06  Score=60.48  Aligned_cols=62  Identities=19%  Similarity=0.161  Sum_probs=55.3

Q ss_pred             HHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      |..|..+++.|+|.+|+..|+.++..-|.    ..++.++|+.||...|+.++|+.+|+++. ..|+
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPD----NPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTT----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            67899999999999999999999988854    78999999999999999999999999984 5664

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.02  E-value=2.1e-05  Score=58.33  Aligned_cols=60  Identities=23%  Similarity=0.299  Sum_probs=52.3

Q ss_pred             HHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC-HHHH
Q 013807          290 LMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN-ALVS  353 (436)
Q Consensus       290 AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~-~eVr  353 (436)
                      ||+.|+|.+|+.+|+++++.-|.    ..++.+.|+.||-..|+.++|+.+++++. .+|+ +.+.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~   62 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPD----NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ   62 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTT----SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            68999999999999999999876    56788899999999999999999999996 7888 4444

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.88  E-value=0.00012  Score=57.55  Aligned_cols=77  Identities=17%  Similarity=0.163  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHH
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRAR  357 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAk  357 (436)
                      .+..+..|..++..|+|.+|+.+|+.++..-+... .-..+.+.++.||...|+.++|+.+|+++. .+|+.....+|.
T Consensus        39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  116 (119)
T TIGR02795        39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP-KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ  116 (119)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC-cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence            34466777778888888888888887776654332 224556667777777888888888887774 577777766663

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.83  E-value=0.00011  Score=67.15  Aligned_cols=77  Identities=21%  Similarity=0.254  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHH
Q 013807          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRA  356 (436)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQA  356 (436)
                      ..+..|+.|..+|+.|+|.+|+..|+++.+.-| .|.+...+++|++.||-..|+.++|+..|+++. .||+..-...|
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P-~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A   81 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYP-NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA   81 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T-TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence            356799999999999999999999999998865 488999999999999999999999999999974 79987644333

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.81  E-value=0.00018  Score=56.55  Aligned_cols=69  Identities=13%  Similarity=0.106  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      .+..|..|..++..|+|.+|+.+|++++..-+ .+...-.+.++++.||...|+.++|+.+|+++. .+|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~   71 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYP-KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK   71 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC
Confidence            35679999999999999999999999987754 334456889999999999999999999999986 4676

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.64  E-value=0.00016  Score=53.82  Aligned_cols=62  Identities=21%  Similarity=0.206  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC-ChHHHHHHHHHHh
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH-RPKEARIMYEKLQ  345 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G-R~~EAiaLYkkL~  345 (436)
                      ++..+..|..++..|+|.+|+.+|++|++.-+.    ...+..+++.||...| +.++|+..|++..
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~----~~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN----NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT----HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            456788999999999999999999999998754    4568899999999999 7999999999864

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.62  E-value=0.00036  Score=67.71  Aligned_cols=102  Identities=17%  Similarity=0.216  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChH
Q 013807          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK  335 (436)
Q Consensus       256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~  335 (436)
                      +..+.+.+|++=+  ...|.-.......|..|..++..|+|.+|+.+|+++++.-+ .|..-.++-+.++.||...|+.+
T Consensus       158 ~y~~Ai~af~~fl--~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-~s~~~~dAl~klg~~~~~~g~~~  234 (263)
T PRK10803        158 RQDDAIVAFQNFV--KKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP-KSPKAADAMFKVGVIMQDKGDTA  234 (263)
T ss_pred             CHHHHHHHHHHHH--HHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhHHHHHHHHHHHHcCCHH
Confidence            4444555544333  22344443345579999999999999999999999998875 66777889999999999999999


Q ss_pred             HHHHHHHHHh-cCCCHHHHHHHHHHH
Q 013807          336 EARIMYEKLQ-SHPNALVSKRARQFM  360 (436)
Q Consensus       336 EAiaLYkkL~-sHP~~eVrKQAkrLl  360 (436)
                      +|+.+|+++. .||+..-.++|++.|
T Consensus       235 ~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        235 KAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             HHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            9999999996 799999999998876

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.48  E-value=0.00048  Score=62.57  Aligned_cols=71  Identities=18%  Similarity=0.256  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL  351 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e  351 (436)
                      .++.|+.|+.+|+.|+|.+|+..||.+.+.-|+ ++..-.++|||+-||=..++.++|++-|++.. -||.-.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~-g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp   81 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPF-GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP   81 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence            356899999999999999999999999998876 57888999999999999999999999999996 477544

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.40  E-value=0.00063  Score=51.97  Aligned_cols=65  Identities=22%  Similarity=0.208  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch---hHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~GR~~EAiaLYkkL  344 (436)
                      +......|..++..|+|.+|+.+|++|++....-..-+   +.+-..++.||...|+.++|+.+|++.
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34456789999999999999999999998842221122   556667999999999999999999985

...

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.32  E-value=0.0041  Score=53.46  Aligned_cols=73  Identities=19%  Similarity=0.130  Sum_probs=60.7

Q ss_pred             hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 013807          276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPN  349 (436)
Q Consensus       276 ~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~  349 (436)
                      ........|..++.+|+.|+|.+|+..|+++++.. ....+.-.+.+.||.||-..|+.++|+.+++++..++.
T Consensus        44 s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~  116 (145)
T PF09976_consen   44 SPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAF  116 (145)
T ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch
Confidence            33445667888999999999999999999999877 55588889999999999999999999999988654443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.30  E-value=0.00096  Score=63.55  Aligned_cols=72  Identities=11%  Similarity=0.068  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013807          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL  351 (436)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e  351 (436)
                      ..++.|..|..+|+.|+|.+|+..||++.+.-+ .|.+.-.+.+|++.||=..++.++|+..|++.. .||+-.
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~  103 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP  103 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence            455689999999999999999999999998666 558888899999999999999999999999995 677764

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.24  E-value=0.0015  Score=57.01  Aligned_cols=74  Identities=19%  Similarity=0.209  Sum_probs=51.7

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHH
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRAR  357 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAk  357 (436)
                      .|+.+..+...|+..+|+++|++|+.. .......-.+.|+|+.+|..+||.++|+++-++.. .||..+.....+
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~   78 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALR   78 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence            566777777778888888888887774 23333344577778888888888888888887775 567766655444

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.21  E-value=0.0028  Score=52.11  Aligned_cols=77  Identities=14%  Similarity=-0.015  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH----HHHH
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV----SKRA  356 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV----rKQA  356 (436)
                      ..+..|..++..|++.+|+..|+.+++.-+.    ...+...+++||...|+.++|+..|++.. .+|+...    .+++
T Consensus        53 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  128 (135)
T TIGR02552        53 YWLGLAACCQMLKEYEEAIDAYALAAALDPD----DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERA  128 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence            3456688888889999999999988776543    35666888999999999999999998885 5666544    5566


Q ss_pred             HHHHHH
Q 013807          357 RQFMFS  362 (436)
Q Consensus       357 krLlyi  362 (436)
                      ..+++.
T Consensus       129 ~~~~~~  134 (135)
T TIGR02552       129 EAMLES  134 (135)
T ss_pred             HHHHhc
Confidence            666654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.18  E-value=0.0014  Score=59.09  Aligned_cols=77  Identities=21%  Similarity=0.248  Sum_probs=64.3

Q ss_pred             cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013807          274 PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL  351 (436)
Q Consensus       274 p~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e  351 (436)
                      |.-....+..|..|..++..|+|.+|+..|++++..-+ .+...-.+.+.++.||.+.|+.++|+..|+++. .||+..
T Consensus        27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~  104 (235)
T TIGR03302        27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP  104 (235)
T ss_pred             CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence            33445666789999999999999999999999988765 334566788999999999999999999999995 677544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.13  E-value=0.0027  Score=47.66  Aligned_cols=70  Identities=20%  Similarity=0.153  Sum_probs=59.1

Q ss_pred             HHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHH
Q 013807          287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFM  360 (436)
Q Consensus       287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLl  360 (436)
                      ...++.+++|..|+..++.++..-|..    -.+.+.+++||-..|+.++|+..+++.. .+|+.....+++++|
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l   72 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDD----PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML   72 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCccc----chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence            356899999999999999999997663    3344558999999999999999999985 799888888887765

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.09  E-value=0.0053  Score=53.49  Aligned_cols=99  Identities=14%  Similarity=0.143  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC
Q 013807          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  332 (436)
Q Consensus       253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  332 (436)
                      ...+..+.+..|+.-.  .++|..-   +..+..|..++..|+|.+|+..|+.|+.+-+.    ...+...|+.||...|
T Consensus        36 ~~g~~~~A~~~~~~al--~~~P~~~---~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~----~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         36 QEGDYSRAVIDFSWLV--MAQPWSW---RAHIALAGTWMMLKEYTTAINFYGHALMLDAS----HPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HcCCHHHHHHHHHHHH--HcCCCcH---HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHcC
Confidence            3444555666666543  5555543   33577899999999999999999999986543    4677888999999999


Q ss_pred             ChHHHHHHHHHHh-cCCCH----HHHHHHHHHH
Q 013807          333 RPKEARIMYEKLQ-SHPNA----LVSKRARQFM  360 (436)
Q Consensus       333 R~~EAiaLYkkL~-sHP~~----eVrKQAkrLl  360 (436)
                      |.++|+..|++.. ..|+-    .++.++++++
T Consensus       107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359        107 EPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            9999999999975 45554    5666666654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.03  E-value=0.0023  Score=44.82  Aligned_cols=64  Identities=27%  Similarity=0.258  Sum_probs=50.3

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (436)
                      .+..|..++..|++.+|+..|+.++...+...    .+.++++.||-..|+.++|+.+|+++. .+|..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   67 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA----DAYYNLAAAYYKLGKYEEALEDYEKALELDPDN   67 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            46678888888999999999998887765443    677888888888899999999988874 44443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.03  E-value=0.007  Score=54.55  Aligned_cols=65  Identities=15%  Similarity=0.024  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP  348 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP  348 (436)
                      .+..|..++.+|+|.+|+..|+.+++..+. +...-++.+.++.+|..+|+.++|+.++++|. +||
T Consensus       169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       169 ELYVARFYLKRGAYVAAINRFETVVENYPD-TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            357789999999999999999999988765 34556888999999999999999999999996 677

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.91  E-value=0.01  Score=41.50  Aligned_cols=64  Identities=25%  Similarity=0.211  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP  348 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP  348 (436)
                      ...+..|..++..|++.+|+.+|+.++...+...    .+...++.+|...|+.++|+..++++. .+|
T Consensus        35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA----KAYYNLGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch----hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence            4467789999999999999999999998765544    777889999999999999999999985 455

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.76  E-value=0.0027  Score=49.66  Aligned_cols=50  Identities=20%  Similarity=0.293  Sum_probs=27.4

Q ss_pred             CCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807          293 SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       293 rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (436)
                      .|+|+.|+.+||++.+.-+.++  -..+.+++|.||=..|+.++|+.+++++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~~   51 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQKL   51 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHCH
T ss_pred             CccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            4556666666666665555433  3334444566666666666666666553

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.66  E-value=0.015  Score=50.91  Aligned_cols=85  Identities=18%  Similarity=0.271  Sum_probs=68.0

Q ss_pred             HHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHH
Q 013807          258 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA  337 (436)
Q Consensus       258 ke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA  337 (436)
                      .+.+.-|++-.-..++..  ...+..+..|..+..-|+|.+|+..|++++...|. ..+.+.++..+|+|+-+.||++||
T Consensus        18 ~~Ai~~Y~~Al~~gL~~~--~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~-~~~~~~l~~f~Al~L~~~gr~~eA   94 (120)
T PF12688_consen   18 EEAIPLYRRALAAGLSGA--DRRRALIQLASTLRNLGRYDEALALLEEALEEFPD-DELNAALRVFLALALYNLGRPKEA   94 (120)
T ss_pred             HHHHHHHHHHHHcCCCch--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ccccHHHHHHHHHHHHHCCCHHHH
Confidence            455666776655455544  33457889999999999999999999999886643 457888999999999999999999


Q ss_pred             HHHHHHHh
Q 013807          338 RIMYEKLQ  345 (436)
Q Consensus       338 iaLYkkL~  345 (436)
                      +.+.-.+.
T Consensus        95 l~~~l~~l  102 (120)
T PF12688_consen   95 LEWLLEAL  102 (120)
T ss_pred             HHHHHHHH
Confidence            99987653

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.65  E-value=0.0064  Score=66.17  Aligned_cols=82  Identities=20%  Similarity=0.190  Sum_probs=64.6

Q ss_pred             CcCCcchH-HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch-----------hHHHHHHHHHHHhcCChHHH
Q 013807          270 LNVDPKLK-SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-----------GLAALQWSICQDSLHRPKEA  337 (436)
Q Consensus       270 l~Vdp~~k-~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG-----------GeaqLwLAiAydA~GR~~EA  337 (436)
                      +..-|++- ..-+..|..+-.+.++|+|.+|++.||+|+..|-..-..+           --+.+|||-+|+-+|+++||
T Consensus       164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea  243 (652)
T KOG2376|consen  164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA  243 (652)
T ss_pred             HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            34445543 4677899999999999999999999999977665444333           25678999999999999999


Q ss_pred             HHHHHHHhcCCCHH
Q 013807          338 RIMYEKLQSHPNAL  351 (436)
Q Consensus       338 iaLYkkL~sHP~~e  351 (436)
                      .++|..+.+|-..+
T Consensus       244 ~~iy~~~i~~~~~D  257 (652)
T KOG2376|consen  244 SSIYVDIIKRNPAD  257 (652)
T ss_pred             HHHHHHHHHhcCCC
Confidence            99999997544433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.62  E-value=0.014  Score=58.36  Aligned_cols=105  Identities=16%  Similarity=0.159  Sum_probs=81.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHH
Q 013807          246 TAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWS  325 (436)
Q Consensus       246 teEEkaaR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLA  325 (436)
                      .+-..+-+..+..+.+..|++-+  .++|.   .....+..|..++..|+|.+|+..|++|+.+-+.    ...+.+.++
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al--~~~P~---~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~----~~~a~~~lg   77 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAI--DLDPN---NAELYADRAQANIKLGNFTEAVADANKAIELDPS----LAKAYLRKG   77 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH--HhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----CHHHHHHHH
Confidence            44455777888889999998776  44553   2566788899999999999999999999998653    467889999


Q ss_pred             HHHHhcCChHHHHHHHHHHh-cCCC-HHHHHHHHHH
Q 013807          326 ICQDSLHRPKEARIMYEKLQ-SHPN-ALVSKRARQF  359 (436)
Q Consensus       326 iAydA~GR~~EAiaLYkkL~-sHP~-~eVrKQAkrL  359 (436)
                      .||..+|+.++|+..|+++. .+|+ ..+...-+++
T Consensus        78 ~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         78 TACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999985 5665 4444443333

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.58  E-value=0.011  Score=59.03  Aligned_cols=64  Identities=11%  Similarity=0.007  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP  348 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP  348 (436)
                      .+.+..|..+|..|+|.+|+++|++|+.+-+..    ..+.+.++.||..+|+.++|+..|+++. ..|
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~----~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P   67 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN----AELYADRAQANIKLGNFTEAVADANKAIELDP   67 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            457788999999999999999999999987765    3567889999999999999999999996 455

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.57  E-value=0.047  Score=46.40  Aligned_cols=106  Identities=17%  Similarity=0.218  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHHhhcCCcCCc-----chHHHHHHHH-----HHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHH
Q 013807          251 AAKEERTRQLLAAYKKSVGLNVDP-----KLKSECEKAL-----KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLA  320 (436)
Q Consensus       251 aaR~~rtke~LaaYrk~~Gl~Vdp-----~~k~e~eea~-----~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGea  320 (436)
                      ..+....++.|+-|+...=-+++.     .....+++.+     +.+..+.+.|++.+|+..++.++..=|.+    -.+
T Consensus        23 ~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~----E~~   98 (146)
T PF03704_consen   23 EEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYD----EEA   98 (146)
T ss_dssp             HHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-----HHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC----HHH
Confidence            445567778888888776555554     1223333322     33667788999999999999999998764    456


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHh--------cCCCHHHHHHHHHHH
Q 013807          321 ALQWSICQDSLHRPKEARIMYEKLQ--------SHPNALVSKRARQFM  360 (436)
Q Consensus       321 qLwLAiAydA~GR~~EAiaLYkkL~--------sHP~~eVrKQAkrLl  360 (436)
                      ..+|..||-+.||+.+|+..|++++        ..|+++++.-.++||
T Consensus        99 ~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~il  146 (146)
T PF03704_consen   99 YRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYREIL  146 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHhC
Confidence            6778899999999999999999884        358888888777764

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=96.52  E-value=0.0059  Score=53.19  Aligned_cols=63  Identities=11%  Similarity=0.016  Sum_probs=54.5

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      .+..|..++..|+|.+|+.+|..++..=+..    ..+.+.++.|+...||.++|+..|++.. -.|.
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~   90 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWS----WRAHIALAGTWMMLKEYTTAINFYGHALMLDAS   90 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            4567999999999999999999998876554    5677889999999999999999999996 4553

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.45  E-value=0.02  Score=49.28  Aligned_cols=82  Identities=26%  Similarity=0.259  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCCh
Q 013807          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  334 (436)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  334 (436)
                      ..+.+.+..|++=..-..|+.++..+  .+..+..++..|+|.+|+..|+.+     ....+.+.+...+..+|-+.|+.
T Consensus        62 g~~~~A~~~l~~~~~~~~d~~l~~~a--~l~LA~~~~~~~~~d~Al~~L~~~-----~~~~~~~~~~~~~Gdi~~~~g~~  134 (145)
T PF09976_consen   62 GDYDEAKAALEKALANAPDPELKPLA--RLRLARILLQQGQYDEALATLQQI-----PDEAFKALAAELLGDIYLAQGDY  134 (145)
T ss_pred             CCHHHHHHHHHHHHhhCCCHHHHHHH--HHHHHHHHHHcCCHHHHHHHHHhc-----cCcchHHHHHHHHHHHHHHCCCH
Confidence            44555566666555545666666555  677899999999999999999772     34557788999999999999999


Q ss_pred             HHHHHHHHH
Q 013807          335 KEARIMYEK  343 (436)
Q Consensus       335 ~EAiaLYkk  343 (436)
                      ++|+..|++
T Consensus       135 ~~A~~~y~~  143 (145)
T PF09976_consen  135 DEARAAYQK  143 (145)
T ss_pred             HHHHHHHHH
Confidence            999999986

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.44  E-value=0.0062  Score=47.64  Aligned_cols=60  Identities=20%  Similarity=0.149  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHH
Q 013807          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEK  343 (436)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkk  343 (436)
                      ...-.|..|..+|..|+|.+|++.|++  ..+..   -.-.+.+.+|.||-.+|+.+|||..+++
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~--~~~~~---~~~~~~~l~a~~~~~l~~y~eAi~~l~~   83 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK--LKLDP---SNPDIHYLLARCLLKLGKYEEAIKALEK   83 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC--HTHHH---CHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH--hCCCC---CCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            334567789999999999999999988  22222   2256777789999999999999999976

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.39  E-value=0.023  Score=49.63  Aligned_cols=74  Identities=19%  Similarity=0.109  Sum_probs=60.1

Q ss_pred             hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807          276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       276 ~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (436)
                      ...++...+..|..++..|+|.+|+.+|++|+...+. +..-..+...+++||...|++++|+..|++.. .+|..
T Consensus        31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~  105 (168)
T CHL00033         31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL  105 (168)
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence            4456777889999999999999999999999987542 22234577789999999999999999999975 45654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.32  E-value=0.059  Score=57.16  Aligned_cols=67  Identities=22%  Similarity=0.230  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSH  347 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sH  347 (436)
                      ++..+..|..++..|+|.+|+..|++|+++-|..-. .-.+..+++.||-.+|+.+||++.|++-...
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae-A~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE-AQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            344788899999999999999999999999754311 1134789999999999999999999998653

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.32  E-value=0.04  Score=52.19  Aligned_cols=65  Identities=17%  Similarity=0.109  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      .-....|..+++.|++.+|+.+|++++...+....+.....+.++.+|-..|+.++|+.+|+++.
T Consensus       149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~  213 (355)
T cd05804         149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI  213 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            34566799999999999999999999998876556656666779999999999999999999974

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.23  E-value=0.038  Score=56.00  Aligned_cols=81  Identities=20%  Similarity=0.178  Sum_probs=62.1

Q ss_pred             chHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch------------------------------hHHHHHH
Q 013807          275 KLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------------------------------GLAALQW  324 (436)
Q Consensus       275 ~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG------------------------------GeaqLwL  324 (436)
                      +.++.+++.=.+|..+|+.++|++||..|.+|+.+.|.+-.+.                              -++-.-|
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL  155 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL  155 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence            4778888888899999999999999999999999998775443                              1333446


Q ss_pred             HHHHHhcCChHHHHHHHHHH-hcCCCHHHHHH
Q 013807          325 SICQDSLHRPKEARIMYEKL-QSHPNALVSKR  355 (436)
Q Consensus       325 AiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQ  355 (436)
                      -+||=+.|++++|+.-|++- .--|+-++=|.
T Consensus       156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~  187 (304)
T KOG0553|consen  156 GLAYLALGKYEEAIEAYKKALELDPDNESYKS  187 (304)
T ss_pred             HHHHHccCcHHHHHHHHHhhhccCCCcHHHHH
Confidence            67777788888888777774 46777765554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.19  E-value=0.0059  Score=39.47  Aligned_cols=31  Identities=23%  Similarity=0.251  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          319 LAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       319 eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ++.++++.||...|+.++|+..|++|. .||+
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            478899999999999999999999996 7886

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.16  E-value=0.061  Score=47.39  Aligned_cols=72  Identities=21%  Similarity=0.158  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (436)
                      ..+...+..|..++..|+|.+|+.+|++|++.-+... --+.+...++.||...|+.++|+..|++.. .||+.
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  105 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN-DRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ  105 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            5556678999999999999999999999987654321 135688889999999999999999999985 57754

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=96.16  E-value=0.046  Score=44.90  Aligned_cols=72  Identities=19%  Similarity=0.243  Sum_probs=59.3

Q ss_pred             cCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          271 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       271 ~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      .++|+..   ...+..|..++..|+|.+|+..|+++.+.-+..    ..+...++.||-..|++++|+.+|+++. .+|.
T Consensus        11 ~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552        11 GLDSEQL---EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN----SRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             cCChhhH---HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            4555543   447889999999999999999999998876543    4677789999999999999999999995 5664

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.15  E-value=0.029  Score=54.68  Aligned_cols=75  Identities=12%  Similarity=0.148  Sum_probs=63.1

Q ss_pred             HHHHHHHHHH-HhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHH
Q 013807          281 EKALKDGDSL-MDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRA  356 (436)
Q Consensus       281 eea~~~Gk~A-merGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQA  356 (436)
                      +..|..+..+ +..|+|.+|+..|++.++.-| +|.+-..+.+||+.+|-..|+.++|+..|+++. .||.-.-.-.|
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP-~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA  219 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYP-DSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA  219 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence            4568888876 778999999999999998886 467778999999999999999999999999996 68875443333

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.09  E-value=0.016  Score=63.64  Aligned_cols=70  Identities=17%  Similarity=0.202  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch------------------------------hHHHHHHHHHHH
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------------------------------GLAALQWSICQD  329 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG------------------------------GeaqLwLAiAyd  329 (436)
                      .+..+-.|..++.+|.|.+|..+|+.++++.|-.....                              ..+++.+|+|++
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~  165 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD  165 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            33455567777778888888888777777776654322                              578889999999


Q ss_pred             hcCChHHHHHHHHHHh-cCCC
Q 013807          330 SLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       330 A~GR~~EAiaLYkkL~-sHP~  349 (436)
                      .+|+++||+++|+++. .||+
T Consensus       166 ~~g~~~~A~~~y~~~~~~~p~  186 (694)
T PRK15179        166 EIGQSEQADACFERLSRQHPE  186 (694)
T ss_pred             HhcchHHHHHHHHHHHhcCCC
Confidence            9999999999999997 6775

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=96.08  E-value=0.02  Score=60.01  Aligned_cols=59  Identities=8%  Similarity=-0.100  Sum_probs=33.0

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      -+..|..++..|+|.+|++.+++|+++-+..    -.+...++.||..+|+.++|+.-|.++.
T Consensus       163 ~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~----~~a~~~~a~a~~~lg~~~eA~~~~~~~~  221 (615)
T TIGR00990       163 YSNRAACHNALGDWEKVVEDTTAALELDPDY----SKALNRRANAYDGLGKYADALLDLTASC  221 (615)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444555566666666666666666554332    2445555666666666666666555543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=96.05  E-value=0.065  Score=49.47  Aligned_cols=82  Identities=12%  Similarity=0.078  Sum_probs=47.6

Q ss_pred             HHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHH-HhcCC--h
Q 013807          258 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQ-DSLHR--P  334 (436)
Q Consensus       258 ke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAy-dA~GR--~  334 (436)
                      .+.+..|+...  ..+|..-+   .-+..|..++..|+|.+|+..|++|+.+-+.+.    .+.+.+|+|+ ...|+  .
T Consensus        56 ~~~i~~l~~~L--~~~P~~~~---~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~----~~~~~lA~aL~~~~g~~~~  126 (198)
T PRK10370         56 EAQLQALQDKI--RANPQNSE---QWALLGEYYLWRNDYDNALLAYRQALQLRGENA----ELYAALATVLYYQAGQHMT  126 (198)
T ss_pred             HHHHHHHHHHH--HHCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcCCCCc
Confidence            45555555444  33344332   355567788888888888888888877766543    3344555553 55555  3


Q ss_pred             HHHHHHHHHHh-cCC
Q 013807          335 KEARIMYEKLQ-SHP  348 (436)
Q Consensus       335 ~EAiaLYkkL~-sHP  348 (436)
                      ++|+.++++.. .+|
T Consensus       127 ~~A~~~l~~al~~dP  141 (198)
T PRK10370        127 PQTREMIDKALALDA  141 (198)
T ss_pred             HHHHHHHHHHHHhCC
Confidence            56666665553 344

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=95.99  E-value=0.088  Score=44.37  Aligned_cols=84  Identities=13%  Similarity=0.101  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChH
Q 013807          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK  335 (436)
Q Consensus       256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~  335 (436)
                      +..+.+..|.+-.  ..+|.   .....+..|..++..|++.+|+.+|+++++.-+.    .+.+...++.+|...|+.+
T Consensus        46 ~~~~A~~~~~~~l--~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~g~~~  116 (234)
T TIGR02521        46 DLEVAKENLDKAL--EHDPD---DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN----NGDVLNNYGTFLCQQGKYE  116 (234)
T ss_pred             CHHHHHHHHHHHH--HhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcccHH
Confidence            4445555555443  22332   1344455688888888888888888888876543    2456777888888888888


Q ss_pred             HHHHHHHHHhcCC
Q 013807          336 EARIMYEKLQSHP  348 (436)
Q Consensus       336 EAiaLYkkL~sHP  348 (436)
                      +|+.+|++...++
T Consensus       117 ~A~~~~~~~~~~~  129 (234)
T TIGR02521       117 QAMQQFEQAIEDP  129 (234)
T ss_pred             HHHHHHHHHHhcc
Confidence            8888888886543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=95.98  E-value=0.044  Score=60.34  Aligned_cols=101  Identities=11%  Similarity=0.038  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc
Q 013807          252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  331 (436)
Q Consensus       252 aR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  331 (436)
                      .|..+..+.|..++.-.  ..+|..   ....+..|..+.+-|+|.+|++.|++++..-+    ---.+.++|+.+|.-.
T Consensus       131 ~~~~~~eeA~~~~~~~l--~~~p~~---~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p----~~~~~~~~~a~~l~~~  201 (694)
T PRK15179        131 KRQQGIEAGRAEIELYF--SGGSSS---AREILLEAKSWDEIGQSEQADACFERLSRQHP----EFENGYVGWAQSLTRR  201 (694)
T ss_pred             HHhccHHHHHHHHHHHh--hcCCCC---HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHc
Confidence            45566667777776554  333432   33467889999999999999999999998322    2237899999999999


Q ss_pred             CChHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 013807          332 HRPKEARIMYEKLQSHPNALVSKRARQFMF  361 (436)
Q Consensus       332 GR~~EAiaLYkkL~sHP~~eVrKQAkrLly  361 (436)
                      |+.++|.+.|++..-+-...++|-++.+.-
T Consensus       202 G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  231 (694)
T PRK15179        202 GALWRARDVLQAGLDAIGDGARKLTRRLVD  231 (694)
T ss_pred             CCHHHHHHHHHHHHHhhCcchHHHHHHHHH
Confidence            999999999999987666777776766543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=95.62  E-value=0.1  Score=52.98  Aligned_cols=86  Identities=16%  Similarity=0.148  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChH
Q 013807          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK  335 (436)
Q Consensus       256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~  335 (436)
                      +..+.+..|++-..+.-++      ...+..+..+...|++.+|+..|+++++..+..    -.+...++.+|...|+.+
T Consensus       718 ~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~g~~~  787 (899)
T TIGR02917       718 DYPAAIQAYRKALKRAPSS------QNAIKLHRALLASGNTAEAVKTLEAWLKTHPND----AVLRTALAELYLAQKDYD  787 (899)
T ss_pred             CHHHHHHHHHHHHhhCCCc------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCcCHH
Confidence            4445555555544333322      234556777778888888888888887766543    367778888888888888


Q ss_pred             HHHHHHHHHh-cCCCHH
Q 013807          336 EARIMYEKLQ-SHPNAL  351 (436)
Q Consensus       336 EAiaLYkkL~-sHP~~e  351 (436)
                      +|+.+|+++. .+|+..
T Consensus       788 ~A~~~~~~~~~~~p~~~  804 (899)
T TIGR02917       788 KAIKHYRTVVKKAPDNA  804 (899)
T ss_pred             HHHHHHHHHHHhCCCCH
Confidence            8888888874 677643

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=95.59  E-value=0.12  Score=43.54  Aligned_cols=62  Identities=15%  Similarity=0.131  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS  346 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s  346 (436)
                      ...+..|..++..|++.+|+.+|++++...+..    ..+.+.++.+|...|+.++|+.++++...
T Consensus       136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~  197 (234)
T TIGR02521       136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQR----PESLLELAELYYLRGQYKDARAYLERYQQ  197 (234)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345667888999999999999999998876542    45677888999999999999999998764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=95.52  E-value=0.04  Score=51.06  Aligned_cols=65  Identities=11%  Similarity=0.107  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      .+..+..|.-|-.+|+.|+|.+|...|+..+..=+-+.+    --+-|++|+++.|+.++||..|.+..
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~----y~~gLG~~~Q~~g~~~~AI~aY~~A~   96 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD----YWFRLGECCQAQKHWGEAIYAYGRAA   96 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            455667999999999999999999999998776655443    35679999999999999999999874

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=95.50  E-value=0.071  Score=51.01  Aligned_cols=67  Identities=13%  Similarity=0.087  Sum_probs=37.1

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc-CCC
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS-HPN  349 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s-HP~  349 (436)
                      .+..|..++.+|+|.+|+..|++++..-......-..+...|+.+|...|+.++|+.+|+++.. +|.
T Consensus        72 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~  139 (389)
T PRK11788         72 HLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDF  139 (389)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcc
Confidence            3445666666666666666666665532111111234455566666666666666666666653 443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=95.45  E-value=0.062  Score=56.39  Aligned_cols=63  Identities=11%  Similarity=0.071  Sum_probs=42.8

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      .+..|..++..|+|.+|+..|++|+++-+.+    ..+.++|+.+|...|+.++|+.+|++.. .+|+
T Consensus       402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~  465 (615)
T TIGR00990       402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF----IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE  465 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCccC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            4455777777777777777777777765533    2445667777777777777777777763 4554

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=95.43  E-value=0.31  Score=46.64  Aligned_cols=142  Identities=13%  Similarity=0.079  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCC-
Q 013807          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR-  333 (436)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR-  333 (436)
                      .+..+.+..|++=.  +..|......+..|..|..+|..|+|.+|+.+|+..+..-|..... ..|...+++|+..+++ 
T Consensus        46 g~y~~Ai~~f~~l~--~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~~~~~~  122 (243)
T PRK10866         46 GNWKQAITQLEALD--NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNMALDDS  122 (243)
T ss_pred             CCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhhhcchh
Confidence            44445555555443  3456665566668999999999999999999999999988777655 7888899999766652 


Q ss_pred             -----------------hHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHH---hhhhhhhcccCCCCcchHHHHHHhhccc
Q 013807          334 -----------------PKEARIMYEKLQ-SHPNALVSKRARQFMFSFQ---AMEMMKVRSSSDKNTDYRNFFEAFVEDK  392 (436)
Q Consensus       334 -----------------~~EAiaLYkkL~-sHP~~eVrKQAkrLlyiLE---Ap~llKv~~~~~~~t~Yd~Yf~~f~~~k  392 (436)
                                       ..+|+..+++|. .||+-+-...|++.|--+.   |-.=+-|...|.+...|..=...|..==
T Consensus       123 ~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~  202 (243)
T PRK10866        123 ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQML  202 (243)
T ss_pred             hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence                             368999999996 8999999999987665554   2222345555655555643222222223


Q ss_pred             ccccCcc
Q 013807          393 TNYPLQE  399 (436)
Q Consensus       393 t~y~~~e  399 (436)
                      .+|+.+.
T Consensus       203 ~~Yp~t~  209 (243)
T PRK10866        203 RDYPDTQ  209 (243)
T ss_pred             HHCCCCc
Confidence            3566554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=95.29  E-value=0.056  Score=51.82  Aligned_cols=81  Identities=17%  Similarity=0.217  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHhC-CchhhhhhHHHHHHhhccc--CccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc--CCCHHHHH
Q 013807          280 CEKALKDGDSLMDS-GKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLHRPKEARIMYEKLQS--HPNALVSK  354 (436)
Q Consensus       280 ~eea~~~Gk~Amer-GkYr~AV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s--HP~~eVrK  354 (436)
                      ++...+.|..+.+. |+|.+|+++|++|++....  .+.....+.+++|.+|-.+|+.++|+.+|+++..  .-+...+=
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~  193 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY  193 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence            33444557777777 8999999999999988643  4455678888999999999999999999999963  23333455


Q ss_pred             HHHHHH
Q 013807          355 RARQFM  360 (436)
Q Consensus       355 QAkrLl  360 (436)
                      .++++.
T Consensus       194 ~~~~~~  199 (282)
T PF14938_consen  194 SAKEYF  199 (282)
T ss_dssp             HHHHHH
T ss_pred             hHHHHH
Confidence            666644

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=95.26  E-value=0.31  Score=46.67  Aligned_cols=63  Identities=13%  Similarity=0.042  Sum_probs=42.1

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc-CCC
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS-HPN  349 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s-HP~  349 (436)
                      .+..|..+++.|++.+|+.+|++++...+.    ...+.+.++.+|...|+.++|+.+|+++.. +|+
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  246 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALAADPQ----CVRASILLGDLALAQGDYAAAIEALERVEEQDPE  246 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhHCcC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence            345666777777777777777777765432    245666677777777777777777777653 443

>PRK11189 lipoprotein NlpI; Provisional

Probab=95.03  E-value=0.17  Score=48.88  Aligned_cols=84  Identities=15%  Similarity=0.112  Sum_probs=63.8

Q ss_pred             HHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHH
Q 013807          259 QLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEAR  338 (436)
Q Consensus       259 e~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAi  338 (436)
                      +.+..|.+-.  .++|..   ...-+..|..++..|+|.+|++.|++|+++-|..    ..+.+.+++||-..||.++|+
T Consensus        82 ~A~~~~~~Al--~l~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~g~~~eA~  152 (296)
T PRK11189         82 LARNDFSQAL--ALRPDM---ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----NYAYLNRGIALYYGGRYELAQ  152 (296)
T ss_pred             HHHHHHHHHH--HcCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHH
Confidence            3344454443  344543   2345678999999999999999999999876543    567888999999999999999


