Citrus Sinensis ID: 013823

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430------
Protein Sequence
MFSLSEIPQTASTLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNLTLVFDEWSGMSRNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGEEVTDSFQNVQLQWKFVCKEPQNNHSGEKRYFELSFHKKHKQTVICYYLPHVVERAKEIKQEEKVVKLYNRECPYDDDDDGGGGGGMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEELMKADDADVALEGLVNFLKRKRIQADESKNNDVKGEEANEVEHEKAKQLKTG
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHHHHcccccccccHHHcccccccccEEEcccccEEEEccccEEEEEEEEEcccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccHHHHHHHHHHcccccccccccccccccccccccccEEEEccccccccccEEEEEccccccccccccccccccccEEEcccccHHHHHHHHHHHHcccccccccHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccHHHHHHHHHHHHHcccccHcEEEEEcccccccEEEEEccccEEEEEEccEEEEEEEEEEcccccccccEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEccccccccccccccccccEEEcccccccHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccEEEEccccccHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHccHHccccccEEEEEEcccHccccHHHcccccccEEEEEccccHHHHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mfslseipqtaSTLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYlfnplsnnltlvfdewsgmsrnqvFDAAELYLRTkinpdterlkvsktsrqKNFTVSIEKGEEVTDSFQNVQLQWKFVckepqnnhsgekryfeLSFHKKHKQTVICYYLPHVVERAKEIKQEEKVVKLYNrecpydddddggggggmwgsinlehpstfdtlamdpeLKQMILDDLDRFLRRKEFYRRVGKAWKRgyllygppgtgksSLIAAMANYLSVEMKdrqndgasvgsntKLTLSGILNFIDglwsscgderiIVFTTnhkeridpallrpgrmdvhinMSYCTVHGFKVLASnylgikgkshslFGEIEGliqstdvtpAEVAEELMKADDADVALEGLVNFLKRkriqadesknndvkgeeanEVEHEKAKQLKTG
Flexible Loop (DISEMBL)
mfslseipqtASTLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNLTLVFDEWSGMSRNQVFDAAELYLRtkinpdterlkvsktsrqknftvsiekgeevtdSFQNVQLQWKFVCKEPQNNHSGEKRYFELSFHKKHKQTVICYYLPHVVERAKEIKQEEKVVKLYNRECPYDDDDDGGGGGGMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVgkawkrgyllygppgtgkSSLIAAMANYLSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFttnhkeridpallrpgrmDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEELMKADDADVALEGLVNFLkrkriqadesknndvkgeeanevehekakqlktg
Low Complexity Region (SEG)
MFSLSEIPQTASTLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNLTLVFDEWSGMSRNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGEEVTDSFQNVQLQWKFVCKEPQNNHSGEKRYFELSFHKKHKQTVICYYLPHVVERAKEIKQEEKVVKLYNRECPYdddddggggggMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEELMKADDADVALEGLVNFLKRKRIQADESKNNDVKGEEANEVEHEKAKQLKTG
Disordered region (IsUnstruct)
************TLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNLTLVFDEWSGMSRNQVFDAAELYLRTKIN**************************VTDSFQNVQLQWKFVCKEP******EKRYFELSFHKKHKQTVICYYLPHVVERAKEIKQEEKVVKLYNR*****************************TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV**************NTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEELMKADDADVALEGLVNFLK*********************************
Disordered Region (DISOPRED)
*********T**TLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNLTLVFDEWSGMSRNQVFDAAELYLRTKINPDT*****************IEKGEEVTDSFQNVQLQWKFVCKEPQNNHSGEKRYFELSFHKKHKQTVICYYLPHVVERAKEIKQEEKVVKLYNRECPYDDDDDGGGGGGMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEELMKADDADVALEGLVN************************************
Disordered Region (DISEMBL)
MFSLSEIPQTASTLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNLTLVFDEWSGMSRNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGEEVTDSFQNVQLQWKFVCKEPQNNHSGEKRYFELSFHKKHKQTVICYYLPHVVERAKEIKQEEKVVKLYNRECPYDDDDDGGGGGGMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEELMKADDADVALEGLVNFLKRKRIQA***************************
Disordered Region (DISPRO)
MFSLSEIPQTASTLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNLTLVFDEWSGMSRNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGEEVTDSFQNVQLQWKFVCKEPQNNHSGEKRYFELSFHKKHKQTVICYYLPHVVERAKEIKQEEKVVKLYNRECPYDDDDDGGGGGGMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEELMKADDADVALEGLVNFLKRKRIQAD**************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFSLSEIPQTASTLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNLTLVFDEWSGMSRNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGEEVTDSFQNVQLQWKFVCKEPQNNHSGEKRYFELSFHKKHKQTVICYYLPHVVERAKEIKQEEKVVKLYNRECPYDDDDDGGGGGGMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEELMKADDADVALEGLVNFLKRKRIQADESKNNDVKGEEANEVEHEKAKQLKTG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	436	2.2.26 [Sep-21-2011]
Q9P6Q3	449	Probable mitochondrial ch	yes	no	0.401	0.389	0.312	1e-22
Q7ZV60	420	Mitochondrial chaperone B	yes	no	0.410	0.426	0.290	4e-18
Q7ZTL7	419	Mitochondrial chaperone B	N/A	no	0.295	0.307	0.329	6e-18
P32839	456	Mitochondrial chaperone B	yes	no	0.293	0.280	0.325	2e-17
Q9Y276	419	Mitochondrial chaperone B	yes	no	0.394	0.410	0.298	6e-17
Q9CZP5	418	Mitochondrial chaperone B	yes	no	0.392	0.409	0.301	7e-17
Q5E9H5	419	Mitochondrial chaperone B	yes	no	0.392	0.408	0.292	2e-16
Q54HY8	421	Probable mitochondrial ch	no	no	0.433	0.448	0.288	1e-15
Q5UR45	196	Putative AAA family ATPas	N/A	no	0.201	0.448	0.421	1e-11
Q7URM7	728	ATP-dependent zinc metall	yes	no	0.337	0.201	0.292	5e-10

>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1

 Score =  107 bits (268), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 52/227 (22%)

Query: 207 HPST---FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLI 263
           HP +     ++ ++  +K+MI DD+  FLR  ++Y   G  ++RGYLLYGPPG+GK+S +
Sbjct: 200 HPRSKRMLSSVVLESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFL 259

Query: 264 AAMANYLSVEM-----------KDRQN-----------------DGA--------SVGSN 287
            A+A  L  ++            DR N                 D A         VG +
Sbjct: 260 YALAGELDYDICVLNLAEKGLTDDRLNHLLSNVPPKAVVLLEDVDSAFQGRERSGEVGFH 319

Query: 288 TKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFK 347
             +T SG+LN +DG+ SS  DERII  TTNH E++DPAL+RPGR+DV   +   T    +
Sbjct: 320 ANVTFSGLLNALDGVTSS--DERIIFMTTNHPEKLDPALVRPGRVDVKAYLGNATPEQVR 377

Query: 348 VLASNYLG-----------IKGKSHSLFGEIEGLIQSTDVTPAEVAE 383
            + + + G           I    ++    ++GL      +PA+  +
Sbjct: 378 EMFTRFYGHSPEMADDLSDIVCPKNTSMASLQGLFVMNKSSPADAVD 424

Chaperone necessary for the assembly of mitochondrial respiratory chain complex III.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2

 Score = 92.8 bits (229), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 102/224 (45%), Gaps = 45/224 (20%)

Query: 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 270
             ++ ++  + + I+DD+  F+   ++Y   G  ++RGYLLYGPPG GKSS I A+A  L
Sbjct: 188 LSSVVLESGVAERIVDDVKEFIGNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247

Query: 271 SVEM-----------KDRQNDGASVGSNT------------------------------K 289
              +            DR N   SV                                  +
Sbjct: 248 GYSICLMSLSDRSLSDDRLNHLLSVAPQQSIILLEDVDAAFVSRELLPTENPLAYQGMGR 307

Query: 290 LTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVL 349
           LT SG+LN +DG+ SS  + RI+  TTN  ER+DPAL+RPGR+D+   + +C+      +
Sbjct: 308 LTFSGLLNALDGVASS--EARIVFMTTNFIERLDPALVRPGRVDLKQYVGHCSHWQLTQM 365

Query: 350 ASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEELM--KADDA 391
              +   +  + +     + L   TD++ A+V    M  K D A
Sbjct: 366 FRRFYPQESAAEADHFSEQALAAHTDLSAAQVQGHFMLYKTDPA 409

Chaperone necessary for the assembly of mitochondrial respiratory chain complex III.

Danio rerio (taxid: 7955)

>sp|Q7ZTL7|BCS1_XENLA Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1

 Score = 92.4 bits (228), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 88/173 (50%), Gaps = 44/173 (25%)

Query: 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMA--- 267
             ++ ++  + + I+ D+  F+   ++Y   G  ++RGYLLYGPPG GKSS I A+A   
Sbjct: 188 LSSVVLEQGISEKIVQDVKGFIENPKWYSDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247

Query: 268 --------------------NYLSVEMK------------------DRQNDGASVGSNTK 289
                               + LSV  +                  ++QN  A  G   +
Sbjct: 248 EYSICLMSLSDSSLSDDRLNHLLSVAPQQSIILLEDVDAAFVSRDLNKQNPTAYQGMG-R 306

Query: 290 LTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCT 342
           LT SG+LN +DG+ S+  + RI+  TTNH +R+DPAL+RPGR+DV   + +CT
Sbjct: 307 LTFSGLLNALDGVAST--EARIVFMTTNHIDRLDPALIRPGRVDVKQYVGHCT 357

Chaperone necessary for the assembly of mitochondrial respiratory chain complex III.

Xenopus laevis (taxid: 8355)

>sp|P32839|BCS1_YEAST Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2

 Score = 90.9 bits (224), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 38/166 (22%)

Query: 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMA----- 267
           ++ +D  +K+ ILDD+  F++  ++Y   G  ++RGYLLYGPPG+GK+S I A+A     
Sbjct: 227 SVILDSGIKEGILDDVYDFMKNGKWYSDRGIPYRRGYLLYGPPGSGKTSFIQALAGELDY 286

Query: 268 -----------------NYLSVEMKDR--------------QNDGASVGSNTKLTLSGIL 296
                            N+L   M +R              ++     G ++ +T SG+L
Sbjct: 287 NICILNLSENNLTDDRLNHLMNNMPERSILLLEDIDAAFNKRSQTGEQGFHSSVTFSGLL 346

Query: 297 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCT 342
           N +DG+ SS  +E I   TTNH E++D A++RPGR+D  + +   T
Sbjct: 347 NALDGVTSS--EETITFMTTNHPEKLDAAIMRPGRIDYKVFVGNAT 390

Essential for the expression of the Rieske iron-sulfur protein.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1

 Score = 89.4 bits (220), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 104/218 (47%), Gaps = 46/218 (21%)

Query: 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 270
            +++ +   L   I+ D+  F+   ++Y   G  ++RGYLLYGPPG GKSS I A+A  L
Sbjct: 188 LNSVVLQQGLADRIVRDVQEFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247

Query: 271 SVEM-----------KDRQNDGASVGSNT-----------------------------KL 290
              +            DR N   SV                                 +L
Sbjct: 248 EHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAVENPVKYQGLGRL 307

Query: 291 TLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLA 350
           T SG+LN +DG+ S+  + RI+  TTNH +R+DPAL+RPGR+D+   + YC+      + 
Sbjct: 308 TFSGLLNALDGVAST--EARIVFMTTNHVDRLDPALIRPGRVDLKEYVGYCSHWQLTQMF 365

Query: 351 SNYLGIKGKSHSLFGEI-EGLIQSTD-VTPAEVAEELM 386
             +    G++ SL     E ++++T+ ++PA+V    M
Sbjct: 366 QRF--YPGQAPSLAENFAEHVLRATNQISPAQVQGYFM 401

Chaperone necessary for the assembly of mitochondrial respiratory chain complex III. Plays an important role in the maintenance of mitochondrial tubular networks, respiratory chain assembly and formation of the LETM1 complex.

Homo sapiens (taxid: 9606)

>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1

 Score = 89.0 bits (219), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 48/219 (21%)

Query: 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 270
            D++ +   L   I+ D+  F+   ++Y   G  ++RGYLLYGPPG GKSS I A+A  L
Sbjct: 188 LDSVVLQQGLADRIVKDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247

Query: 271 SVEM-----------KDRQNDGASVGSNT-----------------------------KL 290
              +            DR N   SV                                 +L
Sbjct: 248 EHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAVENPIKYQGLGRL 307

Query: 291 TLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLA 350
           T SG+LN +DG+ S+  + RI+  TTN+ +R+DPAL+RPGR+D+   + YC+      + 
Sbjct: 308 TFSGLLNALDGVAST--EARIVFMTTNYIDRLDPALIRPGRVDLKEYVGYCSHWQLTQMF 365

Query: 351 SNYLGIKGKSHSL---FGEIEGLIQSTDVTPAEVAEELM 386
             +    G++ SL   F E   L  +++++PA+V    M
Sbjct: 366 QRFY--PGQAPSLAENFAE-HVLKATSEISPAQVQGYFM 401

Chaperone necessary for the assembly of mitochondrial respiratory chain complex III. Plays an important role in the maintenance of mitochondrial tubular networks, respiratory chain assembly and formation of the LETM1 complex.

Mus musculus (taxid: 10090)

>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 104/219 (47%), Gaps = 48/219 (21%)

Query: 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 270
            +++ ++  + + I+ D+  F+   ++Y   G  ++RGYLLYGPPG GKSS I A+A  L
Sbjct: 188 LNSVVLEQGVTERIVRDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247

Query: 271 SVEM-----------KDRQNDGASVGSNT-----------------------------KL 290
              +            DR N   SV                                 +L
Sbjct: 248 QHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAAENPIKYQGLGRL 307

Query: 291 TLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLA 350
           T SG+LN +DG+ S+  + RI+  TTNH +R+DPAL+RPGR+D+   + +C+      + 
Sbjct: 308 TFSGLLNALDGVAST--EARIVFMTTNHIDRLDPALIRPGRVDMKEYVGHCSRWQLTQMF 365

Query: 351 SNYLGIKGKSHSL---FGEIEGLIQSTDVTPAEVAEELM 386
             +    G++ SL   F +   L  +T ++PA+V    M
Sbjct: 366 QRFY--PGQATSLAENFAD-RVLQATTQISPAQVQGYFM 401

Chaperone necessary for the assembly of mitochondrial respiratory chain complex III. Plays an important role in the maintenance of mitochondrial tubular networks, respiratory chain assembly and formation of the LETM1 complex.

Bos taurus (taxid: 9913)

>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum GN=bcs1la PE=3 SV=1

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 57/246 (23%)

Query: 195 GGGGMWGSI-NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYG 253
           GG G W    N     +  ++ +  +LK  +++D+  F+  + +YR  G  ++RGYLLYG
Sbjct: 169 GGNGNWERFGNPRSIRSLSSVILADDLKSKLIEDIKSFITNESWYRNRGIPYRRGYLLYG 228

Query: 254 PPGTGKSSLIAAMANYLSV----------EMKDRQND-----------------GASVGS 286
            PG GKSSLI A+A  L++          ++ D+Q +                  A+  S
Sbjct: 229 EPGNGKSSLINAIAGELNLDICIVSLSSKDIDDKQINHLLNNAPPKSILLIEDIDAAFKS 288

Query: 287 N--------------TKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRM 332
           +                LT SG+LN +DG+ S  G  RI+  TTN  E +D AL+R GR+
Sbjct: 289 HRDNVDSNNNNSNNNNSLTYSGLLNALDGVASQEG--RILFMTTNKIELLDSALIREGRI 346

Query: 333 DVHINMSYCT--------VHGFKVLASNYLGIKGK----SHSL-FGEIEGLIQSTDVTPA 379
           D+ I +S  T         H + +   N L I+       H L   +I+G +     +P 
Sbjct: 347 DLKIKVSNATKSQAAQLFTHFYNLPTDNQLAIRFSENLHDHQLSMSQIQGFLLKYINSPE 406

Query: 380 EVAEEL 385
           +  EE+
Sbjct: 407 KAIEEV 412

Chaperone necessary for the assembly of mitochondrial respiratory chain complex III.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5UR45|YL572_MIMIV Putative AAA family ATPase L572 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L572 PE=3 SV=1

 Score = 71.2 bits (173), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 7/95 (7%)

Query: 288 TKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFK 347
           +KLTLSGILN +DG+++S G  RI++ TTNH E +DPAL+R GR+D+ I  S C  +   
Sbjct: 90  SKLTLSGILNSLDGIFNSEG--RIVIMTTNHSEVLDPALIRRGRIDMQIEFSNCDRYQIA 147

Query: 348 VLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVA 382
            +  N+ G    S     +I   I S   +PA V+
Sbjct: 148 KMYENFYGKNADS-----DILSKIPSDIYSPAHVS 177

Acanthamoeba polyphaga (taxid: 5757)

>sp|Q7URM7|FTSH2_RHOBA ATP-dependent zinc metalloprotease FtsH 2 OS=Rhodopirellula baltica (strain SH1) GN=ftsH2 PE=3 SV=1

 Score = 65.9 bits (159), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 48/195 (24%)

Query: 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMA 267
           P+TF+ +A   E    + + +D FL+  E Y+ +G    +G LL GPPGTGK+ L  A+A
Sbjct: 247 PTTFEDVAGIEEAVDEVREVVD-FLKNSEKYQSLGGRIPKGVLLVGPPGTGKTLLAKAIA 305

Query: 268 N-----YLSVEMKD-------------------------------------RQNDGASVG 285
                 + S+   D                                     +   G+ VG
Sbjct: 306 GEAGVPFFSLSGSDFVEMFVGVGAARVRDMFTQAVNRAPCIIFIDELDALGKSRSGSVVG 365

Query: 286 SNTKL--TLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTV 343
            + +   TL+ +L  +DG  S+ G   I+V  TN  E +DPALLRPGR D H+ +    V
Sbjct: 366 GHDEREQTLNALLVEMDGFDSNSG--VIVVAATNRPETLDPALLRPGRFDRHVLVDRPDV 423

Query: 344 HGF-KVLASNYLGIK 357
            G  ++LA +   +K
Sbjct: 424 AGREEILAVHVKNVK 438

Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins.

Rhodopirellula baltica (strain SH1) (taxid: 243090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	436
224094851	453	predicted protein [Populus trichocarpa]	0.944	0.909	0.665	1e-173
224094853	450	predicted protein [Populus trichocarpa]	0.933	0.904	0.616	1e-159
449520956	444	PREDICTED: katanin p60 ATPase-containing	0.903	0.887	0.559	1e-141
449464542	446	PREDICTED: katanin p60 ATPase-containing	0.892	0.872	0.552	1e-137
449520952	446	PREDICTED: LOW QUALITY PROTEIN: ATP-depe	0.899	0.878	0.555	1e-137
255561036	440	ATP binding protein, putative [Ricinus c	0.951	0.943	0.561	1e-137
224134228	452	predicted protein [Populus trichocarpa]	0.903	0.871	0.523	1e-136
357483569	606	Cell division protease ftsH-like protein	0.965	0.694	0.502	1e-136
356496709	504	PREDICTED: mitochondrial chaperone BCS1-	0.972	0.841	0.505	1e-136
356496717	503	PREDICTED: mitochondrial chaperone BCS1-	0.972	0.842	0.506	1e-135

>gi|224094851|ref|XP_002310264.1| predicted protein [Populus trichocarpa] gi|222853167|gb|EEE90714.1| predicted protein [Populus trichocarpa]

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 302/454 (66%), Positives = 361/454 (79%), Gaps = 42/454 (9%)

Query: 1   MFSLSEIPQTASTLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNL 60
           MFS + +PQ+ STLFSAY+  AGS+ML+RS ANELIP +LRSYL T    YLF PLS N+
Sbjct: 1   MFSPTNMPQSVSTLFSAYAAFAGSVMLIRSMANELIPYELRSYLSTAI-RYLFTPLSPNI 59

Query: 61  TLVFDEWSGMSRNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGEEVTDSFQ 120
           TLV DE  GMSRNQV+DAAE+YL+TKI+P TERLK+ KT RQ+ F+V+IEKGE VTD ++
Sbjct: 60  TLVIDEHCGMSRNQVYDAAEIYLKTKISPSTERLKIGKTPRQRTFSVAIEKGEVVTDVYE 119

Query: 121 NVQLQWKFVCKEPQNN-HSGEKRYFELSFHKKHKQTVICYYLPHVVERAKEIKQEEKVVK 179
           N++L+W FVC EPQNN HSGEK+ FELSF+KK+K+ V+  YLPHV++R KEIK EEKVVK
Sbjct: 120 NIKLKWAFVCTEPQNNSHSGEKKRFELSFNKKYKEKVMDRYLPHVLKRGKEIKDEEKVVK 179

Query: 180 LYNRECPYDDDDDGGGGGGMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYR 239
           LYNRECP++D+D GG  GGMWGSINLEHPSTFDTLA+DPELK+MI+DDL RFL RK+FY+
Sbjct: 180 LYNRECPFNDED-GGDHGGMWGSINLEHPSTFDTLALDPELKKMIVDDLKRFLGRKDFYK 238

Query: 240 RVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------------------------- 270
           +VGKAWKRGYLLYGPPGTGKSSLIAAMANYL                             
Sbjct: 239 KVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDLELTSIYSNSDLRRVLLSTTNRS 298

Query: 271 ---------SVEMKDRQN-DGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 320
                    ++EM+DRQ  +    GSN++LTLSG+LNFIDGLWSSCGDERIIVFTTNHK+
Sbjct: 299 ILVIEDIDCNMEMRDRQQGEDQYDGSNSRLTLSGLLNFIDGLWSSCGDERIIVFTTNHKD 358

Query: 321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAE 380
           R+D ALLRPGRMDVHINMSYCT   F +LASNYLGI+ K+H L+ EIEGL++ST+VTPAE
Sbjct: 359 RLDSALLRPGRMDVHINMSYCTPQAFSILASNYLGIRDKNHYLYDEIEGLMESTNVTPAE 418

Query: 381 VAEELMKADDADVALEGLVNFLKRKRIQADESKN 414
           VAEELM +++ADVALEGLVNFLKRK  +A+E K+
Sbjct: 419 VAEELMASENADVALEGLVNFLKRKYSEANEVKS 452

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094853|ref|XP_002310265.1| predicted protein [Populus trichocarpa] gi|222853168|gb|EEE90715.1| predicted protein [Populus trichocarpa]

 Score =  567 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 289/469 (61%), Positives = 347/469 (73%), Gaps = 62/469 (13%)

Query: 1   MFSLSEIPQTASTLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNL 60
           MFS + +P++ STLFSAY++ AGS+ML+RS   ELIP +LRSYL T    YLF PLS N+
Sbjct: 1   MFSPTNMPRSVSTLFSAYASFAGSIMLIRSMEKELIPDELRSYLSTAI-PYLFTPLSPNI 59

Query: 61  TLVFDEWSGMSRNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGEEVTDSFQ 120
           TLV DE  G+SRNQV+DAAE+YL+TKI+P TERLK+ KT RQ+ F+V+IEKGE VTD ++
Sbjct: 60  TLVIDEHFGVSRNQVYDAAEIYLKTKISPSTERLKIGKTPRQRTFSVAIEKGEVVTDVYE 119

Query: 121 NVQLQWKFVCKEPQNN-HSGEKRYFELSFHKKHKQTVICYYLPHVVERAKEIKQEEKVVK 179
           N+ L+W +VC E QN+ +S EKR FELSF+KK+K+ V+  YLPHV++R KEI+ EEKVVK
Sbjct: 120 NIMLKWAYVCTEQQNDGYSEEKRSFELSFNKKYKEKVMDCYLPHVLKRGKEIEDEEKVVK 179

Query: 180 LYNRECPYDDDDDGGGGGGMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYR 239
           LYNR+                GSINLEHPSTFDTLA+DPELK+MI+DDL RFL RKEFY+
Sbjct: 180 LYNRQ----------------GSINLEHPSTFDTLALDPELKKMIVDDLKRFLGRKEFYK 223

Query: 240 RVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------------------------- 270
           +VGKAWKRGYLLYGPPGTGKSSLIAAMANYL                             
Sbjct: 224 KVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDLELTSLSSNSDLRRVLLSTTSRS 283

Query: 271 ---------SVEMKDRQNDGASV-GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 320
                    SV+ +DRQ  G    GSN+ LTLSG+LNFIDGLWSSCGDERIIVFTTNHK+
Sbjct: 284 ILVIEDIDCSVQTRDRQQGGDQYDGSNSTLTLSGLLNFIDGLWSSCGDERIIVFTTNHKD 343

Query: 321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAE 380
           R+DPALLRPGRMDVHINM YCT   F +LASNYL I+ K+H L+ EIEGL++ST+VTPAE
Sbjct: 344 RLDPALLRPGRMDVHINMPYCTPQAFSILASNYLDIRDKNHYLYDEIEGLMESTNVTPAE 403

Query: 381 VAEELMKADDADVALEGLVNFLKRKRIQADESKNNDVKGEEANEVEHEK 429
           VAEELM +++ADVALEGLVNFLKRK  +A     N+VK EE  +VE  K
Sbjct: 404 VAEELMASENADVALEGLVNFLKRKHSEA-----NEVKSEENGKVEEAK 447

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520956|ref|XP_004167498.1| PREDICTED: katanin p60 ATPase-containing subunit A1-like, partial [Cucumis sativus]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 246/440 (55%), Positives = 316/440 (71%), Gaps = 46/440 (10%)

Query: 7   IPQTASTLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNLTLVFDE 66
           +PQ+ S LFSAY++ A +MML+RS  NEL+P +L S+  + F  Y F  +S+   LV +E
Sbjct: 8   VPQSVSALFSAYASFATTMMLIRSLTNELLPAKLISFFSSIFV-YFFGSISSQTKLVIEE 66

Query: 67  WSGMSRNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGEEVTDSFQNVQLQW 126
            SG + N+VF AAE YLRTKI+P  + LKV+KT RQK  T+SI+K +E+ D F+N++LQW
Sbjct: 67  NSGFAMNEVFQAAEFYLRTKISPSIDTLKVTKTPRQKKVTLSIDKDQEIIDYFENIRLQW 126

Query: 127 KFVCKEPQNNHSG--EKRYFELSFHKKHKQTVICYYLPHVVERAKEIKQEEKVVKLYNRE 184
           +F+C   + N  G  EKR FELSF KK +  ++ +YLP+V+ RAKEIK+E KVVK++++E
Sbjct: 127 RFLCSVDERNGGGSREKRQFELSFPKKFRDRIVDFYLPYVLRRAKEIKEENKVVKIFSQE 186

Query: 185 CPYDDDDDGGGGGGMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA 244
           C YDDD      GG WGS+NLEHP+TFDTLAMDPELKQ I++DLDRF+RRK+FY++VGKA
Sbjct: 187 CQYDDD-----SGGNWGSVNLEHPATFDTLAMDPELKQSIIEDLDRFVRRKDFYKKVGKA 241

Query: 245 WKRGYLLYGPPGTGKSSLIAAMANYL---------------------------------- 270
           WKRGYLLYGPPGTGKSSLIAAMANYL                                  
Sbjct: 242 WKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDLDLTNMYSNSDLRRVLLATTNRSILVIE 301

Query: 271 ----SVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPAL 326
               SV++++RQ++     S++K TLSG+LNFIDGLWSSCGDERII+FTTN+K R+DPAL
Sbjct: 302 DIDCSVQIQNRQSEEHFDQSSSKFTLSGMLNFIDGLWSSCGDERIIIFTTNNKHRLDPAL 361

Query: 327 LRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEELM 386
           LR GRMD+HINMSYC+  G +VL SNYLG +   HS +GEIE LI   +V PAE+AEELM
Sbjct: 362 LRAGRMDMHINMSYCSREGLRVLVSNYLGGEATKHSTYGEIEELIGEMEVAPAEIAEELM 421

Query: 387 KADDADVALEGLVNFLKRKR 406
           K ++ +  L GLV+FLKRKR
Sbjct: 422 KGEETEAVLGGLVDFLKRKR 441

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464542|ref|XP_004149988.1| PREDICTED: katanin p60 ATPase-containing subunit A1-like, partial [Cucumis sativus]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 241/436 (55%), Positives = 312/436 (71%), Gaps = 47/436 (10%)

Query: 7   IPQTASTLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNLTLVFDE 66
           +PQ+ S LFSAY++ A +MML+RS  NEL+P +L S+  ++ + Y F  +S+   LV +E
Sbjct: 8   VPQSVSALFSAYASFATTMMLIRSLTNELLPAKLISF--SSIFVYFFGSISSQTKLVIEE 65

Query: 67  WSGMSRNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGEEVTDSFQNVQLQW 126
            SG + N+VF AAE YLRTKI+P  + LKV+KT RQK  T+SI+K +E+ D F+N++LQW
Sbjct: 66  NSGFAMNEVFQAAEFYLRTKISPSIDTLKVTKTPRQKKVTLSIDKDQEIIDYFENIRLQW 125

Query: 127 KFVCKEPQNNHSG--EKRYFELSFHKKHKQTVICYYLPHVVERAKEIKQEEKVVKLYNRE 184
           +F+C   + N  G  EKR FELSF KK +  ++ +YLP+V+ RAKEIK+E KVVK++++E
Sbjct: 126 RFLCSVDERNGGGSREKRQFELSFPKKFRDRIVDFYLPYVLRRAKEIKEENKVVKIFSQE 185

Query: 185 CPYDDDDDGGGGGGMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA 244
           C YDDD      GG WGS+NLEHP+TFDTLAMDPELKQ I++DLDRF+RRK+FY++VGKA
Sbjct: 186 CQYDDD-----SGGNWGSVNLEHPATFDTLAMDPELKQSIIEDLDRFVRRKDFYKKVGKA 240

Query: 245 WKRGYLLYGPPGTGKSSLIAAMANYL---------------------------------- 270
           WKRGYLLYGPPGTGKSSLIAAMANYL                                  
Sbjct: 241 WKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDLDLTNMYSNSDLRRVLLATTNRSILVIE 300

Query: 271 ----SVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPAL 326
               SV++++RQ++     S++K TLSG+LNFIDGLWSSCGDERII+FTTN+K R+DPAL
Sbjct: 301 DIDCSVQIQNRQSEEHFDQSSSKFTLSGMLNFIDGLWSSCGDERIIIFTTNNKHRLDPAL 360

Query: 327 LRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEELM 386
           LR GRMD+HINMSYC+  G +VL SNYLG +   HS +GEIE LI   +V PAE+AEELM
Sbjct: 361 LRAGRMDMHINMSYCSREGLRVLVSNYLGGEATKHSTYGEIEELIGEMEVAPAEIAEELM 420

Query: 387 KADDADVALEGLVNFL 402
           K ++ +  L GLV FL
Sbjct: 421 KGEETEAVLGGLVGFL 436

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520952|ref|XP_004167496.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent zinc metalloprotease FtsH-like, partial [Cucumis sativus]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 241/434 (55%), Positives = 314/434 (72%), Gaps = 42/434 (9%)

Query: 7   IPQTASTLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNLTLVFDE 66
           +PQ+ ST+FSAY++ A +MML+RS ANEL+P +  S L +T Y Y F  LS+    V DE
Sbjct: 3   VPQSVSTVFSAYASFATTMMLIRSLANELLPAKFISLLSST-YVYFFGSLSSQTKFVIDE 61

Query: 67  WSGMSRNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGEEVTDSFQNVQLQW 126
            SG+S N+VF AA++YLRT I+P T+ LKV KT+RQ+N T+SI K +E+TD FQN++LQW
Sbjct: 62  SSGLSPNEVFQAADIYLRTIISPSTDILKVHKTARQQNITLSIYKDQEITDYFQNIRLQW 121

Query: 127 KFVCKEPQNNHSGEKRYFELSFHKKHKQTVICYYLPHVVERAKEIKQEEKVVKLYNRECP 186
           + VC    ++ + EKR+FELSF KK ++ V+ +YLP+V++ AKE++++ KVVK++++EC 
Sbjct: 122 QLVCSIDSHDTTTEKRHFELSFPKKFRERVVDFYLPYVLKTAKEVEEKNKVVKIFSQEC- 180

Query: 187 YDDDDDGGGGGGMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWK 246
             +D D   G   WGS+NL+HPSTFDTLA+DPELKQ I+DDLDRF+RR++FYR+VGKAWK
Sbjct: 181 --NDYDDYAGAATWGSVNLDHPSTFDTLAVDPELKQWIIDDLDRFVRRRDFYRKVGKAWK 238

Query: 247 RGYLLYGPPGTGKSSLIAAMANYL------------------------------------ 270
           RGYLLYGPPGTGKSSLIAAMANYL                                    
Sbjct: 239 RGYLLYGPPGTGKSSLIAAMANYLKFNIYDLDLTTIYSNSDLRRNLLATRNRSILVIEDI 298

Query: 271 --SVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLR 328
             SVE+++R +     G N K TLSG+LNFIDGLWSS GDERII+FTTNHKE++DPALLR
Sbjct: 299 DCSVEIQNRDSGEEYGGYNNKFTLSGMLNFIDGLWSSVGDERIIIFTTNHKEKLDPALLR 358

Query: 329 PGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEELMKA 388
           PGRMDVHI+MSYC+  G KVLASNYLG +   H ++ EIE LI   +V+PAE+AEELMK 
Sbjct: 359 PGRMDVHIHMSYCSRKGLKVLASNYLGEEATEHDVYREIEELIGDMEVSPAEIAEELMKG 418

Query: 389 DDADVALEGLVNFL 402
           ++ +  L GL+NFL
Sbjct: 419 EETEAVLGGLLNFL 432

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561036|ref|XP_002521530.1| ATP binding protein, putative [Ricinus communis] gi|223539208|gb|EEF40801.1| ATP binding protein, putative [Ricinus communis]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 250/445 (56%), Positives = 318/445 (71%), Gaps = 30/445 (6%)

Query: 1   MFSLSEIPQTASTLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNL 60
           M S+S++PQ ASTLFS Y++ A  +ML+RS AN+LIP  L+SY+ + F     +  S+  
Sbjct: 2   MPSVSQMPQIASTLFSTYASFAAFLMLVRSLANDLIPHHLQSYINSFFCRLFTHASSSTF 61

Query: 61  TLVFDEWSGMSRNQVFDAAELYLRTKI-NPDTERLKVSKTSRQKNFTVSIEKGEEVTDSF 119
           TL  DE  G S+NQ+++AAE+YLRTK  N     LKVSK+ RQ+  T SI  GEE+ D +
Sbjct: 62  TLTIDELFGYSQNQIYEAAEIYLRTKTANSSARHLKVSKSQRQRKITTSIVSGEEIIDYY 121

Query: 120 QNVQLQWKFVCKEPQNNHSGEKRYFELSFHKKHKQTVICYYLPHVVERAKEIKQEEKVVK 179
            +++L+W++ C E Q     EKRYFELSF+   K  V+  YLP+V+++A   KQE+KVVK
Sbjct: 122 DDMKLKWRYACDESQTP-PNEKRYFELSFNMNFKDKVLSSYLPYVLQKADASKQEDKVVK 180

Query: 180 LYNRECPYDDDDDGGGGGGMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYR 239
           LYNRECPYDD+D  G GGGMWGSINLEHPSTF TLAMDPE+K+M++DDLDRFL+RKEFY+
Sbjct: 181 LYNRECPYDDED--GSGGGMWGSINLEHPSTFQTLAMDPEVKKMVVDDLDRFLQRKEFYK 238

Query: 240 RVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASVGSNTKL-------TL 292
           +VG+AWKRGYLLYGPPGTGKSSLIAAMANYL   + D   D ASV SN++L       T 
Sbjct: 239 KVGRAWKRGYLLYGPPGTGKSSLIAAMANYLRFNIYDL--DLASVSSNSELKRILLSTTN 296

Query: 293 SGIL---------------NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHIN 337
             IL               N  D    S     + VFTTNHK+R+DPALLRPGRMD+HI+
Sbjct: 297 RSILVIEDIDCNKEARDRQNIADEYDPSISKMTLSVFTTNHKDRLDPALLRPGRMDMHIH 356

Query: 338 MSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEELMKADDADVALEG 397
           MSYC+ +GFK LASNYLG+    H LFGEIE LI+S++++PA+VAEELMK DDADVALEG
Sbjct: 357 MSYCSPYGFKTLASNYLGV--SDHPLFGEIEALIESSEISPAQVAEELMKNDDADVALEG 414

Query: 398 LVNFLKRKRIQADESKNNDVKGEEA 422
           L+ F+KRK+++  E K+   K  +A
Sbjct: 415 LIQFIKRKKMEGTEIKDEKTKLVDA 439

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134228|ref|XP_002327787.1| predicted protein [Populus trichocarpa] gi|222836872|gb|EEE75265.1| predicted protein [Populus trichocarpa]

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 241/460 (52%), Positives = 334/460 (72%), Gaps = 66/460 (14%)

Query: 10  TASTLFSAYSTLAGSMMLLRSFANEL---IPQQLRSYLCTTFYHYLFNPLSNNLTLVFDE 66
           ++S+  +AY+++AGS+M+ +S AN+L   IP  +RSYL +T   Y F P S  LTLV DE
Sbjct: 1   SSSSFLAAYASMAGSIMMAQSIANQLSHLIPHHVRSYLSSTL-RYFFKPQSPILTLVIDE 59

Query: 67  WSGMSRNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGEEVTDSFQNVQLQW 126
            +G++RNQV+DA+E YL TK++P+T+RLK+SKT  +KN T+ +EKGE++ D+++ V+LQW
Sbjct: 60  STGIARNQVYDASETYLCTKVSPNTKRLKISKTPTEKNLTIKLEKGEKIVDNYEGVELQW 119

Query: 127 KFVCKEPQNNHSG--------EKRYFELSFHKKHKQTVICYYLPHVVERAKEIKQEEKVV 178
           + V  E + N S         EKR+FELSFH+ HK+T++  Y+P+++ERAK IK+E +V+
Sbjct: 120 RLVFAEAEKNDSHNPFQPRNVEKRWFELSFHRDHKETILGSYIPYILERAKSIKEEVRVL 179

Query: 179 KLYNRECPYDDDDDGGGGGGMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFY 238
           K++        ++  G GG  W SINLEHP+TF+TLAM+P+LK ++++DL+RF++RK+FY
Sbjct: 180 KMHTL------NNSQGYGGIKWESINLEHPATFETLAMEPDLKNIVIEDLNRFVKRKDFY 233

Query: 239 RRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---------------------------- 270
           +RVG+AWKRGYLLYGPPGTGKSSL+AAMAN+L                            
Sbjct: 234 KRVGRAWKRGYLLYGPPGTGKSSLVAAMANHLKFDVYDLQLANIMRDSDLRRLFLATGNR 293

Query: 271 ----------SVEMKDRQN-----DGASVG----SNTKLTLSGILNFIDGLWSSCGDERI 311
                     S+++ DR+      DG        +N  LTLSG+LNFIDGLWSSCGDERI
Sbjct: 294 SILVIEDIDCSLDLPDRRQVSKDGDGRKQHDVQVTNAALTLSGLLNFIDGLWSSCGDERI 353

Query: 312 IVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLI 371
           I+FTTNH++R+DPALLRPGRMD+HI+MSYCT HGF+VLASNYLGI G  H+LFGEIE LI
Sbjct: 354 IIFTTNHRDRLDPALLRPGRMDMHIHMSYCTTHGFRVLASNYLGING-YHTLFGEIEDLI 412

Query: 372 QSTDVTPAEVAEELMKADDADVALEGLVNFLKRKRIQADE 411
           ++T+VTPA+VAEELMK++D+++ALEG+V  LKRK+++ DE
Sbjct: 413 KTTEVTPAQVAEELMKSEDSNIALEGVVKLLKRKKLEGDE 452

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483569|ref|XP_003612071.1| Cell division protease ftsH-like protein [Medicago truncatula] gi|355513406|gb|AES95029.1| Cell division protease ftsH-like protein [Medicago truncatula]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 245/488 (50%), Positives = 329/488 (67%), Gaps = 67/488 (13%)

Query: 1   MFSLSEIPQTASTLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNL 60
           MFS  E+P + ST+FSAY+++  S+MLLRS A ELIPQ +R YL  TF  YL  P S  L
Sbjct: 23  MFSQREMP-SPSTIFSAYASMTASIMLLRSMAQELIPQPIRGYLYNTF-RYLIKPRSPTL 80

Query: 61  TLVFDEWSGMSRNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGEEVTDSFQ 120
           TL+ +E +G++RNQV+DAAE YL TK+ P+ ERLK+SK  ++K  T+ +EKGE++TD + 
Sbjct: 81  TLIIEESTGITRNQVYDAAESYLSTKVTPENERLKISKVPKEKKLTIRLEKGEKLTDIYN 140

Query: 121 NVQLQWKFVCKEPQNNHS-------------GEKRYFELSFHKKHKQTVICYYLPHVVER 167
              L+W+F+C E + N +              EK+YFELSFHKK+K+ V+  YLP ++++
Sbjct: 141 GFPLKWRFICAETEKNSANDMHNNNNSVSVRSEKKYFELSFHKKYKEVVLDSYLPFILDK 200

Query: 168 AKEIKQEEKVVKLYNRECPYDDDDDGGGGGGMWGSINLEHPSTFDTLAMDPELKQMILDD 227
           AKE+K EE+V+K++     Y         G  W SINLEHPSTF+TLAM+P++K +I++D
Sbjct: 201 AKEMKDEERVLKMHTLNTAY------CYSGVKWDSINLEHPSTFETLAMEPDMKNVIIED 254

Query: 228 LDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD----------- 276
           L+ F++R+EFY++VG+AWKRGYLLYGPPGTGKSSLIAAMANYL  ++ D           
Sbjct: 255 LNMFVKRREFYKKVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIFDLQLGNIVRDSD 314

Query: 277 ----------------------------RQNDGASVGSNTKLTLSGILNFIDGLWSSCGD 308
                                       R  +G    ++ +LTLSG+LNFIDGLWSSCGD
Sbjct: 315 LRKLLLATANRSILVIEDIDCSIDIPERRHGEGRKQQNDIQLTLSGLLNFIDGLWSSCGD 374

Query: 309 ERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIE 368
           ERII+FTTNHKER+DPALLRPGRMD+HI+MSYC+  GFK+LASNYL I    +  FGEIE
Sbjct: 375 ERIIIFTTNHKERLDPALLRPGRMDMHIHMSYCSYEGFKILASNYLDI-SHDNPFFGEIE 433

Query: 369 GLIQSTDVTPAEVAEELMKADDADVALEGLVNFLKRKRIQADESKNNDVKGEEANEVEHE 428
           GLI+   +TPA+VAEELMK +DA+  LEG V  LKRK+++ D  +NN+      N++E +
Sbjct: 434 GLIEDIQITPAQVAEELMKNEDAEATLEGFVKLLKRKKMEGDVCENNN------NKIEQQ 487

Query: 429 KAKQLKTG 436
             K+   G
Sbjct: 488 SKKRKVVG 495

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496709|ref|XP_003517208.1| PREDICTED: mitochondrial chaperone BCS1-like isoform 1 [Glycine max]

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 246/487 (50%), Positives = 329/487 (67%), Gaps = 63/487 (12%)

Query: 1   MFSLSEIPQTASTLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNL 60
           MFS  ++P + S++FSAY+++  S+MLLRS AN+L+PQ +R YL +TF  YL  P S  L
Sbjct: 1   MFSPRDMP-SPSSIFSAYASMTASIMLLRSMANDLVPQPIRGYLYSTF-RYLIKPRSPTL 58

Query: 61  TLVFDEWSGMSRNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGEEVTDSFQ 120
           TL+ +E +G++RNQV+DAAE YL T+++P+ ERLK+SK++++K  TV +EKGE+V D F 
Sbjct: 59  TLIIEESTGIARNQVYDAAEAYLSTRVSPENERLKISKSAKEKKLTVRLEKGEKVVDCFD 118

Query: 121 NVQLQWKFVCKEPQNNHS------------GEKRYFELSFHKKHKQTVICYYLPHVVERA 168
               +W+F+C E + N+              EKR FELSF KK+K+ V+  YLP ++E+A
Sbjct: 119 GACFKWRFICAESEKNNPNDHSNNNSISVRSEKRSFELSFPKKYKEMVLDSYLPFILEKA 178

Query: 169 KEIKQEEKVVKLYNRECPYDDDDDGGGGGGMWGSINLEHPSTFDTLAMDPELKQMILDDL 228
           KE+K EE+V+K++     Y         G  W SINLEHPSTF+TLAM+PELK  +++DL
Sbjct: 179 KEMKDEERVLKMHTLNTSY------CYSGVKWDSINLEHPSTFETLAMEPELKNAVIEDL 232

Query: 229 DRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD------------ 276
           DRF++RKEFY+RVG+AWKRGYLLYGPPGTGKSSLIAAMANYL  ++ D            
Sbjct: 233 DRFVKRKEFYKRVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIFDLQLGNIVRDSDL 292

Query: 277 ---------------------------RQNDGASVGSNTKLTLSGILNFIDGLWSSCGDE 309
                                      R  D     ++ +LTLSG+LNFIDGLWSSCGDE
Sbjct: 293 RKLLLATANRSILVIEDIDCSVDLPERRHGDHGRKQTDVQLTLSGLLNFIDGLWSSCGDE 352

Query: 310 RIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEG 369
           RII+FTTNHKER+DPALLRPGRMD+HI+MSYC+  GFK+LASNYL      H LFGE+EG
Sbjct: 353 RIIIFTTNHKERLDPALLRPGRMDMHIHMSYCSYQGFKILASNYLETPS-DHPLFGEVEG 411

Query: 370 LIQSTDVTPAEVAEELMKADDADVALEGLVNFLKRKRIQADESKNNDVKGEEANEVEHEK 429
           LI+   +TPA+VAEELMK +D +  LEG V  LKRK+++ D  +N+     +  E  H++
Sbjct: 412 LIEDIQITPAQVAEELMKNEDPEATLEGFVKLLKRKKMEGDVCENST---PDKAEPTHQQ 468

Query: 430 AKQLKTG 436
           +K+ K G
Sbjct: 469 SKRRKVG 475

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496717|ref|XP_003517212.1| PREDICTED: mitochondrial chaperone BCS1-like isoform 5 [Glycine max]

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 246/486 (50%), Positives = 331/486 (68%), Gaps = 62/486 (12%)

Query: 1   MFSLSEIPQTASTLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNL 60
           MFS  ++P + S++FSAY+++  S+MLLRS AN+L+PQ +R YL +TF  YL  P S  L
Sbjct: 1   MFSPRDMP-SPSSIFSAYASMTASIMLLRSMANDLVPQPIRGYLYSTF-RYLIKPRSPTL 58

Query: 61  TLVFDEWSGMSRNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGEEVTDSFQ 120
           TL+ +E +G++RNQV+DAAE YL T+++P+ ERLK+SK++++K  TV +EKGE+V D F 
Sbjct: 59  TLIIEESTGIARNQVYDAAEAYLSTRVSPENERLKISKSAKEKKLTVRLEKGEKVVDCFD 118

Query: 121 NVQLQWKFVCKEPQNNHS------------GEKRYFELSFHKKHKQTVICYYLPHVVERA 168
               +W+F+C E + N+              EKR FELSF KK+K+ V+  YLP ++E+A
Sbjct: 119 GACFKWRFICAESEKNNPNDHSNNNSISVRSEKRSFELSFPKKYKEMVLDSYLPFILEKA 178

Query: 169 KEIKQEEKVVKLYNRECPYDDDDDGGGGGGMWGSINLEHPSTFDTLAMDPELKQMILDDL 228
           KE+K EE+V+K++     Y         G  W SINLEHPSTF+TLAM+PELK  +++DL
Sbjct: 179 KEMKDEERVLKMHTLNTSY------CYSGVKWDSINLEHPSTFETLAMEPELKNAVIEDL 232

Query: 229 DRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL------------------ 270
           DRF++RKEFY+RVG+AWKRGYLLYGPPGTGKSSLIAAMANYL                  
Sbjct: 233 DRFVKRKEFYKRVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIFDLQLGNIVRDSDL 292

Query: 271 --------------------SVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDER 310
                               SV++ +R++   +     +LTLSG+LNFIDGLWSSCGDER
Sbjct: 293 RKLLLATANRSILVIEDIDCSVDLPERRHANRASDGWMQLTLSGLLNFIDGLWSSCGDER 352

Query: 311 IIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGL 370
           II+FTTNHKER+DPALLRPGRMD+HI+MSYC+  GFK+LASNYL      H LFGE+EGL
Sbjct: 353 IIIFTTNHKERLDPALLRPGRMDMHIHMSYCSYQGFKILASNYLETPS-DHPLFGEVEGL 411

Query: 371 IQSTDVTPAEVAEELMKADDADVALEGLVNFLKRKRIQADESKNNDVKGEEANEVEHEKA 430
           I+   +TPA+VAEELMK +D +  LEG V  LKRK+++ D  +N+     +  E  H+++
Sbjct: 412 IEDIQITPAQVAEELMKNEDPEATLEGFVKLLKRKKMEGDVCENST---PDKAEPTHQQS 468

Query: 431 KQLKTG 436
           K+ K G
Sbjct: 469 KRRKVG 474

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	436
TAIR|locus:2053109	494	AT2G18190 [Arabidopsis thalian	0.651	0.574	0.537	3.9e-125
TAIR|locus:2175986	505	AT5G17760 [Arabidopsis thalian	0.605	0.522	0.431	5.7e-107
TAIR|locus:2077997	576	BCS1 "cytochrome BC1 synthesis	0.628	0.475	0.417	1.7e-105
TAIR|locus:2078007	451	AT3G50940 [Arabidopsis thalian	0.614	0.594	0.448	1.5e-104
TAIR|locus:2175946	470	AT5G17730 [Arabidopsis thalian	0.651	0.604	0.411	8.4e-102
TAIR|locus:2175956	533	AT5G17740 [Arabidopsis thalian	0.607	0.497	0.391	9.8e-97
TAIR|locus:2098648	510	AT3G28540 [Arabidopsis thalian	0.628	0.537	0.366	9.3e-84
TAIR|locus:2098658	530	AT3G28510 [Arabidopsis thalian	0.607	0.5	0.354	1.4e-80
TAIR|locus:2037186	475	AT1G43910 [Arabidopsis thalian	0.596	0.547	0.342	2.8e-80
TAIR|locus:1005716649	495	AT2G18193 [Arabidopsis thalian	0.621	0.547	0.550	6.2e-78

TAIR|locus:2053109 AT2G18190 [Arabidopsis thaliana (taxid:3702)]

 Score = 774 (277.5 bits), Expect = 3.9e-125, Sum P(2) = 3.9e-125
 Identities = 157/292 (53%), Positives = 209/292 (71%)

Query:     1 MF-SLSEIPQTASTLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNN 59
             MF S+S I  + S+LF+AY++L G +ML RS  N+ +P++LRSY+ T   +  F P S N
Sbjct:     1 MFPSISNISLSPSSLFTAYASLTGFLMLFRSLFNDEVPERLRSYI-TDLLNRFFTPKSKN 59

Query:    60 LTLVFDEWSGMSRNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGEEVTDSF 119
             LT+V DE  G  RNQVFDAAE+YLR KI P+T RL+V K  +QK+FT+ IEKGEE+ D+F
Sbjct:    60 LTMVIDEIIGFKRNQVFDAAEVYLRNKIGPETARLRVGKLPKQKHFTIYIEKGEEILDTF 119

Query:   120 QNVQLQWKFVCKEPQNNHSG-EKRYFELSFHKKHKQTVICYYLPHVVERAKEIKQEEKVV 178
             +N +L+W +V  E +N  S  EKRY+EL+F KK +  V+  YL HVV  ++E K++ + V
Sbjct:   120 ENSELRWTYV--ESENEASQKEKRYYELTFEKKLRDKVMNSYLSHVVAESEETKRDLRAV 177

Query:   179 KLYNRECPYXXXXXXXXXXXMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFY 238
             KLY+R+               WG INLEHPSTF+TLAMDP  K+ I+DD++RFL+R+EFY
Sbjct:   178 KLYSRDVRASKDDDGMAGAG-WGCINLEHPSTFETLAMDPGAKKKIIDDMERFLKRREFY 236

Query:   239 RRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASVGSNTKL 290
             +RVGKAWKRGYLLYGPPGTGKSSLIAAMANYL  ++ D +   +S+  N +L
Sbjct:   237 KRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVFDLEL--SSIYENAQL 286

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

TAIR|locus:2175986 AT5G17760 [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 5.7e-107, Sum P(2) = 5.7e-107
 Identities = 129/299 (43%), Positives = 190/299 (63%)

Query:     1 MFSLSEIPQTASTLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNL 60
             MF   ++P   S +F+AY+++AG MM++RS A+ELIP  L+ ++  T     F   S+ L
Sbjct:     1 MFFSKDLPSPTS-VFTAYASMAGYMMMIRSMAHELIPAPLQDFIYRTLRSLFFRSSSSTL 59

Query:    61 TLVFDEWS-GMSRNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGEEVTDSF 119
             TL  D+ + GM+ N+++ AA+ YL TKI+PD  RL++SK  + K+  + +  GE V D +
Sbjct:    60 TLTIDDDNMGMN-NEIYRAAQTYLSTKISPDAVRLRISKGHKDKHVNLYLSDGEIVNDVY 118

Query:   120 QNVQLQWKFVC--------------------KEPQNNHSGEKRYFELSFHKKHKQTVICY 159
             ++VQL W+FV                     +    +  G+  YFELSF KKHK  ++  
Sbjct:   119 EDVQLVWRFVTDGGDKKGGGGGVGGRGGGGGRRGGMDDDGKSEYFELSFDKKHKDLILNS 178

Query:   160 YLPHVVERAKEIKQEEKVVKLYNRECPYXXXXXXXXXXXMWGSINLEHPSTFDTLAMDPE 219
             Y+P++  +AKEI+ E +++ L++                 W S+ LEHPSTF+T+AM+ +
Sbjct:   179 YVPYIESKAKEIRDERRILMLHSLN------------SLRWESVILEHPSTFETMAMEDD 226

Query:   220 LKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ 278
             LK+ +++DLDRF+RRKEFY+RVGKAWKRGYLLYGPPGTGKSSL+AAMANYL  ++ D Q
Sbjct:   227 LKRDVIEDLDRFIRRKEFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVYDLQ 285

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2077997 BCS1 "cytochrome BC1 synthesis" [Arabidopsis thaliana (taxid:3702)]

 Score = 620 (223.3 bits), Expect = 1.7e-105, Sum P(2) = 1.7e-105
 Identities = 122/292 (41%), Positives = 189/292 (64%)

Query:    10 TASTLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNLTLVFDEWSG 69
             TA T+ +  +++A + ML RS   + +P ++  Y+   F   +F   S+ +T++ +E+ G
Sbjct:    57 TAKTVLTTAASVAATAMLARSLVQDYLPDEVHHYISYGF-RSIFGYFSSQMTIIIEEFEG 115

Query:    70 MSRNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGEEVTDSFQNVQLQWKFV 129
              + N+VF+AAE YL TKI+P  +R+KVSK  ++ N+ V++E+ EEV D++  V+ QW   
Sbjct:   116 FAHNEVFEAAEAYLATKISPSNKRIKVSKHEKENNYNVTVERDEEVVDTYNGVKFQWILH 175

Query:   130 CKEPQNNH-----------SGEKRYFELSFHKKHKQTVICYYLPHVVERAKEIKQEEKVV 178
             C+  ++ H             E R FEL+FHKK K   +  YLP +V+RA  +KQE+K +
Sbjct:   176 CRHVESKHFHNPRDLNSTLRSEVRSFELNFHKKFKDVALESYLPFMVKRATLMKQEKKTL 235

Query:   179 KLYNRECPYXXXXXXXXXXXMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFY 238
             K++    P             W S+ L+HPSTF TLAMD ++K  +++DLD+F++R++FY
Sbjct:   236 KIFTLS-PENMYGNYSDA---WTSVTLDHPSTFKTLAMDSDVKTSVMEDLDKFVKRRDFY 291

Query:   239 RRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASVGSNTKL 290
             +RVGKAWKRGYLLYGPPGTGKSSLIAAMAN+L+ ++ D +    +V +N++L
Sbjct:   292 KRVGKAWKRGYLLYGPPGTGKSSLIAAMANHLNFDIYDLEL--TAVNNNSEL 341

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2078007 AT3G50940 [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 1.5e-104, Sum P(2) = 1.5e-104
 Identities = 131/292 (44%), Positives = 188/292 (64%)

Query:    10 TASTLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNLTLVFDEWSG 69
             TA T  +A +++A + +L RS   + +P ++  Y+   F  + F+  S  +T V +E+ G
Sbjct:    11 TAKTALTAVASVAAAAILARSVVQDYMPNEVHEYISHGFRRF-FSYFSYQMTAVIEEFGG 69

Query:    70 MSRNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGEEVTDSFQNVQLQWKFV 129
                NQVF+AAE YL TKI+  T R+KV+K  +Q N++V++E+ EEV D F  V+L W  V
Sbjct:    70 FEHNQVFEAAEAYLSTKISNSTRRIKVNKLEKQSNYSVTVERDEEVVDIFDGVKLSWILV 129

Query:   130 CKE--------PQNNHS---GEKRYFELSFHKKHKQTVICYYLPHVVERAKEIKQEEKVV 178
             C+         P++ +S    E R +ELSF KK K  V+  YLP VVE+A  IKQ+ K +
Sbjct:   130 CRHVDKKDFRNPRDLNSTLKSEVRSYELSFRKKFKNMVLESYLPFVVEQAASIKQKFKTL 189

Query:   179 KLYNRECPYXXXXXXXXXXXMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFY 238
             K++  +  Y            W S+ L+HPSTF TLA+DPE+K+ +++DLDRF++RK FY
Sbjct:   190 KIFTVDS-YSVE---------WTSVTLDHPSTFRTLALDPEVKKNLVEDLDRFVQRKGFY 239

Query:   239 RRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASVGSNTKL 290
              RVGKAWKRGYLLYGPPGTGKSSLIAA+AN+L+ ++ D   D  S+ +N +L
Sbjct:   240 GRVGKAWKRGYLLYGPPGTGKSSLIAAIANHLNFDIYDL--DLTSLNNNAEL 289

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

TAIR|locus:2175946 AT5G17730 [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 8.4e-102, Sum P(2) = 8.4e-102
 Identities = 127/309 (41%), Positives = 194/309 (62%)

Query:     1 MFSLSEIPQTASTLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNL 60
             MFSL  +P  A  + SAY++L G +M+++ F    IP  L++Y+ +    +L +  S  L
Sbjct:     1 MFSLRNLPSLAPFV-SAYASLTGYVMMIKPFLEMTIPPPLQNYMISYLNSFLHSTPST-L 58

Query:    61 TLVFDEW--SGMSRNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGEEVTDS 118
             TL+ D+   +GM  N+++ AA++Y+ TK+N + ERL++S+   +KN  +    GE V+D 
Sbjct:    59 TLIIDDHIKNGMY-NELYGAAQVYISTKVNHNAERLRISRDRSEKNVNIHFSVGEVVSDI 117

Query:   119 FQNVQLQWKFVCKEPQNN---HSGE-------KRYFELSFHKKHKQTVICYYLPHVVERA 168
             +Q ++++W+F     ++N   + GE       +   ELSF KKH + V+  Y+P+V  +A
Sbjct:   118 YQGIEVKWRFCVDSNKSNMVHYFGEHFKLNPDRECVELSFEKKHTELVLNSYIPYVESKA 177

Query:   169 KEIKQEEKVVKLYNRECPYXXXXXXXXXXXMWGSINLEHPSTFDTLAMDPELKQMILDDL 228
             K I  E K++K+Y+  C Y            W S+NLEHPSTFDT+AM+ ELK+ ++ DL
Sbjct:   178 KVINNERKILKMYSYCCMYLK----------WQSVNLEHPSTFDTMAMNEELKRSVMGDL 227

Query:   229 DRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASVGSNT 288
             DRF+RRK+FY+RVGK WKRGYLLYGPPGTGK+SL+AA+ANYL  ++ D Q       ++ 
Sbjct:   228 DRFIRRKDFYKRVGKPWKRGYLLYGPPGTGKTSLVAAIANYLKFDIYDLQLASVREDADL 287

Query:   289 KLTLSGILN 297
             +  L G  N
Sbjct:   288 RRLLLGTTN 296

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

TAIR|locus:2175956 AT5G17740 [Arabidopsis thaliana (taxid:3702)]

 Score = 553 (199.7 bits), Expect = 9.8e-97, Sum P(2) = 9.8e-97
 Identities = 113/289 (39%), Positives = 187/289 (64%)

Query:     1 MFSLSEIPQTASTLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNL 60
             +FS  +IP  AS +FS Y+++ G +M+++   N +IP+ +++++ +    +     S+ L
Sbjct:     2 VFS-RDIPSPAS-MFSTYASMMGYVMIIKPMINTIIPRPVQNFVFSYLKSFA-GSRSSTL 58

Query:    61 TLVFDEWSGMS-RNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGEEVTDSF 119
             TL  D+ S M   ++++ AA+ YL TKI+P++ RL +++   +K   + +  GE V+D +
Sbjct:    59 TLTIDQMSSMYIPDELYAAAQAYLSTKISPNSVRLIMARDPAEKKVKLYLSDGEVVSDVY 118

Query:   120 QNVQLQWKFVCKEPQN--------NHSG--EKRYFELSFHKKHKQTVICYYLPHVVERAK 169
               ++L+W+F+ +   N        ++ G  ++   ELSF KKH+  V+  Y+P+V  +AK
Sbjct:   119 NGIKLKWRFLARNKNNTMVEEYGQSYQGNIQRESLELSFDKKHRDLVVNSYIPYVESKAK 178

Query:   170 EIKQEEKVVKLYNRECPYXXXXXXXXXXXMWGSINLEHPSTFDTLAMDPELKQMILDDLD 229
             E+  + +++K++   C Y            W S+N +HPSTFDT+AM+ +LK+ +++DLD
Sbjct:   179 EVNNKRRILKMH---C-YSHMAQT------WQSVNFKHPSTFDTMAMNDDLKRSMIEDLD 228

Query:   230 RFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ 278
             RF+ RK+FY+RVGKAWKRGYLLYGPPGTGKSSL+AAMANYL  ++ D Q
Sbjct:   229 RFVGRKDFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMANYLKFDIYDLQ 277

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

TAIR|locus:2098648 AT3G28540 [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 9.3e-84, Sum P(2) = 9.3e-84
 Identities = 104/284 (36%), Positives = 161/284 (56%)

Query:    11 ASTLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNLTLVFDEWS-- 68
             A  LF    T   S+M   S   + +P Q+R YL   FY  +F  +SN++ + F E++  
Sbjct:     4 AGGLFGFTGTTMASLMFFWSVYRQFVPYQIRDYLEKCFYK-MFGLVSNSVHIKFTEYTED 62

Query:    69 -GMSRNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGEEVTDSFQNVQLQWK 127
              G+ ++Q +D    YL +K     +RLK +++   K+  +S++  E V D FQ V++ W 
Sbjct:    63 KGLKKSQAYDLIRNYLSSKSTARAQRLKANESKNSKSLVLSLDNHEAVEDVFQGVKVVWS 122

Query:   128 F-VCKEPQNNHSGEKRYFELSFHKKHKQTVICYYLPHVVERAKEIKQEEKVVKLYNRECP 186
               V K      S EKRY  LSFH ++++ +   YL HV+   KEI  + +  KLY     
Sbjct:   123 LSVWKSNDQADSSEKRYLTLSFHNRYREMITTTYLDHVLREGKEIGLKNRERKLYTNN-- 180

Query:   187 YXXXXXXXXXXXMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWK 246
                          W ++  +HP+TF+TLAMD E K+ +  DL +F + K++YR+VGK WK
Sbjct:   181 -SSQDYSAWREGRWSNVPFDHPATFETLAMDLEKKEGMKKDLIKFTKGKDYYRKVGKPWK 239

Query:   247 RGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASVGSNTKL 290
             RGYLL+GPPGTGKS++I+AMAN+L  ++ D +    +V  N++L
Sbjct:   240 RGYLLFGPPGTGKSTMISAMANFLEYDVYDLEL--TTVKDNSEL 281

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

TAIR|locus:2098658 AT3G28510 [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
 Identities = 99/279 (35%), Positives = 161/279 (57%)

Query:    20 TLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNLTLVFDEWS--GMSRNQVFD 77
             T   S M   +   + +P   R+Y+   ++H +   +S  + + F E++  G+ R+Q +D
Sbjct:    13 TTVTSFMFFWAIYKQYVPAHFRAYV-ERYFHKMIGWISYYVDIKFTEYTDEGLKRSQAYD 71

Query:    78 AAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGEEVTDSFQNVQLQWKFVCK--EPQN 135
             +   YL +K     +RLK ++T   K+   S++  EE+ D F+ V+++W    K  +PQ+
Sbjct:    72 SIRNYLASKSTALAKRLKANETKNSKSLVFSMDDHEEIEDEFEGVKVKWYSNVKVIQPQS 131

Query:   136 NH----SGEKRYFELSFHKKHKQTVICYYLPHVVERAKEIKQEEKVVKLYNRECPYXXXX 191
             N+    S E+R+F LSFH++H+  +I  YL HV+   K I    +  KLY          
Sbjct:   132 NYGQRSSEERRHFTLSFHRRHRGMIIETYLDHVLREGKAIGLMNRERKLYTNN---SSQE 188

Query:   192 XXXXXXXMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLL 251
                     W ++   HP+TF+TLAMDPE K+ I  DL +F + K++Y++VGK WKRGYLL
Sbjct:   189 WYPWRSGKWSNVPFHHPATFETLAMDPEKKEGIKKDLIKFSKGKDYYKKVGKPWKRGYLL 248

Query:   252 YGPPGTGKSSLIAAMANYLSVEMKDRQNDGASVGSNTKL 290
             +GPPGTGKS++IAA+AN+L  ++ D +    +V  N++L
Sbjct:   249 FGPPGTGKSTMIAAIANFLDYDVYDLEL--TTVKDNSEL 285

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2037186 AT1G43910 [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 2.8e-80, Sum P(2) = 2.8e-80
 Identities = 96/280 (34%), Positives = 163/280 (58%)

Query:     5 SEIPQTASTLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNLTLVF 64
             S++P + S +FS Y++ +   ML R+  NE++P+++R Y+      +  +   ++ T V 
Sbjct:     6 SQVP-SVSAVFSLYTSFSAITMLFRTILNEIVPKRIREYIAMKAVDFFSSYFQSDFTFVI 64

Query:    65 DE-WSGMSRNQVFDAAELYLRTKI-NPDTERLKVSKTSRQKNFTVSIEKG----EEVTDS 118
             ++ W  +  NQ F AAE+YL T +    T +L V  +S  KN     + G     ++ D+
Sbjct:    65 EQRWEFVE-NQTFRAAEVYLPTCLAGLSTGKLLVG-SSNLKNPAAEPKLGIPVNTKIIDN 122

Query:   119 FQNVQLQWKFVCKEPQNNHSGEKRYFELSFHKKHKQTVICYYLPHVVERAKEIKQEEKVV 178
             F+ + L+W     E +  +  EKRYF L+  K+ ++ ++  Y  ++ + A++I    + +
Sbjct:   123 FEGIHLEWTLHSVETKK-YLPEKRYFHLTCKKEFREKIMTDYFTYLAKSAEKIMSHRENL 181

Query:   179 KLYNRECPYXXXXXXXXXXXMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFY 238
             K+Y     Y            W S   EH +TF+TLA++P+LK+ ++DDLD F + K+F+
Sbjct:   182 KIYT----YNQDRSK------WESAIFEHHTTFETLAVEPDLKKTLIDDLDAFSKGKDFF 231

Query:   239 RRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ 278
             + VG+AWKRGYLLYGPPGTGKSS++AA+AN++   + D Q
Sbjct:   232 KSVGRAWKRGYLLYGPPGTGKSSMVAAIANHMKYHIYDLQ 271

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:1005716649 AT2G18193 [Arabidopsis thaliana (taxid:3702)]

 Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
 Identities = 153/278 (55%), Positives = 203/278 (73%)

Query:     1 MFSLSEIPQTASTLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNL 60
             MF  S+   + S+LFSAY++L G +ML RS  ++ +P++LRSY  +    + F P S  L
Sbjct:     1 MFPSSDFSFSPSSLFSAYASLTGFLMLFRSMLHDFVPEKLRSYFSSLLDRF-FTPKSKYL 59

Query:    61 TLVFDEWSGMSRNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGEEVTDSFQ 120
             T++ DE  G++RNQVFDAAE+YLR+KI P+TERL+V K  +QK+FT+SIE+GEE+ D+F+
Sbjct:    60 TVIIDENFGLNRNQVFDAAEMYLRSKIGPETERLRVGKIPKQKHFTISIERGEEILDTFE 119

Query:   121 NVQLQWKFVCKEPQNNHSGEK--RYFELSFHKKHKQTVICYYLPHVVERAKEIKQEEKVV 178
               +++W +V  E   N  G+K  RY+EL+F KK +  V+  YL HVV  ++EIK+  +VV
Sbjct:   120 ESEVKWSYVQSE---NEKGDKVKRYYELTFEKKLRDKVLNSYLTHVVAESEEIKRNLRVV 176

Query:   179 KLYNRECPYXXXXXXXXXXXMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFY 238
             KLY+R+  Y            WG INLEHPSTFDTLAMDP  K+ I+DDL+RFL+RKEFY
Sbjct:   177 KLYSRDV-YASDDDDGMAGGNWGCINLEHPSTFDTLAMDPNAKKKIIDDLERFLKRKEFY 235

Query:   239 RRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD 276
             +RVGKAWKRGYLLYGPPGTGKSSLIAAMANYL  ++ D
Sbjct:   236 KRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVFD 273

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VII.3677.1 hypothetical protein (453 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	436
pfam14363	100	pfam14363, AAA_assoc, Domain associated at C-termi	2e-35
pfam00004	131	pfam00004, AAA, ATPase family associated with vari	9e-13
COG0464	494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	2e-12
CHL00176	638	CHL00176, ftsH, cell division protein; Validated	3e-11
TIGR01241	495	TIGR01241, FtsH_fam, ATP-dependent metalloprotease	7e-10
COG1222	406	COG1222, RPT1, ATP-dependent 26S proteasome regula	3e-09
PTZ00361	438	PTZ00361, PTZ00361, 26 proteosome regulatory subun	5e-09
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	9e-09
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	8e-08
COG0465	596	COG0465, HflB, ATP-dependent Zn proteases [Posttra	1e-07
PTZ00454	398	PTZ00454, PTZ00454, 26S protease regulatory subuni	3e-07
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	1e-06
TIGR01242	364	TIGR01242, 26Sp45, 26S proteasome subunit P45 fami	1e-06
PRK10733	644	PRK10733, hflB, ATP-dependent metalloprotease; Rev	2e-06
PRK08116	268	PRK08116, PRK08116, hypothetical protein; Validate	3e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	1e-04
TIGR03689	512	TIGR03689, pup_AAA, proteasome ATPase	1e-04
smart00382	148	smart00382, AAA, ATPases associated with a variety	5e-04
TIGR03689	512	TIGR03689, pup_AAA, proteasome ATPase	6e-04
PRK03992	389	PRK03992, PRK03992, proteasome-activating nucleoti	7e-04
COG1484	254	COG1484, DnaC, DNA replication protein [DNA replic	0.001
PRK08939	306	PRK08939, PRK08939, primosomal protein DnaI; Revie	0.001
pfam13191	154	pfam13191, AAA_16, AAA ATPase domain	0.003
COG2255	332	COG2255, RuvB, Holliday junction resolvasome, heli	0.004

>gnl|CDD|222710 pfam14363, AAA_assoc, Domain associated at C-terminal with AAA

 Score =  126 bits (318), Expect = 2e-35
 Identities = 46/100 (46%), Positives = 62/100 (62%), Gaps = 2/100 (2%)

Query: 35  LIPQQLRSYLCTTFYHYLFNPLSNNLTLVFDEWSGMSRNQVFDAAELYLRTKINPDTERL 94
           L+P +LR YL +       +  S  LT+V DE+ G SRNQ++DAAE YL TKI+P   RL
Sbjct: 1   LLPHELREYLSSLLRRLFGSRFSPYLTIVIDEYDGFSRNQLYDAAEAYLSTKISPSARRL 60

Query: 95  KVSKTSRQKN--FTVSIEKGEEVTDSFQNVQLQWKFVCKE 132
           K SK  + KN    +S++ GEEVTD F+ V++ W  V  E
Sbjct: 61  KASKAKKSKNSSLVLSLDDGEEVTDVFEGVKVWWTSVVTE 100

This domain is found in association with the AAA family, pfam00004. Length = 100

>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA)

 Score = 64.5 bits (158), Expect = 9e-13
 Identities = 35/136 (25%), Positives = 47/136 (34%), Gaps = 49/136 (36%)

Query: 249 YLLYGPPGTGKSSLIAAMANYLSVEM---------------------------------- 274
            LLYGPPGTGK++L  A+A  L                                      
Sbjct: 1   LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV 60

Query: 275 ----------KDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP 324
                       R + G S        L   L  +DG  +S   + I++  TN  +++DP
Sbjct: 61  IFIDEIDALAGSRGSGGDSESRRVVNQL---LTELDGF-TSSLSKVIVIAATNRPDKLDP 116

Query: 325 ALLRPGRMDVHINMSY 340
           ALLR GR D  I    
Sbjct: 117 ALLR-GRFDRIIEFPL 131

AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131

>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

 Score = 68.3 bits (167), Expect = 2e-12
 Identities = 46/172 (26%), Positives = 66/172 (38%), Gaps = 51/172 (29%)

Query: 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 269
           T D +    E K+ + + ++  L+R E +R++G    +G LLYGPPGTGK+ L  A+A  
Sbjct: 240 TLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALE 299

Query: 270 L------------------------------------SVEMKD--------RQNDGASVG 285
                                                S+   D        R       G
Sbjct: 300 SRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSG 359

Query: 286 SNTKLTLSGILNFIDGLWSSCGDERIIVF-TTNHKERIDPALLRPGRMDVHI 336
                 L   L  +DG+      E ++V   TN  + +DPALLRPGR D  I
Sbjct: 360 RRVVGQL---LTELDGI---EKAEGVLVIAATNRPDDLDPALLRPGRFDRLI 405

Length = 494

>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 52/174 (29%), Positives = 76/174 (43%), Gaps = 47/174 (27%)

Query: 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN- 268
           TF  +A   E K+   +++  FL++ E +  VG    +G LL GPPGTGK+ L  A+A  
Sbjct: 181 TFRDIAGIEEAKEE-FEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE 239

Query: 269 ----YLS------VEM--------------KDRQND----------------GASVGSNT 288
               + S      VEM              K ++N                 GA +G   
Sbjct: 240 AEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGN 299

Query: 289 K---LTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMS 339
                TL+ +L  +DG   + G   I++  TN  + +D ALLRPGR D  I +S
Sbjct: 300 DEREQTLNQLLTEMDGFKGNKG--VIVIAATNRVDILDAALLRPGRFDRQITVS 351

Length = 638

>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH

 Score = 60.4 bits (147), Expect = 7e-10
 Identities = 56/199 (28%), Positives = 88/199 (44%), Gaps = 55/199 (27%)

Query: 193 GGGGGGMWG-------SINLEHPS-TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA 244
            GGGG  +         +N E P  TF  +A   E K+ +++ +D FL+    + ++G  
Sbjct: 28  QGGGGRAFSFGKSKAKLLNEEKPKVTFKDVAGIDEAKEELMEIVD-FLKNPSKFTKLGAK 86

Query: 245 WKRGYLLYGPPGTGKSSLIAAMAN-----YLS------VEM--------------KDRQN 279
             +G LL GPPGTGK+ L  A+A      + S      VEM              + ++N
Sbjct: 87  IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKN 146

Query: 280 D----------------GASVGSNT---KLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 320
                            GA +G      + TL+ +L  +DG  ++ G   I++  TN  +
Sbjct: 147 APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG--VIVIAATNRPD 204

Query: 321 RIDPALLRPGRMDVHINMS 339
            +DPALLRPGR D  + + 
Sbjct: 205 VLDPALLRPGRFDRQVVVD 223

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495

>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 58.4 bits (142), Expect = 3e-09
 Identities = 42/149 (28%), Positives = 60/149 (40%), Gaps = 46/149 (30%)

Query: 232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV------------------- 272
           L+  E +  +G    +G LLYGPPGTGK+ L  A+AN                       
Sbjct: 171 LKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGA 230

Query: 273 -------EMKD------------------RQNDGASVGSNTKLTLSGILNFIDGLWSSCG 307
                  E+                    R + G S     + T+  +LN +DG +   G
Sbjct: 231 RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG-FDPRG 289

Query: 308 DERIIVFTTNHKERIDPALLRPGRMDVHI 336
           + ++I   TN  + +DPALLRPGR D  I
Sbjct: 290 NVKVI-MATNRPDILDPALLRPGRFDRKI 317

Length = 406

>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional

 Score = 57.9 bits (140), Expect = 5e-09
 Identities = 46/149 (30%), Positives = 66/149 (44%), Gaps = 46/149 (30%)

Query: 232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLSV-------------- 272
           L   E Y  +G    +G +LYGPPGTGK+ L  A+AN     +L V              
Sbjct: 203 LTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGP 262

Query: 273 ----EMKDRQNDGA----------SVGSNTKLTLSG-----------ILNFIDGLWSSCG 307
               E+     + A          ++G+      SG           +LN +DG + S G
Sbjct: 263 KLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDG-FDSRG 321

Query: 308 DERIIVFTTNHKERIDPALLRPGRMDVHI 336
           D ++I+  TN  E +DPAL+RPGR+D  I
Sbjct: 322 DVKVIM-ATNRIESLDPALIRPGRIDRKI 349

Length = 438

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score = 57.2 bits (138), Expect = 9e-09
 Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 44/157 (28%)

Query: 219 ELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAM-----ANYLSVE 273
           E+KQ + + ++  L+  E + ++G    +G LL+GPPGTGK+ L  A+     AN+++V 
Sbjct: 460 EVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVR 519

Query: 274 --------------------MKDRQN----------------DGASVGSN-TKLTLSGIL 296
                                K RQ                  GA   ++ T   ++ +L
Sbjct: 520 GPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLL 579

Query: 297 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMD 333
             +DG+        +++  TN  + +DPALLRPGR D
Sbjct: 580 TEMDGIQELSN--VVVIAATNRPDILDPALLRPGRFD 614

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score = 54.1 bits (130), Expect = 8e-08
 Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 45/160 (28%)

Query: 219 ELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLSVE 273
           E K+ I + ++  ++  E +  +G    +G LLYGPPGTGK+ L  A+AN     ++S+ 
Sbjct: 185 EAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISIN 244

Query: 274 -------------------MKDRQNDGAS-----------------VGSNTKLTLSGILN 297
                               K+ + +  S                  G   K  ++ +L 
Sbjct: 245 GPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLT 304

Query: 298 FIDGLWSSCGDERIIVF-TTNHKERIDPALLRPGRMDVHI 336
            +DGL    G  R+IV   TN  + +DPAL RPGR D  I
Sbjct: 305 LMDGLK---GRGRVIVIGATNRPDALDPALRRPGRFDREI 341

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 49/173 (28%)

Query: 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 268
            TF  +A   E K+ + + +D FL+  + Y+ +G    +G LL GPPGTGK+ L  A+A 
Sbjct: 147 VTFADVAGVDEAKEELSELVD-FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAG 205

Query: 269 -------YLS----VEM--------------KDRQN----------------DGASVGSN 287
                   +S    VEM              + ++N                 GA +G  
Sbjct: 206 EAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGG 265

Query: 288 T---KLTLSGILNFIDGLWSSCGDERIIVFT-TNHKERIDPALLRPGRMDVHI 336
               + TL+ +L  +DG     G+E +IV   TN  + +DPALLRPGR D  I
Sbjct: 266 NDEREQTLNQLLVEMDG---FGGNEGVIVIAATNRPDVLDPALLRPGRFDRQI 315

Length = 596

>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 46/160 (28%)

Query: 221 KQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE------- 273
           KQ I + ++  L   E Y ++G    RG LLYGPPGTGK+ L  A+A++ +         
Sbjct: 154 KQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGS 213

Query: 274 -------------MKD-----RQND-----------------GASVGSNTKL--TLSGIL 296
                        ++D     R+N                   A  G++ ++   L  +L
Sbjct: 214 EFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELL 273

Query: 297 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHI 336
           N +DG   +   + I+   TN  + +DPALLRPGR+D  I
Sbjct: 274 NQMDGFDQTTNVKVIM--ATNRADTLDPALLRPGRLDRKI 311

Length = 398

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 25/133 (18%), Positives = 44/133 (33%), Gaps = 38/133 (28%)

Query: 246 KRGYLLYGPPGTGKSSLIAAMANYLSV---------------EMKDRQNDGAS------- 283
            +  LLYGPPGTGK++L  A+AN L                  +   +  G         
Sbjct: 19  PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFE 78

Query: 284 --------------VGSNTKLTLSGILNFIDGL--WSSCGDERIIVFTTNHKERIDPALL 327
                         + S ++   + +L  ++ L       +   ++  TN     D    
Sbjct: 79  LAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRA 138

Query: 328 RPGRMDVHINMSY 340
              R+D+ I +  
Sbjct: 139 LYDRLDIRIVIPL 151

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 43/146 (29%), Positives = 61/146 (41%), Gaps = 46/146 (31%)

Query: 232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----------------YL---- 270
           L+  E +  VG    +G LLYGPPGTGK+ L  A+A+                 Y+    
Sbjct: 142 LKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGA 201

Query: 271 ---------------SVEMKD--------RQNDGASVGSNTKLTLSGILNFIDGLWSSCG 307
                          S+   D        R + G S     + TL  +L  +DG +   G
Sbjct: 202 RLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG-FDPRG 260

Query: 308 DERIIVFTTNHKERIDPALLRPGRMD 333
           + ++I   TN  + +DPALLRPGR D
Sbjct: 261 NVKVIA-ATNRPDILDPALLRPGRFD 285

Many proteins may score above the trusted cutoff because an internal. Length = 364

>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 53/182 (29%), Positives = 77/182 (42%), Gaps = 49/182 (26%)

Query: 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 268
           +TF  +A   E K+ +  +L  +LR    ++++G    +G L+ GPPGTGK+ L  A+A 
Sbjct: 149 TTFADVAGCDEAKEEV-AELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 207

Query: 269 YLSV-----------EM-----KDRQND-------------------------GASVG-- 285
              V           EM       R  D                         GA +G  
Sbjct: 208 EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG 267

Query: 286 -SNTKLTLSGILNFIDGLWSSCGDERIIVFT-TNHKERIDPALLRPGRMDVHINMSYCTV 343
               + TL+ +L  +DG     G+E IIV   TN  + +DPALLRPGR D  + +    V
Sbjct: 268 HDEREQTLNQMLVEMDGFE---GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 324

Query: 344 HG 345
            G
Sbjct: 325 RG 326

Length = 644

>gnl|CDD|236153 PRK08116, PRK08116, hypothetical protein; Validated

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 21/104 (20%)

Query: 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKR---GYLLYGPPGTGKSSLIAA 265
           STF+    D   ++          +    Y +  +  K+   G LL+G  GTGK+ L A 
Sbjct: 82  STFENFLFDKGSEKAY--------KIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133

Query: 266 MANYLSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDE 309
           +AN L       +     +  N       +LN I   + S G E
Sbjct: 134 IANELI------EKGVPVIFVNF----PQLLNRIKSTYKSSGKE 167

Length = 268

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 5/37 (13%)

Query: 243 KAWKRGY-----LLYGPPGTGKSSLIAAMANYLSVEM 274
           ++W +G      LLYGPPG GK+SL  A+AN    E+
Sbjct: 31  ESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEV 67

Length = 482

>gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 3/57 (5%)

Query: 281 GASVGSNTKLTL-SGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHI 336
           G+ V S+ + T+   +L  IDG+ S   D  I++  +N ++ IDPA+LRPGR+DV I
Sbjct: 306 GSGVSSDVETTVVPQLLAEIDGVESL--DNVIVIGASNREDMIDPAILRPGRLDVKI 360

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 512

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMKD 276
               L+ GPPG+GK++L  A+A  L      
Sbjct: 2   GEVILIVGPPGSGKTTLARALARELGPPGGG 32

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 216 MDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIA-AMANYL 270
           +  +++Q I D ++      E YR  G    +G LLYGPPG GK +LIA A+AN L
Sbjct: 187 LGSQIEQ-IRDAVELPFLHPELYREYGLKPPKGVLLYGPPGCGK-TLIAKAVANSL 240

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 512

>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional

 Score = 41.4 bits (98), Expect = 7e-04
 Identities = 18/37 (48%), Positives = 25/37 (67%)

Query: 232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 268
           L++ E +  VG    +G LLYGPPGTGK+ L  A+A+
Sbjct: 151 LKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 187

Length = 389

>gnl|CDD|224401 COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 202 SINLEHPSTFDT--LAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGK 259
           S +     TF+       P + +  L+DL      + F R          +L GPPG GK
Sbjct: 67  SASFPAKKTFEEFDFEFQPGIDKKALEDLASL--VEFFERG------ENLVLLGPPGVGK 118

Query: 260 SSLIAAMANYLS 271
           + L  A+ N L 
Sbjct: 119 THLAIAIGNELL 130

Length = 254

>gnl|CDD|236353 PRK08939, PRK08939, primosomal protein DnaI; Reviewed

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 219 ELKQMILDDLDRFLRRKEFYRRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYLS 271
            L  + LDD DR          +         +G  LYG  G GKS L+AA+AN L+
Sbjct: 125 SLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA 181

Length = 306

>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 235 KEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV 272
            +  RR         LL GP GTGK+SL+  +   L V
Sbjct: 13  LDALRRARSGGPPSVLLTGPSGTGKTSLLRELLEGLLV 50

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 154

>gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

 Score = 38.7 bits (91), Expect = 0.004
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 18/68 (26%)

Query: 226 DDLDRFLRRKEFYRRVGK-------------AWKRG-----YLLYGPPGTGKSSLIAAMA 267
             ++R LR K     +G+             A KRG      LL+GPPG GK++L   +A
Sbjct: 14  MKIERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIA 73

Query: 268 NYLSVEMK 275
           N L V +K
Sbjct: 74  NELGVNLK 81

Length = 332

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	436
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	100.0
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	100.0
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	100.0
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	99.97
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	99.97
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	99.97
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	99.96
KOG0726	440	consensus 26S proteasome regulatory complex, ATPas	99.96
PF14363	98	AAA_assoc: Domain associated at C-terminal with AA	99.95
KOG0652	424	consensus 26S proteasome regulatory complex, ATPas	99.95
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	99.95
KOG0736	953	consensus Peroxisome assembly factor 2 containing	99.95
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	99.95
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	99.95
KOG0728	404	consensus 26S proteasome regulatory complex, ATPas	99.95
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	99.95
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.94
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	99.94
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	99.93
PRK03992	389	proteasome-activating nucleotidase; Provisional	99.93
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.93
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.93
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	99.93
CHL00195	489	ycf46 Ycf46; Provisional	99.92
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	99.92
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.91
CHL00176	638	ftsH cell division protein; Validated	99.91
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	99.91
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.9
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	99.9
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	99.89
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.87
KOG0732	1080	consensus AAA+-type ATPase containing the bromodom	99.87
CHL00206	2281	ycf2 Ycf2; Provisional	99.85
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	99.85
KOG0740	428	consensus AAA+-type ATPase [Posttranslational modi	99.85
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	99.84
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.84
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	99.81
KOG0742	630	consensus AAA+-type ATPase [Posttranslational modi	99.7
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	99.64
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.52
CHL00181	287	cbbX CbbX; Provisional	99.48
PF00004	132	AAA: ATPase family associated with various cellula	99.45
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.44
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	99.44
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.42
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	99.42
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	99.4
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	99.38
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	99.37
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	99.34
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	99.33
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	99.31
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	99.31
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	99.3
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	99.29
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	99.28
PRK04195	482	replication factor C large subunit; Provisional	99.28
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	99.28
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	99.27
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	99.24
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	99.24
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	99.24
PHA02544	316	44 clamp loader, small subunit; Provisional	99.23
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.22
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	99.21
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	99.21
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	99.21
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	99.21
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	99.2
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	99.2
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	99.2
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	99.2
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	99.19
PLN03025	319	replication factor C subunit; Provisional	99.18
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	99.17
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	99.17
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	99.17
PRK07940	394	DNA polymerase III subunit delta'; Validated	99.17
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	99.16
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	99.16
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	99.15
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	99.13
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	99.13
PRK13342	413	recombination factor protein RarA; Reviewed	99.12
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	99.12
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	99.12
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	99.11
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	99.09
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	99.07
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	99.07
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	99.06
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	99.06
PRK12402	337	replication factor C small subunit 2; Reviewed	99.05
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	99.04
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	99.02
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	99.01
PRK06893	229	DNA replication initiation factor; Validated	99.0
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	99.0
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	99.0
PRK05564	313	DNA polymerase III subunit delta'; Validated	98.96
PRK00440	319	rfc replication factor C small subunit; Reviewed	98.96
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	98.95
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	98.94
PRK08903	227	DnaA regulatory inactivator Hda; Validated	98.94
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	98.91
PRK07471	365	DNA polymerase III subunit delta'; Validated	98.89
KOG0736	953	consensus Peroxisome assembly factor 2 containing	98.88
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.87
PRK13341	725	recombination factor protein RarA/unknown domain f	98.87
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	98.87
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	98.85
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	98.83
PRK09112	351	DNA polymerase III subunit delta'; Validated	98.82
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	98.82
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	98.79
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	98.79
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	98.76
PRK08084	235	DNA replication initiation factor; Provisional	98.76
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.76
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	98.75
PRK10865	857	protein disaggregation chaperone; Provisional	98.73
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	98.73
COG0714	329	MoxR-like ATPases [General function prediction onl	98.73
PRK00149	450	dnaA chromosomal replication initiation protein; R	98.72
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	98.7
PRK06620	214	hypothetical protein; Validated	98.69
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	98.69
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	98.69
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	98.68
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	98.65
KOG2028	554	consensus ATPase related to the helicase subunit o	98.65
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	98.63
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	98.62
PRK08727	233	hypothetical protein; Validated	98.61
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	98.61
PRK07399	314	DNA polymerase III subunit delta'; Validated	98.58
PRK05642	234	DNA replication initiation factor; Validated	98.57
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	98.56
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	98.55
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	98.55
PHA02244	383	ATPase-like protein	98.54
PRK12422	445	chromosomal replication initiation protein; Provis	98.54
PRK10865	857	protein disaggregation chaperone; Provisional	98.54
PRK08058	329	DNA polymerase III subunit delta'; Validated	98.53
PRK14088	440	dnaA chromosomal replication initiation protein; P	98.52
CHL00095	821	clpC Clp protease ATP binding subunit	98.52
PRK09087	226	hypothetical protein; Validated	98.52
PF07726	131	AAA_3: ATPase family associated with various cellu	98.5
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.5
PRK05707	328	DNA polymerase III subunit delta'; Validated	98.47
CHL00095	821	clpC Clp protease ATP binding subunit	98.46
PRK13531	498	regulatory ATPase RavA; Provisional	98.45
PRK14086	617	dnaA chromosomal replication initiation protein; P	98.44
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	98.44
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	98.43
PTZ00112	1164	origin recognition complex 1 protein; Provisional	98.42
PRK00411	394	cdc6 cell division control protein 6; Reviewed	98.38
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	98.33
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	98.33
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.33
KOG1969	877	consensus DNA replication checkpoint protein CHL12	98.32
PRK06964	342	DNA polymerase III subunit delta'; Validated	98.31
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	98.3
smart00350	509	MCM minichromosome maintenance proteins.	98.29
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	98.28
PRK14087	450	dnaA chromosomal replication initiation protein; P	98.22
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	98.22
KOG1942	456	consensus DNA helicase, TBP-interacting protein [R	98.11
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	98.1
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	98.07
PRK06871	325	DNA polymerase III subunit delta'; Validated	98.04
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	98.02
PRK06090	319	DNA polymerase III subunit delta'; Validated	98.02
COG1239	423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	98.02
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	98.0
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	97.99
PRK08939	306	primosomal protein DnaI; Reviewed	97.96
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	97.93
PRK08769	319	DNA polymerase III subunit delta'; Validated	97.93
PRK07993	334	DNA polymerase III subunit delta'; Validated	97.93
PRK07952	244	DNA replication protein DnaC; Validated	97.91
PHA02624	647	large T antigen; Provisional	97.9
PRK15455	644	PrkA family serine protein kinase; Provisional	97.86
PRK08118	167	topology modulation protein; Reviewed	97.86
PF08740	187	BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA A	97.85
PRK08699	325	DNA polymerase III subunit delta'; Validated	97.84
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	97.84
PRK07261	171	topology modulation protein; Provisional	97.83
PRK12377	248	putative replication protein; Provisional	97.81
PRK09862	506	putative ATP-dependent protease; Provisional	97.79
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	97.75
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	97.75
smart00382	148	AAA ATPases associated with a variety of cellular	97.75
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	97.7
COG0606	490	Predicted ATPase with chaperone activity [Posttran	97.7
PRK08181	269	transposase; Validated	97.66
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	97.66
PRK08116	268	hypothetical protein; Validated	97.64
COG1484	254	DnaC DNA replication protein [DNA replication, rec	97.61
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.59
PRK04132	846	replication factor C small subunit; Provisional	97.58
COG0593	408	DnaA ATPase involved in DNA replication initiation	97.56
KOG0990	360	consensus Replication factor C, subunit RFC5 [Repl	97.54
PRK05818	261	DNA polymerase III subunit delta'; Validated	97.53
PRK00131	175	aroK shikimate kinase; Reviewed	97.52
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.52
KOG2035	351	consensus Replication factor C, subunit RFC3 [Cell	97.5
PRK11608	326	pspF phage shock protein operon transcriptional ac	97.48
PRK13765	637	ATP-dependent protease Lon; Provisional	97.47
PRK06921	266	hypothetical protein; Provisional	97.46
PTZ00111	915	DNA replication licensing factor MCM4; Provisional	97.43
PRK06835	329	DNA replication protein DnaC; Validated	97.43
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	97.43
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.42
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	97.41
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.39
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	97.36
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	97.33
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	97.33
PRK06526	254	transposase; Provisional	97.29
PHA00729	226	NTP-binding motif containing protein	97.22
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	97.21
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.18
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	97.17
PRK03839	180	putative kinase; Provisional	97.16
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.15
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	97.15
PRK13947	171	shikimate kinase; Provisional	97.15
PRK14737	186	gmk guanylate kinase; Provisional	97.14
PRK14531	183	adenylate kinase; Provisional	97.13
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	97.13
COG1855	604	ATPase (PilT family) [General function prediction	97.12
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	97.11
PRK05917	290	DNA polymerase III subunit delta'; Validated	97.1
PRK13949	169	shikimate kinase; Provisional	97.07
KOG0478	804	consensus DNA replication licensing factor, MCM4 c	97.06
PRK14532	188	adenylate kinase; Provisional	97.05
PHA02774	613	E1; Provisional	97.05
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	97.04
PRK07276	290	DNA polymerase III subunit delta'; Validated	97.04
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	97.03
PRK07132	299	DNA polymerase III subunit delta'; Validated	97.01
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.01
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	97.01
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.0
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	97.0
PRK09183	259	transposase/IS protein; Provisional	96.99
PRK00625	173	shikimate kinase; Provisional	96.97
PF13245	76	AAA_19: Part of AAA domain	96.96
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.95
PLN03210	1153	Resistant to P. syringae 6; Provisional	96.95
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	96.93
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	96.93
PRK06762	166	hypothetical protein; Provisional	96.93
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.89
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	96.87
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	96.86
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.86
KOG0480	764	consensus DNA replication licensing factor, MCM6 c	96.86
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	96.86
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	96.85
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	96.84
PRK06217	183	hypothetical protein; Validated	96.84
PRK13946	184	shikimate kinase; Provisional	96.83
PRK14527	191	adenylate kinase; Provisional	96.83
PRK02496	184	adk adenylate kinase; Provisional	96.83
PRK13406	584	bchD magnesium chelatase subunit D; Provisional	96.83
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	96.82
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.81
PF05272	198	VirE: Virulence-associated protein E; InterPro: IP	96.8
PRK14530	215	adenylate kinase; Provisional	96.8
PRK13948	182	shikimate kinase; Provisional	96.8
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.78
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	96.78
PLN02200	234	adenylate kinase family protein	96.77
PRK06851	367	hypothetical protein; Provisional	96.75
KOG1968	871	consensus Replication factor C, subunit RFC1 (larg	96.75
PRK05057	172	aroK shikimate kinase I; Reviewed	96.74
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.73
TIGR01613	304	primase_Cterm phage/plasmid primase, P4 family, C-	96.73
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	96.7
PRK14528	186	adenylate kinase; Provisional	96.69
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	96.68
PRK00279	215	adk adenylate kinase; Reviewed	96.68
PF05729	166	NACHT: NACHT domain	96.66
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	96.66
PRK03731	171	aroL shikimate kinase II; Reviewed	96.65
PRK08233	182	hypothetical protein; Provisional	96.63
PRK06547	172	hypothetical protein; Provisional	96.6
cd01394	218	radB RadB. The archaeal protein radB shares simila	96.6
PRK05541	176	adenylylsulfate kinase; Provisional	96.6
PRK13764	602	ATPase; Provisional	96.6
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.59
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	96.58
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	96.57
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	96.56
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	96.56
PTZ00088	229	adenylate kinase 1; Provisional	96.55
PRK04040	188	adenylate kinase; Provisional	96.54
PF12774	231	AAA_6: Hydrolytic ATP binding site of dynein motor	96.52
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	96.52
PRK14526	211	adenylate kinase; Provisional	96.51
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	96.51
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	96.51
PRK04182	180	cytidylate kinase; Provisional	96.49
KOG1051	898	consensus Chaperone HSP104 and related ATP-depende	96.48
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	96.47
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	96.44
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.44
PRK06851	367	hypothetical protein; Provisional	96.41
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	96.4
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.4
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	96.39
PF13173	128	AAA_14: AAA domain	96.39
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.37
PHA02530	300	pseT polynucleotide kinase; Provisional	96.37
PRK00300	205	gmk guanylate kinase; Provisional	96.35
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	96.34
PRK06696	223	uridine kinase; Validated	96.33
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.33
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	96.33
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	96.33
PRK06067	234	flagellar accessory protein FlaH; Validated	96.32
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	96.32
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	96.32
KOG0745	564	consensus Putative ATP-dependent Clp-type protease	96.31
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	96.3
PRK12339	197	2-phosphoglycerate kinase; Provisional	96.3
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	96.3
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	96.3
PRK10416	318	signal recognition particle-docking protein FtsY;	96.28
PF00493	331	MCM: MCM2/3/5 family This family extends the MCM d	96.28
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	96.27
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.26
PLN02674	244	adenylate kinase	96.25
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	96.24
PRK01184	184	hypothetical protein; Provisional	96.24
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.23
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.23
PRK04328	249	hypothetical protein; Provisional	96.21
PRK15424	538	propionate catabolism operon regulatory protein Pr	96.21
PRK00889	175	adenylylsulfate kinase; Provisional	96.21
PF00519	432	PPV_E1_C: Papillomavirus helicase; InterPro: IPR00	96.21
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	96.2
PRK09825	176	idnK D-gluconate kinase; Provisional	96.2
PF13555	62	AAA_29: P-loop containing region of AAA domain	96.2
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	96.2
PRK14529	223	adenylate kinase; Provisional	96.17
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.16
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	96.16
PRK08533	230	flagellar accessory protein FlaH; Reviewed	96.14
COG3829	560	RocR Transcriptional regulator containing PAS, AAA	96.12
PRK12338	319	hypothetical protein; Provisional	96.12
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	96.11
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.11
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	96.1
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	96.1
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.09
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.08
PRK13975	196	thymidylate kinase; Provisional	96.07
PRK13833	323	conjugal transfer protein TrbB; Provisional	96.04
PRK05973	237	replicative DNA helicase; Provisional	96.03
PRK05480	209	uridine/cytidine kinase; Provisional	96.03
PRK14738	206	gmk guanylate kinase; Provisional	96.03
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.02
COG2804	500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	96.02
cd00983	325	recA RecA is a bacterial enzyme which has roles in	95.96
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	95.96
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	95.94
TIGR00376	637	DNA helicase, putative. The gene product may repre	95.91
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	95.9
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	95.89
PLN02459	261	probable adenylate kinase	95.88
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	95.88
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	95.85
PRK11545	163	gntK gluconate kinase 1; Provisional	95.85
PF13479	213	AAA_24: AAA domain	95.84
COG3378	517	Phage associated DNA primase [General function pre	95.84
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	95.83
PRK12337	475	2-phosphoglycerate kinase; Provisional	95.83
PRK14974	336	cell division protein FtsY; Provisional	95.82
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	95.81
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	95.81
COG4619	223	ABC-type uncharacterized transport system, ATPase	95.8
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	95.79
PLN02199	303	shikimate kinase	95.79
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	95.77
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	95.76
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	95.75
PRK04220	301	2-phosphoglycerate kinase; Provisional	95.74
TIGR02236	310	recomb_radA DNA repair and recombination protein R	95.73
PF00005	137	ABC_tran: ABC transporter This structure is on hol	95.72
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	95.71
COG1241	682	MCM2 Predicted ATPase involved in replication cont	95.71
PRK06761	282	hypothetical protein; Provisional	95.69
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	95.68
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	95.68
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	95.67
TIGR02533	486	type_II_gspE general secretory pathway protein E.	95.66
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	95.65
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	95.64
cd03115	173	SRP The signal recognition particle (SRP) mediates	95.63
PRK10867	433	signal recognition particle protein; Provisional	95.63
PRK05022	509	anaerobic nitric oxide reductase transcription reg	95.59
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	95.59
PRK13808	333	adenylate kinase; Provisional	95.57
PRK10536	262	hypothetical protein; Provisional	95.57
PTZ00301	210	uridine kinase; Provisional	95.57
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	95.55
PF10443	431	RNA12: RNA12 protein; InterPro: IPR018850 Mitochon	95.55
COG4133	209	CcmA ABC-type transport system involved in cytochr	95.55
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	95.54
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	95.53
PRK07667	193	uridine kinase; Provisional	95.53
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	95.52
PRK09376	416	rho transcription termination factor Rho; Provisio	95.52
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	95.51
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	95.51
PRK09354	349	recA recombinase A; Provisional	95.49
PRK04301	317	radA DNA repair and recombination protein RadA; Va	95.48
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	95.48
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	95.48
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	95.47
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	95.47
PRK08099	399	bifunctional DNA-binding transcriptional repressor	95.46
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	95.46
PRK08356	195	hypothetical protein; Provisional	95.46
PRK00023	225	cmk cytidylate kinase; Provisional	95.43
KOG2170	344	consensus ATPase of the AAA+ superfamily [General	95.42
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	95.39
PLN02165	334	adenylate isopentenyltransferase	95.39
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	95.37
PRK10436	462	hypothetical protein; Provisional	95.36
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	95.36
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	95.34
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	95.34
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	95.33
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	95.32
PRK11823	446	DNA repair protein RadA; Provisional	95.32
PRK12608	380	transcription termination factor Rho; Provisional	95.31
TIGR02538	564	type_IV_pilB type IV-A pilus assembly ATPase PilB.	95.31
PTZ00202	550	tuzin; Provisional	95.3
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	95.29
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	95.29
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	95.28
PRK13851	344	type IV secretion system protein VirB11; Provision	95.27
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	95.27
PRK03846	198	adenylylsulfate kinase; Provisional	95.27
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	95.26
cd01128	249	rho_factor Transcription termination factor rho is	95.26
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	95.26
COG4178	604	ABC-type uncharacterized transport system, permeas	95.25
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	95.24
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	95.24
PRK04132	846	replication factor C small subunit; Provisional	95.23
PRK05439	311	pantothenate kinase; Provisional	95.22
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	95.2
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	95.17
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	95.14
TIGR02688	449	conserved hypothetical protein TIGR02688. Members	95.13
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	95.13
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	95.11
TIGR00959	428	ffh signal recognition particle protein. This mode	95.08
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	95.07
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	95.07
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	95.07
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	95.06
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	95.06
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	95.06
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	95.06
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	95.06
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	95.06
cd03269	210	ABC_putative_ATPase This subfamily is involved in	95.04
PRK14730	195	coaE dephospho-CoA kinase; Provisional	95.04
PF06431	417	Polyoma_lg_T_C: Polyomavirus large T antigen C-ter	95.04
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	95.04
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	95.02
PRK09302	509	circadian clock protein KaiC; Reviewed	94.99
PF04851	184	ResIII: Type III restriction enzyme, res subunit;	94.99
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	94.99
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	94.97
PLN02796	347	D-glycerate 3-kinase	94.97
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	94.97
PRK13695	174	putative NTPase; Provisional	94.96
PTZ00035	337	Rad51 protein; Provisional	94.93
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	94.93
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	94.93
KOG1514	767	consensus Origin recognition complex, subunit 1, a	94.93
COG4525	259	TauB ABC-type taurine transport system, ATPase com	94.92
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	94.91
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	94.9
COG1221	403	PspF Transcriptional regulators containing an AAA-	94.9
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	94.9
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	94.9
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	94.89
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	94.89
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	94.88
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	94.87

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5e-90  Score=686.12  Aligned_cols=399  Identities=50%  Similarity=0.859  Sum_probs=365.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhcCCCCCeEEEEecCCCCCcchHHHHHHHHHhhcCCcccc
Q 013823           13 TLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNLTLVFDEWSGMSRNQVFDAAELYLRTKINPDTE   92 (436)
Q Consensus        13 ~~~~~~~S~~a~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~~~~~~~ti~i~e~~~~~~n~~y~a~~~YL~~~~~~~~~   92 (436)
                      ++|+.+||++|++||+|+|+++++|.+++.|+.+++ ++|++++++|.++.|.|++|+.+|++|.|+|.||++++++.++
T Consensus         2 ~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~y~~~~~-~~l~g~~s~~~~~~~~e~~g~~~n~~~~aie~yl~~k~~~~~~   80 (457)
T KOG0743|consen    2 SVFTAYASLLGSLMFIKSMLQDIIPPSINPYFISAL-RGLFGVFSSYALIRIGEQDGVFRNQLYVAIEVYLSSKSSAIAK   80 (457)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHH-HHhhccCcccEEEEeehhccchHHHHHHHHHHhhhccchhhhh
Confidence            578999999999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             ceeeeccCCCCceeEeccCCCeeEEeecCeeEEEEEEeecCCCCC----CCcceEEEEEecccchhhHHhhhhHHHHHHH
Q 013823           93 RLKVSKTSRQKNFTVSIEKGEEVTDSFQNVQLQWKFVCKEPQNNH----SGEKRYFELSFHKKHKQTVICYYLPHVVERA  168 (436)
Q Consensus        93 rl~~~~~~~~~~~~l~~~~~e~v~D~F~Gv~~~W~~~~~~~~~~~----~~~~~~~~l~f~~~~~~~vl~~yl~~v~~~~  168 (436)
                      |++.+.+.+++++++.++++++|.|+|+||++||.+++..++.+.    ..++|+|+|+|+++||+.|+.+|||||+.++
T Consensus        81 rl~~~~~~~s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~~~~~~~~~~~~r~~~L~f~k~~~e~V~~syl~~v~~~~  160 (457)
T KOG0743|consen   81 RLTQNLSKNSKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNEKWIFVEREREKRYFELTFHKKPRELVTLSYLPYVVSKA  160 (457)
T ss_pred             hhhhhhccccccceEEecCCcEEEEEEeceEEEEEEEEEecCcccccccCCcceEEEEEecCccHHHhHHhHHHHHHHHH
Confidence            999999999999999999999999999999999999998877653    2689999999999999999999999999999


Q ss_pred             HHHHhcceEEEEeecCCCCCCCCCCCCCCCCccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcce
Q 013823          169 KEIKQEEKVVKLYNRECPYDDDDDGGGGGGMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRG  248 (436)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg  248 (436)
                      ++|..+++.+++|++++...+   ....++.|+++.++||++|++|+|++++|+.|++|+..|++++++|+++|++|+||
T Consensus       161 k~I~~~~r~~kl~t~~~~~~~---~~~~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRG  237 (457)
T KOG0743|consen  161 KEILEENRELKLYTNSGKTVI---YTAKGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRG  237 (457)
T ss_pred             HHHHHHHHHHHHhhcCCCccc---ccccCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhcc
Confidence            999999999999999874332   11146799999999999999999999999999999999999999999999999999


Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcchhhcccCC--------------------------CC------------CCC--CCc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVEMKDRQND--------------------------GA------------SVG--SNT  288 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~--------------------------~~------------~~~--~~~  288 (436)
                      ||||||||||||+++.|||++|+.++.+....                          +|            ...  ...
T Consensus       238 YLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~  317 (457)
T KOG0743|consen  238 YLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLS  317 (457)
T ss_pred             ceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeecccccccccccccccccccCCcc
Confidence            99999999999999999999999332221110                          00            001  235


Q ss_pred             ceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHH
Q 013823          289 KLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIE  368 (436)
Q Consensus       289 ~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~  368 (436)
                      .+++|+|||++||+|++||+++||||||||+++|||||+||||||+||+|++|++++++.|+++||+..+ .|.++++|+
T Consensus       318 ~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~-~h~L~~eie  396 (457)
T KOG0743|consen  318 RVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE-DHRLFDEIE  396 (457)
T ss_pred             eeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC-CcchhHHHH
Confidence            6899999999999999999999999999999999999999999999999999999999999999999874 699999999


Q ss_pred             hhhhcCCCCHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHhhhhhccc
Q 013823          369 GLIQSTDVTPAEVAEELMKAD-DADVALEGLVNFLKRKRIQADESKNND  416 (436)
Q Consensus       369 ~l~~~~~~tpaei~~~l~~~~-~~~~al~~l~~~l~~~~~~~~~~~~~~  416 (436)
                      ++..+..+|||||++.+|.++ |++.+++.|+++|++++.+..+...+.
T Consensus       397 ~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~~~~~~~~~~~~  445 (457)
T KOG0743|consen  397 RLIEETEVTPAQVAEELMKNKNDADVALKGLVEALESKKEKRNKDDKEL  445 (457)
T ss_pred             HHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhhhhhhccchhhh
Confidence            999999999999999999888 899999999999999998766655444

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.7e-37  Score=297.91  Aligned_cols=179  Identities=27%  Similarity=0.350  Sum_probs=148.4

Q ss_pred             ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh---------
Q 013823          204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM---------  274 (436)
Q Consensus       204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~---------  274 (436)
                      .-.+..+|++|+|.++++++|++.++.++.+|+.|.++|+.+|+|+|||||||||||+||+|+|+..++.+         
T Consensus       143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV  222 (406)
T COG1222         143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV  222 (406)
T ss_pred             ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence            34455799999999999999999999999999999999999999999999999999999999999988111         


Q ss_pred             ----------------hc-------------------ccCCCCCCCCCcceeecceeecccCcccCCCCeEEEEEecCCc
Q 013823          275 ----------------KD-------------------RQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK  319 (436)
Q Consensus       275 ----------------~~-------------------r~~~~~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~  319 (436)
                                      ..                   |.....+.+.+.++++-+||++|||+.+.  +++-||++||++
T Consensus       223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~--~nvKVI~ATNR~  300 (406)
T COG1222         223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR--GNVKVIMATNRP  300 (406)
T ss_pred             HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC--CCeEEEEecCCc
Confidence                            11                   11111233345678999999999999875  569999999999


Q ss_pred             CCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          320 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       320 ~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      +.|||||+||||||++|+||+|+.++|..|++.+-+.-  ......+++.|+... ++|+|||..+|.
T Consensus       301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM--~l~~dvd~e~la~~~~g~sGAdlkaict  366 (406)
T COG1222         301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM--NLADDVDLELLARLTEGFSGADLKAICT  366 (406)
T ss_pred             cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc--cCccCcCHHHHHHhcCCCchHHHHHHHH
Confidence            99999999999999999999999999999999987654  222233445555543 599999999985

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-33  Score=289.96  Aligned_cols=177  Identities=30%  Similarity=0.386  Sum_probs=150.7

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc---------
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD---------  276 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~---------  276 (436)
                      -+..+|+||+|++++|.+|.+.+..++.+++.|.++|+.+|+|||||||||||||++|+|+|++.+..+..         
T Consensus       428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk  507 (693)
T KOG0730|consen  428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK  507 (693)
T ss_pred             CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHH
Confidence            34479999999999999999999999999999999999999999999999999999999999999822211         


Q ss_pred             ----------------ccCCCC----------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc
Q 013823          277 ----------------RQNDGA----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP  324 (436)
Q Consensus       277 ----------------r~~~~~----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~  324 (436)
                                      |...++                ..++...+.+++||++|||+...  .+++||++||+|+.||+
T Consensus       508 ~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~--k~V~ViAATNRpd~ID~  585 (693)
T KOG0730|consen  508 YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEAL--KNVLVIAATNRPDMIDP  585 (693)
T ss_pred             hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccccc--CcEEEEeccCChhhcCH
Confidence                            111111                12245678999999999999765  45999999999999999


Q ss_pred             cccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCC-CCHHHHHHHHh
Q 013823          325 ALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTD-VTPAEVAEELM  386 (436)
Q Consensus       325 AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~-~tpaei~~~l~  386 (436)
                      |++||||||..|++|+||.++|..|++.++...  .-....++.+|++.++ ||+|||.+.|.
T Consensus       586 ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm--p~~~~vdl~~La~~T~g~SGAel~~lCq  646 (693)
T KOG0730|consen  586 ALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM--PFSEDVDLEELAQATEGYSGAEIVAVCQ  646 (693)
T ss_pred             HHcCCcccceeEeecCccHHHHHHHHHHHHhcC--CCCccccHHHHHHHhccCChHHHHHHHH
Confidence            999999999999999999999999999999876  3333367788888664 99999999986

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.2e-31  Score=269.68  Aligned_cols=177  Identities=24%  Similarity=0.329  Sum_probs=148.9

Q ss_pred             CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh------------
Q 013823          208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK------------  275 (436)
Q Consensus       208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~------------  275 (436)
                      ..+|+||+++++++.++...+..++++++.|+++|+..|.|+|||||||||||.||+|+|++.|+.+.            
T Consensus       507 dVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYV  586 (802)
T KOG0733|consen  507 DVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYV  586 (802)
T ss_pred             CCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHh
Confidence            46899999999999999999999999999999999999999999999999999999999999993221            


Q ss_pred             -------------cccCCCC----------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccc
Q 013823          276 -------------DRQNDGA----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPAL  326 (436)
Q Consensus       276 -------------~r~~~~~----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~Al  326 (436)
                                   .|...+|                .....+.+.+++||.+|||+....+  |.||++||+|+.+|||+
T Consensus       587 GESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~g--V~viaATNRPDiIDpAi  664 (802)
T KOG0733|consen  587 GESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRG--VYVIAATNRPDIIDPAI  664 (802)
T ss_pred             hhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccc--eEEEeecCCCcccchhh
Confidence                         1222222                1234566789999999999977644  99999999999999999


Q ss_pred             cCCCceeEEEEcCCCCHHHHHHHHHHHhcccC---CCCCcHHHHHhhhhcCCCCHHHHHHHHh
Q 013823          327 LRPGRMDVHINMSYCTVHGFKVLASNYLGIKG---KSHSLFGEIEGLIQSTDVTPAEVAEELM  386 (436)
Q Consensus       327 lRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~---~~~~~~~~i~~l~~~~~~tpaei~~~l~  386 (436)
                      +||||||..+++++|+.++|..|++.......   +.+..+++|+....-.+||+||++..+.
T Consensus       665 LRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvr  727 (802)
T KOG0733|consen  665 LRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVR  727 (802)
T ss_pred             cCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHH
Confidence            99999999999999999999999999987432   2344556666655556799999998875

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.6e-31  Score=279.92  Aligned_cols=214  Identities=27%  Similarity=0.353  Sum_probs=170.7

Q ss_pred             CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc--------
Q 013823          207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ--------  278 (436)
Q Consensus       207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~--------  278 (436)
                      .+.+|+||+|.++.|++|.|.+. ||++|+.|.++|...|||+||+||||||||+||+|+|+|.|++++..+        
T Consensus       306 t~V~FkDVAG~deAK~El~E~V~-fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~  384 (774)
T KOG0731|consen  306 TGVKFKDVAGVDEAKEELMEFVK-FLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF  384 (774)
T ss_pred             CCCccccccCcHHHHHHHHHHHH-HhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence            34799999999999999999665 999999999999999999999999999999999999999994432211        


Q ss_pred             -----------------CCCC--------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823          279 -----------------NDGA--------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER  321 (436)
Q Consensus       279 -----------------~~~~--------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~  321 (436)
                                       ..++                    ..+.+...++++||.+|||+.+.  .++||+++||+++.
T Consensus       385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tnr~d~  462 (774)
T KOG0731|consen  385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATNRPDI  462 (774)
T ss_pred             cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccCCccc
Confidence                             1111                    11234557899999999999876  56999999999999


Q ss_pred             CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhc-CCCCHHHHHHHHh--------------
Q 013823          322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM--------------  386 (436)
Q Consensus       322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~-~~~tpaei~~~l~--------------  386 (436)
                      ||+||+||||||++|.++.|+...|..|++.++...... ....++.+++.. .++|+|||+..|.              
T Consensus       463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i  541 (774)
T KOG0731|consen  463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREI  541 (774)
T ss_pred             cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCcc
Confidence            999999999999999999999999999999999865422 334455556554 4699999999874              


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 013823          387 KADDADVALEGLVNFLKRKRIQADESKNNDVKGEEANE  424 (436)
Q Consensus       387 ~~~~~~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  424 (436)
                      ...+.+.|++.++.-++.+......+++.....|+++.
T Consensus       542 ~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagh  579 (774)
T KOG0731|consen  542 GTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGH  579 (774)
T ss_pred             chhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccc
Confidence            12356677777777776666666666666666777654

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.1e-31  Score=268.12  Aligned_cols=173  Identities=28%  Similarity=0.368  Sum_probs=145.1

Q ss_pred             CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCC-------
Q 013823          208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQND-------  280 (436)
Q Consensus       208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~-------  280 (436)
                      ..+|+||-|-++.|+++.+ +..|++.|..|.++|-..|+|+||.||||||||+||+|+|++.+++++....+       
T Consensus       300 nv~F~dVkG~DEAK~ELeE-iVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V  378 (752)
T KOG0734|consen  300 NVTFEDVKGVDEAKQELEE-IVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV  378 (752)
T ss_pred             ccccccccChHHHHHHHHH-HHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence            3579999999999999977 55699999999999999999999999999999999999999999666543322       


Q ss_pred             ------------------CC----------C------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccc
Q 013823          281 ------------------GA----------S------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPAL  326 (436)
Q Consensus       281 ------------------~~----------~------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~Al  326 (436)
                                        +|          +      .....+.++++||.+|||+..+  +++|||++||.|+.||+||
T Consensus       379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qN--eGiIvigATNfpe~LD~AL  456 (752)
T KOG0734|consen  379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQN--EGIIVIGATNFPEALDKAL  456 (752)
T ss_pred             cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcC--CceEEEeccCChhhhhHHh
Confidence                              11          0      0114567999999999999876  4599999999999999999


Q ss_pred             cCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHH
Q 013823          327 LRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEEL  385 (436)
Q Consensus       327 lRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l  385 (436)
                      .||||||++|.+|.||...|.+|++.|+...  .+....+..-++..+ +|++||+++.+
T Consensus       457 ~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki--~~~~~VD~~iiARGT~GFsGAdLaNlV  514 (752)
T KOG0734|consen  457 TRPGRFDRHVTVPLPDVRGRTEILKLYLSKI--PLDEDVDPKIIARGTPGFSGADLANLV  514 (752)
T ss_pred             cCCCccceeEecCCCCcccHHHHHHHHHhcC--CcccCCCHhHhccCCCCCchHHHHHHH
Confidence            9999999999999999999999999999765  333334445566654 69999998866

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=4.4e-30  Score=238.58  Aligned_cols=177  Identities=26%  Similarity=0.401  Sum_probs=143.0

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh----------
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK----------  275 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~----------  275 (436)
                      .+..++.||+|.+-+|++|.+.++.++.+.+.|+..|+.+|||+|||||||||||+|++|+|+.....+.          
T Consensus       149 kpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqk  228 (408)
T KOG0727|consen  149 KPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK  228 (408)
T ss_pred             CCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHH
Confidence            4456999999999999999999999999999999999999999999999999999999999997762111          


Q ss_pred             ---------------cccCCC-------------------CCCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823          276 ---------------DRQNDG-------------------ASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER  321 (436)
Q Consensus       276 ---------------~r~~~~-------------------~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~  321 (436)
                                     .+.+.+                   .+.+.+.++.+-.|||.|||+...  .++-||++||+.+.
T Consensus       229 ylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~--~nvkvimatnradt  306 (408)
T KOG0727|consen  229 YLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT--TNVKVIMATNRADT  306 (408)
T ss_pred             HhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc--cceEEEEecCcccc
Confidence                           111111                   122344567788899999999875  45999999999999


Q ss_pred             CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhc-CCCCHHHHHHHHh
Q 013823          322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM  386 (436)
Q Consensus       322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~-~~~tpaei~~~l~  386 (436)
                      |||||+||||+|++|+||+|+..+++-++...-..-  ......+++.++.. ..++.|+|...|.
T Consensus       307 ldpallrpgrldrkiefplpdrrqkrlvf~titskm--~ls~~vdle~~v~rpdkis~adi~aicq  370 (408)
T KOG0727|consen  307 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKM--NLSDEVDLEDLVARPDKISGADINAICQ  370 (408)
T ss_pred             cCHhhcCCccccccccCCCCchhhhhhhHHhhhhcc--cCCcccCHHHHhcCccccchhhHHHHHH
Confidence            999999999999999999999999888777665443  22333455665544 4599999999886

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=6e-30  Score=241.79  Aligned_cols=180  Identities=26%  Similarity=0.352  Sum_probs=142.8

Q ss_pred             ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh--------
Q 013823          204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK--------  275 (436)
Q Consensus       204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~--------  275 (436)
                      ...+..+|.|++|.+.+.++|.+.++.++.+|++|...|+.+|+|++|||+||||||.||+|+||...+.+.        
T Consensus       177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi  256 (440)
T KOG0726|consen  177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI  256 (440)
T ss_pred             ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence            344557999999999999999999999999999999999999999999999999999999999987651111        


Q ss_pred             ------------------------------------cccCCCCCCCCCcceeecceeecccCcccCCCCeEEEEEecCCc
Q 013823          276 ------------------------------------DRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK  319 (436)
Q Consensus       276 ------------------------------------~r~~~~~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~  319 (436)
                                                          .|...+++...+.++++-.|||.+||+.+.  ..+-||++||++
T Consensus       257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr--gDvKvimATnri  334 (440)
T KOG0726|consen  257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR--GDVKVIMATNRI  334 (440)
T ss_pred             HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc--CCeEEEEecccc
Confidence                                                011111122234556777899999999875  458999999999