Q ss_pred             HHHHHHh-cCCCHH
Q 013807          339 IMYEKLQ-SHPNAL  351 (436)
Q Consensus       339 aLYkkL~-sHP~~e  351 (436)
                      ..|++.. .+|+.-
T Consensus       153 ~~~~~al~~~P~~~  166 (296)
T PRK11189        153 DDLLAFYQDDPNDP  166 (296)
T ss_pred             HHHHHHHHhCCCCH
Confidence            9999974 688654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=95.01  E-value=0.13  Score=55.36  Aligned_cols=65  Identities=11%  Similarity=0.115  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (436)
                      ..+..|..++..|++.+|+.+|++|++.-+.    ...+..+|+.+|...|+.++|++.|+++. .||+.
T Consensus       286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~----~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~  351 (656)
T PRK15174        286 IVTLYADALIRTGQNEKAIPLLQQSLATHPD----LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT  351 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            3556699999999999999999999987544    45678889999999999999999999986 68864

>PRK12370 invasion protein regulator; Provisional

Probab=94.91  E-value=0.13  Score=53.86  Aligned_cols=61  Identities=7%  Similarity=-0.110  Sum_probs=50.6

Q ss_pred             HHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ..|..++..|++.+|+.+|++|+++-|....    +..+++.+|-..||.++|+..|++.. -+|.
T Consensus       343 ~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~----a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~  404 (553)
T PRK12370        343 LLGLINTIHSEYIVGSLLFKQANLLSPISAD----IKYYYGWNLFMAGQLEEALQTINECLKLDPT  404 (553)
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            4578888999999999999999988766543    56788999999999999999999975 5665

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=94.81  E-value=0.11  Score=52.87  Aligned_cols=61  Identities=16%  Similarity=0.065  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      ...+..|+.++..|+|.+|+..|++++..-+.    ..++...++.+|...|+.++|+..|+++.
T Consensus        23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~   83 (899)
T TIGR02917        23 ESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN----DAEARFLLGKIYLALGDYAAAEKELRKAL   83 (899)
T ss_pred             HHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34566677777777777777777777754332    44666667777777777777777777764

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=94.74  E-value=0.091  Score=52.79  Aligned_cols=58  Identities=22%  Similarity=0.184  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (436)
                      -.+..|+.++..|++.+|..+||++++.-|.     -.+.++|+.+|++.|++++|..+|++=
T Consensus       330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-----~~~~~~La~~~~~~g~~~~A~~~~~~~  387 (398)
T PRK10747        330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPD-----AYDYAWLADALDRLHKPEEAAAMRRDG  387 (398)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4677899999999999999999999987543     355689999999999999999999964

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=94.74  E-value=0.089  Score=49.26  Aligned_cols=99  Identities=19%  Similarity=0.148  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc
Q 013807          252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  331 (436)
Q Consensus       252 aR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  331 (436)
                      .+.-+..+.+..|++-+  .++|.....   ....+..+.+.|++.++.+.++......+.++.+.    ..++.||..+
T Consensus       157 ~~~G~~~~A~~~~~~al--~~~P~~~~~---~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~----~~la~~~~~l  227 (280)
T PF13429_consen  157 EQLGDPDKALRDYRKAL--ELDPDDPDA---RNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLW----DALAAAYLQL  227 (280)
T ss_dssp             HHCCHHHHHHHHHHHHH--HH-TT-HHH---HHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHC----HHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH--HcCCCCHHH---HHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHH----HHHHHHhccc
Confidence            34446667777777654  666764443   33457788999999998888888877776666654    4579999999


Q ss_pred             CChHHHHHHHHHHh-cCC-CHHHHHHHHHH
Q 013807          332 HRPKEARIMYEKLQ-SHP-NALVSKRARQF  359 (436)
Q Consensus       332 GR~~EAiaLYkkL~-sHP-~~eVrKQAkrL  359 (436)
                      |+.++|+.+|+++. .|| ++.+...=..+
T Consensus       228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~  257 (280)
T PF13429_consen  228 GRYEEALEYLEKALKLNPDDPLWLLAYADA  257 (280)
T ss_dssp             T-HHHHHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            99999999999996 477 56665543333

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=94.47  E-value=0.085  Score=39.48  Aligned_cols=41  Identities=15%  Similarity=0.152  Sum_probs=38.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 013807          321 ALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMF  361 (436)
Q Consensus       321 qLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLly  361 (436)
                      .|.||-+|-.+|+.+.|+.+-+.+..+.+...+.+|+.||=
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~~~~q~~eA~~LL~   42 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIEEGDEAQRQEARALLA   42 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            57899999999999999999999999999999999999973

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=94.44  E-value=0.27  Score=46.09  Aligned_cols=102  Identities=13%  Similarity=0.046  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc
Q 013807          252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  331 (436)
Q Consensus       252 aR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  331 (436)
                      ...+++.+.|.......      .......--+..|..+...|+..+|+..|++|+.+-|.++.    +...|+.+|-..
T Consensus       124 ~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~----~~~~l~~~li~~  193 (280)
T PF13429_consen  124 GDYDEAEELLEKLEELP------AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD----ARNALAWLLIDM  193 (280)
T ss_dssp             T-HHHHHHHHHHHHH-T---------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH----HHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHHhcc------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHC
Confidence            34455555666554322      12233444667899999999999999999999999988765    455567778889


Q ss_pred             CChHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHH
Q 013807          332 HRPKEARIMYEKLQS-H-PNALVSKRARQFMFSF  363 (436)
Q Consensus       332 GR~~EAiaLYkkL~s-H-P~~eVrKQAkrLlyiL  363 (436)
                      |+.++|+.+++.+.. . .++.+...=....+.|
T Consensus       194 ~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l  227 (280)
T PF13429_consen  194 GDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL  227 (280)
T ss_dssp             CHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence            999998888888852 2 3444444333333333

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=94.41  E-value=0.34  Score=51.61  Aligned_cols=70  Identities=16%  Similarity=0.097  Sum_probs=59.2

Q ss_pred             HHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHHHHH
Q 013807          287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQFMF  361 (436)
Q Consensus       287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkrLly  361 (436)
                      |-.+.-+|++.+|..+|++|+++-+  +   -++-+.++.+|+..||.++|++.|++- .-.|...+.-..++|.|
T Consensus       427 a~~~~~~g~~~~A~~~l~rAl~L~p--s---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~~~~~f  497 (517)
T PRK10153        427 AVQALVKGKTDEAYQAINKAIDLEM--S---WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWIENLVF  497 (517)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHHHhccc
Confidence            5556678999999999999999885  3   367888999999999999999999876 46888888888877765

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=94.34  E-value=0.3  Score=42.65  Aligned_cols=82  Identities=16%  Similarity=0.209  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHH-----
Q 013807          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQD-----  329 (436)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAyd-----  329 (436)
                      .+..+.+..|++-..+.-++.  ......+..|..+...|++.+|+.+|++|+..-+..    +.....++.+|-     
T Consensus        49 g~~~~A~~~~~~al~l~~~~~--~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~----~~~~~~la~i~~~~~~~  122 (168)
T CHL00033         49 GEYAEALQNYYEAMRLEIDPY--DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL----PQALNNMAVICHYRGEQ  122 (168)
T ss_pred             CCHHHHHHHHHHHHhccccch--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHhhHH
Confidence            345567777887776654443  233356778999999999999999999999874333    455667777777     


Q ss_pred             --hcCChHHHHHHHH
Q 013807          330 --SLHRPKEARIMYE  342 (436)
Q Consensus       330 --A~GR~~EAiaLYk  342 (436)
                        ..|+.++|+..|+
T Consensus       123 ~~~~g~~~~A~~~~~  137 (168)
T CHL00033        123 AIEQGDSEIAEAWFD  137 (168)
T ss_pred             HHHcccHHHHHHHHH
Confidence              7778775555554

>PRK12370 invasion protein regulator; Provisional

Probab=94.29  E-value=0.56  Score=49.34  Aligned_cols=84  Identities=14%  Similarity=0.044  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC
Q 013807          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  332 (436)
Q Consensus       253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  332 (436)
                      ...+..+.++.|++-.  .++|..-.   ..+..|..++..|++.+|+.+|++|+.+-|....    +.++++.++-..|
T Consensus       350 ~~g~~~~A~~~~~~Al--~l~P~~~~---a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~----~~~~~~~~~~~~g  420 (553)
T PRK12370        350 IHSEYIVGSLLFKQAN--LLSPISAD---IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA----AGITKLWITYYHT  420 (553)
T ss_pred             HccCHHHHHHHHHHHH--HhCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh----hHHHHHHHHHhcc
Confidence            4456777888888765  44555433   2466789999999999999999999888776432    2233333344467


Q ss_pred             ChHHHHHHHHHHh
Q 013807          333 RPKEARIMYEKLQ  345 (436)
Q Consensus       333 R~~EAiaLYkkL~  345 (436)
                      +.++|++.|+++.
T Consensus       421 ~~eeA~~~~~~~l  433 (553)
T PRK12370        421 GIDDAIRLGDELR  433 (553)
T ss_pred             CHHHHHHHHHHHH
Confidence            7777777777763

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.26  E-value=0.19  Score=51.08  Aligned_cols=63  Identities=21%  Similarity=0.283  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      ..++.+.+++.+++.|++.+|.+.|-.|++..+.+    +++.+-||.||-+.|+.++|.+++.+|-
T Consensus       133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~----~~~~~~la~~~l~~g~~e~A~~iL~~lP  195 (304)
T COG3118         133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN----SEAKLLLAECLLAAGDVEAAQAILAALP  195 (304)
T ss_pred             HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc----chHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence            66779999999999999999999999999999877    8899999999999999999999999984

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=93.98  E-value=0.097  Score=37.22  Aligned_cols=32  Identities=22%  Similarity=0.260  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807          319 LAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       319 eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (436)
                      ++.+.||.+|...|+.++|+.+|+++. .||+-
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~   34 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD   34 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            467889999999999999999999995 68864

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=93.97  E-value=0.41  Score=54.68  Aligned_cols=65  Identities=17%  Similarity=0.194  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (436)
                      ..+..|..++..|+|.+|+.+|++|++.-+...    .+.+.|+.+|...|+.++|+..|+++. .+|+.
T Consensus       353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~----~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~  418 (1157)
T PRK11447        353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDS----YAVLGLGDVAMARKDYAAAERYYQQALRMDPGN  418 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            345679999999999999999999999876443    577789999999999999999999975 56664

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=93.92  E-value=0.55  Score=43.10  Aligned_cols=109  Identities=16%  Similarity=0.162  Sum_probs=78.0

Q ss_pred             cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC-----------ChHHHHHHHH
Q 013807          274 PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH-----------RPKEARIMYE  342 (436)
Q Consensus       274 p~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G-----------R~~EAiaLYk  342 (436)
                      |...-.-+..|..|...+..|+|.+|+..|+..++.-|... .-..+..++++|+-...           ...+|+..++
T Consensus        36 P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~  114 (203)
T PF13525_consen   36 PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFE  114 (203)
T ss_dssp             TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHH
Confidence            33334445678999999999999999999999998776654 55789999999875443           3458999999


Q ss_pred             HHh-cCCCHHHHHHHHHHHHHHH---hhhhhhhcccCCCCcchHH
Q 013807          343 KLQ-SHPNALVSKRARQFMFSFQ---AMEMMKVRSSSDKNTDYRN  383 (436)
Q Consensus       343 kL~-sHP~~eVrKQAkrLlyiLE---Ap~llKv~~~~~~~t~Yd~  383 (436)
                      .|. ++|+-.-...|++.|--+.   |-.-+.|...|.....|..
T Consensus       115 ~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~a  159 (203)
T PF13525_consen  115 ELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKA  159 (203)
T ss_dssp             HHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHH
T ss_pred             HHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence            996 8999999999988766655   3334445555666666654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.89  E-value=0.49  Score=47.24  Aligned_cols=81  Identities=17%  Similarity=0.163  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHH
Q 013807          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRAR  357 (436)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAk  357 (436)
                      .....|=.|+..|.+|+|.+|-..|..+....+-.. =-=++-|-|++|+..+|++++|.+.|++|. +.|.-.--++|+
T Consensus       177 ~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~-KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak  255 (262)
T COG1729         177 TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP-KAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK  255 (262)
T ss_pred             cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            334455569999999999999999999988765444 345778899999999999999999999995 799999888888


Q ss_pred             HHH
Q 013807          358 QFM  360 (436)
Q Consensus       358 rLl  360 (436)
                      .-+
T Consensus       256 ~~~  258 (262)
T COG1729         256 VAL  258 (262)
T ss_pred             HHH
Confidence            654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=93.83  E-value=0.46  Score=41.94  Aligned_cols=75  Identities=16%  Similarity=0.196  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChH
Q 013807          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK  335 (436)
Q Consensus       256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~  335 (436)
                      +..+.+.-|++-+.+.-++.  ......+..|..++..|+|.+|+.+|++|+..-+..    ......++.||...|+..
T Consensus        50 ~~~~A~~~~~~al~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~  123 (172)
T PRK02603         50 EYAEALENYEEALKLEEDPN--DRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ----PSALNNIAVIYHKRGEKA  123 (172)
T ss_pred             CHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCChH
Confidence            34444555555443333322  223456788999999999999999999999986544    344566788888877743


Q ss_pred             H
Q 013807          336 E  336 (436)
Q Consensus       336 E  336 (436)
                      .
T Consensus       124 ~  124 (172)
T PRK02603        124 E  124 (172)
T ss_pred             h
Confidence            3

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=93.57  E-value=0.39  Score=54.79  Aligned_cols=64  Identities=13%  Similarity=0.119  Sum_probs=54.9

Q ss_pred             HHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013807          284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL  351 (436)
Q Consensus       284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e  351 (436)
                      ...|..++..|++.+|+..|++|+..-|..    ..+.+.|+.+|...|+.++|+++|+++. .+|+-.
T Consensus       465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~----~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~  529 (1157)
T PRK11447        465 AQQAEALENQGKWAQAAELQRQRLALDPGS----VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDP  529 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            456888999999999999999999887654    3467899999999999999999999985 588543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=93.45  E-value=0.24  Score=52.02  Aligned_cols=76  Identities=21%  Similarity=0.271  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch-----------hHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-----------GLAALQWSICQDSLHRPKEARIMYEKLQS  346 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG-----------GeaqLwLAiAydA~GR~~EAiaLYkkL~s  346 (436)
                      +.+...=..|..+|.+|+|..|...||+|+..+....-.-           =-+-+.||+||--+++..+||..|.+.-.
T Consensus       206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe  285 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE  285 (397)
T ss_pred             HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            3344444579999999999999999999988887333222           23557899999999999999999999876


Q ss_pred             CCCHHHH
Q 013807          347 HPNALVS  353 (436)
Q Consensus       347 HP~~eVr  353 (436)
                      |-..+++
T Consensus       286 ~~~~N~K  292 (397)
T KOG0543|consen  286 LDPNNVK  292 (397)
T ss_pred             cCCCchh
Confidence            6655554

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.35  E-value=0.18  Score=32.75  Aligned_cols=31  Identities=23%  Similarity=0.340  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcc
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMV  311 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~  311 (436)
                      +--+..|..+|..|+|.+|+.+|++|+.+-+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            3456778888888888888888888887654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK15331 chaperone protein SicA; Provisional

Probab=93.26  E-value=0.22  Score=46.75  Aligned_cols=64  Identities=11%  Similarity=0.154  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (436)
                      .+.-+..|..|-.+|..|+|.+|..+|.-.+-.=.-+.+    -.|-|+.|++..+++++|+.+|---
T Consensus        34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~----Y~~GLaa~~Q~~k~y~~Ai~~Y~~A   97 (165)
T PRK15331         34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD----YTMGLAAVCQLKKQFQKACDLYAVA   97 (165)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467778999999999999999999999876554444444    3566777788888777777777643

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=92.82  E-value=0.68  Score=53.13  Aligned_cols=59  Identities=15%  Similarity=0.132  Sum_probs=31.5

Q ss_pred             HHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      |..+.+.|++.+|+.+|++|++.-|..    .++...+++||...|+.++|++.|++.. -.|+
T Consensus       650 G~aL~~~G~~eeAi~~l~~AL~l~P~~----~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~  709 (987)
T PRK09782        650 GYALWDSGDIAQSREMLERAHKGLPDD----PALIRQLAYVNQRLDDMAATQHYARLVIDDIDN  709 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            444455555555555555555543322    3455566666666666666666666653 3443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=92.58  E-value=0.54  Score=51.50  Aligned_cols=66  Identities=11%  Similarity=-0.009  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (436)
                      +-.+-.+..++..|++.+|+..|++++...|.+.    .+.+.+|++|...|+.++|+.+|++.. -+|+-
T Consensus       360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~----~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~  426 (765)
T PRK10049        360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ----GLRIDYASVLQARGWPRAAENELKKAEVLEPRN  426 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence            3446678888888999999999999888877764    577888888888888888888888885 46763

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.53  E-value=0.25  Score=53.60  Aligned_cols=106  Identities=20%  Similarity=0.266  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH-hcCC-----------
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHP-----------  348 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP-----------  348 (436)
                      .+.=..|...|..|+|.+|+.+|..|+++++--+.+    --..|-||+++|..++-|..|.+- .-.|           
T Consensus       116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF----YsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~  191 (606)
T KOG0547|consen  116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF----YSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRAS  191 (606)
T ss_pred             HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh----hhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            334456999999999999999999999999874211    112566788888777777777553 2222           


Q ss_pred             -------------------------CHHHHHHHHHHHHHHHhhhhhh--hcc---c-CCCCcchHHHHHHhhcc
Q 013807          349 -------------------------NALVSKRARQFMFSFQAMEMMK--VRS---S-SDKNTDYRNFFEAFVED  391 (436)
Q Consensus       349 -------------------------~~eVrKQAkrLlyiLEAp~llK--v~~---~-~~~~t~Yd~Yf~~f~~~  391 (436)
                                               |.++--.+.|+| =.+||++.+  .+.   . +|..+.-.+||+.|..+
T Consensus       192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~L-kk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~  264 (606)
T KOG0547|consen  192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVL-KKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD  264 (606)
T ss_pred             HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHH-HHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence                                     222333333332 234554443  332   2 67899999999999986

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=92.39  E-value=0.29  Score=47.04  Aligned_cols=89  Identities=18%  Similarity=0.130  Sum_probs=65.5

Q ss_pred             HHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc--cchhHHHHHHHHHHHhc-CC
Q 013807          257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSL-HR  333 (436)
Q Consensus       257 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~-GR  333 (436)
                      ..+....|.+-.-+.........+-..|..+-..+..+++.+|+.+|++|.+..-...  ...+.+...+|..|+.. |+
T Consensus        51 ~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d  130 (282)
T PF14938_consen   51 WEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGD  130 (282)
T ss_dssp             CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--
T ss_pred             cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCC
Confidence            3455566666554444444556667788888888899999999999999988764443  34467888899999999 99


Q ss_pred             hHHHHHHHHHHh
Q 013807          334 PKEARIMYEKLQ  345 (436)
Q Consensus       334 ~~EAiaLYkkL~  345 (436)
                      .++|+..|++-.
T Consensus       131 ~e~Ai~~Y~~A~  142 (282)
T PF14938_consen  131 YEKAIEYYQKAA  142 (282)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998863

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=92.31  E-value=0.45  Score=45.16  Aligned_cols=61  Identities=13%  Similarity=-0.030  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS  346 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s  346 (436)
                      -....|..++..|+|.+|+..|+++++.-+..    ..+...++.+|...||.++|+.+|++...
T Consensus       116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~----~~~~~~la~i~~~~g~~~eA~~~l~~~l~  176 (355)
T cd05804         116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDD----AWAVHAVAHVLEMQGRFKEGIAFMESWRD  176 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence            34567889999999999999999999988776    34566688899999999999999998753

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=92.11  E-value=0.96  Score=49.58  Aligned_cols=91  Identities=14%  Similarity=0.116  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc
Q 013807          252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  331 (436)
Q Consensus       252 aR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  331 (436)
                      .+..+..+.+..|++-.  .++|..-.   ..+..|..+.+.|++.+|+.+|+++++.-|.+..     .+.++.+|...
T Consensus        60 ~~~g~~~~A~~~~~~al--~~~P~~~~---a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-----~~~la~~l~~~  129 (765)
T PRK10049         60 RNLKQWQNSLTLWQKAL--SLEPQNDD---YQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-----LLALAYVYKRA  129 (765)
T ss_pred             HHcCCHHHHHHHHHHHH--HhCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHC
Confidence            33444556666666543  34454422   2356788889999999999999999988655433     66689999999


Q ss_pred             CChHHHHHHHHHHh-cCCCHHH
Q 013807          332 HRPKEARIMYEKLQ-SHPNALV  352 (436)
Q Consensus       332 GR~~EAiaLYkkL~-sHP~~eV  352 (436)
                      |+.++|+..|+++. .+|+...
T Consensus       130 g~~~~Al~~l~~al~~~P~~~~  151 (765)
T PRK10049        130 GRHWDELRAMTQALPRAPQTQQ  151 (765)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999985 6886543

>PRK11189 lipoprotein NlpI; Provisional

Probab=91.85  E-value=1.6  Score=42.22  Aligned_cols=70  Identities=10%  Similarity=-0.072  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL  351 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e  351 (436)
                      ..++--+..|..+...|++.+|+..|++|+++-|..    ..+...++.+|...|+.++|+..|++.. ..|+-.
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~  132 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  132 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            345568889999999999999999999999987654    5788899999999999999999999985 467643

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=91.85  E-value=0.87  Score=41.93  Aligned_cols=91  Identities=18%  Similarity=0.115  Sum_probs=66.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCCcCCcchHHHHHH-HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHH
Q 013807          246 TAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEK-ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQW  324 (436)
Q Consensus       246 teEEkaaR~~rtke~LaaYrk~~Gl~Vdp~~k~e~ee-a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwL  324 (436)
                      +.++.+++-+++...|..|+++.       .+++++. ..+.|.-+...|++..|++.|+.+.+.+   +-.|=.+.|++
T Consensus         8 ~~~~~~~~~~~Le~elk~~~~n~-------~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l   77 (177)
T PF10602_consen    8 TKAKNAEELEKLEAELKDAKSNL-------GKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCL   77 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc-------chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHH
Confidence            44555777888888999999777       4555554 5567999999999999999999999987   66777777776


Q ss_pred             HHHHHh--cCChHHHHHHHHHHhc
Q 013807          325 SICQDS--LHRPKEARIMYEKLQS  346 (436)
Q Consensus       325 AiAydA--~GR~~EAiaLYkkL~s  346 (436)
                      .++-=+  .|+.........+..+
T Consensus        78 ~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   78 NVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHH
Confidence            655433  3455555555555543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.75  E-value=0.74  Score=45.81  Aligned_cols=74  Identities=20%  Similarity=0.277  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccc-h-------------------------hHHHHHH-------
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL-H-------------------------GLAALQW-------  324 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L-G-------------------------GeaqLwL-------  324 (436)
                      +++..+=.+|..+|..|.|.+|...|..|++.|+.-+.- -                         --++||-       
T Consensus        93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~  172 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE  172 (271)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence            455667778999999999999999999999999876531 1                         1233443       


Q ss_pred             --HHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013807          325 --SICQDSLHRPKEARIMYEKLQ-SHPNAL  351 (436)
Q Consensus       325 --AiAydA~GR~~EAiaLYkkL~-sHP~~e  351 (436)
                        |-+|+.+...++|+.=|++|. +.|...
T Consensus       173 RRAeayek~ek~eealeDyKki~E~dPs~~  202 (271)
T KOG4234|consen  173 RRAEAYEKMEKYEEALEDYKKILESDPSRR  202 (271)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence              788999999999999999996 777654

>TIGR00540 hemY_coli hemY protein

Probab=91.65  E-value=0.59  Score=47.05  Aligned_cols=59  Identities=19%  Similarity=0.161  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHH--HHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHH
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEK--VMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEK  343 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEk--A~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkk  343 (436)
                      |.-.+..|..++..|+|.+|.++||+  +++.-+     ..++...|+.+|+..|++++|..+|++
T Consensus       335 ~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-----~~~~~~~La~ll~~~g~~~~A~~~~~~  395 (409)
T TIGR00540       335 CCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-----DANDLAMAADAFDQAGDKAEAAAMRQD  395 (409)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            66677889999999999999999995  444432     345667899999999999999999996

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=91.55  E-value=1  Score=44.94  Aligned_cols=72  Identities=21%  Similarity=0.127  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC-HHH
Q 013807          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN-ALV  352 (436)
Q Consensus       277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~-~eV  352 (436)
                      .+..+..++.|..+|++|++..|...||+|++.=+- +.   .+.+-+|..|+..|..+-|...|++-. .||+ .+|
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~---~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdV  105 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YY---LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDV  105 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cH---HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccch
Confidence            356678899999999999999999999999986543 33   355667889999999999999999974 5664 444

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=91.53  E-value=1  Score=48.79  Aligned_cols=87  Identities=9%  Similarity=0.043  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhh----hhhHHHHHHhhcccCccchhHHHHHHHHHHHhc
Q 013807          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKE----ALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  331 (436)
Q Consensus       256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~----AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  331 (436)
                      +..+.++.|++-..  .+|..   ....+..|..++..|+|.+    |+.+|++|++.-|..    ..+.+.|+.+|...
T Consensus       227 ~~~eA~~~~~~al~--~~p~~---~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~  297 (656)
T PRK15174        227 KYQEAIQTGESALA--RGLDG---AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN----VRIVTLYADALIRT  297 (656)
T ss_pred             CHHHHHHHHHHHHh--cCCCC---HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHC
Confidence            34445555555442  23432   3345668999999999986    899999999887642    47788899999999


Q ss_pred             CChHHHHHHHHHHh-cCCCHH
Q 013807          332 HRPKEARIMYEKLQ-SHPNAL  351 (436)
Q Consensus       332 GR~~EAiaLYkkL~-sHP~~e  351 (436)
                      |+.++|+..|++.. .+|+..
T Consensus       298 g~~~eA~~~l~~al~l~P~~~  318 (656)
T PRK15174        298 GQNEKAIPLLQQSLATHPDLP  318 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCCH
Confidence            99999999999985 677743

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=91.50  E-value=0.85  Score=49.12  Aligned_cols=60  Identities=15%  Similarity=0.035  Sum_probs=49.3

Q ss_pred             HHHHHHHhCCchhhhhhHHHHHHhhcc----cCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807          285 KDGDSLMDSGKLKEALPFYEKVMNKMV----FKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~----~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (436)
                      ..|..++..|+|.+|+..|++|++..-    ....-=+.+-..||.+|-..|+++||...|+.-
T Consensus       246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A  309 (508)
T KOG1840|consen  246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA  309 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            489999999999999999999987653    223333788899999999999999987777653

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=91.07  E-value=1  Score=44.89  Aligned_cols=69  Identities=14%  Similarity=0.161  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013807          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP  348 (436)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP  348 (436)
                      -+.+.|++|...++.|.|.+|+.+||++...- +.|++.=.++|-|+-|+=-.+..++|++.-+.-. .||
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP  102 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP  102 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Confidence            46789999999999999999999999987544 4567779999999999999999999999887764 344

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=91.00  E-value=0.51  Score=47.14  Aligned_cols=56  Identities=23%  Similarity=0.200  Sum_probs=50.6

Q ss_pred             HHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      .|+.++..|+|.+|+..|-+|..+-+...    ++-+-|++|||-+||+++|..-|.|..
T Consensus       106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~----~~~~~lgaaldq~Gr~~~Ar~ay~qAl  161 (257)
T COG5010         106 QGKNQIRNGNFGEAVSVLRKAARLAPTDW----EAWNLLGAALDQLGRFDEARRAYRQAL  161 (257)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhccCCCCh----hhhhHHHHHHHHccChhHHHHHHHHHH
Confidence            89999999999999999999998877664    556778999999999999999999974

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.00  E-value=0.46  Score=31.32  Aligned_cols=31  Identities=23%  Similarity=0.432  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcc
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMV  311 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~  311 (436)
                      +.-+..|..++..|+|.+|+..|++|+++-+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            3456788889999999999999999887654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=90.64  E-value=1.2  Score=51.32  Aligned_cols=62  Identities=11%  Similarity=0.035  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (436)
                      +..-.|..|..++..|+|.+|+..|++|++.-|.+    ..+.+.|+.+|=..|+.++|+..+++.
T Consensus        43 ~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n----~~~~~~LA~~yl~~g~~~~A~~~~~kA  104 (987)
T PRK09782         43 VIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDN----IPLTLYLAEAYRHFGHDDRARLLLEDQ  104 (987)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            33344444444444444444444444444444333    233344444444444444444444444

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=90.59  E-value=1.5  Score=47.39  Aligned_cols=67  Identities=18%  Similarity=0.137  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc-CccchhHHHHH---HHHHHHhcCChHHHHHHHHHH
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF-KSELHGLAALQ---WSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~-~S~LGGeaqLw---LAiAydA~GR~~EAiaLYkkL  344 (436)
                      ..+......+..+..+|+|++|.++++.||..... -...|+++...   ++..+++.++.++|+.+|++.
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a  351 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA  351 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            44555666799999999999999999999988765 23566777765   678899999999999999865

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=89.80  E-value=2.1  Score=40.87  Aligned_cols=87  Identities=15%  Similarity=0.071  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc--CccchhHHHHHHHHHHHhcC
Q 013807          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLH  332 (436)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~G  332 (436)
                      .-+...+..|++.-.      .+-...-.++.|..+|..|+|..|+.+|+.+......  =..|-..+-..|.-|+-.+|
T Consensus       159 ~lL~~A~~~f~~~~~------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~  232 (247)
T PF11817_consen  159 ELLEKAYEQFKKYGQ------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG  232 (247)
T ss_pred             HHHHHHHHHHHHhcc------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            334455556664332      3444455788999999999999999999999332211  14667788888999999999


Q ss_pred             ChHHHHHHHHHHhcC
Q 013807          333 RPKEARIMYEKLQSH  347 (436)
Q Consensus       333 R~~EAiaLYkkL~sH  347 (436)
                      +.++.+..|=+|-+|
T Consensus       233 ~~~~~l~~~leLls~  247 (247)
T PF11817_consen  233 DVEDYLTTSLELLSR  247 (247)
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999888765

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=89.65  E-value=1.8  Score=48.87  Aligned_cols=106  Identities=12%  Similarity=0.142  Sum_probs=74.8

Q ss_pred             HHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Q 013807          286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFMFSFQ  364 (436)
Q Consensus       286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLlyiLE  364 (436)
                      .|+.+...|+|.+|++.|+++++.-|.+..+-    +-|+++|-..++.++|+..++++. ..|.  .+-. ..+.|+..
T Consensus       108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l----~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--~~~~-l~layL~~  180 (822)
T PRK14574        108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLI----SGMIMTQADAGRGGVVLKQATELAERDPT--VQNY-MTLSYLNR  180 (822)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH----HHHHHHHhhcCCHHHHHHHHHHhcccCcc--hHHH-HHHHHHHH
Confidence            37788899999999999999999998885433    466888888999999999999997 5665  3333 56677772


Q ss_pred             -------hhhhhh-hcccCCC-CcchHHHHHHhhcccccccCc
Q 013807          365 -------AMEMMK-VRSSSDK-NTDYRNFFEAFVEDKTNYPLQ  398 (436)
Q Consensus       365 -------Ap~llK-v~~~~~~-~t~Yd~Yf~~f~~~kt~y~~~  398 (436)
                             |.+..+ +-...|. .+-|..|..+.+..+...++.
T Consensus       181 ~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~  223 (822)
T PRK14574        181 ATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPAL  223 (822)
T ss_pred             hcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence                   222111 1111454 445688888888777665543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=89.58  E-value=2.1  Score=45.46  Aligned_cols=106  Identities=20%  Similarity=0.204  Sum_probs=76.9

Q ss_pred             hcCCcCCcchHHHHH---HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch---------------hHHHHHHHHHH
Q 013807          267 SVGLNVDPKLKSECE---KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---------------GLAALQWSICQ  328 (436)
Q Consensus       267 ~~Gl~Vdp~~k~e~e---ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---------------GeaqLwLAiAy  328 (436)
                      ++-|.||+=..+...   +.-+.|..+|.+|+|.+|+..|-++|+.-+-+--++               .|+-..+|+++
T Consensus        81 ~~dL~vd~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL  160 (536)
T KOG4648|consen   81 KQDLPVDPIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL  160 (536)
T ss_pred             hccCCccHHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh
Confidence            467788876554333   234569999999999999999999999988777666               34444455544


Q ss_pred             ---------------HhcCChHHHHHHHHHHh-cCC-CHHHHHHHHHHHHHHHhhhhhhhc
Q 013807          329 ---------------DSLHRPKEARIMYEKLQ-SHP-NALVSKRARQFMFSFQAMEMMKVR  372 (436)
Q Consensus       329 ---------------dA~GR~~EAiaLYkkL~-sHP-~~eVrKQAkrLlyiLEAp~llKv~  372 (436)
                                     .++|...||..=|+..- -.| +.+++|+..+|.=-+|+-=..|.+
T Consensus       161 d~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT  221 (536)
T KOG4648|consen  161 DKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKST  221 (536)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcC
Confidence                           47888999999998764 344 678999999887766665444433

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=88.82  E-value=0.62  Score=29.87  Aligned_cols=30  Identities=10%  Similarity=0.356  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcc
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMV  311 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~  311 (436)
                      ..|..|..++..|++.+|+..|+.+++.-|
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            578999999999999999999999998765

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=88.68  E-value=0.94  Score=48.49  Aligned_cols=131  Identities=19%  Similarity=0.263  Sum_probs=90.3

Q ss_pred             hhcCCcCCcchH---------HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccC---------------ccch----
Q 013807          266 KSVGLNVDPKLK---------SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK---------------SELH----  317 (436)
Q Consensus       266 k~~Gl~Vdp~~k---------~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~---------------S~LG----  317 (436)
                      ..++|++||.-.         ..|+..=..|..+|..|.|+.|.+.|-.|+..-|-+               ++||    
T Consensus       226 f~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~e  305 (486)
T KOG0550|consen  226 FQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLRE  305 (486)
T ss_pred             HhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchh
Confidence            356788888744         334455567999999999999999999987765543               3444    


Q ss_pred             ---------------hHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHhhh------hhhhccc-
Q 013807          318 ---------------GLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQFMFSFQAME------MMKVRSS-  374 (436)
Q Consensus       318 ---------------GeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkrLlyiLEAp~------llKv~~~-  374 (436)
                                     =++-|.-|.||.+++..++|..=|++. ++.-..++|+--++.-..|+=.+      .+.++.. 
T Consensus       306 aisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~a  385 (486)
T KOG0550|consen  306 AISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNA  385 (486)
T ss_pred             hhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhc
Confidence                           134455677888888888888888877 45556788877777777777221      1223333 


Q ss_pred             --CCCCcchHHHHHHhhccccccc
Q 013807          375 --SDKNTDYRNFFEAFVEDKTNYP  396 (436)
Q Consensus       375 --~~~~t~Yd~Yf~~f~~~kt~y~  396 (436)
                        .+++-.|+.-.-.|.-+++.-.
T Consensus       386 s~~eikkayrk~AL~~Hpd~~ags  409 (486)
T KOG0550|consen  386 SDDEIKKAYRKLALVHHPDKNAGS  409 (486)
T ss_pred             ccchhhhHHHHHHHHhCCCcCcch
Confidence              3477788888888877776655

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=88.43  E-value=0.88  Score=29.75  Aligned_cols=31  Identities=26%  Similarity=0.350  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcc
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMV  311 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~  311 (436)
                      +.-+..|+.++..|++.+|+.+|++|++.-+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4456778888888888888888888876543

...

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=87.92  E-value=1.3  Score=44.68  Aligned_cols=58  Identities=3%  Similarity=-0.212  Sum_probs=40.3

Q ss_pred             HHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 013807          286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSH  347 (436)
Q Consensus       286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sH  347 (436)
                      .++.++..|+|.+|+..++++.+.-|.+.    .+...++.+|-..|+.++|+.++.+|.++
T Consensus       159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~----~al~ll~~~~~~~gdw~~a~~~l~~l~k~  216 (398)
T PRK10747        159 RVRIQLARNENHAARHGVDKLLEVAPRHP----EVLRLAEQAYIRTGAWSSLLDILPSMAKA  216 (398)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Confidence            36667777777777777777766665544    45566677777777888888777777643

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.58  E-value=2.1  Score=42.88  Aligned_cols=66  Identities=15%  Similarity=0.135  Sum_probs=59.9

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      .|+.+-.++..|+|..|...|..=++.-| +|.+-..+..||.-||=+.|+.++|...|..+. .||.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP-~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~  210 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYP-NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK  210 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC
Confidence            89999999999999999999999888875 456778999999999999999999999999995 5665

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=87.38  E-value=1.2  Score=46.87  Aligned_cols=56  Identities=18%  Similarity=0.035  Sum_probs=39.0

Q ss_pred             HHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      .+.-...-..|++|+.+-++|++.=+.|.    .+-..-..||-++|..+.|+..+++.+
T Consensus       263 lA~c~lKl~~~~~Ai~~c~kvLe~~~~N~----KALyRrG~A~l~~~e~~~A~~df~ka~  318 (397)
T KOG0543|consen  263 LAACYLKLKEYKEAIESCNKVLELDPNNV----KALYRRGQALLALGEYDLARDDFQKAL  318 (397)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhcCCCch----hHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            35555666777777777777777766554    345566777777777777777777774

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=87.22  E-value=3.5  Score=45.04  Aligned_cols=73  Identities=19%  Similarity=0.236  Sum_probs=58.4

Q ss_pred             cCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          271 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       271 ~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      .++|++   +++.-..|..+|..|+|+.||.+|.+|+..-|-.-+    .--+.|-||-.+|...+|++=|+++. -||+
T Consensus       352 ~~~pe~---A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~----lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~  424 (539)
T KOG0548|consen  352 YINPEK---AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR----LYSNRAACYLKLGEYPEALKDAKKCIELDPN  424 (539)
T ss_pred             hhChhH---HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH----HHHHHHHHHHHHhhHHHHHHHHHHHHhcCch
Confidence            456666   344555599999999999999999999888755433    34467899999999999999999986 5876


Q ss_pred             H
Q 013807          350 A  350 (436)
Q Consensus       350 ~  350 (436)
                      .
T Consensus       425 ~  425 (539)
T KOG0548|consen  425 F  425 (539)
T ss_pred             H
Confidence            4

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=86.75  E-value=1.5  Score=45.96  Aligned_cols=59  Identities=17%  Similarity=0.251  Sum_probs=48.8

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (436)
                      -+-.|+.++..|.|..||+.||.|.+.   +-.+=|||.--|..||..+|+.++.+.--+..
T Consensus       217 si~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~  275 (389)
T COG2956         217 SIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA  275 (389)
T ss_pred             hhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            455699999999999999999998764   45788999999999999999977766544433

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=86.66  E-value=2.4  Score=34.84  Aligned_cols=57  Identities=18%  Similarity=0.133  Sum_probs=48.0

Q ss_pred             HHHhCCchhhhhhHHHHHHhhcccCccch-----hHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          289 SLMDSGKLKEALPFYEKVMNKMVFKSELH-----GLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       289 ~AmerGkYr~AV~~lEkA~~~v~~~S~LG-----GeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      .+..+|.|.+|++.|....+.........     ..+.+.+|.++-..|+.++|+..++...
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi   68 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI   68 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            46789999999999999988876665544     5778899999999999999999998764

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=86.50  E-value=1.9  Score=42.63  Aligned_cols=66  Identities=20%  Similarity=0.346  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHH--HHHHHHHhcCChHHHHHHHHHH-hcCCC
Q 013807          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAAL--QWSICQDSLHRPKEARIMYEKL-QSHPN  349 (436)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqL--wLAiAydA~GR~~EAiaLYkkL-~sHP~  349 (436)
                      ..+..|..|..+-+-|+|.+|+++|++++.-+     +.|+.+|  -+|.|+=++++..+|+..-++| ..||.
T Consensus        88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~-----fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa  156 (251)
T COG4700          88 TVQNRYRLANALAELGRYHEAVPHYQQALSGI-----FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA  156 (251)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc-----cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence            45678899999999999999999999987543     4455444  4567778889999999998888 45654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=86.04  E-value=2  Score=31.84  Aligned_cols=55  Identities=20%  Similarity=0.311  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCC-chhhhhhHHHHHHhhc
Q 013807          251 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSG-KLKEALPFYEKVMNKM  310 (436)
Q Consensus       251 aaR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerG-kYr~AV~~lEkA~~~v  310 (436)
                      ..+..+..+.+..|.+-+  .+||..   ..-.+..|..++..| +|.+|+..|++|+++-
T Consensus        13 ~~~~~~~~~A~~~~~~ai--~~~p~~---~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen   13 YFQQGDYEEAIEYFEKAI--ELDPNN---AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             HHHTTHHHHHHHHHHHHH--HHSTTH---HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHcCCHHHHHHHHHHHH--HcCCCC---HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            455677888888888766  556664   345888999999999 8999999999998764

...

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=85.79  E-value=1.1  Score=30.84  Aligned_cols=24  Identities=21%  Similarity=0.494  Sum_probs=15.9

Q ss_pred             HHHHHHHhCCchhhhhhHHHHHHh
Q 013807          285 KDGDSLMDSGKLKEALPFYEKVMN  308 (436)
Q Consensus       285 ~~Gk~AmerGkYr~AV~~lEkA~~  308 (436)
                      ..|..++..|+|.+|+++||+++.
T Consensus         4 ~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    4 NLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456777777777777777777553

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=85.78  E-value=3.7  Score=38.28  Aligned_cols=76  Identities=12%  Similarity=0.090  Sum_probs=61.1

Q ss_pred             HHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cC----CCHHHHHHHHH
Q 013807          284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SH----PNALVSKRARQ  358 (436)
Q Consensus       284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sH----P~~eVrKQAkr  358 (436)
                      |-.|--.=..|+|.+|+..|+.|..+-+    =.-+.-..++.||=++|+.++|+.-.+.-. .+    -+.+|+++|+.
T Consensus        73 ~gLG~~~Q~~g~~~~AI~aY~~A~~L~~----ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~  148 (157)
T PRK15363         73 FRLGECCQAQKHWGEAIYAYGRAAQIKI----DAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEK  148 (157)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCC----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Confidence            3446666778999999999999987764    345677889999999999999998888664 33    47789999999


Q ss_pred             HHHHH
Q 013807          359 FMFSF  363 (436)
Q Consensus       359 LlyiL  363 (436)
                      +|-.|
T Consensus       149 ~L~~l  153 (157)
T PRK15363        149 MLQQL  153 (157)
T ss_pred             HHHHh
Confidence            88655

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=85.78  E-value=7.5  Score=33.04  Aligned_cols=75  Identities=13%  Similarity=0.063  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchh-------------------HHHHHHHHHHHhcCChHHHH
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG-------------------LAALQWSICQDSLHRPKEAR  338 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG-------------------eaqLwLAiAydA~GR~~EAi  338 (436)
                      .+++..+..|..+...|.-.++++.|++|+++.... -|.|                   .+...++.++...|+.++|+
T Consensus         4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~-~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~   82 (146)
T PF03704_consen    4 DRFEALVREARAAARAGDPEEAIELLEEALALYRGD-FLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEAL   82 (146)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SS-TTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCC-CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence            467778888889999999999999999998877533 2221                   34556777888999999999


Q ss_pred             HHHHHHh-cCCCHHHH
Q 013807          339 IMYEKLQ-SHPNALVS  353 (436)
Q Consensus       339 aLYkkL~-sHP~~eVr  353 (436)
                      .+|+++. .+|.-+--
T Consensus        83 ~~~~~~l~~dP~~E~~   98 (146)
T PF03704_consen   83 RLLQRALALDPYDEEA   98 (146)
T ss_dssp             HHHHHHHHHSTT-HHH
T ss_pred             HHHHHHHhcCCCCHHH
Confidence            9999996 79987643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function

Probab=85.55  E-value=1.9  Score=34.18  Aligned_cols=60  Identities=25%  Similarity=0.345  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcc--cCccchhHHHHHHHHHHHhcCChHHHHHHH
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMV--FKSELHGLAALQWSICQDSLHRPKEARIMY  341 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~--~~S~LGGeaqLwLAiAydA~GR~~EAiaLY  341 (436)
                      +++..|..+|+.|+|-+|=+.||.+-...+  .+.-+-|.+|+--|..+-..|+.+-|..|+
T Consensus         1 ~~~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~   62 (62)
T PF03745_consen    1 EALEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL   62 (62)
T ss_dssp             -HHHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence            478899999999999999999999865444  556788999999999888899988888775

The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=84.91  E-value=3.8  Score=46.48  Aligned_cols=91  Identities=12%  Similarity=0.097  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHh
Q 013807          251 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS  330 (436)
Q Consensus       251 aaR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA  330 (436)
                      ..|.-++.+.+..+++-.  ..+|..-..   .++..+.+...|++.+|+.++|++++    ...+.-...+-+|.+|-.
T Consensus        44 ~~r~Gd~~~Al~~L~qaL--~~~P~~~~a---v~dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~  114 (822)
T PRK14574         44 RARAGDTAPVLDYLQEES--KAGPLQSGQ---VDDWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRN  114 (822)
T ss_pred             HHhCCCHHHHHHHHHHHH--hhCccchhh---HHHHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHH
Confidence            344445556666666543  444443211   11555666677999999999999882    223334555566889999


Q ss_pred             cCChHHHHHHHHHHh-cCCCH
Q 013807          331 LHRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       331 ~GR~~EAiaLYkkL~-sHP~~  350 (436)
                      .|+.++|+.+|+++. .+|+-
T Consensus       115 ~gdyd~Aiely~kaL~~dP~n  135 (822)
T PRK14574        115 EKRWDQALALWQSSLKKDPTN  135 (822)
T ss_pred             cCCHHHHHHHHHHHHhhCCCC
Confidence            999999999999995 56653

>TIGR00540 hemY_coli hemY protein

Probab=84.75  E-value=7.4  Score=39.31  Aligned_cols=71  Identities=17%  Similarity=0.093  Sum_probs=36.2

Q ss_pred             HHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC-CHHHHHHHHHH
Q 013807          286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP-NALVSKRARQF  359 (436)
Q Consensus       286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP-~~eVrKQAkrL  359 (436)
                      .|+.+..+|++.+|..+|+++.+..+.. .+  .+.+.++..+-..|+.++|++..+.+. .+| |+.+.+...++
T Consensus       124 aA~aa~~~g~~~~A~~~l~~a~~~~p~~-~l--~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~  196 (409)
T TIGR00540       124 AAEAAQQRGDEARANQHLEEAAELAGND-NI--LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEA  196 (409)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCcC-ch--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3555666666666666666665433211 11  123334555555666666666666663 455 33444433333

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=84.36  E-value=4.9  Score=29.57  Aligned_cols=55  Identities=24%  Similarity=0.373  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc
Q 013807          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF  312 (436)
Q Consensus       253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~  312 (436)
                      +..+..+.++.|+.=+.  .+|.   ..+..+..|..++.+|+|.+|+.+|+.+++.-|.
T Consensus         9 ~~g~~~~A~~~~~~~l~--~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    9 QQGDYDEAIAAFEQALK--QDPD---NPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HCTHHHHHHHHHHHHHC--CSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HcCCHHHHHHHHHHHHH--HCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            34456666666665553  3354   4555888999999999999999999999987654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=84.35  E-value=2.6  Score=48.30  Aligned_cols=65  Identities=26%  Similarity=0.374  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (436)
                      .+.+.--++..+.+|+.|+|.+|+++|-.++..-.-+.   +-+-.-+|-||-.+|+.++||.-|++.
T Consensus       411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~---~~vw~~~a~c~~~l~e~e~A~e~y~kv  475 (895)
T KOG2076|consen  411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN---AFVWYKLARCYMELGEYEEAIEFYEKV  475 (895)
T ss_pred             hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc---hhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34445556666777777777777776666554433333   222333566677777777777666665

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=83.95  E-value=2.1  Score=28.43  Aligned_cols=25  Identities=20%  Similarity=0.353  Sum_probs=13.7

Q ss_pred             HHHHHHHHhCCchhhhhhHHHHHHh
Q 013807          284 LKDGDSLMDSGKLKEALPFYEKVMN  308 (436)
Q Consensus       284 ~~~Gk~AmerGkYr~AV~~lEkA~~  308 (436)
                      ...|..++.+|+|.+|+.++++|++
T Consensus         6 ~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    6 NNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhcchhhHHHHHHHH
Confidence            3445556666666666666665544

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=82.15  E-value=3.2  Score=31.59  Aligned_cols=34  Identities=21%  Similarity=0.402  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013807          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM  310 (436)
Q Consensus       277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v  310 (436)
                      ...+...+..|......|+|.+|+++|++|++..
T Consensus        43 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen   43 PDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            3557788899999999999999999999998763

...

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=82.13  E-value=5.7  Score=36.85  Aligned_cols=95  Identities=18%  Similarity=0.284  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCC--cCCcch-------HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch
Q 013807          247 AEARAAKEERTRQLLAAYKKSVGL--NVDPKL-------KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH  317 (436)
Q Consensus       247 eEEkaaR~~rtke~LaaYrk~~Gl--~Vdp~~-------k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG  317 (436)
                      +-||.-.+.-..+.-+.||+-+-+  +|-++.       .+-|-..|  ...+-.-|+|.+++..-+.|+-..+++-+|+
T Consensus        15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~L--s~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~   92 (144)
T PF12968_consen   15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGL--SGALAGLGRYDECLQSADRALRYFNRRGELH   92 (144)
T ss_dssp             HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHH--HHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHH--HHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence            335555555666667777776532  222221       12233322  4456788999999999999999999999998


Q ss_pred             h-HHHHH------HHHHHHhcCChHHHHHHHHH
Q 013807          318 G-LAALQ------WSICQDSLHRPKEARIMYEK  343 (436)
Q Consensus       318 G-eaqLw------LAiAydA~GR~~EAiaLYkk  343 (436)
                      - +-.+|      -+.|++.+||.+||+.-|+.
T Consensus        93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~  125 (144)
T PF12968_consen   93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM  125 (144)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence            3 33344      57899999999999988765

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=81.50  E-value=2.4  Score=29.18  Aligned_cols=22  Identities=14%  Similarity=-0.026  Sum_probs=19.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHH
Q 013807          322 LQWSICQDSLHRPKEARIMYEK  343 (436)
Q Consensus       322 LwLAiAydA~GR~~EAiaLYkk  343 (436)
                      ..|+.+|...|+.++|+.+|++
T Consensus         3 ~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    3 NNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHH
Confidence            4689999999999999999998

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=81.49  E-value=2.2  Score=30.28  Aligned_cols=34  Identities=15%  Similarity=0.024  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCcc
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE  315 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~  315 (436)
                      ..+..|..++..|++.+|+..|+++++..|.+..
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~   36 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPE   36 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence            3567799999999999999999999999887753

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=80.91  E-value=16  Score=28.34  Aligned_cols=55  Identities=33%  Similarity=0.388  Sum_probs=31.0

Q ss_pred             HHHhCCchhhhhhHHHHHHhhcccC-ccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          289 SLMDSGKLKEALPFYEKVMNKMVFK-SELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       289 ~AmerGkYr~AV~~lEkA~~~v~~~-S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      .++..|++..|+..|+++.. +... .... ...+.+.-.+...++.++|+..+.+..
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~  194 (291)
T COG0457         139 ALYELGDYEEALELYEKALE-LDPELNELA-EALLALGALLEALGRYEEALELLEKAL  194 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHh-cCCCccchH-HHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence            66777777777777777755 3332 1222 222222222666677777777777765

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=80.66  E-value=3.1  Score=27.60  Aligned_cols=25  Identities=20%  Similarity=0.048  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHH
Q 013807          320 AALQWSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       320 aqLwLAiAydA~GR~~EAiaLYkkL  344 (436)
                      +...|+++|-..|+.++|+.+|++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~a   28 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEA   28 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHH
Confidence            4567999999999999999998876

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=80.17  E-value=3.9  Score=26.39  Aligned_cols=31  Identities=26%  Similarity=0.097  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          319 LAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       319 eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ++-.+++.+|-..|+.++|+..|++.. ..|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            456789999999999999999999985 3443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	436
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 44/300 (14%), Positives = 91/300 (30%), Gaps = 68/300 (22%)

Query: 182 EVEIIVGDTSKFGES----TVLRPGPKQ------EENLEF-YKPKVSTWGVFPR-PGNI- 228
           E++ I+        +      L    ++      EE L   YK  +S      R P  + 
Sbjct: 50  EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 229 -------SKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKL---KS 278
                   + +   +     +V     +R     + RQ L   + +  + +D  L   K+
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNV-----SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 279 ECEKALKDGDSLMDSGKLKEALP---FYEKVMNKMVFKSELHGLAALQWSICQDSLHRP- 334
                +   D  +   K++  +    F+  + N    ++ L  L  L + I  +   R  
Sbjct: 165 ----WVA-LDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 335 ------------KEARIMYEKLQSHPNALV------SKRARQFMFSFQAMEMMKVRSSSD 376
                       +       K + + N L+      + +A    F+     ++  R    
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-AFNLSCKILLTTRFKQ- 276

Query: 377 KNTDYRNFFEA--FVEDKTNYPLQEAGSEE------GALTQALPYMIFLASPIFVILLIA 428
             TD+ +         D  +  L     +           Q LP  +   +P   + +IA
Sbjct: 277 -VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-RRLSIIA 334

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	436
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.44
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.37
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.23
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.99
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.97
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.96
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.91
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.87
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.81
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.81
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.81
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.81
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.8
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.8
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.79
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.78
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.76
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.73
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.7
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.66
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.63
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.63
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.61
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.61
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.6
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.53
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.5
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.49
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.48
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.48
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.48
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.47
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.47
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.46
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.45
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.45
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.43
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.43
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.39
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.39
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.35
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.35
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.34
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.33
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.33
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.32
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.3
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.25
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.23
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.22
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.21
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.21
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.16
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.14
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.14
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.13
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.12
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.11
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.1
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.09
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.03
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.03
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.02
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.0
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	96.99
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	96.98
2gw1_A	514	Mitochondrial precursor proteins import receptor;	96.95
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	96.93
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.9
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.89
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	96.87
3u4t_A	272	TPR repeat-containing protein; structural genomics	96.87
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	96.87
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	96.87
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	96.85
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	96.82
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	96.81
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.81
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	96.8
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	96.77
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	96.76
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	96.76
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	96.76
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	96.76
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.75
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.74
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	96.73
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	96.73
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	96.73
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.73
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.72
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.71
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	96.7
3u4t_A	272	TPR repeat-containing protein; structural genomics	96.7
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	96.67
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	96.64
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	96.63
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	96.62
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	96.6
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	96.59
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	96.58
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	96.54
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.51
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	96.48
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	96.47
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	96.44
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	96.43
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.38
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	96.37
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	96.36
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	96.36
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	96.36
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	96.34
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.33
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.32
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	96.32
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	96.32
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.31
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	96.27
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.25
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	96.24
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.21
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	96.21
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	96.18
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	96.16
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	96.14
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.12
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	96.12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	96.1
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	96.02
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.02
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	96.02
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	96.02
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.01
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.0
3k9i_A	117	BH0479 protein; putative protein binding protein,	95.99
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	95.97
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	95.87
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	95.85
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	95.83
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	95.79
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.79
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	95.76
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	95.75
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	95.74
2gw1_A	514	Mitochondrial precursor proteins import receptor;	95.72
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	95.7
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	95.68
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	95.67
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	95.66
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	95.66
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	95.61
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	95.56
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	95.49
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	95.49
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	95.49
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	95.48
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	95.47
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	95.46
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	95.42
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	95.34
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.17
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	94.97
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	94.96
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	94.91
4g1t_A	472	Interferon-induced protein with tetratricopeptide	94.9
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	94.66
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	94.64
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	94.51
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	94.47
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	94.43
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	93.82
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	93.69
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	93.57
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	93.49
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	93.2
1klx_A	138	Cysteine rich protein B; structural genomics, heli	93.05
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	92.99
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.46
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	92.21
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	92.2
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	92.18
2kat_A	115	Uncharacterized protein; NESG, structure, structur	92.18
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	91.8
4g1t_A	472	Interferon-induced protein with tetratricopeptide	91.63
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	90.42
1klx_A	138	Cysteine rich protein B; structural genomics, heli	89.73
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	89.59
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	88.75
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	87.16
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	87.04
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	85.62
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	84.7
1pc2_A	152	Mitochondria fission protein; unknown function; NM	84.02
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	83.83
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	83.81
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	83.23
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	81.6
2ijq_A	161	Hypothetical protein; structural genomics, PSI, pr	80.67

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.44  E-value=1.6e-06  Score=73.53  Aligned_cols=102  Identities=12%  Similarity=0.086  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCC
Q 013807          254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  333 (436)
Q Consensus       254 ~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  333 (436)
                      ..+..+.+..|++-.  .++|..-.   --+..|..++..|+|.+|+..|++|+.+-|...    .+.+.++.||..+|+
T Consensus        49 ~g~~~eA~~~~~~al--~~~P~~~~---~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~----~~~~~lg~~~~~lg~  119 (151)
T 3gyz_A           49 KGRIEEAEVFFRFLC--IYDFYNVD---YIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY----TPVFHTGQCQLRLKA  119 (151)
T ss_dssp             TTCHHHHHHHHHHHH--HHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC----HHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHHH--HhCCCCHH---HHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc----HHHHHHHHHHHHcCC
Confidence            345566677776554  45555433   356679999999999999999999999887654    578899999999999


Q ss_pred             hHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Q 013807          334 PKEARIMYEKLQ-SHPNALVSKRARQFMFSFQ  364 (436)
Q Consensus       334 ~~EAiaLYkkL~-sHP~~eVrKQAkrLlyiLE  364 (436)
                      .++|+..|++.. ..|+..++++|+.+|-.++
T Consensus       120 ~~eA~~~~~~al~l~~~~~~~~~A~~ll~~l~  151 (151)
T 3gyz_A          120 PLKAKECFELVIQHSNDEKLKIKAQSYLDAIQ  151 (151)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence            999999999985 7999999999999997764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.37  E-value=2.2e-06  Score=68.77  Aligned_cols=102  Identities=13%  Similarity=0.114  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccc---hhHHHHHHHHHHH
Q 013807          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL---HGLAALQWSICQD  329 (436)
Q Consensus       253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L---GGeaqLwLAiAyd  329 (436)
                      +..+..+.+..|.+-.  +++|..-   ..-+..|..++..|+|.+|+..|++|+++-+.....   -|.+-..++.||.
T Consensus        20 ~~~~~~~A~~~y~~Al--~~~p~~~---~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~   94 (127)
T 4gcn_A           20 KQKDFEKAHVHYDKAI--ELDPSNI---TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ   94 (127)
T ss_dssp             HTTCHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHH--HhCCCCH---HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence            3446678888888765  6677653   346678999999999999999999999987655433   2567788999999


Q ss_pred             hcCChHHHHHHHHHH-hcCCCHHHHHHHHHH
Q 013807          330 SLHRPKEARIMYEKL-QSHPNALVSKRARQF  359 (436)
Q Consensus       330 A~GR~~EAiaLYkkL-~sHP~~eVrKQAkrL  359 (436)
                      +.|+.++|+..|++- ..||++++.++-+++
T Consensus        95 ~~~~~~~A~~~~~kal~~~~~~~~~~~l~~l  125 (127)
T 4gcn_A           95 KQNDLSLAVQWFHRSLSEFRDPELVKKVKEL  125 (127)
T ss_dssp             HTTCHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCcCHHHHHHHHHh
Confidence            999999999999985 579999998775543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.23  E-value=1.2e-05  Score=61.24  Aligned_cols=105  Identities=10%  Similarity=0.089  Sum_probs=79.0

Q ss_pred             HHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHH
Q 013807          257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE  336 (436)
Q Consensus       257 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E  336 (436)
                      ..+.+..|++-.  ..+|......+..+..|..++..|+|.+|+.+|+++++.-+. +..-..+.++++.||...|+.++
T Consensus        18 ~~~A~~~~~~~~--~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~~~g~~~~   94 (129)
T 2xev_A           18 YDDASQLFLSFL--ELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQYGEGKNTE   94 (129)
T ss_dssp             HHHHHHHHHHHH--HHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHH--HHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHcCCHHH
Confidence            334444444332  223443333456788899999999999999999999987654 33457889999999999999999


Q ss_pred             HHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Q 013807          337 ARIMYEKLQ-SHPNALVSKRARQFMFSFQ  364 (436)
Q Consensus       337 AiaLYkkL~-sHP~~eVrKQAkrLlyiLE  364 (436)
                      |+..|+++. .+|+......|+..+-.++
T Consensus        95 A~~~~~~~~~~~p~~~~~~~a~~~l~~l~  123 (129)
T 2xev_A           95 AQQTLQQVATQYPGSDAARVAQERLQSIR  123 (129)
T ss_dssp             HHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence            999999985 7899888888777665554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.99  E-value=4e-05  Score=58.79  Aligned_cols=77  Identities=9%  Similarity=0.003  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh----cCCCHHHHHHH
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ----SHPNALVSKRA  356 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~----sHP~~eVrKQA  356 (436)
                      ...+..|..++..|+|.+|+.+|++|++.-+...    .+.+.++.||...|+.++|+..|++..    .+++....++.
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l   83 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVETDPDYV----GTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSEL   83 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence            3467889999999999999999999999876543    478899999999999999999999875    45666655555


Q ss_pred             HHHHH
Q 013807          357 RQFMF  361 (436)
Q Consensus       357 krLly  361 (436)
                      .+++-
T Consensus        84 ~~~l~   88 (100)
T 3ma5_A           84 QDAKL   88 (100)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.97  E-value=3e-05  Score=67.06  Aligned_cols=81  Identities=15%  Similarity=0.119  Sum_probs=69.8

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc----------CChHHHHHHHHHHh-cCCCHH
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL----------HRPKEARIMYEKLQ-SHPNAL  351 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~----------GR~~EAiaLYkkL~-sHP~~e  351 (436)
                      .+..|..++..|+|.+|+..|+++++.-+ .+....++.++++.||..+          |+.++|+..|+++. .+|+-.
T Consensus       151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  229 (261)
T 3qky_A          151 QYEAARLYERRELYEAAAVTYEAVFDAYP-DTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP  229 (261)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCC-CCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence            38889999999999999999999998764 5667789999999999988          99999999999996 799888


Q ss_pred             HHHHHHHHHHHHH
Q 013807          352 VSKRARQFMFSFQ  364 (436)
Q Consensus       352 VrKQAkrLlyiLE  364 (436)
                      .-++|..++--+.
T Consensus       230 ~~~~a~~~l~~~~  242 (261)
T 3qky_A          230 LLRTAEELYTRAR  242 (261)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7788877665443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.96  E-value=8.3e-05  Score=54.89  Aligned_cols=67  Identities=19%  Similarity=0.212  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (436)
                      ++..+..|..++..|+|.+|+.+|++|+..-+..    ..+...++.||...|+.++|+..|++.. .+|+-
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN----PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            4567889999999999999999999999987654    5677889999999999999999999975 56764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.91  E-value=7e-05  Score=58.01  Aligned_cols=90  Identities=13%  Similarity=0.158  Sum_probs=68.5

Q ss_pred             HHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHH
Q 013807          259 QLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEAR  338 (436)
Q Consensus       259 e~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAi  338 (436)
                      +.+..|++-.-+..+  ........+..|..++..|+|.+|+.+|++|++.-+..    ..+.+.+++||...|+.++|+
T Consensus         8 ~A~~~~~~al~~~~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            8 QAVPYYEKAIASGLQ--GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH----QALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             CCHHHHHHHHSSCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHcCCC--CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHcCCHHHHH
Confidence            344555555543322  22345567888999999999999999999999987665    678899999999999999999


Q ss_pred             HHHHHHh-cCCC-HHHHH
Q 013807          339 IMYEKLQ-SHPN-ALVSK  354 (436)
Q Consensus       339 aLYkkL~-sHP~-~eVrK  354 (436)
                      ..|++.. .+|+ +.+..
T Consensus        82 ~~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHH
Confidence            9999975 4554 34433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.87  E-value=9.7e-05  Score=58.17  Aligned_cols=73  Identities=11%  Similarity=0.007  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCcc---chhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHH
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE---LHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVS  353 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~---LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVr  353 (436)
                      +.-|..|+.+|+.|+|..|+.+|+.|++.......   --..+-.+|+.||...|+.++|+.+|+++. -.|+-..-
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            45689999999999999999999999998865432   335788899999999999999999999985 67765433

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.81  E-value=0.0002  Score=53.06  Aligned_cols=83  Identities=16%  Similarity=0.053  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch---hHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHH
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRA  356 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQA  356 (436)
                      ...+..|..++..|+|.+|+.+|+++++..+......   ..+.+.++.+|...|+.++|+..|++.. .+|+..+....
T Consensus        39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l  118 (131)
T 1elr_A           39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC  118 (131)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            3457789999999999999999999999876543222   6778889999999999999999999985 67887777666


Q ss_pred             HHHHHHH
Q 013807          357 RQFMFSF  363 (436)
Q Consensus       357 krLlyiL  363 (436)
                      .++.-.+
T Consensus       119 ~~~~~~~  125 (131)
T 1elr_A          119 QQAEKIL  125 (131)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6554433

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.81  E-value=9.4e-05  Score=59.46  Aligned_cols=72  Identities=13%  Similarity=0.226  Sum_probs=57.2

Q ss_pred             cCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          271 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       271 ~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      .|||+.   ++.....|..+|..|+|.+|+.+|++|++.-+..    ..+-..++.||..+|+.++|+..|++.. .+|+
T Consensus         7 ~inP~~---a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   79 (126)
T 4gco_A            7 YINPEL---AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN----AILYSNRAACLTKLMEFQRALDDCDTCIRLDSK   79 (126)
T ss_dssp             CCCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence            366653   4456678999999999999999999999887655    3566778999999999999999999874 4554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.81  E-value=9.7e-05  Score=59.07  Aligned_cols=100  Identities=12%  Similarity=0.034  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCCh
Q 013807          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  334 (436)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  334 (436)
                      .+..+.+..|++-+  ..+|...   .-.+..|..++..|+|.+|+..|++|+.+-+...    .+.+.++.||...|+.
T Consensus        32 g~~~~A~~~~~~al--~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~  102 (142)
T 2xcb_A           32 GKWDDAQKIFQALC--MLDHYDA---RYFLGLGACRQSLGLYEQALQSYSYGALMDINEP----RFPFHAAECHLQLGDL  102 (142)
T ss_dssp             TCHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----HHHHHHHHHHHHTTCH
T ss_pred             ccHHHHHHHHHHHH--HhCCccH---HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCCH
Confidence            34455555555443  3344432   2356678999999999999999999998876554    4668899999999999


Q ss_pred             HHHHHHHHHHh-cCC----CHHHHHHHHHHHHHH
Q 013807          335 KEARIMYEKLQ-SHP----NALVSKRARQFMFSF  363 (436)
Q Consensus       335 ~EAiaLYkkL~-sHP----~~eVrKQAkrLlyiL  363 (436)
                      ++|+..|++.. .+|    ...+++++..++-.+
T Consensus       103 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l  136 (142)
T 2xcb_A          103 DGAESGFYSARALAAAQPAHEALAARAGAMLEAV  136 (142)
T ss_dssp             HHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence            99999999874 344    455666666665544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.81  E-value=3.9e-05  Score=62.11  Aligned_cols=68  Identities=16%  Similarity=0.151  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccC--------------ccchhHHHHHHHHHHHhcCChHHHHHHHHH
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK--------------SELHGLAALQWSICQDSLHRPKEARIMYEK  343 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~--------------S~LGGeaqLwLAiAydA~GR~~EAiaLYkk  343 (436)
                      ..++.....|..+|..|+|.+|+.+|++|+..++..              ......+.+.++.||-.+|+.++|+..|++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            455556666777777777777777777766663221              122334555566666666666666666666


Q ss_pred             Hh
Q 013807          344 LQ  345 (436)
Q Consensus       344 L~  345 (436)
                      ..
T Consensus        89 al   90 (162)
T 3rkv_A           89 VL   90 (162)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.80  E-value=0.00013  Score=59.93  Aligned_cols=102  Identities=13%  Similarity=0.003  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCC
Q 013807          254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  333 (436)
Q Consensus       254 ~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  333 (436)
                      ..+..+.+..|++-+  .++|....   ..+..|..++..|+|.+|+..|++|+.+-+...    .+.+.++.||...|+
T Consensus        34 ~g~~~~A~~~~~~al--~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~----~~~~~lg~~~~~~g~  104 (148)
T 2vgx_A           34 SGXYEDAHXVFQALC--VLDHYDSR---FFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP----RFPFHAAECLLQXGE  104 (148)
T ss_dssp             TTCHHHHHHHHHHHH--HHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTC
T ss_pred             cCChHHHHHHHHHHH--HcCcccHH---HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----hHHHHHHHHHHHcCC
Confidence            344556666666544  34454332   246779999999999999999999998876543    567889999999999


Q ss_pred             hHHHHHHHHHHh-cCCC----HHHHHHHHHHHHHHH
Q 013807          334 PKEARIMYEKLQ-SHPN----ALVSKRARQFMFSFQ  364 (436)
Q Consensus       334 ~~EAiaLYkkL~-sHP~----~eVrKQAkrLlyiLE  364 (436)
                      .++|+..|++.. ..|.    ..++.++..++-.++
T Consensus       105 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~  140 (148)
T 2vgx_A          105 LAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIK  140 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHH
Confidence            999999999875 4554    566777777766554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.80  E-value=6.6e-05  Score=64.50  Aligned_cols=71  Identities=10%  Similarity=0.072  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL  351 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e  351 (436)
                      ++..|..|..+|..|+|.+|+..|+++++.-+ .+...-++.++++.||...|+.++|+..|+++. .||.-.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~   75 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP   75 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence            35688999999999999999999999998654 456677899999999999999999999999985 688643

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.79  E-value=0.0001  Score=56.88  Aligned_cols=66  Identities=17%  Similarity=0.156  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ++..+..|..++..|+|.+|+.+|++|+..-+..    ..+...++.||-..|+.++|+..|++.. .+|+
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~   70 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN   70 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            4556667777777777777777777777766543    3566667777777777777777777764 3554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.78  E-value=0.00011  Score=55.96  Aligned_cols=68  Identities=12%  Similarity=0.064  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (436)
                      ..|..|..++..|+|.+|+.+|++++..-+ .+.....+.++++.||-..|+.++|+..|+++. .+|+.
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH   72 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence            367889999999999999999999998765 445556899999999999999999999999985 57764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.76  E-value=0.00056  Score=52.36  Aligned_cols=90  Identities=17%  Similarity=0.105  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCC
Q 013807          254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  333 (436)
Q Consensus       254 ~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  333 (436)
                      ..+..+.+..|++-..  ++|.........+..|..++..|+|.+|+.+|++++..-+..    ..+.+.++.||...|+
T Consensus        41 ~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~  114 (148)
T 2dba_A           41 CGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD----VKALYRRSQALEKLGR  114 (148)
T ss_dssp             TTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC----HHHHHHHHHHHHHHTC
T ss_pred             hCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC----HHHHHHHHHHHHHcCC
Confidence            3455667777777664  445544456667888999999999999999999999875543    5777889999999999