Q ss_pred             CCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhh-cCCCCHHHHHHHHhc
Q 013823          320 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQ-STDVTPAEVAEELMK  387 (436)
Q Consensus       320 ~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~-~~~~tpaei~~~l~~  387 (436)
                      +.|||||+||||+|++|+||.||...++.|+..+-..-  .-.-...++.++. ..++++|||...|..
T Consensus       335 e~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~M--tl~~dVnle~li~~kddlSGAdIkAictE  401 (440)
T KOG0726|consen  335 ETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRM--TLAEDVNLEELIMTKDDLSGADIKAICTE  401 (440)
T ss_pred             cccCHhhcCCCccccccccCCCchhhhceeEEEeeccc--chhccccHHHHhhcccccccccHHHHHHH
Confidence            99999999999999999999999999998887654332  1111233455554 456999999998863

>PF14363 AAA_assoc: Domain associated at C-terminal with AAA

Probab=99.95  E-value=2e-28  Score=201.94  Aligned_cols=97  Identities=46%  Similarity=0.838  Sum_probs=93.5

Q ss_pred             hchHHHHHHHHHHHHhhhhc-CCCCCeEEEEecCCCCCcchHHHHHHHHHhhcCCccccceeeeccCCCCceeEeccCCC
Q 013823           35 LIPQQLRSYLCTTFYHYLFN-PLSNNLTLVFDEWSGMSRNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGE  113 (436)
Q Consensus        35 ~~P~~l~~~~~~~~~~~~~~-~~~~~~ti~i~e~~~~~~n~~y~a~~~YL~~~~~~~~~rl~~~~~~~~~~~~l~~~~~e  113 (436)
                      +||++||+++.+++ ++++. +++||+||+|+|++|+.+|++|+||++||+++++++++||++++++++++++++|++||
T Consensus         1 ~~P~~lr~~~~~~~-~~~~~~~~s~~~ti~I~E~~g~~~N~ly~a~~~YL~s~~s~~a~rL~~~~~~~~~~~~l~l~~~e   79 (98)
T PF14363_consen    1 LLPHELRSYLRSLL-RRLFSSRFSPYLTIVIPEFDGLSRNELYDAAQAYLSSKISPSARRLKASKSKNSKNLVLSLDDGE   79 (98)
T ss_pred             CCCHHHHHHHHHHH-HHHHhccCCCcEEEEEEeCCCccccHHHHHHHHHHhhccCcccceeeecccCCCCceEEecCCCC
Confidence            68999999999999 88776 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEeecCeeEEEEEEeec
Q 013823          114 EVTDSFQNVQLQWKFVCKE  132 (436)
Q Consensus       114 ~v~D~F~Gv~~~W~~~~~~  132 (436)
                      +|+|+|+||++||.+++++
T Consensus        80 ~V~D~F~Gv~v~W~~~~~e   98 (98)
T PF14363_consen   80 EVVDVFEGVKVWWSSVCTE   98 (98)
T ss_pred             EEEEEECCEEEEEEEEccC
Confidence            9999999999999998864

>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.2e-28  Score=228.22  Aligned_cols=178  Identities=24%  Similarity=0.295  Sum_probs=144.2

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc--------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD--------  276 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~--------  276 (436)
                      -.+..++.||+|.+.+.+++.+.+..++.+++.|..+|+.+|+|+|+|||||||||.+|+|.|...+..+..        
T Consensus       164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ  243 (424)
T KOG0652|consen  164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ  243 (424)
T ss_pred             cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence            344568999999999999999999999999999999999999999999999999999999999877711110        


Q ss_pred             ------------------------------------ccCCCCCCCCCcceeecceeecccCcccCCCCeEEEEEecCCcC
Q 013823          277 ------------------------------------RQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE  320 (436)
Q Consensus       277 ------------------------------------r~~~~~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~  320 (436)
                                                          |..+....+.+.++++-.|||.+||+.++  +++-||++||+.+
T Consensus       244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~--~~vKviAATNRvD  321 (424)
T KOG0652|consen  244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD--DRVKVIAATNRVD  321 (424)
T ss_pred             hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc--cceEEEeeccccc
Confidence                                                11111122334567888899999999875  6689999999999


Q ss_pred             CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      .|||||+|.||+|++|+||.|+.++|..|+..+-..-  ........++|+..+ +|.+|+....|.
T Consensus       322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKM--nv~~DvNfeELaRsTddFNGAQcKAVcV  386 (424)
T KOG0652|consen  322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKM--NVSDDVNFEELARSTDDFNGAQCKAVCV  386 (424)
T ss_pred             ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhc--CCCCCCCHHHHhhcccccCchhheeeeh
Confidence            9999999999999999999999999999998876654  333334455666654 489998877664

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.7e-28  Score=249.23  Aligned_cols=175  Identities=22%  Similarity=0.252  Sum_probs=144.0

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCC--------
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQND--------  280 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~--------  280 (436)
                      .+|.+|+|.+....++.+.+.. +.+|+.|..+|+.+|||+|||||||||||+||+|||+++++++......        
T Consensus       187 v~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSG  265 (802)
T KOG0733|consen  187 VSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSG  265 (802)
T ss_pred             cchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCc
Confidence            5799999999999999997775 9999999999999999999999999999999999999999665443221        


Q ss_pred             -----------------CC----------------CCCCCcceeecceeecccCcccC--CCCeEEEEEecCCcCCCCcc
Q 013823          281 -----------------GA----------------SVGSNTKLTLSGILNFIDGLWSS--CGDERIIVFTTNHKERIDPA  325 (436)
Q Consensus       281 -----------------~~----------------~~~~~~~~~~s~LL~~ldg~~~~--~~~~~ivI~TTN~~~~lD~A  325 (436)
                                       +|                ...+..++++++||+.||++...  .|+.|+||+|||+|+.||||
T Consensus       266 ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpa  345 (802)
T KOG0733|consen  266 ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPA  345 (802)
T ss_pred             ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHH
Confidence                             11                01134567899999999999654  35779999999999999999


Q ss_pred             ccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          326 LLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       326 llRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      |+|+||||+.|.++.|+..+|..|++.....-  .+...-++.+|+..+ +|-+||+...|.
T Consensus       346 LRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~l--rl~g~~d~~qlA~lTPGfVGADL~AL~~  405 (802)
T KOG0733|consen  346 LRRAGRFDREICLGVPSETAREEILRIICRGL--RLSGDFDFKQLAKLTPGFVGADLMALCR  405 (802)
T ss_pred             HhccccccceeeecCCchHHHHHHHHHHHhhC--CCCCCcCHHHHHhcCCCccchhHHHHHH
Confidence            99999999999999999999999999987643  233334445555543 588999988775

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=5.5e-28  Score=252.28  Aligned_cols=179  Identities=27%  Similarity=0.343  Sum_probs=141.8

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh-----------
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM-----------  274 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~-----------  274 (436)
                      -|..+|+||+|.+++|++|.+.|..++++++.|.. |..++.|+|||||||||||.+|+|+|.++.+.+           
T Consensus       666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM  744 (953)
T KOG0736|consen  666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM  744 (953)
T ss_pred             CCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence            34468999999999999999999999999999865 777788999999999999999999999998221           


Q ss_pred             --------------hcccCCCC------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCC
Q 013823          275 --------------KDRQNDGA------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERI  322 (436)
Q Consensus       275 --------------~~r~~~~~------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~l  322 (436)
                                    ..|+..+|                  +.++...+++|+||.+|||+..+....++||++||+||.|
T Consensus       745 YVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLL  824 (953)
T KOG0736|consen  745 YVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLL  824 (953)
T ss_pred             HhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcccc
Confidence                          12222222                  2345567889999999999986667789999999999999


Q ss_pred             CccccCCCceeEEEEcCCCCHHH-HHHHHHHHhcccC-CCCCcHHHHHhhhhcCCCCHHHHHHHHh
Q 013823          323 DPALLRPGRMDVHINMSYCTVHG-FKVLASNYLGIKG-KSHSLFGEIEGLIQSTDVTPAEVAEELM  386 (436)
Q Consensus       323 D~AllRpGR~d~~I~~~~p~~~~-r~~i~~~~l~~~~-~~~~~~~~i~~l~~~~~~tpaei~~~l~  386 (436)
                      ||||+||||||+-++++.+...+ +..+++..-+... +...+..+|++.++ .++|+||+-..|-
T Consensus       825 DpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp-~~~TGADlYsLCS  889 (953)
T KOG0736|consen  825 DPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCP-PNMTGADLYSLCS  889 (953)
T ss_pred             ChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCC-cCCchhHHHHHHH
Confidence            99999999999999999887654 6666666544332 24445555655553 3599999988774

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=99.95  E-value=1.2e-27  Score=244.07  Aligned_cols=177  Identities=26%  Similarity=0.386  Sum_probs=141.5

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc--------
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR--------  277 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r--------  277 (436)
                      .+..+|++|+|.+.+|++|.+.+..++.+++.|.++|+++|+|+|||||||||||++|+++|++++..+...        
T Consensus       139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k  218 (398)
T PTZ00454        139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQK  218 (398)
T ss_pred             CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHH
Confidence            456799999999999999999999999999999999999999999999999999999999999988322110        


Q ss_pred             -----------------cCCCC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823          278 -----------------QNDGA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER  321 (436)
Q Consensus       278 -----------------~~~~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~  321 (436)
                                       ...++                   ..+......+..||+.+|++...  .+++||+|||+++.
T Consensus       219 ~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~--~~v~VI~aTN~~d~  296 (398)
T PTZ00454        219 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT--TNVKVIMATNRADT  296 (398)
T ss_pred             hcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC--CCEEEEEecCCchh
Confidence                             00000                   00111234567788899998654  35899999999999


Q ss_pred             CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      ||||++||||||.+|+|++|+.++|..||+.++...+  .....++..++..+ ++|+|||...|.
T Consensus       297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~--l~~dvd~~~la~~t~g~sgaDI~~l~~  360 (398)
T PTZ00454        297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN--LSEEVDLEDFVSRPEKISAADIAAICQ  360 (398)
T ss_pred             CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC--CCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999987542  12223455555543 699999998875

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=9.2e-28  Score=234.71  Aligned_cols=174  Identities=23%  Similarity=0.314  Sum_probs=141.8

Q ss_pred             CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc----------
Q 013823          208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR----------  277 (436)
Q Consensus       208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r----------  277 (436)
                      ...|+||+|+.+.|+.|.+.+..++..|++|+.+-.|| +|+|++||||||||+||+|+|.+++..++..          
T Consensus       208 ~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPW-kgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwR  286 (491)
T KOG0738|consen  208 NIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPW-KGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWR  286 (491)
T ss_pred             CcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhccccc-ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhc
Confidence            36899999999999999999999999999999887777 7999999999999999999999999222221          


Q ss_pred             --------------------------------cCCCCCCCCCcceeecceeecccCcccCCCC--eEEEEEecCCcCCCC
Q 013823          278 --------------------------------QNDGASVGSNTKLTLSGILNFIDGLWSSCGD--ERIIVFTTNHKERID  323 (436)
Q Consensus       278 --------------------------------~~~~~~~~~~~~~~~s~LL~~ldg~~~~~~~--~~ivI~TTN~~~~lD  323 (436)
                                                      +......++.+++..+.||..|||+......  -|+|+++||.||+||
T Consensus       287 GeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiD  366 (491)
T KOG0738|consen  287 GESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDID  366 (491)
T ss_pred             cchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchH
Confidence                                            1122234456788999999999999754222  267788999999999


Q ss_pred             ccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          324 PALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       324 ~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      +||+|  ||...|++|+|+.++|..|++..|+...  ....-.++.+++.. +||++||..+|.
T Consensus       367 EAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~--~~~~~~~~~lae~~eGySGaDI~nvCr  426 (491)
T KOG0738|consen  367 EALRR--RLEKRIYIPLPDAEARSALIKILLRSVE--LDDPVNLEDLAERSEGYSGADITNVCR  426 (491)
T ss_pred             HHHHH--HHhhheeeeCCCHHHHHHHHHHhhcccc--CCCCccHHHHHHHhcCCChHHHHHHHH
Confidence            99999  9999999999999999999999997653  22223344555544 599999999885

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.6e-28  Score=226.58  Aligned_cols=178  Identities=25%  Similarity=0.327  Sum_probs=141.8

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch-----------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE-----------  273 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~-----------  273 (436)
                      .-+..+++-++|.+.+.++|.+.++.+.++|+.|..+|++.|+|+|||||||||||.||+|+|.+....           
T Consensus       140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq  219 (404)
T KOG0728|consen  140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ  219 (404)
T ss_pred             hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence            344568999999999999999999999999999999999999999999999999999999999887611           


Q ss_pred             --------------hhcc-------------------cCCCCCCCCCcceeecceeecccCcccCCCCeEEEEEecCCcC
Q 013823          274 --------------MKDR-------------------QNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE  320 (436)
Q Consensus       274 --------------~~~r-------------------~~~~~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~  320 (436)
                                    ...|                   ...+.+.+++.++++-.|||.+||+...  .++-||++||+.+
T Consensus       220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat--knikvimatnrid  297 (404)
T KOG0728|consen  220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT--KNIKVIMATNRID  297 (404)
T ss_pred             HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc--cceEEEEeccccc
Confidence                          1111                   1111122345567888899999999875  5588999999999


Q ss_pred             CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      .|||||+||||+|++|+||.|+.++|..|++.+-..-  .-..--++..+++.- +.++|++...|.
T Consensus       298 ild~allrpgridrkiefp~p~e~ar~~ilkihsrkm--nl~rgi~l~kiaekm~gasgaevk~vct  362 (404)
T KOG0728|consen  298 ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM--NLTRGINLRKIAEKMPGASGAEVKGVCT  362 (404)
T ss_pred             cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh--chhcccCHHHHHHhCCCCccchhhhhhh
Confidence            9999999999999999999999999999998876543  111122334444433 478888888775

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=5.8e-28  Score=225.99  Aligned_cols=183  Identities=25%  Similarity=0.326  Sum_probs=148.9

Q ss_pred             cccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh------
Q 013823          201 GSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM------  274 (436)
Q Consensus       201 ~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~------  274 (436)
                      ..+.-.+..++.||+|-.++.+.|.+.++.++.+|+.|-.+|+.+|+|+|||||||||||.+|+|+|+..+.-+      
T Consensus       166 m~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigs  245 (435)
T KOG0729|consen  166 MQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGS  245 (435)
T ss_pred             EEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhH
Confidence            34445566799999999999999999999999999999999999999999999999999999999999887111      


Q ss_pred             -----------------h--cc-------------------cCCCCCCCCCcceeecceeecccCcccCCCCeEEEEEec
Q 013823          275 -----------------K--DR-------------------QNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTT  316 (436)
Q Consensus       275 -----------------~--~r-------------------~~~~~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TT  316 (436)
                                       +  .|                   ...+.+.+++.++++-.|++.+||+...  .++-|+++|
T Consensus       246 elvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr--gnikvlmat  323 (435)
T KOG0729|consen  246 ELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR--GNIKVLMAT  323 (435)
T ss_pred             HHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC--CCeEEEeec
Confidence                             0  01                   1111123345667888899999999876  448899999


Q ss_pred             CCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc-CCCCCcHHHHHhhhhcCCCCHHHHHHHHhc
Q 013823          317 NHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK-GKSHSLFGEIEGLIQSTDVTPAEVAEELMK  387 (436)
Q Consensus       317 N~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~-~~~~~~~~~i~~l~~~~~~tpaei~~~l~~  387 (436)
                      |+|+.|||||+||||+|++++|.+|+.+.|..|++.+-..- ......++-++.|+..  -|+|+|...|..
T Consensus       324 nrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpn--stgaeirsvcte  393 (435)
T KOG0729|consen  324 NRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPN--STGAEIRSVCTE  393 (435)
T ss_pred             CCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCC--CcchHHHHHHHH
Confidence            99999999999999999999999999999998887665432 1244557777888764  599999998863

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.4e-27  Score=249.47  Aligned_cols=212  Identities=26%  Similarity=0.335  Sum_probs=170.2

Q ss_pred             CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCC------
Q 013823          207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQND------  280 (436)
Q Consensus       207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~------  280 (436)
                      ...+|.|++|.++.|+++.+.+ .|+++|..|.++|...|+|+||+||||||||+||+|+|++.+++++..+.+      
T Consensus       145 ~~v~F~DVAG~dEakeel~EiV-dfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf  223 (596)
T COG0465         145 VKVTFADVAGVDEAKEELSELV-DFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF  223 (596)
T ss_pred             cCcChhhhcCcHHHHHHHHHHH-HHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence            3478999999999999998855 599999999999999999999999999999999999999999554322211      


Q ss_pred             -------------------CC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCC
Q 013823          281 -------------------GA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERI  322 (436)
Q Consensus       281 -------------------~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~l  322 (436)
                                         +|                   ..+.+...++++||.+|||+..+  +.++|+++||+|+-|
T Consensus       224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~--~gviviaaTNRpdVl  301 (596)
T COG0465         224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN--EGVIVIAATNRPDVL  301 (596)
T ss_pred             cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC--CceEEEecCCCcccc
Confidence                               11                   11123346999999999999854  559999999999999


Q ss_pred             CccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh--------------c
Q 013823          323 DPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM--------------K  387 (436)
Q Consensus       323 D~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~--------------~  387 (436)
                      ||||+||||||++|.++.||...|++|++-+.....  .....++..++..+ +++.|++++.+-              .
T Consensus       302 D~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~--l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~  379 (596)
T COG0465         302 DPALLRPGRFDRQILVELPDIKGREQILKVHAKNKP--LAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEIT  379 (596)
T ss_pred             hHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCC--CCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEe
Confidence            999999999999999999999999999997776542  11222333344443 589999988772              2


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 013823          388 ADDADVALEGLVNFLKRKRIQADESKNNDVKGEEAN  423 (436)
Q Consensus       388 ~~~~~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~  423 (436)
                      ..+.+.|.+.++...+.+.....+.+++....||++
T Consensus       380 ~~~i~ea~drv~~G~erks~vise~ek~~~AYhEag  415 (596)
T COG0465         380 MRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAG  415 (596)
T ss_pred             ccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHH
Confidence            357889999999988888877788888888888775

>TIGR03689 pup_AAA proteasome ATPase

Probab=99.94  E-value=1.5e-26  Score=240.66  Aligned_cols=149  Identities=28%  Similarity=0.414  Sum_probs=124.4

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh----------
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK----------  275 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~----------  275 (436)
                      .++.+|++|+|.++++++|.+.+..++.+++.|...|+++++|+|||||||||||++|+++|++++..+.          
T Consensus       176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl  255 (512)
T TIGR03689       176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL  255 (512)
T ss_pred             CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence            3457999999999999999999999999999999999999999999999999999999999999752200          


Q ss_pred             cc-------------------------c----CCCC--------------C---CCCCcceeecceeecccCcccCCCCe
Q 013823          276 DR-------------------------Q----NDGA--------------S---VGSNTKLTLSGILNFIDGLWSSCGDE  309 (436)
Q Consensus       276 ~r-------------------------~----~~~~--------------~---~~~~~~~~~s~LL~~ldg~~~~~~~~  309 (436)
                      ..                         .    ..++              .   .....+..++.||++||++...  ++
T Consensus       256 ~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~--~~  333 (512)
T TIGR03689       256 NIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL--DN  333 (512)
T ss_pred             eccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC--Cc
Confidence            00                         0    0000              0   0011234567899999999764  45


Q ss_pred             EEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          310 RIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       310 ~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                      ++||+|||+++.||||++||||||.+|+|++|+.++|+.|+++|+..
T Consensus       334 ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~  380 (512)
T TIGR03689       334 VIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD  380 (512)
T ss_pred             eEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999864

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=99.93  E-value=8e-26  Score=232.27  Aligned_cols=179  Identities=25%  Similarity=0.332  Sum_probs=140.9

Q ss_pred             ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc-----
Q 013823          204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ-----  278 (436)
Q Consensus       204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~-----  278 (436)
                      ...++.+|++|+|.++++++|.+.+..++.+++.|..+|+.+++|+|||||||||||++|+++|++++..+....     
T Consensus       175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~  254 (438)
T PTZ00361        175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI  254 (438)
T ss_pred             ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence            345567999999999999999999999999999999999999999999999999999999999998873221110     


Q ss_pred             --------------------CCCC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCc
Q 013823          279 --------------------NDGA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK  319 (436)
Q Consensus       279 --------------------~~~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~  319 (436)
                                          ..++                   ........++..||+.+|++...  .++.||+|||++
T Consensus       255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~--~~V~VI~ATNr~  332 (438)
T PTZ00361        255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR--GDVKVIMATNRI  332 (438)
T ss_pred             hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc--CCeEEEEecCCh
Confidence                                0000                   00011133456788888888654  358999999999


Q ss_pred             CCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhc-CCCCHHHHHHHHh
Q 013823          320 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM  386 (436)
Q Consensus       320 ~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~-~~~tpaei~~~l~  386 (436)
                      +.||+|++||||||.+|+|+.|+.++|..|++.++....  .....++..++.. .++|+|+|..+|.
T Consensus       333 d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~--l~~dvdl~~la~~t~g~sgAdI~~i~~  398 (438)
T PTZ00361        333 ESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMT--LAEDVDLEEFIMAKDELSGADIKAICT  398 (438)
T ss_pred             HHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCC--CCcCcCHHHHHHhcCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999986542  1222345555544 3699999998775

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=99.93  E-value=1.1e-25  Score=230.14  Aligned_cols=177  Identities=24%  Similarity=0.314  Sum_probs=138.9

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc--------
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR--------  277 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r--------  277 (436)
                      .+..+|++|+|.+++++.|.+.+..++.+++.|..+|+.+++|+|||||||||||++|+++|++++..+...        
T Consensus       125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~  204 (389)
T PRK03992        125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK  204 (389)
T ss_pred             CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence            345689999999999999999999999999999999999999999999999999999999999988322111        


Q ss_pred             -----------------cCCCC--------------CC-----CCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823          278 -----------------QNDGA--------------SV-----GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER  321 (436)
Q Consensus       278 -----------------~~~~~--------------~~-----~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~  321 (436)
                                       ...++              ..     +.....++..|++.+|++...  .+++||+|||+++.
T Consensus       205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~--~~v~VI~aTn~~~~  282 (389)
T PRK03992        205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR--GNVKIIAATNRIDI  282 (389)
T ss_pred             hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC--CCEEEEEecCChhh
Confidence                             00000              00     011123456678888887543  45899999999999


Q ss_pred             CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      +|+|++||||||..|+||.|+.++|..|++.++......  ...++..++..+ ++++++|..+|.
T Consensus       283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~--~~~~~~~la~~t~g~sgadl~~l~~  346 (389)
T PRK03992        283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA--DDVDLEELAELTEGASGADLKAICT  346 (389)
T ss_pred             CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC--CcCCHHHHHHHcCCCCHHHHHHHHH
Confidence            999999999999999999999999999999998654211  112345555543 699999998875

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.93  E-value=1.3e-25  Score=246.74  Aligned_cols=175  Identities=25%  Similarity=0.307  Sum_probs=142.2

Q ss_pred             CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc---------
Q 013823          208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ---------  278 (436)
Q Consensus       208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~---------  278 (436)
                      ..+|++|+|.+++|+.|.+.+..++..++.|.++|+.+++|+|||||||||||++|+++|++++..+....         
T Consensus       449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~v  528 (733)
T TIGR01243       449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWV  528 (733)
T ss_pred             ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhccc
Confidence            45899999999999999999999999999999999999999999999999999999999999983322111         


Q ss_pred             ----------------CCCC-----------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCcc
Q 013823          279 ----------------NDGA-----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPA  325 (436)
Q Consensus       279 ----------------~~~~-----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~A  325 (436)
                                      ..++                 .......+.++.||.+|||+...  .+++||+|||+|+.||||
T Consensus       529 Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~--~~v~vI~aTn~~~~ld~a  606 (733)
T TIGR01243       529 GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL--SNVVVIAATNRPDILDPA  606 (733)
T ss_pred             CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC--CCEEEEEeCCChhhCCHh
Confidence                            0000                 00112345678899999998654  459999999999999999


Q ss_pred             ccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          326 LLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       326 llRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      ++||||||.+|++|+|+.++|..||+.++...  ......++..++..+ ++|+|||...|.
T Consensus       607 llRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~--~~~~~~~l~~la~~t~g~sgadi~~~~~  666 (733)
T TIGR01243       607 LLRPGRFDRLILVPPPDEEARKEIFKIHTRSM--PLAEDVDLEELAEMTEGYTGADIEAVCR  666 (733)
T ss_pred             hcCCCccceEEEeCCcCHHHHHHHHHHHhcCC--CCCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence            99999999999999999999999999887654  222233456666654 599999988774

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.93  E-value=8.2e-26  Score=238.10  Aligned_cols=176  Identities=27%  Similarity=0.390  Sum_probs=140.1

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc-------
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ-------  278 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~-------  278 (436)
                      .+..+|++|+|.+++|+++.+.+. ++..++.|...|...++|+|||||||||||++|+++|++++.++....       
T Consensus        49 ~~~~~~~di~g~~~~k~~l~~~~~-~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~  127 (495)
T TIGR01241        49 KPKVTFKDVAGIDEAKEELMEIVD-FLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM  127 (495)
T ss_pred             CCCCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence            445799999999999999987555 689999999999999999999999999999999999999983332111       


Q ss_pred             ------------------CCCC--------------C-----CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823          279 ------------------NDGA--------------S-----VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER  321 (436)
Q Consensus       279 ------------------~~~~--------------~-----~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~  321 (436)
                                        ..++              .     .......+++.||+.||++...  ++++||+|||+|+.
T Consensus       128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~--~~v~vI~aTn~~~~  205 (495)
T TIGR01241       128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN--TGVIVIAATNRPDV  205 (495)
T ss_pred             HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC--CCeEEEEecCChhh
Confidence                              0001              0     0112235677899999998654  45999999999999


Q ss_pred             CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      ||||++||||||.+|+++.|+.++|..|++.++....  .....++..++... ++|++||...+.
T Consensus       206 ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~--~~~~~~l~~la~~t~G~sgadl~~l~~  269 (495)
T TIGR01241       206 LDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK--LAPDVDLKAVARRTPGFSGADLANLLN  269 (495)
T ss_pred             cCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC--CCcchhHHHHHHhCCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999987642  22334556666654 599999988764

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.2e-25  Score=231.05  Aligned_cols=199  Identities=24%  Similarity=0.304  Sum_probs=158.1

Q ss_pred             CccccccCCC--CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch---
Q 013823          199 MWGSINLEHP--STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE---  273 (436)
Q Consensus       199 ~w~~~~~~~~--~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~---  273 (436)
                      ..+.+.+..+  ..|++|+|..++|+.+.+.+..+.+.+..|...+++.+.|+|||||||||||.||.|+|...+..   
T Consensus       652 aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fis  731 (952)
T KOG0735|consen  652 ALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFIS  731 (952)
T ss_pred             HhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEE
Confidence            3444554444  47999999999999999999999999999999999999999999999999999999999988811   


Q ss_pred             --------------------hhcc--cCCCC----------------CCCCCcceeecceeecccCcccCCCCeEEEEEe
Q 013823          274 --------------------MKDR--QNDGA----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFT  315 (436)
Q Consensus       274 --------------------~~~r--~~~~~----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~T  315 (436)
                                          ++.|  ...+|                ...+...+.+++||.+|||...-  +++.|+++
T Consensus       732 vKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl--~GV~i~aa  809 (952)
T KOG0735|consen  732 VKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGL--DGVYILAA  809 (952)
T ss_pred             ecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccccc--ceEEEEEe
Confidence                                1211  11111                22245667899999999999765  45999999


Q ss_pred             cCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHhccCCHHHH
Q 013823          316 TNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELMKADDADVA  394 (436)
Q Consensus       316 TN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~~~~~~~~a  394 (436)
                      |.+|+.|||||+||||+|+.++.|.|+..+|..|+...-...  ......+++.++..+ +||+||++..|.     .+-
T Consensus       810 TsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~--~~~~~vdl~~~a~~T~g~tgADlq~ll~-----~A~  882 (952)
T KOG0735|consen  810 TSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL--LKDTDVDLECLAQKTDGFTGADLQSLLY-----NAQ  882 (952)
T ss_pred             cCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc--CCccccchHHHhhhcCCCchhhHHHHHH-----HHH
Confidence            999999999999999999999999999999999999876644  334455666666654 599999998886     233


Q ss_pred             HHHHHHHHHHHH
Q 013823          395 LEGLVNFLKRKR  406 (436)
Q Consensus       395 l~~l~~~l~~~~  406 (436)
                      +..+.++|.+..
T Consensus       883 l~avh~~l~~~~  894 (952)
T KOG0735|consen  883 LAAVHEILKRED  894 (952)
T ss_pred             HHHHHHHHHhcC
Confidence            556666665544

>CHL00195 ycf46 Ycf46; Provisional

Probab=99.92  E-value=1.9e-25  Score=232.60  Aligned_cols=173  Identities=18%  Similarity=0.181  Sum_probs=131.1

Q ss_pred             CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCC------
Q 013823          207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQND------  280 (436)
Q Consensus       207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~------  280 (436)
                      +..+|++|+|.+.+|+.+.+....|.   ......|++.|+|+|||||||||||++|+++|++++.++...+..      
T Consensus       223 ~~~~~~dvgGl~~lK~~l~~~~~~~~---~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~  299 (489)
T CHL00195        223 VNEKISDIGGLDNLKDWLKKRSTSFS---KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI  299 (489)
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHhh---HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence            34679999999999999987665443   334677999999999999999999999999999998443322110      


Q ss_pred             -------------------CC-----------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc
Q 013823          281 -------------------GA-----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP  324 (436)
Q Consensus       281 -------------------~~-----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~  324 (436)
                                         ++                 ...+...+.++.|++.|+..    ...++||+|||+++.|||
T Consensus       300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~----~~~V~vIaTTN~~~~Ld~  375 (489)
T CHL00195        300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK----KSPVFVVATANNIDLLPL  375 (489)
T ss_pred             cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC----CCceEEEEecCChhhCCH
Confidence                               00                 01112334455566666643    345899999999999999


Q ss_pred             cccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          325 ALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       325 AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      |++||||||.+|+++.|+.++|..||+.++...........++..|+..+ +||+|||.+.+.
T Consensus       376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~  438 (489)
T CHL00195        376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSII  438 (489)
T ss_pred             HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHH
Confidence            99999999999999999999999999999987532222234567777655 699999988774

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=4.1e-25  Score=215.96  Aligned_cols=188  Identities=21%  Similarity=0.262  Sum_probs=150.8

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhC-CCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCC-------
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQND-------  280 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g-~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~-------  280 (436)
                      .+|+||+|.+.+|+.+.+.+..++..++.|...+ ..+++|+|||||||||||++|+|+|++.|..+.....+       
T Consensus        89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf  168 (386)
T KOG0737|consen   89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF  168 (386)
T ss_pred             eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence            5899999999999999999999999999998544 46679999999999999999999999999322221111       


Q ss_pred             ----------------------------------CCCCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccc
Q 013823          281 ----------------------------------GASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPAL  326 (436)
Q Consensus       281 ----------------------------------~~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~Al  326 (436)
                                                        ...+++....+.++|....||+.+..+..++|+++||+|.+||.|+
T Consensus       169 gE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAi  248 (386)
T KOG0737|consen  169 GEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAI  248 (386)
T ss_pred             HHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHH
Confidence                                              1122233445566788889999988777899999999999999999


Q ss_pred             cCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 013823          327 LRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELMKADDADVALEGLVNFLKRK  405 (436)
Q Consensus       327 lRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~~~~~~~~al~~l~~~l~~~  405 (436)
                      +|  ||...++++.|+.++|.+|++-+|....  ....-++.+++..+ +||+.||.+.|.     .+|+..+.++++..
T Consensus       249 iR--R~p~rf~V~lP~~~qR~kILkviLk~e~--~e~~vD~~~iA~~t~GySGSDLkelC~-----~Aa~~~ire~~~~~  319 (386)
T KOG0737|consen  249 IR--RLPRRFHVGLPDAEQRRKILKVILKKEK--LEDDVDLDEIAQMTEGYSGSDLKELCR-----LAALRPIRELLVSE  319 (386)
T ss_pred             HH--hCcceeeeCCCchhhHHHHHHHHhcccc--cCcccCHHHHHHhcCCCcHHHHHHHHH-----HHhHhHHHHHHHhc
Confidence            99  9999999999999999999999998763  33334555556554 599999999997     44566666666664

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=3.8e-24  Score=225.58  Aligned_cols=179  Identities=25%  Similarity=0.354  Sum_probs=144.2

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc--------
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR--------  277 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r--------  277 (436)
                      .+..+|++++|+++.|+.+.+.+..++..++.|...|+.+++|+|||||||||||++|+|+|++++..+...        
T Consensus       236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk  315 (494)
T COG0464         236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK  315 (494)
T ss_pred             CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence            344699999999999999999999999999999999999999999999999999999999999888322211        


Q ss_pred             -----------------cCCCC--------------C--CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc
Q 013823          278 -----------------QNDGA--------------S--VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP  324 (436)
Q Consensus       278 -----------------~~~~~--------------~--~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~  324 (436)
                                       ...++              .  .+....+.+++||.++||+...  .+++||+|||+|+.+|+
T Consensus       316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~--~~v~vi~aTN~p~~ld~  393 (494)
T COG0464         316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKA--EGVLVIAATNRPDDLDP  393 (494)
T ss_pred             ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCcc--CceEEEecCCCccccCH
Confidence                             11111              0  0111247889999999999765  45999999999999999


Q ss_pred             cccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhc-CCCCHHHHHHHHh
Q 013823          325 ALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM  386 (436)
Q Consensus       325 AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~-~~~tpaei~~~l~  386 (436)
                      |++||||||..|++|.|+.++|..+++.++...........++..++.. .+++++||...|.
T Consensus       394 a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~  456 (494)
T COG0464         394 ALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVR  456 (494)
T ss_pred             hhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHH
Confidence            9999999999999999999999999999998542111122344555553 3499999998885

>CHL00176 ftsH cell division protein; Validated

Probab=99.91  E-value=2.1e-24  Score=231.38  Aligned_cols=176  Identities=30%  Similarity=0.349  Sum_probs=140.3

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc-------
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ-------  278 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~-------  278 (436)
                      ....+|++|+|.++.|+++.+. ..+++.++.|..+|...++|+|||||||||||++|+++|++++.++....       
T Consensus       177 ~~~~~f~dv~G~~~~k~~l~ei-v~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~  255 (638)
T CHL00176        177 DTGITFRDIAGIEEAKEEFEEV-VSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM  255 (638)
T ss_pred             CCCCCHHhccChHHHHHHHHHH-HHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence            4457999999999999999775 55789999999999999999999999999999999999999883332111       


Q ss_pred             ------------------CCCC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823          279 ------------------NDGA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER  321 (436)
Q Consensus       279 ------------------~~~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~  321 (436)
                                        ..++                   ..+.....+++.||..+|++...  .+++||+|||+++.
T Consensus       256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~--~~ViVIaaTN~~~~  333 (638)
T CHL00176        256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN--KGVIVIAATNRVDI  333 (638)
T ss_pred             hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC--CCeeEEEecCchHh
Confidence                              0000                   00112234677889999998654  45999999999999


Q ss_pred             CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      +|+|++||||||.+|+++.|+.++|..|++.++...  ......++..++... +++++||...+.
T Consensus       334 LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~--~~~~d~~l~~lA~~t~G~sgaDL~~lvn  397 (638)
T CHL00176        334 LDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK--KLSPDVSLELIARRTPGFSGADLANLLN  397 (638)
T ss_pred             hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc--ccchhHHHHHHHhcCCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999764  233344566677655 499999988774

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.91  E-value=1.7e-24  Score=202.20  Aligned_cols=171  Identities=20%  Similarity=0.291  Sum_probs=136.7

Q ss_pred             CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc---------
Q 013823          207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR---------  277 (436)
Q Consensus       207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r---------  277 (436)
                      +..+||||+|+++.|+... .+..++.+|+.|.++   .|+.+|+|||||||||++|+|+|++.++++...         
T Consensus       116 ~~it~ddViGqEeAK~kcr-li~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh  191 (368)
T COG1223         116 SDITLDDVIGQEEAKRKCR-LIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH  191 (368)
T ss_pred             ccccHhhhhchHHHHHHHH-HHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence            3468999999999999874 466789999877654   689999999999999999999999999433211         


Q ss_pred             ----------------cCCCC-----------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc
Q 013823          278 ----------------QNDGA-----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP  324 (436)
Q Consensus       278 ----------------~~~~~-----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~  324 (436)
                                      ...+|                 ...++....++.||..|||+.++  ++++.|++||+|+.|||
T Consensus       192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~en--eGVvtIaaTN~p~~LD~  269 (368)
T COG1223         192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKEN--EGVVTIAATNRPELLDP  269 (368)
T ss_pred             hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccC--CceEEEeecCChhhcCH
Confidence                            11122                 11234456788999999999865  56999999999999999


Q ss_pred             cccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHhc
Q 013823          325 ALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELMK  387 (436)
Q Consensus       325 AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~~  387 (436)
                      |++.  ||...|+|.+|+.++|..|++.|....  ..+....+..++..+ ++|+.||.+-+++
T Consensus       270 aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~--Plpv~~~~~~~~~~t~g~SgRdikekvlK  329 (368)
T COG1223         270 AIRS--RFEEEIEFKLPNDEERLEILEYYAKKF--PLPVDADLRYLAAKTKGMSGRDIKEKVLK  329 (368)
T ss_pred             HHHh--hhhheeeeeCCChHHHHHHHHHHHHhC--CCccccCHHHHHHHhCCCCchhHHHHHHH
Confidence            9999  999999999999999999999998876  444444566666654 5999999987763

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.90  E-value=1.5e-23  Score=212.88  Aligned_cols=178  Identities=24%  Similarity=0.318  Sum_probs=136.6

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc-------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR-------  277 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r-------  277 (436)
                      ..+..+|++|+|.+++++.|.+.+..++.+++.|..+|+.+++|+|||||||||||++|+++|++++..+...       
T Consensus       115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~  194 (364)
T TIGR01242       115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR  194 (364)
T ss_pred             cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence            3455689999999999999999999999999999999999999999999999999999999999888222110       


Q ss_pred             ------------------cCCCC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcC
Q 013823          278 ------------------QNDGA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE  320 (436)
Q Consensus       278 ------------------~~~~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~  320 (436)
                                        ...++                   ..+......+..+++.+|++...  +++.||+|||+++
T Consensus       195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~--~~v~vI~ttn~~~  272 (364)
T TIGR01242       195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR--GNVKVIAATNRPD  272 (364)
T ss_pred             HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC--CCEEEEEecCChh
Confidence                              00000                   00011123456677777776443  3589999999999


Q ss_pred             CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      .+|++++||||||..|+|+.|+.++|..|++.++.......  ..++..++..+ ++++++|...+.
T Consensus       273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~--~~~~~~la~~t~g~sg~dl~~l~~  337 (364)
T TIGR01242       273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE--DVDLEAIAKMTEGASGADLKAICT  337 (364)
T ss_pred             hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc--cCCHHHHHHHcCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999876542111  12344444433 599999988764

Many proteins may score above the trusted cutoff because an internal

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.3e-24  Score=206.22  Aligned_cols=174  Identities=24%  Similarity=0.329  Sum_probs=139.7

Q ss_pred             cccCCC-CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc----
Q 013823          203 INLEHP-STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR----  277 (436)
Q Consensus       203 ~~~~~~-~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r----  277 (436)
                      +..+.| ..|+||+|++..|+.+.+.+..+++.|..|..-..|| ||+|||||||||||.||+|+|.+.+..++..    
T Consensus       123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD  201 (439)
T KOG0739|consen  123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD  201 (439)
T ss_pred             hhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH
Confidence            344444 5899999999999999999999999999998654555 8999999999999999999999998222111    


Q ss_pred             ---------------------cCCCC----------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcC
Q 013823          278 ---------------------QNDGA----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE  320 (436)
Q Consensus       278 ---------------------~~~~~----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~  320 (436)
                                           ...++                +....++++...||-.|.|+..+ .++++|+++||-||
T Consensus       202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d-~~gvLVLgATNiPw  280 (439)
T KOG0739|consen  202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGND-NDGVLVLGATNIPW  280 (439)
T ss_pred             HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccC-CCceEEEecCCCch
Confidence                                 11111                11234566777899999998643 56799999999999


Q ss_pred             CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCc-HHHHHhhhhcC-CCCHHHHH
Q 013823          321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSL-FGEIEGLIQST-DVTPAEVA  382 (436)
Q Consensus       321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~-~~~i~~l~~~~-~~tpaei~  382 (436)
                      .||.|++|  ||+..|++|+|...+|..+++.+++..  .|.+ ..++..|...+ +++++||.
T Consensus       281 ~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~t--p~~LT~~d~~eL~~kTeGySGsDis  340 (439)
T KOG0739|consen  281 VLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDT--PHVLTEQDFKELARKTEGYSGSDIS  340 (439)
T ss_pred             hHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCC--ccccchhhHHHHHhhcCCCCcCceE
Confidence            99999999  999999999999999999999999987  4544 56778887765 48888874

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=5.4e-24  Score=203.23  Aligned_cols=175  Identities=25%  Similarity=0.313  Sum_probs=137.5

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc-----------
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR-----------  277 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r-----------  277 (436)
                      .+|+.+.|+-++..++++.++.++.+++.+.++|+.+|.|+|||||||||||.+|+++|..+++.+...           
T Consensus       129 ~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiG  208 (388)
T KOG0651|consen  129 ISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIG  208 (388)
T ss_pred             cCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcc
Confidence            379999999999999999999999999999999999999999999999999999999999999332111           


Q ss_pred             --------------cCCCC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc
Q 013823          278 --------------QNDGA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP  324 (436)
Q Consensus       278 --------------~~~~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~  324 (436)
                                    ...+|                   ..+..-++++..|++.|||+...  ..+-+|+|||+|+.|||
T Consensus       209 EsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l--~rVk~ImatNrpdtLdp  286 (388)
T KOG0651|consen  209 ESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTL--HRVKTIMATNRPDTLDP  286 (388)
T ss_pred             cHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhc--ccccEEEecCCccccch
Confidence                          00011                   11223456788899999999765  45889999999999999


Q ss_pred             cccCCCceeEEEEcCCCCHHHHHHHHHHHhcccC-CCCCcHHHHHhhhhcCCCCHHHHHHHHhc
Q 013823          325 ALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKG-KSHSLFGEIEGLIQSTDVTPAEVAEELMK  387 (436)
Q Consensus       325 AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~-~~~~~~~~i~~l~~~~~~tpaei~~~l~~  387 (436)
                      ||+||||+|+.+++|.|+...|..|.+.+-..-. -....++.+.++.+  ++.++++...|..
T Consensus       287 aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d--~f~gad~rn~~tE  348 (388)
T KOG0651|consen  287 ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVD--GFNGADLRNVCTE  348 (388)
T ss_pred             hhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHh--ccChHHHhhhccc
Confidence            9999999999999999999998886654422110 02233555655554  4788888887753

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.87  E-value=1.3e-22  Score=219.41  Aligned_cols=175  Identities=25%  Similarity=0.350  Sum_probs=137.4

Q ss_pred             CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccC-------
Q 013823          207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN-------  279 (436)
Q Consensus       207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~-------  279 (436)
                      ...+|+++.|.+..++.+.+.+. ++..+..|...|...++|+||+||||||||++++++|++++.++...+.       
T Consensus       147 ~~~~~~di~g~~~~~~~l~~i~~-~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~  225 (644)
T PRK10733        147 IKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF  225 (644)
T ss_pred             hhCcHHHHcCHHHHHHHHHHHHH-HhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence            34679999999999999977554 6777888888998999999999999999999999999998843221110       


Q ss_pred             ------------------CCC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCC
Q 013823          280 ------------------DGA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERI  322 (436)
Q Consensus       280 ------------------~~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~l  322 (436)
                                        .++                   ........+++.||..||++...  +.++||+|||+|+.|
T Consensus       226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~--~~vivIaaTN~p~~l  303 (644)
T PRK10733        226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN--EGIIVIAATNRPDVL  303 (644)
T ss_pred             hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC--CCeeEEEecCChhhc
Confidence                              000                   00112234778899999999764  459999999999999


Q ss_pred             CccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          323 DPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       323 D~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      |+|++||||||++|++++|+.++|.+|++.++....  .....++..++..+ ++|+|||.+.+.
T Consensus       304 D~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~--l~~~~d~~~la~~t~G~sgadl~~l~~  366 (644)
T PRK10733        304 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARGTPGFSGADLANLVN  366 (644)
T ss_pred             CHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCC--CCCcCCHHHHHhhCCCCCHHHHHHHHH
Confidence            999999999999999999999999999999997652  22223445566544 699999998874

>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=3.6e-22  Score=217.48  Aligned_cols=179  Identities=22%  Similarity=0.254  Sum_probs=144.0

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc-----chhhcccC
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS-----VEMKDRQN  279 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~-----~~~~~r~~  279 (436)
                      ...-..|++|+|.+..++++++.+..++.+++.|..+++.+|||+|||||||||||++|+|+|..+.     +.++.|..
T Consensus       258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg  337 (1080)
T KOG0732|consen  258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG  337 (1080)
T ss_pred             hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence            3445689999999999999999999999999999999999999999999999999999999999886     33333333


Q ss_pred             CCC------------------------------CC-----------CCCcceeecceeecccCcccCCCCeEEEEEecCC
Q 013823          280 DGA------------------------------SV-----------GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH  318 (436)
Q Consensus       280 ~~~------------------------------~~-----------~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~  318 (436)
                      .++                              ..           ......+++.||..|||+.+.  .+++||++||+
T Consensus       338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsR--gqVvvigATnR  415 (1080)
T KOG0732|consen  338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSR--GQVVVIGATNR  415 (1080)
T ss_pred             chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCC--CceEEEcccCC
Confidence            322                              00           112345778899999999876  45999999999


Q ss_pred             cCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhc-CCCCHHHHHHHHh
Q 013823          319 KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM  386 (436)
Q Consensus       319 ~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~-~~~tpaei~~~l~  386 (436)
                      |+.+|||++||||||+.++||+|+.++|..|+...-.... ......-+..|+.. .++-+|++...|.
T Consensus       416 pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~-~~i~~~l~~~la~~t~gy~gaDlkaLCT  483 (1080)
T KOG0732|consen  416 PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWE-PPISRELLLWLAEETSGYGGADLKALCT  483 (1080)
T ss_pred             ccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCC-CCCCHHHHHHHHHhccccchHHHHHHHH
Confidence            9999999999999999999999999999999988765542 33333444455554 3588888877663

>CHL00206 ycf2 Ycf2; Provisional

Probab=99.85  E-value=1.5e-21  Score=220.86  Aligned_cols=170  Identities=18%  Similarity=0.200  Sum_probs=119.6

Q ss_pred             hHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccC----------------------------------
Q 013823          234 RKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN----------------------------------  279 (436)
Q Consensus       234 ~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~----------------------------------  279 (436)
                      ++..+.++|..+|+|+||+||||||||+||+|+|++.++++.....                                  
T Consensus      1618 ~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206       1618 GKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred             CcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence            4566788999999999999999999999999999999944321100                                  


Q ss_pred             ----------------------------------CCC----------CCCCCcceeecceeecccCcccC-CCCeEEEEE
Q 013823          280 ----------------------------------DGA----------SVGSNTKLTLSGILNFIDGLWSS-CGDERIIVF  314 (436)
Q Consensus       280 ----------------------------------~~~----------~~~~~~~~~~s~LL~~ldg~~~~-~~~~~ivI~  314 (436)
                                                        ++|          ........+++.|+++|||.... ...+++||+
T Consensus      1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIA 1777 (2281)
T CHL00206       1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIA 1777 (2281)
T ss_pred             chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEE
Confidence                                              000          00111123478889999987432 235699999


Q ss_pred             ecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCC-CCCcHHHHHhhhhcC-CCCHHHHHHHHh------
Q 013823          315 TTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGK-SHSLFGEIEGLIQST-DVTPAEVAEELM------  386 (436)
Q Consensus       315 TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~-~~~~~~~i~~l~~~~-~~tpaei~~~l~------  386 (436)
                      |||+|+.|||||+||||||++|+++.|+..+|++++...+...+- ......++..++..+ ++|+|||+..|-      
T Consensus      1778 ATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliA 1857 (2281)
T CHL00206       1778 STHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSIS 1857 (2281)
T ss_pred             eCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999887755422210 111123455666654 699999998763      


Q ss_pred             --c------cCCHHHHHHHHHHHHH
Q 013823          387 --K------ADDADVALEGLVNFLK  403 (436)
Q Consensus       387 --~------~~~~~~al~~l~~~l~  403 (436)
                        +      ..+.+.|+...+..++
T Consensus      1858 irq~ks~Id~~~I~~Al~Rq~~g~~ 1882 (2281)
T CHL00206       1858 ITQKKSIIDTNTIRSALHRQTWDLR 1882 (2281)
T ss_pred             HHcCCCccCHHHHHHHHHHHHhhhh
Confidence              1      1245666666665554

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=1.3e-21  Score=197.64  Aligned_cols=180  Identities=22%  Similarity=0.321  Sum_probs=128.4

Q ss_pred             cCCCCCCccc--ccChhH-HHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc----------
Q 013823          205 LEHPSTFDTL--AMDPEL-KQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS----------  271 (436)
Q Consensus       205 ~~~~~~~~~i--~g~~~~-k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~----------  271 (436)
                      ..+.-.|+++  +|.+.- -.-.+.....-+.-|+.-.++|++.-+|+|||||||||||.+|+.|...|+          
T Consensus       212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGP  291 (744)
T KOG0741|consen  212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGP  291 (744)
T ss_pred             cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcH
Confidence            3444468875  344333 333333334344468999999999999999999999999999999999998          


Q ss_pred             -----------------------------------------chhhcccCCC-CCCCCCcceeecceeecccCcccCCCCe
Q 013823          272 -----------------------------------------VEMKDRQNDG-ASVGSNTKLTLSGILNFIDGLWSSCGDE  309 (436)
Q Consensus       272 -----------------------------------------~~~~~r~~~~-~~~~~~~~~~~s~LL~~ldg~~~~~~~~  309 (436)
                                                               ++..-++..+ .+..+.....+++||.-|||+..-  ++
T Consensus       292 eIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL--NN  369 (744)
T KOG0741|consen  292 EILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL--NN  369 (744)
T ss_pred             HHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh--hc
Confidence                                                     1111111111 122344556789999999999875  45


Q ss_pred             EEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCC--CCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          310 RIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKS--HSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       310 ~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~--~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      ++||+.||+++.||+||+||||+..++++.+||.+.|.+|++.+-..-...  .....++++|+..+ +||+|||...+.
T Consensus       370 ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk  449 (744)
T KOG0741|consen  370 ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK  449 (744)
T ss_pred             EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH
Confidence            999999999999999999999999999999999999999988765432111  11123344444433 599999977664

>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=1.5e-21  Score=196.93  Aligned_cols=178  Identities=20%  Similarity=0.190  Sum_probs=147.5

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC---
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA---  282 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~---  282 (436)
                      ..+..|++++|++..|+.+.+.+..++..++.|..+. ++.+|+||.||||||||+|++|||.+.++.++.....+.   
T Consensus       147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK  225 (428)
T KOG0740|consen  147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK  225 (428)
T ss_pred             CCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence            3447899999999999999999999999999998763 566899999999999999999999999944433322111   


Q ss_pred             --------------------------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc
Q 013823          283 --------------------------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP  324 (436)
Q Consensus       283 --------------------------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~  324 (436)
                                                            .....+.+....+|..+++..+...+.++||+|||.|+.+|.
T Consensus       226 ~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~De  305 (428)
T KOG0740|consen  226 YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDE  305 (428)
T ss_pred             ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHH
Confidence                                                  223345566778888899998888889999999999999999


Q ss_pred             cccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHhc
Q 013823          325 ALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELMK  387 (436)
Q Consensus       325 AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~~  387 (436)
                      |++|  ||...+++|.|++++|..+|.+++...+ ......+++.+++.+ +|+..+|.+.|..
T Consensus       306 a~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~-~~l~~~d~~~l~~~Tegysgsdi~~l~ke  366 (428)
T KOG0740|consen  306 AARR--RFVKRLYIPLPDYETRSLLWKQLLKEQP-NGLSDLDISLLAKVTEGYSGSDITALCKE  366 (428)
T ss_pred             HHHH--HhhceeeecCCCHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCcccccHHHHHHH
Confidence            9999  9999999999999999999999998762 333457888888765 4999999998863

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=99.84  E-value=1.2e-20  Score=186.56  Aligned_cols=162  Identities=15%  Similarity=0.109  Sum_probs=109.0

Q ss_pred             CCCCCCcccccC-hhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc-------
Q 013823          206 EHPSTFDTLAMD-PELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR-------  277 (436)
Q Consensus       206 ~~~~~~~~i~g~-~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r-------  277 (436)
                      ....+|+++.|. --.+..+...+. .+ .+.+....|+.+|++++||||||||||++|+++|+++|+.+...       
T Consensus       109 ~~~~~f~~~~g~~~~~p~f~dk~~~-hi-~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~s  186 (413)
T PLN00020        109 QRTRSFDNLVGGYYIAPAFMDKVAV-HI-AKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELES  186 (413)
T ss_pred             hhhcchhhhcCccccCHHHHHHHHH-HH-HhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhc
Confidence            334567777333 223333222222 11 23444557889999999999999999999999999999222100       


Q ss_pred             -----------------------cCCCC--------------CC-C-CC-cceeecceeecccCc--------c--cCCC
Q 013823          278 -----------------------QNDGA--------------SV-G-SN-TKLTLSGILNFIDGL--------W--SSCG  307 (436)
Q Consensus       278 -----------------------~~~~~--------------~~-~-~~-~~~~~s~LL~~ldg~--------~--~~~~  307 (436)
                                             ...++              .. . .. .+....+||+.+|+.        |  ....
T Consensus       187 k~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~  266 (413)
T PLN00020        187 ENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEI  266 (413)
T ss_pred             CcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccC
Confidence                                   01111              00 0 11 122236788888763        3  1223


Q ss_pred             CeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC
Q 013823          308 DERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST  374 (436)
Q Consensus       308 ~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~  374 (436)
                      ..++||+|||+|+.|||||+||||||..+  ..|+.++|..|++.++...   .....++..|+...
T Consensus       267 ~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~---~l~~~dv~~Lv~~f  328 (413)
T PLN00020        267 PRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDD---GVSREDVVKLVDTF  328 (413)
T ss_pred             CCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccC---CCCHHHHHHHHHcC
Confidence            56899999999999999999999999965  5899999999999998764   33357888887754

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.84  E-value=1.3e-20  Score=207.30  Aligned_cols=176  Identities=25%  Similarity=0.331  Sum_probs=137.5

Q ss_pred             CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccC-------
Q 013823          207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN-------  279 (436)
Q Consensus       207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~-------  279 (436)
                      +..+|++|+|.+++++.|.+.+..++.+++.|..+|+.+++|+|||||||||||+++++||++++..+.....       
T Consensus       173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~  252 (733)
T TIGR01243       173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY  252 (733)
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence            4468999999999999999999999999999999999999999999999999999999999998833221100       


Q ss_pred             ------------------CCC----------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCcc
Q 013823          280 ------------------DGA----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPA  325 (436)
Q Consensus       280 ------------------~~~----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~A  325 (436)
                                        .++                ..+.......+.|++.||++...  ..++||+|||+++.||++
T Consensus       253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~--~~vivI~atn~~~~ld~a  330 (733)
T TIGR01243       253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR--GRVIVIGATNRPDALDPA  330 (733)
T ss_pred             ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC--CCEEEEeecCChhhcCHH
Confidence                              000                00111234567788899988654  458899999999999999


Q ss_pred             ccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhc-CCCCHHHHHHHHh
Q 013823          326 LLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM  386 (436)
Q Consensus       326 llRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~-~~~tpaei~~~l~  386 (436)
                      ++||||||..|+++.|+.++|..|++.+.....  .....++..++.. .+++++++...+.
T Consensus       331 l~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~--l~~d~~l~~la~~t~G~~gadl~~l~~  390 (733)
T TIGR01243       331 LRRPGRFDREIVIRVPDKRARKEILKVHTRNMP--LAEDVDLDKLAEVTHGFVGADLAALAK  390 (733)
T ss_pred             HhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC--CccccCHHHHHHhCCCCCHHHHHHHHH
Confidence            999999999999999999999999998775432  1112234445543 3599999887653

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=1.4e-19  Score=187.97  Aligned_cols=174  Identities=24%  Similarity=0.302  Sum_probs=144.2

Q ss_pred             CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccC-------
Q 013823          207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN-------  279 (436)
Q Consensus       207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~-------  279 (436)
                      ++.+ ++++|...+...+.+.+..++..+..+...|.++|+|+|+|||||||||.+++|+|++.++.++....       
T Consensus       180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~  258 (693)
T KOG0730|consen  180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF  258 (693)
T ss_pred             cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence            6667 89999999999999999999999999999999999999999999999999999999999933321110       


Q ss_pred             ------------------C-CC--------------C-CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCcc
Q 013823          280 ------------------D-GA--------------S-VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPA  325 (436)
Q Consensus       280 ------------------~-~~--------------~-~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~A  325 (436)
                                        . +.              . ......++.++|+..+||+.+.  .++||++|||+|+.|||+
T Consensus       259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~--~~vivl~atnrp~sld~a  336 (693)
T KOG0730|consen  259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPD--AKVIVLAATNRPDSLDPA  336 (693)
T ss_pred             ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCc--CcEEEEEecCCccccChh
Confidence                              0 00              0 0112567788999999999754  459999999999999999


Q ss_pred             ccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhc-CCCCHHHHHHHHh
Q 013823          326 LLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM  386 (436)
Q Consensus       326 llRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~-~~~tpaei~~~l~  386 (436)
                      +.| ||||..++++.|+..+|..|++.+....  ......++..++.. .++++||+...|.
T Consensus       337 lRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~--~~~~~~~l~~iA~~thGyvGaDL~~l~~  395 (693)
T KOG0730|consen  337 LRR-GRFDREVEIGIPGSDGRLDILRVLTKKM--NLLSDVDLEDIAVSTHGYVGADLAALCR  395 (693)
T ss_pred             hhc-CCCcceeeecCCCchhHHHHHHHHHHhc--CCcchhhHHHHHHHccchhHHHHHHHHH
Confidence            999 9999999999999999999999998776  33344566666654 5799999999886

>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=6.8e-18  Score=166.49  Aligned_cols=198  Identities=19%  Similarity=0.183  Sum_probs=136.0

Q ss_pred             ecccchhhHHhhhhHHHHHHHHHHHhcceEEEEeecCCCCCCCCCCCCCCCCccccccCCCCCCcccccChhHHHHHHHH
Q 013823          148 FHKKHKQTVICYYLPHVVERAKEIKQEEKVVKLYNRECPYDDDDDGGGGGGMWGSINLEHPSTFDTLAMDPELKQMILDD  227 (436)
Q Consensus       148 f~~~~~~~vl~~yl~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~g~~~~k~~i~~~  227 (436)
                      +.++.-.+|.++|+..++.+...+++..+..--|+..-.  .   ..+.-..-.........+|++|++.+.++..|...
T Consensus       296 YTtkeg~~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls--~---~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~l  370 (630)
T KOG0742|consen  296 YTTKEGTLVTWRYIERRLGQPSLIRESSRGRFPWIGSLS--A---LKHPIQGSRSASSRGKDPLEGVILHPSLEKRIEDL  370 (630)
T ss_pred             eeccccchhHHHHHHHHcCCchhhhhhccccCCCcccHH--H---HhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHHH
Confidence            456777889999999999999988887775544443210  0   00000001122334456799999999999998664


Q ss_pred             HHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC---CC---------CCCcceeecce
Q 013823          228 LDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA---SV---------GSNTKLTLSGI  295 (436)
Q Consensus       228 l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~---~~---------~~~~~~~~s~L  295 (436)
                      ... -.+    .+....+-|.+|||||||||||++|+-||...|++..-....+.   +.         -+..+..-.+|
T Consensus       371 A~a-TaN----TK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGL  445 (630)
T KOG0742|consen  371 AIA-TAN----TKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGL  445 (630)
T ss_pred             HHH-hcc----cccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccce
Confidence            332 222    12234566899999999999999999999999966543332222   10         01233344566


Q ss_pred             eecccCcc--------------------------cCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHH
Q 013823          296 LNFIDGLW--------------------------SSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVL  349 (436)
Q Consensus       296 L~~ldg~~--------------------------~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i  349 (436)
                      |-|||...                          .....+++++++||+|..+|-|+-.  |||..|+||+|..++|..|
T Consensus       446 llFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkl  523 (630)
T KOG0742|consen  446 LLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKL  523 (630)
T ss_pred             EEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHH
Confidence            66666421                          1112458899999999999999999  9999999999999999999


Q ss_pred             HHHHhccc
Q 013823          350 ASNYLGIK  357 (436)
Q Consensus       350 ~~~~l~~~  357 (436)
                      +..||...
T Consensus       524 l~lYlnky  531 (630)
T KOG0742|consen  524 LNLYLNKY  531 (630)
T ss_pred             HHHHHHHH
Confidence            99998653

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=9.3e-17  Score=154.65  Aligned_cols=153  Identities=27%  Similarity=0.356  Sum_probs=116.7