Q ss_pred             hHHHHHHHHHHh-cCCC
Q 013807          334 PKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       334 ~~EAiaLYkkL~-sHP~  349 (436)
                      .++|+..|++.. .+|+
T Consensus       115 ~~~A~~~~~~al~~~p~  131 (148)
T 2dba_A          115 LDQAVLDLQRCVSLEPK  131 (148)
T ss_dssp             HHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            999999999985 4664

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.73  E-value=0.00015  Score=57.99  Aligned_cols=64  Identities=11%  Similarity=-0.038  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      +.+......|..+|..|+|.+|+.+|++|+++-|..    ..+-..++.||-..|+.++|+..|++..
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~----~~~~~nlg~~~~~~~~~~~A~~~~~~al   69 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN----ITFYNNKAAVYFEEKKFAECVQFCEKAV   69 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence            344445567999999999999999999999987654    4567789999999999999999999874

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.70  E-value=0.0003  Score=57.63  Aligned_cols=85  Identities=11%  Similarity=0.045  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChH
Q 013807          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK  335 (436)
Q Consensus       256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~  335 (436)
                      .+.+.++.|.+..  ..+   .+.....|..|..++..|+|.+|+++|++|++.-|..    .++...++.||...|+.+
T Consensus        12 ~~e~ai~~~~~a~--~~~---p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A           12 DVERYIASVQGST--PSP---RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD----PKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             HHHHHHHHHHHHS--CSH---HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHHHhc--ccC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCchH
Confidence            3445666776655  222   3445557889999999999999999999999987654    567888999999999999


Q ss_pred             HHHHHHHHHh-cCCC
Q 013807          336 EARIMYEKLQ-SHPN  349 (436)
Q Consensus       336 EAiaLYkkL~-sHP~  349 (436)
                      +|+..|++.. .+|+
T Consensus        83 ~A~~~~~~al~~~p~   97 (150)
T 4ga2_A           83 KAVECYRRSVELNPT   97 (150)
T ss_dssp             HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCC
Confidence            9999999975 5775

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.66  E-value=0.00026  Score=51.25  Aligned_cols=66  Identities=20%  Similarity=0.169  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc-CChHHHHHHHHHHh-cCCC
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL-HRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~-GR~~EAiaLYkkL~-sHP~  349 (436)
                      ..+..|..++..|+|.+|+.+|++++...+.  .....+...++.||... |+.++|+..++++. .||+
T Consensus        42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           42 YWLMKGKALYNLERYEEAVDCYNYVINVIED--EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH  109 (112)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC--TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence            3577889999999999999999999887654  23457788899999999 99999999999986 5664

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.63  E-value=0.00023  Score=57.61  Aligned_cols=82  Identities=15%  Similarity=0.043  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCCh
Q 013807          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  334 (436)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  334 (436)
                      .+..+.+..|++-+  .++|..   ..-.+..|..++..|+|.+|+.+|++|+.+-+..    ..+.+.++.||...|+.
T Consensus        25 g~~~~A~~~~~~al--~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~   95 (164)
T 3sz7_A           25 KEYSKAIDLYTQAL--SIAPAN---PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY----SKAWSRLGLARFDMADY   95 (164)
T ss_dssp             TCHHHHHHHHHHHH--HHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHHHH--HhCCcC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCH
Confidence            34455555555444  333332   2234555666666666666666666666665432    45556666666667777


Q ss_pred             HHHHHHHHHHh
Q 013807          335 KEARIMYEKLQ  345 (436)
Q Consensus       335 ~EAiaLYkkL~  345 (436)
                      ++|+..|++..
T Consensus        96 ~~A~~~~~~al  106 (164)
T 3sz7_A           96 KGAKEAYEKGI  106 (164)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77766666653

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.63  E-value=0.00013  Score=54.02  Aligned_cols=64  Identities=19%  Similarity=0.169  Sum_probs=55.4

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhH-HHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGL-AALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGe-aqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (436)
                      .|..|..++..|+|.+|+..|+++++.-+..    .. +.++++.||...|+.++|+..|++.. .+|+-
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   68 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVG----KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS   68 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSST----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            4788999999999999999999999986544    34 78889999999999999999999985 56653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.61  E-value=0.001  Score=47.47  Aligned_cols=67  Identities=21%  Similarity=0.200  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (436)
                      ....+..|..++..|+|.+|+.+|+++++.-+..    ..+...++.||...|+.++|+..|++.. .+|+.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~   76 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN   76 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            3456778999999999999999999999886543    4677889999999999999999999985 56653

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.61  E-value=0.00082  Score=51.25  Aligned_cols=76  Identities=11%  Similarity=0.007  Sum_probs=60.6

Q ss_pred             HHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHH
Q 013807          261 LAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIM  340 (436)
Q Consensus       261 LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaL  340 (436)
                      +..|++-+  .++|..   ....+..|..++..|+|.+|+.+|++|+..-+..    ..+.+.|+.||...|+.++|+..
T Consensus         5 ~~~~~~al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~   75 (115)
T 2kat_A            5 TERLEAML--AQGTDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY----SVAWKWLGKTLQGQGDRAGARQA   75 (115)
T ss_dssp             HHHHHHHH--TTTCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHH--HhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHcCCHHHHHHH
Confidence            34444443  344443   2357788999999999999999999999886543    56788999999999999999999


Q ss_pred             HHHHh
Q 013807          341 YEKLQ  345 (436)
Q Consensus       341 YkkL~  345 (436)
                      |++..
T Consensus        76 ~~~al   80 (115)
T 2kat_A           76 WESGL   80 (115)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99985

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.60  E-value=0.00028  Score=60.96  Aligned_cols=69  Identities=14%  Similarity=0.107  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ++..|..|..+|..|+|.+|+..|+++++.-+ .+....++.++++.||-..|+.++|+..|+++. .+|.
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~   84 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI   84 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC
Confidence            45689999999999999999999999998765 445668999999999999999999999999996 5774

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.53  E-value=0.00038  Score=50.68  Aligned_cols=66  Identities=14%  Similarity=0.114  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ++..+..|..++..|+|.+|+.+|++++..-+..    ..+.+.++.||-..|+.++|+..|++.. .+|.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   70 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD   70 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence            4455666777777777777777777776665432    4455666777777777777777777664 3443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.50  E-value=0.00031  Score=59.48  Aligned_cols=68  Identities=10%  Similarity=0.061  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ...+..+..|..++..|+|.+|+.+|++|+++-|.+    ..+-+.|+.||...||.++|+..|++.. -.|+
T Consensus        34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~----~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~  102 (151)
T 3gyz_A           34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN----VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN  102 (151)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence            345568999999999999999999999999987654    4466779999999999999999999985 4664

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.49  E-value=0.001  Score=57.07  Aligned_cols=65  Identities=8%  Similarity=0.006  Sum_probs=57.0

Q ss_pred             HHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      +..|..++.+|+|.+|+..|+++++.-|. +....++...++.||..+|+.++|+..+++|. .+|.
T Consensus       151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          151 YSVAEYYTERGAWVAVVNRVEGMLRDYPD-TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHCcC-CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence            67899999999999999999999988765 44556899999999999999999999999996 4443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.48  E-value=0.00044  Score=51.75  Aligned_cols=63  Identities=13%  Similarity=0.105  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      .....+..|..++..|+|.+|+.+|++++..-+..    ..+...++.||...|+.++|+.+|++..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~   77 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALKDCEECI   77 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC----HHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            34445556666666666666666666666554322    4555566666666666666666666653

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.48  E-value=0.00059  Score=54.47  Aligned_cols=73  Identities=16%  Similarity=0.129  Sum_probs=60.4

Q ss_pred             CcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013807          270 LNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP  348 (436)
Q Consensus       270 l~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP  348 (436)
                      +.++|..   .+..+..|..++..|+|.+|+.+|++++..-+.+    ..+.+.++.||...|+.++|+..|++.. ..|
T Consensus        11 l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p   83 (142)
T 2xcb_A           11 RGLSEDT---LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD----ARYFLGLGACRQSLGLYEQALQSYSYGALMDI   83 (142)
T ss_dssp             TTCCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HcCCHHH---HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            4555543   4557899999999999999999999999887654    4567789999999999999999999985 455


Q ss_pred             C
Q 013807          349 N  349 (436)
Q Consensus       349 ~  349 (436)
                      +
T Consensus        84 ~   84 (142)
T 2xcb_A           84 N   84 (142)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.48  E-value=0.00058  Score=50.60  Aligned_cols=63  Identities=14%  Similarity=0.032  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      .++..+..|..++..|+|.+|+.+|+++++..+..    ..+.+.++.||-..|+.++|+..|++..
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~   65 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEKAI   65 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            45667889999999999999999999999987543    4678889999999999999999999985

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.47  E-value=0.00057  Score=52.40  Aligned_cols=66  Identities=14%  Similarity=0.238  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ++..+..|..++..|+|.+|+.+|++++..-+..    ..+...++.||-..|+.++|+..|++.. .+|+
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~   75 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQ   75 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch
Confidence            3456777888888888888888888888776543    4567778888888888888888888775 4555

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.47  E-value=0.001  Score=50.91  Aligned_cols=70  Identities=17%  Similarity=0.206  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      .++..+..|..++..|+|.+|+++|+++++..+.. ..-..+.++++.||-..|+.++|+..|++.. .+|.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   97 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP-QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG   97 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence            35567889999999999999999999999876532 2236788889999999999999999999975 5664

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.46  E-value=0.00076  Score=52.57  Aligned_cols=57  Identities=11%  Similarity=-0.083  Sum_probs=26.9

Q ss_pred             HHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807          284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (436)
                      +..|..++..|+|.+|+.+|++++..-+..    ..+.+.++.||...|+.++|+..|++.
T Consensus        51 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a  107 (166)
T 1a17_A           51 GNRSLAYLRTECYGYALGDATRAIELDKKY----IKGYYRRAASNMALGKFRAALRDYETV  107 (166)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            334444555555555555555554443221    234444455555555555555555444

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.45  E-value=0.00056  Score=56.17  Aligned_cols=72  Identities=11%  Similarity=0.090  Sum_probs=59.6

Q ss_pred             cCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          271 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       271 ~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      .++|.   .....+..|..++..|+|.+|+.+|++++..-+.+    -.+...++.||...|+.++|+..|++.. ..|+
T Consensus        15 ~~~p~---~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   87 (148)
T 2vgx_A           15 EISSD---TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD----SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX   87 (148)
T ss_dssp             TCCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             cCCHh---hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            44554   34557889999999999999999999999887665    3556789999999999999999999985 4554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.45  E-value=0.00097  Score=51.30  Aligned_cols=86  Identities=13%  Similarity=0.045  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC
Q 013807          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  332 (436)
Q Consensus       253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  332 (436)
                      +..+..+.+..|.+-.  .++|..   ..-.+..|..++..|+|.+|+..|++|++.-+..    ..+.+.++.||...|
T Consensus        16 ~~~~~~~A~~~~~~al--~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~   86 (126)
T 3upv_A           16 TKSDWPNAVKAYTEMI--KRAPED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF----VRAYIRKATAQIAVK   86 (126)
T ss_dssp             HTTCHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT
T ss_pred             HhcCHHHHHHHHHHHH--HhCCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHh
Confidence            3445566677777654  444543   2446778999999999999999999999987654    567889999999999


Q ss_pred             ChHHHHHHHHHHh-cC
Q 013807          333 RPKEARIMYEKLQ-SH  347 (436)
Q Consensus       333 R~~EAiaLYkkL~-sH  347 (436)
                      +.++|+..|++.. .+
T Consensus        87 ~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           87 EYASALETLDAARTKD  102 (126)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            9999999999885 45

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.43  E-value=0.0011  Score=53.07  Aligned_cols=89  Identities=15%  Similarity=0.119  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC
Q 013807          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  332 (436)
Q Consensus       253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  332 (436)
                      +..+..+.+..|.+-.  .++|..-   ..-+..|..++..|+|.+|+..|++|+++-+..    ..+-+.++.||...|
T Consensus        25 ~~g~~~~A~~~~~~al--~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~~   95 (126)
T 4gco_A           25 KKGDYPTAMRHYNEAV--KRDPENA---ILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF----IKGYIRKAACLVAMR   95 (126)
T ss_dssp             HTTCHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHHHH--HhCCCCH---HHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHCC
Confidence            3456678888888765  5666543   346778999999999999999999999886554    567889999999999


Q ss_pred             ChHHHHHHHHHHh-cCCCH
Q 013807          333 RPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       333 R~~EAiaLYkkL~-sHP~~  350 (436)
                      +.++|+..|++.. -+|+-
T Consensus        96 ~~~~A~~~~~~al~l~P~~  114 (126)
T 4gco_A           96 EWSKAQRAYEDALQVDPSN  114 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHHHHCcCC
Confidence            9999999999985 57753

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.43  E-value=0.00024  Score=56.52  Aligned_cols=87  Identities=11%  Similarity=-0.005  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCC
Q 013807          254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  333 (436)
Q Consensus       254 ~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  333 (436)
                      ..+..+.+..|++-+  .++|..   .+..+..|..++..|++.+|+..|++|+++-|..    ..+.+.|+.||...|+
T Consensus        30 ~g~~~~A~~~~~~al--~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~----~~~~~~la~~~~~~g~  100 (121)
T 1hxi_A           30 LANLAEAALAFEAVC--QKEPER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTNEHN  100 (121)
T ss_dssp             TTCHHHHHHHHHHHH--HHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH--HHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCC
Confidence            334555555555444  334443   2335677888888888888888888888776654    3466778888888888


Q ss_pred             hHHHHHHHHHHh-cCCC
Q 013807          334 PKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       334 ~~EAiaLYkkL~-sHP~  349 (436)
                      .++|+..|+++. .+|.
T Consensus       101 ~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A          101 ANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHhCcC
Confidence            888888888764 4553

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.39  E-value=0.0031  Score=47.12  Aligned_cols=87  Identities=11%  Similarity=0.054  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCCh
Q 013807          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  334 (436)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  334 (436)
                      .+..+.+..|.+-.  .++|..   ....+..|..++..|+|.+|+.+|++++..-+.    ...+.+.++.||...|+.
T Consensus        30 ~~~~~A~~~~~~al--~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~~~~  100 (133)
T 2lni_A           30 GDYPQAMKHYTEAI--KRNPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT----FIKGYTRKAAALEAMKDY  100 (133)
T ss_dssp             TCSHHHHHHHHHHH--TTCTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHHHH--HcCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHHhhH
Confidence            34455566666554  334443   345678899999999999999999999987654    456788899999999999


Q ss_pred             HHHHHHHHHHh-cCCCH
Q 013807          335 KEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       335 ~EAiaLYkkL~-sHP~~  350 (436)
                      ++|+..|++.. .+|+.
T Consensus       101 ~~A~~~~~~~~~~~p~~  117 (133)
T 2lni_A          101 TKAMDVYQKALDLDSSC  117 (133)
T ss_dssp             HHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHHhCCCc
Confidence            99999999985 56653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.39  E-value=0.0014  Score=48.24  Aligned_cols=68  Identities=18%  Similarity=0.195  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ......+..|..++..|+|.+|+.+|++++..-+..    ..+...++.||-..|+.++|+..|++.. .+|.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   78 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN----AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA   78 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc
Confidence            445566777888888888888888888887765433    4566777888888888888888888774 4554

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.35  E-value=0.0014  Score=47.38  Aligned_cols=63  Identities=19%  Similarity=0.133  Sum_probs=54.6

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      .+..|..++..|+|.+|+.+|+++++.-+..    ..+.+.++.+|...|+.++|+..|++.. .+|.
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEE----SKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            3567899999999999999999999986543    4677889999999999999999999985 5665

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.35  E-value=0.00077  Score=56.19  Aligned_cols=72  Identities=14%  Similarity=0.205  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccc-h-----------hHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL-H-----------GLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L-G-----------GeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      ..++..+..|..++..|+|.+|+.+|++|+...+..... .           ..+..+++.||-..|+.++|+..|++..
T Consensus        36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  115 (198)
T 2fbn_A           36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL  115 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            456667788999999999999999999999887654411 1           2677889999999999999999999985


Q ss_pred             -cCCC
Q 013807          346 -SHPN  349 (436)
Q Consensus       346 -sHP~  349 (436)
                       .+|.
T Consensus       116 ~~~p~  120 (198)
T 2fbn_A          116 KIDKN  120 (198)
T ss_dssp             HHSTT
T ss_pred             HhCcc
Confidence             4664

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.34  E-value=0.00053  Score=58.53  Aligned_cols=67  Identities=12%  Similarity=0.259  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHH----------------HHHHHHhcCChHHHHHHHHH
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQ----------------WSICQDSLHRPKEARIMYEK  343 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLw----------------LAiAydA~GR~~EAiaLYkk  343 (436)
                      ++..+..|..++..|+|.+|+.+|++++..-|.+    .++.+|                ++.||...|+.++|+..|++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~   79 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR----TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE   79 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH----HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4568899999999999999999999999887654    346677                99999999999999999999


Q ss_pred             Hh-cCCCH
Q 013807          344 LQ-SHPNA  350 (436)
Q Consensus       344 L~-sHP~~  350 (436)
                      .. .+|+-
T Consensus        80 al~~~p~~   87 (208)
T 3urz_A           80 LLQKAPNN   87 (208)
T ss_dssp             HHHHCTTC
T ss_pred             HHHHCCCC
Confidence            85 67753

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.33  E-value=0.00046  Score=61.49  Aligned_cols=69  Identities=16%  Similarity=0.067  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccC-------c-cchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK-------S-ELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~-------S-~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      .+++...+..|..+|..|+|.+|+..|++|+++.+..       . ...-.+-..++.||..+||.+||+..|++..
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL   84 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   84 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3678889999999999999999999999999998872       1 0112367779999999999999999999875

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.33  E-value=0.00074  Score=53.67  Aligned_cols=65  Identities=22%  Similarity=0.208  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ...+..|..++..|+|.+|+..|++|++.-|..    .++.+.++.||...|+.++|+..|++.. ..|+
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~   83 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPER----EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK   83 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            346889999999999999999999999987654    5678889999999999999999999985 5664

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.32  E-value=0.0028  Score=51.24  Aligned_cols=70  Identities=13%  Similarity=0.152  Sum_probs=61.5

Q ss_pred             hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       276 ~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ....++..+..|..++..|+|.+|+.+|++|+++-+..    ..+.+.++.||-..|+.++|+..|++.. .+|+
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~   77 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN----PIYLSNRAAAYSASGQHEKAAEDAELATVVDPK   77 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            34567788999999999999999999999999987654    5678889999999999999999999985 5666

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.30  E-value=0.0018  Score=54.40  Aligned_cols=64  Identities=17%  Similarity=0.303  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcc-cCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMV-FKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~-~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ..+..|..++..|+|.+|+.+|+++++.-+ ...    .+..+++.||...|+.++|+..|++.. .+|+
T Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   74 (228)
T 4i17_A            9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS----VTAYNCGVCADNIKKYKEAADYFDIAIKKNYN   74 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc
Confidence            345556666666666666666666665554 222    445555666666666666666666553 3444

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.25  E-value=0.0016  Score=52.73  Aligned_cols=64  Identities=17%  Similarity=0.160  Sum_probs=54.9

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (436)
                      -+..|..++.+|+|.+|+.+|++|++.-|..    .++...++.||...|+.++|+..|+++. .+|+.
T Consensus         8 y~~lG~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~   72 (184)
T 3vtx_A            8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNN----VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS   72 (184)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh
Confidence            4678999999999999999999999886654    4678889999999999999999999985 56654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.23  E-value=0.0035  Score=45.45  Aligned_cols=65  Identities=17%  Similarity=0.062  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ...+..|..++..|+|.+|+.+|+++++.-+.    ...+...++.||...|+.++|+..|++.. .+|+
T Consensus        39 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~  104 (118)
T 1elw_A           39 VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD----WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN  104 (118)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            34677899999999999999999999998654    35778899999999999999999999985 5664

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.22  E-value=0.00066  Score=67.19  Aligned_cols=125  Identities=18%  Similarity=0.124  Sum_probs=84.2

Q ss_pred             ccccccCCC--------CCCccccCCC-------cccCCCCccC-----cHHHHHHHHHHHHHHHHHHHh----------
Q 013807          217 STWGVFPRP--------GNISKTFGGG-------RTIRPGDVLE-----TAEARAAKEERTRQLLAAYKK----------  266 (436)
Q Consensus       217 sTWGvFPRP--------~NISkayGGG-------R~IrpGe~lE-----teEEkaaR~~rtke~LaaYrk----------  266 (436)
                      ..+|+||..        .|....|.|+       |.|++|+++.     ...-..+|.+.++   ..|.-          
T Consensus       194 ~g~~l~~~~s~~NHsC~PN~~~~~~~~~~~~~a~r~I~~GeEl~isY~~~~~~~~~R~~~L~---~~~~F~C~C~~C~~~  270 (429)
T 3qwp_A          194 VGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLR---DQYCFECDCFRCQTQ  270 (429)
T ss_dssp             EEEEECTTGGGCEECSSCSEEEEEETTEEEEEECSCBCTTCEEEECCSCSSCCHHHHHHHHH---HHHCCCCCSHHHHHT
T ss_pred             ceEEEchhhHhhCcCCCCCeEEEEeCCEEEEEEeeeECCCCEEEEEecCCCCCHHHHHHHHh---ccCCeEeeCCCCCCC
Confidence            358888864        3777778877       7899999862     1111223333322   22210          


Q ss_pred             ---hcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc----ccCccchhHHHHHHHHHHHhcCChHHHHH
Q 013807          267 ---SVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM----VFKSELHGLAALQWSICQDSLHRPKEARI  339 (436)
Q Consensus       267 ---~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v----~~~S~LGGeaqLwLAiAydA~GR~~EAia  339 (436)
                         ..=+..++.....+++++..-..+...|+|.+|+++|+++++..    ......-..+--.|+.+|...|+.++|+.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~  350 (429)
T 3qwp_A          271 DKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALF  350 (429)
T ss_dssp             TTHHHHTCSCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cccccccccchhhhHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHH
Confidence               00022334445667888888899999999999999999998653    22222225677779999999999999999


Q ss_pred             HHHHH
Q 013807          340 MYEKL  344 (436)
Q Consensus       340 LYkkL  344 (436)
                      +|++.
T Consensus       351 ~~~~~  355 (429)
T 3qwp_A          351 YGTRT  355 (429)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99876

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.21  E-value=0.0045  Score=45.52  Aligned_cols=65  Identities=17%  Similarity=0.089  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ...+..|..++..|+|.+|+.+|++++..-+..    ..+.+.++.+|...|+.++|+..|++.. .+|+
T Consensus        47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  112 (131)
T 2vyi_A           47 VYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPD  112 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc
Confidence            346778999999999999999999999876543    5678889999999999999999999985 5664

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.21  E-value=0.0021  Score=55.19  Aligned_cols=86  Identities=19%  Similarity=0.122  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCCh
Q 013807          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  334 (436)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  334 (436)
                      .+..+.+..|++-.  .++|..-   ...+..|..++..|++.+|+..|++|++.-  .   ..++.+.++.||...|+.
T Consensus        98 g~~~~A~~~~~~al--~~~P~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~---~~~~~~~la~~~~~~g~~  167 (217)
T 2pl2_A           98 GYLEQALSVLKDAE--RVNPRYA---PLHLQRGLVYALLGERDKAEASLKQALALE--D---TPEIRSALAELYLSMGRL  167 (217)
T ss_dssp             HHHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHHHTCH
T ss_pred             cCHHHHHHHHHHHH--HhCcccH---HHHHHHHHHHHHcCChHHHHHHHHHHHhcc--c---chHHHHHHHHHHHHcCCH
Confidence            56677777777655  4455533   335778999999999999999999999876  2   356788999999999999


Q ss_pred             HHHHHHHHHHh-cCCCH
Q 013807          335 KEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       335 ~EAiaLYkkL~-sHP~~  350 (436)
                      ++|+..|+++. .+|+-
T Consensus       168 ~~A~~~~~~al~~~P~~  184 (217)
T 2pl2_A          168 DEALAQYAKALEQAPKD  184 (217)
T ss_dssp             HHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            99999999985 67764

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.16  E-value=0.008  Score=46.73  Aligned_cols=71  Identities=8%  Similarity=-0.020  Sum_probs=61.5

Q ss_pred             chHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          275 KLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       275 ~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      .....++..+..|..++..|+|.+|+.+|+++++.-+..    ..+.+.++.||-..|+.++|+..|++.. .+|.
T Consensus         8 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   79 (166)
T 1a17_A            8 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKK   79 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            344677888999999999999999999999999986554    6778889999999999999999999985 5664

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.14  E-value=0.0017  Score=52.55  Aligned_cols=63  Identities=17%  Similarity=0.059  Sum_probs=51.6

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCC
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPN  349 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~  349 (436)
                      .+..|..++..|+|.+|+..|+++++.-|..    ..+...++.||...|+.++|+..|++. +.+|+
T Consensus       110 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  173 (184)
T 3vtx_A          110 YYKLGLVYDSMGEHDKAIEAYEKTISIKPGF----IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK  173 (184)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHHhcchh----hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence            5567889999999999999999998886544    467788899999999999999999886 45653

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.14  E-value=0.0022  Score=49.11  Aligned_cols=84  Identities=12%  Similarity=0.075  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC
Q 013807          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  332 (436)
Q Consensus       253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  332 (436)
                      +..+..+.+..|++-+  .++|..   ....+..|..++..|+|.+|+.+|++|+..-+.    ...+.+.++.||...|
T Consensus        21 ~~~~~~~A~~~~~~al--~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~   91 (137)
T 3q49_B           21 VGRKYPEAAACYGRAI--TRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALELDGQ----SVKAHFFLGQCQLEME   91 (137)
T ss_dssp             HTTCHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTT
T ss_pred             HhCcHHHHHHHHHHHH--hhCcCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHHHh
Confidence            3344556666666544  334443   344677899999999999999999999998654    4568889999999999


Q ss_pred             ChHHHHHHHHHHh
Q 013807          333 RPKEARIMYEKLQ  345 (436)
Q Consensus       333 R~~EAiaLYkkL~  345 (436)
                      +.++|+..|++..
T Consensus        92 ~~~~A~~~~~~a~  104 (137)
T 3q49_B           92 SYDEAIANLQRAY  104 (137)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            9999999999985

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.13  E-value=0.003  Score=50.94  Aligned_cols=67  Identities=18%  Similarity=0.139  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (436)
                      +.-.+..|..++..|+|.+|+.+|++|+.+-+..    ..+-+.++.||..+|+.++|+..|++.. .+|+-
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~  130 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETN----EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA  130 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc----hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence            3456778999999999999999999999986543    5688899999999999999999999985 57763

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.12  E-value=0.0014  Score=55.46  Aligned_cols=64  Identities=11%  Similarity=-0.046  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc--cchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      ..+..|..++..|+|.+|+.+|+++++......  ..-..+...++.+|...|+.++|+..|++..
T Consensus        45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  110 (338)
T 3ro2_A           45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL  110 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            334445555555555555555555544432221  1223344445555555555555555555554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.11  E-value=0.007  Score=44.11  Aligned_cols=65  Identities=20%  Similarity=0.186  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (436)
                      ..+..|..++..|+|.+|+.+|++++...+..    ..+...++.+|...|+.++|+..|+++. .+|+.
T Consensus        45 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  110 (125)
T 1na0_A           45 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN  110 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            35566788888888888888888887765433    3556677888888888888888888774 45543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.10  E-value=0.0072  Score=50.30  Aligned_cols=75  Identities=13%  Similarity=0.009  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC-HHHHHHHHH
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN-ALVSKRARQ  358 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~-~eVrKQAkr  358 (436)
                      ...+..|..++..|+|.+|+.+|++|++.-+..    ..+.+.++.||...|+.++|+..|++.. .+|. ..+...-..
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  164 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN----VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL  164 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence            456678999999999999999999999986543    5788999999999999999999999985 5664 444443333


Q ss_pred             H
Q 013807          359 F  359 (436)
Q Consensus       359 L  359 (436)
                      +
T Consensus       165 ~  165 (198)
T 2fbn_A          165 C  165 (198)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.09  E-value=0.0033  Score=54.24  Aligned_cols=68  Identities=21%  Similarity=0.302  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ..+..|..++..|+|.+|+..|+++++..+....+...+.+.++.||...|+.++|+.+|++.. .+|+
T Consensus       236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  304 (359)
T 3ieg_A          236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD  304 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            3456688899999999999999999998888777767777788999999999999999999986 4663

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.09  E-value=0.0046  Score=52.72  Aligned_cols=74  Identities=16%  Similarity=0.106  Sum_probs=59.9

Q ss_pred             HHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHHH
Q 013807          284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFMF  361 (436)
Q Consensus       284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLly  361 (436)
                      +..|..++..|+|.+|+..|++|+++-|..    ..+.+.++.||...|+.++|+..|+++. .+|+-..-.-..-.+|
T Consensus        58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~  132 (208)
T 3urz_A           58 TELALAYKKNRNYDKAYLFYKELLQKAPNN----VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY  132 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            338999999999999999999999987654    4778899999999999999999999985 6886543333333333

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.06  E-value=0.0015  Score=58.87  Aligned_cols=65  Identities=12%  Similarity=0.033  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccC--ccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK--SELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~--S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      ...+..|..++..|+|.+|+.+|++|++.....  ...-..+...++.+|...|+.++|+..|++..
T Consensus        87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  153 (411)
T 4a1s_A           87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL  153 (411)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344455555555566666666666655544322  12223444555556666666666666666555

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.03  E-value=0.0025  Score=52.70  Aligned_cols=63  Identities=13%  Similarity=0.076  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      .+++..+..|..++..|+|.+|+.+|+++++.- .    ...+...++.||...|+.++|+..|+++.
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~   65 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K----DITYLNNRAAAEYEKGEYETAISTLNDAV   65 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C----CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c----cHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            567788999999999999999999999999886 2    25788899999999999999999999985

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.03  E-value=0.0057  Score=50.27  Aligned_cols=91  Identities=11%  Similarity=0.030  Sum_probs=63.9

Q ss_pred             HHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc------------cchhHHHHHH
Q 013807          257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS------------ELHGLAALQW  324 (436)
Q Consensus       257 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S------------~LGGeaqLwL  324 (436)
                      ..+.+..|++-.  .++|..   ....+..|..++..|+|.+|+.+|++|++..+.+.            .-...+...+
T Consensus        53 ~~~A~~~~~~al--~~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (213)
T 1hh8_A           53 MTEAEKAFTRSI--NRDKHL---AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI  127 (213)
T ss_dssp             HHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHH
T ss_pred             HHHHHHHHHHHH--HhCccc---hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHH
Confidence            344444554433  223332   33456778889999999999999999988776544            2235778889


Q ss_pred             HHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 013807          325 SICQDSLHRPKEARIMYEKLQ-SHPNALV  352 (436)
Q Consensus       325 AiAydA~GR~~EAiaLYkkL~-sHP~~eV  352 (436)
                      +.||...|+.++|+..|++.. .+|....
T Consensus       128 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~  156 (213)
T 1hh8_A          128 AFMYAKKEEWKKAEEQLALATSMKSEPRH  156 (213)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence            999999999999999998875 5676543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.02  E-value=0.0044  Score=45.19  Aligned_cols=66  Identities=21%  Similarity=0.205  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ....+..|..++..|+|.+|+.+|++++..-+..    ..+...++.||...|+.++|+.+|++.. .+|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~   75 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN   75 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc
Confidence            3446778999999999999999999999876533    4677889999999999999999999985 4553

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.00  E-value=0.0087  Score=58.24  Aligned_cols=77  Identities=12%  Similarity=-0.063  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHhCCch-hhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHH
Q 013807          281 EKALKDGDSLMDSGKL-KEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQ  358 (436)
Q Consensus       281 eea~~~Gk~AmerGkY-r~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkr  358 (436)
                      +..+..|..++..|+| .+|+.+|++|+++-+..    ..+...|+.||-..|+.++|+..|++.. ..|+..+...-..
T Consensus       103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~  178 (474)
T 4abn_A          103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSM  178 (474)
T ss_dssp             HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence            3456679999999999 99999999999986543    5788899999999999999999999985 6888544443333


Q ss_pred             HHH
Q 013807          359 FMF  361 (436)
Q Consensus       359 Lly  361 (436)
                      +++
T Consensus       179 ~~~  181 (474)
T 4abn_A          179 VLR  181 (474)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            333

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=96.99  E-value=0.0031  Score=47.70  Aligned_cols=68  Identities=13%  Similarity=-0.025  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc--cchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      ..+...+..|..++..|+|.+|+.+|+++++......  ..-+.+..+++.+|-..|+.++|+..|++..
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   76 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL   76 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4555677888899999999999999999988775432  2224577788999999999999999998864

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=96.98  E-value=0.0074  Score=49.83  Aligned_cols=98  Identities=12%  Similarity=0.076  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch---hHHHHHHHHHHHhcC
Q 013807          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLH  332 (436)
Q Consensus       256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~G  332 (436)
                      +..+.+..|++-..++ +.     ....+..|..++..|+|.+|+.+|+++++..+....-.   ..+...++.||...|
T Consensus        20 ~~~~A~~~~~~a~~~~-~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   93 (258)
T 3uq3_A           20 QFDEAIEHYNKAWELH-KD-----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG   93 (258)
T ss_dssp             CHHHHHHHHHHHHHHS-CC-----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHhh-cc-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc
Confidence            3445555555544333 11     23467789999999999999999999999876542222   688889999999999


Q ss_pred             ChHHHHHHHHHHh-cCCCHHHHHHHHHH
Q 013807          333 RPKEARIMYEKLQ-SHPNALVSKRARQF  359 (436)
Q Consensus       333 R~~EAiaLYkkL~-sHP~~eVrKQAkrL  359 (436)
                      +.++|+..|++.. .+|...+-.+..++
T Consensus        94 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~  121 (258)
T 3uq3_A           94 DLKKTIEYYQKSLTEHRTADILTKLRNA  121 (258)
T ss_dssp             CHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCchhHHHHHHhHH
Confidence            9999999999986 68887665554443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=96.95  E-value=0.0028  Score=58.18  Aligned_cols=81  Identities=12%  Similarity=0.086  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCCh
Q 013807          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  334 (436)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  334 (436)
                      .+..+.+..|++-.-+  +|.    ....+..|..++..|+|.+|+..|+++++.-+..    ..+.+.++.||...|+.
T Consensus        20 g~~~~A~~~~~~al~~--~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~   89 (514)
T 2gw1_A           20 KKYDDAIKYYNWALEL--KED----PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY----SKVLLRRASANEGLGKF   89 (514)
T ss_dssp             SCHHHHHHHHHHHHHH--CCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCH
T ss_pred             ccHHHHHHHHHHHHhc--Ccc----HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH----HHHHHHHHHHHHHHhhH
Confidence            3445555555555432  332    3345556666777777777777777766654432    25556667777777777


Q ss_pred             HHHHHHHHHHh
Q 013807          335 KEARIMYEKLQ  345 (436)
Q Consensus       335 ~EAiaLYkkL~  345 (436)
                      ++|+..|+++.
T Consensus        90 ~~A~~~~~~~~  100 (514)
T 2gw1_A           90 ADAMFDLSVLS  100 (514)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777777664