Q ss_pred             CccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhC-CCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc-
Q 013823          199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD-  276 (436)
Q Consensus       199 ~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g-~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~-  276 (436)
                      .|.....+-.--|+.++.+..+|+.+..+....+.-.+....-. +.|.|-+|||||||||||+|++|+|+.+.+...+ 
T Consensus       129 ~w~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~  208 (423)
T KOG0744|consen  129 HWYLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDR  208 (423)
T ss_pred             heeccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCc
Confidence            45543334444688899999999999998876665333222222 5677889999999999999999999988711111 


Q ss_pred             ---------------------------------------------------------c-cCCCCCCCCCcceeecceeec
Q 013823          277 ---------------------------------------------------------R-QNDGASVGSNTKLTLSGILNF  298 (436)
Q Consensus       277 ---------------------------------------------------------r-~~~~~~~~~~~~~~~s~LL~~  298 (436)
                                                                               | .........+.-+.++.||..
T Consensus       209 y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQ  288 (423)
T KOG0744|consen  209 YYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQ  288 (423)
T ss_pred             cccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHH
Confidence                                                                     1 111112234556788999999


Q ss_pred             ccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823          299 IDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG  355 (436)
Q Consensus       299 ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~  355 (436)
                      ||.+...  .++++++|+|-.+.||.||..  |-|.+.++++|+.+++..|++..+.
T Consensus       289 lDrlK~~--~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilkscie  341 (423)
T KOG0744|consen  289 LDRLKRY--PNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIE  341 (423)
T ss_pred             HHHhccC--CCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHH
Confidence            9999876  459999999999999999999  9999999999999999999988764

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.52  E-value=5.9e-14  Score=131.00  Aligned_cols=172  Identities=17%  Similarity=0.171  Sum_probs=99.9

Q ss_pred             ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCC
Q 013823          204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGAS  283 (436)
Q Consensus       204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~  283 (436)
                      ..-.|.+|++++|++++++.+.-.+.......        ....++||||||||||||||+.||++++..+...+.....
T Consensus        16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~--------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~   87 (233)
T PF05496_consen   16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKRG--------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE   87 (233)
T ss_dssp             HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT--------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred             HhcCCCCHHHccCcHHHHhhhHHHHHHHHhcC--------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence            35678999999999999998765554332211        2235799999999999999999999999766544332111


Q ss_pred             ----------------------CCCCcceeecceeecccCcc-----cCCC---------CeEEEEEecCCcCCCCcccc
Q 013823          284 ----------------------VGSNTKLTLSGILNFIDGLW-----SSCG---------DERIIVFTTNHKERIDPALL  327 (436)
Q Consensus       284 ----------------------~~~~~~~~~s~LL~~ldg~~-----~~~~---------~~~ivI~TTN~~~~lD~All  327 (436)
                                            .+..++..-..|+..|+...     ..+.         ...-+|++|++...|.++|+
T Consensus        88 k~~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLr  167 (233)
T PF05496_consen   88 KAGDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLR  167 (233)
T ss_dssp             SCHHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCC
T ss_pred             hHHHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHH
Confidence                                  01111111122333332211     0000         12468899999999999999


Q ss_pred             CCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHHHHHHHh
Q 013823          328 RPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEELM  386 (436)
Q Consensus       328 RpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpaei~~~l~  386 (436)
                      .  ||....++.+.+.++...|+.+.-...+ -....+....++....-||.-....+.
T Consensus       168 d--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~-i~i~~~~~~~Ia~rsrGtPRiAnrll~  223 (233)
T PF05496_consen  168 D--RFGIVLRLEFYSEEELAKIVKRSARILN-IEIDEDAAEEIARRSRGTPRIANRLLR  223 (233)
T ss_dssp             T--TSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHHHHHH
T ss_pred             h--hcceecchhcCCHHHHHHHHHHHHHHhC-CCcCHHHHHHHHHhcCCChHHHHHHHH
Confidence            9  9999999999999999999987655542 122233344555556667665544443

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>CHL00181 cbbX CbbX; Provisional

Probab=99.48  E-value=9.3e-14  Score=136.53  Aligned_cols=139  Identities=19%  Similarity=0.272  Sum_probs=93.9

Q ss_pred             cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcc-e--eeEeCCCCCChhHHHHHHHHHhcc-------hhhcccC--
Q 013823          212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKR-G--YLLYGPPGTGKSSLIAAMANYLSV-------EMKDRQN--  279 (436)
Q Consensus       212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~r-g--~LL~GPpGtGKT~la~aiA~~l~~-------~~~~r~~--  279 (436)
                      ++++|.+++|++|.+.+.. +.....+...|...+. |  +||+||||||||++|+++|..+..       .+.....  
T Consensus        23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~  101 (287)
T CHL00181         23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD  101 (287)
T ss_pred             HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence            4799999999999987654 5556677778876553 3  899999999999999999987630       0000000  


Q ss_pred             --------------------CCC-----CC---------CCCcceeecceeecccCcccCCCCeEEEEEecCCcC-----
Q 013823          280 --------------------DGA-----SV---------GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE-----  320 (436)
Q Consensus       280 --------------------~~~-----~~---------~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~-----  320 (436)
                                          .+.     +.         ..........|+..|+..    .++++||++++...     
T Consensus       102 l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~~~~~~~  177 (287)
T CHL00181        102 LVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ----RDDLVVIFAGYKDRMDKFY  177 (287)
T ss_pred             HHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHHHHHHH
Confidence                                000     00         001122233344445432    23467777775322     


Q ss_pred             CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      .++|+|.+  ||+.+|+|+.++.+++..|+..++...
T Consensus       178 ~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~  212 (287)
T CHL00181        178 ESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQ  212 (287)
T ss_pred             hcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence            34699999  999999999999999999999998764

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=99.45  E-value=4.2e-14  Score=121.57  Aligned_cols=90  Identities=38%  Similarity=0.585  Sum_probs=64.4

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcchhhcccCC--------------------------CC----------------CCCC
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVEMKDRQND--------------------------GA----------------SVGS  286 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~--------------------------~~----------------~~~~  286 (436)
                      +|||||||||||++|+++|+.++.++......                          ++                ....
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~   80 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS   80 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence            68999999999999999999999332111100                          00                0001


Q ss_pred             CcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCC
Q 013823          287 NTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSY  340 (436)
Q Consensus       287 ~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~  340 (436)
                      .....++.|++.++..... +.+++||+|||.++.+|++++| |||+..|++|.
T Consensus        81 ~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~  132 (132)
T PF00004_consen   81 FEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL  132 (132)
T ss_dssp             HHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred             ccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence            1233456677777777543 3458999999999999999998 89999999974

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.44  E-value=3.4e-13  Score=135.21  Aligned_cols=169  Identities=16%  Similarity=0.180  Sum_probs=108.5

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCC-
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASV-  284 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~-  284 (436)
                      -.|.+|++++|.++.++.+...+......        ...+.++|||||||||||++|+++|++++..+.......... 
T Consensus        19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~   90 (328)
T PRK00080         19 LRPKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKP   90 (328)
T ss_pred             cCcCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccCh
Confidence            45789999999999999987766532211        234578999999999999999999999985443221111000 


Q ss_pred             ---------------------CCCcceeecceeecccCcc-----cC---------CCCeEEEEEecCCcCCCCccccCC
Q 013823          285 ---------------------GSNTKLTLSGILNFIDGLW-----SS---------CGDERIIVFTTNHKERIDPALLRP  329 (436)
Q Consensus       285 ---------------------~~~~~~~~s~LL~~ldg~~-----~~---------~~~~~ivI~TTN~~~~lD~AllRp  329 (436)
                                           +.........|.+.|+...     ..         .-....+|++||++..+++++.+ 
T Consensus        91 ~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s-  169 (328)
T PRK00080         91 GDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD-  169 (328)
T ss_pred             HHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH-
Confidence                                 0000001111222222110     00         00126789999999999999988 


Q ss_pred             CceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHHHHHHH
Q 013823          330 GRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEEL  385 (436)
Q Consensus       330 GR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpaei~~~l  385 (436)
                       ||...++|+.++.+++..++.+.....+ .....+.+..++....-+|..+...+
T Consensus       170 -Rf~~~~~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~ia~~~~G~pR~a~~~l  223 (328)
T PRK00080        170 -RFGIVQRLEFYTVEELEKIVKRSARILG-VEIDEEGALEIARRSRGTPRIANRLL  223 (328)
T ss_pred             -hcCeeeecCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHcCCCchHHHHHH
Confidence             9999999999999999999998876643 22233445555555555555444443

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=99.44  E-value=3.5e-13  Score=130.83  Aligned_cols=140  Identities=16%  Similarity=0.248  Sum_probs=90.5

Q ss_pred             CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCc---ceeeEeCCCCCChhHHHHHHHHHhcc-------hhhc----
Q 013823          211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWK---RGYLLYGPPGTGKSSLIAAMANYLSV-------EMKD----  276 (436)
Q Consensus       211 ~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~---rg~LL~GPpGtGKT~la~aiA~~l~~-------~~~~----  276 (436)
                      +++++|.+++|+.|.+.+...... ....+.|...+   .++||+||||||||++|+++|+.+..       .+..    
T Consensus         5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~   83 (261)
T TIGR02881         5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA   83 (261)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence            678999999999999877655433 44455665433   46899999999999999999987630       0000    


Q ss_pred             -------------------ccCCCC----CCC--------CCcceeecceeecccCcccCCCCeEEEEEecCCcC-----
Q 013823          277 -------------------RQNDGA----SVG--------SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE-----  320 (436)
Q Consensus       277 -------------------r~~~~~----~~~--------~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~-----  320 (436)
                                         +.....    +.+        ......+..|++.|+...    ..+++|++++..+     
T Consensus        84 ~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~----~~~~vila~~~~~~~~~~  159 (261)
T TIGR02881        84 DLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR----NEFVLILAGYSDEMDYFL  159 (261)
T ss_pred             HhhhhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccC----CCEEEEecCCcchhHHHH
Confidence                               000000    000        000112233444444331    2355666554322     


Q ss_pred             CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      .++|++.+  ||+.+|+||.++.+++..|+++++...
T Consensus       160 ~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~  194 (261)
T TIGR02881       160 SLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKER  194 (261)
T ss_pred             hcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHc
Confidence            37889999  999999999999999999999998654

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.42  E-value=6e-13  Score=131.76  Aligned_cols=161  Identities=16%  Similarity=0.162  Sum_probs=101.6

Q ss_pred             CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCC-----
Q 013823          210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASV-----  284 (436)
Q Consensus       210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~-----  284 (436)
                      +|++++|.+++++.|...+......        ...+.+++||||||||||++|+++|++++..+..........     
T Consensus         2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~   73 (305)
T TIGR00635         2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLA   73 (305)
T ss_pred             CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHH
Confidence            6899999999999987766533221        123467999999999999999999999985542221110000     


Q ss_pred             -----------------CCCcceeecceeecccCccc--------------CCCCeEEEEEecCCcCCCCccccCCCcee
Q 013823          285 -----------------GSNTKLTLSGILNFIDGLWS--------------SCGDERIIVFTTNHKERIDPALLRPGRMD  333 (436)
Q Consensus       285 -----------------~~~~~~~~s~LL~~ldg~~~--------------~~~~~~ivI~TTN~~~~lD~AllRpGR~d  333 (436)
                                       +.........|++.++....              ..-....+|++||++..+++++++  ||.
T Consensus        74 ~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~  151 (305)
T TIGR00635        74 AILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFG  151 (305)
T ss_pred             HHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcc
Confidence                             00000111112222221110              001236788999999999999999  999


Q ss_pred             EEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHHH
Q 013823          334 VHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEV  381 (436)
Q Consensus       334 ~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpaei  381 (436)
                      ..+.++.++.++...+++...+..+ .....+.+..++....-.|..+
T Consensus       152 ~~~~l~~l~~~e~~~il~~~~~~~~-~~~~~~al~~ia~~~~G~pR~~  198 (305)
T TIGR00635       152 IILRLEFYTVEELAEIVSRSAGLLN-VEIEPEAALEIARRSRGTPRIA  198 (305)
T ss_pred             eEEEeCCCCHHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHhCCCcchH
Confidence            9999999999999999988776442 2223334444554444344333

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=99.42  E-value=3.7e-13  Score=132.24  Aligned_cols=140  Identities=19%  Similarity=0.266  Sum_probs=95.6

Q ss_pred             Cc-ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCC---cceeeEeCCCCCChhHHHHHHHHHhcc-------hhhcccC
Q 013823          211 FD-TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAW---KRGYLLYGPPGTGKSSLIAAMANYLSV-------EMKDRQN  279 (436)
Q Consensus       211 ~~-~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~---~rg~LL~GPpGtGKT~la~aiA~~l~~-------~~~~r~~  279 (436)
                      ++ .++|.+++|++|.+.+.. +..+..+.+.|+..   ..++||+||||||||++|+++|..+..       .+.....
T Consensus        20 l~~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~   98 (284)
T TIGR02880        20 LDRELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR   98 (284)
T ss_pred             HHHhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence            44 699999999999886664 66777788888764   347999999999999999999987741       0100000


Q ss_pred             C----------------------CC-----CCC---------CCcceeecceeecccCcccCCCCeEEEEEecCC--cC-
Q 013823          280 D----------------------GA-----SVG---------SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH--KE-  320 (436)
Q Consensus       280 ~----------------------~~-----~~~---------~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~--~~-  320 (436)
                      .                      ++     +.+         .........|++.|+..    ..+++||++++.  .+ 
T Consensus        99 ~~l~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~~~~  174 (284)
T TIGR02880        99 DDLVGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ----RDDLVVILAGYKDRMDS  174 (284)
T ss_pred             HHHhHhhcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHHHHH
Confidence            0                      00     000         00111223344444432    234677777653  23 


Q ss_pred             --CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          321 --RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       321 --~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                        .++|+|.+  ||+.+|+||.++.+++..|+.+++...
T Consensus       175 ~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~  211 (284)
T TIGR02880       175 FFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQ  211 (284)
T ss_pred             HHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence              25899999  999999999999999999999998764

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=2.5e-12  Score=135.59  Aligned_cols=176  Identities=23%  Similarity=0.209  Sum_probs=111.1

Q ss_pred             cccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCC---------
Q 013823          214 LAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASV---------  284 (436)
Q Consensus       214 i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~---------  284 (436)
                      =.|.+++|+.|.+++.-....+       .-...-+||+||||+|||||+++||..+|-.++.-+..+..+         
T Consensus       325 HYGLekVKeRIlEyLAV~~l~~-------~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRR  397 (782)
T COG0466         325 HYGLEKVKERILEYLAVQKLTK-------KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRR  397 (782)
T ss_pred             ccCchhHHHHHHHHHHHHHHhc-------cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccc
Confidence            3588899999999886322211       111223779999999999999999999995555443332210         


Q ss_pred             ---CCCcce-----------eecceeecccCcccCCC------------------------------CeEEEEEecCCcC
Q 013823          285 ---GSNTKL-----------TLSGILNFIDGLWSSCG------------------------------DERIIVFTTNHKE  320 (436)
Q Consensus       285 ---~~~~~~-----------~~s~LL~~ldg~~~~~~------------------------------~~~ivI~TTN~~~  320 (436)
                         +....+           .---||.++|.+.++..                              .+|++|+|+|..+
T Consensus       398 TYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~  477 (782)
T COG0466         398 TYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD  477 (782)
T ss_pred             cccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccc
Confidence               111111           01125666665543321                              2589999999999


Q ss_pred             CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHH--hhhh-cCCCCHHHHHHHHhccCCHHHHHHH
Q 013823          321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIE--GLIQ-STDVTPAEVAEELMKADDADVALEG  397 (436)
Q Consensus       321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~--~l~~-~~~~tpaei~~~l~~~~~~~~al~~  397 (436)
                      .+|.+|+.  || ..|+++-.+.++...|+++||=-.        .++  .|-. ...++..-|.. ++++-..++.+++
T Consensus       478 tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk--------~~~~~gL~~~el~i~d~ai~~-iI~~YTREAGVR~  545 (782)
T COG0466         478 TIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPK--------QLKEHGLKKGELTITDEAIKD-IIRYYTREAGVRN  545 (782)
T ss_pred             cCChHHhc--ce-eeeeecCCChHHHHHHHHHhcchH--------HHHHcCCCccceeecHHHHHH-HHHHHhHhhhhhH
Confidence            99999999  99 578999999999999999997321        111  1111 22355555433 3344445555666


Q ss_pred             HHHHHHHHHHH
Q 013823          398 LVNFLKRKRIQ  408 (436)
Q Consensus       398 l~~~l~~~~~~  408 (436)
                      |...+....++
T Consensus       546 LeR~i~ki~RK  556 (782)
T COG0466         546 LEREIAKICRK  556 (782)
T ss_pred             HHHHHHHHHHH
Confidence            66655554443

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=99.38  E-value=2.4e-12  Score=121.72  Aligned_cols=151  Identities=19%  Similarity=0.291  Sum_probs=112.4

Q ss_pred             CCccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch---h
Q 013823          198 GMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE---M  274 (436)
Q Consensus       198 ~~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~---~  274 (436)
                      +...++....|..+++|+|.+.+|+.|.+....|+...         +...+||+|++|||||++++|+.+++...   +
T Consensus        13 ~~l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~---------pannvLL~G~rGtGKSSlVkall~~y~~~GLRl   83 (249)
T PF05673_consen   13 GYLEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQGL---------PANNVLLWGARGTGKSSLVKALLNEYADQGLRL   83 (249)
T ss_pred             CcEEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCC---------CCcceEEecCCCCCHHHHHHHHHHHHhhcCceE
Confidence            45677777888899999999999999999999888632         45789999999999999999999988710   0


Q ss_pred             hcc----------------cCCC-----CC--CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccc-----
Q 013823          275 KDR----------------QNDG-----AS--VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPAL-----  326 (436)
Q Consensus       275 ~~r----------------~~~~-----~~--~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~Al-----  326 (436)
                      ...                ....     +.  .-.........|-..|||-....+++++|.+|+|+...+++.+     
T Consensus        84 Iev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~  163 (249)
T PF05673_consen   84 IEVSKEDLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDRED  163 (249)
T ss_pred             EEECHHHhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccC
Confidence            000                0000     00  0112223346677788887777788999999999866554322     


Q ss_pred             -----cCC-----------CceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          327 -----LRP-----------GRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       327 -----lRp-----------GR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                           +.|           .||..+|.|..|+.++...|.++++...
T Consensus       164 ~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~  210 (249)
T PF05673_consen  164 IQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERY  210 (249)
T ss_pred             CCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHc
Confidence                 112           2999999999999999999999999765

>TIGR00763 lon ATP-dependent protease La

Probab=99.37  E-value=2.9e-12  Score=142.03  Aligned_cols=135  Identities=30%  Similarity=0.256  Sum_probs=89.2

Q ss_pred             Cc-ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC-------
Q 013823          211 FD-TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA-------  282 (436)
Q Consensus       211 ~~-~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~-------  282 (436)
                      |+ ++.|++++|+.|.+++.....       .+...+..+||+||||||||++|++||+.++..+......+.       
T Consensus       318 l~~~~~G~~~~k~~i~~~~~~~~~-------~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~  390 (775)
T TIGR00763       318 LDEDHYGLKKVKERILEYLAVQKL-------RGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIR  390 (775)
T ss_pred             hhhhcCChHHHHHHHHHHHHHHHh-------hcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHc
Confidence            44 488999999999887664321       122233479999999999999999999999844332211100       


Q ss_pred             -----CCCCC-----------cceeecceeecccCcccCC------------------------------CCeEEEEEec
Q 013823          283 -----SVGSN-----------TKLTLSGILNFIDGLWSSC------------------------------GDERIIVFTT  316 (436)
Q Consensus       283 -----~~~~~-----------~~~~~s~LL~~ldg~~~~~------------------------------~~~~ivI~TT  316 (436)
                           ..+..           ....---|++++|.+.+..                              -.++++|+||
T Consensus       391 g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~Tt  470 (775)
T TIGR00763       391 GHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATA  470 (775)
T ss_pred             CCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEec
Confidence                 00000           0000001333333332100                              0257899999


Q ss_pred             CCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823          317 NHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG  355 (436)
Q Consensus       317 N~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~  355 (436)
                      |.++.+|++|++  ||+ .|+|+.|+.+++..|+++|+.
T Consensus       471 N~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~  506 (775)
T TIGR00763       471 NSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLI  506 (775)
T ss_pred             CCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHH
Confidence            999999999999  996 789999999999999999873

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=99.34  E-value=2.9e-12  Score=122.25  Aligned_cols=165  Identities=17%  Similarity=0.196  Sum_probs=107.6

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCC-
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGAS-  283 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~-  283 (436)
                      .-.|..|++.+|++++|+.+.-++.....+.        ...-.+|||||||.||||||+.||+++|+.+...+..... 
T Consensus        19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK   90 (332)
T COG2255          19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK   90 (332)
T ss_pred             ccCcccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC
Confidence            3468899999999999999877665433222        2335799999999999999999999999655433322110 


Q ss_pred             ---------------------CCCCcceeecceeecccCcc--------cCCC------CeEEEEEecCCcCCCCccccC
Q 013823          284 ---------------------VGSNTKLTLSGILNFIDGLW--------SSCG------DERIIVFTTNHKERIDPALLR  328 (436)
Q Consensus       284 ---------------------~~~~~~~~~s~LL~~ldg~~--------~~~~------~~~ivI~TTN~~~~lD~AllR  328 (436)
                                           .+.-+..+-.-|.-.|+.+.        .+..      ...-+|++|.+...|...|..
T Consensus        91 ~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd  170 (332)
T COG2255          91 PGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD  170 (332)
T ss_pred             hhhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHH
Confidence                                 00111111112222333221        0000      124688999999999999998


Q ss_pred             CCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHH
Q 013823          329 PGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAE  380 (436)
Q Consensus       329 pGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpae  380 (436)
                        ||....++.+.+.++...|+.+.-...+ -....+...+++..+.-||.-
T Consensus       171 --RFGi~~rlefY~~~eL~~Iv~r~a~~l~-i~i~~~~a~eIA~rSRGTPRI  219 (332)
T COG2255         171 --RFGIIQRLEFYTVEELEEIVKRSAKILG-IEIDEEAALEIARRSRGTPRI  219 (332)
T ss_pred             --hcCCeeeeecCCHHHHHHHHHHHHHHhC-CCCChHHHHHHHHhccCCcHH
Confidence              9999999999999999999988755432 222233444555555566643

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.33  E-value=4.7e-12  Score=132.32  Aligned_cols=133  Identities=19%  Similarity=0.345  Sum_probs=87.7

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch-----------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE-----------  273 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~-----------  273 (436)
                      .-+|.+|++++|++.+++.|...+.    .        ...+.++|||||||||||++|+++|+.++..           
T Consensus         7 kyRP~~~~divGq~~i~~~L~~~i~----~--------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c   74 (472)
T PRK14962          7 KYRPKTFSEVVGQDHVKKLIINALK----K--------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC   74 (472)
T ss_pred             HHCCCCHHHccCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence            4578999999999999887765443    1        1245679999999999999999999998732           


Q ss_pred             -------------hhcccCCC-CCCC---------------CC------------cceeecceeecccCcccCCCCeEEE
Q 013823          274 -------------MKDRQNDG-ASVG---------------SN------------TKLTLSGILNFIDGLWSSCGDERII  312 (436)
Q Consensus       274 -------------~~~r~~~~-~~~~---------------~~------------~~~~~s~LL~~ldg~~~~~~~~~iv  312 (436)
                                   +....... .+.+               +.            .....+.|+..++.    .+..+++
T Consensus        75 ~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~----p~~~vv~  150 (472)
T PRK14962         75 RACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE----PPSHVVF  150 (472)
T ss_pred             HHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh----CCCcEEE
Confidence                         11111100 0000               00            00011223333332    2244777


Q ss_pred             EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                      |++||.+..+++++.+  |+ ..++|..++.++...+++.....
T Consensus       151 Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~  191 (472)
T PRK14962        151 VLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEA  191 (472)
T ss_pred             EEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHH
Confidence            7787788899999999  88 47999999999987777776543

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.31  E-value=7e-12  Score=129.71  Aligned_cols=134  Identities=16%  Similarity=0.266  Sum_probs=90.6

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh----------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM----------  274 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~----------  274 (436)
                      ...|.+|++|+|++.+.+.|...+..           | ..+..+||+||||||||++|+++|+.++...          
T Consensus        11 KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~-ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C   78 (484)
T PRK14956         11 KYRPQFFRDVIHQDLAIGALQNALKS-----------G-KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC   78 (484)
T ss_pred             HhCCCCHHHHhChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence            56789999999999999887665541           1 2345699999999999999999999987421          


Q ss_pred             --------------hcccCCC-CC---------------------------CCCCcceeecceeecccCcccCCCCeEEE
Q 013823          275 --------------KDRQNDG-AS---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERII  312 (436)
Q Consensus       275 --------------~~r~~~~-~~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~iv  312 (436)
                                    ....... .+                           .+..+....+.||..|+.    ....+++
T Consensus        79 ~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE----Pp~~viF  154 (484)
T PRK14956         79 TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE----PPAHIVF  154 (484)
T ss_pred             cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc----CCCceEE
Confidence                          0000000 00                           000011122233333332    2345888


Q ss_pred             EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      |++|+.++.|.+++++  |+ .++.|..++.++....+++.+...
T Consensus       155 ILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~E  196 (484)
T PRK14956        155 ILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIE  196 (484)
T ss_pred             EeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHc
Confidence            9999999999999999  98 568898888888777777766544

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.31  E-value=1e-11  Score=126.19  Aligned_cols=134  Identities=15%  Similarity=0.215  Sum_probs=89.1

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc--------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD--------  276 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~--------  276 (436)
                      ...|.+|++|+|++.+++.+...+..           | ..+..+||+||||||||++|+++|+.++.....        
T Consensus         9 kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c   76 (363)
T PRK14961          9 KWRPQYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC   76 (363)
T ss_pred             HhCCCchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence            34689999999999999988665541           1 245679999999999999999999998622100        


Q ss_pred             ----------------ccCCC-CC----------------C-----------CCCcceeecceeecccCcccCCCCeEEE
Q 013823          277 ----------------RQNDG-AS----------------V-----------GSNTKLTLSGILNFIDGLWSSCGDERII  312 (436)
Q Consensus       277 ----------------r~~~~-~~----------------~-----------~~~~~~~~s~LL~~ldg~~~~~~~~~iv  312 (436)
                                      ..... ..                .           +.......+.||..++..    ...+.+
T Consensus        77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~----~~~~~f  152 (363)
T PRK14961         77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEP----PQHIKF  152 (363)
T ss_pred             HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcC----CCCeEE
Confidence                            00000 00                0           000000112233333321    234677


Q ss_pred             EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      |++|+.++.+.+++..  |+ ..++|+.++.++....+...+...
T Consensus       153 Il~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~  194 (363)
T PRK14961        153 ILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKE  194 (363)
T ss_pred             EEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHc
Confidence            8888888999999987  88 678999999999888888766554

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=2e-11  Score=128.32  Aligned_cols=133  Identities=24%  Similarity=0.262  Sum_probs=89.5

Q ss_pred             ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCC--------
Q 013823          213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASV--------  284 (436)
Q Consensus       213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~--------  284 (436)
                      |=.|.+++|+.|.+++.--.       -.|-..+.-++|+||||.|||+++++||..||-.++.-+..+..+        
T Consensus       412 DHYgm~dVKeRILEfiAV~k-------Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR  484 (906)
T KOG2004|consen  412 DHYGMEDVKERILEFIAVGK-------LRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR  484 (906)
T ss_pred             cccchHHHHHHHHHHHHHHh-------hcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence            45688899999998775211       112233445889999999999999999999995544332222100        


Q ss_pred             ----CCCccee-----------ecceeecccCcccCC-C-----------------------------CeEEEEEecCCc
Q 013823          285 ----GSNTKLT-----------LSGILNFIDGLWSSC-G-----------------------------DERIIVFTTNHK  319 (436)
Q Consensus       285 ----~~~~~~~-----------~s~LL~~ldg~~~~~-~-----------------------------~~~ivI~TTN~~  319 (436)
                          +....+.           ---|+.++|.+.+.. |                             ..+++|+|+|..
T Consensus       485 RTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~i  564 (906)
T KOG2004|consen  485 RTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVI  564 (906)
T ss_pred             eeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEecccc
Confidence                0000000           001334444332110 0                             258999999999


Q ss_pred             CCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823          320 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG  355 (436)
Q Consensus       320 ~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~  355 (436)
                      +.|+++|+.  ||. .|+++-...++...|+++||-
T Consensus       565 dtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi  597 (906)
T KOG2004|consen  565 DTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI  597 (906)
T ss_pred             ccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence            999999999  994 789999999999999999984

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=99.29  E-value=1.2e-11  Score=132.90  Aligned_cols=138  Identities=18%  Similarity=0.238  Sum_probs=91.7

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh---------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK---------  275 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~---------  275 (436)
                      ..+|.+|++|+|++.+++.|...+.            +...+..||||||+|||||++++++|+.++....         
T Consensus         9 KYRPqtFdEVIGQe~Vv~~L~~aL~------------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C   76 (830)
T PRK07003          9 KWRPKDFASLVGQEHVVRALTHALD------------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC   76 (830)
T ss_pred             HhCCCcHHHHcCcHHHHHHHHHHHh------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence            4568999999999999998877654            1134567999999999999999999999874211         


Q ss_pred             ---------------cccCCCC-CCC------------CCcceeecceeecccCcc-----------cCCCCeEEEEEec
Q 013823          276 ---------------DRQNDGA-SVG------------SNTKLTLSGILNFIDGLW-----------SSCGDERIIVFTT  316 (436)
Q Consensus       276 ---------------~r~~~~~-~~~------------~~~~~~~s~LL~~ldg~~-----------~~~~~~~ivI~TT  316 (436)
                                     ..+.... ..+            .......-.++.+.+.+.           ......+++|++|
T Consensus        77 ~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaT  156 (830)
T PRK07003         77 RACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILAT  156 (830)
T ss_pred             HHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence                           0000000 000            000000001222222221           1112358899999


Q ss_pred             CCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          317 NHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       317 N~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      |.+++|.+.+++  |+ .++.|..++.++....++..+..+
T Consensus       157 td~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~E  194 (830)
T PRK07003        157 TDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEE  194 (830)
T ss_pred             CChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHc
Confidence            999999999999  99 789999999999888888777554

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.28  E-value=6.5e-12  Score=133.22  Aligned_cols=134  Identities=18%  Similarity=0.270  Sum_probs=93.0

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh----------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM----------  274 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~----------  274 (436)
                      ..+|.+|++|+|++.+++.|.+.+..            ...+..+||+||+|||||++|+++|+.++..-          
T Consensus         9 KYRPqtFddVIGQe~vv~~L~~al~~------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~   76 (700)
T PRK12323          9 KWRPRDFTTLVGQEHVVRALTHALEQ------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ   76 (700)
T ss_pred             HhCCCcHHHHcCcHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence            45789999999999999988776651            12456799999999999999999999997521          


Q ss_pred             -------------------hcccCCC-CC---------------------------CCCCcceeecceeecccCcccCCC
Q 013823          275 -------------------KDRQNDG-AS---------------------------VGSNTKLTLSGILNFIDGLWSSCG  307 (436)
Q Consensus       275 -------------------~~r~~~~-~~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~  307 (436)
                                         ....... ..                           .+..+....+.||..|+.    ..
T Consensus        77 PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE----PP  152 (700)
T PRK12323         77 PCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE----PP  152 (700)
T ss_pred             CCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc----CC
Confidence                               0000000 00                           000011122223333333    23


Q ss_pred             CeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          308 DERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       308 ~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      ..+++|++||.++.|.+.+++  |+ .++.|..++.++....+...+...
T Consensus       153 ~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~E  199 (700)
T PRK12323        153 EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEE  199 (700)
T ss_pred             CCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHc
Confidence            457899999999999999999  98 788999999999888887776544

>PRK04195 replication factor C large subunit; Provisional

Probab=99.28  E-value=3.6e-11  Score=126.69  Aligned_cols=143  Identities=23%  Similarity=0.303  Sum_probs=95.6

Q ss_pred             ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCC
Q 013823          204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGAS  283 (436)
Q Consensus       204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~  283 (436)
                      ....|.+|++|+|+++.++.+.+.+..+..        |. +++++|||||||||||++|+++|++++.++......+..
T Consensus         6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~-~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r   76 (482)
T PRK04195          6 EKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GK-PKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR   76 (482)
T ss_pred             hhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CC-CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc
Confidence            356789999999999999999888875542        22 268899999999999999999999998544333222110


Q ss_pred             --------------CCCCc-ceeecceeecccCcccCC-------------CCeEEEEEecCCcCCCCccccCCCceeEE
Q 013823          284 --------------VGSNT-KLTLSGILNFIDGLWSSC-------------GDERIIVFTTNHKERIDPALLRPGRMDVH  335 (436)
Q Consensus       284 --------------~~~~~-~~~~s~LL~~ldg~~~~~-------------~~~~ivI~TTN~~~~lD~AllRpGR~d~~  335 (436)
                                    ..... ....--++...|++....             .....+|+++|.+..+++.-+|  +....
T Consensus        77 ~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lr--sr~~~  154 (482)
T PRK04195         77 TADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELR--NACLM  154 (482)
T ss_pred             cHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHh--ccceE
Confidence                          00000 000112444445443210             1124577889999988873344  33468


Q ss_pred             EEcCCCCHHHHHHHHHHHhccc
Q 013823          336 INMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       336 I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      |+|+.|+..+...++...+...
T Consensus       155 I~f~~~~~~~i~~~L~~i~~~e  176 (482)
T PRK04195        155 IEFKRLSTRSIVPVLKRICRKE  176 (482)
T ss_pred             EEecCCCHHHHHHHHHHHHHHc
Confidence            9999999999988888877554

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.28  E-value=1.1e-11  Score=129.42  Aligned_cols=134  Identities=13%  Similarity=0.186  Sum_probs=91.4

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh----------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM----------  274 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~----------  274 (436)
                      ...|.+|++|+|++.+++.+...+.            ....+.++||+||||||||++|+++|+.++...          
T Consensus         6 KyRP~~f~dliGQe~vv~~L~~a~~------------~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C   73 (491)
T PRK14964          6 KYRPSSFKDLVGQDVLVRILRNAFT------------LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC   73 (491)
T ss_pred             HhCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence            4568999999999999987765443            113467899999999999999999999875211          


Q ss_pred             --------------hcccCCCC----------------------------CCCCCcceeecceeecccCcccCCCCeEEE
Q 013823          275 --------------KDRQNDGA----------------------------SVGSNTKLTLSGILNFIDGLWSSCGDERII  312 (436)
Q Consensus       275 --------------~~r~~~~~----------------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~iv  312 (436)
                                    ...+..+.                            +.+..+....+.||..|+.-    .+.+++
T Consensus        74 ~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP----p~~v~f  149 (491)
T PRK14964         74 HNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEP----APHVKF  149 (491)
T ss_pred             HHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCC----CCCeEE
Confidence                          11111000                            00001111233344455443    244788


Q ss_pred             EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      |++|+.++.+.+.+++  |+ ..++|..++.++....+...+...
T Consensus       150 Ilatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~E  191 (491)
T PRK14964        150 ILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKE  191 (491)
T ss_pred             EEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHc
Confidence            8888999999999998  88 678999999998887777766554

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.27  E-value=1.1e-11  Score=131.80  Aligned_cols=134  Identities=15%  Similarity=0.273  Sum_probs=90.4

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh----------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM----------  274 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~----------  274 (436)
                      ..+|.+|++|+|++.+++.|...+.            ....+.+|||+||||||||++|+++|+.++..-          
T Consensus         8 KyRPktFddVIGQe~vv~~L~~aI~------------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C   75 (702)
T PRK14960          8 KYRPRNFNELVGQNHVSRALSSALE------------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC   75 (702)
T ss_pred             HhCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence            4568999999999999998877654            123457899999999999999999999987321          


Q ss_pred             --------------hcccCCCC-C---------------------------CCCCcceeecceeecccCcccCCCCeEEE
Q 013823          275 --------------KDRQNDGA-S---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERII  312 (436)
Q Consensus       275 --------------~~r~~~~~-~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~iv  312 (436)
                                    ........ .                           .+..+....+.||..|+..    .+.+.+
T Consensus        76 ~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP----P~~v~F  151 (702)
T PRK14960         76 ATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP----PEHVKF  151 (702)
T ss_pred             HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC----CCCcEE
Confidence                          00000000 0                           0000011112233333321    244778


Q ss_pred             EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      |++||.+..+++.+++  |+ .+++|..++.++....+...+...
T Consensus       152 ILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kE  193 (702)
T PRK14960        152 LFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKE  193 (702)
T ss_pred             EEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHc
Confidence            8888989999999887  88 688999999999888887776654

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=99.24  E-value=3e-11  Score=126.88  Aligned_cols=134  Identities=17%  Similarity=0.218  Sum_probs=90.9

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccC---CC
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN---DG  281 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~---~~  281 (436)
                      ..+|.+|++++|++.+.+.+...+.            ....+.++||+||||||||++|+++|+.++........   ..
T Consensus        14 kyRP~~f~dliGq~~vv~~L~~ai~------------~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~   81 (507)
T PRK06645         14 KYRPSNFAELQGQEVLVKVLSYTIL------------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT   81 (507)
T ss_pred             hhCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence            5678999999999999987766443            11345789999999999999999999999742210000   00


Q ss_pred             C------------------------CC-----------------------------CCCcceeecceeecccCcccCCCC
Q 013823          282 A------------------------SV-----------------------------GSNTKLTLSGILNFIDGLWSSCGD  308 (436)
Q Consensus       282 ~------------------------~~-----------------------------~~~~~~~~s~LL~~ldg~~~~~~~  308 (436)
                      |                        ..                             +..+....+.|+..|+.    ...
T Consensus        82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe----pp~  157 (507)
T PRK06645         82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE----PPP  157 (507)
T ss_pred             CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh----cCC
Confidence            0                        00                             00000111223333332    234


Q ss_pred             eEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          309 ERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       309 ~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      .+++|++|+.++.+++++.+  |+ ..++|..++.++...++...+...
T Consensus       158 ~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~e  203 (507)
T PRK06645        158 HIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQE  203 (507)
T ss_pred             CEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHc
Confidence            57888888999999999998  88 678999999999888888777654

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=99.24  E-value=3.9e-11  Score=128.13  Aligned_cols=134  Identities=16%  Similarity=0.266  Sum_probs=90.9

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh---------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK---------  275 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~---------  275 (436)
                      ...|.+|++|+|++.+++.+...+..            ...+..||||||||||||++|+++|+.++..-.         
T Consensus         9 k~rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C   76 (559)
T PRK05563          9 KWRPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC   76 (559)
T ss_pred             HhCCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence            34689999999999999988776652            134578999999999999999999998862210         


Q ss_pred             ---------------cccCCC-CC---------------------------CCCCcceeecceeecccCcccCCCCeEEE
Q 013823          276 ---------------DRQNDG-AS---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERII  312 (436)
Q Consensus       276 ---------------~r~~~~-~~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~iv  312 (436)
                                     ...... ..                           .+.......+.||..++..    ...+++
T Consensus        77 ~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep----p~~~if  152 (559)
T PRK05563         77 EICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP----PAHVIF  152 (559)
T ss_pred             HHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC----CCCeEE
Confidence                           000000 00                           0000111122344444332    345788


Q ss_pred             EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      |++|+.++.+++.+++  |+. .++|+.|+.++....+...+...
T Consensus       153 Ilatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~e  194 (559)
T PRK05563        153 ILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKE  194 (559)
T ss_pred             EEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHc
Confidence            8888889999999998  884 68899999988877777766544

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.24  E-value=1.7e-11  Score=129.30  Aligned_cols=134  Identities=14%  Similarity=0.255  Sum_probs=89.8

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh---------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK---------  275 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~---------  275 (436)
                      ..+|.+|++|+|++.+++.|...+..            ...+..|||+||||||||++|+++|+.++..-.         
T Consensus         9 kyRP~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C   76 (509)
T PRK14958          9 KWRPRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC   76 (509)
T ss_pred             HHCCCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence            45689999999999999988776641            124567999999999999999999999973210         


Q ss_pred             ---------------cccCCCC-C---------------------------CCCCcceeecceeecccCcccCCCCeEEE
Q 013823          276 ---------------DRQNDGA-S---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERII  312 (436)
Q Consensus       276 ---------------~r~~~~~-~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~iv  312 (436)
                                     .....+. .                           .+..+....+.||..|+..    .+.+.+
T Consensus        77 ~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep----p~~~~f  152 (509)
T PRK14958         77 ENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP----PSHVKF  152 (509)
T ss_pred             HHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc----CCCeEE
Confidence                           0000000 0                           0000111222333333332    244778


Q ss_pred             EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      |++|+.+..+.+.+++  |+ ..++|..++.++....+.+.+...
T Consensus       153 Ilattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~e  194 (509)
T PRK14958        153 ILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEE  194 (509)
T ss_pred             EEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHc
Confidence            8888889999999888  88 677899888888776666666544

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=99.23  E-value=8.4e-11  Score=117.02  Aligned_cols=135  Identities=20%  Similarity=0.247  Sum_probs=90.3

Q ss_pred             CccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc
Q 013823          199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ  278 (436)
Q Consensus       199 ~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~  278 (436)
                      .|.  ....|.+|++++|+++.++.+...+.           .| ..+..+|||||||+|||++++++|++++.++....
T Consensus        10 ~w~--~kyrP~~~~~~~~~~~~~~~l~~~~~-----------~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~   75 (316)
T PHA02544         10 MWE--QKYRPSTIDECILPAADKETFKSIVK-----------KG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVN   75 (316)
T ss_pred             cce--eccCCCcHHHhcCcHHHHHHHHHHHh-----------cC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEec
Confidence            464  36778999999999999998877654           11 23456778999999999999999999874332211


Q ss_pred             CCCCCC-----------------CC-----------C-cceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCC
Q 013823          279 NDGASV-----------------GS-----------N-TKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRP  329 (436)
Q Consensus       279 ~~~~~~-----------------~~-----------~-~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRp  329 (436)
                      ......                 ..           . .......|.+.++..    .....+|+|||.+..+++++.+ 
T Consensus        76 ~~~~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~----~~~~~~Ilt~n~~~~l~~~l~s-  150 (316)
T PHA02544         76 GSDCRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY----SKNCSFIITANNKNGIIEPLRS-  150 (316)
T ss_pred             cCcccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhc----CCCceEEEEcCChhhchHHHHh-
Confidence            111000                 00           0 000011122223322    2346788999999999999999 


Q ss_pred             CceeEEEEcCCCCHHHHHHHHHHHh
Q 013823          330 GRMDVHINMSYCTVHGFKVLASNYL  354 (436)
Q Consensus       330 GR~d~~I~~~~p~~~~r~~i~~~~l  354 (436)
                       |+. .+.|+.|+.+++..++..++
T Consensus       151 -R~~-~i~~~~p~~~~~~~il~~~~  173 (316)
T PHA02544        151 -RCR-VIDFGVPTKEEQIEMMKQMI  173 (316)
T ss_pred             -hce-EEEeCCCCHHHHHHHHHHHH
Confidence             995 78999999999887766543

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.22  E-value=3.1e-11  Score=120.25  Aligned_cols=137  Identities=21%  Similarity=0.288  Sum_probs=86.1

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCC
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASV  284 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~  284 (436)
                      .-+|.+|++++|++.+...- .-+...+.         -..-.+++|||||||||||+|+.||+.++..+...+....+.
T Consensus        17 rmRP~~lde~vGQ~HLlg~~-~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gv   86 (436)
T COG2256          17 RLRPKSLDEVVGQEHLLGEG-KPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGV   86 (436)
T ss_pred             HhCCCCHHHhcChHhhhCCC-chHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccH
Confidence            45689999999998876431 11111111         122357999999999999999999999997766554433311


Q ss_pred             CC------Cccee---ecceeecccCccc---CC---------CCeEEEEEe-c-CCcCCCCccccCCCceeEEEEcCCC
Q 013823          285 GS------NTKLT---LSGILNFIDGLWS---SC---------GDERIIVFT-T-NHKERIDPALLRPGRMDVHINMSYC  341 (436)
Q Consensus       285 ~~------~~~~~---~s~LL~~ldg~~~---~~---------~~~~ivI~T-T-N~~~~lD~AllRpGR~d~~I~~~~p  341 (436)
                      .+      ..+..   -...+-++|.+..   ..         ...+++|++ | |..-.|.+||++  |. .+.++...
T Consensus        87 kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlS--R~-~vf~lk~L  163 (436)
T COG2256          87 KDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLS--RA-RVFELKPL  163 (436)
T ss_pred             HHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhh--hh-heeeeecC
Confidence            10      00000   0123334444321   10         123666664 4 444589999999  87 67788999


Q ss_pred             CHHHHHHHHHHHh
Q 013823          342 TVHGFKVLASNYL  354 (436)
Q Consensus       342 ~~~~r~~i~~~~l  354 (436)
                      +.++..+++.+-+
T Consensus       164 ~~~di~~~l~ra~  176 (436)
T COG2256         164 SSEDIKKLLKRAL  176 (436)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999998888843

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=99.21  E-value=3.8e-11  Score=115.71  Aligned_cols=130  Identities=26%  Similarity=0.314  Sum_probs=84.4

Q ss_pred             ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch-hh-cc----
Q 013823          204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE-MK-DR----  277 (436)
Q Consensus       204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~-~~-~r----  277 (436)
                      ....|.+|++++|++.+.+.+...+..             .---.||||||||||||+.|+++|.+++-+ +. .+    
T Consensus        28 eKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l   94 (346)
T KOG0989|consen   28 EKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL   94 (346)
T ss_pred             HHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh
Confidence            367799999999999999999887762             111359999999999999999999999831 10 00    


Q ss_pred             cCC---CC-------------------C---------------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcC
Q 013823          278 QND---GA-------------------S---------------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE  320 (436)
Q Consensus       278 ~~~---~~-------------------~---------------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~  320 (436)
                      ..+   +.                   .               .+......-+.|.+.||...    ....+|+.||+++
T Consensus        95 naSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s----~~trFiLIcnyls  170 (346)
T KOG0989|consen   95 NASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFS----RTTRFILICNYLS  170 (346)
T ss_pred             cccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccc----cceEEEEEcCChh
Confidence            000   00                   0               00111112233444555432    3378899999999


Q ss_pred             CCCccccCCCceeEEEEcCCCCHHHHHHHHHHH
Q 013823          321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNY  353 (436)
Q Consensus       321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~  353 (436)
                      .|++.+.+  |+. +..|+....+....-++..
T Consensus       171 rii~pi~S--RC~-KfrFk~L~d~~iv~rL~~I  200 (346)
T KOG0989|consen  171 RIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKI  200 (346)
T ss_pred             hCChHHHh--hHH-HhcCCCcchHHHHHHHHHH
Confidence            99999998  884 5567666555444444433

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.21  E-value=6.7e-11  Score=124.63  Aligned_cols=134  Identities=20%  Similarity=0.323  Sum_probs=89.5

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh----------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM----------  274 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~----------  274 (436)
                      ...|.+|++|+|++++++.|...+..            ...+..+|||||||||||++|+++|+.+...-          
T Consensus         7 KyRP~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~   74 (504)
T PRK14963          7 RARPITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE   74 (504)
T ss_pred             hhCCCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence            45689999999999999888776552            12446689999999999999999999886311          


Q ss_pred             -------------hcccCCCC-C---------------------------CCCCcceeecceeecccCcccCCCCeEEEE
Q 013823          275 -------------KDRQNDGA-S---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERIIV  313 (436)
Q Consensus       275 -------------~~r~~~~~-~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI  313 (436)
                                   ........ .                           .+.......+.|+..|+.    .....++|
T Consensus        75 sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe----p~~~t~~I  150 (504)
T PRK14963         75 SCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE----PPEHVIFI  150 (504)
T ss_pred             hhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh----CCCCEEEE
Confidence                         00000000 0                           000000111122222222    22457888


Q ss_pred             EecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          314 FTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       314 ~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      ++||.+..+++++.+  |+. +++|+.++.++....+...+...
T Consensus       151 l~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~e  191 (504)
T PRK14963        151 LATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAE  191 (504)
T ss_pred             EEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHc
Confidence            889999999999998  874 78999999999888888776554

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=99.21  E-value=6e-11  Score=127.36  Aligned_cols=134  Identities=16%  Similarity=0.276  Sum_probs=91.2

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh---------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK---------  275 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~---------  275 (436)
                      ..+|.+|++|+|++.+++.|...+..            ...+..|||+||||||||++|+++|+.++....         
T Consensus         9 KyRP~~f~divGQe~vv~~L~~~l~~------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C   76 (647)
T PRK07994          9 KWRPQTFAEVVGQEHVLTALANALDL------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC   76 (647)
T ss_pred             HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence            34689999999999999988765541            124567999999999999999999999874311         


Q ss_pred             ---------------cccCCC-CC---------------------------CCCCcceeecceeecccCcccCCCCeEEE
Q 013823          276 ---------------DRQNDG-AS---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERII  312 (436)
Q Consensus       276 ---------------~r~~~~-~~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~iv  312 (436)
                                     ...... ..                           .+..+....+.||..|+.    ..+.+++
T Consensus        77 ~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE----Pp~~v~F  152 (647)
T PRK07994         77 DNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE----PPEHVKF  152 (647)
T ss_pred             HHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc----CCCCeEE
Confidence                           000000 00                           000011112223333332    2244778


Q ss_pred             EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      |++|+.++.|.+.+++  |+ .+++|..++.++....+.+.+...
T Consensus       153 IL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e  194 (647)
T PRK07994        153 LLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAE  194 (647)
T ss_pred             EEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHc
Confidence            8888899999999998  97 889999999999888888776443

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=99.21  E-value=5.4e-11  Score=120.15  Aligned_cols=134  Identities=17%  Similarity=0.312  Sum_probs=90.5

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh---------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK---------  275 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~---------  275 (436)
                      ...|.+|++++|.+++++.+.+.+..           | ..+..+|||||||+|||++|+++|+.+.....         
T Consensus         7 ~~rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c   74 (355)
T TIGR02397         7 KYRPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC   74 (355)
T ss_pred             HhCCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence            45688999999999999988776541           1 24567999999999999999999998752210         


Q ss_pred             ---------------cccCCC-CC---------------CCC------------CcceeecceeecccCcccCCCCeEEE
Q 013823          276 ---------------DRQNDG-AS---------------VGS------------NTKLTLSGILNFIDGLWSSCGDERII  312 (436)
Q Consensus       276 ---------------~r~~~~-~~---------------~~~------------~~~~~~s~LL~~ldg~~~~~~~~~iv  312 (436)
                                     ...... ..               ..+            ......+.|+..++.    .....++
T Consensus        75 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~----~~~~~~l  150 (355)
T TIGR02397        75 ESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEE----PPEHVVF  150 (355)
T ss_pred             HHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhC----CccceeE
Confidence                           000000 00               000            000111223333332    2345778


Q ss_pred             EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      |++||.++.+.+++.+  |+ ..++|+.|+.++...++..++...
T Consensus       151 Il~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~  192 (355)
T TIGR02397       151 ILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKE  192 (355)
T ss_pred             EEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHc
Confidence            8889999999999988  88 578999999999888888877654

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.20  E-value=5.9e-11  Score=129.70  Aligned_cols=134  Identities=17%  Similarity=0.279  Sum_probs=90.0

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc--------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD--------  276 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~--------  276 (436)
                      ..+|.+|++|+|++.+++.|...+.    .        ...+..|||+||||||||++|+++|+.++.....        
T Consensus         9 KyRP~tFddIIGQe~Iv~~LknaI~----~--------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C   76 (944)
T PRK14949          9 KWRPATFEQMVGQSHVLHALTNALT----Q--------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC   76 (944)
T ss_pred             HhCCCCHHHhcCcHHHHHHHHHHHH----h--------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence            4568999999999999988766544    1        1245678999999999999999999999743110        


Q ss_pred             ----------------ccCCC-CC---------------------------CCCCcceeecceeecccCcccCCCCeEEE
Q 013823          277 ----------------RQNDG-AS---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERII  312 (436)
Q Consensus       277 ----------------r~~~~-~~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~iv  312 (436)
                                      ..... ..                           .+.......+.||..|+.-    ...+++
T Consensus        77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEP----P~~vrF  152 (944)
T PRK14949         77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEP----PEHVKF  152 (944)
T ss_pred             hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcc----CCCeEE
Confidence                            00000 00                           0000111122233333321    234677


Q ss_pred             EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      |++|+.+..|.+.+++  |+ .++.|..++.++....+.+.+...
T Consensus       153 ILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~E  194 (944)
T PRK14949        153 LLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQE  194 (944)
T ss_pred             EEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHc
Confidence            7888889999999998  88 789999999999888888776543

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=99.20  E-value=6.1e-11  Score=128.14  Aligned_cols=134  Identities=21%  Similarity=0.292  Sum_probs=91.8

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc--------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD--------  276 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~--------  276 (436)
                      ..+|.+|++|+|++.+++.+...+..            ...+.+||||||||||||++|+++|..+...-..        
T Consensus        11 KyRP~~f~dIiGQe~~v~~L~~aI~~------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~   78 (725)
T PRK07133         11 KYRPKTFDDIVGQDHIVQTLKNIIKS------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE   78 (725)
T ss_pred             HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence            56789999999999999988776651            1345789999999999999999999988642110        


Q ss_pred             -------------ccCCC-CC---------------------------CCCCcceeecceeecccCcccCCCCeEEEEEe
Q 013823          277 -------------RQNDG-AS---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFT  315 (436)
Q Consensus       277 -------------r~~~~-~~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~T  315 (436)
                                   ....+ ..                           .+.......+.||..|+..    ++.+++|++
T Consensus        79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEP----P~~tifILa  154 (725)
T PRK07133         79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEP----PKHVIFILA  154 (725)
T ss_pred             HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcC----CCceEEEEE
Confidence                         00000 00                           0000011122344444432    345788888


Q ss_pred             cCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          316 TNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       316 TN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      |+.++.|.+++++  |+ .+++|..++.++....+...+...
T Consensus       155 Tte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~ke  193 (725)
T PRK07133        155 TTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKE  193 (725)
T ss_pred             cCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHc
Confidence            8999999999998  88 589999999998877777665443

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=99.20  E-value=3.4e-11  Score=129.04  Aligned_cols=134  Identities=17%  Similarity=0.275  Sum_probs=91.3

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc--------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD--------  276 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~--------  276 (436)
                      ..+|.+|++|+|++.+++.|...+..            ...+.+|||+||||||||++|+++|+.++..-..        
T Consensus         9 KYRP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C   76 (709)
T PRK08691          9 KWRPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC   76 (709)
T ss_pred             HhCCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence            45689999999999999988776651            1345789999999999999999999988632110        


Q ss_pred             ----------------ccCCC-CCC---------------------------CCCcceeecceeecccCcccCCCCeEEE
Q 013823          277 ----------------RQNDG-ASV---------------------------GSNTKLTLSGILNFIDGLWSSCGDERII  312 (436)
Q Consensus       277 ----------------r~~~~-~~~---------------------------~~~~~~~~s~LL~~ldg~~~~~~~~~iv  312 (436)
                                      ..... ...                           +..+....+.||..|+..    .+.+.+
T Consensus        77 ~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP----p~~v~f  152 (709)
T PRK08691         77 QSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP----PEHVKF  152 (709)
T ss_pred             HHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC----CCCcEE
Confidence                            00000 000                           000001112233333321    234788


Q ss_pred             EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      |++||.+..+.+.+++  |+ ..+.|+.++.++....+.+.+...
T Consensus       153 ILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kE  194 (709)
T PRK08691        153 ILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSE  194 (709)
T ss_pred             EEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHc
Confidence            8899999999999887  88 678889999999888888777655

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=99.20  E-value=4.6e-11  Score=126.75  Aligned_cols=134  Identities=14%  Similarity=0.271  Sum_probs=89.7

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh----------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM----------  274 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~----------  274 (436)
                      ..+|.+|++++|++.+++.+...+.            ....+.++||+||||||||++|+++|+.+...-          
T Consensus         9 KyRP~~F~dIIGQe~iv~~L~~aI~------------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C   76 (605)
T PRK05896          9 KYRPHNFKQIIGQELIKKILVNAIL------------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC   76 (605)
T ss_pred             HhCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence            4578999999999999988876553            113457899999999999999999999886210          


Q ss_pred             --------------hcccCCC-CCCC---------------CC------------cceeecceeecccCcccCCCCeEEE
Q 013823          275 --------------KDRQNDG-ASVG---------------SN------------TKLTLSGILNFIDGLWSSCGDERII  312 (436)
Q Consensus       275 --------------~~r~~~~-~~~~---------------~~------------~~~~~s~LL~~ldg~~~~~~~~~iv  312 (436)
                                    ....... ...+               ..            .....+.||..|+..    ++..++
T Consensus        77 ~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP----p~~tvf  152 (605)
T PRK05896         77 SVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEP----PKHVVF  152 (605)
T ss_pred             HHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhC----CCcEEE
Confidence                          0000000 0000               00            000112233333332    245788


Q ss_pred             EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      |++|+.+..|.+++++  |+. .++|+.++.++....+...+...
T Consensus       153 IL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~ke  194 (605)
T PRK05896        153 IFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKE  194 (605)
T ss_pred             EEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHc
Confidence            8888899999999998  884 78999999998887777766543

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.19  E-value=7.5e-11  Score=125.79  Aligned_cols=134  Identities=19%  Similarity=0.312  Sum_probs=91.3

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc--------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD--------  276 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~--------  276 (436)
                      ...|.+|++|+|++.+++.|...+..           | ..+..||||||||||||++|+++|+.++..-..        
T Consensus         6 kyRP~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C   73 (584)
T PRK14952          6 KYRPATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC   73 (584)
T ss_pred             HhCCCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence            45689999999999999988776541           1 244579999999999999999999988732100        


Q ss_pred             ------------------ccCCCC-C---------------------------CCCCcceeecceeecccCcccCCCCeE
Q 013823          277 ------------------RQNDGA-S---------------------------VGSNTKLTLSGILNFIDGLWSSCGDER  310 (436)
Q Consensus       277 ------------------r~~~~~-~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~  310 (436)
                                        ...... +                           .+..+....+.||..|+..    .+.+
T Consensus        74 ~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEp----p~~~  149 (584)
T PRK14952         74 ESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEP----PEHL  149 (584)
T ss_pred             HHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcC----CCCe
Confidence                              000000 0                           0000111222344444432    2458


Q ss_pred             EEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          311 IIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       311 ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      ++|++|+.++.|.+++++  |+ .+++|..++.++....+...+...
T Consensus       150 ~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~e  193 (584)
T PRK14952        150 IFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQE  193 (584)
T ss_pred             EEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHc
Confidence            888888999999999998  86 689999999988887777776654

>PLN03025 replication factor C subunit; Provisional

Probab=99.18  E-value=7.6e-11  Score=117.78  Aligned_cols=137  Identities=17%  Similarity=0.151  Sum_probs=87.2

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch-----hhcccC
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE-----MKDRQN  279 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~-----~~~r~~  279 (436)
                      ...|.+|++++|++++++.|...+.    .       + .. ..+|||||||||||++|+++|+++.-.     ......
T Consensus         6 kyrP~~l~~~~g~~~~~~~L~~~~~----~-------~-~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~   72 (319)
T PLN03025          6 KYRPTKLDDIVGNEDAVSRLQVIAR----D-------G-NM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA   72 (319)
T ss_pred             hcCCCCHHHhcCcHHHHHHHHHHHh----c-------C-CC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence            5689999999999998887765433    1       1 11 359999999999999999999987311     111110


Q ss_pred             CCCCC----------------CCCcceeecceeecccCccc-----------CCCCeEEEEEecCCcCCCCccccCCCce
Q 013823          280 DGASV----------------GSNTKLTLSGILNFIDGLWS-----------SCGDERIIVFTTNHKERIDPALLRPGRM  332 (436)
Q Consensus       280 ~~~~~----------------~~~~~~~~s~LL~~ldg~~~-----------~~~~~~ivI~TTN~~~~lD~AllRpGR~  332 (436)
                      .+...                ........--+++++|.+..           ..+....+|++||.+..+.+++.+  |+
T Consensus        73 sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S--Rc  150 (319)
T PLN03025         73 SDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS--RC  150 (319)
T ss_pred             cccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH--hh
Confidence            00000                00000001113344443321           112235678899999999999998  87


Q ss_pred             eEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          333 DVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       333 d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                       ..++|+.|+.++....+.......
T Consensus       151 -~~i~f~~l~~~~l~~~L~~i~~~e  174 (319)
T PLN03025        151 -AIVRFSRLSDQEILGRLMKVVEAE  174 (319)
T ss_pred             -hcccCCCCCHHHHHHHHHHHHHHc
Confidence             578999999999887777766544

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=99.17  E-value=9.3e-11  Score=129.56  Aligned_cols=135  Identities=16%  Similarity=0.227  Sum_probs=91.9

Q ss_pred             ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh--------
Q 013823          204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK--------  275 (436)
Q Consensus       204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~--------  275 (436)
                      ....|.+|++|+|++.+++.|...+..            ...+..||||||+|||||++|++||+.|+..-.        
T Consensus         7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~   74 (824)
T PRK07764          7 RRYRPATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE   74 (824)
T ss_pred             HHhCCCCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc
Confidence            356789999999999999988776541            123467999999999999999999999973210        


Q ss_pred             ------------------cccCCCC-C---------------------------CCCCcceeecceeecccCcccCCCCe
Q 013823          276 ------------------DRQNDGA-S---------------------------VGSNTKLTLSGILNFIDGLWSSCGDE  309 (436)
Q Consensus       276 ------------------~r~~~~~-~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~  309 (436)
                                        ....... .                           .+..+....+.||+.|+..    .+.
T Consensus        75 C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp----P~~  150 (824)
T PRK07764         75 CDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP----PEH  150 (824)
T ss_pred             cHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC----CCC
Confidence                              0000000 0                           0000111122344444443    245