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=96.93  E-value=0.0023  Score=56.64  Aligned_cols=89  Identities=10%  Similarity=-0.016  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHhhcCCcCCcchH-HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc--cchhHHHHHHHHHHHhc
Q 013807          255 ERTRQLLAAYKKSVGLNVDPKLK-SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSL  331 (436)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vdp~~k-~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~  331 (436)
                      .+..+.+..|++-..+  +|... ..+...+..|..++..|+|.+|+.+|++|++......  ..-..+...++.+|...
T Consensus        23 g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  100 (406)
T 3sf4_A           23 GDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL  100 (406)
T ss_dssp             TCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc
Confidence            3445555666554432  34322 2344555666666777777777777777666554322  22245555666677777


Q ss_pred             CChHHHHHHHHHHh
Q 013807          332 HRPKEARIMYEKLQ  345 (436)
Q Consensus       332 GR~~EAiaLYkkL~  345 (436)
                      |+.++|+..|++..
T Consensus       101 g~~~~A~~~~~~al  114 (406)
T 3sf4_A          101 GNFDEAIVCCQRHL  114 (406)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            77777777776666

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.90  E-value=0.0045  Score=55.79  Aligned_cols=71  Identities=17%  Similarity=0.204  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHH
Q 013807          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVS  353 (436)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVr  353 (436)
                      ..+..+..|..++..|++.+|+..|+++++.-|.+    ..+.+.|+.+|-..||.++|+.+|+++. .+|+....
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~  187 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN----GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ  187 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc----hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH
Confidence            34567899999999999999999999999988765    4788899999999999999999999995 68876544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.89  E-value=0.0023  Score=61.15  Aligned_cols=55  Identities=11%  Similarity=-0.030  Sum_probs=24.5

Q ss_pred             HHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807          286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (436)
                      .|..++..|+|.+|+.+|++|+++-+.    ...+.+.++.||..+|+.++|+..|++.
T Consensus       279 la~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~eA~~~l~~A  333 (370)
T 1ihg_A          279 IGACKLKMSDWQGAVDSCLEALEIDPS----NTKALYRRAQGWQGLKEYDQALADLKKA  333 (370)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            344444444444444444444443322    1233444444444444444444444443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=96.87  E-value=0.0054  Score=58.85  Aligned_cols=95  Identities=16%  Similarity=0.088  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHh
Q 013807          251 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS  330 (436)
Q Consensus       251 aaR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA  330 (436)
                      ..+.+|..+.+..+++.... .|+.  ....-.|-.|..+-..|++.+|+.+|++|...- ..-..--++++++++||..
T Consensus       145 ~~~~~r~~dA~~~l~~a~~~-~d~~--~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~  220 (282)
T 4f3v_A          145 YGAAERWTDVIDQVKSAGKW-PDKF--LAGAAGVAHGVAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRS  220 (282)
T ss_dssp             HHHTTCHHHHHHHHTTGGGC-SCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHhhcc-CCcc--cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHH
Confidence            45556677777777644322 2333  233456888999999999999999999997321 0011256799999999999


Q ss_pred             cCChHHHHHHHHHHh-cCCC
Q 013807          331 LHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       331 ~GR~~EAiaLYkkL~-sHP~  349 (436)
                      .||.+||+++|+++. .+|.
T Consensus       221 lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          221 QGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HTCHHHHHHHHHHHHHHSCC
T ss_pred             cCCHHHHHHHHHHHHhcCCc
Confidence            999999999999996 7998

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=96.87  E-value=0.003  Score=53.37  Aligned_cols=61  Identities=10%  Similarity=-0.074  Sum_probs=33.9

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (436)
                      .+..|..++..|+|.+|+.+|+++++ .+.+..+-+.+-+.++.||...|+.++|+..|++.
T Consensus        40 ~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  100 (272)
T 3u4t_A           40 YNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAA  100 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            34445555556666666666666555 44444444555555555555555555555555555

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=96.87  E-value=0.0038  Score=56.29  Aligned_cols=83  Identities=12%  Similarity=0.069  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCC
Q 013807          254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  333 (436)
Q Consensus       254 ~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  333 (436)
                      ..+..+.+..|++-+  ..+|.   .....+..|..++..|+|.+|+..|++|+++-+..    ..+...++.+|...|+
T Consensus        17 ~g~~~~A~~~~~~al--~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~   87 (281)
T 2c2l_A           17 GRKYPEAAACYGRAI--TRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS----VKAHFFLGQCQLEMES   87 (281)
T ss_dssp             TTCHHHHHHHHHHHH--HHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC----HHHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHHH--HhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCC
Confidence            344555666666544  22332   24455666778888888888888888887765433    3566777888888888


Q ss_pred             hHHHHHHHHHHh
Q 013807          334 PKEARIMYEKLQ  345 (436)
Q Consensus       334 ~~EAiaLYkkL~  345 (436)
                      .++|+..|++..
T Consensus        88 ~~~A~~~~~~al   99 (281)
T 2c2l_A           88 YDEAIANLQRAY   99 (281)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888887753

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=96.87  E-value=0.00069  Score=58.17  Aligned_cols=85  Identities=18%  Similarity=0.146  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCCh
Q 013807          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  334 (436)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  334 (436)
                      .+..+.+..|++-.-++ +     ..+-.+..|..++..|+|.+|+..|+++++.-|..    ..+.+.++.+|...|+.
T Consensus       132 g~~~~A~~~~~~al~~~-~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~~~~~g~~  201 (217)
T 2pl2_A          132 GERDKAEASLKQALALE-D-----TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD----LDLRVRYASALLLKGKA  201 (217)
T ss_dssp             TCHHHHHHHHHHHHHHC-C-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHTC----
T ss_pred             CChHHHHHHHHHHHhcc-c-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHccCH
Confidence            34455666666655444 2     12345788999999999999999999999987654    36778899999999999


Q ss_pred             HHHHHHHHHHhcCCC
Q 013807          335 KEARIMYEKLQSHPN  349 (436)
Q Consensus       335 ~EAiaLYkkL~sHP~  349 (436)
                      ++|+..|++.-.|-+
T Consensus       202 ~~A~~~~~~~~~~~~  216 (217)
T 2pl2_A          202 EEAARAAALEHHHHH  216 (217)
T ss_dssp             ---------------
T ss_pred             HHHHHHHHHHhhccC
Confidence            999999999987643

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=96.85  E-value=0.012  Score=49.34  Aligned_cols=62  Identities=8%  Similarity=-0.111  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      ....+..|..++..|+|.+|+.+|+++++.-+.    ...+...++.+|-..|+.++|+.+|++..
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al  104 (275)
T 1xnf_A           43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPD----MPEVFNYLGIYLTQAGNFDAAYEAFDSVL  104 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            344455566666666666666666666555432    23344555555555555555555555553

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=96.82  E-value=0.0088  Score=49.71  Aligned_cols=69  Identities=12%  Similarity=0.037  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcc----cCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV----FKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS  346 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~----~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s  346 (436)
                      ..+...+..|..++..|+|.+|+.+|++|++...    ........+...++.||...|+.++|+.+|++...
T Consensus        83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  155 (283)
T 3edt_B           83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE  155 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4556677889999999999999999999988752    22345577888899999999999999999999854

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=96.81  E-value=0.013  Score=49.22  Aligned_cols=68  Identities=7%  Similarity=0.009  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch---hHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ..+..|..++..|+|.+|+..|+++++.-+.+..+.   +.+-+.++.||...|+.++|+..|++.. .+|+
T Consensus        78 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  149 (228)
T 4i17_A           78 AYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK  149 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence            355667777888888888888888877776554331   3456667777888888888888887775 4665

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.81  E-value=0.0037  Score=55.63  Aligned_cols=92  Identities=16%  Similarity=0.134  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCcCCcc-------hH--HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch---hH
Q 013807          252 AKEERTRQLLAAYKKSVGLNVDPK-------LK--SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GL  319 (436)
Q Consensus       252 aR~~rtke~LaaYrk~~Gl~Vdp~-------~k--~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---Ge  319 (436)
                      .+..+..+.+..|++-..+  +|.       ..  .....-+..|..+...|+|.+|+..|++|+++.+...++.   +.
T Consensus        22 ~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~   99 (159)
T 2hr2_A           22 LVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   99 (159)
T ss_dssp             HHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHH
Confidence            3456778889999987744  443       11  1223566779999999999999999999999833333333   44


Q ss_pred             HH----HHHHHHHHhcCChHHHHHHHHHHh
Q 013807          320 AA----LQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       320 aq----LwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      +-    ..++.||..+||.+||+.-|++..
T Consensus       100 A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A          100 LWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence            55    678999999999999999999874

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=96.80  E-value=0.0046  Score=53.32  Aligned_cols=86  Identities=23%  Similarity=0.220  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCC
Q 013807          254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  333 (436)
Q Consensus       254 ~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  333 (436)
                      ..+..+.+..|++-..  .+|.   .....+..|..++..|+|.+|+.+|+++++.-+..    ..+...++.||...|+
T Consensus        16 ~g~~~~A~~~~~~~l~--~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~   86 (359)
T 3ieg_A           16 AGQLADALSQFHAAVD--GDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF----TAARLQRGHLLLKQGK   86 (359)
T ss_dssp             TTCHHHHHHHHHHHHH--HCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHHHHh--hCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----chHHHHHHHHHHHcCC
Confidence            3445566666665542  2332   25566777888888888888888888888775433    3677788888888888


Q ss_pred             hHHHHHHHHHHh-cCC
Q 013807          334 PKEARIMYEKLQ-SHP  348 (436)
Q Consensus       334 ~~EAiaLYkkL~-sHP  348 (436)
                      .++|+..|+++. .+|
T Consensus        87 ~~~A~~~~~~~~~~~~  102 (359)
T 3ieg_A           87 LDEAEDDFKKVLKSNP  102 (359)
T ss_dssp             HHHHHHHHHHHHTSCC
T ss_pred             hHHHHHHHHHHHhcCC
Confidence            888888888885 466

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=96.77  E-value=0.0038  Score=58.00  Aligned_cols=71  Identities=21%  Similarity=0.281  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch-----------hHHHHHHHHHHHhcCChHHHHHHHHHHh-c
Q 013807          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-----------GLAALQWSICQDSLHRPKEARIMYEKLQ-S  346 (436)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG-----------GeaqLwLAiAydA~GR~~EAiaLYkkL~-s  346 (436)
                      .+...+..|..++..|+|.+|+.+|++|+.+.+....+.           ..+.+.++.||-..|+.++|+..|++.. .
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            445566778888888888888888888888877653222           3566778888888888888888888774 4


Q ss_pred             CCC
Q 013807          347 HPN  349 (436)
Q Consensus       347 HP~  349 (436)
                      +|+
T Consensus       226 ~p~  228 (336)
T 1p5q_A          226 DSN  228 (336)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=96.76  E-value=0.0037  Score=56.88  Aligned_cols=65  Identities=22%  Similarity=0.309  Sum_probs=39.7

Q ss_pred             HHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH-hcCC
Q 013807          284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHP  348 (436)
Q Consensus       284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP  348 (436)
                      +..|..++..|+|.+|+.+|+++++..+....+-.++...++.||...|+.++|+.+|++. ..+|
T Consensus       261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p  326 (450)
T 2y4t_A          261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP  326 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            4446666677777777777777666555444333455555666666666666666666664 3455

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=96.76  E-value=0.0096  Score=49.51  Aligned_cols=86  Identities=14%  Similarity=0.042  Sum_probs=65.2

Q ss_pred             HHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcc----cCccchhHHHHHHHHHHHhcC
Q 013807          257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV----FKSELHGLAALQWSICQDSLH  332 (436)
Q Consensus       257 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~----~~S~LGGeaqLwLAiAydA~G  332 (436)
                      .++.|.-+++-.+.+    ....+...+..|..++..|+|.+|+.+|++|++...    .....-..+...++.||-..|
T Consensus        24 ~~~al~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g   99 (283)
T 3edt_B           24 CKQALEDLEKTSGHD----HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG   99 (283)
T ss_dssp             HHHHHHHHHHHHCSS----SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc
Confidence            344455554443321    234566678899999999999999999999988752    223455778888999999999


Q ss_pred             ChHHHHHHHHHHhc
Q 013807          333 RPKEARIMYEKLQS  346 (436)
Q Consensus       333 R~~EAiaLYkkL~s  346 (436)
                      +.++|+.+|++...
T Consensus       100 ~~~~A~~~~~~al~  113 (283)
T 3edt_B          100 KYKEAEPLCKRALE  113 (283)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH
Confidence            99999999999853

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=96.76  E-value=0.0037  Score=58.10  Aligned_cols=68  Identities=13%  Similarity=0.148  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ..++..+..|..++..|+|.+|+.+|++++..-+..    ..+...++.||-..|+.++|+..|+++. .+|+
T Consensus        23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~   91 (537)
T 3fp2_A           23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE----PVFYSNISACYISTGDLEKVIEFTTKALEIKPD   91 (537)
T ss_dssp             HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            345556666666666666666666666666655433    2455556666666666666666666653 3444

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=96.76  E-value=0.0028  Score=52.13  Aligned_cols=68  Identities=16%  Similarity=0.202  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV  352 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV  352 (436)
                      +..+..|..++..|+|.+|+..|+++++.-|.+    ..+.+.++.+|...|+.++|+.+|+++. .+|++.+
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~   75 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSR----GDVKLAKADCLLETKQFELAQELLATIPLEYQDNSY   75 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS----HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHH
Confidence            457888999999999999999999999877654    5678889999999999999999999985 5665544

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.75  E-value=0.0034  Score=61.07  Aligned_cols=60  Identities=12%  Similarity=0.031  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      ..+..|..++..|+|.+|+.+|++|+++-+.+    -.+.+.++.||-.+|+.++|+..|++..
T Consensus       319 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~~g~a~~~~g~~~~A~~~~~~al  378 (457)
T 1kt0_A          319 AFLNLAMCYLKLREYTKAVECCDKALGLDSAN----EKGLYRRGEAQLLMNEFESAKGDFEKVL  378 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            34455666666666666666666666655433    3455566666666666666666666653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.74  E-value=0.0083  Score=57.31  Aligned_cols=61  Identities=15%  Similarity=0.095  Sum_probs=51.3

Q ss_pred             HHHhCCchhhhhhHHHHHHhhccc------------CccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          289 SLMDSGKLKEALPFYEKVMNKMVF------------KSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       289 ~AmerGkYr~AV~~lEkA~~~v~~------------~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      .++..|+|.+|+.+|++|+..++.            ....-..+.+.++.||-..|+.++|+..|++.. .+|+
T Consensus       232 ~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~  305 (370)
T 1ihg_A          232 TFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  305 (370)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence            467889999999999999986544            345567888899999999999999999999986 5675

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=96.73  E-value=0.0058  Score=46.15  Aligned_cols=69  Identities=13%  Similarity=0.032  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc--cchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      ...+...+..|..++..|+|.+|+.+|+++++......  ..-+.+...++.+|...|+.++|+..|++..
T Consensus        46 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  116 (164)
T 3ro3_A           46 AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL  116 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34455677889999999999999999999998875432  2225677889999999999999999999874

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=96.73  E-value=0.0054  Score=55.38  Aligned_cols=82  Identities=15%  Similarity=-0.025  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch--hHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHH
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--GLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKR  355 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG--GeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQ  355 (436)
                      ..+...+..|..++..|+|.+|+.+|++|++..+......  +.+.+.++.||-..|+.++|+..|++...+|.-.-...
T Consensus       153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e  232 (307)
T 2ifu_A          153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSED  232 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHH
Confidence            3455667889999999999999999999999876554333  34566788899999999999999999775554333334


Q ss_pred             HHHH
Q 013807          356 ARQF  359 (436)
Q Consensus       356 AkrL  359 (436)
                      ++.+
T Consensus       233 ~~~l  236 (307)
T 2ifu_A          233 CAAL  236 (307)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4333

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=96.73  E-value=0.012  Score=54.66  Aligned_cols=93  Identities=16%  Similarity=0.072  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHhhcCCcCCcc----------hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHH
Q 013807          254 EERTRQLLAAYKKSVGLNVDPK----------LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQ  323 (436)
Q Consensus       254 ~~rtke~LaaYrk~~Gl~Vdp~----------~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLw  323 (436)
                      ..+..+.+..|++-+.++-+..          ....+...+..|..++..|+|.+|+.+|++|+++-+.+    ..+.+.
T Consensus       160 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~  235 (336)
T 1p5q_A          160 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN----EKGLSR  235 (336)
T ss_dssp             HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHH
Confidence            3455677777877664433321          01124556778999999999999999999999987654    467889


Q ss_pred             HHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807          324 WSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       324 LAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (436)
                      ++.||..+|+.++|+..|++.. .+|+-
T Consensus       236 lg~~~~~~g~~~~A~~~~~~al~l~P~~  263 (336)
T 1p5q_A          236 RGEAHLAVNDFELARADFQKVLQLYPNN  263 (336)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence            9999999999999999999985 57753

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.73  E-value=0.0089  Score=53.12  Aligned_cols=67  Identities=12%  Similarity=0.085  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhh---cccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNK---MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~---v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      .+...+..|..++..|+|.+|+.+|++|++.   .+....+...+...++.||...|+.++|+..|++..
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal  223 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence            4445566788888888888888888888743   333333334677778888888888888888887754

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.72  E-value=0.0061  Score=51.80  Aligned_cols=71  Identities=7%  Similarity=0.052  Sum_probs=60.4

Q ss_pred             chHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc----CccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          275 KLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF----KSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       275 ~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~----~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      .....++..+..|..++..|+|.+|+.+|+++++....    ....-..+...++.+|-..|+.++|+.+|++..
T Consensus        22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al   96 (311)
T 3nf1_A           22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL   96 (311)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34456677889999999999999999999999987543    345567888899999999999999999999875

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.71  E-value=0.0028  Score=59.06  Aligned_cols=72  Identities=26%  Similarity=0.276  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCcc--chh-----------HHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE--LHG-----------LAALQWSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~--LGG-----------eaqLwLAiAydA~GR~~EAiaLYkkL  344 (436)
                      ..++..+..|..++..|+|.+|+.+|++|+...+....  .-|           .+.+.++.||-..|+.++|+..|++.
T Consensus       177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a  256 (338)
T 2if4_A          177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV  256 (338)
T ss_dssp             HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45666788999999999999999999999988765431  112           27788999999999999999999987


Q ss_pred             h-cCCC
Q 013807          345 Q-SHPN  349 (436)
Q Consensus       345 ~-sHP~  349 (436)
                      . .+|+
T Consensus       257 l~~~p~  262 (338)
T 2if4_A          257 LTEEEK  262 (338)
T ss_dssp             HHHCTT
T ss_pred             HHhCCC
Confidence            4 5664

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=96.70  E-value=0.0078  Score=49.47  Aligned_cols=84  Identities=13%  Similarity=0.069  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCC
Q 013807          254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  333 (436)
Q Consensus       254 ~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  333 (436)
                      ..+..+.+..|++-.    ++    .....+..|..++..|+|.+|+.+|++|+..-+..    ..+.+.++.||-..|+
T Consensus        19 ~~~~~~A~~~~~~a~----~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~lg~~~~~~~~   86 (213)
T 1hh8_A           19 KKDWKGALDAFSAVQ----DP----HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----AVAYFQRGMLYYQTEK   86 (213)
T ss_dssp             TTCHHHHHHHHHTSS----SC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTC
T ss_pred             hCCHHHHHHHHHHHc----CC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHccc
Confidence            345566777777552    33    23467888999999999999999999999886543    4677889999999999


Q ss_pred             hHHHHHHHHHHh-cCCC
Q 013807          334 PKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       334 ~~EAiaLYkkL~-sHP~  349 (436)
                      .++|+..|++.. .+|.
T Consensus        87 ~~~A~~~~~~al~~~~~  103 (213)
T 1hh8_A           87 YDLAIKDLKEALIQLRG  103 (213)
T ss_dssp             HHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHhCCC
Confidence            999999999985 3443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=96.70  E-value=0.0035  Score=52.96  Aligned_cols=63  Identities=17%  Similarity=0.169  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHP  348 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP  348 (436)
                      ..+..|..++..|+|.+|+.+|+++++.-+...    .+.+.++.||-..|+.++|+..|+++...|
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~   67 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP----YIYNRRAVCYYELAKYDLAQKDIETYFSKV   67 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS----TTHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcc
Confidence            467889999999999999999999998876543    467788999999999999999999997644

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=96.67  E-value=0.0083  Score=46.62  Aligned_cols=63  Identities=22%  Similarity=0.171  Sum_probs=46.1

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      .+..|..++..|++.+|+.+|++++...+..    ..+.+.++.+|...|+.++|+.+|+++. .+|.
T Consensus        79 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~  142 (186)
T 3as5_A           79 ATVLGLTYVQVQKYDLAVPLLIKVAEANPIN----FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN  142 (186)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc
Confidence            4566777888888888888888887775432    4566777888888888888888888764 4443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=96.64  E-value=0.013  Score=47.28  Aligned_cols=58  Identities=12%  Similarity=0.071  Sum_probs=30.9

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (436)
                      .+..|..++..|++.+|+.+|+++++..+..    ..+...++.||...|+.++|+..|++.
T Consensus       116 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~  173 (225)
T 2vq2_A          116 NLNKGICSAKQGQFGLAEAYLKRSLAAQPQF----PPAFKELARTKMLAGQLGDADYYFKKY  173 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----chHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3445555555555555555555555543322    344445555555555555555555554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=96.63  E-value=0.02  Score=46.20  Aligned_cols=63  Identities=10%  Similarity=-0.018  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc-CChHHHHHHHHHHhc
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL-HRPKEARIMYEKLQS  346 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~-GR~~EAiaLYkkL~s  346 (436)
                      ....+..|..++..|++.+|+.+|+++++..+..    ..+...++.+|-.. |+.++|+.+|+++..
T Consensus        42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~  105 (225)
T 2vq2_A           42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS----AEINNNYGWFLCGRLNRPAESMAYFDKALA  105 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence            3344555777777777777777777777765432    34566677777777 777777777777754

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.62  E-value=0.009  Score=53.54  Aligned_cols=77  Identities=19%  Similarity=0.130  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch-h--HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHH
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-G--LAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKR  355 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG-G--eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQ  355 (436)
                      ....+..|..++..|+|.+|+.+|++|++..+...... +  .+.+.++.||...|+.++|+..|++.. -+|.-.-...
T Consensus       158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  237 (292)
T 1qqe_A          158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE  237 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence            44566779999999999999999999999887665442 3  356778999999999999999999986 4665443333


Q ss_pred             H
Q 013807          356 A  356 (436)
Q Consensus       356 A  356 (436)
                      +
T Consensus       238 ~  238 (292)
T 1qqe_A          238 S  238 (292)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=96.60  E-value=0.013  Score=42.75  Aligned_cols=64  Identities=19%  Similarity=0.168  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ..+..|..++..|++.+|+.+|++++..-+..    ..+.+.++.+|-..|+.++|+.+|+++. .+|.
T Consensus        37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  101 (136)
T 2fo7_A           37 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  101 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            34556888888888888888888888765432    4566678888888888888888888874 4553

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=96.59  E-value=0.03  Score=46.89  Aligned_cols=86  Identities=13%  Similarity=0.028  Sum_probs=62.8

Q ss_pred             HHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHH
Q 013807          257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE  336 (436)
Q Consensus       257 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E  336 (436)
                      ..+.+..|++-.....+|.   .....+..|..++..|++.+|+.+|+++++.-+..    ..+.+.++.+|...|+.++
T Consensus       121 ~~~A~~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          121 YEEAYQRLLEASQDTLYPE---RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ----PSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHHHHHHHHHTTCTTCTT---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhCccCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHH
Confidence            3444445554433112332   33456778999999999999999999999876543    5677889999999999999


Q ss_pred             HHHHHHHHh-cCCC
Q 013807          337 ARIMYEKLQ-SHPN  349 (436)
Q Consensus       337 AiaLYkkL~-sHP~  349 (436)
                      |+..|+++. .+|.
T Consensus       194 A~~~~~~~~~~~~~  207 (252)
T 2ho1_A          194 ARQYYDLFAQGGGQ  207 (252)
T ss_dssp             HHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHhCcC
Confidence            999999985 4553

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=96.58  E-value=0.018  Score=44.76  Aligned_cols=86  Identities=14%  Similarity=0.115  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCCh
Q 013807          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  334 (436)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  334 (436)
                      .+..+.+..|++-.  ..+|..   ....+..|..++..|++.+|+.+|+++++..+..    ..+.+.++.+|...|+.
T Consensus        22 ~~~~~A~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~   92 (186)
T 3as5_A           22 GRYSQAVMLLEQVY--DADAFD---VDVALHLGIAYVKTGAVDRGTELLERSLADAPDN----VKVATVLGLTYVQVQKY   92 (186)
T ss_dssp             TCHHHHHHHHTTTC--CTTSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCH
T ss_pred             cCHHHHHHHHHHHH--HhCccC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCH
Confidence            34556666666544  444443   3446778999999999999999999999885433    46778889999999999


Q ss_pred             HHHHHHHHHHh-cCCC
Q 013807          335 KEARIMYEKLQ-SHPN  349 (436)
Q Consensus       335 ~EAiaLYkkL~-sHP~  349 (436)
                      ++|+.+|+++. .+|.
T Consensus        93 ~~A~~~~~~~~~~~~~  108 (186)
T 3as5_A           93 DLAVPLLIKVAEANPI  108 (186)
T ss_dssp             HHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhcCcH
Confidence            99999999985 4654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=96.54  E-value=0.013  Score=49.11  Aligned_cols=60  Identities=12%  Similarity=-0.115  Sum_probs=40.9

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS  346 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s  346 (436)
                      .+..|..++..|++.+|+.+|+++++.-+..    ..+.+.++.+|...|+.++|+.+|+++..
T Consensus        74 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~  133 (252)
T 2ho1_A           74 HAALAVVFQTEMEPKLADEEYRKALASDSRN----ARVLNNYGGFLYEQKRYEEAYQRLLEASQ  133 (252)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            3445677777777777777777777665432    45666677777777777777777777754

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.51  E-value=0.017  Score=48.99  Aligned_cols=68  Identities=13%  Similarity=0.143  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccC----ccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK----SELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~----S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      ..+...+..|..++..|+|.+|+.+|+++++.....    ...-..+...++.||...|+.++|+.+|++..
T Consensus       151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  222 (311)
T 3nf1_A          151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL  222 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            455667788999999999999999999999875332    44556788889999999999999999999885

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=96.48  E-value=0.012  Score=52.49  Aligned_cols=58  Identities=17%  Similarity=0.150  Sum_probs=30.5

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (436)
                      .+..|..++..|+|.+|+.+|+++++.-+..    ..+...++.||...|+.++|+..|++.
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~a  125 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGD----AEAWQFLGITQAENENEQAAIVALQRC  125 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4455555555555555555555555544322    344445555555555555555555554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=96.47  E-value=0.016  Score=47.19  Aligned_cols=85  Identities=9%  Similarity=-0.049  Sum_probs=63.2

Q ss_pred             HHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHH
Q 013807          257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE  336 (436)
Q Consensus       257 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E  336 (436)
                      ..+.+..|++-.  .++|..-   +.-+..|..++..|++.+|+.+|++|+++-|..    -++.+.++.+|...|+.++
T Consensus        47 ~~~A~~~~~~al--~~~p~~~---~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~  117 (150)
T 4ga2_A           47 YDLAKKYICTYI--NVQERDP---KAHRFLGLLYELEENTDKAVECYRRSVELNPTQ----KDLVLKIAELLCKNDVTDG  117 (150)
T ss_dssp             HHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHCSSSS
T ss_pred             HHHHHHHHHHHH--HhCCCCH---HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHH
Confidence            344555555444  4455542   346678999999999999999999999987654    4577889999999999998


Q ss_pred             HHHHH-HH-HhcCCCH
Q 013807          337 ARIMY-EK-LQSHPNA  350 (436)
Q Consensus       337 AiaLY-kk-L~sHP~~  350 (436)
                      |+..| ++ |+-+|+-
T Consensus       118 aa~~~~~~al~l~P~~  133 (150)
T 4ga2_A          118 RAKYWVERAAKLFPGS  133 (150)
T ss_dssp             HHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHhCcCC
Confidence            77654 65 4567753

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=96.44  E-value=0.017  Score=46.61  Aligned_cols=64  Identities=6%  Similarity=-0.076  Sum_probs=44.2

Q ss_pred             HHHHHHH-HHhCCch--hhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807          283 ALKDGDS-LMDSGKL--KEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       283 a~~~Gk~-AmerGkY--r~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (436)
                      .+..|.. ++..|+|  .+|+.+|++++..-+..    ..+.+.++.+|...|+.++|+..|+++. .+|..
T Consensus        81 ~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A           81 YAALATVLYYQASQHMTAQTRAMIDKALALDSNE----ITALMLLASDAFMQANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             HHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence            4555666 6677777  77888887777765543    3456667777777888888888777764 55654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=96.43  E-value=0.022  Score=47.75  Aligned_cols=66  Identities=20%  Similarity=0.066  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL  351 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e  351 (436)
                      ..+..|..++..|+|.+|+.+|++|++.-+..    ..+.+.++.||-..|+.++|+..|+++. .+|+..
T Consensus        79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A           79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCccc----cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence            35667999999999999999999999987654    4788899999999999999999999985 566654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.38  E-value=0.012  Score=52.35  Aligned_cols=101  Identities=12%  Similarity=0.093  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCch----------hhhhhHHHHHHhhcccCccchhH
Q 013807          250 RAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKL----------KEALPFYEKVMNKMVFKSELHGL  319 (436)
Q Consensus       250 kaaR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkY----------r~AV~~lEkA~~~v~~~S~LGGe  319 (436)
                      ..+|..+..+.+..|+.-+  .++|..-   +.-+..|..+++.|++          .+|+..|++|+++-|..    -+
T Consensus        11 ~~~r~~~feeA~~~~~~Ai--~l~P~~a---ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~----~~   81 (158)
T 1zu2_A           11 EFDRILLFEQIRQDAENTY--KSNPLDA---DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK----DE   81 (158)
T ss_dssp             SHHHHHHHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC----HH
T ss_pred             HHHHHhHHHHHHHHHHHHH--HHCCCCH---HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc----HH
Confidence            4566777777888887666  4455533   3355678888888775          49999999999998764    45


Q ss_pred             HHHHHHHHHHhcC-----------ChHHHHHHHHHHh-cCCCHHHHHHHHHH
Q 013807          320 AALQWSICQDSLH-----------RPKEARIMYEKLQ-SHPNALVSKRARQF  359 (436)
Q Consensus       320 aqLwLAiAydA~G-----------R~~EAiaLYkkL~-sHP~~eVrKQAkrL  359 (436)
                      +...|.+||.+.|           +.++|+..|++-. -.|+-..-++|.++
T Consensus        82 A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~  133 (158)
T 1zu2_A           82 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            6778899998875           8999999999975 68887776666554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=96.37  E-value=0.015  Score=42.42  Aligned_cols=63  Identities=19%  Similarity=0.172  Sum_probs=52.8

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      .+..|..++..|++.+|+.+|+++++.-+..    ..+...++.+|-..|+.++|+.+|+++. .+|.
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   67 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR   67 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence            4667899999999999999999998875432    4567778999999999999999999985 4554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=96.36  E-value=0.016  Score=51.70  Aligned_cols=56  Identities=14%  Similarity=0.039  Sum_probs=26.0

Q ss_pred             HHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807          285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (436)
                      ..|..++..|+|.+|+.+|+++++..+..    ..+...++.||...|+.++|+..|++.
T Consensus       218 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a  273 (365)
T 4eqf_A          218 GLGVLFHLSGEFNRAIDAFNAALTVRPED----YSLWNRLGATLANGDRSEEAVEAYTRA  273 (365)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34444444555555555555544443322    223344444455555555555555444

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=96.36  E-value=0.015  Score=47.03  Aligned_cols=66  Identities=12%  Similarity=0.039  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHH-HHhcCCh--HHHHHHHHHHh-cCCCH
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSIC-QDSLHRP--KEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiA-ydA~GR~--~EAiaLYkkL~-sHP~~  350 (436)
                      ...+..|..++..|+|.+|+.+|++++..-+..    ..+.+.++.| |...|+.  ++|+.+|+++. .+|+-
T Consensus        45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~  114 (177)
T 2e2e_A           45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN----AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE  114 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC----HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc
Confidence            346788999999999999999999999987654    5677889999 8899998  99999999985 57763

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=96.36  E-value=0.0097  Score=62.86  Aligned_cols=85  Identities=16%  Similarity=0.241  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChH
Q 013807          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK  335 (436)
Q Consensus       256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~  335 (436)
                      +..+.+..|++-.  .++|..   .+..+..|..+++.|+|.+|+++|++|+++-+..    .++...|+.+|...|+.+
T Consensus        58 ~~~eA~~~~~~Al--~l~P~~---~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~----~~a~~~Lg~~~~~~g~~~  128 (723)
T 4gyw_A           58 KLQEALMHYKEAI--RISPTF---ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF----ADAHSNLASIHKDSGNIP  128 (723)
T ss_dssp             CHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHH--HhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHH
Confidence            4455566666544  334443   2335666788888888888888888887765433    466777888888888888


Q ss_pred             HHHHHHHHHh-cCCC
Q 013807          336 EARIMYEKLQ-SHPN  349 (436)
Q Consensus       336 EAiaLYkkL~-sHP~  349 (436)
                      +|+..|++.. -+|+
T Consensus       129 eAi~~~~~Al~l~P~  143 (723)
T 4gyw_A          129 EAIASYRTALKLKPD  143 (723)
T ss_dssp             HHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHhCCC
Confidence            8888888763 5665

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=96.34  E-value=0.04  Score=53.77  Aligned_cols=88  Identities=14%  Similarity=0.076  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC
Q 013807          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  332 (436)
Q Consensus       253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  332 (436)
                      +..+..+.+..|++-..  ++|..   .+..+..|..++..|+|.+|+.+|++|++.-+..    ..+...++.||...|
T Consensus        35 ~~g~~~~A~~~~~~al~--~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g  105 (568)
T 2vsy_A           35 GMGDTTAGEMAVQRGLA--LHPGH---PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH----PGIALWLGHALEDAG  105 (568)
T ss_dssp             HHTCHHHHHHHHHHHHT--TSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHHHHH--hCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcC
Confidence            33456677777776654  44543   3446778999999999999999999999986544    567888999999999


Q ss_pred             ChHHHHHHHHHHh-cCCC
Q 013807          333 RPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       333 R~~EAiaLYkkL~-sHP~  349 (436)
                      +.++|+..|++.. .+|+
T Consensus       106 ~~~~A~~~~~~al~~~p~  123 (568)
T 2vsy_A          106 QAEAAAAAYTRAHQLLPE  123 (568)
T ss_dssp             CHHHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHhCCC
Confidence            9999999999974 5665

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.33  E-value=0.00075  Score=49.70  Aligned_cols=85  Identities=9%  Similarity=0.158  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc--cchhHHHHHHHHHHHhcCC
Q 013807          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHR  333 (436)
Q Consensus       256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR  333 (436)
                      +..+.+..|++-.  .++|..   ....+..|..++..|+|.+|+..|++|+++-+...  ..-+.+.+.++.||..+|+
T Consensus        19 ~~~~A~~~~~~al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~   93 (111)
T 2l6j_A           19 LYREAVHCYDQLI--TAQPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGS   93 (111)
T ss_dssp             CHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHH--hcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence            4455566666544  344543   33467889999999999999999999999876642  2237788899999999999


Q ss_pred             hHHHHHHHHHHh
Q 013807          334 PKEARIMYEKLQ  345 (436)
Q Consensus       334 ~~EAiaLYkkL~  345 (436)
                      .++|+..++++.
T Consensus        94 ~~~a~~~~~~~~  105 (111)
T 2l6j_A           94 VQIPVVEVDELP  105 (111)
T ss_dssp             CCCCSSSSSSCS
T ss_pred             HhhhHhHHHHhH
Confidence            999988877663

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.32  E-value=0.013  Score=47.29  Aligned_cols=68  Identities=15%  Similarity=0.005  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc---cchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS---ELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S---~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      ..+...+..|..++..|+|.+|+.+|++|++......   ..-+.+...++.+|-..|+.++|+..|++..
T Consensus        64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (203)
T 3gw4_A           64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL  134 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3455566778888999999999999999888754322   2346677778888999999999998888764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=96.32  E-value=0.038  Score=48.65  Aligned_cols=90  Identities=13%  Similarity=0.109  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC
Q 013807          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  332 (436)
Q Consensus       253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  332 (436)
                      +..+..+.+..|++-.  .++|... .+...+..|..++..|+|.+|+.+|++++..-+..    ..+...++.||...|
T Consensus       193 ~~~~~~~A~~~~~~a~--~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~g  265 (368)
T 1fch_A          193 SDSLFLEVKELFLAAV--RLDPTSI-DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND----YLLWNKLGATLANGN  265 (368)
T ss_dssp             HHHHHHHHHHHHHHHH--HHSTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT
T ss_pred             hcccHHHHHHHHHHHH--HhCcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHcC
Confidence            4445555566665544  2334311 23446778999999999999999999999886543    567888999999999


Q ss_pred             ChHHHHHHHHHHh-cCCC
Q 013807          333 RPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       333 R~~EAiaLYkkL~-sHP~  349 (436)
                      +.++|+..|++.. .+|.
T Consensus       266 ~~~~A~~~~~~al~~~~~  283 (368)
T 1fch_A          266 QSEEAVAAYRRALELQPG  283 (368)
T ss_dssp             CHHHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHhCCC
Confidence            9999999999974 5665

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=96.32  E-value=0.013  Score=48.29  Aligned_cols=67  Identities=19%  Similarity=0.180  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV  352 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV  352 (436)
                      ..+..|..++..|+|.+|+.+|++++...+..    ..+.+.++.||...|+.++|+..|+++. .+|+...
T Consensus       161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~  228 (243)
T 2q7f_A          161 ARFQFGMCLANEGMLDEALSQFAAVTEQDPGH----ADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML  228 (243)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence            34566777777788888888887777765432    4466677777888888888888887764 5665443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.31  E-value=0.012  Score=47.39  Aligned_cols=68  Identities=15%  Similarity=0.039  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch--hHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--GLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG--GeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      ..+...+..|..++..|+|.+|+.+|+++++.........  ..+...++.+|...|+.++|+..|++..
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR  174 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            4555677889999999999999999999998765444333  4445889999999999999999998763

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=96.27  E-value=0.011  Score=62.37  Aligned_cols=88  Identities=18%  Similarity=0.207  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCC
Q 013807          254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  333 (436)
Q Consensus       254 ~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  333 (436)
                      ..+..+.++.|++-.  .++|..   .+..+..|..++..|+|.+|+.+|++|+++-+..    .++...|+.||...|+
T Consensus        22 ~G~~~eAi~~~~kAl--~l~P~~---~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~----~~a~~nLg~~l~~~g~   92 (723)
T 4gyw_A           22 QGNIEEAVRLYRKAL--EVFPEF---AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF----ADAYSNMGNTLKEMQD   92 (723)
T ss_dssp             TTCHHHHHHHHHHHH--HHCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHHH--HhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCC
Confidence            345667778887665  556654   3346778999999999999999999999886543    5788899999999999


Q ss_pred             hHHHHHHHHHHh-cCCCH
Q 013807          334 PKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       334 ~~EAiaLYkkL~-sHP~~  350 (436)
                      .++|+..|++.. -+|+-
T Consensus        93 ~~~A~~~~~kAl~l~P~~  110 (723)
T 4gyw_A           93 VQGALQCYTRAIQINPAF  110 (723)
T ss_dssp             HHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            999999999974 57753

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.25  E-value=0.021  Score=55.61  Aligned_cols=56  Identities=20%  Similarity=0.195  Sum_probs=44.0

Q ss_pred             CchhhhhhHHHHHHhhcccCc-----------cchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          294 GKLKEALPFYEKVMNKMVFKS-----------ELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       294 GkYr~AV~~lEkA~~~v~~~S-----------~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      |+|.+|+.+|++|+++.+...           .+--.+.++++.||-.+|+.++|+..|++.. .+|+
T Consensus       282 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~  349 (457)
T 1kt0_A          282 GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA  349 (457)
T ss_dssp             TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence            778888888888888877763           3445677888999999999999999998874 4554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=96.24  E-value=0.031  Score=50.79  Aligned_cols=87  Identities=23%  Similarity=0.210  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChH
Q 013807          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK  335 (436)
Q Consensus       256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~  335 (436)
                      +..+.+..|++-.  ..+|..   ....+..|..++..|+|.+|+.+|+++++.-+..    ..+...++.||...|+.+
T Consensus        41 ~~~~A~~~~~~~l--~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~  111 (450)
T 2y4t_A           41 QLADALSQFHAAV--DGDPDN---YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF----TAARLQRGHLLLKQGKLD  111 (450)
T ss_dssp             CHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHH--HhCCcc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHH
Confidence            4445555555433  222221   4455666888888888888888888888775443    466777888888888888


Q ss_pred             HHHHHHHHHh-cCCCHH
Q 013807          336 EARIMYEKLQ-SHPNAL  351 (436)
Q Consensus       336 EAiaLYkkL~-sHP~~e  351 (436)
                      +|+.+|+++. ..|+..
T Consensus       112 ~A~~~~~~~~~~~~~~~  128 (450)
T 2y4t_A          112 EAEDDFKKVLKSNPSEN  128 (450)
T ss_dssp             HHHHHHHHHHTSCCCHH
T ss_pred             HHHHHHHHHHhcCCCCh
Confidence            8888888875 566644

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.21  E-value=0.036  Score=49.23  Aligned_cols=91  Identities=7%  Similarity=0.016  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHhhcCCcC-CcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhH--HHHHHHHHHHhc
Q 013807          255 ERTRQLLAAYKKSVGLNV-DPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGL--AALQWSICQDSL  331 (436)
Q Consensus       255 ~rtke~LaaYrk~~Gl~V-dp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGe--aqLwLAiAydA~  331 (436)
                      .+..+.+.-|.+-.-..- ++..+....-.+..|...+..|+|.+|+.+|++|++........-++  +...++.||...
T Consensus        89 ~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  168 (293)
T 3u3w_A           89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAEN  168 (293)
T ss_dssp             TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHc
Confidence            334455555555443222 22222222223347889999999999999999999965444444444  457799999999


Q ss_pred             CChHHHHHHHHHHh
Q 013807          332 HRPKEARIMYEKLQ  345 (436)
Q Consensus       332 GR~~EAiaLYkkL~  345 (436)
                      |+.++|+..|++..
T Consensus       169 g~~~~A~~~~~~al  182 (293)
T 3u3w_A          169 GYLKKGIDLFEQIL  182 (293)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999999975

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=96.21  E-value=0.012  Score=48.29  Aligned_cols=58  Identities=12%  Similarity=0.080  Sum_probs=26.0

Q ss_pred             HHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHH
Q 013807          284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEK  343 (436)
Q Consensus       284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkk  343 (436)
                      +..|..++..|+|.+|+..|++++..-|...  ...+...|+.+|...|+.++|+..|++
T Consensus       112 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~a~~~l~~~~~~~g~~~~A~~~y~~  169 (176)
T 2r5s_A          112 CELAVQYNQVGRDEEALELLWNILKVNLGAQ--DGEVKKTFMDILSALGQGNAIASKYRR  169 (176)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT--TTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhCcccC--hHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence            4444445555555555555555444432211  123344444455555555555555543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=96.18  E-value=0.047  Score=53.09  Aligned_cols=102  Identities=13%  Similarity=0.027  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhC--------CchhhhhhHHHHHHhhcccCccchhHHHHHH
Q 013807          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDS--------GKLKEALPFYEKVMNKMVFKSELHGLAALQW  324 (436)
Q Consensus       253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~Amer--------GkYr~AV~~lEkA~~~v~~~S~LGGeaqLwL  324 (436)
                      +..+..+.+..|++-+  .++|..-   ...+..|..++..        |+|.+|+.+|++|+++-+. ..-...+.+.+
T Consensus       191 ~~g~~~~A~~~~~~al--~~~p~~~---~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~l  264 (474)
T 4abn_A          191 HSRHVMDSVRQAKLAV--QMDVLDG---RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK-ASSNPDLHLNR  264 (474)
T ss_dssp             HHHHHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-GGGCHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHH--HhCCCCH---HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-cccCHHHHHHH
Confidence            4455667777777655  3455432   3456778888888        9999999999999998542 22456788899


Q ss_pred             HHHHHhcCChHHHHHHHHHHh-cCCCH-HHHHHHHHHH
Q 013807          325 SICQDSLHRPKEARIMYEKLQ-SHPNA-LVSKRARQFM  360 (436)
Q Consensus       325 AiAydA~GR~~EAiaLYkkL~-sHP~~-eVrKQAkrLl  360 (436)
                      +.||...|+.++|+..|++.. .+|+- .......+++
T Consensus       265 g~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~  302 (474)
T 4abn_A          265 ATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLL  302 (474)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999984 56653 3333333333

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=96.16  E-value=0.024  Score=46.71  Aligned_cols=64  Identities=19%  Similarity=0.139  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ..+..|..++..|++.+|+.+|+++++..+..    ..+.+.++.+|...|+.++|+.+|+++. .+|.
T Consensus        93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~  157 (243)
T 2q7f_A           93 AYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN----GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN  157 (243)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS----HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            34556777778888888888888877765433    4566777788888888888888887764 4553

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=96.14  E-value=0.016  Score=49.61  Aligned_cols=89  Identities=12%  Similarity=-0.003  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc
Q 013807          252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  331 (436)
Q Consensus       252 aR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  331 (436)
                      .+..+..+.+..|++-..  .+|   ......+..|..++..|+|.+|+.+|+++++.-+..    ..+...++.||...
T Consensus        32 ~~~~~~~~A~~~~~~~~~--~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~  102 (327)
T 3cv0_A           32 LKLANLAEAALAFEAVCQ--AAP---EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTNE  102 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHH--HCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHT
T ss_pred             HHhccHHHHHHHHHHHHH--hCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC----HHHHHHHHHHHHHc
Confidence            334455566666665442  222   134455566888888888888888888887765432    45677778888888


Q ss_pred             CChHHHHHHHHHHh-cCCC
Q 013807          332 HRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       332 GR~~EAiaLYkkL~-sHP~  349 (436)
                      |+.++|+..|+++. .+|.
T Consensus       103 ~~~~~A~~~~~~~~~~~~~  121 (327)
T 3cv0_A          103 HNANAALASLRAWLLSQPQ  121 (327)
T ss_dssp             TCHHHHHHHHHHHHHTSTT
T ss_pred             CCHHHHHHHHHHHHHhCCc
Confidence            88888888888874 4444

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.12  E-value=0.017  Score=52.71  Aligned_cols=77  Identities=13%  Similarity=0.210  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcc---cCc----cchh--------------HHHHHHHHHHHhcCChH
Q 013807          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV---FKS----ELHG--------------LAALQWSICQDSLHRPK  335 (436)
Q Consensus       277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~---~~S----~LGG--------------eaqLwLAiAydA~GR~~  335 (436)
                      ..+++..+--|+.+|..|.|++|..+|.+|++..-   .++    -+|.              |+..+.|.||-.+++.+
T Consensus        60 ~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~  139 (167)
T 3ffl_A           60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK  139 (167)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence            34555677789999999999999999999965443   222    1221              68899999999999999


Q ss_pred             HHHHHHHHH-hcCCCHHHH
Q 013807          336 EARIMYEKL-QSHPNALVS  353 (436)
Q Consensus       336 EAiaLYkkL-~sHP~~eVr  353 (436)
                      +||++-+.| .+.-.+.|-
T Consensus       140 ~Ai~~Le~Ip~k~Rt~kvn  158 (167)
T 3ffl_A          140 DAIAILDGIPSRQRTPKIN  158 (167)
T ss_dssp             HHHHHHHTSCGGGCCHHHH
T ss_pred             HHHHHHhcCCchhcCHHHH
Confidence            999998887 355555553

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=96.12  E-value=0.017  Score=52.62  Aligned_cols=58  Identities=14%  Similarity=0.117  Sum_probs=47.4

Q ss_pred             HHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCC
Q 013807          288 DSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPN  349 (436)
Q Consensus       288 k~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~  349 (436)
                      ..+++.|+|.+|+..|+++++..+..    ..+...+++||...||.++|+..|++. ..+|+
T Consensus       174 ~l~~~~~~~~eA~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~  232 (291)
T 3mkr_A          174 SLAAGGEKLQDAYYIFQEMADKCSPT----LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG  232 (291)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHSCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHhCchHHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            44557799999999999999986542    456667899999999999999999995 56774

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=96.10  E-value=0.037  Score=47.43  Aligned_cols=69  Identities=13%  Similarity=0.031  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc-----cchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS-----ELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S-----~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ...+..|..++..|+|.+|+.+|+++++..+...     .-...+...++.||...|+.++|+..|++.. .+|+
T Consensus       194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  268 (330)
T 3hym_B          194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ  268 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            3456778899999999999999999988764322     1224577888999999999999999999875 4554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=96.02  E-value=0.017  Score=56.95  Aligned_cols=84  Identities=11%  Similarity=0.037  Sum_probs=64.3

Q ss_pred             HHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHH
Q 013807          258 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA  337 (436)
Q Consensus       258 ke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA  337 (436)
                      .+.+..|++-.  .++|..   ....+..|..++..|+|.+|+.+|++|+++-+..    ..+...++.||...|+.++|
T Consensus        23 ~~A~~~~~~Al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg~~~~~~g~~~eA   93 (477)
T 1wao_1           23 ENAIKFYSQAI--ELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----IKGYYRRAASNMALGKFRAA   93 (477)
T ss_dssp             HHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHH--HhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHH
Confidence            34444454433  234443   4456788999999999999999999999885433    56788899999999999999


Q ss_pred             HHHHHHHh-cCCCH
Q 013807          338 RIMYEKLQ-SHPNA  350 (436)
Q Consensus       338 iaLYkkL~-sHP~~  350 (436)
                      +..|++.. .+|+.
T Consensus        94 ~~~~~~al~~~p~~  107 (477)
T 1wao_1           94 LRDYETVVKVKPHD  107 (477)
T ss_dssp             HHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHhCCCC
Confidence            99999974 57754

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.02  E-value=0.015  Score=52.35  Aligned_cols=90  Identities=12%  Similarity=-0.010  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc
Q 013807          252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  331 (436)
Q Consensus       252 aR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  331 (436)
                      .+..+..+.++.|++-.  ..+|..   ....+..+..++.+|++.+|+..|+++++.-|..    -++.+.|+.+|...
T Consensus       162 ~~~g~~~~A~~~l~~~~--~~~p~~---~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~----~~~~~~la~~l~~~  232 (287)
T 3qou_A          162 IALNRSEDAEAVLXTIP--LQDQDT---RYQGLVAQIELLXQAADTPEIQQLQQQVAENPED----AALATQLALQLHQV  232 (287)
T ss_dssp             HHTTCHHHHHHHHTTSC--GGGCSH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHhCc--hhhcch---HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc----HHHHHHHHHHHHHc
Confidence            44556677777777543  444522   2346667777888888888999999988887654    45778889999999


Q ss_pred             CChHHHHHHHHHHh-cCCCH
Q 013807          332 HRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       332 GR~~EAiaLYkkL~-sHP~~  350 (436)
                      ||.++|+..|+++. .+|+.
T Consensus       233 g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          233 GRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             TCHHHHHHHHHHHHHHCTTG
T ss_pred             ccHHHHHHHHHHHHhccccc
Confidence            99999999998885 67764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=96.02  E-value=0.018  Score=50.64  Aligned_cols=88  Identities=13%  Similarity=0.099  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC
Q 013807          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  332 (436)
Q Consensus       253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  332 (436)
                      +..+..+.+..|++-..  ++|.   .....+..|..++..|+|.+|+.+|+++++.-+.    ...+...++.||...|
T Consensus        76 ~~g~~~~A~~~~~~al~--~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~g  146 (368)
T 1fch_A           76 QEGDLPNAVLLFEAAVQ--QDPK---HMEAWQYLGTTQAENEQELLAISALRRCLELKPD----NQTALMALAVSFTNES  146 (368)
T ss_dssp             HTTCHHHHHHHHHHHHH--SCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHH--hCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcC
Confidence            33445555555554442  2222   2344455566666666666666666666665433    2345566666666677


Q ss_pred             ChHHHHHHHHHHh-cCCC
Q 013807          333 RPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       333 R~~EAiaLYkkL~-sHP~  349 (436)
                      +.++|+.+|+++. .+|.
T Consensus       147 ~~~~A~~~~~~~~~~~~~  164 (368)
T 1fch_A          147 LQRQACEILRDWLRYTPA  164 (368)
T ss_dssp             CHHHHHHHHHHHHHTSTT
T ss_pred             CHHHHHHHHHHHHHhCcC
Confidence            7777776666664 3443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.02  E-value=0.02  Score=51.25  Aligned_cols=68  Identities=10%  Similarity=0.072  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchh--HHHHHHHHHHHhc-CChHHHHHHHHHHh
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG--LAALQWSICQDSL-HRPKEARIMYEKLQ  345 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG--eaqLwLAiAydA~-GR~~EAiaLYkkL~  345 (436)
                      ..+......|..+...|+|.+|+.+|++|+++.+......+  .+...++.+|... |+.++|+..|++..
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al  145 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAG  145 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            34556677899999999999999999999998765444443  4556689999995 99999999999874

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.01  E-value=0.03  Score=49.69  Aligned_cols=68  Identities=12%  Similarity=0.096  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc---CccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF---KSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~---~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      .++.-....|..++..|+|.+|+.+|++|++....   ....-..+-..++.||-..|+.++|+..|++..
T Consensus       153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al  223 (293)
T 3u3w_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            44555677899999999999999999999976543   233345567789999999999999999998763

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.00  E-value=0.029  Score=55.56  Aligned_cols=68  Identities=15%  Similarity=0.016  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhh----cccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNK----MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~----v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (436)
                      -..+...-..|..++..|+|.+|+++++++++.    ++.....=|..-..|+..|...|+.+||+.+|++-
T Consensus       326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            355555666789999999999999999998754    45555666888889999999999999999999875

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=95.99  E-value=0.0079  Score=46.35  Aligned_cols=58  Identities=19%  Similarity=0.206  Sum_probs=43.5

Q ss_pred             hCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807          292 DSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       292 erGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (436)
                      ..|+|.+|+.+|++|++.- ....-...+.+.|+.||-..|+.++|+..|++.. .+|+-
T Consensus         2 ~~g~~~~A~~~~~~al~~~-~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   60 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASG-LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH   60 (117)
T ss_dssp             -----CCCHHHHHHHHSSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCcHHHHHHHHHHHHHcC-CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            3689999999999999862 1122346788999999999999999999999985 57764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=95.97  E-value=0.018  Score=51.93  Aligned_cols=67  Identities=13%  Similarity=0.240  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (436)
                      ++..+..|..++..|+|.+|+.+|++|+..-+..    ..+...++.||...|+.++|+..|++.. .+|+-
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~   71 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQS   71 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            3557889999999999999999999999987653    5677889999999999999999999975 57754

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=95.87  E-value=0.019  Score=49.14  Aligned_cols=64  Identities=9%  Similarity=-0.022  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ..+..|..++..|+|.+|+.+|+++++.-+.    ...+...++.||...|+.++|+..|++.. .+|+
T Consensus       238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (330)
T 3hym_B          238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQ----NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD  302 (330)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc----chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence            4567799999999999999999999988654    46788889999999999999999999986 4664

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=95.85  E-value=0.039  Score=47.20  Aligned_cols=66  Identities=20%  Similarity=0.176  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      .+..+..|..++..|+|.+|+.+|+++++.-+.    ...+.+.++.||...|+.++|+..|++.. .+|.
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~   87 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK   87 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Confidence            345788999999999999999999999987654    45677889999999999999999999985 5664

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=95.83  E-value=0.083  Score=47.54  Aligned_cols=68  Identities=10%  Similarity=0.016  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch--hHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--GLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG--GeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      ..+...+..|..++..|+|.+|+.+|+++++..+......  ..+...++.+|-..|+.++|+..|++..
T Consensus       221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  290 (411)
T 4a1s_A          221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL  290 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            4555677889999999999999999999998886533322  3477789999999999999999998874

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=95.79  E-value=0.024  Score=50.39  Aligned_cols=64  Identities=17%  Similarity=0.161  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc--cchhHHHHHHHHHHHhcCChHHH-HHHHHHH
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEA-RIMYEKL  344 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EA-iaLYkkL  344 (436)
                      ...+..|..++..|+|.+|+.+|++|++......  .+-+.+-..++.||...|+.++| +..|++-
T Consensus       197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A  263 (293)
T 2qfc_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            5678889999999999999999999998864322  22377788899999999999999 6667653

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.79  E-value=0.05  Score=54.30  Aligned_cols=67  Identities=10%  Similarity=-0.047  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhh----cccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNK----MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~----v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (436)
                      ..+...-..|..+..+|+|.+|+++|++|++.    ++....-=|..-..|+..|...|+.+||+.||++-
T Consensus       338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA  408 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            34444555688999999999999999999765    34444444677788999999999999999999874

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=95.76  E-value=0.02  Score=48.39  Aligned_cols=68  Identities=13%  Similarity=0.067  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc--CccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807          277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (436)
                      ...+...+..|..++..|+|.+|+.+|+++++..+.  ....-..+...++.+|...|+.++|+..|++.
T Consensus       220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  289 (338)
T 3ro2_A          220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH  289 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            344555666777777777777777777777665432  35566666777777777777777777777765

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.75  E-value=0.073  Score=45.84  Aligned_cols=65  Identities=18%  Similarity=0.061  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHh----CCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCHHH
Q 013807          282 KALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNALV  352 (436)
Q Consensus       282 ea~~~Gk~Ame----rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~eV  352 (436)
                      ..+..|..++.    .|++.+|+.+|++|++.-      ...+...|+.+|..    .++.++|+..|++....-+...
T Consensus        40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a  112 (273)
T 1ouv_A           40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEG  112 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccH
Confidence            44556777777    888888888888887651      45677778888888    8888888888888765544443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=95.74  E-value=0.047  Score=49.20  Aligned_cols=56  Identities=13%  Similarity=0.024  Sum_probs=25.1

Q ss_pred             HHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807          285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (436)
                      ..|..++..|++.+|+..|+++++.-+..    ..+...++.+|...|+.++|+.+|++.
T Consensus       242 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a  297 (388)
T 1w3b_A          242 NLACVYYEQGLIDLAIDTYRRAIELQPHF----PDAYCNLANALKEKGSVAEAEDCYNTA  297 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSSC----HHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33444444455555555554444433221    223344444444444444444444444

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=95.72  E-value=0.071  Score=48.87  Aligned_cols=79  Identities=14%  Similarity=0.011  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHh---CCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHH
Q 013807          282 KALKDGDSLMD---SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRAR  357 (436)
Q Consensus       282 ea~~~Gk~Ame---rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAk  357 (436)
                      ..+..|..++.   .|+|.+|+.+|+++++.-+..    ..+.+.++.||...|+.++|+..|++.. .+|.-.-..++.
T Consensus       414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  489 (514)
T 2gw1_A          414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS----EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI  489 (514)
T ss_dssp             HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence            45677888999   999999999999999876543    5678889999999999999999999985 688766555555


Q ss_pred             HHHHHHH
Q 013807          358 QFMFSFQ  364 (436)
Q Consensus       358 rLlyiLE  364 (436)
                      .++...+
T Consensus       490 ~~~~~~~  496 (514)
T 2gw1_A          490 TFAEAAK  496 (514)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444433

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=95.70  E-value=0.037  Score=51.41  Aligned_cols=77  Identities=13%  Similarity=0.048  Sum_probs=58.7

Q ss_pred             HHHHHHHhC----------CchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHH
Q 013807          285 KDGDSLMDS----------GKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVS  353 (436)
Q Consensus       285 ~~Gk~Amer----------GkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVr  353 (436)
                      ..|..++..          |+|.+|+.+|+++++.-+..    ..+.+.++.||...|+.++|+..|++.. .+|...-.
T Consensus       423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  498 (537)
T 3fp2_A          423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS----EQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK  498 (537)
T ss_dssp             HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred             HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence            345666666          99999999999999986543    3788999999999999999999999985 57776666


Q ss_pred             HHHHHHHHHHHh
Q 013807          354 KRARQFMFSFQA  365 (436)
Q Consensus       354 KQAkrLlyiLEA  365 (436)
                      .++..+.-...+
T Consensus       499 ~~~~~~~~~~~~  510 (537)
T 3fp2_A          499 LQATTFAEAAKI  510 (537)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHH
Confidence            665555444433

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=95.68  E-value=0.05  Score=49.60  Aligned_cols=90  Identities=9%  Similarity=-0.048  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHhhcCCcCC-cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCcc---chhHHHHHHHHHHHhc
Q 013807          256 RTRQLLAAYKKSVGLNVD-PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE---LHGLAALQWSICQDSL  331 (436)
Q Consensus       256 rtke~LaaYrk~~Gl~Vd-p~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~---LGGeaqLwLAiAydA~  331 (436)
                      +..+.+..|++-..+--. +.....+...+..|..++..|+|.+|+.+|++|++.......   .-+.+...++.||...
T Consensus       118 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~  197 (383)
T 3ulq_A          118 EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDL  197 (383)
T ss_dssp             CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHh
Confidence            344555556655543111 223346667788899999999999999999999988765532   2246777899999999


Q ss_pred             CChHHHHHHHHHHh
Q 013807          332 HRPKEARIMYEKLQ  345 (436)
Q Consensus       332 GR~~EAiaLYkkL~  345 (436)
                      |+.++|+..|++..
T Consensus       198 g~~~~A~~~~~~al  211 (383)
T 3ulq_A          198 KQYEDAISHFQKAY  211 (383)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHH
Confidence            99999999998864

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.67  E-value=0.035  Score=50.56  Aligned_cols=63  Identities=14%  Similarity=0.161  Sum_probs=44.2

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchh-------------HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG-------------LAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG-------------eaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      .+++|+.++..|+|.+|++.|.++++..+..+....             .+-.+|+.+|...|+.++|+.+|+++.
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~   82 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST   82 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            566777777788888888888887776655543321             345667777888888888888877763

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=95.66  E-value=0.063  Score=48.83  Aligned_cols=60  Identities=17%  Similarity=-0.033  Sum_probs=49.6

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL  351 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e  351 (436)
                      .+..|..++..|+|.+|+..|++     +    -.-++.+.++.+|...||.++|+..|+++. .+|+.-
T Consensus       104 ~~~la~~~~~~g~~~~Al~~l~~-----~----~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~  164 (291)
T 3mkr_A          104 LLMAASIYFYDQNPDAALRTLHQ-----G----DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT  164 (291)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTT-----C----CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHhC-----C----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH
Confidence            67788999999999999999987     1    234677778999999999999999999985 577753

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=95.66  E-value=0.0067  Score=59.76  Aligned_cols=68  Identities=9%  Similarity=-0.011  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (436)
                      .++..+..|..++..|+|.+|+++|++|++.-+..    ..+...++.||...|+.++|+..|++.. .||.-
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   73 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY   73 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            34455677899999999999999999999986544    6778889999999999999999999985 67753

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=95.61  E-value=0.024  Score=52.77  Aligned_cols=64  Identities=19%  Similarity=0.164  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ..+..|..++..|+|.+|+.+|++|+++-+.+    ..+.+.++.||..+|+.++|+..|++.. .+|+
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~  296 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN----PKALFRRGKAKAELGQMDSARDDFRKAQKYAPD  296 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            34667999999999999999999999886543    5678999999999999999999999985 4554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=95.56  E-value=0.034  Score=56.36  Aligned_cols=64  Identities=14%  Similarity=0.048  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch------hHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------GLAALQWSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG------GeaqLwLAiAydA~GR~~EAiaLYkkL  344 (436)
                      .++..++....+..+|+|.+|+++|+++++...  ..||      ..+.-.|+.+|...|+.++|+.+|++.
T Consensus       308 ~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~--~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a  377 (490)
T 3n71_A          308 FSKDTLEKIDKARSEGLYHEVVKLCRECLEKQE--PVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRM  377 (490)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT--TTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            455667777888899999999999999987642  2343      466677999999999999999988874

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=95.49  E-value=0.033  Score=54.37  Aligned_cols=84  Identities=13%  Similarity=0.068  Sum_probs=58.4

Q ss_pred             HHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHH
Q 013807          258 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA  337 (436)
Q Consensus       258 ke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA  337 (436)
                      .+.+..|++-.  ..+|..   ....+..|..++..|+|.+|+.+|++|++.-+..    ..+.+.++.||...|+.++|
T Consensus         6 ~~A~~~~~~al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A   76 (568)
T 2vsy_A            6 PRELLQLRAAV--RHRPQD---FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH----PEAVARLGRVRWTQQRHAEA   76 (568)
T ss_dssp             -----------------CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC----HHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHH--HhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHH
Confidence            34444554433  344443   2446778999999999999999999999986543    56788999999999999999


Q ss_pred             HHHHHHHh-cCCCH
Q 013807          338 RIMYEKLQ-SHPNA  350 (436)
Q Consensus       338 iaLYkkL~-sHP~~  350 (436)
                      +..|++.. .+|+-
T Consensus        77 ~~~~~~al~~~p~~   90 (568)
T 2vsy_A           77 AVLLQQASDAAPEH   90 (568)
T ss_dssp             HHHHHHHHHHCTTC
T ss_pred             HHHHHHHHhcCCCC
Confidence            99999985 57753

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=95.49  E-value=0.03  Score=49.45  Aligned_cols=67  Identities=15%  Similarity=0.047  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc--cchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      .+...+..|..++..|+|.+|+.+|++|++......  ..-..+...++.||...|+.++|+..|++..
T Consensus       266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  334 (406)
T 3sf4_A          266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  334 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345566778888889999999999999887765432  2225566778889999999999999888853

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=95.49  E-value=0.034  Score=50.17  Aligned_cols=65  Identities=12%  Similarity=0.002  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCcc--chhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE--LHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~--LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      +......|..+.. |+|.+|+.+|++|++..+....  .-..+...++.+|...|+.++|+..|++..
T Consensus       116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  182 (307)
T 2ifu_A          116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK  182 (307)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444556777777 9999999999999988765332  235667778999999999999999999875

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=95.48  E-value=0.033  Score=50.78  Aligned_cols=69  Identities=12%  Similarity=0.203  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc--cchhHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQS  346 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s  346 (436)
                      ..+...+..|..++..|+|.+|+++|++|++......  ..-+.+...++.||...|+.++|+..|++...
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  252 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA  252 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4455677789999999999999999999998875432  33356777899999999999999999998754

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=95.47  E-value=0.23  Score=50.33  Aligned_cols=116  Identities=11%  Similarity=0.091  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhh----cccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-------c
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNK----MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-------S  346 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~----v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-------s  346 (436)
                      ..+...-..|..+...|+|.+|+++|++|++.    ++.....=+..-..||..|...|+.+||+.||++-.       .
T Consensus       349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG  428 (490)
T 3n71_A          349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHG  428 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            45555666788999999999999999999765    344444447778889999999999999999998752       3


Q ss_pred             CCCHHHHHHHHHHHHHHH-hhhhhhhcccCCCCcchHHHHHHhhcccccccCcc
Q 013807          347 HPNALVSKRARQFMFSFQ-AMEMMKVRSSSDKNTDYRNFFEAFVEDKTNYPLQE  399 (436)
Q Consensus       347 HP~~eVrKQAkrLlyiLE-Ap~llKv~~~~~~~t~Yd~Yf~~f~~~kt~y~~~e  399 (436)
                      .-|+.|.+.- .+|-..+ .+++.  .+.   -.-|+.==++..+++.++.-.|
T Consensus       429 ~~Hp~~~~~~-~~l~~~~~e~~~~--~~a---e~~~~~~~~~~~~~~~~~~~~~  476 (490)
T 3n71_A          429 PSHPITKDLE-AMRMQTEMELRMF--RQN---EFMYHKMREAALNNQPMQVMAE  476 (490)
T ss_dssp             TTSHHHHHHH-HHHHHHHHHHHHH--HHH---HHHHHHHHHHHHTC--------
T ss_pred             CCChHHHHHH-HHHHHHHHHHHHH--HHH---HHHHHHHHHHHhcCCCCccccC
Confidence            4455666533 3443333 22222  111   0112333355667777776555

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=95.46  E-value=0.034  Score=50.93  Aligned_cols=68  Identities=13%  Similarity=0.107  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc--CccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      ..+...+..|..++..|+|.+|+++|++|++....  ....-+.+...++.||...|+.++|+..|++..
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al  249 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA  249 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            45566678899999999999999999999987643  233456778889999999999999999999874

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=95.42  E-value=0.045  Score=49.32  Aligned_cols=85  Identities=14%  Similarity=0.213  Sum_probs=58.8

Q ss_pred             HHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHH
Q 013807          257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE  336 (436)
Q Consensus       257 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E  336 (436)
                      ..+.+..|++-.  .++|..-.   ..+..|..++..|++.+|+..|+++++..+..    ..+...++.+|...|+.++
T Consensus       253 ~~~A~~~~~~al--~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~  323 (388)
T 1w3b_A          253 IDLAIDTYRRAI--ELQPHFPD---AYCNLANALKEKGSVAEAEDCYNTALRLCPTH----ADSLNNLANIKREQGNIEE  323 (388)
T ss_dssp             HHHHHHHHHHHH--HTCSSCHH---HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHHH--hhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHcCCHHH
Confidence            344455555443  33444322   35667888888889999999998888876543    4566778888888888888


Q ss_pred             HHHHHHHHh-cCCCH
Q 013807          337 ARIMYEKLQ-SHPNA  350 (436)
Q Consensus       337 AiaLYkkL~-sHP~~  350 (436)
                      |+.+|++.. .+|+-
T Consensus       324 A~~~~~~al~~~p~~  338 (388)
T 1w3b_A          324 AVRLYRKALEVFPEF  338 (388)
T ss_dssp             HHHHHHHHTTSCTTC
T ss_pred             HHHHHHHHHhcCCCc
Confidence            888888875 56653

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=95.34  E-value=0.09  Score=48.09  Aligned_cols=89  Identities=7%  Similarity=-0.084  Sum_probs=66.1

Q ss_pred             HHHHHHHHHhhcCCcCC-cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCcc---chhHHHHHHHHHHHhcC
Q 013807          257 TRQLLAAYKKSVGLNVD-PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE---LHGLAALQWSICQDSLH  332 (436)
Q Consensus       257 tke~LaaYrk~~Gl~Vd-p~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~---LGGeaqLwLAiAydA~G  332 (436)
                      ..+.+..|++-..+--. +.....++..+..|..++..|+|..|+.+|++|++.......   .-+.+...++.||...|
T Consensus       117 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~  196 (378)
T 3q15_A          117 YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFK  196 (378)
T ss_dssp             HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhC
Confidence            44555556655443211 223456667788899999999999999999999998765433   23566678999999999


Q ss_pred             ChHHHHHHHHHHh
Q 013807          333 RPKEARIMYEKLQ  345 (436)
Q Consensus       333 R~~EAiaLYkkL~  345 (436)
                      +.++|+..|++..
T Consensus       197 ~~~~A~~~~~~al  209 (378)
T 3q15_A          197 HYDKALPHLEAAL  209 (378)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999998864

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.17  E-value=0.053  Score=54.12  Aligned_cols=63  Identities=13%  Similarity=-0.108  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcc----cCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMV----FKSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~----~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (436)
                      ..++.++.+-..|+|.+|+++|+++++...    .....=..+--.|+.+|...|+.++|+.||++.
T Consensus       300 ~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a  366 (433)
T 3qww_A          300 NVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI  366 (433)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            455667777788999999999999987642    222222566667999999999999999999875