Q ss_pred             EEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          310 RIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       310 ~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      +++|++|+.++.|-+.++.  |+ .+++|..++.++...++...+...
T Consensus       151 ~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~E  195 (824)
T PRK07764        151 LKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQE  195 (824)
T ss_pred             eEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHc
Confidence            7888888999999999988  87 688999999998888888776544

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.17  E-value=1.2e-10  Score=124.69  Aligned_cols=134  Identities=16%  Similarity=0.259  Sum_probs=89.4

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc--------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD--------  276 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~--------  276 (436)
                      ..+|.+|++|+|++.+++.|...+..            ...+..|||+||+|||||++|+++|+.++..-..        
T Consensus         9 KyRP~~f~dviGQe~vv~~L~~~l~~------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~   76 (618)
T PRK14951          9 KYRPRSFSEMVGQEHVVQALTNALTQ------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT   76 (618)
T ss_pred             HHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence            45689999999999999888775541            1245679999999999999999999998742110        


Q ss_pred             ---------------------ccCCCC-C---------------------------CCCCcceeecceeecccCcccCCC
Q 013823          277 ---------------------RQNDGA-S---------------------------VGSNTKLTLSGILNFIDGLWSSCG  307 (436)
Q Consensus       277 ---------------------r~~~~~-~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~  307 (436)
                                           .+.... .                           .+..+....+.||..|+.    ..
T Consensus        77 pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE----PP  152 (618)
T PRK14951         77 PCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEE----PP  152 (618)
T ss_pred             CCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhccc----CC
Confidence                                 000000 0                           000001111222322222    12


Q ss_pred             CeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          308 DERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       308 ~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      +.+++|++|+.+..+.+.+++  |+ .+++|..++.++....+...+...
T Consensus       153 ~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~e  199 (618)
T PRK14951        153 EYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAE  199 (618)
T ss_pred             CCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHc
Confidence            447788888889999999888  88 788999999998887777766544

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.17  E-value=6.6e-11  Score=125.57  Aligned_cols=134  Identities=17%  Similarity=0.267  Sum_probs=90.2

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc--------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD--------  276 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~--------  276 (436)
                      ..+|.+|++|+|++.+++.+...+..            ...+..|||+||||||||++|+++|+.++.+...        
T Consensus         9 k~rP~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C   76 (527)
T PRK14969          9 KWRPKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC   76 (527)
T ss_pred             HhCCCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence            34678999999999999988776541            1345679999999999999999999998742110        


Q ss_pred             ----------------ccCC-CC---------------------------CCCCCcceeecceeecccCcccCCCCeEEE
Q 013823          277 ----------------RQND-GA---------------------------SVGSNTKLTLSGILNFIDGLWSSCGDERII  312 (436)
Q Consensus       277 ----------------r~~~-~~---------------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~iv  312 (436)
                                      .... ..                           +.+..+....+.||..|+..    .+.+++
T Consensus        77 ~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEep----p~~~~f  152 (527)
T PRK14969         77 SACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP----PEHVKF  152 (527)
T ss_pred             HHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCC----CCCEEE
Confidence                            0000 00                           00000111122344444332    244778


Q ss_pred             EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      |++|+.++.+.+.+++  |+ ..++|..++.++....+...+...
T Consensus       153 IL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~e  194 (527)
T PRK14969        153 ILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQE  194 (527)
T ss_pred             EEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHc
Confidence            8888889999988887  87 788999999998887777766543

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=99.17  E-value=9.3e-11  Score=119.96  Aligned_cols=134  Identities=16%  Similarity=0.207  Sum_probs=89.8

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc------------
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD------------  276 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~------------  276 (436)
                      ..|++|+|++.+++.+...+.....   .+...+...+.++||+||||+|||++|+++|+.+..+...            
T Consensus         2 ~~f~~IiGq~~~~~~L~~~i~~~~~---~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~   78 (394)
T PRK07940          2 SVWDDLVGQEAVVAELRAAARAARA---DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT   78 (394)
T ss_pred             ChhhhccChHHHHHHHHHHHHhccc---cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence            3589999999999999888764332   2344455577899999999999999999999987533100            


Q ss_pred             -----------ccC--CCCC---------------------------CCCCcceeecceeecccCcccCCCCeEEEEEec
Q 013823          277 -----------RQN--DGAS---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTT  316 (436)
Q Consensus       277 -----------r~~--~~~~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TT  316 (436)
                                 ...  ....                           .+.......+.||..|+.-    .+..++|++|
T Consensus        79 ~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep----~~~~~fIL~a  154 (394)
T PRK07940         79 VLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP----PPRTVWLLCA  154 (394)
T ss_pred             HhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC----CCCCeEEEEE
Confidence                       000  0000                           0000111123344444432    2346677777


Q ss_pred             CCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHH
Q 013823          317 NHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASN  352 (436)
Q Consensus       317 N~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~  352 (436)
                      +.++.|.|++++  |+ ..|.|+.|+.++....+..
T Consensus       155 ~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~  187 (394)
T PRK07940        155 PSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVR  187 (394)
T ss_pred             CChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHH
Confidence            779999999999  88 7999999999987766653

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.16  E-value=7.2e-11  Score=126.63  Aligned_cols=134  Identities=15%  Similarity=0.228  Sum_probs=90.7

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh---------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK---------  275 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~---------  275 (436)
                      ...|.+|++|+|++++++.|...+..            ...+..||||||||||||++|+++|+.++..-.         
T Consensus         9 k~RP~~f~~iiGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c   76 (576)
T PRK14965          9 KYRPQTFSDLTGQEHVSRTLQNAIDT------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC   76 (576)
T ss_pred             HhCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence            45689999999999999988776541            134578999999999999999999999873210         


Q ss_pred             ---------------cccCCCC-C---------------------------CCCCcceeecceeecccCcccCCCCeEEE
Q 013823          276 ---------------DRQNDGA-S---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERII  312 (436)
Q Consensus       276 ---------------~r~~~~~-~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~iv  312 (436)
                                     ....... .                           .+..+....+.||..|+.-    .+.+++
T Consensus        77 ~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep----p~~~~f  152 (576)
T PRK14965         77 PPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP----PPHVKF  152 (576)
T ss_pred             HHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC----CCCeEE
Confidence                           0000000 0                           0000011122334444332    345888


Q ss_pred             EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      |++||.++.|.+.+++  |+ .+++|..++.++....+...+...
T Consensus       153 Il~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~e  194 (576)
T PRK14965        153 IFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQE  194 (576)
T ss_pred             EEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHh
Confidence            8999999999999998  87 588999999988777777665544

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.16  E-value=1.3e-10  Score=122.91  Aligned_cols=134  Identities=16%  Similarity=0.262  Sum_probs=88.8

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh---------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK---------  275 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~---------  275 (436)
                      ...|.+|++|+|++.+++.+...+..            ...+..+||+||||||||++|+++|+.++....         
T Consensus         9 KyRP~~f~diiGq~~~v~~L~~~i~~------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C   76 (546)
T PRK14957          9 KYRPQSFAEVAGQQHALNSLVHALET------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC   76 (546)
T ss_pred             HHCcCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence            45689999999999999887765541            123467999999999999999999998863110         


Q ss_pred             ---------------cccCCC-CC---------------------------CCCCcceeecceeecccCcccCCCCeEEE
Q 013823          276 ---------------DRQNDG-AS---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERII  312 (436)
Q Consensus       276 ---------------~r~~~~-~~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~iv  312 (436)
                                     ...... .+                           .+..+....+.||..|+..    .+.+++
T Consensus        77 ~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEep----p~~v~f  152 (546)
T PRK14957         77 ENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEP----PEYVKF  152 (546)
T ss_pred             HHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcC----CCCceE
Confidence                           000000 00                           0000111122344444432    244677


Q ss_pred             EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      |++|+.+..+.+++++  |+ ..++|..++.++....+...+...
T Consensus       153 IL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~e  194 (546)
T PRK14957        153 ILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKE  194 (546)
T ss_pred             EEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHc
Confidence            7777778999988888  88 789999999998877777765543

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.15  E-value=2.7e-10  Score=115.97  Aligned_cols=134  Identities=16%  Similarity=0.292  Sum_probs=88.1

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh---------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK---------  275 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~---------  275 (436)
                      ..+|.+|++|+|++..++.+...+..            ...+.++|||||||+|||++|+++|+.+.....         
T Consensus        10 k~rP~~~~~iig~~~~~~~l~~~i~~------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~   77 (367)
T PRK14970         10 KYRPQTFDDVVGQSHITNTLLNAIEN------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF   77 (367)
T ss_pred             HHCCCcHHhcCCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence            46789999999999998888776641            134578999999999999999999998863110         


Q ss_pred             ---cccCCCCC-------------C-C--C------------CcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc
Q 013823          276 ---DRQNDGAS-------------V-G--S------------NTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP  324 (436)
Q Consensus       276 ---~r~~~~~~-------------~-~--~------------~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~  324 (436)
                         ........             . .  +            ......+.|+..++.    .....++|++||.+..+.+
T Consensus        78 ~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~----~~~~~~~Il~~~~~~kl~~  153 (367)
T PRK14970         78 NIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEE----PPAHAIFILATTEKHKIIP  153 (367)
T ss_pred             ceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhC----CCCceEEEEEeCCcccCCH
Confidence               00000000             0 0  0            000011223333332    1234677788888899999


Q ss_pred             cccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          325 ALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       325 AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      ++.+  |+ ..++|+.|+.++...++.......
T Consensus       154 ~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~  183 (367)
T PRK14970        154 TILS--RC-QIFDFKRITIKDIKEHLAGIAVKE  183 (367)
T ss_pred             HHHh--cc-eeEecCCccHHHHHHHHHHHHHHc
Confidence            9988  76 468999999988877777655443

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=99.13  E-value=2.2e-10  Score=119.46  Aligned_cols=133  Identities=17%  Similarity=0.208  Sum_probs=88.8

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh---------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK---------  275 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~---------  275 (436)
                      ...|.+|++|+|++.+++.+...+..            ...+..+|||||||||||++|+++|+.+.....         
T Consensus        10 kyRP~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~   77 (451)
T PRK06305         10 KYRPQTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ   77 (451)
T ss_pred             HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence            35689999999999999888776641            134578999999999999999999998863210         


Q ss_pred             ----------------cccCCCC-CCC---------------CC------------cceeecceeecccCcccCCCCeEE
Q 013823          276 ----------------DRQNDGA-SVG---------------SN------------TKLTLSGILNFIDGLWSSCGDERI  311 (436)
Q Consensus       276 ----------------~r~~~~~-~~~---------------~~------------~~~~~s~LL~~ldg~~~~~~~~~i  311 (436)
                                      ....... +.+               ..            .....+.|+..|+.-    .+.++
T Consensus        78 c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep----~~~~~  153 (451)
T PRK06305         78 CASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP----PQHVK  153 (451)
T ss_pred             cHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC----CCCce
Confidence                            0000000 000               00            000112233333332    24577


Q ss_pred             EEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          312 IVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       312 vI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                      +|++||.+..|.+++.+  |+ ..++|+.++.++....+...+..
T Consensus       154 ~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~  195 (451)
T PRK06305        154 FFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQ  195 (451)
T ss_pred             EEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHH
Confidence            88888999999999998  88 47899999999877777766543

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=99.13  E-value=2.9e-10  Score=119.77  Aligned_cols=135  Identities=19%  Similarity=0.255  Sum_probs=90.9

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch-----------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE-----------  273 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~-----------  273 (436)
                      ..+|.+|++|+|++.+++.+...+.            ....+..||||||||+|||++|+++|+.+...           
T Consensus         7 KyRP~~fdeiiGqe~v~~~L~~~I~------------~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C   74 (535)
T PRK08451          7 KYRPKHFDELIGQESVSKTLSLALD------------NNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC   74 (535)
T ss_pred             HHCCCCHHHccCcHHHHHHHHHHHH------------cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence            4568999999999999988877654            11356779999999999999999999988421           


Q ss_pred             -------------hhcccCCC-C---------------------------CCCCCcceeecceeecccCcccCCCCeEEE
Q 013823          274 -------------MKDRQNDG-A---------------------------SVGSNTKLTLSGILNFIDGLWSSCGDERII  312 (436)
Q Consensus       274 -------------~~~r~~~~-~---------------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~iv  312 (436)
                                   +....... .                           +.+.......+.||..|+..    ...+.+
T Consensus        75 ~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp----p~~t~F  150 (535)
T PRK08451         75 IQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP----PSYVKF  150 (535)
T ss_pred             HHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc----CCceEE
Confidence                         10000000 0                           00001111222334444332    234677


Q ss_pred             EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccC
Q 013823          313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKG  358 (436)
Q Consensus       313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~  358 (436)
                      |++|+.+..|.+++++  |+ .+++|..++.++....+...+...+
T Consensus       151 IL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EG  193 (535)
T PRK08451        151 ILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEG  193 (535)
T ss_pred             EEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcC
Confidence            7888888999999998  86 6889999999988777777665543

>PRK13342 recombination factor protein RarA; Reviewed

Probab=99.12  E-value=2e-10  Score=118.72  Aligned_cols=136  Identities=18%  Similarity=0.214  Sum_probs=84.7

Q ss_pred             cCCCCCCcccccChhHHHH---HHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCC
Q 013823          205 LEHPSTFDTLAMDPELKQM---ILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDG  281 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~---i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~  281 (436)
                      .-+|.+|++++|++++...   +...+.    .         ....++||+||||||||++|+++|+.++..+.......
T Consensus         5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i~----~---------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~   71 (413)
T PRK13342          5 RMRPKTLDEVVGQEHLLGPGKPLRRMIE----A---------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT   71 (413)
T ss_pred             hhCCCCHHHhcCcHHHhCcchHHHHHHH----c---------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence            4568999999999988655   544432    1         12357999999999999999999999885443332221


Q ss_pred             CCCCC------------CcceeecceeecccCcccC---------CCCeEEEEEec--CCcCCCCccccCCCceeEEEEc
Q 013823          282 ASVGS------------NTKLTLSGILNFIDGLWSS---------CGDERIIVFTT--NHKERIDPALLRPGRMDVHINM  338 (436)
Q Consensus       282 ~~~~~------------~~~~~~s~LL~~ldg~~~~---------~~~~~ivI~TT--N~~~~lD~AllRpGR~d~~I~~  338 (436)
                      .....            ......--+++.++.+...         ....+++|++|  |....+++++++  |+ ..+.|
T Consensus        72 ~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~S--R~-~~~~~  148 (413)
T PRK13342         72 SGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLS--RA-QVFEL  148 (413)
T ss_pred             ccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhc--cc-eeeEe
Confidence            11000            0000000122222222100         01235556554  345589999999  98 78899


Q ss_pred             CCCCHHHHHHHHHHHhcc
Q 013823          339 SYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       339 ~~p~~~~r~~i~~~~l~~  356 (436)
                      +.++.++...++.+.+..
T Consensus       149 ~~ls~e~i~~lL~~~l~~  166 (413)
T PRK13342        149 KPLSEEDIEQLLKRALED  166 (413)
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999998887754

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=99.12  E-value=2.6e-10  Score=121.57  Aligned_cols=133  Identities=17%  Similarity=0.263  Sum_probs=90.5

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh----------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM----------  274 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~----------  274 (436)
                      ..+|.+|++|+|++.+++.+...+..            ...+..||||||||+|||++|+++|+.++..-          
T Consensus         9 kyRP~~f~diiGqe~iv~~L~~~i~~------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C   76 (563)
T PRK06647          9 KRRPRDFNSLEGQDFVVETLKHSIES------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC   76 (563)
T ss_pred             HhCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence            45689999999999999988776651            12456799999999999999999999987321          


Q ss_pred             --------------hcccCCC-CC---------------------------CCCCcceeecceeecccCcccCCCCeEEE
Q 013823          275 --------------KDRQNDG-AS---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERII  312 (436)
Q Consensus       275 --------------~~r~~~~-~~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~iv  312 (436)
                                    ....... ..                           .+..+....+.||..++.    ....+++
T Consensus        77 ~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe----pp~~~vf  152 (563)
T PRK06647         77 SSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE----PPPYIVF  152 (563)
T ss_pred             hHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc----CCCCEEE
Confidence                          0000000 00                           000011122334444443    2345788


Q ss_pred             EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                      |++|+.+..|.+++++  |+. .++|..++.++....+...+..
T Consensus       153 I~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~  193 (563)
T PRK06647        153 IFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLE  193 (563)
T ss_pred             EEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHH
Confidence            8888889999999998  884 6899999998887777766543

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.12  E-value=1.8e-10  Score=122.79  Aligned_cols=134  Identities=17%  Similarity=0.284  Sum_probs=89.8

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh---------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK---------  275 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~---------  275 (436)
                      ...|.+|++|+|++.+++.|...+..           | ..+..|||+||||||||++|+++|+.++....         
T Consensus         9 KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C   76 (624)
T PRK14959          9 RYRPQTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC   76 (624)
T ss_pred             HhCCCCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence            56789999999999998888776541           1 23458999999999999999999999974210         


Q ss_pred             ---------------cccCCC-CC---------------------------CCCCcceeecceeecccCcccCCCCeEEE
Q 013823          276 ---------------DRQNDG-AS---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERII  312 (436)
Q Consensus       276 ---------------~r~~~~-~~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~iv  312 (436)
                                     ...... ..                           .+.......+.||..|+.-    ...+++
T Consensus        77 ~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP----~~~~if  152 (624)
T PRK14959         77 EQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEP----PARVTF  152 (624)
T ss_pred             HHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhcc----CCCEEE
Confidence                           000000 00                           0000001112233333331    245788


Q ss_pred             EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      |++||.+..+.+.+++  |+ .+|+|+.++.++...++...+...
T Consensus       153 ILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~e  194 (624)
T PRK14959        153 VLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGRE  194 (624)
T ss_pred             EEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHc
Confidence            8999999999999888  88 578999999998887777765443

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.11  E-value=2.6e-10  Score=119.79  Aligned_cols=134  Identities=17%  Similarity=0.255  Sum_probs=89.4

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc--------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD--------  276 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~--------  276 (436)
                      ..+|.+|++++|++.+.+.+...+..            ...+..||||||||||||++|+++|..++..-..        
T Consensus         9 kyRP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c   76 (486)
T PRK14953          9 KYRPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC   76 (486)
T ss_pred             hhCCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence            45788999999999999988776641            1345679999999999999999999988631000        


Q ss_pred             ----------------ccCCC-CCC---------------------------CCCcceeecceeecccCcccCCCCeEEE
Q 013823          277 ----------------RQNDG-ASV---------------------------GSNTKLTLSGILNFIDGLWSSCGDERII  312 (436)
Q Consensus       277 ----------------r~~~~-~~~---------------------------~~~~~~~~s~LL~~ldg~~~~~~~~~iv  312 (436)
                                      ..... .+.                           +.......+.||..++..    ....++
T Consensus        77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep----p~~~v~  152 (486)
T PRK14953         77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP----PPRTIF  152 (486)
T ss_pred             HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC----CCCeEE
Confidence                            00000 000                           000001112233333332    234677


Q ss_pred             EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      |++|+.++.+++++.+  |+ ..+.|+.++.++....+...+...
T Consensus       153 Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~e  194 (486)
T PRK14953        153 ILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEE  194 (486)
T ss_pred             EEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHc
Confidence            7778888899999988  77 478999999999888888776554

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=99.09  E-value=4.5e-10  Score=120.41  Aligned_cols=135  Identities=16%  Similarity=0.252  Sum_probs=91.5

Q ss_pred             ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc-C---
Q 013823          204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ-N---  279 (436)
Q Consensus       204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~-~---  279 (436)
                      ....|.+|++|+|++.+++.|...+..           | ..+.++||+||||+|||++|+++|+.++....... .   
T Consensus        16 ~KyRP~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~   83 (598)
T PRK09111         16 RKYRPQTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI   83 (598)
T ss_pred             hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc
Confidence            356789999999999999988776541           1 34568999999999999999999999874321111 0   


Q ss_pred             CCCC------------------------C-----------------------------CCCcceeecceeecccCcccCC
Q 013823          280 DGAS------------------------V-----------------------------GSNTKLTLSGILNFIDGLWSSC  306 (436)
Q Consensus       280 ~~~~------------------------~-----------------------------~~~~~~~~s~LL~~ldg~~~~~  306 (436)
                      ..|+                        .                             +..+....+.||..|+..    
T Consensus        84 ~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP----  159 (598)
T PRK09111         84 DLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEP----  159 (598)
T ss_pred             ccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhC----
Confidence            0000                        0                             000000112233333322    


Q ss_pred             CCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          307 GDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       307 ~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      .+.+++|++|+.++.+.+.+++  |+ ..++|..++.++....+...+...
T Consensus       160 p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~ke  207 (598)
T PRK09111        160 PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKE  207 (598)
T ss_pred             CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHc
Confidence            2447788888888899989888  88 579999999999888888776554

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.07  E-value=2.5e-10  Score=117.48  Aligned_cols=133  Identities=14%  Similarity=0.240  Sum_probs=86.0

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc-------c
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD-------R  277 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~-------r  277 (436)
                      .-.|.+|++|+|++.+++.|...+..            ...+.++|||||||||||++|+++|+.+......       .
T Consensus         9 k~RP~~~~eiiGq~~~~~~L~~~~~~------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~   76 (397)
T PRK14955          9 KYRPKKFADITAQEHITRTIQNSLRM------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE   76 (397)
T ss_pred             hcCCCcHhhccChHHHHHHHHHHHHh------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence            45689999999999999987665541            1345679999999999999999999999752100       0


Q ss_pred             cCCCCC-------------------CC-C---------------------C------------cceeecceeecccCccc
Q 013823          278 QNDGAS-------------------VG-S---------------------N------------TKLTLSGILNFIDGLWS  304 (436)
Q Consensus       278 ~~~~~~-------------------~~-~---------------------~------------~~~~~s~LL~~ldg~~~  304 (436)
                      ...+|+                   ++ .                     .            .....+.|+..++.   
T Consensus        77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe---  153 (397)
T PRK14955         77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE---  153 (397)
T ss_pred             CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc---
Confidence            000000                   00 0                     0            00001112222222   


Q ss_pred             CCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          305 SCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       305 ~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                       ..+..++|++|+.+..+-+++.+  |+. .++|+.++.++....+...+..
T Consensus       154 -p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~  201 (397)
T PRK14955        154 -PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEA  201 (397)
T ss_pred             -CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHH
Confidence             22346777777888888888887  774 7899999988877777766543

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.07  E-value=9.7e-10  Score=102.78  Aligned_cols=150  Identities=15%  Similarity=0.214  Sum_probs=110.3

Q ss_pred             CccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc---hhh
Q 013823          199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV---EMK  275 (436)
Q Consensus       199 ~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~---~~~  275 (436)
                      ...+++..+|..+.+|+|-+.+|+.+.+....|+...         +...+||+|..|||||+|++|+-++++.   .+.
T Consensus        47 ~L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~---------pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLV  117 (287)
T COG2607          47 YLEPVPDPDPIDLADLVGVDRQKEALVRNTEQFAEGL---------PANNVLLWGARGTGKSSLVKALLNEYADEGLRLV  117 (287)
T ss_pred             cccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCC---------cccceEEecCCCCChHHHHHHHHHHHHhcCCeEE
Confidence            4556667778899999999999999999998887632         3468999999999999999999998871   111


Q ss_pred             cccCC---------------C------CC--CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCcccc-C---
Q 013823          276 DRQND---------------G------AS--VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALL-R---  328 (436)
Q Consensus       276 ~r~~~---------------~------~~--~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~All-R---  328 (436)
                      .....               +      |.  .-+........|-..|||-.+..+++|+|.+|+|+...|+.-+. +   
T Consensus       118 EV~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~  197 (287)
T COG2607         118 EVDKEDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGS  197 (287)
T ss_pred             EEcHHHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCc
Confidence            00000               0      00  01122233455667788877777788999999998777653221 0   


Q ss_pred             ----------------CCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          329 ----------------PGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       329 ----------------pGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                                      ..||...+.|+.|+.++..+|+.+|....
T Consensus       198 ~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~  242 (287)
T COG2607         198 TGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHF  242 (287)
T ss_pred             ccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHc
Confidence                            23999999999999999999999998655

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=99.06  E-value=6.5e-10  Score=122.82  Aligned_cols=134  Identities=29%  Similarity=0.235  Sum_probs=89.1

Q ss_pred             Ccc-cccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCC------
Q 013823          211 FDT-LAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGAS------  283 (436)
Q Consensus       211 ~~~-i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~------  283 (436)
                      ++. ..|.+++|+.|.+++.....       .+...+..++|+||||||||++++++|+.++..+...+..+..      
T Consensus       320 l~~~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~  392 (784)
T PRK10787        320 LDTDHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIR  392 (784)
T ss_pred             hhhhccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhc
Confidence            554 88999999999887763322       1222334689999999999999999999998544322111100      


Q ss_pred             ------CCCCcce-----------eecceeecccCcccCC------------------------------CCeEEEEEec
Q 013823          284 ------VGSNTKL-----------TLSGILNFIDGLWSSC------------------------------GDERIIVFTT  316 (436)
Q Consensus       284 ------~~~~~~~-----------~~s~LL~~ldg~~~~~------------------------------~~~~ivI~TT  316 (436)
                            .+.....           .---|++++|.+....                              -.++++|+||
T Consensus       393 g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~Ta  472 (784)
T PRK10787        393 GHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATS  472 (784)
T ss_pred             cchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcC
Confidence                  0000000           0002444444432211                              0358899999


Q ss_pred             CCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823          317 NHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG  355 (436)
Q Consensus       317 N~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~  355 (436)
                      |.. .|+|||+.  ||+ .|.++.++.++...|++++|.
T Consensus       473 N~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~  507 (784)
T PRK10787        473 NSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL  507 (784)
T ss_pred             CCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence            987 59999999  996 689999999999999999984

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.06  E-value=6.5e-10  Score=119.43  Aligned_cols=133  Identities=15%  Similarity=0.238  Sum_probs=87.1

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc-------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR-------  277 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r-------  277 (436)
                      .-+|.+|++|+|++.+++.|...+.            ....+.+|||+||||||||++|+++|+.++..-...       
T Consensus         9 kyRP~~f~eivGQe~i~~~L~~~i~------------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~   76 (620)
T PRK14954          9 KYRPSKFADITAQEHITHTIQNSLR------------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE   76 (620)
T ss_pred             HHCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence            3468999999999999998766543            124557799999999999999999999997531100       


Q ss_pred             cCCCCC-------------------CC-C---------------------C------------cceeecceeecccCccc
Q 013823          278 QNDGAS-------------------VG-S---------------------N------------TKLTLSGILNFIDGLWS  304 (436)
Q Consensus       278 ~~~~~~-------------------~~-~---------------------~------------~~~~~s~LL~~ldg~~~  304 (436)
                      ...+|+                   ++ .                     .            .....+.||..|+.-  
T Consensus        77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEeP--  154 (620)
T PRK14954         77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEP--  154 (620)
T ss_pred             cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCC--
Confidence            000000                   00 0                     0            000011233333332  


Q ss_pred             CCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          305 SCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       305 ~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                        .+..++|++|+.+..|-+++.+  |. ..++|..++.++....+...+..
T Consensus       155 --p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~  201 (620)
T PRK14954        155 --PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRA  201 (620)
T ss_pred             --CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHH
Confidence              2346777777888999999888  77 68899999998877766665543

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=99.05  E-value=8.7e-10  Score=110.37  Aligned_cols=137  Identities=14%  Similarity=0.149  Sum_probs=84.3

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh-----hcccC
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM-----KDRQN  279 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~-----~~r~~  279 (436)
                      ...|.+|++++|.+++++.+...+..           +  ...++|||||||||||++|+++|+++....     .....
T Consensus         8 ky~P~~~~~~~g~~~~~~~L~~~~~~-----------~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~   74 (337)
T PRK12402          8 KYRPALLEDILGQDEVVERLSRAVDS-----------P--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV   74 (337)
T ss_pred             hhCCCcHHHhcCCHHHHHHHHHHHhC-----------C--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence            55789999999999988888665431           1  113699999999999999999999885211     00000


Q ss_pred             CCC--------CCCC--------------------------------CcceeecceeecccCcc-----------cCCCC
Q 013823          280 DGA--------SVGS--------------------------------NTKLTLSGILNFIDGLW-----------SSCGD  308 (436)
Q Consensus       280 ~~~--------~~~~--------------------------------~~~~~~s~LL~~ldg~~-----------~~~~~  308 (436)
                      ...        ..+.                                ......--++..+|.+.           ....+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~  154 (337)
T PRK12402         75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSR  154 (337)
T ss_pred             hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccC
Confidence            000        0000                                00000001222222221           01122


Q ss_pred             eEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          309 ERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       309 ~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      ...+|+||+.+..+.+++.+  |+ ..++|+.|+.++...++...+...
T Consensus       155 ~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~  200 (337)
T PRK12402        155 TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAE  200 (337)
T ss_pred             CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHc
Confidence            34566777777788888887  76 578999999999888888876654

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.04  E-value=8.4e-10  Score=118.82  Aligned_cols=134  Identities=15%  Similarity=0.243  Sum_probs=87.0

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC--
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA--  282 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~--  282 (436)
                      ...|.+|++|+|++.+++.|...+..            ...+..+|||||||||||++|+++|+.++..........|  
T Consensus         9 kyRP~~~~eiiGq~~~~~~L~~~i~~------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~   76 (585)
T PRK14950          9 KWRSQTFAELVGQEHVVQTLRNAIAE------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT   76 (585)
T ss_pred             HhCCCCHHHhcCCHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence            45689999999999999988765541            1234568999999999999999999988632210000000  


Q ss_pred             ----------------------CC-----------------CC------------CcceeecceeecccCcccCCCCeEE
Q 013823          283 ----------------------SV-----------------GS------------NTKLTLSGILNFIDGLWSSCGDERI  311 (436)
Q Consensus       283 ----------------------~~-----------------~~------------~~~~~~s~LL~~ldg~~~~~~~~~i  311 (436)
                                            ..                 ..            ......+.||..|+..    ....+
T Consensus        77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEep----p~~tv  152 (585)
T PRK14950         77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEP----PPHAI  152 (585)
T ss_pred             CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcC----CCCeE
Confidence                                  00                 00            0000112233333322    23467


Q ss_pred             EEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          312 IVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       312 vI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      +|++|+.++.+.+.+.+  |+ ..++|+.++..+...++...+...
T Consensus       153 ~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~e  195 (585)
T PRK14950        153 FILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAE  195 (585)
T ss_pred             EEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHc
Confidence            78888888888888887  77 468999999988877777765543

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=99.02  E-value=1e-09  Score=116.75  Aligned_cols=45  Identities=33%  Similarity=0.256  Sum_probs=39.1

Q ss_pred             EEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          310 RIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       310 ~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      ++|++|||.|+.|+|++++  |+ ..|.|+.++.+++..|+++.+...
T Consensus       235 rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~Il~~~a~k~  279 (531)
T TIGR02902       235 RLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKEIAKNAAEKI  279 (531)
T ss_pred             EEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHHHHHHHHHHHc
Confidence            6777888999999999999  98 478899999999999999988654

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.01  E-value=1.5e-09  Score=117.18  Aligned_cols=133  Identities=18%  Similarity=0.275  Sum_probs=86.8

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc-------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR-------  277 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r-------  277 (436)
                      ...|.+|++++|++++++.|...+..           | ....++|||||||||||++|+++|+.++......       
T Consensus         9 kyRP~~f~~liGq~~i~~~L~~~l~~-----------~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg   76 (620)
T PRK14948          9 KYRPQRFDELVGQEAIATTLKNALIS-----------N-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG   76 (620)
T ss_pred             HhCCCcHhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence            45689999999999999988776551           1 1345799999999999999999999987421100       


Q ss_pred             -------------------cCCC-CC---------------------------CCCCcceeecceeecccCcccCCCCeE
Q 013823          278 -------------------QNDG-AS---------------------------VGSNTKLTLSGILNFIDGLWSSCGDER  310 (436)
Q Consensus       278 -------------------~~~~-~~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~  310 (436)
                                         .... ..                           .+.......+.||..|+.    .....
T Consensus        77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe----Pp~~t  152 (620)
T PRK14948         77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE----PPPRV  152 (620)
T ss_pred             ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc----CCcCe
Confidence                               0000 00                           000000112223334433    22447


Q ss_pred             EEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          311 IIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       311 ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                      ++|++|++++.+-+++++  |+ ..++|+.++.++....+......
T Consensus       153 vfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~k  195 (620)
T PRK14948        153 VFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEK  195 (620)
T ss_pred             EEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHH
Confidence            788888889999999988  88 56889988888766555554433

>PRK06893 DNA replication initiation factor; Validated

Probab=99.00  E-value=1.9e-09  Score=102.62  Aligned_cols=141  Identities=13%  Similarity=0.146  Sum_probs=76.6

Q ss_pred             cccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc-----chhhcc
Q 013823          203 INLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS-----VEMKDR  277 (436)
Q Consensus       203 ~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~-----~~~~~r  277 (436)
                      +....+.+||+.++.+...  +...+..         .........++||||||||||+|++|+|+++.     +.+...
T Consensus         7 ~~~~~~~~fd~f~~~~~~~--~~~~~~~---------~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~   75 (229)
T PRK06893          7 IHQIDDETLDNFYADNNLL--LLDSLRK---------NFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL   75 (229)
T ss_pred             CCCCCcccccccccCChHH--HHHHHHH---------HhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence            3456678999998766421  2121111         11111224579999999999999999999863     111000


Q ss_pred             cCCCCC------------------CCC--CcceeecceeecccCcccCCCCeEEEEEecC-CcCCCC---ccccCCCcee
Q 013823          278 QNDGAS------------------VGS--NTKLTLSGILNFIDGLWSSCGDERIIVFTTN-HKERID---PALLRPGRMD  333 (436)
Q Consensus       278 ~~~~~~------------------~~~--~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN-~~~~lD---~AllRpGR~d  333 (436)
                      ......                  .+.  .....-..|++.++.....  +..++|+|+| .|..++   |.+.+..+..
T Consensus        76 ~~~~~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~--~~~illits~~~p~~l~~~~~~L~sRl~~g  153 (229)
T PRK06893         76 SKSQYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ--GKTLLLISADCSPHALSIKLPDLASRLTWG  153 (229)
T ss_pred             HHhhhhhHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc--CCcEEEEeCCCChHHccccchhHHHHHhcC
Confidence            000000                  000  0000001122223322221  2245555554 566654   7888833445


Q ss_pred             EEEEcCCCCHHHHHHHHHHHhcc
Q 013823          334 VHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       334 ~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                      ..++++.|+.+++..++++....
T Consensus       154 ~~~~l~~pd~e~~~~iL~~~a~~  176 (229)
T PRK06893        154 EIYQLNDLTDEQKIIVLQRNAYQ  176 (229)
T ss_pred             CeeeCCCCCHHHHHHHHHHHHHH
Confidence            78899999999999999887643

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=99.00  E-value=1.1e-09  Score=114.38  Aligned_cols=134  Identities=18%  Similarity=0.310  Sum_probs=97.1

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh-----------
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM-----------  274 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~-----------  274 (436)
                      .+|.+|++++|++.+.+.|...+..            .....+|||.||.||||||+|+.+|+.++..-           
T Consensus        10 yRP~~F~evvGQe~v~~~L~nal~~------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~   77 (515)
T COG2812          10 YRPKTFDDVVGQEHVVKTLSNALEN------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI   77 (515)
T ss_pred             hCcccHHHhcccHHHHHHHHHHHHh------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence            4578999999999999999887651            12346899999999999999999999998221           


Q ss_pred             -------------hcccCCC---C-------------------------CCCCCcceeecceeecccCcccCCCCeEEEE
Q 013823          275 -------------KDRQNDG---A-------------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIV  313 (436)
Q Consensus       275 -------------~~r~~~~---~-------------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI  313 (436)
                                   ...+..+   .                         +.+..++...+.||.-++.-    ...+++|
T Consensus        78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEP----P~hV~FI  153 (515)
T COG2812          78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEP----PSHVKFI  153 (515)
T ss_pred             hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccC----ccCeEEE
Confidence                         0000000   0                         00112233445566555543    3459999


Q ss_pred             EecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccC
Q 013823          314 FTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKG  358 (436)
Q Consensus       314 ~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~  358 (436)
                      ++|..++++++.+++  |+ .+..|...+.++....+...+...+
T Consensus       154 lATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~  195 (515)
T COG2812         154 LATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEG  195 (515)
T ss_pred             EecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcC
Confidence            999999999999998  88 5678899999998888888887654

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.00  E-value=1.9e-09  Score=116.33  Aligned_cols=134  Identities=17%  Similarity=0.271  Sum_probs=89.8

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc--------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD--------  276 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~--------  276 (436)
                      ...|.+|++|+|++.+++.|...+..            ...+..||||||+|+|||++|+++|+.+......        
T Consensus        10 kyRP~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~   77 (614)
T PRK14971         10 KYRPSTFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE   77 (614)
T ss_pred             HHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence            45789999999999999988776651            1345779999999999999999999988622100        


Q ss_pred             -----------------ccCCCCC----------------------------CCCCcceeecceeecccCcccCCCCeEE
Q 013823          277 -----------------RQNDGAS----------------------------VGSNTKLTLSGILNFIDGLWSSCGDERI  311 (436)
Q Consensus       277 -----------------r~~~~~~----------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~i  311 (436)
                                       ....+..                            .+..+....+.|+..|+..    .+..+
T Consensus        78 C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep----p~~ti  153 (614)
T PRK14971         78 CESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP----PSYAI  153 (614)
T ss_pred             chHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC----CCCeE
Confidence                             0000000                            0000011122234444432    23467


Q ss_pred             EEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          312 IVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       312 vI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      +|++|+.+..|-+++++  |+ ..++|..++.++....+...+...
T Consensus       154 fIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~e  196 (614)
T PRK14971        154 FILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKE  196 (614)
T ss_pred             EEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHc
Confidence            78888888899999998  87 568999999998877777665544

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=98.96  E-value=8.2e-09  Score=102.87  Aligned_cols=126  Identities=15%  Similarity=0.172  Sum_probs=85.2

Q ss_pred             CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc--------hhhcccC--
Q 013823          210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV--------EMKDRQN--  279 (436)
Q Consensus       210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~--------~~~~r~~--  279 (436)
                      +|++|+|++.+++.+...+.            ....+..||||||+|+|||++|+++|..+..        ++.....  
T Consensus         2 ~~~~i~g~~~~~~~l~~~~~------------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~   69 (313)
T PRK05564          2 SFHTIIGHENIKNRIKNSII------------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN   69 (313)
T ss_pred             ChhhccCcHHHHHHHHHHHH------------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence            68999999999998877653            1245578999999999999999999997641        1111100  


Q ss_pred             -CCC-----------------CC----------CCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCc
Q 013823          280 -DGA-----------------SV----------GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGR  331 (436)
Q Consensus       280 -~~~-----------------~~----------~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR  331 (436)
                       ...                 ..          +..+....+.||..++.-    .+..++|++|+.++.|-|.+++  |
T Consensus        70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEep----p~~t~~il~~~~~~~ll~TI~S--R  143 (313)
T PRK05564         70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEP----PKGVFIILLCENLEQILDTIKS--R  143 (313)
T ss_pred             CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCC----CCCeEEEEEeCChHhCcHHHHh--h
Confidence             000                 00          001111223455555542    3457888888889999999998  8


Q ss_pred             eeEEEEcCCCCHHHHHHHHHHHh
Q 013823          332 MDVHINMSYCTVHGFKVLASNYL  354 (436)
Q Consensus       332 ~d~~I~~~~p~~~~r~~i~~~~l  354 (436)
                      + .+++|+.|+.++....+...+
T Consensus       144 c-~~~~~~~~~~~~~~~~l~~~~  165 (313)
T PRK05564        144 C-QIYKLNRLSKEEIEKFISYKY  165 (313)
T ss_pred             c-eeeeCCCcCHHHHHHHHHHHh
Confidence            8 589999999988766665443

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=98.96  E-value=3.6e-09  Score=104.99  Aligned_cols=137  Identities=18%  Similarity=0.216  Sum_probs=87.6

Q ss_pred             CccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh----
Q 013823          199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM----  274 (436)
Q Consensus       199 ~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~----  274 (436)
                      .|.  ....|.+|++++|.+++++.+...+..           +  ....+|||||||||||++++++++++....    
T Consensus         6 ~w~--~kyrP~~~~~~~g~~~~~~~l~~~i~~-----------~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~   70 (319)
T PRK00440          6 IWV--EKYRPRTLDEIVGQEEIVERLKSYVKE-----------K--NMPHLLFAGPPGTGKTTAALALARELYGEDWREN   70 (319)
T ss_pred             ccc--hhhCCCcHHHhcCcHHHHHHHHHHHhC-----------C--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccc
Confidence            454  367789999999999988888765531           1  112589999999999999999999874111    


Q ss_pred             -hcccCCCCC-----------------CC-CCcce------------eecceeecccCcccCCCCeEEEEEecCCcCCCC
Q 013823          275 -KDRQNDGAS-----------------VG-SNTKL------------TLSGILNFIDGLWSSCGDERIIVFTTNHKERID  323 (436)
Q Consensus       275 -~~r~~~~~~-----------------~~-~~~~~------------~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD  323 (436)
                       .........                 .. ...+.            ....|+..++..    .....+|+++|.+..+.
T Consensus        71 ~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~----~~~~~lIl~~~~~~~l~  146 (319)
T PRK00440         71 FLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMY----SQNTRFILSCNYSSKII  146 (319)
T ss_pred             eEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcC----CCCCeEEEEeCCccccc
Confidence             000000000                 00 00000            011122222222    23356778888888888


Q ss_pred             ccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          324 PALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       324 ~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      +++.+  |+. .++|+.++.++...++..++...
T Consensus       147 ~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~  177 (319)
T PRK00440        147 DPIQS--RCA-VFRFSPLKKEAVAERLRYIAENE  177 (319)
T ss_pred             hhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHc
Confidence            88888  775 58999999999888888887654

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=98.95  E-value=9.4e-09  Score=102.93  Aligned_cols=134  Identities=19%  Similarity=0.219  Sum_probs=84.7

Q ss_pred             CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc-------chhhccc-
Q 013823          207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS-------VEMKDRQ-  278 (436)
Q Consensus       207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~-------~~~~~r~-  278 (436)
                      .|.+|.+|+|+++.++.+.-.+..             +...++||+||||||||++|+++|+.+.       .+..... 
T Consensus         3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~   69 (334)
T PRK13407          3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP   69 (334)
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence            467899999999999877543220             1125799999999999999999999983       2100000 


Q ss_pred             -----------------------CCCC-------C---------CC-----------------------CCcceeeccee
Q 013823          279 -----------------------NDGA-------S---------VG-----------------------SNTKLTLSGIL  296 (436)
Q Consensus       279 -----------------------~~~~-------~---------~~-----------------------~~~~~~~s~LL  296 (436)
                                             ....       +         .+                       .....+.+.|+
T Consensus        70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Ll  149 (334)
T PRK13407         70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLL  149 (334)
T ss_pred             cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHH
Confidence                                   0000       0         00                       00111122233


Q ss_pred             ecccC---------cccCCCCeEEEEEecCCcC-CCCccccCCCceeEEEEcCCCCH-HHHHHHHHHHhc
Q 013823          297 NFIDG---------LWSSCGDERIIVFTTNHKE-RIDPALLRPGRMDVHINMSYCTV-HGFKVLASNYLG  355 (436)
Q Consensus       297 ~~ldg---------~~~~~~~~~ivI~TTN~~~-~lD~AllRpGR~d~~I~~~~p~~-~~r~~i~~~~l~  355 (436)
                      +.|+.         ........+++|+|+|..+ .++++++.  ||...|.+++|.. +++.+++.+...
T Consensus       150 e~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~~  217 (334)
T PRK13407        150 DVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRDA  217 (334)
T ss_pred             HHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhhc
Confidence            33321         1111123467888888655 58999999  9999999999988 788888887543

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=98.94  E-value=3.9e-09  Score=116.59  Aligned_cols=134  Identities=19%  Similarity=0.208  Sum_probs=84.0

Q ss_pred             CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh----------cchhhc
Q 013823          207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------SVEMKD  276 (436)
Q Consensus       207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~  276 (436)
                      .|..++.++|.++..+.+.+.+.             ...+.++||+||||||||++|+++|..+          +..+..
T Consensus       177 r~~~l~~~igr~~ei~~~~~~L~-------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~  243 (731)
T TIGR02639       177 KNGKIDPLIGREDELERTIQVLC-------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS  243 (731)
T ss_pred             hcCCCCcccCcHHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence            56789999999888887665443             1234689999999999999999999987          211111


Q ss_pred             cc-----CCCCCCCCC---ccee------ecceeecccCcc---cC------------------CCCeEEEEEecCCcC-
Q 013823          277 RQ-----NDGASVGSN---TKLT------LSGILNFIDGLW---SS------------------CGDERIIVFTTNHKE-  320 (436)
Q Consensus       277 r~-----~~~~~~~~~---~~~~------~s~LL~~ldg~~---~~------------------~~~~~ivI~TTN~~~-  320 (436)
                      .+     ......+..   -+..      ....+-++|.+.   ..                  ...++.+|++||..+ 
T Consensus       244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~  323 (731)
T TIGR02639       244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEY  323 (731)
T ss_pred             ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHH
Confidence            00     000000000   0000      001112222221   00                  013477888888643 


Q ss_pred             ----CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          321 ----RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       321 ----~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                          .+|+|+.|  ||. .|+++.|+.+++..|++.....
T Consensus       324 ~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~  360 (731)
T TIGR02639       324 KNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEK  360 (731)
T ss_pred             HHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHH
Confidence                57999999  997 7999999999999999976544

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=98.94  E-value=3.6e-09  Score=100.36  Aligned_cols=138  Identities=16%  Similarity=0.231  Sum_probs=74.8

Q ss_pred             ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc-----chhhccc
Q 013823          204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS-----VEMKDRQ  278 (436)
Q Consensus       204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~-----~~~~~r~  278 (436)
                      ....|.+||++++...  +.+...+.....        +....++++|+||||||||+||+++++++.     .......
T Consensus        10 ~~~~~~~~d~f~~~~~--~~~~~~l~~~~~--------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~   79 (227)
T PRK08903         10 GPPPPPTFDNFVAGEN--AELVARLRELAA--------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA   79 (227)
T ss_pred             CCCChhhhcccccCCc--HHHHHHHHHHHh--------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence            4456678999773321  122222322211        233457899999999999999999999862     1110000


Q ss_pred             C-------C-CC------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcC---CCCccccCCCce--eEEEEcC
Q 013823          279 N-------D-GA------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE---RIDPALLRPGRM--DVHINMS  339 (436)
Q Consensus       279 ~-------~-~~------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~---~lD~AllRpGR~--d~~I~~~  339 (436)
                      .       . ..      +.+.........|+..++.....  ...++|+|++.+.   .+.+.+.+  ||  ...|++|
T Consensus        80 ~~~~~~~~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~--~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~  155 (227)
T PRK08903         80 SPLLAFDFDPEAELYAVDDVERLDDAQQIALFNLFNRVRAH--GQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELK  155 (227)
T ss_pred             HhHHHHhhcccCCEEEEeChhhcCchHHHHHHHHHHHHHHc--CCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEec
Confidence            0       0 00      00000111112234444443322  2234566665432   34566666  77  5799999


Q ss_pred             CCCHHHHHHHHHHHhc
Q 013823          340 YCTVHGFKVLASNYLG  355 (436)
Q Consensus       340 ~p~~~~r~~i~~~~l~  355 (436)
                      .|+.++...++..+..
T Consensus       156 pl~~~~~~~~l~~~~~  171 (227)
T PRK08903        156 PLSDADKIAALKAAAA  171 (227)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999888777776554

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=2.4e-09  Score=112.75  Aligned_cols=160  Identities=17%  Similarity=0.213  Sum_probs=102.6

Q ss_pred             cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh----------------
Q 013823          212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK----------------  275 (436)
Q Consensus       212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~----------------  275 (436)
                      ++++..+..|+...++...+           +..+..+||+||+|||||.|++++++++..++.                
T Consensus       408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~  476 (952)
T KOG0735|consen  408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL  476 (952)
T ss_pred             Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence            56777777777766543322           233467999999999999999999999871110                


Q ss_pred             -------------------------cc---cCCCCCCCC---CcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc
Q 013823          276 -------------------------DR---QNDGASVGS---NTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP  324 (436)
Q Consensus       276 -------------------------~r---~~~~~~~~~---~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~  324 (436)
                                               +.   ...+...++   .....+..+++.+-......+..+.+|+|.+..+.|.|
T Consensus       477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~  556 (952)
T KOG0735|consen  477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNP  556 (952)
T ss_pred             HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcCh
Confidence                                     00   000001111   11112333443222222222345689999999999999


Q ss_pred             cccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHH
Q 013823          325 ALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAE  383 (436)
Q Consensus       325 AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~  383 (436)
                      -|..|++|+.++.+|.|...+|.+|+.+.+...- ......++.-++..+ +|.+-|+.-
T Consensus       557 ~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~-~~~~~~dLd~ls~~TEGy~~~DL~i  615 (952)
T KOG0735|consen  557 LLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNL-SDITMDDLDFLSVKTEGYLATDLVI  615 (952)
T ss_pred             hhcCccceEEEEecCCcchhHHHHHHHHHHHhhh-hhhhhHHHHHHHHhcCCccchhHHH
Confidence            9999999999999999999999999999986542 223344444455444 366665543

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=98.89  E-value=2.5e-08  Score=101.30  Aligned_cols=131  Identities=15%  Similarity=0.203  Sum_probs=87.7

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ------  278 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~------  278 (436)
                      ..+|+++++|+|+++.++.+.+.+..            ...+.++||+||+|+||+++|.++|+.+-..-....      
T Consensus        12 ~~~P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~   79 (365)
T PRK07471         12 APHPRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPP   79 (365)
T ss_pred             CCCCCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccc
Confidence            36899999999999999998776551            235678999999999999999999998852210000      


Q ss_pred             ------CCCC---------------------CCCC--------------------------------------Ccceeec
Q 013823          279 ------NDGA---------------------SVGS--------------------------------------NTKLTLS  293 (436)
Q Consensus       279 ------~~~~---------------------~~~~--------------------------------------~~~~~~s  293 (436)
                            ...+                     ....                                      .+....+
T Consensus        80 ~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aan  159 (365)
T PRK07471         80 PTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAAN  159 (365)
T ss_pred             cccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHH
Confidence                  0000                     0000                                      0000011


Q ss_pred             ceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHh
Q 013823          294 GILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL  354 (436)
Q Consensus       294 ~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l  354 (436)
                      .||..++.    .....++|++|+.++.+.|.+++  |+ ..|.|+.|+.++...++....
T Consensus       160 aLLK~LEe----pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~  213 (365)
T PRK07471        160 ALLKVLEE----PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAG  213 (365)
T ss_pred             HHHHHHhc----CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhc
Confidence            12222221    12347888999999999999887  88 688999999999887777654

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=4.1e-09  Score=111.96  Aligned_cols=134  Identities=19%  Similarity=0.202  Sum_probs=89.9

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcchhhcccCC-------------------------CC-------------CCCCCc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQND-------------------------GA-------------SVGSNT  288 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~-------------------------~~-------------~~~~~~  288 (436)
                      -.+||+|+||||||++++++|.++|..++..+..                         +.             .+++..
T Consensus       432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged  511 (953)
T KOG0736|consen  432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGED  511 (953)
T ss_pred             eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCchh
Confidence            4599999999999999999999999443322110                         00             111111


Q ss_pred             ceee---cceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHH
Q 013823          289 KLTL---SGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFG  365 (436)
Q Consensus       289 ~~~~---s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~  365 (436)
                      .+.+   ..++. +|..... ...+|||+||+..+.+++.+.+  -|-+.|.+|.|+.++|.+|++-|+...  .-....
T Consensus       512 ~rl~~~i~~~ls-~e~~~~~-~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~--~~n~~v  585 (953)
T KOG0736|consen  512 ARLLKVIRHLLS-NEDFKFS-CPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHL--PLNQDV  585 (953)
T ss_pred             HHHHHHHHHHHh-cccccCC-CCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhcc--ccchHH
Confidence            1111   11222 2333322 3468999999999999999998  888999999999999999999998654  222223


Q ss_pred             HHHhhhhcC-CCCHHHHHHHHh
Q 013823          366 EIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       366 ~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      ..+.++... +|+.+++...+.
T Consensus       586 ~~k~~a~~t~gfs~~~L~~l~~  607 (953)
T KOG0736|consen  586 NLKQLARKTSGFSFGDLEALVA  607 (953)
T ss_pred             HHHHHHHhcCCCCHHHHHHHhc
Confidence            344555544 589988866543

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.87  E-value=7.7e-09  Score=97.63  Aligned_cols=135  Identities=14%  Similarity=0.174  Sum_probs=72.6

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc---hhh-----c
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV---EMK-----D  276 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~---~~~-----~  276 (436)
                      ...+.+|++.+..  ..+.+.+.+...+.         ...++.++|+||||||||++|+++++++..   .+.     .
T Consensus         8 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~---------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~   76 (226)
T TIGR03420         8 LPDDPTFDNFYAG--GNAELLAALRQLAA---------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE   76 (226)
T ss_pred             CCCchhhcCcCcC--CcHHHHHHHHHHHh---------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence            4455678888731  22333333332221         133578999999999999999999987741   100     0


Q ss_pred             ccC------C---C--C----CCCCCcce--eecceeecccCcccCCCCeEEEEEecC-CcCCCC---ccccCCCce--e
Q 013823          277 RQN------D---G--A----SVGSNTKL--TLSGILNFIDGLWSSCGDERIIVFTTN-HKERID---PALLRPGRM--D  333 (436)
Q Consensus       277 r~~------~---~--~----~~~~~~~~--~~s~LL~~ldg~~~~~~~~~ivI~TTN-~~~~lD---~AllRpGR~--d  333 (436)
                      ...      .   .  .    +.+.....  ....|...++.....  + ..+|+|+| .+..++   +.+.+  |+  .
T Consensus        77 ~~~~~~~~~~~~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~--~-~~iIits~~~~~~~~~~~~~L~~--r~~~~  151 (226)
T TIGR03420        77 LAQADPEVLEGLEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREA--G-GRLLIAGRAAPAQLPLRLPDLRT--RLAWG  151 (226)
T ss_pred             HHHhHHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc--C-CeEEEECCCChHHCCcccHHHHH--HHhcC
Confidence            000      0   0  0    00000000  011223333322211  1 24455555 444432   66776  66  4


Q ss_pred             EEEEcCCCCHHHHHHHHHHHhc
Q 013823          334 VHINMSYCTVHGFKVLASNYLG  355 (436)
Q Consensus       334 ~~I~~~~p~~~~r~~i~~~~l~  355 (436)
                      .+|.+|.|+.+++..+++.+..
T Consensus       152 ~~i~l~~l~~~e~~~~l~~~~~  173 (226)
T TIGR03420       152 LVFQLPPLSDEEKIAALQSRAA  173 (226)
T ss_pred             eeEecCCCCHHHHHHHHHHHHH
Confidence            7899999999999988887654

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=98.87  E-value=7.2e-09  Score=113.41  Aligned_cols=138  Identities=17%  Similarity=0.177  Sum_probs=82.2

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCC
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASV  284 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~  284 (436)
                      .-+|.+|++++|++.+.... ..+...+..         ....++|||||||||||++|+++|+.++..+..........
T Consensus        21 k~RP~tldd~vGQe~ii~~~-~~L~~~i~~---------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i   90 (725)
T PRK13341         21 RLRPRTLEEFVGQDHILGEG-RLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGV   90 (725)
T ss_pred             hcCCCcHHHhcCcHHHhhhh-HHHHHHHhc---------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhh
Confidence            45589999999999887531 112222211         12246899999999999999999998874432221111100


Q ss_pred             CC-------------CcceeecceeecccCcccC---------CCCeEEEEEec--CCcCCCCccccCCCceeEEEEcCC
Q 013823          285 GS-------------NTKLTLSGILNFIDGLWSS---------CGDERIIVFTT--NHKERIDPALLRPGRMDVHINMSY  340 (436)
Q Consensus       285 ~~-------------~~~~~~s~LL~~ldg~~~~---------~~~~~ivI~TT--N~~~~lD~AllRpGR~d~~I~~~~  340 (436)
                      ..             ......--++..++.+...         ....+++|++|  |....+++++++  |+ ..+.|+.
T Consensus        91 ~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~p  167 (725)
T PRK13341         91 KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVS--RS-RLFRLKS  167 (725)
T ss_pred             HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhc--cc-cceecCC
Confidence            00             0000001123333322110         11235566544  334578999998  75 4689999


Q ss_pred             CCHHHHHHHHHHHhc
Q 013823          341 CTVHGFKVLASNYLG  355 (436)
Q Consensus       341 p~~~~r~~i~~~~l~  355 (436)
                      ++.+++..++++.+.
T Consensus       168 Ls~edi~~IL~~~l~  182 (725)
T PRK13341        168 LSDEDLHQLLKRALQ  182 (725)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999998875

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=98.87  E-value=1.6e-08  Score=98.23  Aligned_cols=44  Identities=27%  Similarity=0.358  Sum_probs=36.4

Q ss_pred             eEEEEEecCCcC-----CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823          309 ERIIVFTTNHKE-----RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG  355 (436)
Q Consensus       309 ~~ivI~TTN~~~-----~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~  355 (436)
                      +..||+|+|...     .+++|+++  || ..+.+++|+.++-.+|+....+
T Consensus       151 ~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~  199 (262)
T TIGR02640       151 EFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD  199 (262)
T ss_pred             CCEEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC
Confidence            346899999763     57899999  99 7899999999998888887764

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=98.85  E-value=8.4e-09  Score=113.39  Aligned_cols=133  Identities=16%  Similarity=0.226  Sum_probs=85.8

Q ss_pred             ccccChhHHHHHHHHHHHHHhhHHHHHHhCCC---Cc-ceeeEeCCCCCChhHHHHHHHHHhcchhhcccCC--------
Q 013823          213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKA---WK-RGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQND--------  280 (436)
Q Consensus       213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~---~~-rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~--------  280 (436)
                      .|+|+++.++.|.+.+....        .|+.   .| ..+||+||||||||++|+++|..++..+......        
T Consensus       459 ~ViGQ~~ai~~l~~~i~~~~--------~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~  530 (758)
T PRK11034        459 LVFGQDKAIEALTEAIKMSR--------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV  530 (758)
T ss_pred             eEeCcHHHHHHHHHHHHHHh--------ccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccH
Confidence            37899999998888776432        2321   22 3599999999999999999999998443211100        


Q ss_pred             -------CCCCC-------------------------CCcceeecceeecccCc-ccC-C-----CCeEEEEEecCCc--
Q 013823          281 -------GASVG-------------------------SNTKLTLSGILNFIDGL-WSS-C-----GDERIIVFTTNHK--  319 (436)
Q Consensus       281 -------~~~~~-------------------------~~~~~~~s~LL~~ldg~-~~~-~-----~~~~ivI~TTN~~--  319 (436)
                             +...+                         .......+.||+.||.- ... .     -.+.|+|+|||.-  
T Consensus       531 ~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~  610 (758)
T PRK11034        531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVR  610 (758)
T ss_pred             HHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHH
Confidence                   00000                         00112234455555521 111 1     1357899999922  


Q ss_pred             -----------------------CCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823          320 -----------------------ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG  355 (436)
Q Consensus       320 -----------------------~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~  355 (436)
                                             ..+.|.|+.  |+|.+|.|+..+.++...|+..++.
T Consensus       611 ~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~  667 (758)
T PRK11034        611 ETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV  667 (758)
T ss_pred             HHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence                                   124566666  9999999999999999999988874

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=1.1e-08  Score=108.19  Aligned_cols=148  Identities=27%  Similarity=0.375  Sum_probs=105.1

Q ss_pred             HhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc-------------------------cCCCC----
Q 013823          232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR-------------------------QNDGA----  282 (436)
Q Consensus       232 l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r-------------------------~~~~~----  282 (436)
                      +..++.++..+..++++++++||||||||++++++|++ +......                         ....+    
T Consensus         4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~   82 (494)
T COG0464           4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI   82 (494)
T ss_pred             ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence            34567788899999999999999999999999999997 2110000                         00000    


Q ss_pred             ------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHH
Q 013823          283 ------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLA  350 (436)
Q Consensus       283 ------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~  350 (436)
                                  ..........+.++..+|++.  .+. ++++..||.+..+|+++.+||||+..+.++.|+...+..+.
T Consensus        83 d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~  159 (494)
T COG0464          83 DEIDALAPKRSSDQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEIL  159 (494)
T ss_pred             chhhhcccCccccccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHH
Confidence                        111223345778889999998  455 88888999999999999999999999999999999987777


Q ss_pred             HHHhcccCCCCCcHHHHHhhhhc-CCCCHHHHHHHH
Q 013823          351 SNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEEL  385 (436)
Q Consensus       351 ~~~l~~~~~~~~~~~~i~~l~~~-~~~tpaei~~~l  385 (436)
                      ........  .........++.. ..++.+++...+
T Consensus       160 ~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~l~  193 (494)
T COG0464         160 QIHTRLMF--LGPPGTGKTLAARTVGKSGADLGALA  193 (494)
T ss_pred             HHHHhcCC--CcccccHHHHHHhcCCccHHHHHHHH
Confidence            76654331  1112233344433 347777776665