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=94.97  E-value=0.18  Score=43.32  Aligned_cols=64  Identities=14%  Similarity=0.046  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHh----CCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCHH
Q 013807          282 KALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNAL  351 (436)
Q Consensus       282 ea~~~Gk~Ame----rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~e  351 (436)
                      ..+..|..++.    .|++.+|+.+|++|++.-      ...+...|+.+|..    .++.++|+..|++....-+..
T Consensus        76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  147 (273)
T 1ouv_A           76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGD  147 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHH
Confidence            34455788888    999999999999998761      56888999999999    999999999999987554443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=94.96  E-value=0.063  Score=55.05  Aligned_cols=64  Identities=11%  Similarity=0.146  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ..+..|..++..|+|.+|+..|++|++.-+..    .++...++.||...|+.++|+..|++.. ..|+
T Consensus       435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  499 (681)
T 2pzi_A          435 LPLMEVRALLDLGDVAKATRKLDDLAERVGWR----WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG  499 (681)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhccCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            35677888888888888888888888775544    4566777888888888888888888864 4553

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=94.91  E-value=0.11  Score=49.35  Aligned_cols=64  Identities=9%  Similarity=-0.068  Sum_probs=54.6

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (436)
                      .+..|..++..|++.+|+.+|+++++.-+..    ..+...++.+|...|+.++|+.+|+++. .+|+-
T Consensus       519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~  583 (597)
T 2xpi_A          519 WANLGHAYRKLKMYDAAIDALNQGLLLSTND----ANVHTAIALVYLHKKIPGLAITHLHESLAISPNE  583 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence            4556888899999999999999999886543    4778889999999999999999999985 57754

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=94.90  E-value=0.023  Score=52.33  Aligned_cols=61  Identities=11%  Similarity=-0.001  Sum_probs=47.4

Q ss_pred             HHHHHHHhCCchhhhhhHHHHHHhhcccCccc--h---hHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL--H---GLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L--G---GeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      ..|...+..|+|++|+++|++|+++.......  +   -.+-..++.+|...|+.++|+..|++..
T Consensus        56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~  121 (472)
T 4g1t_A           56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK  121 (472)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            36899999999999999999999876432111  1   1233468999999999999999998863

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=94.66  E-value=0.13  Score=46.20  Aligned_cols=67  Identities=16%  Similarity=0.003  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchh--HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG--LAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG--eaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      .+...+..|..++..|+|.+|+.+|++|++..+......+  .+...++.+|-..|+.++|+.+|++..
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al  120 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF  120 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4445667799999999999999999999988765444433  345679999999999999999999874

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=94.64  E-value=0.054  Score=52.38  Aligned_cols=85  Identities=8%  Similarity=-0.049  Sum_probs=57.4

Q ss_pred             HHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHH
Q 013807          257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE  336 (436)
Q Consensus       257 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E  336 (436)
                      ..+.|..|++-.  .++|+.-.   .-+..|..++..|+|.+|+..|++|+++-+.+.    .+-..++.||...|+.++
T Consensus       148 ~~eAl~~~~~al--~l~P~~~~---a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~----~a~~~lg~~~~~~g~~~e  218 (382)
T 2h6f_A          148 LHEEMNYITAII--EEQPKNYQ---VWHHRRVLVEWLRDPSQELEFIADILNQDAKNY----HAWQHRQWVIQEFKLWDN  218 (382)
T ss_dssp             HHHHHHHHHHHH--HHCTTCHH---HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHHHHHH--HHCCCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH----HHHHHHHHHHHHcCChHH
Confidence            344444444333  33444322   245567778888888888888888887766543    455678888899999999


Q ss_pred             HHHHHHHHh-cCCCH
Q 013807          337 ARIMYEKLQ-SHPNA  350 (436)
Q Consensus       337 AiaLYkkL~-sHP~~  350 (436)
                      |+..|+++. .+|+-
T Consensus       219 Al~~~~~al~l~P~~  233 (382)
T 2h6f_A          219 ELQYVDQLLKEDVRN  233 (382)
T ss_dssp             HHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCC
Confidence            999998875 56653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=94.51  E-value=0.11  Score=46.82  Aligned_cols=68  Identities=15%  Similarity=0.033  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc----cchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS----ELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S----~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      ..+...+..|..++..|+|.+|+.+|+++++......    .....+...++.+|-..|+.++|+.+|++..
T Consensus        91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  162 (373)
T 1hz4_A           91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI  162 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3444566789999999999999999999998875322    2345667779999999999999999999864

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=94.47  E-value=0.16  Score=43.53  Aligned_cols=65  Identities=17%  Similarity=0.061  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC----ChHHHHHHHHHHhcCCCHH
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH----RPKEARIMYEKLQSHPNAL  351 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G----R~~EAiaLYkkL~sHP~~e  351 (436)
                      .+..+..|..++..|++.+|+.+|++|.+.      =...+...|+++|.. +    +.++|+..|++....-++.
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~   86 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ------GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKS   86 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHH
Confidence            345667788888888888888888888764      135777888888887 6    7888888888876444443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=94.43  E-value=0.066  Score=54.88  Aligned_cols=83  Identities=7%  Similarity=0.015  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc
Q 013807          252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  331 (436)
Q Consensus       252 aR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  331 (436)
                      .+..+..+.++.|++-.  .++|..   .+..+..|..++..|+|.+|+..|++|+++-+...    .+.+.++.||...
T Consensus       444 ~~~g~~~~A~~~~~~al--~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~----~~~~~lg~~~~~~  514 (681)
T 2pzi_A          444 LDLGDVAKATRKLDDLA--ERVGWR---WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL----APKLALAATAELA  514 (681)
T ss_dssp             HHHTCHHHHHHHHHHHH--HHHCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS----HHHHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHh--ccCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHc
Confidence            34456677777777655  334443   33466778888888888888888888877766543    3334444444444


Q ss_pred             CChHHHHHHHHHH
Q 013807          332 HRPKEARIMYEKL  344 (436)
Q Consensus       332 GR~~EAiaLYkkL  344 (436)
                      |+.++ +..|++.
T Consensus       515 g~~~~-~~~~~~a  526 (681)
T 2pzi_A          515 GNTDE-HKFYQTV  526 (681)
T ss_dssp             TCCCT-TCHHHHH
T ss_pred             CChHH-HHHHHHH
Confidence            44444 4444443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=93.82  E-value=0.069  Score=51.24  Aligned_cols=65  Identities=12%  Similarity=0.053  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHP  348 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP  348 (436)
                      ..|-.|..++..|+|.+|+.+|+++....  ...+...+.++|.+||..+|+.++|+..|++...-|
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~  201 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP  201 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence            56889999999999999999999765433  112456899999999999999999999999996433

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=93.69  E-value=0.35  Score=43.30  Aligned_cols=82  Identities=12%  Similarity=0.156  Sum_probs=57.7

Q ss_pred             HHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHH
Q 013807          258 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA  337 (436)
Q Consensus       258 ke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA  337 (436)
                      .+.+..|++-+-. ++|....   --+..|..+...|++.+|...|++|++.-+....   .+-+.++.++...|+.++|
T Consensus        81 ~~A~~~~~rAl~~-~~p~~~~---~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~A  153 (308)
T 2ond_A           81 DEAANIYERAIST-LLKKNML---LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRAEGIKSG  153 (308)
T ss_dssp             HHHHHHHHHHHTT-TTTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH---HHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHH-hCcccHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc---HHHHHHHHHHHHhcCHHHH
Confidence            4455555554420 3454322   2445677888899999999999999986543322   2677788889999999999


Q ss_pred             HHHHHHHhc
Q 013807          338 RIMYEKLQS  346 (436)
Q Consensus       338 iaLYkkL~s  346 (436)
                      +.+|++...
T Consensus       154 ~~~~~~a~~  162 (308)
T 2ond_A          154 RMIFKKARE  162 (308)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999999864

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=93.57  E-value=0.2  Score=48.38  Aligned_cols=65  Identities=9%  Similarity=0.020  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHhCCc-hhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807          282 KALKDGDSLMDSGK-LKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       282 ea~~~Gk~AmerGk-Yr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (436)
                      .-+..|..++..|+ |.+|+..|++|+.+-+..    -.+-..++.||..+|+.++|+..|++.. ..|.-
T Consensus       133 a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~----~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~  199 (382)
T 2h6f_A          133 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN----YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN  199 (382)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC
Confidence            34556899999997 999999999999887654    3456678999999999999999999985 45543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=93.49  E-value=1.1  Score=39.99  Aligned_cols=50  Identities=16%  Similarity=0.185  Sum_probs=43.7

Q ss_pred             CCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013807          293 SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS  346 (436)
Q Consensus       293 rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s  346 (436)
                      .|++.+|+..|++|++..+..    ..+-+.++..+...|+.++|+++|++...
T Consensus       182 ~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~g~~~~A~~~~~~al~  231 (308)
T 2ond_A          182 SKDKSVAFKIFELGLKKYGDI----PEYVLAYIDYLSHLNEDNNTRVLFERVLT  231 (308)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            699999999999999987753    45667778889999999999999999976

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=93.20  E-value=0.26  Score=46.75  Aligned_cols=59  Identities=7%  Similarity=-0.011  Sum_probs=32.6

Q ss_pred             HHHHHHhCCchhhhhhHHHHHHhhccc---CccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807          286 DGDSLMDSGKLKEALPFYEKVMNKMVF---KSELHGLAALQWSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~---~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL  344 (436)
                      .|..++..|++.+|+.+|+++++..+.   .......+...++.+|-..|+.++|+.+|+++
T Consensus       481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  542 (597)
T 2xpi_A          481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG  542 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            355555666666666666666555321   11112345555666666666666666666665

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=93.05  E-value=0.49  Score=38.41  Aligned_cols=64  Identities=19%  Similarity=0.131  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHh----CCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCH
Q 013807          281 EKALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNA  350 (436)
Q Consensus       281 eea~~~Gk~Ame----rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~  350 (436)
                      ...+..|..++.    .+++.+|+.+|++|.+.      =...++.+|+++|..    ..+.++|+..|++-..+-++
T Consensus        58 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~  129 (138)
T 1klx_A           58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  129 (138)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence            344556666666    67777777777777654      135677777777777    77777777777776544443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.99  E-value=0.23  Score=45.22  Aligned_cols=98  Identities=10%  Similarity=0.095  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCcCC------------cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccc
Q 013807          249 ARAAKEERTRQLLAAYKKSVGLNVD------------PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL  316 (436)
Q Consensus       249 EkaaR~~rtke~LaaYrk~~Gl~Vd------------p~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L  316 (436)
                      ++..+..+..+.+..|.+-.-++-+            .......+..+..|..+++.|+|.+|+++|+.++.....-..-
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            3456667788888888764422221            1223334446678999999999999999999887655432211


Q ss_pred             ----------h--------------------------------hHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013807          317 ----------H--------------------------------GLAALQWSICQDSLHRPKEARIMYEKLQS  346 (436)
Q Consensus       317 ----------G--------------------------------GeaqLwLAiAydA~GR~~EAiaLYkkL~s  346 (436)
                                |                                ..+.+.|+.+|...|+.++|+.+++++..
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~  163 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR  163 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence                      0                                12344577778888888888888888873

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.46  E-value=0.67  Score=45.02  Aligned_cols=129  Identities=9%  Similarity=0.085  Sum_probs=85.4

Q ss_pred             CCccccCCCcccCCCCccCcHHHH---HH--------------HHHHHHHHHHHHHhhcCCcCC-c----chHHHHH---
Q 013807          227 NISKTFGGGRTIRPGDVLETAEAR---AA--------------KEERTRQLLAAYKKSVGLNVD-P----KLKSECE---  281 (436)
Q Consensus       227 NISkayGGGR~IrpGe~lEteEEk---aa--------------R~~rtke~LaaYrk~~Gl~Vd-p----~~k~e~e---  281 (436)
                      .|--..|+|..+.+.. .+.+=..   ..              ..+...+.|+-||...=-++. .    ......+   
T Consensus        92 ~i~~~~~~GY~l~~~~-~~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~  170 (388)
T 2ff4_A           92 VVLAAAPPGYRLSIPD-NTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDK  170 (388)
T ss_dssp             HHEEECSSEEEECCCG-GGBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHH
T ss_pred             eEEEEECCEEEEcCCC-ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHH
Confidence            4556778898887653 2222211   11              123355667777655422331 1    1111222   


Q ss_pred             --HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc--------CCCHH
Q 013807          282 --KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS--------HPNAL  351 (436)
Q Consensus       282 --ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s--------HP~~e  351 (436)
                        ...+....++..|++.+|+..++.++..-|..-+    +..+|..||-..||+.+|+..|+++..        -|.++
T Consensus       171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~----~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~  246 (388)
T 2ff4_A          171 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREP----LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  246 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH----HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence              2223467788999999999999999888776654    456778899999999999999999864        58999


Q ss_pred             HHHHHHHHH
Q 013807          352 VSKRARQFM  360 (436)
Q Consensus       352 VrKQAkrLl  360 (436)
                      ++.--++|+
T Consensus       247 l~~l~~~il  255 (388)
T 2ff4_A          247 LRALNERIL  255 (388)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888777765

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=92.21  E-value=2  Score=36.69  Aligned_cols=70  Identities=7%  Similarity=-0.090  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHh----CCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc-C-----ChHHHHHHHHHHhcCCC
Q 013807          280 CEKALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL-H-----RPKEARIMYEKLQSHPN  349 (436)
Q Consensus       280 ~eea~~~Gk~Ame----rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~-G-----R~~EAiaLYkkL~sHP~  349 (436)
                      ....+..|..++.    .+++.+|+.+|++|.++ +.    ...+..+|+++|..- |     +.++|+..|++-..+-+
T Consensus       125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~----~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SR----TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SC----TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CC----CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            4556777888888    78999999999999876 22    245889999999754 3     89999999999875555


Q ss_pred             HHHHH
Q 013807          350 ALVSK  354 (436)
Q Consensus       350 ~eVrK  354 (436)
                      .+-..
T Consensus       200 ~~A~~  204 (212)
T 3rjv_A          200 DTGCE  204 (212)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=92.20  E-value=0.45  Score=33.46  Aligned_cols=68  Identities=18%  Similarity=0.286  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC
Q 013807          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  332 (436)
Q Consensus       256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  332 (436)
                      +..+.+..|++-.  .++|..   ....+..|..++..|+|.+|+.+|+++++.-+..    ..+...++.+|...|
T Consensus        24 ~~~~A~~~~~~a~--~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           24 DYDEAIEYYQKAL--ELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAKQNLGNAKQKQG   91 (91)
T ss_dssp             CHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHH--hcCCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcC
Confidence            4445555555544  233432   2346788999999999999999999999986543    456677777776554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.18  E-value=0.7  Score=36.35  Aligned_cols=64  Identities=16%  Similarity=-0.005  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHhCCc---hhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          282 KALKDGDSLMDSGK---LKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       282 ea~~~Gk~AmerGk---Yr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      -.+..|..+|-.+.   ..+|..+|++|+..=+.+    ..+.+.|+..+-..|+.++||..|+++. ..|.
T Consensus         8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~----~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN----EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            35566777764443   899999999999977544    5678889999999999999999999985 5666

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=92.18  E-value=0.27  Score=37.17  Aligned_cols=50  Identities=8%  Similarity=-0.084  Sum_probs=41.7

Q ss_pred             hhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807          297 KEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       297 r~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (436)
                      .+|+..|++++..-+..    ..+.+.++.+|...|+.++|+..|++.. .+|..
T Consensus         2 ~~a~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   52 (115)
T 2kat_A            2 QAITERLEAMLAQGTDN----MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY   52 (115)
T ss_dssp             CCHHHHHHHHHTTTCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence            57899999999876543    4678889999999999999999999985 56653

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=91.80  E-value=0.17  Score=37.00  Aligned_cols=77  Identities=17%  Similarity=0.177  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC
Q 013807          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  332 (436)
Q Consensus       253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  332 (436)
                      +..+..+.+..|++-+  .++|....  ...+..|..++..|+|.+|+.+|++|+.+-+......    .+        +
T Consensus        12 ~~~~~~~A~~~~~~al--~~~p~~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~----~~--------~   75 (99)
T 2kc7_A           12 NQGDIENALQALEEFL--QTEPVGKD--EAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ----AR--------K   75 (99)
T ss_dssp             HHTCHHHHHHHHHHHH--HHCSSTHH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH----HH--------H
T ss_pred             HcCCHHHHHHHHHHHH--HHCCCcHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH----HH--------H
Confidence            3445556666666544  34454322  1467889999999999999999999999887665432    11        5


Q ss_pred             ChHHHHHHHHHHh
Q 013807          333 RPKEARIMYEKLQ  345 (436)
Q Consensus       333 R~~EAiaLYkkL~  345 (436)
                      +..+|+..|+++.
T Consensus        76 ~~~~a~~~~~~~~   88 (99)
T 2kc7_A           76 MVMDILNFYNKDM   88 (99)
T ss_dssp             HHHHHHHHHCCTT
T ss_pred             HHHHHHHHHHHHh
Confidence            6677777777653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=91.63  E-value=0.54  Score=43.23  Aligned_cols=71  Identities=11%  Similarity=-0.030  Sum_probs=45.8

Q ss_pred             HHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHHHH
Q 013807          288 DSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFMFS  362 (436)
Q Consensus       288 k~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLlyi  362 (436)
                      ......|++.+|+.+|++|+..-+..    ..+...++.+|...|+.++|+..|++.. .||+-..--...-++|.
T Consensus       221 ~~~~~~~~~~~a~~~~~~al~~~~~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~  292 (472)
T 4g1t_A          221 KMREEGEEEGEGEKLVEEALEKAPGV----TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR  292 (472)
T ss_dssp             HCC------CHHHHHHHHHHHHCSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHHhCccH----HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            33445567777888888777765433    4566788999999999999999999974 78875443333334443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=90.42  E-value=0.88  Score=35.76  Aligned_cols=33  Identities=9%  Similarity=-0.086  Sum_probs=28.5

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccc
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL  316 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L  316 (436)
                      .+-.|..+|..|+|++|+.+|+++++..+. +.-
T Consensus        46 ~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~   78 (93)
T 3bee_A           46 LSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD   78 (93)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence            455699999999999999999999998877 433

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=89.73  E-value=3.7  Score=33.14  Aligned_cols=59  Identities=8%  Similarity=-0.042  Sum_probs=50.6

Q ss_pred             HHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCH
Q 013807          286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNA  350 (436)
Q Consensus       286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~  350 (436)
                      .|..++..+.+.+|+.+|++|.+.      =...++..|+++|..    ..+.++|+..|++-...-++
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~   93 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQ   93 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCH
Confidence            788888888899999999999876      246899999999998    89999999999998655443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=89.59  E-value=2.2  Score=41.10  Aligned_cols=58  Identities=7%  Similarity=0.060  Sum_probs=47.1

Q ss_pred             HhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 013807          291 MDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV  352 (436)
Q Consensus       291 merGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV  352 (436)
                      +..|++.+|...||+|++..|..    ..+-+.++..+...|+.++|+.+|++.. .||+.++
T Consensus        23 ~~~~~~~~a~~~~e~al~~~P~~----~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~l   81 (530)
T 2ooe_A           23 AQNQPIDKARKTYERLVAQFPSS----GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDL   81 (530)
T ss_dssp             HHSSCHHHHHHHHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHH
Confidence            67899999999999999988654    3344446777778899999999999995 6898664

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=88.75  E-value=0.92  Score=43.67  Aligned_cols=51  Identities=20%  Similarity=0.395  Sum_probs=40.1

Q ss_pred             CCchh-------hhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013807          293 SGKLK-------EALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS  346 (436)
Q Consensus       293 rGkYr-------~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s  346 (436)
                      .|++.       +|+..|++|++.+.++   ...+-+.++..++..|+.++|+.+|+++..
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~---~~~l~~~~~~~~~~~g~~~~A~~~~~~al~  349 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKK---NMLLYFAYADYEESRMKYEKVHSIYNRLLA  349 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence            68887       8999999999743332   245666788889999999999999999864

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=87.16  E-value=3.6  Score=39.13  Aligned_cols=48  Identities=10%  Similarity=0.108  Sum_probs=24.0

Q ss_pred             CCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHh----cCChHHHHHHHHHHhc
Q 013807          293 SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQS  346 (436)
Q Consensus       293 rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~s  346 (436)
                      .+++.+|+.+|++|.+.-      .-.+..+|+.+|..    .++.++|+.+|++...
T Consensus       200 ~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~  251 (490)
T 2xm6_A          200 ERNDAISAQWYRKSATSG------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE  251 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            455555555555554421      12445555555554    5555555555555543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=87.04  E-value=3.7  Score=39.06  Aligned_cols=63  Identities=13%  Similarity=0.044  Sum_probs=47.5

Q ss_pred             HHHHHHHHHh----CCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCHH
Q 013807          283 ALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNAL  351 (436)
Q Consensus       283 a~~~Gk~Ame----rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~e  351 (436)
                      .+..|..++.    .+++.+|+.+|++|.+.      =...++..|+.+|..    .++.++|+..|++....-+..
T Consensus        78 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~  148 (490)
T 2xm6_A           78 EYVLGLRYMNGEGVPQDYAQAVIWYKKAALK------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDS  148 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence            4455777777    88888899988888764      135778888888888    788889999888886544443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=85.62  E-value=3.4  Score=40.16  Aligned_cols=65  Identities=9%  Similarity=-0.058  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP  348 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP  348 (436)
                      ..+-.|..++..|+|.+|+..|+++++.-+  +.-.=++.+-++.+|-..||.+.|+.++++++ .+|
T Consensus       102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~--~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~  167 (310)
T 3mv2_B          102 ELYLLATAQAILGDLDKSLETCVEGIDNDE--AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE  167 (310)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTSSC--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCC--CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence            356779999999999999999999876544  23455788888999999999999999999996 577

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=84.70  E-value=1.3  Score=45.38  Aligned_cols=64  Identities=13%  Similarity=-0.033  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch---------------------hHHHHHHHHHHHhcCChHHHHHH
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---------------------GLAALQWSICQDSLHRPKEARIM  340 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---------------------GeaqLwLAiAydA~GR~~EAiaL  340 (436)
                      .-...+..++.-|+|.+||+.|++|..--.-+.-+.                     -+-...++-+|+..|+++|||.+
T Consensus       150 n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~l  229 (449)
T 1b89_A          150 NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITM  229 (449)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHH
Confidence            345668889999999999999999832111011111                     11122456789999999999999


Q ss_pred             HHHHh
Q 013807          341 YEKLQ  345 (436)
Q Consensus       341 YkkL~  345 (436)
                      +++--
T Consensus       230 Le~aL  234 (449)
T 1b89_A          230 LEAAL  234 (449)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            98863

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=84.02  E-value=5.5  Score=35.30  Aligned_cols=79  Identities=13%  Similarity=0.127  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHhCC---chhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHH
Q 013807          281 EKALKDGDSLMDSG---KLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRA  356 (436)
Q Consensus       281 eea~~~Gk~AmerG---kYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQA  356 (436)
                      +..|+-|-.+....   .+++++.+||.++..-.+  .-.=+.-..||++|=.+|+.++|+..+++|- ..|+-   .||
T Consensus        33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p--~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n---~QA  107 (152)
T 1pc2_A           33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSK--EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN---NQA  107 (152)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC---HHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--cchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHH
Confidence            45677888888877   888999999999886511  1345788999999999999999999999994 78854   577


Q ss_pred             HHHHHHHH
Q 013807          357 RQFMFSFQ  364 (436)
Q Consensus       357 krLlyiLE  364 (436)
                      +.|..-++
T Consensus       108 ~~Lk~~ie  115 (152)
T 1pc2_A          108 KELERLID  115 (152)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766665

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=83.83  E-value=6.5  Score=38.13  Aligned_cols=74  Identities=15%  Similarity=0.094  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchh-------------------HHHHHHHHHHHhcCChHHHH
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG-------------------LAALQWSICQDSLHRPKEAR  338 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG-------------------eaqLwLAiAydA~GR~~EAi  338 (436)
                      .+++..+..|..+...|...+|+..|+.|+.+... .-|.|                   .+...++-++-+.|++.+|+
T Consensus       113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG-~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~  191 (388)
T 2ff4_A          113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRG-PVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI  191 (388)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS-STTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            67889999999999999999999999999988732 22322                   23345667788999999999


Q ss_pred             HHHHHHh-cCCCHHH
Q 013807          339 IMYEKLQ-SHPNALV  352 (436)
Q Consensus       339 aLYkkL~-sHP~~eV  352 (436)
                      ..+++|. .||..|-
T Consensus       192 ~~l~~~~~~~P~~E~  206 (388)
T 2ff4_A          192 AELEALTFEHPYREP  206 (388)
T ss_dssp             HHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHhCCCCHH
Confidence            8888885 7998773

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=83.81  E-value=2.5  Score=42.41  Aligned_cols=68  Identities=18%  Similarity=0.063  Sum_probs=53.8

Q ss_pred             HHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHHHHH
Q 013807          289 SLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQFMF  361 (436)
Q Consensus       289 ~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkrLly  361 (436)
                      .++-.|++.+|+.++++|+.+=  ++   =.+-+.++.+|...|+.++|++.|++- .-.|...+-.-++.|.|
T Consensus       286 ~~l~~gd~d~A~~~l~rAl~Ln--~s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~~~l~F  354 (372)
T 3ly7_A          286 SALVKGKTDESYQAINTGIDLE--MS---WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIF  354 (372)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC--CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHHHHHSSS
T ss_pred             HHHhCCCHHHHHHHHHHHHhcC--CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHHHhCcee
Confidence            3455799999999999999994  33   234467899999999999999999776 57999887666665554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=83.23  E-value=1.9  Score=32.49  Aligned_cols=57  Identities=14%  Similarity=0.184  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch
Q 013807          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH  317 (436)
Q Consensus       256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG  317 (436)
                      +..+.+..|++-+  .++|..-.   ..+..|..++..|+|.+|+..|++|+++.+.....+
T Consensus        22 ~~~~A~~~~~~al--~~~p~~~~---a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~   78 (100)
T 3ma5_A           22 NASRALALFEELV--ETDPDYVG---TYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK   78 (100)
T ss_dssp             CHHHHHHHHHHHH--HHSTTCTH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred             CHHHHHHHHHHHH--HhCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchh
Confidence            3444555555444  33444322   467789999999999999999999998866554444

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=81.60  E-value=1.4  Score=45.11  Aligned_cols=52  Identities=17%  Similarity=0.023  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      .-...|..+++.|+|.+|+.+|.++            .-..-||.||-.+|+.++|+..|++..
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a------------~n~~~LA~~L~~Lg~yq~AVea~~KA~  175 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKAN  175 (449)
T ss_dssp             -------------CTTTHHHHHHHT------------TCHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh------------hhHHHHHHHHHHhccHHHHHHHHHHcC
Confidence            4567799999999999999999987            244557899999999999999999993

>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1

Probab=80.67  E-value=4.3  Score=36.58  Aligned_cols=67  Identities=16%  Similarity=0.203  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccC----ccchhHHH-HHHHHHHHhcCChHHHHHHHHHH
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK----SELHGLAA-LQWSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~----S~LGGeaq-LwLAiAydA~GR~~EAiaLYkkL  344 (436)
                      ..-..+|..|..+|+.|+|-+|=+.||.+-...+..    .-+.|.+| +--|+-+-..|+..=|..|+++-
T Consensus        30 ~~~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~A  101 (161)
T 2ijq_A           30 ETLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS  101 (161)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            345568999999999999999999999997666444    46889999 99999998999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	436
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.3
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.93
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.91
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.9
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.77
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.74
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.73
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.68
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.67
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.46
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.41
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.3
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.3
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.24
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.13
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.1
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.09
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	96.94
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	96.93
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	96.89
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	96.88
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.8
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.78
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.76
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.75
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.66
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.63
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.56
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.56
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	96.44
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.38
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	96.31
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	95.68
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	95.51
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	95.47
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	95.01
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	94.2
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	94.1
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	92.19
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	92.12
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	91.06
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	90.57
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	89.65
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	88.8
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	88.07
d2ijqa1	145	Hypothetical protein rrnAC1037 {Haloarcula marismo	84.8

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.2e-06  Score=67.03  Aligned_cols=72  Identities=11%  Similarity=0.036  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch---hHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHH
Q 013807          280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLHRPKEARIMYEKL-QSHPNAL  351 (436)
Q Consensus       280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~e  351 (436)
                      ++.-|+.|..+++.|+|.+|+++|++|+...+......   +.+--.|+.||...|+.++|+..|++. +-.|+-.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~   80 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence            34568999999999999999999999999877654322   566677999999999999999999996 5566643

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=1.9e-05  Score=63.27  Aligned_cols=61  Identities=15%  Similarity=0.272  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      ++..+.|..+|..|+|.+|+.+|++|+++-|.++    .+-..+++||..+|+.++|+..|++..
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~----~~~~~lg~~y~~~~~~~~Ai~~~~~al   65 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA----VYYTNRALCYLKMQQPEQALADCRRAL   65 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHhHHHHHhhhhhhhhhhHHHHHHH
Confidence            3445556666666666666666666666654432    333344666666666666666666654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.91  E-value=2.3e-05  Score=64.37  Aligned_cols=73  Identities=16%  Similarity=0.198  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHH-----------HHHHHHHHHhcCChHHHHHHHHHHh-
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLA-----------ALQWSICQDSLHRPKEARIMYEKLQ-  345 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGea-----------qLwLAiAydA~GR~~EAiaLYkkL~-  345 (436)
                      +.++...+.|..+|..|.|.+|+.+|.+|+..++....+..+.           -+.+|+||-.+|+.++|+..|++.. 
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            6788888999999999999999999999999988877665533           3458999999999999999999985 


Q ss_pred             cCCCH
Q 013807          346 SHPNA  350 (436)
Q Consensus       346 sHP~~  350 (436)
                      .+|+-
T Consensus        93 l~p~~   97 (168)
T d1kt1a1          93 LDSAN   97 (168)
T ss_dssp             HCTTC
T ss_pred             cccch
Confidence            46654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1.7e-05  Score=61.90  Aligned_cols=67  Identities=13%  Similarity=0.121  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ++++..+.|..+|..|+|.+|+..|++|+..-|..    ..+-..++.||...|+.++|+..|++.. .+|+
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~   69 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD   69 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc----hhhhhcccccccccccccccchhhhhHHHhccc
Confidence            46677788999999999999999999998876555    4577778899999999999999998885 4655

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.77  E-value=4.4e-05  Score=62.01  Aligned_cols=73  Identities=14%  Similarity=0.222  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchh------------HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG------------LAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG------------eaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      +++....+.|..+|..|+|.+|+..|++|+..++.......            .+.+.+++||-.+|++++|+..|++..
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al   94 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL   94 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccc
Confidence            56667788999999999999999999999988865543322            133459999999999999999999974


Q ss_pred             -cCCCH
Q 013807          346 -SHPNA  350 (436)
Q Consensus       346 -sHP~~  350 (436)
                       .||.-
T Consensus        95 ~~~p~~  100 (153)
T d2fbna1          95 KIDKNN  100 (153)
T ss_dssp             HHSTTC
T ss_pred             cccchh
Confidence             67754

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=0.0001  Score=58.04  Aligned_cols=102  Identities=19%  Similarity=0.149  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch---hHHHHHHHHHHH
Q 013807          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQD  329 (436)
Q Consensus       253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---GeaqLwLAiAyd  329 (436)
                      +..+..+.+..|.+-.  +++|..-   .-.+..|..++..|+|.+|++.|++|+++-+......   |.+-+.++.++.
T Consensus        16 ~~~~y~~Ai~~y~~al--~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~   90 (128)
T d1elra_          16 KKKDFDTALKHYDKAK--ELDPTNM---TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF   90 (128)
T ss_dssp             HTTCHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHH--HhCcccH---HHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHH
Confidence            4455677788888765  5667643   3467789999999999999999999999887766544   667788999999


Q ss_pred             hcCChHHHHHHHHHH-hcCCCHHHHHHHHHH
Q 013807          330 SLHRPKEARIMYEKL-QSHPNALVSKRARQF  359 (436)
Q Consensus       330 A~GR~~EAiaLYkkL-~sHP~~eVrKQAkrL  359 (436)
                      ++++.++|+.+|++. .-|+++++.+.-.++
T Consensus        91 ~~~~~~~A~~~~~kal~~~~~~~~~~~l~~~  121 (128)
T d1elra_          91 KEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA  121 (128)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            999999999999886 579999887665543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=0.00016  Score=57.99  Aligned_cols=95  Identities=11%  Similarity=0.023  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc
Q 013807          252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL  331 (436)
Q Consensus       252 aR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~  331 (436)
                      .+..+..+.+..|++-+  .++|..   +.--+..|..++..|++.+|++.|++|+++-+.    ...+-..++.||..+
T Consensus        21 ~~~~~y~~A~~~~~~al--~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~----~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          21 FKAKDYENAIKFYSQAI--ELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDKK----YIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHTTCHHHHHHHHHHHH--HHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHhhhcc--ccchhh---hhhhhhhHHHHHhccccchHHHHHHHHHHHccc----chHHHHHHHHHHHHc
Confidence            45556777778887666  555654   333567789999999999999999999887644    346778889999999


Q ss_pred             CChHHHHHHHHHHh-cCCC-HHHHHH
Q 013807          332 HRPKEARIMYEKLQ-SHPN-ALVSKR  355 (436)
Q Consensus       332 GR~~EAiaLYkkL~-sHP~-~eVrKQ  355 (436)
                      |+.++|+..|++.. .+|+ .++...
T Consensus        92 g~~~eA~~~~~~a~~~~p~~~~~~~~  117 (159)
T d1a17a_          92 GKFRAALRDYETVVKVKPHDKDAKMK  117 (159)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            99999999999986 4665 444333

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.68  E-value=0.00015  Score=56.09  Aligned_cols=77  Identities=19%  Similarity=0.157  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHHH
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQF  359 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkrL  359 (436)
                      +..|..|..+|..|+|.+|+..|++|+..-|.    .-++-.+|+.||...|+.++|+..|++. +-+|+-.-.-...-+
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~   92 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV   92 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccc----cchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHH
Confidence            34688999999999999999999999988654    3588899999999999999999999997 468875433333333


Q ss_pred             HH
Q 013807          360 MF  361 (436)
Q Consensus       360 ly  361 (436)
                      .|
T Consensus        93 ~y   94 (112)
T d1hxia_          93 SH   94 (112)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=7.7e-05  Score=61.52  Aligned_cols=71  Identities=20%  Similarity=0.287  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchh-----------HHHHHHHHHHHhcCChHHHHHHHHHHh-
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG-----------LAALQWSICQDSLHRPKEARIMYEKLQ-  345 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG-----------eaqLwLAiAydA~GR~~EAiaLYkkL~-  345 (436)
                      +.+....+.|..+|.+|+|.+|+..|++|++.++..+.+-.           .+-..+|.||-..|+.++|+..|++.. 
T Consensus        11 ~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~   90 (170)
T d1p5qa1          11 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE   90 (170)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh
Confidence            34555567788888888888888888888887776654332           233447777777888888888777774 


Q ss_pred             cCC
Q 013807          346 SHP  348 (436)
Q Consensus       346 sHP  348 (436)
                      .+|
T Consensus        91 ~~p   93 (170)
T d1p5qa1          91 LDS   93 (170)
T ss_dssp             HCT
T ss_pred             ccc
Confidence            455

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00017  Score=56.81  Aligned_cols=63  Identities=14%  Similarity=0.032  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      ++...-..|..+|..|+|.+|+.+|++|+++-+..    -.+...++.||-..|+.++|+..|++..
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al   65 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEKAI   65 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence            44556678999999999999999999999987654    3577789999999999999999999963

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=0.00051  Score=56.44  Aligned_cols=68  Identities=9%  Similarity=-0.067  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~  349 (436)
                      ..++.-|..|..++..|+|.+|+..|++|+++-|-.    -++-..++.||...|+.++|+..|++.. .+|+
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  103 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT  103 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC----HHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh
Confidence            455667888999999999999999999988876544    3456678888888888888888888875 4665

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00037  Score=59.23  Aligned_cols=82  Identities=16%  Similarity=0.193  Sum_probs=60.6

Q ss_pred             HHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHH
Q 013807          263 AYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYE  342 (436)
Q Consensus       263 aYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYk  342 (436)
                      .|.+.....-+...+ ..+..|+.|..++..|+|.+|+..|++|++.=|.    ..++-.+++.||...|+.++|+..|+
T Consensus         3 ~~~~~~~~~~~n~~~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~~~~~~A~~~~~   77 (323)
T d1fcha_           3 TYDKGYQFEEENPLR-DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK----HMEAWQYLGTTQAENEQELLAISALR   77 (323)
T ss_dssp             HHHCCCCCCSSCTTT-TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT----CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             chHHhHhhcccCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            455555555554322 1223688899999999999999999999876544    35677888999999999999999998


Q ss_pred             HHh-cCCC
Q 013807          343 KLQ-SHPN  349 (436)
Q Consensus       343 kL~-sHP~  349 (436)
                      ++. .+|+
T Consensus        78 ~al~~~p~   85 (323)
T d1fcha_          78 RCLELKPD   85 (323)
T ss_dssp             HHHHHCTT
T ss_pred             hhhccccc
Confidence            874 4665

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.30  E-value=0.00039  Score=55.97  Aligned_cols=68  Identities=16%  Similarity=0.057  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch--------hHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--------GLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG--------GeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      .++...+..|...|..|+|.+|+..|++|+++.+......        ..+-..++.||..+|+.++|+..|++-.
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al   82 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   82 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence            4555677889999999999999999999999876554322        3455568999999999999998888753

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=0.00037  Score=55.52  Aligned_cols=86  Identities=12%  Similarity=0.058  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHh
Q 013807          251 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS  330 (436)
Q Consensus       251 aaR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA  330 (436)
                      ..+..+..+.+..|.+-+  +++|..-   ..-+..|..++..|+|.+|+..|++|+++-|..    ..+-+.++.||..
T Consensus        14 ~~~~g~~~~Ai~~~~kal--~~~p~~~---~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~----~~a~~~lg~~~~~   84 (201)
T d2c2la1          14 LFVGRKYPEAAACYGRAI--TRNPLVA---VYYTNRALCYLKMQQPEQALADCRRALELDGQS----VKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHH--HHCSCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC----HHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHH--HhCCCCH---HHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc----HHHHHHHHHHHHH
Confidence            455667788888898766  5566643   346678999999999999999999999886654    3467889999999


Q ss_pred             cCChHHHHHHHHHHh
Q 013807          331 LHRPKEARIMYEKLQ  345 (436)
Q Consensus       331 ~GR~~EAiaLYkkL~  345 (436)
                      +|+.++|+..|++..
T Consensus        85 l~~~~~A~~~~~~al   99 (201)
T d2c2la1          85 MESYDEAIANLQRAY   99 (201)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999999863

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.13  E-value=0.00041  Score=55.81  Aligned_cols=90  Identities=17%  Similarity=0.151  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHhhcCCcCCcch---------HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch------
Q 013807          253 KEERTRQLLAAYKKSVGLNVDPKL---------KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------  317 (436)
Q Consensus       253 R~~rtke~LaaYrk~~Gl~Vdp~~---------k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG------  317 (436)
                      +..+..+.+..|++-+-|  .+..         -..+..-...|..++..|+|.+|+..+++++...+....+.      
T Consensus        21 ~~g~y~~Ai~~y~~Al~i--~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~   98 (156)
T d2hr2a1          21 VAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL   98 (156)
T ss_dssp             HHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred             HcCCHHHHHHHHHHHHHh--ChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence            334577788888876532  2221         11233344679999999999999999999999877655544      


Q ss_pred             -hHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807          318 -GLAALQWSICQDSLHRPKEARIMYEKL  344 (436)
Q Consensus       318 -GeaqLwLAiAydA~GR~~EAiaLYkkL  344 (436)
                       ..+...++.||..+||.++|+..|++-
T Consensus        99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~A  126 (156)
T d2hr2a1          99 WISAVYSRALALDGLGRGAEAMPEFKKV  126 (156)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence             345667899999999999999999985

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.0017  Score=50.15  Aligned_cols=90  Identities=18%  Similarity=0.144  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHh
Q 013807          251 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS  330 (436)
Q Consensus       251 aaR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA  330 (436)
                      ..+..+..+.+..|.+-.  .++|..-.   --+..|..++..|+|.+|+..|++|+..-+..    .++.++++.||..
T Consensus        13 ~~~~g~~~eAi~~~~~al--~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~g~~~~~   83 (117)
T d1elwa_          13 ALSVGNIDDALQCYSEAI--KLDPHNHV---LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW----GKGYSRKAAALEF   83 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHH--HHCTTCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHH--hcCCcchh---hhhcccccccccccccccchhhhhHHHhccch----hhHHHHHHHHHHH
Confidence            455567778888888765  55666543   36677999999999999999999999887653    4688999999999


Q ss_pred             cCChHHHHHHHHHHh-cCCC
Q 013807          331 LHRPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       331 ~GR~~EAiaLYkkL~-sHP~  349 (436)
                      +|+.++|+..|++.. .-|+
T Consensus        84 ~~~~~~A~~~~~~a~~~~p~  103 (117)
T d1elwa_          84 LNRFEEAKRTYEEGLKHEAN  103 (117)
T ss_dssp             TTCHHHHHHHHHHHHTTCTT
T ss_pred             ccCHHHHHHHHHHHHHhCCC
Confidence            999999999999996 4555

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00037  Score=58.11  Aligned_cols=84  Identities=10%  Similarity=-0.013  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC
Q 013807          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  332 (436)
Q Consensus       253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  332 (436)
                      +.-+..+.+..|++-.  ..+|.   .....+..|..++..|+|.+|+.+|++|++.-|..    .++...++.||...|
T Consensus        11 ~~G~~~~A~~~~~~~l--~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_          11 QAGDFEAAERHCMQLW--RQEPD---NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL----AEAYSNLGNVYKERG   81 (388)
T ss_dssp             HHTCHHHHHHHHHHHH--HHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHHH--HhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHhhhhc
Confidence            3445667777777554  44443   24556777888888899999999999888876543    466777888888899


Q ss_pred             ChHHHHHHHHHHh
Q 013807          333 RPKEARIMYEKLQ  345 (436)
Q Consensus       333 R~~EAiaLYkkL~  345 (436)
                      +.++|+..|+++.
T Consensus        82 ~~~~A~~~~~~~~   94 (388)
T d1w3ba_          82 QLQEAIEHYRHAL   94 (388)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             ccccccccccccc
Confidence            9999998888885

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.94  E-value=0.0023  Score=51.53  Aligned_cols=73  Identities=14%  Similarity=0.040  Sum_probs=60.9

Q ss_pred             HHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC-CHHHHHHHHHHH
Q 013807          284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP-NALVSKRARQFM  360 (436)
Q Consensus       284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP-~~eVrKQAkrLl  360 (436)
                      +..|..++..|+|.+|+.+|++|+..-|.++    .+..+++.||-.+|+.++|+..|++.. -+| |.+++.+-..+.
T Consensus        71 ~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~----ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          71 LNLATCYNKNKDYPKAIDHASKVLKIDKNNV----KALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHhcccchhhhhhhccccccchhh----hhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3579999999999999999999999876664    688999999999999999999999996 566 466665544443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0013  Score=54.79  Aligned_cols=58  Identities=17%  Similarity=0.235  Sum_probs=30.0

Q ss_pred             HHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013807          287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP  348 (436)
Q Consensus       287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP  348 (436)
                      |..++..|+|.+|+.+|++|++.-|..    ..+.+.++.||...|+.++|+..|++.. -+|
T Consensus       312 ~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P  370 (388)
T d1w3ba_         312 ANIKREQGNIEEAVRLYRKALEVFPEF----AAAHSNLASVLQQQGKLQEALMHYKEAIRISP  370 (388)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHTTSCTTC----HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            445555555555555555555443321    3444555555555555555555555542 344

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.0049  Score=51.45  Aligned_cols=91  Identities=11%  Similarity=0.027  Sum_probs=58.6

Q ss_pred             HHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCcc------------chhHHHHHH
Q 013807          257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE------------LHGLAALQW  324 (436)
Q Consensus       257 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~------------LGGeaqLwL  324 (436)
                      ..+.+..|.+-+  .+||..-   ..-+..|..++..|+|.+|+..|++|+..+..+..            ..+++...+
T Consensus        52 ~~~A~~~~~kAl--~ldp~~~---~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~  126 (192)
T d1hh8a_          52 MTEAEKAFTRSI--NRDKHLA---VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI  126 (192)
T ss_dssp             HHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHH
T ss_pred             chhHHHHHHHHH--HHhhhhh---hhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHH
Confidence            444555565543  4555542   23456677788888888888888888766544322            125667778


Q ss_pred             HHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 013807          325 SICQDSLHRPKEARIMYEKLQ-SHPNALV  352 (436)
Q Consensus       325 AiAydA~GR~~EAiaLYkkL~-sHP~~eV  352 (436)
                      ++||..+|+.++|+..|++-. .||....
T Consensus       127 a~~~~~~~~~~~A~~~l~~A~~~~~~~~~  155 (192)
T d1hh8a_         127 AFMYAKKEEWKKAEEQLALATSMKSEPRH  155 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCcch
Confidence            888888888888888877754 4666543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.0037  Score=51.14  Aligned_cols=87  Identities=17%  Similarity=0.123  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCCh
Q 013807          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP  334 (436)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~  334 (436)
                      .+..+.+..|++-+  .++|..-   +.-+..|..++..|+|.+|+..|++|+.+-+..    ..+.+.++.||-..|+.
T Consensus        51 g~~~~A~~~~~~al--~l~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~  121 (259)
T d1xnfa_          51 GLRALARNDFSQAL--AIRPDMP---EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----NYAHLNRGIALYYGGRD  121 (259)
T ss_dssp             TCHHHHHHHHHHHH--HHCCCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----THHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHHhh--ccCCCCH---HHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhh----hhhHHHHHHHHHHHhhH
Confidence            34566677777665  4566543   335678999999999999999999999987653    46788999999999999


Q ss_pred             HHHHHHHHHHh-cCCCH
Q 013807          335 KEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       335 ~EAiaLYkkL~-sHP~~  350 (436)
                      ++|+..|++.. ..|+.
T Consensus       122 ~~A~~~~~~al~~~p~~  138 (259)
T d1xnfa_         122 KLAQDDLLAFYQDDPND  138 (259)
T ss_dssp             HHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhhcccc
Confidence            99999999985 57753

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.80  E-value=0.021  Score=46.04  Aligned_cols=71  Identities=10%  Similarity=0.023  Sum_probs=57.6

Q ss_pred             HHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC-HHHHHHHHHH
Q 013807          285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN-ALVSKRARQF  359 (436)
Q Consensus       285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~-~eVrKQAkrL  359 (436)
                      ..|..++..|+|.+|+.++++|+.+-|.+    ..+.++++.||..+|+.++|+..|++.. -+|+ .++.+.-..+
T Consensus        69 Nla~~~~~l~~~~~Ai~~~~~al~l~p~~----~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  141 (168)
T d1kt1a1          69 NLAMCYLKLREYTKAVECCDKALGLDSAN----EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMC  141 (168)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHhhhcccchhhhhhhhhcccch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            36888999999999999999999986544    4788899999999999999999999996 4654 4444433333

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.78  E-value=0.0049  Score=51.91  Aligned_cols=76  Identities=14%  Similarity=0.063  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchh-------------------HHHHHHHHHHHhcCChHHHH
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG-------------------LAALQWSICQDSLHRPKEAR  338 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG-------------------eaqLwLAiAydA~GR~~EAi  338 (436)
                      .+++..+..|..+++.|++.+|+++|.+|+.+.... -+.+                   .+...++.||...|++++|+
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~-~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGP-VLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS-TTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccc-ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            678899999999999999999999999999986532 1111                   45567899999999999999


Q ss_pred             HHHHHHh-cCCCHHHHH
Q 013807          339 IMYEKLQ-SHPNALVSK  354 (436)
Q Consensus       339 aLYkkL~-sHP~~eVrK  354 (436)
                      ..|+++. .||.-+---
T Consensus        88 ~~~~~al~~~P~~e~~~  104 (179)
T d2ff4a2          88 AELEALTFEHPYREPLW  104 (179)
T ss_dssp             HHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHHhCCccHHHH
Confidence            9999995 799877433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.0037  Score=51.12  Aligned_cols=95  Identities=13%  Similarity=0.081  Sum_probs=68.8

Q ss_pred             HHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC-CHHHHHHHHHHHHH
Q 013807          285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP-NALVSKRARQFMFS  362 (436)
Q Consensus       285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP-~~eVrKQAkrLlyi  362 (436)
                      ..|..++..|+|.+|+.+|++|+.+-|.++    .+..+++.||..+|+.++|+..|++.. -+| |+.+...-.++.-.
T Consensus        67 nla~~y~k~~~~~~A~~~~~~al~~~p~~~----~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          67 NLAMCHLKLQAFSAAIESCNKALELDSNNE----KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhcccccchhhhhhhccccch----hhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            468889999999999999999999976654    467889999999999999999999985 577 56655544443322


Q ss_pred             HHhhhhhhhcccCCCCcchHHHHHHhhc
Q 013807          363 FQAMEMMKVRSSSDKNTDYRNFFEAFVE  390 (436)
Q Consensus       363 LEAp~llKv~~~~~~~t~Yd~Yf~~f~~  390 (436)
                      +..-.       --...-|...|+...+
T Consensus       143 ~~~~~-------~~e~~~~~~~f~~~~~  163 (170)
T d1p5qa1         143 IRRQL-------AREKKLYANMFERLAE  163 (170)
T ss_dssp             HHHHH-------HHHHHHHHHHHHHHHH
T ss_pred             HHHHH-------HHHHHHHHHHHHHHhc
Confidence            22111       0012347777776654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.75  E-value=0.0013  Score=50.54  Aligned_cols=85  Identities=11%  Similarity=-0.040  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHh
Q 013807          251 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS  330 (436)
Q Consensus       251 aaR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA  330 (436)
                      ..+..+..+.+..|++-+  .++|..   .+.-+..|..++..|++.+|+.+|++|+++-|..    .++-+-|+.||..
T Consensus        26 ~~~~g~~~~A~~~~~~al--~~~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~la~~y~~   96 (112)
T d1hxia_          26 MLKLANLAEAALAFEAVC--QKEPER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTN   96 (112)
T ss_dssp             HHHTTCHHHHHHHHHHHH--HHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHhhhc--cccccc---chhhhhhhhhhhhhhhHHHhhccccccccccccc----ccchHHHHHHHHH
Confidence            345556777777777654  556654   3446778999999999999999999999998664    4678889999999


Q ss_pred             cCChHHHHHHHHHH
Q 013807          331 LHRPKEARIMYEKL  344 (436)
Q Consensus       331 ~GR~~EAiaLYkkL  344 (436)
                      .|+.++|+..+++.
T Consensus        97 ~g~~~~A~~~l~~~  110 (112)
T d1hxia_          97 EHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999999885

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.0028  Score=51.60  Aligned_cols=60  Identities=7%  Similarity=-0.023  Sum_probs=45.0

Q ss_pred             HHHHHHhCCchhhhhhHHHHHHhhcccCcc-chhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807          286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSE-LHGLAALQWSICQDSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~-LGGeaqLwLAiAydA~GR~~EAiaLYkkL~  345 (436)
                      .++.++..|++.+|+++|++|++..+.... ....+...++.||...|+.++|+..|++..
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~   78 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE   78 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            477888888888888888888887765432 234556667888888888888888888763

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.63  E-value=0.0077  Score=50.66  Aligned_cols=77  Identities=9%  Similarity=0.075  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH--------hcCCCHHH
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL--------QSHPNALV  352 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL--------~sHP~~eV  352 (436)
                      +.....+..+...|+|.+|+..+++++..=|..    -.+...|..||-..||+.+|+..|+++        --.|.+++
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~----e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYR----EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            344566999999999999999999999987654    456677899999999999999999996        35788888


Q ss_pred             HHHHHHHHH
Q 013807          353 SKRARQFMF  361 (436)
Q Consensus       353 rKQAkrLly  361 (436)
                      +.-..+|+-
T Consensus       144 ~~l~~~il~  152 (179)
T d2ff4a2         144 RALNERILR  152 (179)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            777777653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.56  E-value=0.011  Score=47.41  Aligned_cols=72  Identities=13%  Similarity=0.043  Sum_probs=58.1

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC-CHHHHHHHHH
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP-NALVSKRARQ  358 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP-~~eVrKQAkr  358 (436)
                      .+..|..++..|+|.+|+..|++|+++-+..    .++.++++.||..+|+.++|+.-|++.. ..| +.++...-..
T Consensus        80 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~----~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~  153 (169)
T d1ihga1          80 VLNIGACKLKMSDWQGAVDSCLEALEIDPSN----TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccchhhhhhhhhhhhhhhh----hhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            4456899999999999999999999886544    4678999999999999999999999985 344 4555444333

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.56  E-value=0.0032  Score=50.73  Aligned_cols=72  Identities=15%  Similarity=0.094  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccc------------hhHHHHHHHHHHHhcCChHHHHHHHHHHh-
Q 013807          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL------------HGLAALQWSICQDSLHRPKEARIMYEKLQ-  345 (436)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L------------GGeaqLwLAiAydA~GR~~EAiaLYkkL~-  345 (436)
                      .++.....|..++..|+|.+|+..|.+|+..+......            --.+.+.++.||-.+|+.++||..|++.. 
T Consensus        26 ~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  105 (169)
T d1ihga1          26 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  105 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh
Confidence            34445567999999999999999999998765433322            12344568999999999999999999986 


Q ss_pred             cCCCH
Q 013807          346 SHPNA  350 (436)
Q Consensus       346 sHP~~  350 (436)
                      -+|+-
T Consensus       106 ~~p~~  110 (169)
T d1ihga1         106 IDPSN  110 (169)
T ss_dssp             TCTTC
T ss_pred             hhhhh
Confidence            46653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0066  Score=50.61  Aligned_cols=80  Identities=13%  Similarity=0.043  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCC
Q 013807          254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  333 (436)
Q Consensus       254 ~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  333 (436)
                      .....+.|..|.+     +++..   ++-.+..|..++..|+|.+|+..|++|+++=+..    ..+-..+++||...|+
T Consensus        18 ~~d~~~Al~~~~~-----i~~~~---~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~----~~a~~~~g~~~~~~g~   85 (192)
T d1hh8a_          18 KKDWKGALDAFSA-----VQDPH---SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----AVAYFQRGMLYYQTEK   85 (192)
T ss_dssp             TTCHHHHHHHHHT-----SSSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHh-----cCCCC---HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh----hhhHHHHHHHHHhhcc
Confidence            3346677888874     22322   2346889999999999999999999999875432    5677889999999999


Q ss_pred             hHHHHHHHHHHh
Q 013807          334 PKEARIMYEKLQ  345 (436)
Q Consensus       334 ~~EAiaLYkkL~  345 (436)
                      .++|+..|++..
T Consensus        86 ~~~A~~~~~kAl   97 (192)
T d1hh8a_          86 YDLAIKDLKEAL   97 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999863

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.013  Score=49.30  Aligned_cols=90  Identities=13%  Similarity=0.104  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC
Q 013807          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH  332 (436)
Q Consensus       253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G  332 (436)
                      +.....+.+..|.+-..  ++|... .....+..|..++..|+|.+|+.+|++++..-+..    .++...++.||...|
T Consensus       148 ~~~~~~~a~~~~~~al~--~~p~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g  220 (323)
T d1fcha_         148 SDSLFLEVKELFLAAVR--LDPTSI-DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND----YLLWNKLGATLANGN  220 (323)
T ss_dssp             HHHHHHHHHHHHHHHHH--HSTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT
T ss_pred             HhhHHHHHHHHHHHHHH--Hhhccc-ccccchhhHHHHHHHHHHhhhhccccccccccccc----ccchhhhhhcccccc
Confidence            33444455555554432  233211 12334677999999999999999999999876543    567777999999999


Q ss_pred             ChHHHHHHHHHHh-cCCC
Q 013807          333 RPKEARIMYEKLQ-SHPN  349 (436)
Q Consensus       333 R~~EAiaLYkkL~-sHP~  349 (436)
                      +.++|+..|++.. .+|+
T Consensus       221 ~~~~A~~~~~~al~~~p~  238 (323)
T d1fcha_         221 QSEEAVAAYRRALELQPG  238 (323)
T ss_dssp             CHHHHHHHHHHHHHHCTT
T ss_pred             cchhHHHHHHHHHHHhhc
Confidence            9999999999974 5665

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0075  Score=47.88  Aligned_cols=99  Identities=10%  Similarity=0.103  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhC---CchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHH
Q 013807          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDS---GKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQD  329 (436)
Q Consensus       253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~Amer---GkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAyd  329 (436)
                      ..+...+....|++-.  .++|..-   +..+.-|..++..   |++++|+..|++++..-+...  +=++-+.|++||.
T Consensus        11 ~~~~l~~Ae~~Y~~aL--~~~p~~~---~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~--~~~~~~~Lg~~y~   83 (122)
T d1nzna_          11 SVEDLLKFEKKFQSEK--AAGSVSK---STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE--QRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHH--HHSCCCH---HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH--hhCCCCH---HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCch--HHHHHHHHHHHHH
Confidence            3445555566777665  3344432   3367778888864   456679999999887543322  2245677999999


Q ss_pred             hcCChHHHHHHHHHHh-cCCCHHHHHHHHHHHH
Q 013807          330 SLHRPKEARIMYEKLQ-SHPNALVSKRARQFMF  361 (436)
Q Consensus       330 A~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLly  361 (436)
                      ..|+.++|+..|+++. --|+-.   +|..|+-
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~---~A~~l~~  113 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNN---QAKELER  113 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCH---HHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCH---HHHHHHH
Confidence            9999999999999995 567653   4555543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.047  Score=51.47  Aligned_cols=73  Identities=15%  Similarity=0.104  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh--cCCCHHHHHHHHH
Q 013807          282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ--SHPNALVSKRARQ  358 (436)
Q Consensus       282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~--sHP~~eVrKQAkr  358 (436)
                      ..+..|..+..+|+|.+|+.+|++|+++-|.    .|.+..+|+++|...|++.+|+.-|.+-.  .+|++..+..=.+
T Consensus       154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~----~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~  228 (497)
T d1ya0a1         154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS----NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK  228 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC----chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            4566799999999999999999999999864    46778999999999999999999998874  6888876655433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.51  E-value=0.011  Score=50.95  Aligned_cols=71  Identities=17%  Similarity=0.081  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHh-CCchhhhhhHHHHHHhhccc--CccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807          280 CEKALKDGDSLMD-SGKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       280 ~eea~~~Gk~Ame-rGkYr~AV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (436)
                      +......|..+.. .|+|.+|+++|++|+++...  ++..-+.+...++.+|-..|+.++|+.+|+++. .++..
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~  191 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc
Confidence            3344455666644 59999999999999876543  334557888999999999999999999999986 44443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=95.47  E-value=0.03  Score=45.26  Aligned_cols=89  Identities=13%  Similarity=-0.065  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCcc--chhHHHHHHHHHHHhcCC
Q 013807          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE--LHGLAALQWSICQDSLHR  333 (436)
Q Consensus       256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~--LGGeaqLwLAiAydA~GR  333 (436)
                      +..+.+.-|++-..+.-+......+...+..|..++..|+|.+|+.+|+.|++..+....  .-..+.+.++.+|...|+
T Consensus        27 ~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (366)
T d1hz4a_          27 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF  106 (366)
T ss_dssp             CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence            344556666655433222223345556677899999999999999999999887655433  234567788999999999


Q ss_pred             hHHHHHHHHHH
Q 013807          334 PKEARIMYEKL  344 (436)
Q Consensus       334 ~~EAiaLYkkL  344 (436)
                      ..+|+..|.+.
T Consensus       107 ~~~a~~~~~~a  117 (366)
T d1hz4a_         107 LQTAWETQEKA  117 (366)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998875

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=95.01  E-value=0.023  Score=50.68  Aligned_cols=67  Identities=10%  Similarity=-0.010  Sum_probs=56.6

Q ss_pred             HHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHH
Q 013807          286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRA  356 (436)
Q Consensus       286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQA  356 (436)
                      +++.+|..|+|.+|+..|++++..-|.+.    .+...|+.+|-..|+.++|+..|++.. .+|+...--+.
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~~P~d~----~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~   69 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKASPKDA----SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ   69 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHTCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            57899999999999999999999887765    457788899999999999999999996 68865554443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.20  E-value=0.18  Score=43.17  Aligned_cols=89  Identities=18%  Similarity=0.098  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchh---HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHH
Q 013807          279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG---LAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSK  354 (436)
Q Consensus       279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG---eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrK  354 (436)
                      .+...+..|..+...|+|.+|+.+|+++...-.....+..   .+.+..++||-..|+...|+..+++.. -+|.-.-++
T Consensus       157 ~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sr  236 (290)
T d1qqea_         157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR  236 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred             hhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchH
Confidence            3455677899999999999999999999887665544433   344567899999999999999999985 677655554


Q ss_pred             HHHHHHHHHHhhh
Q 013807          355 RARQFMFSFQAME  367 (436)
Q Consensus       355 QAkrLlyiLEAp~  367 (436)
                      +.+-+.=.++|.+
T Consensus       237 e~~~l~~l~~a~~  249 (290)
T d1qqea_         237 ESNFLKSLIDAVN  249 (290)
T ss_dssp             -HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4433333345554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.10  E-value=0.16  Score=40.42  Aligned_cols=96  Identities=13%  Similarity=0.076  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHh----------CCchhhhhhHHHHHHhhcccCccchhHHH
Q 013807          252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMD----------SGKLKEALPFYEKVMNKMVFKSELHGLAA  321 (436)
Q Consensus       252 aR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~Ame----------rGkYr~AV~~lEkA~~~v~~~S~LGGeaq  321 (436)
                      +|-.+..+.+..|.+-+  .+||..-..   .+..|..++.          .+++.+|+.+|++|+++=|..    .++-
T Consensus         8 ~r~~~fe~A~~~~e~al--~~~P~~~~~---~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~----~~a~   78 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTY--KSNPLDADN---LTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK----DEAV   78 (145)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHCTTCHHH---HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC----HHHH
T ss_pred             HHHccHHHHHHHHHHHH--hhCCcchHH---HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh----hHHH
Confidence            44556777777787664  667775433   4556666654          355678999999999876544    4567


Q ss_pred             HHHHHHHHhcCC-----------hHHHHHHHHHHh-cCCCHHHHHHH
Q 013807          322 LQWSICQDSLHR-----------PKEARIMYEKLQ-SHPNALVSKRA  356 (436)
Q Consensus       322 LwLAiAydA~GR-----------~~EAiaLYkkL~-sHP~~eVrKQA  356 (436)
                      .+|++||...|+           .++|+..|++.. -+|+-.+-+++
T Consensus        79 ~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~  125 (145)
T d1zu2a1          79 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS  125 (145)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHH
Confidence            778888877664           689999999985 78887665544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.19  E-value=0.16  Score=44.81  Aligned_cols=64  Identities=8%  Similarity=-0.081  Sum_probs=51.5

Q ss_pred             HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807          283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~  350 (436)
                      -+..|..++..|+|.+|++.|++|+++-+.+.    .+-..++.||..+|+.++|+..|++.. .||+-
T Consensus       115 ~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~----~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n  179 (315)
T d2h6fa1         115 WHHRRVLVEWLRDPSQELEFIADILNQDAKNY----HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN  179 (315)
T ss_dssp             HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HHHHhHHHHhhccHHHHHHHHhhhhhhhhcch----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc
Confidence            34458888888999999999999988766553    456668889999999999999999985 67763

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=92.12  E-value=0.28  Score=40.47  Aligned_cols=59  Identities=15%  Similarity=0.192  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHh----cCChHHHHHHHHHHh
Q 013807          281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQ  345 (436)
Q Consensus       281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~  345 (436)
                      +..+..|..++.+|+|.+|+.+|++|.+.   +   ..+++..|+++|..    ......|+..|++..
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~---g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~   65 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDL---K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC   65 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHC---C---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccc
Confidence            46789999999999999999999999764   1   35788889999987    456778888888875

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.06  E-value=0.18  Score=44.33  Aligned_cols=87  Identities=9%  Similarity=0.082  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCc-hhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCC
Q 013807          255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGK-LKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR  333 (436)
Q Consensus       255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGk-Yr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR  333 (436)
                      ++..+.|..|.+-.  +++|.....   -+-.|..+...|+ |.+|+.+|++|++.-+..    ..+-..++.||..+|+
T Consensus        57 e~~~~Al~~~~~ai--~lnP~~~~a---~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~----~~a~~~~~~~~~~l~~  127 (315)
T d2h6fa1          57 ERSERAFKLTRDAI--ELNAANYTV---WHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN----YQVWHHRRVLVEWLRD  127 (315)
T ss_dssp             CCCHHHHHHHHHHH--HHCTTCHHH---HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTC
T ss_pred             CchHHHHHHHHHHH--HHCCCChHH---HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh----hhHHHHHhHHHHhhcc
Confidence            34455556665443  556665544   3556888888776 999999999999887654    4567778999999999


Q ss_pred             hHHHHHHHHHHh-cCCCH
Q 013807          334 PKEARIMYEKLQ-SHPNA  350 (436)
Q Consensus       334 ~~EAiaLYkkL~-sHP~~  350 (436)
                      .++|+..|++.. .+|.-
T Consensus       128 ~~eAl~~~~kal~~dp~n  145 (315)
T d2h6fa1         128 PSQELEFIADILNQDAKN  145 (315)
T ss_dssp             CTTHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHhhhhhhhhcc
Confidence            999999999985 56653

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.57  E-value=0.2  Score=39.79  Aligned_cols=78  Identities=12%  Similarity=0.187  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCc-----------hhhhhhHHHHHHhhcccCccchhHHH
Q 013807          253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGK-----------LKEALPFYEKVMNKMVFKSELHGLAA  321 (436)
Q Consensus       253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGk-----------Yr~AV~~lEkA~~~v~~~S~LGGeaq  321 (436)
                      ..+...+.+..|++-+  .++|..-..   .+..|..+++.|+           |.+|+++|++|++.-|-+.       
T Consensus        53 ~~~~~~~Ai~~~~kAl--~l~P~~~~a---~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~-------  120 (145)
T d1zu2a1          53 AKQMIQEAITKFEEAL--LIDPKKDEA---VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT-------  120 (145)
T ss_dssp             HHHHHHHHHHHHHHHH--HHCTTCHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH-------
T ss_pred             HHHHHHHHHHHHHHHH--HhcchhhHH---HhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHH-------
Confidence            4456778888888776  777875443   5667888877765           7899999999999887653       


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhc
Q 013807          322 LQWSICQDSLHRPKEARIMYEKLQS  346 (436)
Q Consensus       322 LwLAiAydA~GR~~EAiaLYkkL~s  346 (436)
                          +++.++++...|..+|..+.+
T Consensus       121 ----~~~~~L~~~~ka~~~~~e~~k  141 (145)
T d1zu2a1         121 ----HYLKSLEMTAKAPQLHAEAYK  141 (145)
T ss_dssp             ----HHHHHHHHHHTHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHH
Confidence                344555555566666666543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.65  E-value=0.52  Score=36.76  Aligned_cols=62  Identities=8%  Similarity=0.069  Sum_probs=48.5

Q ss_pred             HHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCCh---HHHHHHHHHHhc-CCCHH
Q 013807          286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP---KEARIMYEKLQS-HPNAL  351 (436)
Q Consensus       286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~---~EAiaLYkkL~s-HP~~e  351 (436)
                      ....++..+.|.+|.+.|++|+..-+.    .-++.+.+|.||-..++.   ++||.+|+++.. .|++.
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~----~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~   70 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSV----SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE   70 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCch
Confidence            345677888999999999999997655    346889999999765554   469999999864 56543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=88.80  E-value=0.43  Score=42.19  Aligned_cols=83  Identities=14%  Similarity=-0.006  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHh
Q 013807          251 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS  330 (436)
Q Consensus       251 aaR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA  330 (436)
                      +.++-+..+.++.|++-+  ..+|..-   +..+..|+.++..|++.+|+..|+.++++-|....    +...++.++.+
T Consensus         6 aL~~G~l~eAl~~l~~al--~~~P~d~---~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~----~~~~l~~ll~a   76 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAI--KASPKDA---SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP----GASQLRHLVKA   76 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHH--HTCTTCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH----HHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHH--HHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHh
Confidence            334456677788887665  4455543   33778899999999999999999999988764332    23333444444


Q ss_pred             cCChHHHHHHHH
Q 013807          331 LHRPKEARIMYE  342 (436)
Q Consensus       331 ~GR~~EAiaLYk  342 (436)
                      .++++++.+-++
T Consensus        77 ~~~~~~a~~~~~   88 (264)
T d1zbpa1          77 AQARKDFAQGAA   88 (264)
T ss_dssp             HHHHHHHTTSCC
T ss_pred             ccccHHHHHHhh
Confidence            444444444433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.07  E-value=0.66  Score=36.11  Aligned_cols=64  Identities=22%  Similarity=0.288  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHH
Q 013807          256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQ  328 (436)
Q Consensus       256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAy  328 (436)
                      +..+.+..|++-+  .++|..-   +..+..|..++..|+|.+|+..|++++.+-+.+.    ++...+..|.
T Consensus        59 ~~~~A~~~~~kal--~~~p~~~---~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~----~~~~~l~~~~  122 (159)
T d1a17a_          59 CYGYALGDATRAI--ELDKKYI---KGYYRRAASNMALGKFRAALRDYETVVKVKPHDK----DAKMKYQECN  122 (159)
T ss_dssp             CHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHH
T ss_pred             ccchHHHHHHHHH--HHcccch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHH
Confidence            4455666666665  4556543   3367789999999999999999999999876553    4455555554

>d2ijqa1 a.246.2.1 (A:14-158) Hypothetical protein rrnAC1037 {Haloarcula marismortui [TaxId: 2238]}

class: All alpha proteins
fold: Hyaluronidase domain-like
superfamily: TTHA0068-like
family: TTHA0068-like
domain: Hypothetical protein rrnAC1037
species: Haloarcula marismortui [TaxId: 2238]

Probab=84.80  E-value=1.1  Score=37.87  Aligned_cols=68  Identities=16%  Similarity=0.221  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc----cchhHHHHHHHHHH-HhcCChHHHHHHHHHHh
Q 013807          278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS----ELHGLAALQWSICQ-DSLHRPKEARIMYEKLQ  345 (436)
Q Consensus       278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S----~LGGeaqLwLAiAy-dA~GR~~EAiaLYkkL~  345 (436)
                      +..+.+|..|..+|++|+|-+|=+.||.+-..++.++    -+-|.+|+--|..+ -.-|...=|..|+++-.
T Consensus        15 ~t~~~a~~~Gi~lfN~g~y~eaHE~lEe~W~~~~~~~~er~~~QGLIQ~Aaa~~hh~~~gN~~GA~~l~~~al   87 (145)
T d2ijqa1          15 ETLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL   87 (145)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            5677899999999999999999999999987776544    36688887666553 68899999999998753