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=98.82  E-value=4.3e-08  Score=99.05  Aligned_cols=129  Identities=16%  Similarity=0.223  Sum_probs=86.1

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh-----hcc---
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM-----KDR---  277 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~-----~~r---  277 (436)
                      .||..|+.|+|+++.++.+...+.            ....+..+||+||+|+|||++|..+|+.+...-     ...   
T Consensus        17 ~~P~~~~~l~Gh~~a~~~L~~a~~------------~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~   84 (351)
T PRK09112         17 PSPSENTRLFGHEEAEAFLAQAYR------------EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD   84 (351)
T ss_pred             CCCCchhhccCcHHHHHHHHHHHH------------cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence            689999999999999998877554            113455799999999999999999999886310     000   


Q ss_pred             cCCCC--------C-------------CCC--------------------------------------Ccceeecceeec
Q 013823          278 QNDGA--------S-------------VGS--------------------------------------NTKLTLSGILNF  298 (436)
Q Consensus       278 ~~~~~--------~-------------~~~--------------------------------------~~~~~~s~LL~~  298 (436)
                      ....+        +             ...                                      .+....+.||..
T Consensus        85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~  164 (351)
T PRK09112         85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKT  164 (351)
T ss_pred             CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHH
Confidence            00000        0             000                                      000001112333


Q ss_pred             ccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHH
Q 013823          299 IDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNY  353 (436)
Q Consensus       299 ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~  353 (436)
                      ++.    .....++|+.|+.++.+.|.++.  |+ .++.|+.|+.++...++.+.
T Consensus       165 LEE----pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~  212 (351)
T PRK09112        165 LEE----PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHL  212 (351)
T ss_pred             Hhc----CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHh
Confidence            322    12346777778889999999988  88 69999999999988888763

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=98.82  E-value=1.2e-08  Score=102.46  Aligned_cols=51  Identities=25%  Similarity=0.380  Sum_probs=42.2

Q ss_pred             CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+|.+|+|+++.|..|...+..             +...|+||.||+|||||++|+++++.+.
T Consensus        13 ~~pf~~ivGq~~~k~al~~~~~~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l~   63 (350)
T CHL00081         13 VFPFTAIVGQEEMKLALILNVID-------------PKIGGVMIMGDRGTGKSTTIRALVDLLP   63 (350)
T ss_pred             CCCHHHHhChHHHHHHHHHhccC-------------CCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence            34799999999999988665542             2346899999999999999999988774

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=98.79  E-value=5.2e-08  Score=108.93  Aligned_cols=133  Identities=19%  Similarity=0.220  Sum_probs=81.4

Q ss_pred             CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc----------hhh-
Q 013823          207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV----------EMK-  275 (436)
Q Consensus       207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~----------~~~-  275 (436)
                      .|..++.++|.++....+.+.+.             ...+.+++|+||||||||++|+.+|..+..          .+. 
T Consensus       182 r~~~ld~~iGr~~ei~~~i~~l~-------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~  248 (852)
T TIGR03345       182 REGKIDPVLGRDDEIRQMIDILL-------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS  248 (852)
T ss_pred             cCCCCCcccCCHHHHHHHHHHHh-------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence            46789999999987666655432             123468999999999999999999998731          011 


Q ss_pred             ----cccCCCCCCCC----------CcceeecceeecccCcccC--------------------CCCeEEEEEecCCcC-
Q 013823          276 ----DRQNDGASVGS----------NTKLTLSGILNFIDGLWSS--------------------CGDERIIVFTTNHKE-  320 (436)
Q Consensus       276 ----~r~~~~~~~~~----------~~~~~~s~LL~~ldg~~~~--------------------~~~~~ivI~TTN~~~-  320 (436)
                          .........+.          .....-...+-++|.+..-                    ..+++.+|+||+..+ 
T Consensus       249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~  328 (852)
T TIGR03345       249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEY  328 (852)
T ss_pred             eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHH
Confidence                00000000000          0000000111122222110                    013477888888643 


Q ss_pred             ----CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823          321 ----RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG  355 (436)
Q Consensus       321 ----~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~  355 (436)
                          .+|+||.|  ||. .|.++.|+.++...|++.+..
T Consensus       329 ~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~  364 (852)
T TIGR03345       329 KKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAP  364 (852)
T ss_pred             hhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHH
Confidence                48999999  995 799999999999999665543

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=98.79  E-value=2.2e-08  Score=100.43  Aligned_cols=55  Identities=27%  Similarity=0.314  Sum_probs=44.2

Q ss_pred             CCCc-ccccChhHHHHHHHHHHHHHhhHHHHHHhCC-CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          209 STFD-TLAMDPELKQMILDDLDRFLRRKEFYRRVGK-AWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       209 ~~~~-~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~-~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-|+ ++.|+++.++++.+++....        .|. ..++.++|+|||||||||+|++||+.++
T Consensus        47 ~~F~~~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~  103 (361)
T smart00763       47 RFFDHDFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLE  103 (361)
T ss_pred             cccchhccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4577 89999999999988776433        122 3356789999999999999999999886

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=98.76  E-value=2.3e-08  Score=110.04  Aligned_cols=129  Identities=20%  Similarity=0.200  Sum_probs=80.1

Q ss_pred             CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc---ch-------hhccc-
Q 013823          210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS---VE-------MKDRQ-  278 (436)
Q Consensus       210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---~~-------~~~r~-  278 (436)
                      .++.++|-++....+.+.+..             ..+.++||+||||||||++|+++|...-   ++       +.... 
T Consensus       184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~  250 (758)
T PRK11034        184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI  250 (758)
T ss_pred             CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence            577888888877777665441             1346789999999999999999998641   00       00000 


Q ss_pred             ----CCCCCCCCCc---cee------ecc---eeecccC--------------------cccCCCCeEEEEEecCCcC--
Q 013823          279 ----NDGASVGSNT---KLT------LSG---ILNFIDG--------------------LWSSCGDERIIVFTTNHKE--  320 (436)
Q Consensus       279 ----~~~~~~~~~~---~~~------~s~---LL~~ldg--------------------~~~~~~~~~ivI~TTN~~~--  320 (436)
                          ......+...   +..      ...   ++++++.                    +..  ..++.+|++||.++  
T Consensus       251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E~~  328 (758)
T PRK11034        251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFS  328 (758)
T ss_pred             HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHHHH
Confidence                0000000000   000      000   1122221                    111  13578899999765  


Q ss_pred             ---CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          321 ---RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       321 ---~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                         ..|+||.|  ||+ .|.++.|+.+++..|++.+...
T Consensus       329 ~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~  364 (758)
T PRK11034        329 NIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPK  364 (758)
T ss_pred             HHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHH
Confidence               57999999  996 7999999999999999976543

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.76  E-value=2.9e-08  Score=94.90  Aligned_cols=136  Identities=18%  Similarity=0.181  Sum_probs=72.4

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc-----hhhcccC
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV-----EMKDRQN  279 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~-----~~~~r~~  279 (436)
                      ..+..+||+.+-.. -.. ....+.....         .+..+.++||||||||||+|++++|+++..     .+.....
T Consensus        15 ~~~~~~fd~f~~~~-n~~-a~~~l~~~~~---------~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         15 LPDDETFASFYPGD-NDS-LLAALQNALR---------QEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK   83 (235)
T ss_pred             CCCcCCccccccCc-cHH-HHHHHHHHHh---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence            44556899976331 111 2233332221         112357999999999999999999987651     1100000


Q ss_pred             CCCCC---------------CC-----CcceeecceeecccCcccCCCCeEEEEEecCCcCC---CCccccCCCcee--E
Q 013823          280 DGASV---------------GS-----NTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER---IDPALLRPGRMD--V  334 (436)
Q Consensus       280 ~~~~~---------------~~-----~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~---lD~AllRpGR~d--~  334 (436)
                      .....               ++     .....-..|...++..... +...+++.+++.|..   +.|.|.+  |+.  .
T Consensus        84 ~~~~~~~~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~-g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~  160 (235)
T PRK08084         84 RAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYNRILES-GRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQ  160 (235)
T ss_pred             HhhhhHHHHHHhhhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHc-CCCeEEEeCCCChHHcCcccHHHHH--HHhCCc
Confidence            00000               00     0000000111222222111 111344445556555   5788988  986  8


Q ss_pred             EEEcCCCCHHHHHHHHHHHh
Q 013823          335 HINMSYCTVHGFKVLASNYL  354 (436)
Q Consensus       335 ~I~~~~p~~~~r~~i~~~~l  354 (436)
                      .+++..|+.+++..+++...
T Consensus       161 ~~~l~~~~~~~~~~~l~~~a  180 (235)
T PRK08084        161 IYKLQPLSDEEKLQALQLRA  180 (235)
T ss_pred             eeeecCCCHHHHHHHHHHHH
Confidence            89999999999998887644

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.76  E-value=4.4e-08  Score=105.99  Aligned_cols=52  Identities=21%  Similarity=0.445  Sum_probs=41.3

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      -.|.+|++++|.....+.+...+.             .+.+..++|+||||||||++|+++++..
T Consensus       148 ~rp~~~~~iiGqs~~~~~l~~~ia-------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~  199 (615)
T TIGR02903       148 LRPRAFSEIVGQERAIKALLAKVA-------------SPFPQHIILYGPPGVGKTTAARLALEEA  199 (615)
T ss_pred             cCcCcHHhceeCcHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            348899999999988887654332             1234679999999999999999998765

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=98.75  E-value=3.4e-08  Score=109.22  Aligned_cols=134  Identities=19%  Similarity=0.272  Sum_probs=83.9

Q ss_pred             ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCC---cc-eeeEeCCCCCChhHHHHHHHHHhcchhhcccCC--------
Q 013823          213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAW---KR-GYLLYGPPGTGKSSLIAAMANYLSVEMKDRQND--------  280 (436)
Q Consensus       213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~---~r-g~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~--------  280 (436)
                      .|+|+++.++.|.+.+..        .+.|...   |. .+||+||||||||++|+++|..++..+......        
T Consensus       455 ~v~GQ~~ai~~l~~~i~~--------~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~  526 (731)
T TIGR02639       455 KIFGQDEAIDSLVSSIKR--------SRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV  526 (731)
T ss_pred             ceeCcHHHHHHHHHHHHH--------HhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence            467777777777665542        2334322   34 489999999999999999999998432211110        


Q ss_pred             -------CCCCC-------------------------CCcceeecceeecccCccc--CC-----CCeEEEEEecCCcC-
Q 013823          281 -------GASVG-------------------------SNTKLTLSGILNFIDGLWS--SC-----GDERIIVFTTNHKE-  320 (436)
Q Consensus       281 -------~~~~~-------------------------~~~~~~~s~LL~~ldg~~~--~~-----~~~~ivI~TTN~~~-  320 (436)
                             +...+                         .......+.|++.+|.-.-  ..     -.+.+||+|||... 
T Consensus       527 ~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~  606 (731)
T TIGR02639       527 SRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGAS  606 (731)
T ss_pred             HHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchh
Confidence                   00000                         0111223345555553210  00     13478999998632 


Q ss_pred             ------------------------CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          321 ------------------------RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       321 ------------------------~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                                              .+.|.|+.  |||.+|.|...+.++...|++..+..
T Consensus       607 ~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~  664 (731)
T TIGR02639       607 EMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDE  664 (731)
T ss_pred             hhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence                                    14555655  99999999999999999999998853

>PRK10865 protein disaggregation chaperone; Provisional

Probab=98.73  E-value=2.4e-08  Score=111.82  Aligned_cols=134  Identities=20%  Similarity=0.209  Sum_probs=84.0

Q ss_pred             CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc----------chhhc
Q 013823          207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS----------VEMKD  276 (436)
Q Consensus       207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~----------~~~~~  276 (436)
                      .|..++.++|.++....+.+.+.             ...+.+++|+||||||||++|+++|..+.          ..+..
T Consensus       173 r~~~l~~vigr~~ei~~~i~iL~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~  239 (857)
T PRK10865        173 EQGKLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA  239 (857)
T ss_pred             hcCCCCcCCCCHHHHHHHHHHHh-------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence            46689999999887666655443             12346799999999999999999999873          11111


Q ss_pred             ccCC-----CCCCCCCc---cee-------ecceeecccCcccCC--------------------CCeEEEEEecCCcC-
Q 013823          277 RQND-----GASVGSNT---KLT-------LSGILNFIDGLWSSC--------------------GDERIIVFTTNHKE-  320 (436)
Q Consensus       277 r~~~-----~~~~~~~~---~~~-------~s~LL~~ldg~~~~~--------------------~~~~ivI~TTN~~~-  320 (436)
                      ....     ....+...   +..       ....+-++|.+..-.                    .+++.+|+||+..+ 
T Consensus       240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~  319 (857)
T PRK10865        240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEY  319 (857)
T ss_pred             EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHH
Confidence            0000     00000000   000       011122233221110                    13578899988876 


Q ss_pred             ----CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          321 ----RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       321 ----~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                          .+|+|+.|  ||+ .|.++.|+.+++..|++.....
T Consensus       320 r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~  356 (857)
T PRK10865        320 RQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER  356 (857)
T ss_pred             HHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence                48999999  997 5889999999999998876544

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=98.73  E-value=4.3e-08  Score=101.16  Aligned_cols=134  Identities=13%  Similarity=0.190  Sum_probs=74.3

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcc-----hhhcccC------------CCC-----------------CCCC--Ccce
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSV-----EMKDRQN------------DGA-----------------SVGS--NTKL  290 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~-----~~~~r~~------------~~~-----------------~~~~--~~~~  290 (436)
                      .+++||||||||||+|++|+|+++..     .......            ...                 +.+.  ....
T Consensus       137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~  216 (405)
T TIGR00362       137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKER  216 (405)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCCHH
Confidence            56899999999999999999998731     0000000            000                 0000  0000


Q ss_pred             eecceeecccCcccCCCCeEEEEEecCCcCC---CCccccCCCcee--EEEEcCCCCHHHHHHHHHHHhcccCCCCCcHH
Q 013823          291 TLSGILNFIDGLWSSCGDERIIVFTTNHKER---IDPALLRPGRMD--VHINMSYCTVHGFKVLASNYLGIKGKSHSLFG  365 (436)
Q Consensus       291 ~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~---lD~AllRpGR~d--~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~  365 (436)
                      +...|+..++.+...  +..+||.+++.|..   +++.+.+  ||.  ..++++.|+.++|..|++..+...+ .....+
T Consensus       217 ~~~~l~~~~n~~~~~--~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~-~~l~~e  291 (405)
T TIGR00362       217 TQEEFFHTFNALHEN--GKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEG-LELPDE  291 (405)
T ss_pred             HHHHHHHHHHHHHHC--CCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcC-CCCCHH
Confidence            111222333332221  12344444445554   5678887  996  5899999999999999999887653 222333


Q ss_pred             HHHhhhhcCCCCHHHHHHHH
Q 013823          366 EIEGLIQSTDVTPAEVAEEL  385 (436)
Q Consensus       366 ~i~~l~~~~~~tpaei~~~l  385 (436)
                      .+.-++....-+..++...+
T Consensus       292 ~l~~ia~~~~~~~r~l~~~l  311 (405)
T TIGR00362       292 VLEFIAKNIRSNVRELEGAL  311 (405)
T ss_pred             HHHHHHHhcCCCHHHHHHHH
Confidence            44444544444555544433

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=98.73  E-value=3.4e-08  Score=99.12  Aligned_cols=108  Identities=23%  Similarity=0.278  Sum_probs=68.6

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC----------------------------------------CCC
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA----------------------------------------SVG  285 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~----------------------------------------~~~  285 (436)
                      .+.+||-||||||||++|+++|..++.++......+.                                        +.+
T Consensus        43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn  122 (329)
T COG0714          43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN  122 (329)
T ss_pred             CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence            4779999999999999999999999944433222111                                        000


Q ss_pred             CCcceeecceeecccC-------cc-cCCCCeEEEEEecC-----CcCCCCccccCCCceeEEEEcCCC-CHHHHHHHHH
Q 013823          286 SNTKLTLSGILNFIDG-------LW-SSCGDERIIVFTTN-----HKERIDPALLRPGRMDVHINMSYC-TVHGFKVLAS  351 (436)
Q Consensus       286 ~~~~~~~s~LL~~ldg-------~~-~~~~~~~ivI~TTN-----~~~~lD~AllRpGR~d~~I~~~~p-~~~~r~~i~~  351 (436)
                      .....+.+.||..|+.       .. -.-....++|+|+|     ....|++|+++  ||...+.+++| ..++...+..
T Consensus       123 ra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~  200 (329)
T COG0714         123 RAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILA  200 (329)
T ss_pred             cCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHH
Confidence            1112233334444443       11 11123467888889     44568999999  99999999999 4455555555


Q ss_pred             HHhc
Q 013823          352 NYLG  355 (436)
Q Consensus       352 ~~l~  355 (436)
                      +...
T Consensus       201 ~~~~  204 (329)
T COG0714         201 RVGG  204 (329)
T ss_pred             hCcc
Confidence            5544

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=98.72  E-value=3.5e-08  Score=103.24  Aligned_cols=167  Identities=13%  Similarity=0.193  Sum_probs=88.0

Q ss_pred             ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch-----hhccc
Q 013823          204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE-----MKDRQ  278 (436)
Q Consensus       204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~-----~~~r~  278 (436)
                      .+.+..+|++.+..+.-+.. ...+..+...+      | ...++++||||||||||+|++++|+++...     .....
T Consensus       114 ~l~~~~tfd~fv~g~~n~~a-~~~~~~~~~~~------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~  185 (450)
T PRK00149        114 PLNPKYTFDNFVVGKSNRLA-HAAALAVAENP------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT  185 (450)
T ss_pred             CCCCCCcccccccCCCcHHH-HHHHHHHHhCc------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            35566689995533332222 22222222211      2 122569999999999999999999987411     00000


Q ss_pred             ------------CCCC-----------------CCC--CCcceeecceeecccCcccCCCCeEEEEEecCCcCC---CCc
Q 013823          279 ------------NDGA-----------------SVG--SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER---IDP  324 (436)
Q Consensus       279 ------------~~~~-----------------~~~--~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~---lD~  324 (436)
                                  ....                 +.+  .....+...|+..++.+...  ...+||.++..|..   +++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~--~~~iiits~~~p~~l~~l~~  263 (450)
T PRK00149        186 SEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEA--GKQIVLTSDRPPKELPGLEE  263 (450)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC--CCcEEEECCCCHHHHHHHHH
Confidence                        0000                 000  00000112233333333322  12344444445544   678


Q ss_pred             cccCCCcee--EEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHHHHH
Q 013823          325 ALLRPGRMD--VHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAE  383 (436)
Q Consensus       325 AllRpGR~d--~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpaei~~  383 (436)
                      .+..  ||.  ..++++.|+.++|..|++......+ .....+.+.-++....-+..++..
T Consensus       264 ~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~-~~l~~e~l~~ia~~~~~~~R~l~~  321 (450)
T PRK00149        264 RLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEG-IDLPDEVLEFIAKNITSNVRELEG  321 (450)
T ss_pred             HHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHcCcCCCHHHHHH
Confidence            8888  995  6899999999999999999886542 222333344444444444444433

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=98.70  E-value=4e-08  Score=97.47  Aligned_cols=44  Identities=14%  Similarity=0.126  Sum_probs=36.4

Q ss_pred             eEEEEEecCCcC------------CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHh
Q 013823          309 ERIIVFTTNHKE------------RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL  354 (436)
Q Consensus       309 ~~ivI~TTN~~~------------~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l  354 (436)
                      ...||+|+|..+            .+++|++.  ||-..+.++||+.+.-..|+....
T Consensus       178 ~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~  233 (327)
T TIGR01650       178 AFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKA  233 (327)
T ss_pred             CeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence            356899999865            36889999  999899999999999888877654

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PRK06620 hypothetical protein; Validated

Probab=98.69  E-value=8e-08  Score=90.61  Aligned_cols=139  Identities=14%  Similarity=0.165  Sum_probs=75.3

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCC-cceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCC
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAW-KRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASV  284 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~-~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~  284 (436)
                      .++-+|++++..+.-.. ....+.....      .++..+ .+.++||||||||||+|++++|+..+..+..........
T Consensus        10 ~~~~tfd~Fvvg~~N~~-a~~~~~~~~~------~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~~   82 (214)
T PRK06620         10 SSKYHPDEFIVSSSNDQ-AYNIIKNWQC------GFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEI   82 (214)
T ss_pred             CCCCCchhhEecccHHH-HHHHHHHHHH------ccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhchhH
Confidence            34458999765543222 2222222211      122222 367999999999999999999998874332211000000


Q ss_pred             -C--------CCcceeecceeecccCcccCCCCeEEEEEecCCcCC--CCccccCCCcee--EEEEcCCCCHHHHHHHHH
Q 013823          285 -G--------SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER--IDPALLRPGRMD--VHINMSYCTVHGFKVLAS  351 (436)
Q Consensus       285 -~--------~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~--lD~AllRpGR~d--~~I~~~~p~~~~r~~i~~  351 (436)
                       .        +.....-..|...++.+...  +..++|.++..|..  + |+|+.  |+.  ..+++..|+.+.+..+++
T Consensus        83 ~~~~d~lliDdi~~~~~~~lf~l~N~~~e~--g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~  157 (214)
T PRK06620         83 LEKYNAFIIEDIENWQEPALLHIFNIINEK--QKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIF  157 (214)
T ss_pred             HhcCCEEEEeccccchHHHHHHHHHHHHhc--CCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHH
Confidence             0        00000000111111222222  23556665555554  5 78887  885  478999999999999988


Q ss_pred             HHhcc
Q 013823          352 NYLGI  356 (436)
Q Consensus       352 ~~l~~  356 (436)
                      .....
T Consensus       158 k~~~~  162 (214)
T PRK06620        158 KHFSI  162 (214)
T ss_pred             HHHHH
Confidence            77653

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=98.69  E-value=7.1e-08  Score=96.81  Aligned_cols=45  Identities=18%  Similarity=0.206  Sum_probs=36.8

Q ss_pred             eEEEEEecCCcC-CCCccccCCCceeEEEEcCCCCH-HHHHHHHHHHhc
Q 013823          309 ERIIVFTTNHKE-RIDPALLRPGRMDVHINMSYCTV-HGFKVLASNYLG  355 (436)
Q Consensus       309 ~~ivI~TTN~~~-~lD~AllRpGR~d~~I~~~~p~~-~~r~~i~~~~l~  355 (436)
                      ..++|+|+|..+ .++++++.  ||..+|.+++|.. +++..|+++...
T Consensus       174 r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL~~~~~  220 (337)
T TIGR02030       174 RFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIVERRTE  220 (337)
T ss_pred             CEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHHHhhhh
Confidence            467778888555 69999999  9999999999987 778888887543

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=98.69  E-value=1.1e-07  Score=97.97  Aligned_cols=65  Identities=23%  Similarity=0.315  Sum_probs=44.9

Q ss_pred             CCcc-cccChhHHHHHHHHHHHHHhhHHHHHH--hCC-CCcceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          210 TFDT-LAMDPELKQMILDDLDRFLRRKEFYRR--VGK-AWKRGYLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       210 ~~~~-i~g~~~~k~~i~~~l~~~l~~~~~~~~--~g~-~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      .++. |+|+++.|+.|...+....+.-.....  -.. ....++||+||||||||++|+++|..++.++
T Consensus        68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf  136 (412)
T PRK05342         68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF  136 (412)
T ss_pred             HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence            4654 899999999997766543332211000  011 1346899999999999999999999888443

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=98.68  E-value=2.5e-08  Score=111.95  Aligned_cols=134  Identities=21%  Similarity=0.213  Sum_probs=82.0

Q ss_pred             CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc----------chhhc
Q 013823          207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS----------VEMKD  276 (436)
Q Consensus       207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~----------~~~~~  276 (436)
                      .|..++.++|.++....+.+.+.             ...+..++|+||||||||++++++|..+.          ..+..
T Consensus       168 ~~~~~~~~igr~~ei~~~~~~l~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~  234 (852)
T TIGR03346       168 REGKLDPVIGRDEEIRRTIQVLS-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA  234 (852)
T ss_pred             hCCCCCcCCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence            46689999999887666655443             12346789999999999999999999862          11110


Q ss_pred             ccC-----CCCCCCCCc---cee-------ecceeecccCcccC--------------------CCCeEEEEEecCCcC-
Q 013823          277 RQN-----DGASVGSNT---KLT-------LSGILNFIDGLWSS--------------------CGDERIIVFTTNHKE-  320 (436)
Q Consensus       277 r~~-----~~~~~~~~~---~~~-------~s~LL~~ldg~~~~--------------------~~~~~ivI~TTN~~~-  320 (436)
                      .+.     .....+...   +..       -...+-++|.+..-                    ...++.+|++||..+ 
T Consensus       235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~  314 (852)
T TIGR03346       235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEY  314 (852)
T ss_pred             eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHH
Confidence            000     000000000   000       00112222222100                    013477888888664 


Q ss_pred             ----CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          321 ----RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       321 ----~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                          .+|+|+.|  ||. .|.++.|+.+++..|++.+...
T Consensus       315 r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~  351 (852)
T TIGR03346       315 RKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKER  351 (852)
T ss_pred             HHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHH
Confidence                57999999  996 5899999999999999876544

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=98.65  E-value=1.3e-07  Score=97.33  Aligned_cols=46  Identities=30%  Similarity=0.522  Sum_probs=33.8

Q ss_pred             CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       211 ~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++++.+.++..+.+...+.               .++.++|+||||||||++|+++|..+.
T Consensus       174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~  219 (459)
T PRK11331        174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLT  219 (459)
T ss_pred             hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence            4555565555555543332               247899999999999999999999875

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=98.65  E-value=7.2e-08  Score=95.14  Aligned_cols=137  Identities=20%  Similarity=0.225  Sum_probs=77.7

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch---hhcccCCC
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE---MKDRQNDG  281 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~---~~~r~~~~  281 (436)
                      .-.|.+++|.+|++++..+ ...+...+.+.         ---+++|+||||||||+||+.||+.....   +...+...
T Consensus       131 rmRPktL~dyvGQ~hlv~q-~gllrs~ieq~---------~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~  200 (554)
T KOG2028|consen  131 RMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQN---------RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN  200 (554)
T ss_pred             hcCcchHHHhcchhhhcCc-chHHHHHHHcC---------CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc
Confidence            3457899999998877654 23233222211         12469999999999999999999877632   22222221


Q ss_pred             CCCC-------------CCcceeecceeecccCcccCC---------CCeEEEEEe-cCC-cCCCCccccCCCceeEEEE
Q 013823          282 ASVG-------------SNTKLTLSGILNFIDGLWSSC---------GDERIIVFT-TNH-KERIDPALLRPGRMDVHIN  337 (436)
Q Consensus       282 ~~~~-------------~~~~~~~s~LL~~ldg~~~~~---------~~~~ivI~T-TN~-~~~lD~AllRpGR~d~~I~  337 (436)
                      ....             ...++..--|+.++-.+....         +..+++|++ |-. .-.|..||+.  |+ .++.
T Consensus       201 a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlS--RC-~Vfv  277 (554)
T KOG2028|consen  201 AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLS--RC-RVFV  277 (554)
T ss_pred             cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHh--cc-ceeE
Confidence            1100             011111111222222221111         123666664 434 4479999999  88 4555


Q ss_pred             cCCCCHHHHHHHHHHHh
Q 013823          338 MSYCTVHGFKVLASNYL  354 (436)
Q Consensus       338 ~~~p~~~~r~~i~~~~l  354 (436)
                      +.....+....|+.+-+
T Consensus       278 LekL~~n~v~~iL~rai  294 (554)
T KOG2028|consen  278 LEKLPVNAVVTILMRAI  294 (554)
T ss_pred             eccCCHHHHHHHHHHHH
Confidence            66677778777877744

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=98.63  E-value=1.7e-07  Score=96.21  Aligned_cols=64  Identities=27%  Similarity=0.423  Sum_probs=42.6

Q ss_pred             CCcc-cccChhHHHHHHHHHHHHHhhHHHH-HH---hCCCC-cceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          210 TFDT-LAMDPELKQMILDDLDRFLRRKEFY-RR---VGKAW-KRGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       210 ~~~~-i~g~~~~k~~i~~~l~~~l~~~~~~-~~---~g~~~-~rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      .++. |+|+++.|+.+...+....+.-... ..   -++.. +.++||+||||||||++|+++|..++.+
T Consensus        74 ~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~p  143 (413)
T TIGR00382        74 HLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVP  143 (413)
T ss_pred             HhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCC
Confidence            3555 6899999998877664333221100 00   01111 3579999999999999999999998733

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=98.62  E-value=1.9e-08  Score=87.78  Aligned_cols=24  Identities=50%  Similarity=0.830  Sum_probs=22.9

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++||+||||||||++|+.+|..++
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~   24 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLG   24 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhh
Confidence            489999999999999999999998

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK08727 hypothetical protein; Validated

Probab=98.61  E-value=1.8e-07  Score=89.37  Aligned_cols=135  Identities=17%  Similarity=0.276  Sum_probs=74.2

Q ss_pred             ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch--------hh
Q 013823          204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE--------MK  275 (436)
Q Consensus       204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~--------~~  275 (436)
                      ......+|++.++.+.-  . ...+.....        | .....++|+||+|||||.|++|+|+++.-.        ..
T Consensus        11 ~~~~~~~f~~f~~~~~n--~-~~~~~~~~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~   78 (233)
T PRK08727         11 RYPSDQRFDSYIAAPDG--L-LAQLQALAA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ   78 (233)
T ss_pred             CCCCcCChhhccCCcHH--H-HHHHHHHHh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence            34555689997765542  1 111211111        1 123459999999999999999998875410        00


Q ss_pred             cccC---------CCC------CCCC--CcceeecceeecccCcccCCCCeEEEEEecC-CcCCC---CccccCCCce--
Q 013823          276 DRQN---------DGA------SVGS--NTKLTLSGILNFIDGLWSSCGDERIIVFTTN-HKERI---DPALLRPGRM--  332 (436)
Q Consensus       276 ~r~~---------~~~------~~~~--~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN-~~~~l---D~AllRpGR~--  332 (436)
                      ....         ...      +.+.  ........+++.++.....   +.-+|+|+| .|..+   +|++.+  ||  
T Consensus        79 ~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~---~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~  153 (233)
T PRK08727         79 AAAGRLRDALEALEGRSLVALDGLESIAGQREDEVALFDFHNRARAA---GITLLYTARQMPDGLALVLPDLRS--RLAQ  153 (233)
T ss_pred             HhhhhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHHHHHHHc---CCeEEEECCCChhhhhhhhHHHHH--HHhc
Confidence            0000         000      0000  0000111222333322211   233556555 66655   689988  86  


Q ss_pred             eEEEEcCCCCHHHHHHHHHHHhc
Q 013823          333 DVHINMSYCTVHGFKVLASNYLG  355 (436)
Q Consensus       333 d~~I~~~~p~~~~r~~i~~~~l~  355 (436)
                      ..+++++.|+.+++..++++...
T Consensus       154 ~~~~~l~~~~~e~~~~iL~~~a~  176 (233)
T PRK08727        154 CIRIGLPVLDDVARAAVLRERAQ  176 (233)
T ss_pred             CceEEecCCCHHHHHHHHHHHHH
Confidence            57889999999999999997543

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=98.61  E-value=3.2e-08  Score=91.87  Aligned_cols=46  Identities=33%  Similarity=0.517  Sum_probs=36.1

Q ss_pred             CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       211 ~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |.+|+|++..|..+.-...            |   ..++||+||||||||++|+++...|.
T Consensus         2 f~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP   47 (206)
T PF01078_consen    2 FSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLP   47 (206)
T ss_dssp             TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred             hhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence            8899999999998854333            3   36899999999999999999998776

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=98.58  E-value=3e-07  Score=91.68  Aligned_cols=152  Identities=13%  Similarity=0.175  Sum_probs=94.5

Q ss_pred             CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh---------------
Q 013823          210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM---------------  274 (436)
Q Consensus       210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~---------------  274 (436)
                      .|++|+|++++++.+...+..            ...+.++||+||+|+||+++|.++|+.+...-               
T Consensus         2 ~f~~iiGq~~~~~~L~~~i~~------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h   69 (314)
T PRK07399          2 LFANLIGQPLAIELLTAAIKQ------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH   69 (314)
T ss_pred             cHHHhCCHHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence            489999999999998876651            13356899999999999999999999875221               


Q ss_pred             ---hcccC-----C-------------------CC-----------------CC----------CCCcceeecceeeccc
Q 013823          275 ---KDRQN-----D-------------------GA-----------------SV----------GSNTKLTLSGILNFID  300 (436)
Q Consensus       275 ---~~r~~-----~-------------------~~-----------------~~----------~~~~~~~~s~LL~~ld  300 (436)
                         .-...     .                   ..                 ..          +.......+.||..|+
T Consensus        70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LE  149 (314)
T PRK07399         70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLE  149 (314)
T ss_pred             CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHh
Confidence               00000     0                   00                 00          0000011122444443


Q ss_pred             CcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHH
Q 013823          301 GLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAE  380 (436)
Q Consensus       301 g~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpae  380 (436)
                      .-    + ..++|++|+.++.|-|.+++  |+ ..|.|+.++.++...++.......    ....+...++..+.-+|..
T Consensus       150 EP----p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~----~~~~~~~~l~~~a~Gs~~~  217 (314)
T PRK07399        150 EP----G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEE----ILNINFPELLALAQGSPGA  217 (314)
T ss_pred             CC----C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccc----cchhHHHHHHHHcCCCHHH
Confidence            32    2 35778888899999999999  88 789999999999887777653221    1111233444444555554


Q ss_pred             HHHHH
Q 013823          381 VAEEL  385 (436)
Q Consensus       381 i~~~l  385 (436)
                      ..+.+
T Consensus       218 al~~l  222 (314)
T PRK07399        218 AIANI  222 (314)
T ss_pred             HHHHH
Confidence            44433

>PRK05642 DNA replication initiation factor; Validated

Probab=98.57  E-value=2e-07  Score=89.15  Aligned_cols=139  Identities=15%  Similarity=0.163  Sum_probs=74.6

Q ss_pred             ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc-----------
Q 013823          204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV-----------  272 (436)
Q Consensus       204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~-----------  272 (436)
                      ...+..+|++.+...  .....+.+..+...      .+....+.++||||+|||||.|++|+|+++..           
T Consensus        11 ~~~~~~tfdnF~~~~--~~~a~~~~~~~~~~------~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~   82 (234)
T PRK05642         11 RLRDDATFANYYPGA--NAAALGYVERLCEA------DAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA   82 (234)
T ss_pred             CCCCcccccccCcCC--hHHHHHHHHHHhhc------cccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence            345556899976332  12233333322211      11112367899999999999999999987531           


Q ss_pred             hhhc-------ccC-CCC----CCC--CCcceeecceeecccCcccCCCCeEEEEEecCCcCCC---CccccCCCce--e
Q 013823          273 EMKD-------RQN-DGA----SVG--SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERI---DPALLRPGRM--D  333 (436)
Q Consensus       273 ~~~~-------r~~-~~~----~~~--~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~l---D~AllRpGR~--d  333 (436)
                      ++..       .-. .+.    +.+  .........|...++.+...  +..+||.++..|..+   .|.+.+  ||  .
T Consensus        83 ~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~--g~~ilits~~~p~~l~~~~~~L~S--Rl~~g  158 (234)
T PRK05642         83 ELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDS--GRRLLLAASKSPRELPIKLPDLKS--RLTLA  158 (234)
T ss_pred             HHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhc--CCEEEEeCCCCHHHcCccCccHHH--HHhcC
Confidence            0000       000 000    000  00011112344444444322  224555554455433   688888  88  4


Q ss_pred             EEEEcCCCCHHHHHHHHHHHh
Q 013823          334 VHINMSYCTVHGFKVLASNYL  354 (436)
Q Consensus       334 ~~I~~~~p~~~~r~~i~~~~l  354 (436)
                      ..+.+..|+.+++..+++...
T Consensus       159 l~~~l~~~~~e~~~~il~~ka  179 (234)
T PRK05642        159 LVFQMRGLSDEDKLRALQLRA  179 (234)
T ss_pred             eeeecCCCCHHHHHHHHHHHH
Confidence            778889999999999988543

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=3.7e-07  Score=99.24  Aligned_cols=135  Identities=22%  Similarity=0.310  Sum_probs=88.9

Q ss_pred             cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCc----ceeeEeCCCCCChhHHHHHHHHHhc--------chhh---c
Q 013823          212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWK----RGYLLYGPPGTGKSSLIAAMANYLS--------VEMK---D  276 (436)
Q Consensus       212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~----rg~LL~GPpGtGKT~la~aiA~~l~--------~~~~---~  276 (436)
                      ..|+|+++..+.|.+.+.        ..+.|+..|    .++||.||.|+|||.||+++|..+.        +++.   .
T Consensus       491 ~rViGQd~AV~avs~aIr--------raRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E  562 (786)
T COG0542         491 KRVIGQDEAVEAVSDAIR--------RARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME  562 (786)
T ss_pred             cceeChHHHHHHHHHHHH--------HHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence            358899998888888776        344564332    3588999999999999999999998        1110   0


Q ss_pred             -----c--cCCCCCC-------------------------CCCcceeecceeecccCcccCC--C-----CeEEEEEecC
Q 013823          277 -----R--QNDGASV-------------------------GSNTKLTLSGILNFIDGLWSSC--G-----DERIIVFTTN  317 (436)
Q Consensus       277 -----r--~~~~~~~-------------------------~~~~~~~~s~LL~~ldg~~~~~--~-----~~~ivI~TTN  317 (436)
                           +  ..++.+.                         .......++-||+.+|.-.-..  |     .+.|||||||
T Consensus       563 kHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN  642 (786)
T COG0542         563 KHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSN  642 (786)
T ss_pred             HHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecc
Confidence                 0  1111110                         1112234566777776432211  1     2469999999


Q ss_pred             CcC----------------------------CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          318 HKE----------------------------RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       318 ~~~----------------------------~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                      -=.                            ...|+|+.  |+|.+|.|...+.+....|+...+..
T Consensus       643 ~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~  707 (786)
T COG0542         643 AGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNR  707 (786)
T ss_pred             cchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHH
Confidence            310                            12345555  99999999999999999999998854

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=98.55  E-value=6.2e-07  Score=90.96  Aligned_cols=133  Identities=17%  Similarity=0.192  Sum_probs=83.4

Q ss_pred             cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch---------hhccc----
Q 013823          212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE---------MKDRQ----  278 (436)
Q Consensus       212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~---------~~~r~----  278 (436)
                      +.++|-++..+.|...+...+.        | ..+.+++++||||||||++++++++.+.-.         .....    
T Consensus        15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~   85 (365)
T TIGR02928        15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL   85 (365)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence            5788999999988887764432        1 234579999999999999999999865310         00000    


Q ss_pred             -----------------CCCCCCCC---------------CcceeecceeecccCcc-----------------cCCCCe
Q 013823          279 -----------------NDGASVGS---------------NTKLTLSGILNFIDGLW-----------------SSCGDE  309 (436)
Q Consensus       279 -----------------~~~~~~~~---------------~~~~~~s~LL~~ldg~~-----------------~~~~~~  309 (436)
                                       ........               ......--+++++|.+.                 ...+..
T Consensus        86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~  165 (365)
T TIGR02928        86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAK  165 (365)
T ss_pred             CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCe
Confidence                             00000000               00000111233333331                 011245


Q ss_pred             EEEEEecCCcC---CCCccccCCCcee-EEEEcCCCCHHHHHHHHHHHhc
Q 013823          310 RIIVFTTNHKE---RIDPALLRPGRMD-VHINMSYCTVHGFKVLASNYLG  355 (436)
Q Consensus       310 ~ivI~TTN~~~---~lD~AllRpGR~d-~~I~~~~p~~~~r~~i~~~~l~  355 (436)
                      +.+|++||.++   .+++.+.+  ||. ..|+|+.++.++...++.+.+.
T Consensus       166 v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~  213 (365)
T TIGR02928       166 VGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE  213 (365)
T ss_pred             EEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence            78899999876   57888877  774 6799999999999999998875

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=98.55  E-value=1.6e-07  Score=86.44  Aligned_cols=102  Identities=17%  Similarity=0.270  Sum_probs=66.6

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhcch------------------------hh--cccCCCCC---------------
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLSVE------------------------MK--DRQNDGAS---------------  283 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~------------------------~~--~r~~~~~~---------------  283 (436)
                      .+..+|||||||+|||++|+++|+.+...                        +.  ........               
T Consensus        13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~   92 (188)
T TIGR00678        13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP   92 (188)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence            45779999999999999999999987521                        00  00000000               


Q ss_pred             ------------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHH
Q 013823          284 ------------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLAS  351 (436)
Q Consensus       284 ------------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~  351 (436)
                                  .+.......+.||..|+..    .+..++|++||.+..+++++.+  |+ ..++|+.|+.++...++.
T Consensus        93 ~~~~~kviiide~~~l~~~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~s--r~-~~~~~~~~~~~~~~~~l~  165 (188)
T TIGR00678        93 QESGRRVVIIEDAERMNEAAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRS--RC-QVLPFPPLSEEALLQWLI  165 (188)
T ss_pred             ccCCeEEEEEechhhhCHHHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHh--hc-EEeeCCCCCHHHHHHHHH
Confidence                        0000111223344455442    2347788888888999999998  87 589999999998777766


Q ss_pred             HH
Q 013823          352 NY  353 (436)
Q Consensus       352 ~~  353 (436)
                      ..
T Consensus       166 ~~  167 (188)
T TIGR00678       166 RQ  167 (188)
T ss_pred             Hc
Confidence            54

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PHA02244 ATPase-like protein

Probab=98.54  E-value=1.9e-07  Score=93.88  Aligned_cols=30  Identities=23%  Similarity=0.417  Sum_probs=26.0

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMK  275 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~  275 (436)
                      +..+||+||||||||++|++||..++.++.
T Consensus       119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv  148 (383)
T PHA02244        119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFY  148 (383)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            356999999999999999999999985443

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=98.54  E-value=3e-07  Score=95.85  Aligned_cols=46  Identities=15%  Similarity=0.331  Sum_probs=36.1

Q ss_pred             EEEEEecCC-cC---CCCccccCCCcee--EEEEcCCCCHHHHHHHHHHHhccc
Q 013823          310 RIIVFTTNH-KE---RIDPALLRPGRMD--VHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       310 ~ivI~TTN~-~~---~lD~AllRpGR~d--~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      ..+|+|+|. |.   .+++.+.+  ||.  ..+.++.|+.+++..++++.....
T Consensus       236 k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~  287 (445)
T PRK12422        236 KLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEAL  287 (445)
T ss_pred             CcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHc
Confidence            356666664 43   56788988  995  899999999999999999887654

>PRK10865 protein disaggregation chaperone; Provisional

Probab=98.54  E-value=5.4e-07  Score=101.10  Aligned_cols=136  Identities=18%  Similarity=0.271  Sum_probs=84.1

Q ss_pred             CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCC---Cc-ceeeEeCCCCCChhHHHHHHHHHhc---chhh--------
Q 013823          211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA---WK-RGYLLYGPPGTGKSSLIAAMANYLS---VEMK--------  275 (436)
Q Consensus       211 ~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~---~~-rg~LL~GPpGtGKT~la~aiA~~l~---~~~~--------  275 (436)
                      +..|+|++...+.|...+....        .|..   .| ..+||+||||||||++|++||+.+.   ..+.        
T Consensus       567 ~~~viGQ~~ai~~l~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~  638 (857)
T PRK10865        567 HHRVIGQNEAVEAVSNAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM  638 (857)
T ss_pred             CCeEeCCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence            5578899999888888776432        2222   12 3589999999999999999999874   0010        


Q ss_pred             cc------c-CCCCCCC-------------------------CCcceeecceeecccCcc-cC-C-----CCeEEEEEec
Q 013823          276 DR------Q-NDGASVG-------------------------SNTKLTLSGILNFIDGLW-SS-C-----GDERIIVFTT  316 (436)
Q Consensus       276 ~r------~-~~~~~~~-------------------------~~~~~~~s~LL~~ldg~~-~~-~-----~~~~ivI~TT  316 (436)
                      ..      - ..+...+                         .......+.|++.+|.-. .. .     -.+.+||+||
T Consensus       639 ~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TS  718 (857)
T PRK10865        639 EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTS  718 (857)
T ss_pred             hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeC
Confidence            00      0 0000000                         001112233444443211 10 0     1235899999


Q ss_pred             CCc-------------------------CCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          317 NHK-------------------------ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       317 N~~-------------------------~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                      |..                         ..+.|+|+.  |+|.+|.|.+++.+....|+..++..
T Consensus       719 N~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~  781 (857)
T PRK10865        719 NLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR  781 (857)
T ss_pred             CcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence            972                         124467777  99999999999999999999988854

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=98.53  E-value=1.6e-07  Score=94.38  Aligned_cols=124  Identities=18%  Similarity=0.269  Sum_probs=81.2

Q ss_pred             CCccccc-ChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh-------------
Q 013823          210 TFDTLAM-DPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK-------------  275 (436)
Q Consensus       210 ~~~~i~g-~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~-------------  275 (436)
                      .|++|.| ++.+++.+...+.            ....+..+|||||+|+||+++|+++|+.+...-.             
T Consensus         3 ~~~~i~~~q~~~~~~L~~~~~------------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~   70 (329)
T PRK08058          3 TWEQLTALQPVVVKMLQNSIA------------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK   70 (329)
T ss_pred             cHHHHHhhHHHHHHHHHHHHH------------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence            4778888 7778887766543            1235678999999999999999999998752110             


Q ss_pred             -----------cc--cCCCC-----------------C----------CCCCcceeecceeecccCcccCCCCeEEEEEe
Q 013823          276 -----------DR--QNDGA-----------------S----------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFT  315 (436)
Q Consensus       276 -----------~r--~~~~~-----------------~----------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~T  315 (436)
                                 ..  .....                 .          .+.......+.||..|+.-    ++..++|++
T Consensus        71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP----p~~~~~Il~  146 (329)
T PRK08058         71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEP----SGGTTAILL  146 (329)
T ss_pred             HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCC----CCCceEEEE
Confidence                       00  00000                 0          0001111223355555443    345788889


Q ss_pred             cCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHH
Q 013823          316 TNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASN  352 (436)
Q Consensus       316 TN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~  352 (436)
                      |+.+..|-|++++  |+ ..++|+.|+.++....+..
T Consensus       147 t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~  180 (329)
T PRK08058        147 TENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE  180 (329)
T ss_pred             eCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence            9999999999998  88 6889999999886555543

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=98.52  E-value=1.6e-07  Score=97.81  Aligned_cols=166  Identities=15%  Similarity=0.225  Sum_probs=84.5

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch-----------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE-----------  273 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~-----------  273 (436)
                      +.+..+|++.+..+.-.... ..+..+...+      |  +..+++||||||||||.|++|+|+++.-.           
T Consensus        98 l~~~~tFdnFv~g~~n~~a~-~~~~~~~~~~------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~  168 (440)
T PRK14088         98 LNPDYTFENFVVGPGNSFAY-HAALEVAKNP------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS  168 (440)
T ss_pred             CCCCCcccccccCCchHHHH-HHHHHHHhCc------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence            45556899976433332222 2222222211      1  23569999999999999999999986310           


Q ss_pred             --hh----cc-cCCC-----------C------CCCC--CcceeecceeecccCcccCCCCeEEEEEecCCcCC---CCc
Q 013823          274 --MK----DR-QNDG-----------A------SVGS--NTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER---IDP  324 (436)
Q Consensus       274 --~~----~r-~~~~-----------~------~~~~--~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~---lD~  324 (436)
                        +.    .. ....           .      +.+.  ....+...|+..++.+...  ...+||.+.+.|..   +++
T Consensus       169 ~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~--~k~iIitsd~~p~~l~~l~~  246 (440)
T PRK14088        169 EKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDS--GKQIVICSDREPQKLSEFQD  246 (440)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHc--CCeEEEECCCCHHHHHHHHH
Confidence              00    00 0000           0      0000  0000011222223333222  12344444456655   456


Q ss_pred             cccCCCce--eEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHHHHHH
Q 013823          325 ALLRPGRM--DVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEE  384 (436)
Q Consensus       325 AllRpGR~--d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpaei~~~  384 (436)
                      .+.+  ||  ...+.+..|+.+.|..|+++.....+ .....+.+.-++....-+..++...
T Consensus       247 rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~-~~l~~ev~~~Ia~~~~~~~R~L~g~  305 (440)
T PRK14088        247 RLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEH-GELPEEVLNFVAENVDDNLRRLRGA  305 (440)
T ss_pred             HHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHhccccCHHHHHHH
Confidence            7777  77  46789999999999999999876542 1222233333444433344444433

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.52  E-value=1.1e-07  Score=106.39  Aligned_cols=130  Identities=19%  Similarity=0.198  Sum_probs=80.4

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc----------chhhccc
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS----------VEMKDRQ  278 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~----------~~~~~r~  278 (436)
                      ..++.++|.++..+.+.+.+.             ...+++++|+||||||||++|+++|..+.          ..+...+
T Consensus       176 ~~~~~~igr~~ei~~~~~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~  242 (821)
T CHL00095        176 GNLDPVIGREKEIERVIQILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD  242 (821)
T ss_pred             CCCCCCCCcHHHHHHHHHHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence            468889999888888877554             23457899999999999999999999874          1111110


Q ss_pred             C-----CCCCCCCCc---cee------ecceeecccCcc---cC-----------------CCCeEEEEEecCCcC----
Q 013823          279 N-----DGASVGSNT---KLT------LSGILNFIDGLW---SS-----------------CGDERIIVFTTNHKE----  320 (436)
Q Consensus       279 ~-----~~~~~~~~~---~~~------~s~LL~~ldg~~---~~-----------------~~~~~ivI~TTN~~~----  320 (436)
                      .     .....+...   +..      ....+-++|.+.   ..                 ..+++.+|++|+..+    
T Consensus       243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~  322 (821)
T CHL00095        243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKH  322 (821)
T ss_pred             HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHH
Confidence            0     000000000   000      011222333331   10                 012467888888654    


Q ss_pred             -CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHh
Q 013823          321 -RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL  354 (436)
Q Consensus       321 -~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l  354 (436)
                       ..|+++.|  ||. .|.++.|+.++...|++...
T Consensus       323 ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~  354 (821)
T CHL00095        323 IEKDPALER--RFQ-PVYVGEPSVEETIEILFGLR  354 (821)
T ss_pred             HhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHH
Confidence             57999999  996 57999999999888876543

>PRK09087 hypothetical protein; Validated

Probab=98.52  E-value=3.6e-07  Score=86.90  Aligned_cols=107  Identities=12%  Similarity=0.178  Sum_probs=64.4

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC------CC-----C--CCcceeecceeecccCcccCCCCeEEEE
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA------SV-----G--SNTKLTLSGILNFIDGLWSSCGDERIIV  313 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~------~~-----~--~~~~~~~s~LL~~ldg~~~~~~~~~ivI  313 (436)
                      ..++|+||+|+|||+|++++|...+...........      ..     +  ......-..|...++.+...  +..+||
T Consensus        45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n~~~~~--g~~ili  122 (226)
T PRK09087         45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDIDAGGFDETGLFHLINSVRQA--GTSLLM  122 (226)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCCCCCCCHHHHHHHHHHHHhC--CCeEEE
Confidence            348999999999999999999877643222210000      00     0  00000112244444444332  123444


Q ss_pred             EecCCcCC---CCccccCCCcee--EEEEcCCCCHHHHHHHHHHHhccc
Q 013823          314 FTTNHKER---IDPALLRPGRMD--VHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       314 ~TTN~~~~---lD~AllRpGR~d--~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      .++..|..   ..|.++.  |+.  ..+++..|+.+.+..++++.+...
T Consensus       123 ts~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~  169 (226)
T PRK09087        123 TSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADR  169 (226)
T ss_pred             ECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHc
Confidence            44444442   3578888  885  889999999999999999988654

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=98.50  E-value=2.2e-08  Score=85.94  Aligned_cols=83  Identities=29%  Similarity=0.346  Sum_probs=43.7

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC----------------------------------CCCCCcceeec
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA----------------------------------SVGSNTKLTLS  293 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~----------------------------------~~~~~~~~~~s  293 (436)
                      .+||.|+||+|||++|+++|..++..+...+..+.                                  +.+....++.+
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrappktQs   80 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPPKTQS   80 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-HHHHH
T ss_pred             CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCHHHHH
Confidence            37999999999999999999999955433222111                                  11112233445


Q ss_pred             ceeeccc-------CcccCCCCeEEEEEecCCcC-----CCCccccCCCce
Q 013823          294 GILNFID-------GLWSSCGDERIIVFTTNHKE-----RIDPALLRPGRM  332 (436)
Q Consensus       294 ~LL~~ld-------g~~~~~~~~~ivI~TTN~~~-----~lD~AllRpGR~  332 (436)
                      .||..|.       |..-...+..+||+|-|..+     .|++|++.  ||
T Consensus        81 AlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF  129 (131)
T PF07726_consen   81 ALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF  129 (131)
T ss_dssp             HHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred             HHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence            5555553       22223345678999999877     68888887  87

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.50  E-value=1.8e-07  Score=80.46  Aligned_cols=26  Identities=58%  Similarity=0.922  Sum_probs=23.9

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      ..++++++||||||||++++.+++.+
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            34689999999999999999999988

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=98.47  E-value=1e-06  Score=88.29  Aligned_cols=102  Identities=16%  Similarity=0.250  Sum_probs=67.2

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhcchhhc------------------------ccCCC----CC-------------
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD------------------------RQNDG----AS-------------  283 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~------------------------r~~~~----~~-------------  283 (436)
                      .+.++||+||+|+||+++|.++|+.+...-..                        .....    ..             
T Consensus        21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~  100 (328)
T PRK05707         21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ  100 (328)
T ss_pred             cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence            45689999999999999999999988632100                        00000    00             


Q ss_pred             --------------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHH
Q 013823          284 --------------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVL  349 (436)
Q Consensus       284 --------------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i  349 (436)
                                    .+.......+.||+.|+.-    .+..++|++|+.++.|.|.+++  |+ ..+.|+.|+.++....
T Consensus       101 ~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP----p~~~~fiL~t~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~  173 (328)
T PRK05707        101 TAQLGGRKVVLIEPAEAMNRNAANALLKSLEEP----SGDTVLLLISHQPSRLLPTIKS--RC-QQQACPLPSNEESLQW  173 (328)
T ss_pred             ccccCCCeEEEECChhhCCHHHHHHHHHHHhCC----CCCeEEEEEECChhhCcHHHHh--hc-eeeeCCCcCHHHHHHH
Confidence                          0000111222344444332    3458899999999999999999  99 4589999999887666


Q ss_pred             HHHH
Q 013823          350 ASNY  353 (436)
Q Consensus       350 ~~~~  353 (436)
                      +...
T Consensus       174 L~~~  177 (328)
T PRK05707        174 LQQA  177 (328)
T ss_pred             HHHh
Confidence            6543

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.46  E-value=9.8e-07  Score=98.85  Aligned_cols=52  Identities=29%  Similarity=0.461  Sum_probs=38.8

Q ss_pred             cccccChhHHHHHHHHHHHHHhhHHHHHHhCCC---Ccc-eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA---WKR-GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~---~~r-g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.|+|+++.++.|...+...        +.|+.   .|. .+||+||||||||++|+++|..+.
T Consensus       509 ~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~  564 (821)
T CHL00095        509 KRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF  564 (821)
T ss_pred             CcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence            45789888888887766532        23322   122 489999999999999999999873

>PRK13531 regulatory ATPase RavA; Provisional

Probab=98.45  E-value=5e-07  Score=93.83  Aligned_cols=106  Identities=19%  Similarity=0.277  Sum_probs=61.4

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcch--hh---ccc--C--------------CCC------------------CCCC
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVE--MK---DRQ--N--------------DGA------------------SVGS  286 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~--~~---~r~--~--------------~~~------------------~~~~  286 (436)
                      ...+||+||||||||++|+++|...+..  +.   .+.  .              .+.                  +...
T Consensus        39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r  118 (498)
T PRK13531         39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK  118 (498)
T ss_pred             CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence            4679999999999999999999876410  00   000  0              000                  0011


Q ss_pred             Ccceeecceeeccc-CcccCCC-----CeEEEEEecCCcCC---CCccccCCCceeEEEEcCCCC-HHHHHHHHHHH
Q 013823          287 NTKLTLSGILNFID-GLWSSCG-----DERIIVFTTNHKER---IDPALLRPGRMDVHINMSYCT-VHGFKVLASNY  353 (436)
Q Consensus       287 ~~~~~~s~LL~~ld-g~~~~~~-----~~~ivI~TTN~~~~---lD~AllRpGR~d~~I~~~~p~-~~~r~~i~~~~  353 (436)
                      .+..+.+.||..|. +.....+     +.+++++|||....   ..+|+..  ||-..|.+|+|+ .++...|+...
T Consensus       119 asp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~  193 (498)
T PRK13531        119 AGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ  193 (498)
T ss_pred             CCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence            12223333444442 1111111     22577778884321   2348999  999999999997 46667777664

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=98.44  E-value=6.3e-07  Score=95.68  Aligned_cols=106  Identities=13%  Similarity=0.249  Sum_probs=64.7

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcc-----h--------hh----cc-cCCC----------C--------CCCCCcce
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSV-----E--------MK----DR-QNDG----------A--------SVGSNTKL  290 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~-----~--------~~----~r-~~~~----------~--------~~~~~~~~  290 (436)
                      ..++|||++|||||.|++|||+++..     .        +.    .. ....          .        ..-.....
T Consensus       315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~  394 (617)
T PRK14086        315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKES  394 (617)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHH
Confidence            45999999999999999999998731     0        00    00 0000          0        00000001


Q ss_pred             eecceeecccCcccCCCCeEEEEEecCCc----CCCCccccCCCce--eEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          291 TLSGILNFIDGLWSSCGDERIIVFTTNHK----ERIDPALLRPGRM--DVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       291 ~~s~LL~~ldg~~~~~~~~~ivI~TTN~~----~~lD~AllRpGR~--d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      +-..|++.++.+...   +.-||+|+|.+    ..+++.|.+  ||  ...+++..|+.+.|..|++......
T Consensus       395 tqeeLF~l~N~l~e~---gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r  462 (617)
T PRK14086        395 TQEEFFHTFNTLHNA---NKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQE  462 (617)
T ss_pred             HHHHHHHHHHHHHhc---CCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhc
Confidence            112233444444322   13355677754    357788888  88  5677999999999999999987665

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=98.44  E-value=9.3e-07  Score=99.38  Aligned_cols=134  Identities=22%  Similarity=0.317  Sum_probs=81.9

Q ss_pred             cccccChhHHHHHHHHHHHHHhhHHHHHHhCCC----CcceeeEeCCCCCChhHHHHHHHHHhcc--------hhhc---
Q 013823          212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYLSV--------EMKD---  276 (436)
Q Consensus       212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~----~~rg~LL~GPpGtGKT~la~aiA~~l~~--------~~~~---  276 (436)
                      ..|+|++...+.|.+.+....        .|+.    +...+||+||||||||++|++||..+.-        +...   
T Consensus       565 ~~v~GQ~~av~~v~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~  636 (852)
T TIGR03346       565 ERVVGQDEAVEAVSDAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME  636 (852)
T ss_pred             cccCCChHHHHHHHHHHHHHh--------ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence            458899998888888776432        2222    2235899999999999999999998741        1100   


Q ss_pred             -----c--cCCCCCCC-------------------------CCcceeecceeecccCcc-c-CC-----CCeEEEEEecC
Q 013823          277 -----R--QNDGASVG-------------------------SNTKLTLSGILNFIDGLW-S-SC-----GDERIIVFTTN  317 (436)
Q Consensus       277 -----r--~~~~~~~~-------------------------~~~~~~~s~LL~~ldg~~-~-~~-----~~~~ivI~TTN  317 (436)
                           +  ...+...+                         .......+.||+.+|.-. . ..     -.+.+||+|||
T Consensus       637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn  716 (852)
T TIGR03346       637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN  716 (852)
T ss_pred             cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCC
Confidence                 0  00000000                         001112233444443211 1 00     13478999999


Q ss_pred             CcCC-------------------------CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823          318 HKER-------------------------IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG  355 (436)
Q Consensus       318 ~~~~-------------------------lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~  355 (436)
                      ....                         +.|.|+-  |+|.+|.|.+++.+....|+...+.
T Consensus       717 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~  777 (852)
T TIGR03346       717 LGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG  777 (852)
T ss_pred             cchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence            7221                         2345555  9999999999999999999988875

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=98.43  E-value=6.9e-07  Score=100.04  Aligned_cols=52  Identities=25%  Similarity=0.371  Sum_probs=40.0

Q ss_pred             cccccChhHHHHHHHHHHHHHhhHHHHHHhCC---CCcce-eeEeCCCCCChhHHHHHHHHHhc
Q 013823          212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGK---AWKRG-YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~---~~~rg-~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..|+|+++..+.|.+.+....        .|+   ..|.| +||+||||||||.+|+++|..+.
T Consensus       566 ~~v~GQ~~Av~~v~~~i~~~~--------~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~  621 (852)
T TIGR03345       566 ERVIGQDHALEAIAERIRTAR--------AGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY  621 (852)
T ss_pred             CeEcChHHHHHHHHHHHHHHh--------cCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            357899998888888776432        232   23444 79999999999999999999884

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=98.42  E-value=3.6e-06  Score=92.04  Aligned_cols=47  Identities=15%  Similarity=0.198  Sum_probs=37.2

Q ss_pred             CeEEEEEecCC---cCCCCccccCCCceeE-EEEcCCCCHHHHHHHHHHHhcc
Q 013823          308 DERIIVFTTNH---KERIDPALLRPGRMDV-HINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       308 ~~~ivI~TTN~---~~~lD~AllRpGR~d~-~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                      ..++||+++|.   ++.|+|.+..  ||.. .|.|++++.++...|+..-+..
T Consensus       901 SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~  951 (1164)
T PTZ00112        901 SKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLEN  951 (1164)
T ss_pred             CeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHh
Confidence            45788899985   5677888877  7653 4889999999999999887753

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=98.38  E-value=4.7e-06  Score=85.43  Aligned_cols=51  Identities=31%  Similarity=0.462  Sum_probs=37.7

Q ss_pred             CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       211 ~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      .+.+++-++..++|...+...+.        | ..+..+++|||||||||++++.+++++
T Consensus        29 P~~l~~Re~e~~~l~~~l~~~~~--------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l   79 (394)
T PRK00411         29 PENLPHREEQIEELAFALRPALR--------G-SRPLNVLIYGPPGTGKTTTVKKVFEEL   79 (394)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhC--------C-CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            35577777777777666653332        1 234568999999999999999999877

>TIGR00602 rad24 checkpoint protein rad24

Probab=98.33  E-value=8.4e-06  Score=88.06  Aligned_cols=67  Identities=27%  Similarity=0.355  Sum_probs=51.8

Q ss_pred             CCccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          198 GMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       198 ~~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      ..|.  ..-.|.++++|+++++..+.|...+....        ++....+.++|+||||||||++++++|++++..+
T Consensus        72 ~pW~--eKyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~  138 (637)
T TIGR00602        72 EPWV--EKYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQV  138 (637)
T ss_pred             CchH--HHhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHH
Confidence            3564  47789999999999999888777655321        1223445699999999999999999999998544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=98.33  E-value=1.2e-06  Score=95.25  Aligned_cols=48  Identities=27%  Similarity=0.353  Sum_probs=38.0

Q ss_pred             CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      +|..|+|++.+|..+.-.+..             +...|+||+||||||||++|++|++.+
T Consensus         2 pf~~ivGq~~~~~al~~~av~-------------~~~g~vli~G~~GtgKs~lar~l~~~l   49 (633)
T TIGR02442         2 PFTAIVGQEDLKLALLLNAVD-------------PRIGGVLIRGEKGTAKSTAARGLAALL   49 (633)
T ss_pred             CcchhcChHHHHHHHHHHhhC-------------CCCCeEEEEcCCCCcHHHHHHHHHHhC
Confidence            588999999988776443321             112579999999999999999999988

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.33  E-value=1.1e-06  Score=83.11  Aligned_cols=107  Identities=17%  Similarity=0.291  Sum_probs=60.0

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcch-------------hhc-----c-c-----------CCCC----CCC--CCcce
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVE-------------MKD-----R-Q-----------NDGA----SVG--SNTKL  290 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~-------------~~~-----r-~-----------~~~~----~~~--~~~~~  290 (436)
                      ..++||||+|+|||.|.+|+++++...             +..     . .           ..+.    +.+  .....
T Consensus        35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~  114 (219)
T PF00308_consen   35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQR  114 (219)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchH
Confidence            458999999999999999999986410             000     0 0           0000    000  01111


Q ss_pred             eecceeecccCcccCCCCeEEEEEecCCcCCC---CccccCCCcee--EEEEcCCCCHHHHHHHHHHHhccc
Q 013823          291 TLSGILNFIDGLWSSCGDERIIVFTTNHKERI---DPALLRPGRMD--VHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       291 ~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~l---D~AllRpGR~d--~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      +...|...++.+...  +..+|+.+...|..+   ++.|..  ||.  ..+++..|+.+.|..++.......
T Consensus       115 ~q~~lf~l~n~~~~~--~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~  182 (219)
T PF00308_consen  115 TQEELFHLFNRLIES--GKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKER  182 (219)
T ss_dssp             HHHHHHHHHHHHHHT--TSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhh--CCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHh
Confidence            223344444444433  224555554566654   566666  774  588999999999999999988765

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=98.32  E-value=3.4e-06  Score=89.87  Aligned_cols=142  Identities=20%  Similarity=0.246  Sum_probs=87.5

Q ss_pred             cccCCCCCCcccccChhHHHHHHHHHHHHHh---h--------------HHHHH----HhCCCCcceeeEeCCCCCChhH
Q 013823          203 INLEHPSTFDTLAMDPELKQMILDDLDRFLR---R--------------KEFYR----RVGKAWKRGYLLYGPPGTGKSS  261 (436)
Q Consensus       203 ~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~---~--------------~~~~~----~~g~~~~rg~LL~GPpGtGKT~  261 (436)
                      |..-.|..|.++.+++.+-..+..++..+-.   +              ++.+.    ..+.|.++-+||+||||-||||
T Consensus       262 Vdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTT  341 (877)
T KOG1969|consen  262 VDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTT  341 (877)
T ss_pred             ecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhH
Confidence            4567789999999999998888777764311   1              01111    1235666779999999999999


Q ss_pred             HHHHHHHHhcchhhcccCCCCCCC-----------------CCcceeecceeecccCcc--------------------c
Q 013823          262 LIAAMANYLSVEMKDRQNDGASVG-----------------SNTKLTLSGILNFIDGLW--------------------S  304 (436)
Q Consensus       262 la~aiA~~l~~~~~~r~~~~~~~~-----------------~~~~~~~s~LL~~ldg~~--------------------~  304 (436)
                      ||+.||...|....+...++....                 +...+=..-++.+|||-.                    .
T Consensus       342 LAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gk  421 (877)
T KOG1969|consen  342 LAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGK  421 (877)
T ss_pred             HHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHHHHHHHHHHHHhhcchhhcC
Confidence            999999999955544433322100                 000111122455566532                    0


Q ss_pred             CCCC------------eEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHH
Q 013823          305 SCGD------------ERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGF  346 (436)
Q Consensus       305 ~~~~------------~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r  346 (436)
                      ..+.            -+-||+.+|.  ..-|||.----+-..|.|+.|.....
T Consensus       422 q~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~f~~p~~s~L  473 (877)
T KOG1969|consen  422 QAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIAFVPPSQSRL  473 (877)
T ss_pred             cccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEEecCCChhHH
Confidence            0000            1468888885  45677741125788999999888653

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=98.31  E-value=4.8e-06  Score=83.79  Aligned_cols=43  Identities=12%  Similarity=0.203  Sum_probs=37.0

Q ss_pred             CCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHH
Q 013823          307 GDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASN  352 (436)
Q Consensus       307 ~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~  352 (436)
                      ++.+++|++|++++.|.|.+++  |+ ..|.|+.|+.++....+..
T Consensus       160 p~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~  202 (342)
T PRK06964        160 PPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAA  202 (342)
T ss_pred             CcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHH
Confidence            3558899999999999999999  99 7899999999887766654

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=98.30  E-value=1.5e-05  Score=78.88  Aligned_cols=53  Identities=34%  Similarity=0.475  Sum_probs=40.3

Q ss_pred             CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       211 ~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      =|-++|+.+.++..--.+. .+       +-|.-..||+|+.||||||||.||-+||.+||
T Consensus        38 ~dG~VGQ~~AReAaGvIv~-mi-------k~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG   90 (450)
T COG1224          38 GDGLVGQEEAREAAGVIVK-MI-------KQGKMAGRGILIVGPPGTGKTALAMGIARELG   90 (450)
T ss_pred             CCcccchHHHHHhhhHHHH-HH-------HhCcccccEEEEECCCCCcHHHHHHHHHHHhC
Confidence            3568899888876422222 22       22445679999999999999999999999999

>smart00350 MCM minichromosome maintenance proteins

Probab=98.29  E-value=1.4e-06  Score=92.62  Aligned_cols=46  Identities=13%  Similarity=0.179  Sum_probs=37.0

Q ss_pred             eEEEEEecCCcC-------------CCCccccCCCceeEEEE-cCCCCHHHHHHHHHHHhcc
Q 013823          309 ERIIVFTTNHKE-------------RIDPALLRPGRMDVHIN-MSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       309 ~~ivI~TTN~~~-------------~lD~AllRpGR~d~~I~-~~~p~~~~r~~i~~~~l~~  356 (436)
                      ..-||+|+|..+             .|++++++  |||.... .++|+.+....|+++.+..
T Consensus       343 ~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~  402 (509)
T smart00350      343 RCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDL  402 (509)
T ss_pred             CcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHh
Confidence            356889999653             59999999  9998654 5899999999999987653

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=98.28  E-value=1.2e-06  Score=86.98  Aligned_cols=97  Identities=21%  Similarity=0.234  Sum_probs=60.0

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcc------------------------hhhcccCCCCCC-----------------C
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSV------------------------EMKDRQNDGASV-----------------G  285 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~------------------------~~~~r~~~~~~~-----------------~  285 (436)
                      ..+||+||||||||++|.++|+++.-                        ++.....++...                 .
T Consensus        25 halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~  104 (325)
T COG0470          25 HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSES  104 (325)
T ss_pred             ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccC
Confidence            47999999999999999999998882                        111111111100                 0


Q ss_pred             CCcceeecceeecccCcc-----------cCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHH
Q 013823          286 SNTKLTLSGILNFIDGLW-----------SSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGF  346 (436)
Q Consensus       286 ~~~~~~~s~LL~~ldg~~-----------~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r  346 (436)
                      .......--++...|++.           ........+|++||.++.+-+.+.+  |+ ..+.|+.|+...+
T Consensus       105 ~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~  173 (325)
T COG0470         105 PLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEA  173 (325)
T ss_pred             CCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHH
Confidence            000011112344444432           1223457899999999999998888  88 6778877655543

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=98.22  E-value=4e-06  Score=87.66  Aligned_cols=73  Identities=10%  Similarity=0.116  Sum_probs=45.9

Q ss_pred             EEEEecCC-cC---CCCccccCCCcee--EEEEcCCCCHHHHHHHHHHHhcccCCC-CCcHHHHHhhhhcCCCCHHHHHH
Q 013823          311 IIVFTTNH-KE---RIDPALLRPGRMD--VHINMSYCTVHGFKVLASNYLGIKGKS-HSLFGEIEGLIQSTDVTPAEVAE  383 (436)
Q Consensus       311 ivI~TTN~-~~---~lD~AllRpGR~d--~~I~~~~p~~~~r~~i~~~~l~~~~~~-~~~~~~i~~l~~~~~~tpaei~~  383 (436)
                      -+|+|+|. |.   .+++.+..  ||.  ..+.+..|+.+++..++++.+...+.. ....+.+.-++....-++..+..
T Consensus       241 ~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~g  318 (450)
T PRK14087        241 QLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKG  318 (450)
T ss_pred             cEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHH
Confidence            45667664 33   35778888  884  788899999999999999988764311 22233334444444445555444


Q ss_pred             HH
Q 013823          384 EL  385 (436)
Q Consensus       384 ~l  385 (436)
                      .|
T Consensus       319 aL  320 (450)
T PRK14087        319 SV  320 (450)
T ss_pred             HH
Confidence            44

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=98.22  E-value=2.3e-06  Score=77.11  Aligned_cols=90  Identities=21%  Similarity=0.310  Sum_probs=53.6

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc-----------------------cCCC----C--------------
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR-----------------------QNDG----A--------------  282 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r-----------------------~~~~----~--------------  282 (436)
                      ..+..+||+||+|+||+++|.++|..+--.-...                       ....    .              
T Consensus        17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~   96 (162)
T PF13177_consen   17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSL   96 (162)
T ss_dssp             C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTS
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHH
Confidence            4467899999999999999999999876211110                       0000    0              


Q ss_pred             -------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCC
Q 013823          283 -------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSY  340 (436)
Q Consensus       283 -------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~  340 (436)
                                   ..+.......+.||..|+.-    .+..++|++|+.++.|-|.+++  |+ ..|.|+.
T Consensus        97 ~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep----p~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~  160 (162)
T PF13177_consen   97 SPSEGKYKVIIIDEADKLTEEAQNALLKTLEEP----PENTYFILITNNPSKILPTIRS--RC-QVIRFRP  160 (162)
T ss_dssp             S-TTSSSEEEEEETGGGS-HHHHHHHHHHHHST----TTTEEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred             HHhcCCceEEEeehHhhhhHHHHHHHHHHhcCC----CCCEEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence                         00011122233455555544    3458999999999999999998  87 5666654

...

>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]

Probab=98.11  E-value=6.7e-05  Score=72.60  Aligned_cols=52  Identities=27%  Similarity=0.395  Sum_probs=38.6

Q ss_pred             cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +-++|+...++..- .+...++.+.       -..|++||.||||||||.||-+|+.+||
T Consensus        38 ~g~vGQ~~AReAag-iivdlik~Kk-------maGravLlaGppgtGKTAlAlaisqELG   89 (456)
T KOG1942|consen   38 AGFVGQENAREAAG-IIVDLIKSKK-------MAGRAVLLAGPPGTGKTALALAISQELG   89 (456)
T ss_pred             cccccchhhhhhhh-HHHHHHHhhh-------ccCcEEEEecCCCCchhHHHHHHHHHhC
Confidence            45788888877542 2333333332       2358999999999999999999999999

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=98.10  E-value=3.5e-06  Score=89.21  Aligned_cols=67  Identities=30%  Similarity=0.457  Sum_probs=52.8

Q ss_pred             CCccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          198 GMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       198 ~~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      ..|-  ..-.|.+.++|+..++..++|...+...+.        +....+-+||+||||||||++++++|+++|.++
T Consensus         7 ~~W~--~ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v   73 (519)
T PF03215_consen    7 EPWV--EKYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEV   73 (519)
T ss_pred             Cccc--hhcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCee
Confidence            4674  467899999999999888888887764332        333445678899999999999999999999443

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=98.07  E-value=4.2e-06  Score=85.53  Aligned_cols=65  Identities=17%  Similarity=0.278  Sum_probs=45.0

Q ss_pred             ccccChhHHHHHHHHHHHHHhhHHHHHHhC-CCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc
Q 013823          213 TLAMDPELKQMILDDLDRFLRRKEFYRRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR  277 (436)
Q Consensus       213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g-~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r  277 (436)
                      -|+|+++.|+.+...+.........-...+ -..|+++||+||||||||++|+++|..++.++...
T Consensus        13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~v   78 (441)
T TIGR00390        13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKV   78 (441)
T ss_pred             hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEe
Confidence            378999999998776654322211111111 12358999999999999999999999999555433

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=98.04  E-value=3.7e-05  Score=76.85  Aligned_cols=101  Identities=12%  Similarity=0.123  Sum_probs=67.1

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhcchhhcc--cCCCC-------------------------C--------------
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR--QNDGA-------------------------S--------------  283 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r--~~~~~-------------------------~--------------  283 (436)
                      .+.++||+||+|+||+++|.++|..+...-...  ....|                         .              
T Consensus        23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~  102 (325)
T PRK06871         23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQH  102 (325)
T ss_pred             cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhc
Confidence            456899999999999999999999886321100  00000                         0              


Q ss_pred             -------------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHH
Q 013823          284 -------------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLA  350 (436)
Q Consensus       284 -------------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~  350 (436)
                                   .+.......+.||..|+.    +...+++|++|++++.|.|.+++  |+ ..+.|+.|+.++....+
T Consensus       103 ~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE----Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~~~~~~~~~~~~~~L  175 (325)
T PRK06871        103 AQQGGNKVVYIQGAERLTEAAANALLKTLEE----PRPNTYFLLQADLSAALLPTIYS--RC-QTWLIHPPEEQQALDWL  175 (325)
T ss_pred             cccCCceEEEEechhhhCHHHHHHHHHHhcC----CCCCeEEEEEECChHhCchHHHh--hc-eEEeCCCCCHHHHHHHH
Confidence                         000011122334444444    23568999999999999999998  88 67899999988876555


Q ss_pred             HH
Q 013823          351 SN  352 (436)
Q Consensus       351 ~~  352 (436)
                      ..
T Consensus       176 ~~  177 (325)
T PRK06871        176 QA  177 (325)
T ss_pred             HH
Confidence            54

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=98.02  E-value=6.8e-06  Score=77.03  Aligned_cols=56  Identities=23%  Similarity=0.383  Sum_probs=44.0

Q ss_pred             cccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          203 INLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       203 ~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +....|..+.||+|.++..+.+.-...           -|--  -.+++.||||||||+-+.++|.+|-
T Consensus        18 VeKYrP~~l~dIVGNe~tv~rl~via~-----------~gnm--P~liisGpPG~GKTTsi~~LAr~LL   73 (333)
T KOG0991|consen   18 VEKYRPSVLQDIVGNEDTVERLSVIAK-----------EGNM--PNLIISGPPGTGKTTSILCLARELL   73 (333)
T ss_pred             HHhhCchHHHHhhCCHHHHHHHHHHHH-----------cCCC--CceEeeCCCCCchhhHHHHHHHHHh
Confidence            567889999999999999887744222           1211  2589999999999999999998764

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=98.02  E-value=5e-05  Score=75.76  Aligned_cols=101  Identities=13%  Similarity=0.181  Sum_probs=66.7

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhcchhhc-----------------------ccCC--C--CC-------------
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD-----------------------RQND--G--AS-------------  283 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~-----------------------r~~~--~--~~-------------  283 (436)
                      ..+.++||+||.|+||+++|.++|..+...-..                       ....  +  ..             
T Consensus        23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~  102 (319)
T PRK06090         23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQE  102 (319)
T ss_pred             CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhh
Confidence            345689999999999999999999987621100                       0000  0  00             


Q ss_pred             --------------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHH
Q 013823          284 --------------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVL  349 (436)
Q Consensus       284 --------------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i  349 (436)
                                    .+......-+.||+.++.    ++.+.++|++|+.++.|-|.+++  |+ ..+.|+.|+.++....
T Consensus       103 ~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTI~S--RC-q~~~~~~~~~~~~~~~  175 (319)
T PRK06090        103 SSQLNGYRLFVIEPADAMNESASNALLKTLEE----PAPNCLFLLVTHNQKRLLPTIVS--RC-QQWVVTPPSTAQAMQW  175 (319)
T ss_pred             CcccCCceEEEecchhhhCHHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHh--cc-eeEeCCCCCHHHHHHH
Confidence                          000011122334444444    23558999999999999999999  98 5889999999886655


Q ss_pred             HH
Q 013823          350 AS  351 (436)
Q Consensus       350 ~~  351 (436)
                      +.
T Consensus       176 L~  177 (319)
T PRK06090        176 LK  177 (319)
T ss_pred             HH
Confidence            54

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]

Probab=98.02  E-value=1.4e-05  Score=81.05  Aligned_cols=50  Identities=28%  Similarity=0.301  Sum_probs=41.0

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -+|.-++|++.+|..|.-...             .+.-.|+|+-|+.|||||++++|||..|.
T Consensus        14 ~pf~aivGqd~lk~aL~l~av-------------~P~iggvLI~G~kGtaKSt~~Rala~LLp   63 (423)
T COG1239          14 LPFTAIVGQDPLKLALGLNAV-------------DPQIGGALIAGEKGTAKSTLARALADLLP   63 (423)
T ss_pred             cchhhhcCchHHHHHHhhhhc-------------ccccceeEEecCCCccHHHHHHHHHHhCC
Confidence            468889999999998744322             23447899999999999999999999887

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=98.00  E-value=1.2e-05  Score=86.71  Aligned_cols=108  Identities=16%  Similarity=0.105  Sum_probs=67.5

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcch--hhcccCC--CC-----------------------------------CCCC
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVE--MKDRQND--GA-----------------------------------SVGS  286 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~--~~~r~~~--~~-----------------------------------~~~~  286 (436)
                      -.++||.|+||||||++|++++..+...  +......  ..                                   +.+.
T Consensus        16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r   95 (589)
T TIGR02031        16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL   95 (589)
T ss_pred             cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence            3579999999999999999999977532  1111100  00                                   0000


Q ss_pred             CcceeecceeecccCc---------ccCCCCeEEEEEecCCcC---CCCccccCCCceeEEEEcCCC-CHHHHHHHHHHH
Q 013823          287 NTKLTLSGILNFIDGL---------WSSCGDERIIVFTTNHKE---RIDPALLRPGRMDVHINMSYC-TVHGFKVLASNY  353 (436)
Q Consensus       287 ~~~~~~s~LL~~ldg~---------~~~~~~~~ivI~TTN~~~---~lD~AllRpGR~d~~I~~~~p-~~~~r~~i~~~~  353 (436)
                      ....+.+.|++.|+.-         .........||+|+|..+   .|+++|+.  ||+.+|.+.++ +.++|..|++++
T Consensus        96 l~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~~er~eil~~~  173 (589)
T TIGR02031        96 LDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQDLRVEIVRRE  173 (589)
T ss_pred             CCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCHHHHHHHHHHH
Confidence            1112223344444311         111113467888999765   79999999  99999988765 556688888887


Q ss_pred             hc
Q 013823          354 LG  355 (436)
Q Consensus       354 l~  355 (436)
                      +.
T Consensus       174 ~~  175 (589)
T TIGR02031       174 RC  175 (589)
T ss_pred             HH
Confidence            63

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=6e-05  Score=76.69  Aligned_cols=131  Identities=19%  Similarity=0.202  Sum_probs=82.8

Q ss_pred             cccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc----------------
Q 013823          214 LAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR----------------  277 (436)
Q Consensus       214 i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r----------------  277 (436)
                      +..-++..+++...+...+.+         ..|..+++|||||||||..++-++.++.......                
T Consensus        19 l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i   89 (366)
T COG1474          19 LPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV   89 (366)
T ss_pred             ccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence            777788888888776655432         2344699999999999999999999887221110                


Q ss_pred             ---------cCCCCCCC------------CCcceeecceeecccCcccCC--------------CCeEEEEEecCCc---
Q 013823          278 ---------QNDGASVG------------SNTKLTLSGILNFIDGLWSSC--------------GDERIIVFTTNHK---  319 (436)
Q Consensus       278 ---------~~~~~~~~------------~~~~~~~s~LL~~ldg~~~~~--------------~~~~ivI~TTN~~---  319 (436)
                               .....+..            .....++--.|+++|.+....              .-.+++|+.+|..   
T Consensus        90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~  169 (366)
T COG1474          90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFL  169 (366)
T ss_pred             HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHH
Confidence                     00000000            011122223445555443221              2346788999875   


Q ss_pred             CCCCccccCCCce-eEEEEcCCCCHHHHHHHHHHHhc
Q 013823          320 ERIDPALLRPGRM-DVHINMSYCTVHGFKVLASNYLG  355 (436)
Q Consensus       320 ~~lD~AllRpGR~-d~~I~~~~p~~~~r~~i~~~~l~  355 (436)
                      +.+||-+.+  ++ ...|.||+.+.++...|+..-..
T Consensus       170 ~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~  204 (366)
T COG1474         170 DYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVE  204 (366)
T ss_pred             HHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHH
Confidence            468887776  44 35589999999999999887654

>PRK08939 primosomal protein DnaI; Reviewed

Probab=97.96  E-value=9.5e-06  Score=80.64  Aligned_cols=58  Identities=34%  Similarity=0.480  Sum_probs=40.1

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+|+++...+.-+..+...+..|+..   |.. | +..+|++||||||||||.|+.|||+++.
T Consensus       124 atf~~~~~~~~~~~~~~~~~~~fi~~---~~~-~-~~~~gl~L~G~~G~GKThLa~Aia~~l~  181 (306)
T PRK08939        124 ASLADIDLDDRDRLDALMAALDFLEA---YPP-G-EKVKGLYLYGDFGVGKSYLLAAIANELA  181 (306)
T ss_pred             CcHHHhcCCChHHHHHHHHHHHHHHH---hhc-c-CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            56777766554444454444445432   211 1 3458999999999999999999999984

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=97.93  E-value=1.1e-05  Score=82.59  Aligned_cols=63  Identities=17%  Similarity=0.297  Sum_probs=43.7

Q ss_pred             cccChhHHHHHHHHHHHHHhhHHHHHHhCC-CCcceeeEeCCCCCChhHHHHHHHHHhcchhhc
Q 013823          214 LAMDPELKQMILDDLDRFLRRKEFYRRVGK-AWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD  276 (436)
Q Consensus       214 i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~-~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~  276 (436)
                      |+|+++.|+.+...+............... ..++++||+||||||||++|++||..++.++..
T Consensus        17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~   80 (443)
T PRK05201         17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK   80 (443)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChhee
Confidence            899999999997776532221110000001 125789999999999999999999999955543

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=97.93  E-value=4.7e-05  Score=75.97  Aligned_cols=41  Identities=10%  Similarity=0.135  Sum_probs=34.2

Q ss_pred             CeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHH
Q 013823          308 DERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLAS  351 (436)
Q Consensus       308 ~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~  351 (436)
                      ...++|++|+.++.|-|.+++  |+ ..|.|+.|+.++....+.
T Consensus       142 ~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~~~~~~~~~~~~L~  182 (319)
T PRK08769        142 PGRYLWLISAQPARLPATIRS--RC-QRLEFKLPPAHEALAWLL  182 (319)
T ss_pred             CCCeEEEEECChhhCchHHHh--hh-eEeeCCCcCHHHHHHHHH
Confidence            457899999999999999999  98 678999999887655554

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=97.93  E-value=2.4e-05  Score=78.70  Aligned_cols=102  Identities=14%  Similarity=0.143  Sum_probs=67.4

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhcchhhc------------------------ccCC---C-C-------------
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD------------------------RQND---G-A-------------  282 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~------------------------r~~~---~-~-------------  282 (436)
                      ..+.++||+||+|+||+++|.++|..+-..-..                        ....   . .             
T Consensus        22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~  101 (334)
T PRK07993         22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY  101 (334)
T ss_pred             CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence            345689999999999999999999988521100                        0000   0 0             


Q ss_pred             ---C-----------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHH
Q 013823          283 ---S-----------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKV  348 (436)
Q Consensus       283 ---~-----------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~  348 (436)
                         .           .+......-+.||..|+.    +++..++|++|++++.|.|.+++  |+- .+.|+.|+.++...
T Consensus       102 ~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~~~~~~~  174 (334)
T PRK07993        102 EHARLGGAKVVWLPDAALLTDAAANALLKTLEE----PPENTWFFLACREPARLLATLRS--RCR-LHYLAPPPEQYALT  174 (334)
T ss_pred             hccccCCceEEEEcchHhhCHHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHh--ccc-cccCCCCCHHHHHH
Confidence               0           000111122335555544    24568999999999999999999  985 68999999887666


Q ss_pred             HHHH
Q 013823          349 LASN  352 (436)
Q Consensus       349 i~~~  352 (436)
                      .+..
T Consensus       175 ~L~~  178 (334)
T PRK07993        175 WLSR  178 (334)
T ss_pred             HHHH
Confidence            5543

>PRK07952 DNA replication protein DnaC; Validated

Probab=97.91  E-value=2.1e-05  Score=75.54  Aligned_cols=60  Identities=25%  Similarity=0.451  Sum_probs=41.1

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..++.+|++.....+..+.+...+..+...   +.    ....+++|+||||||||+|+.|||+++.
T Consensus        65 ~~~~~tFdnf~~~~~~q~~al~~a~~~~~~---~~----~~~~~~~l~G~~GtGKThLa~aia~~l~  124 (244)
T PRK07952         65 LHQNCSFENYRVECEGQMNALSKARQYVEE---FD----GNIASFIFSGKPGTGKNHLAAAICNELL  124 (244)
T ss_pred             cccCCccccccCCCchHHHHHHHHHHHHHh---hc----cCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            445678999876554444444555544422   11    1135899999999999999999999884

>PHA02624 large T antigen; Provisional

Probab=97.90  E-value=1.5e-05  Score=84.50  Aligned_cols=95  Identities=17%  Similarity=0.213  Sum_probs=59.8

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh-cchhhcccCCCC------------------------CCC-----CCccee
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL-SVEMKDRQNDGA------------------------SVG-----SNTKLT  291 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~r~~~~~------------------------~~~-----~~~~~~  291 (436)
                      |+|.++.+|||||||||||+++.+|++.+ |..+. ...+..                        ...     +..-..
T Consensus       427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vls-VNsPt~ks~FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~G~~~dN  505 (647)
T PHA02624        427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLN-VNCPPDKLNFELGCAIDQFMVVFEDVKGQPADNKDLPSGQGMNN  505 (647)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEE-eeCCcchhHHHhhhhhhceEEEeeeccccccccccCCcccccch
Confidence            67888899999999999999999999999 43222 111100                        000     000011


Q ss_pred             ecceeecccCcccCCCC-----e-----EEEEEecCCcCCCCccccCCCceeEEEEcCC
Q 013823          292 LSGILNFIDGLWSSCGD-----E-----RIIVFTTNHKERIDPALLRPGRMDVHINMSY  340 (436)
Q Consensus       292 ~s~LL~~ldg~~~~~~~-----~-----~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~  340 (436)
                      +..|-+.+||-..-+=+     .     --.|.|||. ..||..+.-  ||-.+|.|..
T Consensus       506 l~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~  561 (647)
T PHA02624        506 LDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP  561 (647)
T ss_pred             hhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence            24567788886111100     0     136788986 567888877  9999888864

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.86  E-value=1.6e-05  Score=84.07  Aligned_cols=60  Identities=22%  Similarity=0.287  Sum_probs=45.8

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .....-|+++.|+++.++.|.+++.....      .++ ...+-++|.||||+|||+||++||+.+.
T Consensus        69 i~ry~fF~d~yGlee~ieriv~~l~~Aa~------gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le  128 (644)
T PRK15455         69 IKRYPAFEEFYGMEEAIEQIVSYFRHAAQ------GLE-EKKQILYLLGPVGGGKSSLAERLKSLME  128 (644)
T ss_pred             cccccchhcccCcHHHHHHHHHHHHHHHH------hcC-CCCceEEEecCCCCCchHHHHHHHHHHH
Confidence            34456799999999999999887753332      111 2335688999999999999999998765

>PRK08118 topology modulation protein; Reviewed

Probab=97.86  E-value=1.7e-05  Score=71.88  Aligned_cols=99  Identities=17%  Similarity=0.131  Sum_probs=61.1

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCCC--CCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCcc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASVG--SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPA  325 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~~--~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~A  325 (436)
                      .+++.||||+||||+|+.|++.++.+....+..--..+  ..+..   .+...++.+...  +.  .|+-.|....++..
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~---~~~~~~~~~~~~--~~--wVidG~~~~~~~~~   75 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKE---EQITVQNELVKE--DE--WIIDGNYGGTMDIR   75 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHH---HHHHHHHHHhcC--CC--EEEeCCcchHHHHH
Confidence            48999999999999999999999966443322110000  01111   111112222111  12  34566666666544


Q ss_pred             ccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          326 LLRPGRMDVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       326 llRpGR~d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                      + .  +.|..|.+..|.......++++.+..
T Consensus        76 l-~--~~d~vi~Ld~p~~~~~~R~~~R~~~~  103 (167)
T PRK08118         76 L-N--AADTIIFLDIPRTICLYRAFKRRVQY  103 (167)
T ss_pred             H-H--hCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence            3 2  68999999999998888888887753

>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.85  E-value=0.0011  Score=60.98  Aligned_cols=134  Identities=12%  Similarity=0.213  Sum_probs=91.2

Q ss_pred             CeEEEEecCCCCCcchHHHHHHHHHhhcCC-ccccceeeeccC----------------------CCCceeEeccCCCee
Q 013823           59 NLTLVFDEWSGMSRNQVFDAAELYLRTKIN-PDTERLKVSKTS----------------------RQKNFTVSIEKGEEV  115 (436)
Q Consensus        59 ~~ti~i~e~~~~~~n~~y~a~~~YL~~~~~-~~~~rl~~~~~~----------------------~~~~~~l~~~~~e~v  115 (436)
                      ..||.|+.     .+++|+.+-.+|+.... ..++++.+....                      +...+.+.+..| ..
T Consensus        26 ~~sv~I~~-----~D~~Y~~lm~Wls~q~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~G-~h   99 (187)
T PF08740_consen   26 TSSVEIPS-----DDEAYDWLMRWLSSQPFSKRSRHLSATTRSNSSWDDDESDDEDSWDTNTSDDKKKPIRFTPSPG-TH   99 (187)
T ss_pred             EEEEEECC-----CCHHHHHHHHHHhhCCcccccceeEEEeecccccccccccccchhccccccCCcCCeEEEeCCC-CE
Confidence            46778875     44899999999987754 445676665522                      355788999999 77


Q ss_pred             EEeecCeeEEEEEEeecCCCCCC-----CcceEEEEEecccchhhHHhhhhHHHHHHHHHHHhcceEEEEeecCCCCCCC
Q 013823          116 TDSFQNVQLQWKFVCKEPQNNHS-----GEKRYFELSFHKKHKQTVICYYLPHVVERAKEIKQEEKVVKLYNRECPYDDD  190 (436)
Q Consensus       116 ~D~F~Gv~~~W~~~~~~~~~~~~-----~~~~~~~l~f~~~~~~~vl~~yl~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (436)
                      ...|+|   +|..+.+..++...     .+.+.++|++..++++ +|..+|.+..+.+  .+.++....||.....    
T Consensus       100 ~F~y~G---~~~~~~R~~~~~~~~~~~~~~~e~l~l~~lg~s~~-~l~~ll~ear~~~--~~~~~~~t~Iy~~~~~----  169 (187)
T PF08740_consen  100 WFWYKG---RWFWFSRQRESNSYNSWTGAPDETLTLSCLGRSPK-PLKDLLEEAREYY--LKKQKGKTTIYRADGS----  169 (187)
T ss_pred             EEEECC---EEEEEEEEeccccccccCCCCceEEEEEEecCCHH-HHHHHHHHHHHHH--HHhcCCcEEEEeCCCC----
Confidence            788999   67666665432211     2478999999988776 5555444444333  2344455779988531    


Q ss_pred             CCCCCCCCCccccccCCCCCCccc
Q 013823          191 DDGGGGGGMWGSINLEHPSTFDTL  214 (436)
Q Consensus       191 ~~~~~~~~~w~~~~~~~~~~~~~i  214 (436)
                            +..|..+...+++++++|
T Consensus       170 ------~~~W~~~~~r~~RplsTV  187 (187)
T PF08740_consen  170 ------EYRWRRVASRPKRPLSTV  187 (187)
T ss_pred             ------CCCCcCCCCcCCCCCCCC
Confidence                  226999888888899876

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=97.84  E-value=1.3e-05  Score=80.28  Aligned_cols=40  Identities=5%  Similarity=0.138  Sum_probs=32.4

Q ss_pred             eEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHH
Q 013823          309 ERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLAS  351 (436)
Q Consensus       309 ~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~  351 (436)
                      ...+|++|++++.+.+.+.+  |+ .++.|+.|+.++....+.
T Consensus       143 ~~~~Ilvth~~~~ll~ti~S--Rc-~~~~~~~~~~~~~~~~L~  182 (325)
T PRK08699        143 QVVFLLVSHAADKVLPTIKS--RC-RKMVLPAPSHEEALAYLR  182 (325)
T ss_pred             CCEEEEEeCChHhChHHHHH--Hh-hhhcCCCCCHHHHHHHHH
Confidence            36788899999999999988  88 688999999887655443

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=97.84  E-value=4e-05  Score=74.92  Aligned_cols=44  Identities=23%  Similarity=0.334  Sum_probs=29.6

Q ss_pred             eEEEEEecCCcC---CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823          309 ERIIVFTTNHKE---RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG  355 (436)
Q Consensus       309 ~~ivI~TTN~~~---~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~  355 (436)
                      ++.+|+++|...   .+++.|+|  .| ..+.++.|+.++...|+..++.
T Consensus       148 ~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~p~~~sl~~If~~il~  194 (272)
T PF12775_consen  148 DIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPYPSDESLNTIFSSILQ  194 (272)
T ss_dssp             SEEEEEEESSTTT--SHHHHHHT--TE-EEEE----TCCHHHHHHHHHHH
T ss_pred             eeEEEEecCCCCCCCCCChHHhh--he-EEEEecCCChHHHHHHHHHHHh
Confidence            356778877532   47788888  77 5889999999998877777665

>PRK07261 topology modulation protein; Provisional

Probab=97.83  E-value=1.2e-05  Score=73.06  Aligned_cols=100  Identities=12%  Similarity=0.105  Sum_probs=61.5

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccC
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLR  328 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllR  328 (436)
                      +++.||||+||||+|+.|+..++.+....+...-..+ ........++..++.+...  + . .|+-.|+...+-+..+.
T Consensus         3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-~~~~~~~~~~~~~~~~~~~--~-~-wIidg~~~~~~~~~~l~   77 (171)
T PRK07261          3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-WQERDDDDMIADISNFLLK--H-D-WIIDGNYSWCLYEERMQ   77 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-cccCCHHHHHHHHHHHHhC--C-C-EEEcCcchhhhHHHHHH
Confidence            7899999999999999999998865544322111101 1111122333333333221  2 3 34444444433234445


Q ss_pred             CCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823          329 PGRMDVHINMSYCTVHGFKVLASNYLG  355 (436)
Q Consensus       329 pGR~d~~I~~~~p~~~~r~~i~~~~l~  355 (436)
                        ++|..|.+..|.......++++.+.
T Consensus        78 --~ad~vI~Ld~p~~~~~~R~lkR~~~  102 (171)
T PRK07261         78 --EADQIIFLNFSRFNCLYRAFKRYLK  102 (171)
T ss_pred             --HCCEEEEEcCCHHHHHHHHHHHHHH
Confidence              7899999999999888888888764

>PRK12377 putative replication protein; Provisional

Probab=97.81  E-value=3.9e-05  Score=73.93  Aligned_cols=26  Identities=42%  Similarity=0.673  Sum_probs=23.9

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..+++|+||||||||.||.|||+++.
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~  126 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLL  126 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            36899999999999999999999885

>PRK09862 putative ATP-dependent protease; Provisional

Probab=97.79  E-value=2.3e-05  Score=82.56  Aligned_cols=47  Identities=28%  Similarity=0.361  Sum_probs=34.0

Q ss_pred             CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .|.++.|....++.+.-               .......++|+||||||||++++.|++.+.
T Consensus       189 d~~~v~Gq~~~~~al~l---------------aa~~G~~llliG~~GsGKTtLak~L~gllp  235 (506)
T PRK09862        189 DLSDVIGQEQGKRGLEI---------------TAAGGHNLLLIGPPGTGKTMLASRINGLLP  235 (506)
T ss_pred             CeEEEECcHHHHhhhhe---------------eccCCcEEEEECCCCCcHHHHHHHHhccCC
Confidence            57777777665554321               122345799999999999999999998665

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=97.75  E-value=4.7e-05  Score=65.27  Aligned_cols=53  Identities=17%  Similarity=0.116  Sum_probs=41.8

Q ss_pred             ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .|.|++-+++.|...+..++..+      .-..|--+.|+||||||||.+++.||+.+-
T Consensus        26 ~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~ly   78 (127)
T PF06309_consen   26 NLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHLY   78 (127)
T ss_pred             HccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence            58899999999999999887654      112233455899999999999999999763

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=97.75  E-value=3.9e-05  Score=76.94  Aligned_cols=54  Identities=33%  Similarity=0.454  Sum_probs=38.8

Q ss_pred             CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..+-++|+.+.++..--.+. .++       -|.-..|++||.||||||||.||-+||.+||
T Consensus        22 ~~~GlVGQ~~AReAagiiv~-mIk-------~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG   75 (398)
T PF06068_consen   22 IADGLVGQEKAREAAGIIVD-MIK-------EGKIAGRAILIAGPPGTGKTALAMAIAKELG   75 (398)
T ss_dssp             EETTEES-HHHHHHHHHHHH-HHH-------TT--TT-EEEEEE-TTSSHHHHHHHHHHHCT
T ss_pred             ccccccChHHHHHHHHHHHH-HHh-------cccccCcEEEEeCCCCCCchHHHHHHHHHhC
Confidence            35679999999987644333 232       2333568999999999999999999999999

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.75  E-value=2e-05  Score=66.71  Aligned_cols=28  Identities=39%  Similarity=0.638  Sum_probs=25.0

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      +..++|+||||||||++++++|..+...
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            3579999999999999999999998854

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=5.3e-05  Score=78.41  Aligned_cols=103  Identities=21%  Similarity=0.247  Sum_probs=64.0

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC----------------------------------------C-C
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA----------------------------------------S-V  284 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~----------------------------------------~-~  284 (436)
                      -.++||+||||+|||.||..||...+.++...-....                                        . .
T Consensus       538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIG  617 (744)
T KOG0741|consen  538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIG  617 (744)
T ss_pred             ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccC
Confidence            3579999999999999999999988844432211110                                        0 0


Q ss_pred             CCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc-cccCCCceeEEEEcCCCCH-HHHHHHHH
Q 013823          285 GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP-ALLRPGRMDVHINMSYCTV-HGFKVLAS  351 (436)
Q Consensus       285 ~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~-AllRpGR~d~~I~~~~p~~-~~r~~i~~  351 (436)
                      ...++.++..|+-.+..... .|...+|++||.+.+-|.. .++.  .|+..|++|..+. ++...++.
T Consensus       618 PRfSN~vlQaL~VllK~~pp-kg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~  683 (744)
T KOG0741|consen  618 PRFSNLVLQALLVLLKKQPP-KGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE  683 (744)
T ss_pred             chhhHHHHHHHHHHhccCCC-CCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence            12233344444444444432 2445677778877665532 4555  8999999998877 44444444

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=2.7e-05  Score=80.07  Aligned_cols=49  Identities=27%  Similarity=0.413  Sum_probs=41.0

Q ss_pred             CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ...|.||.|++..|..+.-...               -..++||+||||||||++|+.+..-|-
T Consensus       175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lLP  223 (490)
T COG0606         175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLLP  223 (490)
T ss_pred             CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccCC
Confidence            4579999999999998754332               357899999999999999999988776

>PRK08181 transposase; Validated

Probab=97.66  E-value=6.2e-05  Score=73.43  Aligned_cols=26  Identities=50%  Similarity=0.755  Sum_probs=23.3

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..+++|+||||||||.|+.|+|+++-
T Consensus       106 ~~nlll~Gp~GtGKTHLa~Aia~~a~  131 (269)
T PRK08181        106 GANLLLFGPPGGGKSHLAAAIGLALI  131 (269)
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHH
Confidence            46899999999999999999998663

>TIGR00368 Mg chelatase-related protein

Probab=97.66  E-value=5.6e-05  Score=79.89  Aligned_cols=48  Identities=25%  Similarity=0.414  Sum_probs=36.8

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..|++|.|+...++.+.-.+               .....++|.||||||||+++++++..+.
T Consensus       189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp  236 (499)
T TIGR00368       189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILP  236 (499)
T ss_pred             CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccC
Confidence            47899999988876553321               2235699999999999999999997543

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>PRK08116 hypothetical protein; Validated

Probab=97.64  E-value=9e-05  Score=72.32  Aligned_cols=26  Identities=50%  Similarity=0.712  Sum_probs=23.8

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+|++|+||||||||.||.|||+++-
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~  139 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELI  139 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999999874

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=97.61  E-value=0.0001  Score=71.35  Aligned_cols=54  Identities=31%  Similarity=0.583  Sum_probs=36.7

Q ss_pred             CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+.++-+.+...+.....+..+.   ++|.     .+.+++||||||||||.||.|||+++-
T Consensus        77 ~~~d~~~~~~~~~~~l~~~~~~~---~~~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~  130 (254)
T COG1484          77 EEFDFEFQPGIDKKALEDLASLV---EFFE-----RGENLVLLGPPGVGKTHLAIAIGNELL  130 (254)
T ss_pred             ccccccCCcchhHHHHHHHHHHH---HHhc-----cCCcEEEECCCCCcHHHHHHHHHHHHH
Confidence            34455555555554444444332   2232     457899999999999999999999886

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.59  E-value=4e-05  Score=64.85  Aligned_cols=104  Identities=15%  Similarity=0.201  Sum_probs=53.1

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcchhhcccC-----CCCCC-CCCc---ceeecceeecccCcccCCCCeEEEEEecCCc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVEMKDRQN-----DGASV-GSNT---KLTLSGILNFIDGLWSSCGDERIIVFTTNHK  319 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~-----~~~~~-~~~~---~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~  319 (436)
                      |++.||||+||||+|+.+|+.+|........     ..... ....   ......+.+.++.+...+ ..-.+|+..++.
T Consensus         2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ii~g~~~   80 (121)
T PF13207_consen    2 IIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQLQNKP-DNDNWIIDGSYE   80 (121)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHHHETT-T--EEEEECCSC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhhhccC-CCCeEEEeCCCc
Confidence            6899999999999999999999854322111     00000 0100   001111222333332111 123344444332


Q ss_pred             CCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          320 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       320 ~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                      ...+  + +-...+..|.+..|....+.+++++.+..
T Consensus        81 ~~~~--~-~~~~~~~~i~l~~~~~~~~~~~~~R~~~~  114 (121)
T PF13207_consen   81 SEME--I-RLPEFDHVIYLDAPDEECRERRLKRRLRR  114 (121)
T ss_dssp             HCCH--S-CCHHGGCEEEEEEEEHHHHHHHHHHHHHH
T ss_pred             cchh--h-hhhcCCEEEEEECCCHHHHHHHHHHHhHH
Confidence            2222  2 22256677888877776777777766544

...

>PRK04132 replication factor C small subunit; Provisional

Probab=97.58  E-value=0.00018  Score=79.99  Aligned_cols=105  Identities=10%  Similarity=0.008  Sum_probs=65.9

Q ss_pred             eeEeC--CCCCChhHHHHHHHHHh-----cchhhcccCCCC-C-------------CCCC-cceeecceeecccCcc---
Q 013823          249 YLLYG--PPGTGKSSLIAAMANYL-----SVEMKDRQNDGA-S-------------VGSN-TKLTLSGILNFIDGLW---  303 (436)
Q Consensus       249 ~LL~G--PpGtGKT~la~aiA~~l-----~~~~~~r~~~~~-~-------------~~~~-~~~~~s~LL~~ldg~~---  303 (436)
                      .+..|  |++.||||+|+|+|+++     +.++...+.++. +             .... .....--++++.|.+.   
T Consensus       567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~A  646 (846)
T PRK04132        567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDA  646 (846)
T ss_pred             hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHH
Confidence            35568  99999999999999998     222222222221 0             0000 0000112344444442   


Q ss_pred             --------cCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          304 --------SSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       304 --------~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                              ......+.+|++||.++.+.+++++  |+ ..+.|+.|+.++....+......
T Consensus       647 QnALLk~lEep~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~~  704 (846)
T PRK04132        647 QQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAEN  704 (846)
T ss_pred             HHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHHHh
Confidence                    1112457899999999999999998  98 78899999988877666655443

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=97.56  E-value=0.00037  Score=71.36  Aligned_cols=141  Identities=14%  Similarity=0.210  Sum_probs=76.0

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc-------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR-------  277 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r-------  277 (436)
                      ..+.-+|++++..+.-......... .-      ...|. ....++||||.|.|||.|++|++++........       
T Consensus        80 l~~~ytFdnFv~g~~N~~A~aa~~~-va------~~~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s  151 (408)
T COG0593          80 LNPKYTFDNFVVGPSNRLAYAAAKA-VA------ENPGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS  151 (408)
T ss_pred             CCCCCchhheeeCCchHHHHHHHHH-HH------hccCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH
Confidence            4555689997655554433222111 11      11121 235689999999999999999999887111100       


Q ss_pred             ------------cCC--------CCC----CC----CCcceeecceeecccCcccCCCCeEEEEEecCCcCCC---Cccc
Q 013823          278 ------------QND--------GAS----VG----SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERI---DPAL  326 (436)
Q Consensus       278 ------------~~~--------~~~----~~----~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~l---D~Al  326 (436)
                                  ...        ...    ++    .....+...|...+..+...  ...||+.+-..|..+   +|-|
T Consensus       152 e~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~--~kqIvltsdr~P~~l~~~~~rL  229 (408)
T COG0593         152 EDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN--GKQIVLTSDRPPKELNGLEDRL  229 (408)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcCChhHHHHHHHHHHHHHhc--CCEEEEEcCCCchhhccccHHH
Confidence                        000        000    00    00001111122222222221  124444444556654   4777


Q ss_pred             cCCCcee--EEEEcCCCCHHHHHHHHHHHhccc
Q 013823          327 LRPGRMD--VHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       327 lRpGR~d--~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      .+  ||.  ..+++..|+.+.|..++.......
T Consensus       230 ~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~  260 (408)
T COG0593         230 RS--RLEWGLVVEIEPPDDETRLAILRKKAEDR  260 (408)
T ss_pred             HH--HHhceeEEeeCCCCHHHHHHHHHHHHHhc
Confidence            77  875  678899999999999999865544

>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]

Probab=97.54  E-value=8.8e-05  Score=72.62  Aligned_cols=139  Identities=19%  Similarity=0.159  Sum_probs=81.0

Q ss_pred             cccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh------hc
Q 013823          203 INLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM------KD  276 (436)
Q Consensus       203 ~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~------~~  276 (436)
                      +...+|..++++++.+++...+.++.             +.+.-...|+|||||||||+.+.+.|..+-.+-      ..
T Consensus        32 vekyrP~~l~dv~~~~ei~st~~~~~-------------~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~le   98 (360)
T KOG0990|consen   32 VEKYRPPFLGIVIKQEPIWSTENRYS-------------GMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLE   98 (360)
T ss_pred             ccCCCCchhhhHhcCCchhhHHHHhc-------------cCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHH
Confidence            34678889999999998887776642             111112899999999999999999998776310      00


Q ss_pred             ccCCCC-CCC----------C-Cc-------ceeecceeecccCcc-----------cCCCCeEEEEEecCCcCCCCccc
Q 013823          277 RQNDGA-SVG----------S-NT-------KLTLSGILNFIDGLW-----------SSCGDERIIVFTTNHKERIDPAL  326 (436)
Q Consensus       277 r~~~~~-~~~----------~-~~-------~~~~s~LL~~ldg~~-----------~~~~~~~ivI~TTN~~~~lD~Al  326 (436)
                      ...++. +.+          . ..       ....-.+|.+-|...           .....+.=+....|++..+-|++
T Consensus        99 lnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~ki~pa~  178 (360)
T KOG0990|consen   99 LNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQKIHPAQ  178 (360)
T ss_pred             hhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEeccChhhcCchh
Confidence            000000 000          0 00       011112333333221           11122344557789999999999


Q ss_pred             cCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          327 LRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       327 lRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      ..  |+. ...|...+.+.-....++....+
T Consensus       179 qs--Rct-rfrf~pl~~~~~~~r~shi~e~e  206 (360)
T KOG0990|consen  179 QS--RCT-RFRFAPLTMAQQTERQSHIRESE  206 (360)
T ss_pred             hc--ccc-cCCCCCCChhhhhhHHHHHHhcc
Confidence            87  774 34566666555555555555443

>PRK05818 DNA polymerase III subunit delta'; Validated

Probab=97.53  E-value=0.00054  Score=66.12  Aligned_cols=91  Identities=15%  Similarity=0.119  Sum_probs=58.1

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC---------------------------------------C-
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA---------------------------------------S-  283 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~---------------------------------------~-  283 (436)
                      ..+.++||+||+|+||..+|.++|..+-..-.......|                                       . 
T Consensus         5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~   84 (261)
T PRK05818          5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV   84 (261)
T ss_pred             CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence            456789999999999999999999887521100000000                                       0 


Q ss_pred             CC------------CCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCC
Q 013823          284 VG------------SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYC  341 (436)
Q Consensus       284 ~~------------~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p  341 (436)
                      ..            .......+.||..++.    +..+.++|++|+.++.+.|.+++  |+ ..+.|+.+
T Consensus        85 e~~~~KV~II~~ae~m~~~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~S--RC-q~~~~~~~  147 (261)
T PRK05818         85 ESNGKKIYIIYGIEKLNKQSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILS--RC-VQYVVLSK  147 (261)
T ss_pred             hcCCCEEEEeccHhhhCHHHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhh--he-eeeecCCh
Confidence            00            0011122334444444    24568999999999999999999  88 45667666

>PRK00131 aroK shikimate kinase; Reviewed

Probab=97.52  E-value=7.2e-05  Score=67.17  Aligned_cols=32  Identities=25%  Similarity=0.266  Sum_probs=27.8

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK  275 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~  275 (436)
                      +.+..++|+||||||||++++++|..++..+.
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~   33 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFI   33 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence            35678999999999999999999999996544

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.52  E-value=6.8e-05  Score=78.03  Aligned_cols=70  Identities=24%  Similarity=0.331  Sum_probs=51.3

Q ss_pred             CCCccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          197 GGMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       197 ~~~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      +..|-  ..-.|.+.++|+.......+|.+.+..+....      ..-..+-+||+||+||||||.++.||+++|+.+
T Consensus        69 ~elW~--eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~------~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~  138 (634)
T KOG1970|consen   69 FELWV--EKYKPRTLEELAVHKKKISEVKQWLKQVAEFT------PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQL  138 (634)
T ss_pred             cchhH--HhcCcccHHHHhhhHHhHHHHHHHHHHHHHhc------cCCCceEEEEeCCCCCCchhHHHHHHHhhCcee
Confidence            44664  46678999999999888888888776222111      011235688999999999999999999999433

>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.50  E-value=0.00022  Score=68.70  Aligned_cols=138  Identities=21%  Similarity=0.268  Sum_probs=86.8

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc---chh-------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS---VEM-------  274 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---~~~-------  274 (436)
                      .-.|.+|+.+.+.++....+.....     .      + . --.+|+|||+|+||-|.+.|+-+++-   ++-       
T Consensus         6 kyrpksl~~l~~~~e~~~~Lksl~~-----~------~-d-~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t   72 (351)
T KOG2035|consen    6 KYRPKSLDELIYHEELANLLKSLSS-----T------G-D-FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRT   72 (351)
T ss_pred             hcCcchhhhcccHHHHHHHHHHhcc-----c------C-C-CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEE
Confidence            4567888888888888877655322     0      0 0 13699999999999999999988774   000       


Q ss_pred             -----------hccc------CCCCCCCCCc----------------------ceeecceeecccCcccCC---------
Q 013823          275 -----------KDRQ------NDGASVGSNT----------------------KLTLSGILNFIDGLWSSC---------  306 (436)
Q Consensus       275 -----------~~r~------~~~~~~~~~~----------------------~~~~s~LL~~ldg~~~~~---------  306 (436)
                                 ...+      -.+++.+...                      +...--++++.|.+....         
T Consensus        73 ~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTME  152 (351)
T KOG2035|consen   73 FTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTME  152 (351)
T ss_pred             EecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHH
Confidence                       0000      0000111111                      111122445555442110         


Q ss_pred             --CCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccC
Q 013823          307 --GDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKG  358 (436)
Q Consensus       307 --~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~  358 (436)
                        ....=+|+.+|....+-+++.+  |+ ..|.+|.|+.++...++...+...+
T Consensus       153 kYs~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~  203 (351)
T KOG2035|consen  153 KYSSNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEG  203 (351)
T ss_pred             HHhcCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhc
Confidence              0124467888988889999988  87 6789999999999999999887764

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=97.48  E-value=0.00023  Score=71.47  Aligned_cols=51  Identities=22%  Similarity=0.291  Sum_probs=39.7

Q ss_pred             CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -|++++|.....+.+.+.+....           .....+||+|++||||+++|++|-....
T Consensus         4 ~~~~liG~S~~~~~~~~~i~~~a-----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~   54 (326)
T PRK11608          4 YKDNLLGEANSFLEVLEQVSRLA-----------PLDKPVLIIGERGTGKELIASRLHYLSS   54 (326)
T ss_pred             ccCccEECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhCC
Confidence            36788898888888888776443           2235799999999999999999975443

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=97.47  E-value=0.00012  Score=79.31  Aligned_cols=52  Identities=29%  Similarity=0.364  Sum_probs=42.9

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -.+|..|++|+|+++.++.|...+.               .++.++|+||||||||++++++|..+.
T Consensus        24 ~~~~~~~~~vigq~~a~~~L~~~~~---------------~~~~~l~~G~~G~GKttla~~l~~~l~   75 (637)
T PRK13765         24 EVPERLIDQVIGQEHAVEVIKKAAK---------------QRRHVMMIGSPGTGKSMLAKAMAELLP   75 (637)
T ss_pred             ccCcccHHHcCChHHHHHHHHHHHH---------------hCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence            3457899999999999887765443               124799999999999999999999877

>PRK06921 hypothetical protein; Provisional

Probab=97.46  E-value=0.00022  Score=69.58  Aligned_cols=26  Identities=46%  Similarity=0.698  Sum_probs=23.7

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..+++|+||||||||.|+.|||+++.
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~  142 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELM  142 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHh
Confidence            46899999999999999999999873

>PTZ00111 DNA replication licensing factor MCM4; Provisional

Probab=97.43  E-value=0.00035  Score=77.61  Aligned_cols=45  Identities=18%  Similarity=0.264  Sum_probs=33.0

Q ss_pred             eEEEEEecCCcC-------------CCCccccCCCceeEE-EEcCCCCHHHHHHHHHHHhc
Q 013823          309 ERIIVFTTNHKE-------------RIDPALLRPGRMDVH-INMSYCTVHGFKVLASNYLG  355 (436)
Q Consensus       309 ~~ivI~TTN~~~-------------~lD~AllRpGR~d~~-I~~~~p~~~~r~~i~~~~l~  355 (436)
                      ..-||+|+|..+             .|+++++.  |||.. +.++.|+.+.=+.|..+.+.
T Consensus       600 r~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~~  658 (915)
T PTZ00111        600 ETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIAK  658 (915)
T ss_pred             CeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHHH
Confidence            467889999742             47799999  99976 55688888776666665543

>PRK06835 DNA replication protein DnaC; Validated

Probab=97.43  E-value=0.00016  Score=72.52  Aligned_cols=25  Identities=40%  Similarity=0.604  Sum_probs=23.5

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+++||||||||||.|+.|||+++-
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~  208 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELL  208 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHH
Confidence            7899999999999999999999874

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=97.43  E-value=0.00034  Score=76.55  Aligned_cols=52  Identities=25%  Similarity=0.261  Sum_probs=40.2

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+|++++|.....+.+.+.+.....           ....+||+|++||||+++|++|-+...
T Consensus       322 ~~~~~l~g~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~~A~~ih~~s~  373 (638)
T PRK11388        322 HTFDHMPQDSPQMRRLIHFGRQAAK-----------SSFPVLLCGEEGVGKALLAQAIHNESE  373 (638)
T ss_pred             ccccceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCcCHHHHHHHHHHhCC
Confidence            3688888888777777776664332           235699999999999999999987654

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.42  E-value=0.0017  Score=62.85  Aligned_cols=24  Identities=33%  Similarity=0.494  Sum_probs=22.1

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -++|+||||+|||++++.+++.+.
T Consensus        45 ~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        45 FILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcC
Confidence            488999999999999999999876

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=97.41  E-value=9.9e-05  Score=67.59  Aligned_cols=27  Identities=48%  Similarity=0.758  Sum_probs=22.9

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+.+++|+||||||||.||.|||+++-
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~   72 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAI   72 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhc
Confidence            357899999999999999999998764

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.39  E-value=9.9e-05  Score=64.18  Aligned_cols=23  Identities=48%  Similarity=0.866  Sum_probs=21.9

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +++.|||||||||+|+.++..++
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~~   24 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRLG   24 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHST
T ss_pred             EEEECCCCCCHHHHHHHHHHHCC
Confidence            68999999999999999999988

...

>TIGR01817 nifA Nif-specific regulatory protein

Probab=97.36  E-value=0.00038  Score=74.56  Aligned_cols=53  Identities=21%  Similarity=0.224  Sum_probs=42.9

Q ss_pred             CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..+|+.++|.....+.+.+.+.....           ....+||+|++||||+++|++|.....
T Consensus       192 ~~~~~~liG~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~lA~~ih~~s~  244 (534)
T TIGR01817       192 SGKEDGIIGKSPAMRQVVDQARVVAR-----------SNSTVLLRGESGTGKELIAKAIHYLSP  244 (534)
T ss_pred             cCccCceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCccHHHHHHHHHHhCC
Confidence            35789999999988888887764432           235799999999999999999997654

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=97.33  E-value=0.00018  Score=77.99  Aligned_cols=48  Identities=38%  Similarity=0.475  Sum_probs=40.1

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+++++|+++.++.+...+.               .+++++|+||||||||++++++|+.++
T Consensus        15 ~~~~~viG~~~a~~~l~~a~~---------------~~~~~ll~G~pG~GKT~la~~la~~l~   62 (608)
T TIGR00764        15 RLIDQVIGQEEAVEIIKKAAK---------------QKRNVLLIGEPGVGKSMLAKAMAELLP   62 (608)
T ss_pred             hhHhhccCHHHHHHHHHHHHH---------------cCCCEEEECCCCCCHHHHHHHHHHHcC
Confidence            568899999998887765443               125899999999999999999999887

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=97.33  E-value=0.00014  Score=60.70  Aligned_cols=23  Identities=48%  Similarity=0.846  Sum_probs=21.1

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |.||||||+|||++|+.||..+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            57999999999999999998876

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK06526 transposase; Provisional

Probab=97.29  E-value=0.00016  Score=70.08  Aligned_cols=26  Identities=35%  Similarity=0.631  Sum_probs=23.3

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.+++|+||||||||.|+.+|+.++-
T Consensus        98 ~~nlll~Gp~GtGKThLa~al~~~a~  123 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGIRAC  123 (254)
T ss_pred             CceEEEEeCCCCchHHHHHHHHHHHH
Confidence            46899999999999999999998763

>PHA00729 NTP-binding motif containing protein

Probab=97.22  E-value=0.00022  Score=67.49  Aligned_cols=25  Identities=20%  Similarity=0.410  Sum_probs=23.3

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..++++||||||||++|.+||..++
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999986

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=97.21  E-value=0.00023  Score=62.64  Aligned_cols=29  Identities=28%  Similarity=0.417  Sum_probs=25.3

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcchhhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVEMKD  276 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~~~~  276 (436)
                      .++|+||||+|||++++.+|..++..+.+
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~~~~~~   29 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALGLPFVD   29 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence            37899999999999999999999965543

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=97.18  E-value=0.00035  Score=65.33  Aligned_cols=22  Identities=45%  Similarity=0.842  Sum_probs=17.7

Q ss_pred             eeEeCCCCCChhHHHHHHHHHh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      .++.||||||||+++..++..+
T Consensus        20 ~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   20 TLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             EEEE-STTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHh
Confidence            7899999999998777777665

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.17  E-value=0.00031  Score=63.92  Aligned_cols=27  Identities=48%  Similarity=0.776  Sum_probs=23.9

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      ...+||.||+|||||.+|+++|..+..
T Consensus         3 ~~~~ll~GpsGvGKT~la~~la~~l~~   29 (171)
T PF07724_consen    3 KSNFLLAGPSGVGKTELAKALAELLFV   29 (171)
T ss_dssp             SEEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            346899999999999999999999984

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK03839 putative kinase; Provisional

Probab=97.16  E-value=0.00027  Score=64.39  Aligned_cols=28  Identities=32%  Similarity=0.534  Sum_probs=24.8

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcchhhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVEMKD  276 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~~~~  276 (436)
                      ++|.|+||+||||+++.+|+.++..+.+
T Consensus         3 I~l~G~pGsGKsT~~~~La~~~~~~~id   30 (180)
T PRK03839          3 IAITGTPGVGKTTVSKLLAEKLGYEYVD   30 (180)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence            7899999999999999999999965543

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.15  E-value=0.0003  Score=64.13  Aligned_cols=24  Identities=25%  Similarity=0.542  Sum_probs=22.5

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      +++.||||+|||++|+.||..+|+
T Consensus         2 i~i~G~pGsGKst~a~~la~~~~~   25 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENFGF   25 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCC
Confidence            689999999999999999999994

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=97.15  E-value=0.00053  Score=68.94  Aligned_cols=46  Identities=22%  Similarity=0.312  Sum_probs=31.5

Q ss_pred             ccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          215 AMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       215 ~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +|.....+.+.+.+....           .....+||+|++||||+++|++|-....
T Consensus         2 iG~S~~m~~~~~~~~~~a-----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~   47 (329)
T TIGR02974         2 IGESNAFLEVLEQVSRLA-----------PLDRPVLIIGERGTGKELIAARLHYLSK   47 (329)
T ss_pred             CcCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCChHHHHHHHHHHhcC
Confidence            444445555555554332           2346799999999999999999976544

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>PRK13947 shikimate kinase; Provisional

Probab=97.15  E-value=0.00031  Score=63.23  Aligned_cols=30  Identities=33%  Similarity=0.396  Sum_probs=26.5

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcchhhcc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVEMKDR  277 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~~~~r  277 (436)
                      .++|.||||||||++++.+|+.++..+.+.
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~   32 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDT   32 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence            489999999999999999999999766544

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.14  E-value=0.00047  Score=63.58  Aligned_cols=27  Identities=22%  Similarity=0.352  Sum_probs=23.3

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .++-++|.||||+|||+|++.+.....
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~   29 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHP   29 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence            456688999999999999999988763

>PRK14531 adenylate kinase; Provisional

Probab=97.13  E-value=0.00037  Score=63.90  Aligned_cols=27  Identities=30%  Similarity=0.594  Sum_probs=24.5

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      +-+++.||||+||||+++.+|..+|+.
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g~~   29 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHGLR   29 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            458999999999999999999999954

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=97.13  E-value=0.00032  Score=71.33  Aligned_cols=30  Identities=30%  Similarity=0.583  Sum_probs=26.8

Q ss_pred             CCCcceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          243 KAWKRGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       243 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      .+.++|+.||||+|+|||+|.....+.+..
T Consensus        59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~   88 (362)
T PF03969_consen   59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPI   88 (362)
T ss_pred             CCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence            457899999999999999999999888773

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=97.12  E-value=0.00064  Score=69.41  Aligned_cols=105  Identities=21%  Similarity=0.390  Sum_probs=65.7

Q ss_pred             CcceEEEEEecccchhhHHhhhhHHHHHHHHHHH-------hcc------eEEEEeecCCCCCCCCCCCCCCCCcccccc
Q 013823          139 GEKRYFELSFHKKHKQTVICYYLPHVVERAKEIK-------QEE------KVVKLYNRECPYDDDDDGGGGGGMWGSINL  205 (436)
Q Consensus       139 ~~~~~~~l~f~~~~~~~vl~~yl~~v~~~~~~~~-------~~~------~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  205 (436)
                      +++....|.=..-.+. -|+.+-..|++.|+...       ...      +..++-...++.         +..|.-...
T Consensus       169 G~~k~v~l~d~pl~~~-ele~ia~eIi~~a~~~~~sfIEi~r~GatVvQlrn~RIvIarPPf---------Sd~~EITav  238 (604)
T COG1855         169 GEWKLVRLSDKPLTRE-ELEEIAREIIERAKRDPDSFIEIDRPGATVVQLRNYRIVIARPPF---------SDRWEITAV  238 (604)
T ss_pred             CcEEEEEcCCccCCHH-HHHHHHHHHHHHHhhCcCceEEEccCCceEEEeccEEEEEecCCC---------CCceEEEEE
Confidence            4566665543332222 46677778887776542       111      122222222221         234553333


Q ss_pred             CC--CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          206 EH--PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       206 ~~--~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .|  ..++++-.+++.+++.+.+.                  .+|+|+.||||.||||+|+|+|.++.
T Consensus       239 RPvvk~~ledY~L~dkl~eRL~er------------------aeGILIAG~PGaGKsTFaqAlAefy~  288 (604)
T COG1855         239 RPVVKLSLEDYGLSDKLKERLEER------------------AEGILIAGAPGAGKSTFAQALAEFYA  288 (604)
T ss_pred             eeeEEechhhcCCCHHHHHHHHhh------------------hcceEEecCCCCChhHHHHHHHHHHH
Confidence            33  24789999999999988652                  27999999999999999999999887

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.0052  Score=60.95  Aligned_cols=58  Identities=21%  Similarity=0.333  Sum_probs=40.9

Q ss_pred             cccChhHHHHHHHHHHHHHhhHHHHHHhC-CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          214 LAMDPELKQMILDDLDRFLRRKEFYRRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       214 i~g~~~~k~~i~~~l~~~l~~~~~~~~~g-~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |+|+++.|+.+.-.+..-.++...-..+. --.|+.+|+.||.|.|||.+|+.+|+..+
T Consensus        17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~   75 (444)
T COG1220          17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAG   75 (444)
T ss_pred             hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhC
Confidence            78999999988665543222111111111 12478999999999999999999999888

>PRK05917 DNA polymerase III subunit delta'; Validated

Probab=97.10  E-value=0.0018  Score=63.72  Aligned_cols=91  Identities=19%  Similarity=0.260  Sum_probs=57.7

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhcchh----------------hcc--cCCC--CC--------------------
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLSVEM----------------KDR--QNDG--AS--------------------  283 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~----------------~~r--~~~~--~~--------------------  283 (436)
                      ..+.+|||+||+|+||+.+|.++|..+-..-                ...  ....  ..                    
T Consensus        17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~   96 (290)
T PRK05917         17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY   96 (290)
T ss_pred             CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence            3456899999999999999999999875210                000  0000  00                    


Q ss_pred             -------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCC
Q 013823          284 -------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYC  341 (436)
Q Consensus       284 -------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p  341 (436)
                             .+......-+.||+.|+.-    .+++++|++|+.++.|.|.+++  |+ ..+.|+.+
T Consensus        97 kv~ii~~ad~mt~~AaNaLLK~LEEP----p~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~  154 (290)
T PRK05917         97 KIYIIHEADRMTLDAISAFLKVLEDP----PQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME  154 (290)
T ss_pred             eEEEEechhhcCHHHHHHHHHHhhcC----CCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence                   0000111223345555442    3568999999999999999998  88 56677754

>PRK13949 shikimate kinase; Provisional

Probab=97.07  E-value=0.00044  Score=62.74  Aligned_cols=30  Identities=33%  Similarity=0.430  Sum_probs=26.0

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcchhhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVEMKD  276 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~  276 (436)
                      +.++|.||||+|||++++.+|+.++..+.+
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~~~id   31 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLSFID   31 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCeec
Confidence            358999999999999999999999965544

>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]

Probab=97.06  E-value=0.00083  Score=71.60  Aligned_cols=140  Identities=19%  Similarity=0.219  Sum_probs=76.1

Q ss_pred             ccccChhHHHHHHHHHHHHHhhHHHHHHhC-CCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCC----------
Q 013823          213 TLAMDPELKQMILDDLDRFLRRKEFYRRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDG----------  281 (436)
Q Consensus       213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g-~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~----------  281 (436)
                      +|.+.+++|+-|.-  ..|=.....+...| ..---.+||+|.||||||-+.+.+++.+--........+          
T Consensus       430 sIye~edvKkglLL--qLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt  507 (804)
T KOG0478|consen  430 SIYELEDVKKGLLL--QLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT  507 (804)
T ss_pred             hhhcccchhhhHHH--HHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence            45677777776632  22333333333333 111134999999999999999999987651111000000          


Q ss_pred             ----------------------CCC---CCCcceeecceeeccc---------CcccCCCCeEEEEEecCCcC-------
Q 013823          282 ----------------------ASV---GSNTKLTLSGILNFID---------GLWSSCGDERIIVFTTNHKE-------  320 (436)
Q Consensus       282 ----------------------~~~---~~~~~~~~s~LL~~ld---------g~~~~~~~~~ivI~TTN~~~-------  320 (436)
                                            |-.   +..+..+.+.|+..|+         |+...-+...-|+++.|..+       
T Consensus       508 rd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k  587 (804)
T KOG0478|consen  508 KDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNK  587 (804)
T ss_pred             ecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCC
Confidence                                  000   0111122333444333         22222223345788888432       


Q ss_pred             ------CCCccccCCCceeEEE-EcCCCCHHHHHHHHHHHhcc
Q 013823          321 ------RIDPALLRPGRMDVHI-NMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       321 ------~lD~AllRpGR~d~~I-~~~~p~~~~r~~i~~~~l~~  356 (436)
                            .|+|.|++  |||.+. -+..||...=+.|..+....
T Consensus       588 ~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~HivsL  628 (804)
T KOG0478|consen  588 SIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHIVAL  628 (804)
T ss_pred             chhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHHHHh
Confidence                  37899999  999664 45888877555666665543

>PRK14532 adenylate kinase; Provisional

Probab=97.05  E-value=0.00042  Score=63.56  Aligned_cols=26  Identities=23%  Similarity=0.546  Sum_probs=23.5

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      .++|.||||+||||+++.||..+|..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~~   27 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGMV   27 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCe
Confidence            37899999999999999999999943

>PHA02774 E1; Provisional

Probab=97.05  E-value=0.00076  Score=71.57  Aligned_cols=30  Identities=37%  Similarity=0.706  Sum_probs=27.1

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |.|.++.++||||||||||+++.+|++.++
T Consensus       430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~  459 (613)
T PHA02774        430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLK  459 (613)
T ss_pred             cCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            556667899999999999999999999986

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=97.04  E-value=0.00041  Score=62.04  Aligned_cols=27  Identities=33%  Similarity=0.651  Sum_probs=23.5

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVEMK  275 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~~~  275 (436)
                      ++|.||||||||++++.+++.++..+.
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v   27 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFI   27 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence            578999999999999999999985443

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK07276 DNA polymerase III subunit delta'; Validated

Probab=97.04  E-value=0.0057  Score=60.25  Aligned_cols=50  Identities=18%  Similarity=0.230  Sum_probs=34.6

Q ss_pred             cceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHH
Q 013823          293 SGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLA  350 (436)
Q Consensus       293 s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~  350 (436)
                      +.||+.++.-    +.+.++|++|+.++.|-|.+++  |+ .+|.|+. +.+....++
T Consensus       122 NaLLKtLEEP----p~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L  171 (290)
T PRK07276        122 NSLLKVIEEP----QSEIYIFLLTNDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLL  171 (290)
T ss_pred             HHHHHHhcCC----CCCeEEEEEECChhhCchHHHH--cc-eeeeCCC-cHHHHHHHH
Confidence            3355555442    3458899999999999999999  98 6788876 444433333

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.03  E-value=0.00031  Score=68.83  Aligned_cols=62  Identities=26%  Similarity=0.426  Sum_probs=43.3

Q ss_pred             Ccc-cccChhHHHHHHHHHHHHHhhHHHHHHhC-------CCC-cceeeEeCCCCCChhHHHHHHHHHhcchhhccc
Q 013823          211 FDT-LAMDPELKQMILDDLDRFLRRKEFYRRVG-------KAW-KRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ  278 (436)
Q Consensus       211 ~~~-i~g~~~~k~~i~~~l~~~l~~~~~~~~~g-------~~~-~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~  278 (436)
                      +|+ |+|++..|+.+.-.+-.      .|+++.       +.. +..+||.||.|||||.||+.+|..+++++.-.+
T Consensus        59 Ld~YVIGQe~AKKvLsVAVYN------HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiAD  129 (408)
T COG1219          59 LDEYVIGQEQAKKVLSVAVYN------HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIAD  129 (408)
T ss_pred             hhhheecchhhhceeeeeehh------HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeecc
Confidence            454 67888888766443332      233332       112 346999999999999999999999998775443

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=97.01  E-value=0.0026  Score=63.09  Aligned_cols=100  Identities=15%  Similarity=0.144  Sum_probs=64.8

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhcch---------------hhcccCCCC---------------C-C---------
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLSVE---------------MKDRQNDGA---------------S-V---------  284 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~---------------~~~r~~~~~---------------~-~---------  284 (436)
                      .+..|||+|+.|.||+.+++++|+.+...               ..+......               . .         
T Consensus        17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII   96 (299)
T PRK07132         17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKILII   96 (299)
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCcccCCceEEEE
Confidence            45679999999999999999999987210               011000000               0 0         


Q ss_pred             ---CCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHH
Q 013823          285 ---GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLAS  351 (436)
Q Consensus       285 ---~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~  351 (436)
                         +.......+.||..|+..    ++..++|++|+.++.|-|.+.+  |+ .+++|+.++.++....+.
T Consensus        97 ~~~e~m~~~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~~l~~~l~  159 (299)
T PRK07132         97 KNIEKTSNSLLNALLKTIEEP----PKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQKILAKLL  159 (299)
T ss_pred             ecccccCHHHHHHHHHHhhCC----CCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHHHHHHHHH
Confidence               001111233455566553    3457888888888999999988  77 678999998887665444

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.01  E-value=0.00043  Score=58.64  Aligned_cols=23  Identities=30%  Similarity=0.560  Sum_probs=21.4

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |+|.|+||+||||+|+.|+..++
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~~   23 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERLG   23 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CEEECCCCCCHHHHHHHHHHHHC
Confidence            67999999999999999999975

...

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=97.01  E-value=0.00049  Score=60.62  Aligned_cols=27  Identities=30%  Similarity=0.453  Sum_probs=23.7

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVEMK  275 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~~~  275 (436)
                      ++|.||||+|||++++.++..++....
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~~~~~i   28 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERLGAPFI   28 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence            689999999999999999999885443

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.00  E-value=0.00043  Score=62.62  Aligned_cols=29  Identities=38%  Similarity=0.571  Sum_probs=20.6

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      .++.++|+||||+|||++++++...+...
T Consensus        23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~~~   51 (185)
T PF13191_consen   23 SPRNLLLTGESGSGKTSLLRALLDRLAER   51 (185)
T ss_dssp             ----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            34789999999999999999998877644

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=97.00  E-value=0.00054  Score=59.68  Aligned_cols=30  Identities=30%  Similarity=0.494  Sum_probs=26.5

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcchhhccc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVEMKDRQ  278 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~~~~r~  278 (436)
                      +.+.||||||||++|+.+|..+++++.+..
T Consensus         2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~   31 (147)
T cd02020           2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG   31 (147)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence            578999999999999999999997776554

>PRK09183 transposase/IS protein; Provisional

Probab=96.99  E-value=0.0005  Score=66.75  Aligned_cols=25  Identities=32%  Similarity=0.558  Sum_probs=22.4

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHh
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      ..+++|+||||||||+|+.+|+..+
T Consensus       102 ~~~v~l~Gp~GtGKThLa~al~~~a  126 (259)
T PRK09183        102 NENIVLLGPSGVGKTHLAIALGYEA  126 (259)
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence            4679999999999999999998765

>PRK00625 shikimate kinase; Provisional

Probab=96.97  E-value=0.00051  Score=62.61  Aligned_cols=29  Identities=38%  Similarity=0.566  Sum_probs=25.3

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcchhhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVEMKD  276 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~~~~  276 (436)
                      .++|.|+||+|||++++.+|+.++..+.+
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id   30 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLPFFD   30 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            37899999999999999999999965543

>PF13245 AAA_19: Part of AAA domain

Probab=96.96  E-value=0.00074  Score=52.93  Aligned_cols=23  Identities=48%  Similarity=0.885  Sum_probs=15.8

Q ss_pred             eeeEeCCCCCChhH-HHHHHHHHh
Q 013823          248 GYLLYGPPGTGKSS-LIAAMANYL  270 (436)
Q Consensus       248 g~LL~GPpGtGKT~-la~aiA~~l  270 (436)
                      -+++.||||||||+ +++.++..+
T Consensus        12 ~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   12 LFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH
Confidence            35569999999995 555554443

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.95  E-value=0.00059  Score=62.16  Aligned_cols=26  Identities=19%  Similarity=0.381  Sum_probs=23.2

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      -+++.||||+||||+++.+|..+|..
T Consensus         5 ii~i~G~~GsGKsTl~~~l~~~~g~~   30 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIVEKYGFT   30 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            47889999999999999999998843

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PLN03210 Resistant to P

Probab=96.95  E-value=0.0027  Score=74.20  Aligned_cols=58  Identities=21%  Similarity=0.269  Sum_probs=43.5

Q ss_pred             cccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          203 INLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       203 ~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ....++..+++++|.++..++|...+.           .+....+-+-++||+|+||||||+++++.+.
T Consensus       175 l~~~~~~~~~~~vG~~~~l~~l~~lL~-----------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~  232 (1153)
T PLN03210        175 LNLTPSNDFEDFVGIEDHIAKMSSLLH-----------LESEEVRMVGIWGSSGIGKTTIARALFSRLS  232 (1153)
T ss_pred             hccccCcccccccchHHHHHHHHHHHc-----------cccCceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence            334556678899998888887766442           1223346688999999999999999988765

syringae 6; Provisional

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=96.93  E-value=0.00062  Score=62.43  Aligned_cols=25  Identities=36%  Similarity=0.687  Sum_probs=23.0

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcch
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      ++|.||||+|||++++.||..+|..
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~~~   26 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYGLP   26 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCe
Confidence            7899999999999999999999844

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=96.93  E-value=0.001  Score=60.32  Aligned_cols=47  Identities=23%  Similarity=0.236  Sum_probs=32.3

Q ss_pred             cccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          214 LAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       214 i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |+|.....+.+.+.+....           ..+..+||+|++||||+.+|++|-+...
T Consensus         1 liG~s~~m~~~~~~~~~~a-----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~   47 (168)
T PF00158_consen    1 LIGESPAMKRLREQAKRAA-----------SSDLPVLITGETGTGKELLARAIHNNSP   47 (168)
T ss_dssp             SS--SHHHHHHHHHHHHHT-----------TSTS-EEEECSTTSSHHHHHHHHHHCST
T ss_pred             CEeCCHHHHHHHHHHHHHh-----------CCCCCEEEEcCCCCcHHHHHHHHHHhhh
Confidence            3555556666666555433           2347799999999999999999988554

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>PRK06762 hypothetical protein; Provisional

Probab=96.93  E-value=0.00071  Score=60.69  Aligned_cols=26  Identities=19%  Similarity=0.425  Sum_probs=23.2

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++-++|.|+||+||||+|+.+++.++
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~   27 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLG   27 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45688999999999999999999984

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.89  E-value=0.00086  Score=51.37  Aligned_cols=22  Identities=32%  Similarity=0.525  Sum_probs=20.4

Q ss_pred             eeEeCCCCCChhHHHHHHHHHh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      +.+.|+||+|||+++++++..+
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5688999999999999999987

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=96.87  E-value=0.00081  Score=60.85  Aligned_cols=31  Identities=32%  Similarity=0.413  Sum_probs=27.8

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcchhhcc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVEMKDR  277 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r  277 (436)
                      +.+.|.|++|+||||+.+++|+.|+.++.+.
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~   33 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDT   33 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCCCcccc
Confidence            4689999999999999999999999777654

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=96.86  E-value=0.00071  Score=60.29  Aligned_cols=27  Identities=26%  Similarity=0.550  Sum_probs=23.7

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVEMK  275 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~~~  275 (436)
                      +-+.|||||||||+++-||..+|+.+.
T Consensus         3 ItIsG~pGsG~TTva~~lAe~~gl~~v   29 (179)
T COG1102           3 ITISGLPGSGKTTVARELAEHLGLKLV   29 (179)
T ss_pred             EEeccCCCCChhHHHHHHHHHhCCcee
Confidence            557899999999999999999996554

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.86  E-value=0.00065  Score=57.97  Aligned_cols=25  Identities=44%  Similarity=0.817  Sum_probs=20.5

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.++++||||+|||++++.++..+.
T Consensus         5 ~~~~i~G~~G~GKT~~~~~~~~~~~   29 (131)
T PF13401_consen    5 RILVISGPPGSGKTTLIKRLARQLN   29 (131)
T ss_dssp             --EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred             cccEEEcCCCCCHHHHHHHHHHHhH
Confidence            5688999999999999999999874

>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]

Probab=96.86  E-value=0.004  Score=66.14  Aligned_cols=142  Identities=16%  Similarity=0.242  Sum_probs=78.6

Q ss_pred             CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCc--ceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC------
Q 013823          211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWK--RGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA------  282 (436)
Q Consensus       211 ~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~--rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~------  282 (436)
                      |-.|.|.+.+|.-|.-   ..+..-..+..-|.+.+  -.+|+.|.||||||-+.++.++.+.-...-......      
T Consensus       344 ~PsIyGhe~VK~GilL---~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTa  420 (764)
T KOG0480|consen  344 FPSIYGHELVKAGILL---SLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTA  420 (764)
T ss_pred             CccccchHHHHhhHHH---HHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceE
Confidence            5567777777776632   22222222222222221  239999999999999999999987621111100000      


Q ss_pred             --------------------------CCCCCcceee---cceeecccC---------cccCCCCeEEEEEecCCcC----
Q 013823          283 --------------------------SVGSNTKLTL---SGILNFIDG---------LWSSCGDERIIVFTTNHKE----  320 (436)
Q Consensus       283 --------------------------~~~~~~~~~~---s~LL~~ldg---------~~~~~~~~~ivI~TTN~~~----  320 (436)
                                                -.++..+...   -.++.+|+.         +...-+..--|++++|...    
T Consensus       421 aVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYd  500 (764)
T KOG0480|consen  421 AVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYD  500 (764)
T ss_pred             EEEecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccc
Confidence                                      0001111111   112233321         1111111234678888543    


Q ss_pred             ---------CCCccccCCCceeE-EEEcCCCCHHHHHHHHHHHhccc
Q 013823          321 ---------RIDPALLRPGRMDV-HINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       321 ---------~lD~AllRpGR~d~-~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                               .+++++++  |||. .|.+.-|++..=..|.++.+..+
T Consensus       501 R~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h  545 (764)
T KOG0480|consen  501 RKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLH  545 (764)
T ss_pred             cccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHh
Confidence                     37889999  9995 56779999988788888887654

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=96.86  E-value=0.00091  Score=60.77  Aligned_cols=26  Identities=35%  Similarity=0.448  Sum_probs=23.3

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      +-++|.||||+||||++++++..++.
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~~~   28 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVLAE   28 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            56899999999999999999998763

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=96.85  E-value=0.002  Score=64.15  Aligned_cols=55  Identities=29%  Similarity=0.327  Sum_probs=39.7

Q ss_pred             cChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823          216 MDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK  275 (436)
Q Consensus       216 g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~  275 (436)
                      +.++.++.+.+.+...+....     -..++..+.|.|+||||||++++.+|..+|..+.
T Consensus       108 l~~~~~~~~~~~l~~~~~~~~-----~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~i  162 (309)
T PRK08154        108 ASPAQLARVRDALSGMLGAGR-----RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFV  162 (309)
T ss_pred             CCHHHHHHHHHHHHHHHhhhh-----hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence            445566666666655443221     2355677999999999999999999999996554

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=96.84  E-value=0.0022  Score=64.35  Aligned_cols=53  Identities=30%  Similarity=0.352  Sum_probs=41.1

Q ss_pred             Cc-ccccChhHHHHHHHHHHHHHhhHHHHHHhCCC-CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          211 FD-TLAMDPELKQMILDDLDRFLRRKEFYRRVGKA-WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       211 ~~-~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~-~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |+ ++.|.++..++|.+++...        ..|.. .++-++|.||+|+|||++++.+.+.+.
T Consensus        59 f~~~~~G~~~~i~~lV~~fk~A--------A~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le  113 (358)
T PF08298_consen   59 FEDEFYGMEETIERLVNYFKSA--------AQGLEERKRILLLLGPVGGGKSSLAELLKRGLE  113 (358)
T ss_pred             ccccccCcHHHHHHHHHHHHHH--------HhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            55 7899999999998876632        22333 345678999999999999999998776

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>PRK06217 hypothetical protein; Validated

Probab=96.84  E-value=0.00082  Score=61.55  Aligned_cols=99  Identities=16%  Similarity=0.124  Sum_probs=54.1

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCCCC---Ccceeecceeecc-cCcccCCCCeEEEEEecCCcCCCC
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASVGS---NTKLTLSGILNFI-DGLWSSCGDERIIVFTTNHKERID  323 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~~~---~~~~~~s~LL~~l-dg~~~~~~~~~ivI~TTN~~~~lD  323 (436)
                      -|+|.|+||+||||++++||..++++..+.+.--.....   .........+..+ +.+..  ++..||  .-+..... 
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi--~G~~~~~~-   77 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPPFTTKRPPEERLRLLLEDLRP--REGWVL--SGSALGWG-   77 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCCccccCCHHHHHHHHHHHHhc--CCCEEE--EccHHHHH-
Confidence            389999999999999999999999665433221110000   0011111111111 11111  222332  23333222 


Q ss_pred             ccccCCCceeEEEEcCCCCHHHHHHHHHHH
Q 013823          324 PALLRPGRMDVHINMSYCTVHGFKVLASNY  353 (436)
Q Consensus       324 ~AllRpGR~d~~I~~~~p~~~~r~~i~~~~  353 (436)
                      ..+..  ++|..|.+..|.......+..+.
T Consensus        78 ~~~~~--~~d~~i~Ld~~~~~~~~Rl~~R~  105 (183)
T PRK06217         78 DPLEP--LFDLVVFLTIPPELRLERLRLRE  105 (183)
T ss_pred             HHHHh--hCCEEEEEECCHHHHHHHHHcCc
Confidence            23444  78999999998888777777654

>PRK13946 shikimate kinase; Provisional

Probab=96.83  E-value=0.00093  Score=61.33  Aligned_cols=33  Identities=33%  Similarity=0.453  Sum_probs=28.6

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcchhhccc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ  278 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~  278 (436)
                      ++.++|.|+||||||++++.+|+.+|.++.+.+
T Consensus        10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D   42 (184)
T PRK13946         10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD   42 (184)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence            467999999999999999999999997665543

>PRK14527 adenylate kinase; Provisional

Probab=96.83  E-value=0.001  Score=61.39  Aligned_cols=27  Identities=30%  Similarity=0.630  Sum_probs=24.2

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      +.-+++.||||+|||++++.+|..++.
T Consensus         6 ~~~i~i~G~pGsGKsT~a~~La~~~~~   32 (191)
T PRK14527          6 NKVVIFLGPPGAGKGTQAERLAQELGL   32 (191)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            455899999999999999999999884

>PRK02496 adk adenylate kinase; Provisional

Probab=96.83  E-value=0.00085  Score=61.33  Aligned_cols=24  Identities=33%  Similarity=0.751  Sum_probs=22.5

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      +++.||||+|||++++.||..++.
T Consensus         4 i~i~G~pGsGKst~a~~la~~~~~   27 (184)
T PRK02496          4 LIFLGPPGAGKGTQAVVLAEHLHI   27 (184)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            789999999999999999999984

>PRK13406 bchD magnesium chelatase subunit D; Provisional

Probab=96.83  E-value=0.0017  Score=69.99  Aligned_cols=97  Identities=18%  Similarity=0.189  Sum_probs=60.9

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcc--hhhccc--------------------CC----CC-------------CCCCC
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSV--EMKDRQ--------------------ND----GA-------------SVGSN  287 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~--~~~~r~--------------------~~----~~-------------~~~~~  287 (436)
                      .|+||.|++|||||+++++++..+..  ++...-                    ..    ..             ..+..
T Consensus        26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~  105 (584)
T PRK13406         26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL  105 (584)
T ss_pred             ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence            68999999999999999999998752  111000                    00    00             01112


Q ss_pred             cceeecceeeccc---------CcccCCCCeEEEEEecCCc---CCCCccccCCCceeEEEEcCCCCHHH
Q 013823          288 TKLTLSGILNFID---------GLWSSCGDERIIVFTTNHK---ERIDPALLRPGRMDVHINMSYCTVHG  345 (436)
Q Consensus       288 ~~~~~s~LL~~ld---------g~~~~~~~~~ivI~TTN~~---~~lD~AllRpGR~d~~I~~~~p~~~~  345 (436)
                      ...+++.|++.|+         |.........++|+|-|..   ..|+++++.  ||+.+|.+++|+..+
T Consensus       106 ~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~~~~~  173 (584)
T PRK13406        106 EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGLALRD  173 (584)
T ss_pred             CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCCChHH
Confidence            3334445555553         2222222346777775433   458999999  999999999998764

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=96.82  E-value=0.00089  Score=58.86  Aligned_cols=29  Identities=38%  Similarity=0.557  Sum_probs=25.5

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVEMK  275 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~  275 (436)
                      -.+|+.|-||||||+++..||..+++...
T Consensus         8 PNILvtGTPG~GKstl~~~lae~~~~~~i   36 (176)
T KOG3347|consen    8 PNILVTGTPGTGKSTLAERLAEKTGLEYI   36 (176)
T ss_pred             CCEEEeCCCCCCchhHHHHHHHHhCCceE
Confidence            36999999999999999999999995543

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.81  E-value=0.0012  Score=57.45  Aligned_cols=30  Identities=27%  Similarity=0.468  Sum_probs=25.7

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      +...-++|.|+.|+|||++++++++.++..
T Consensus        20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150        20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            344568899999999999999999999853

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins

Probab=96.80  E-value=0.0023  Score=59.63  Aligned_cols=30  Identities=23%  Similarity=0.287  Sum_probs=23.9

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |......++|.|+.|+|||++++.|+.+.-
T Consensus        48 g~k~d~~lvl~G~QG~GKStf~~~L~~~~~   77 (198)
T PF05272_consen   48 GCKNDTVLVLVGKQGIGKSTFFRKLGPEYF   77 (198)
T ss_pred             CCcCceeeeEecCCcccHHHHHHHHhHHhc
Confidence            444445678999999999999999977643

>PRK14530 adenylate kinase; Provisional

Probab=96.80  E-value=0.001  Score=62.59  Aligned_cols=27  Identities=37%  Similarity=0.600  Sum_probs=24.3

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      .++|.||||+||||+++.||..+++..
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~~~~~   31 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEFGVEH   31 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence            589999999999999999999999543

>PRK13948 shikimate kinase; Provisional

Probab=96.80  E-value=0.0011  Score=60.90  Aligned_cols=34  Identities=26%  Similarity=0.147  Sum_probs=29.0

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR  277 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r  277 (436)
                      +.++.++|.|++|||||++++.+|+.++..+.+.
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~   41 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDT   41 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEC
Confidence            3457899999999999999999999999665543

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.78  E-value=0.00095  Score=58.55  Aligned_cols=23  Identities=35%  Similarity=0.752  Sum_probs=20.9

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++++||||||||+++..++..+.
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~   24 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIA   24 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999998774

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=96.78  E-value=0.001  Score=60.98  Aligned_cols=27  Identities=41%  Similarity=0.720  Sum_probs=23.7

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      -+++.||||+||||+|+.||+.+++.-
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~i~h   28 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLGLPH   28 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence            378999999999999999999988443

>PLN02200 adenylate kinase family protein

Probab=96.77  E-value=0.0012  Score=63.17  Aligned_cols=27  Identities=19%  Similarity=0.335  Sum_probs=24.0

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      +.-+++.||||||||++|+.||..+|+
T Consensus        43 ~~ii~I~G~PGSGKsT~a~~La~~~g~   69 (234)
T PLN02200         43 PFITFVLGGPGSGKGTQCEKIVETFGF   69 (234)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            345889999999999999999999994

>PRK06851 hypothetical protein; Provisional

Probab=96.75  E-value=0.0049  Score=62.63  Aligned_cols=82  Identities=26%  Similarity=0.381  Sum_probs=50.6

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP  324 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~  324 (436)
                      ..+-++|.||||||||++++.++..+...-......-+..+          -+.+|++.-.  +-.+.|+-.+.|..+||
T Consensus        29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d----------~~slDgviip--~l~~aivDgtaph~~~P   96 (367)
T PRK06851         29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSD----------NDSLDGVIIP--ELKIAILDGTAPHVVDP   96 (367)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCC----------CCceeeEEec--CCCEEEEcCCCcCcCCC
Confidence            34679999999999999999999887432111110000000          1234554321  22455566557788888


Q ss_pred             cccCCCceeEEEEcCC
Q 013823          325 ALLRPGRMDVHINMSY  340 (436)
Q Consensus       325 AllRpGR~d~~I~~~~  340 (436)
                      .  +||=.|..|.+..
T Consensus        97 ~--~pgav~eiinL~~  110 (367)
T PRK06851         97 K--APGAVEEIINLGD  110 (367)
T ss_pred             C--CCCcceEEEEHHH
Confidence            5  4888888888875

>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]

Probab=96.75  E-value=0.0033  Score=70.24  Aligned_cols=151  Identities=17%  Similarity=0.194  Sum_probs=89.5

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHh-hHHHHHHhCCCCc-c-eeeEeCCCCCChhHHHHHHHHHhcchhhcccCCC
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLR-RKEFYRRVGKAWK-R-GYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDG  281 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~-~~~~~~~~g~~~~-r-g~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~  281 (436)
                      ...|.....+.+....-..+.+.+...-. .+..|...+.... . .+|++||||.|||+.+.++|.++|..+.......
T Consensus       313 k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~  392 (871)
T KOG1968|consen  313 KYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASD  392 (871)
T ss_pred             ccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCccc
Confidence            45566667788877766666666654421 1222333222111 2 3699999999999999999999995554333221


Q ss_pred             CC-----------------CC----------CCcceeecceeecccCcccCCC------------CeEEEEEecCCcCCC
Q 013823          282 AS-----------------VG----------SNTKLTLSGILNFIDGLWSSCG------------DERIIVFTTNHKERI  322 (436)
Q Consensus       282 ~~-----------------~~----------~~~~~~~s~LL~~ldg~~~~~~------------~~~ivI~TTN~~~~l  322 (436)
                      ..                 ..          .......--|++..|++.....            ..+-+|+|+|..+..
T Consensus       393 ~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~ks~~Piv~~cndr~~p  472 (871)
T KOG1968|consen  393 VRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCKKSSRPLVCTCNDRNLP  472 (871)
T ss_pred             cccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHHHHhccCCeEEEecCCCCc
Confidence            10                 00          0011122335666676644100            124588999987766


Q ss_pred             CccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          323 DPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       323 D~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      ..-.+.  |-+.-|+|+.|+.+.+..-+..++...
T Consensus       473 ~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se  505 (871)
T KOG1968|consen  473 KSRALS--RACSDLRFSKPSSELIRSRIMSICKSE  505 (871)
T ss_pred             cccchh--hhcceeeecCCcHHHHHhhhhhhhccc
Confidence            653333  555778999999998776666665543

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=96.74  E-value=0.0012  Score=60.06  Aligned_cols=32  Identities=41%  Similarity=0.634  Sum_probs=27.2

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcchhhcc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR  277 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r  277 (436)
                      ++.++|.||+|+|||++++.+|+.++..+.+.
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~   35 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS   35 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcCCcEEEC
Confidence            45699999999999999999999998665443

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.73  E-value=0.0013  Score=61.21  Aligned_cols=29  Identities=31%  Similarity=0.544  Sum_probs=24.8

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++..+-++++||||||||+++..+|...
T Consensus         8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~   36 (209)
T TIGR02237         8 GVERGTITQIYGPPGSGKTNICMILAVNA   36 (209)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56777779999999999999999887654

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain

Probab=96.73  E-value=0.01  Score=58.89  Aligned_cols=54  Identities=24%  Similarity=0.279  Sum_probs=38.4

Q ss_pred             cccc-cChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          212 DTLA-MDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       212 ~~i~-g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      +++. +++++++.+.+.+...+...       ....+-++|+|+.|+|||++.+.|...+|-
T Consensus        48 ~~~~~~d~~~~~~l~~~lg~~L~~~-------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~  102 (304)
T TIGR01613        48 LETFGGDNELIEYLQRVIGYSLTGN-------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGD  102 (304)
T ss_pred             HHHhCCCHHHHHHHHHHHhHHhcCC-------CCceEEEEEECCCCCcHHHHHHHHHHHhCh
Confidence            4443 35566777766665444321       344567899999999999999999998883

This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.

>TIGR01351 adk adenylate kinases

Probab=96.70  E-value=0.0012  Score=61.84  Aligned_cols=24  Identities=33%  Similarity=0.693  Sum_probs=22.5

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      +++.||||+|||++|+.||..+|+
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~   25 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGL   25 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCC
Confidence            789999999999999999999984

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK14528 adenylate kinase; Provisional

Probab=96.69  E-value=0.0013  Score=60.46  Aligned_cols=26  Identities=31%  Similarity=0.675  Sum_probs=23.4

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      .+++.||||+|||++++.+|..+|+.
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~~~~   28 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERLSIP   28 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            48899999999999999999998843

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=96.68  E-value=0.0014  Score=57.12  Aligned_cols=45  Identities=29%  Similarity=0.386  Sum_probs=30.9

Q ss_pred             cChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          216 MDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       216 g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |.....+.+.+.+....           .....+||+|+|||||+++|++|....+
T Consensus         2 G~S~~~~~l~~~l~~~a-----------~~~~pvli~GE~GtGK~~~A~~lh~~~~   46 (138)
T PF14532_consen    2 GKSPAMRRLRRQLERLA-----------KSSSPVLITGEPGTGKSLLARALHRYSG   46 (138)
T ss_dssp             -SCHHHHHHHHHHHHHH-----------CSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred             CCCHHHHHHHHHHHHHh-----------CCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence            33444555555555333           2346799999999999999999998766

>PRK00279 adk adenylate kinase; Reviewed

Probab=96.68  E-value=0.0013  Score=61.93  Aligned_cols=25  Identities=32%  Similarity=0.655  Sum_probs=23.2

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcch
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      ++++||||+|||++++.||..++..
T Consensus         3 I~v~G~pGsGKsT~a~~la~~~~~~   27 (215)
T PRK00279          3 LILLGPPGAGKGTQAKFIAEKYGIP   27 (215)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCc
Confidence            7899999999999999999999943

>PF05729 NACHT: NACHT domain

Probab=96.66  E-value=0.0014  Score=57.79  Aligned_cols=25  Identities=40%  Similarity=0.693  Sum_probs=22.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |-++|+|+||+|||++++.++..+.
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~   25 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLA   25 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHH
Confidence            3578999999999999999998776

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=96.66  E-value=0.00089  Score=63.34  Aligned_cols=23  Identities=48%  Similarity=0.846  Sum_probs=20.1

Q ss_pred             cceeeEeCCCCCChhHHHHHHHH
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      +.-+|+||+||+|||++|+.+++
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~~   34 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLPG   34 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcCC
Confidence            34599999999999999999874

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=96.65  E-value=0.0015  Score=58.92  Aligned_cols=31  Identities=29%  Similarity=0.437  Sum_probs=26.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcchhhcc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVEMKDR  277 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r  277 (436)
                      ..++|.|+||||||++++.+|..+|..+.+.
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~   33 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDT   33 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence            3588999999999999999999999665543

>PRK08233 hypothetical protein; Provisional

Probab=96.63  E-value=0.0014  Score=59.27  Aligned_cols=24  Identities=21%  Similarity=0.292  Sum_probs=21.8

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -+.+.|+||+||||+|+.||..++
T Consensus         5 iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          5 IITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCC
Confidence            466789999999999999999986

>PRK06547 hypothetical protein; Provisional

Probab=96.60  E-value=0.0021  Score=58.55  Aligned_cols=32  Identities=25%  Similarity=0.342  Sum_probs=26.5

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK  275 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~  275 (436)
                      ..+.-|++.||+|||||++++.+|+.++....
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~   44 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLV   44 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence            34556889999999999999999999885543

>cd01394 radB RadB

Probab=96.60  E-value=0.0018  Score=60.80  Aligned_cols=29  Identities=34%  Similarity=0.551  Sum_probs=25.4

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++..+-++++||||||||+++..+|.+.
T Consensus        15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~   43 (218)
T cd01394          15 GVERGTVTQVYGPPGTGKTNIAIQLAVET   43 (218)
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56666779999999999999999999776

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=96.60  E-value=0.0018  Score=58.73  Aligned_cols=26  Identities=23%  Similarity=0.342  Sum_probs=23.4

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.-++|.|+||+||||+++++++.+.
T Consensus         7 ~~~I~i~G~~GsGKst~a~~l~~~l~   32 (176)
T PRK05541          7 GYVIWITGLAGSGKTTIAKALYERLK   32 (176)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            45688999999999999999999886

>PRK13764 ATPase; Provisional

Probab=96.60  E-value=0.0022  Score=69.02  Aligned_cols=26  Identities=38%  Similarity=0.787  Sum_probs=24.1

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+++|+.||||+||||+++|++.++.
T Consensus       257 ~~~ILIsG~TGSGKTTll~AL~~~i~  282 (602)
T PRK13764        257 AEGILIAGAPGAGKSTFAQALAEFYA  282 (602)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            47899999999999999999999886

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.59  E-value=0.0016  Score=59.11  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=22.3

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      -+++.||||+|||+++++|+..++.
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~~~~   27 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARARLAG   27 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCc
Confidence            4789999999999999999998763

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=96.58  E-value=0.0016  Score=58.79  Aligned_cols=24  Identities=25%  Similarity=0.498  Sum_probs=21.7

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcch
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      +++.|.|||||||+++.++ ++|..
T Consensus         3 I~ITGTPGvGKTT~~~~L~-~lg~~   26 (180)
T COG1936           3 IAITGTPGVGKTTVCKLLR-ELGYK   26 (180)
T ss_pred             EEEeCCCCCchHHHHHHHH-HhCCc
Confidence            6899999999999999999 88843

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=96.57  E-value=0.0016  Score=63.16  Aligned_cols=28  Identities=25%  Similarity=0.194  Sum_probs=24.0

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      |++....+|++||||||||+++..+|..
T Consensus        32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~   59 (259)
T TIGR03878        32 GIPAYSVINITGVSDTGKSLMVEQFAVT   59 (259)
T ss_pred             CeECCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            5666777999999999999999988765

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=96.56  E-value=0.002  Score=62.63  Aligned_cols=54  Identities=22%  Similarity=0.405  Sum_probs=39.5

Q ss_pred             CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      +.+++++...+...+.+.+.+....           ...+.+++.||+|+|||++++++..++..
T Consensus       100 ~~sle~l~~~~~~~~~~~~~l~~~v-----------~~~~~ili~G~tGSGKTT~l~all~~i~~  153 (270)
T PF00437_consen  100 PFSLEDLGESGSIPEEIAEFLRSAV-----------RGRGNILISGPTGSGKTTLLNALLEEIPP  153 (270)
T ss_dssp             --CHCCCCHTHHCHHHHHHHHHHCH-----------HTTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred             cccHhhccCchhhHHHHHHHHhhcc-----------ccceEEEEECCCccccchHHHHHhhhccc
Confidence            4488888887777766666555322           12467999999999999999999887653

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=96.56  E-value=0.0013  Score=58.10  Aligned_cols=22  Identities=32%  Similarity=0.718  Sum_probs=20.5

Q ss_pred             EeCCCCCChhHHHHHHHHHhcc
Q 013823          251 LYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       251 L~GPpGtGKT~la~aiA~~l~~  272 (436)
                      |.||||+|||++|+.||..+|+
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~   22 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGL   22 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTS
T ss_pred             CcCCCCCChHHHHHHHHHhcCc
Confidence            5799999999999999999993

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PTZ00088 adenylate kinase 1; Provisional

Probab=96.55  E-value=0.0017  Score=61.84  Aligned_cols=26  Identities=23%  Similarity=0.590  Sum_probs=23.7

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      -++|.||||+||||+|+.+|+.+|+.
T Consensus         8 rIvl~G~PGsGK~T~a~~La~~~g~~   33 (229)
T PTZ00088          8 KIVLFGAPGVGKGTFAEILSKKENLK   33 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            38999999999999999999999943

>PRK04040 adenylate kinase; Provisional

Probab=96.54  E-value=0.0019  Score=59.72  Aligned_cols=24  Identities=25%  Similarity=0.509  Sum_probs=22.5

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHh
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      .-++++|+|||||||+++.++..+
T Consensus         3 ~~i~v~G~pG~GKtt~~~~l~~~l   26 (188)
T PRK04040          3 KVVVVTGVPGVGKTTVLNKALEKL   26 (188)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHh
Confidence            458899999999999999999999

>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A

Probab=96.52  E-value=0.0063  Score=58.08  Aligned_cols=27  Identities=41%  Similarity=0.571  Sum_probs=24.6

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ...|-.++||+|||||.+++++|..+|
T Consensus        31 ~~~~~~~~GpagtGKtetik~La~~lG   57 (231)
T PF12774_consen   31 LNLGGALSGPAGTGKTETIKDLARALG   57 (231)
T ss_dssp             TTTEEEEESSTTSSHHHHHHHHHHCTT
T ss_pred             cCCCCCCcCCCCCCchhHHHHHHHHhC
Confidence            346778999999999999999999999

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=96.52  E-value=0.0022  Score=61.33  Aligned_cols=28  Identities=36%  Similarity=0.386  Sum_probs=24.0

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      |++....+|++||||||||+++..++.+
T Consensus        17 G~~~gs~~lI~G~pGsGKT~la~~~l~~   44 (237)
T TIGR03877        17 GIPERNVVLLSGGPGTGKSIFSQQFLWN   44 (237)
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            6787888999999999999999876643

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PRK14526 adenylate kinase; Provisional

Probab=96.51  E-value=0.0019  Score=60.78  Aligned_cols=25  Identities=32%  Similarity=0.697  Sum_probs=22.8

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcch
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      ++|.||||+||||+++.||..++..
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~~~~   27 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNELNYY   27 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCc
Confidence            7899999999999999999998843

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=96.51  E-value=0.0039  Score=57.93  Aligned_cols=25  Identities=48%  Similarity=0.759  Sum_probs=21.8

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +..++.||||||||++++.++..+.
T Consensus        19 ~~~~l~G~aGtGKT~~l~~~~~~~~   43 (196)
T PF13604_consen   19 RVSVLQGPAGTGKTTLLKALAEALE   43 (196)
T ss_dssp             SEEEEEESTTSTHHHHHHHHHHHHH
T ss_pred             eEEEEEECCCCCHHHHHHHHHHHHH
Confidence            5678899999999999999887665

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=96.51  E-value=0.01  Score=65.38  Aligned_cols=50  Identities=24%  Similarity=0.383  Sum_probs=40.0

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -.+|-|+|-++-.+.+++.+.+             .-+..-+|.|+||+|||.++..+|...-
T Consensus       167 gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv  216 (786)
T COG0542         167 GKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIV  216 (786)
T ss_pred             CCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHh
Confidence            3588899998888887776652             2345678999999999999999998765

>PRK04182 cytidylate kinase; Provisional

Probab=96.49  E-value=0.002  Score=58.18  Aligned_cols=28  Identities=29%  Similarity=0.592  Sum_probs=24.9

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcchhhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVEMKD  276 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~~~~  276 (436)
                      ++|.|+||||||++++.+|..+|.++.+
T Consensus         3 I~i~G~~GsGKstia~~la~~lg~~~id   30 (180)
T PRK04182          3 ITISGPPGSGKTTVARLLAEKLGLKHVS   30 (180)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence            7899999999999999999999965544

>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.004  Score=69.35  Aligned_cols=53  Identities=25%  Similarity=0.337  Sum_probs=39.5

Q ss_pred             ccccChhHHHHHHHHHHHHHhhHHHHHHhCCC-CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKA-WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~-~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .|+|+++....|.+.+.....      .++.+ +.-.+||.||.|+|||-||+|+|..+-
T Consensus       563 ~V~gQ~eAv~aIa~AI~~sr~------gl~~~~~~awflflGpdgvGKt~lAkaLA~~~F  616 (898)
T KOG1051|consen  563 RVIGQDEAVAAIAAAIRRSRA------GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVF  616 (898)
T ss_pred             hccchHHHHHHHHHHHHhhhc------ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHc
Confidence            478888888888877764332      11222 344589999999999999999999875

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=96.47  E-value=0.002  Score=58.54  Aligned_cols=22  Identities=36%  Similarity=0.469  Sum_probs=19.4

Q ss_pred             eeEeCCCCCChhHHHHHHHHHh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      +|++||||||||+++..++.+.
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~   23 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAG   23 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHH
Confidence            6899999999999999887654

A related protein is found in archaea.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=96.44  E-value=0.0027  Score=59.99  Aligned_cols=29  Identities=31%  Similarity=0.512  Sum_probs=24.8

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++...-++++||||+|||+++..+|.+.
T Consensus        19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~   47 (225)
T PRK09361         19 GFERGTITQIYGPPGSGKTNICLQLAVEA   47 (225)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56666778999999999999999998754

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.44  E-value=0.0026  Score=58.46  Aligned_cols=27  Identities=26%  Similarity=0.629  Sum_probs=23.5

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ....+++.||+|+||||+++++++.+.
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            346799999999999999999998764

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK06851 hypothetical protein; Provisional

Probab=96.41  E-value=0.014  Score=59.38  Aligned_cols=78  Identities=24%  Similarity=0.328  Sum_probs=45.8

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP  324 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~  324 (436)
                      ..+-|+|.||||||||++++.++.++...-.....--|..+.          +.||++.-  .+-.+-|+..+.|..++|
T Consensus       213 ~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dP----------dslD~viI--Pel~~ai~d~t~ph~~~P  280 (367)
T PRK06851        213 VKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDP----------DSLDMVII--PELNFAIFDSTAPHEYFP  280 (367)
T ss_pred             cceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCC----------CCcceEEe--ccCCEEEEeCCCCcccCC
Confidence            346699999999999999999999874211111111111011          12333321  122456777777777877


Q ss_pred             cccCCCceeEEEEc
Q 013823          325 ALLRPGRMDVHINM  338 (436)
Q Consensus       325 AllRpGR~d~~I~~  338 (436)
                      ..  ||  |..|.+
T Consensus       281 ~~--~g--~e~i~l  290 (367)
T PRK06851        281 SR--EG--DEIIDM  290 (367)
T ss_pred             CC--Cc--ceeeec
Confidence            44  66  677766

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=96.40  E-value=0.0033  Score=72.75  Aligned_cols=106  Identities=21%  Similarity=0.276  Sum_probs=63.6

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcc--------------hhhcccCCCCCCC-------------------------C
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSV--------------EMKDRQNDGASVG-------------------------S  286 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~--------------~~~~r~~~~~~~~-------------------------~  286 (436)
                      .+++||-|.||.|||+|+.|+|+..|-              +++....+....+                         -
T Consensus      1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNL 1622 (4600)
T COG5271        1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINL 1622 (4600)
T ss_pred             CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhh
Confidence            478999999999999999999999991              2222111111000                         0


Q ss_pred             Ccceeeccee-----------ecccCcccCCCCeEEEEEecCCcC------CCCccccCCCceeEEEEcCCCCHHHHHHH
Q 013823          287 NTKLTLSGIL-----------NFIDGLWSSCGDERIIVFTTNHKE------RIDPALLRPGRMDVHINMSYCTVHGFKVL  349 (436)
Q Consensus       287 ~~~~~~s~LL-----------~~ldg~~~~~~~~~ivI~TTN~~~------~lD~AllRpGR~d~~I~~~~p~~~~r~~i  349 (436)
                      .++.++.+|-           -++|.... +..+..|++|-|.-+      .||..++-  || .+|.|...+.+....|
T Consensus      1623 aSQSVlEGLNacLDhR~eayIPEld~~f~-~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF-svV~~d~lt~dDi~~I 1698 (4600)
T COG5271        1623 ASQSVLEGLNACLDHRREAYIPELDKTFD-VHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF-SVVKMDGLTTDDITHI 1698 (4600)
T ss_pred             hHHHHHHHHHHHHhhccccccccccceee-ccCCeeeeeecCchhcCCCcccCCHHHhh--hh-heEEecccccchHHHH
Confidence            0111122211           12222221 233455666666432      58999998  99 5678888888887777


Q ss_pred             HHHHhc
Q 013823          350 ASNYLG  355 (436)
Q Consensus       350 ~~~~l~  355 (436)
                      +.+.+.
T Consensus      1699 a~~~yp 1704 (4600)
T COG5271        1699 ANKMYP 1704 (4600)
T ss_pred             HHhhCC
Confidence            777664

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.40  E-value=0.0018  Score=57.98  Aligned_cols=24  Identities=38%  Similarity=0.592  Sum_probs=19.2

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcch
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      |.|.|+||||||||+++|+.. |..
T Consensus         2 I~i~G~~stGKTTL~~~L~~~-g~~   25 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR-GYP   25 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH-T-E
T ss_pred             EEEECCCCCCHHHHHHHHHHc-CCe
Confidence            689999999999999999998 733

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=96.39  E-value=0.0025  Score=57.09  Aligned_cols=27  Identities=33%  Similarity=0.683  Sum_probs=24.0

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVEMK  275 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~~~  275 (436)
                      +.++|+||+|||++++.+|+.+|.+..
T Consensus         3 I~i~G~~GSGKstia~~la~~lg~~~~   29 (171)
T TIGR02173         3 ITISGPPGSGKTTVAKILAEKLSLKLI   29 (171)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCcee
Confidence            679999999999999999999995544

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PF13173 AAA_14: AAA domain

Probab=96.39  E-value=0.0029  Score=54.35  Aligned_cols=25  Identities=36%  Similarity=0.619  Sum_probs=22.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.++|+||+|||||++++.++..+.
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~   27 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLL   27 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc
Confidence            4588999999999999999998764

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.37  E-value=0.0026  Score=58.43  Aligned_cols=27  Identities=37%  Similarity=0.589  Sum_probs=23.5

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      .-+.|.||+|+||||+++.|+..++..
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~   29 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQREQTQ   29 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCe
Confidence            357899999999999999999988743

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=96.37  E-value=0.0026  Score=62.73  Aligned_cols=25  Identities=32%  Similarity=0.397  Sum_probs=22.8

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHh-c
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYL-S  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l-~  271 (436)
                      .-++|.|||||||||+|+.++..+ +
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~~~   28 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKNPK   28 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCC
Confidence            457899999999999999999998 5

>PRK00300 gmk guanylate kinase; Provisional

Probab=96.35  E-value=0.0032  Score=58.41  Aligned_cols=27  Identities=33%  Similarity=0.438  Sum_probs=23.9

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++.-+.|.||+|+|||+|++.+++.+.
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            446688999999999999999999875

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=96.34  E-value=0.0026  Score=61.22  Aligned_cols=23  Identities=43%  Similarity=0.668  Sum_probs=21.3

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++|.|+||+||||+|+++|..+.
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~   24 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLS   24 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999999874

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK06696 uridine kinase; Validated

Probab=96.33  E-value=0.0063  Score=57.58  Aligned_cols=26  Identities=15%  Similarity=0.258  Sum_probs=23.1

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.-|.+.|+||+||||+|+.|+..++
T Consensus        22 ~~iI~I~G~sgsGKSTlA~~L~~~l~   47 (223)
T PRK06696         22 PLRVAIDGITASGKTTFADELAEEIK   47 (223)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            44578899999999999999999984

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.33  E-value=0.0054  Score=59.73  Aligned_cols=49  Identities=22%  Similarity=0.358  Sum_probs=36.2

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .++++++..++..+.+.+.+.              .....+++.||+|+||||+++++..++.
T Consensus        57 ~~l~~lg~~~~~~~~l~~~~~--------------~~~GlilisG~tGSGKTT~l~all~~i~  105 (264)
T cd01129          57 LDLEKLGLKPENLEIFRKLLE--------------KPHGIILVTGPTGSGKTTTLYSALSELN  105 (264)
T ss_pred             CCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence            467888888887776644332              1123488999999999999999987764

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.33  E-value=0.0027  Score=58.91  Aligned_cols=23  Identities=35%  Similarity=0.639  Sum_probs=21.9

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++|.|+||+|||++|+-+|++|.
T Consensus         4 iIlTGyPgsGKTtfakeLak~L~   26 (261)
T COG4088           4 IILTGYPGSGKTTFAKELAKELR   26 (261)
T ss_pred             EEEecCCCCCchHHHHHHHHHHH
Confidence            78999999999999999999997

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=96.33  E-value=0.0029  Score=56.07  Aligned_cols=22  Identities=36%  Similarity=0.552  Sum_probs=20.9

Q ss_pred             eeEeCCCCCChhHHHHHHHHHh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      +++.|+||+|||++++.++..+
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l   23 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKL   23 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999988

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=96.32  E-value=0.0035  Score=59.66  Aligned_cols=28  Identities=32%  Similarity=0.354  Sum_probs=24.7

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      |++.+..++++||||||||+++..++.+
T Consensus        21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~   48 (234)
T PRK06067         21 GIPFPSLILIEGDHGTGKSVLSQQFVYG   48 (234)
T ss_pred             CCcCCcEEEEECCCCCChHHHHHHHHHH
Confidence            6777788999999999999999998754

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=96.32  E-value=0.03  Score=57.88  Aligned_cols=139  Identities=19%  Similarity=0.156  Sum_probs=87.5

Q ss_pred             CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc-------------
Q 013823          210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD-------------  276 (436)
Q Consensus       210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~-------------  276 (436)
                      .=+++.|-+..+..+.+++...+..         ..++++.+.|-||||||.+..-+-..+......             
T Consensus       148 ~p~~l~gRe~e~~~v~~F~~~hle~---------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~  218 (529)
T KOG2227|consen  148 PPGTLKGRELEMDIVREFFSLHLEL---------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTE  218 (529)
T ss_pred             CCCCccchHHHHHHHHHHHHhhhhc---------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccc
Confidence            3467888888888887777655532         345678899999999999887655444311100             


Q ss_pred             ---------------ccCCCCCC--------C-CCcceeecceeecccCcccC--------------CCCeEEEEEecCC
Q 013823          277 ---------------RQNDGASV--------G-SNTKLTLSGILNFIDGLWSS--------------CGDERIIVFTTNH  318 (436)
Q Consensus       277 ---------------r~~~~~~~--------~-~~~~~~~s~LL~~ldg~~~~--------------~~~~~ivI~TTN~  318 (436)
                                     ....+.+.        + ...+.++--.|++||-+...              .+..+++|+.+|.
T Consensus       219 ~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANs  298 (529)
T KOG2227|consen  219 ASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANS  298 (529)
T ss_pred             hHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhh
Confidence                           00000000        0 01122344456777765322              2345788999999


Q ss_pred             cCCCCccccC----CCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          319 KERIDPALLR----PGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       319 ~~~lD~AllR----pGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      .+.-|..|.|    -+.-...+.|++.+.++..+|+..-+...
T Consensus       299 lDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~  341 (529)
T KOG2227|consen  299 LDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE  341 (529)
T ss_pred             hhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc
Confidence            8877766643    23345678999999999999999887654

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=96.32  E-value=0.0033  Score=60.89  Aligned_cols=29  Identities=31%  Similarity=0.398  Sum_probs=25.1

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++..+.+|++|+||||||+++..++...
T Consensus        19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~   47 (260)
T COG0467          19 GLPRGSVVLITGPPGTGKTIFALQFLYEG   47 (260)
T ss_pred             CCcCCcEEEEEcCCCCcHHHHHHHHHHHH
Confidence            57778889999999999999998887654

>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.31  E-value=0.0018  Score=65.87  Aligned_cols=32  Identities=38%  Similarity=0.548  Sum_probs=28.1

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcchhhcc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR  277 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r  277 (436)
                      +..+||.||.|+|||.||+.+|.-+++++.-.
T Consensus       226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIc  257 (564)
T KOG0745|consen  226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAIC  257 (564)
T ss_pred             cccEEEECCCCCchhHHHHHHHHHhCCCeEEe
Confidence            35799999999999999999999999776544

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=96.30  E-value=0.0046  Score=68.33  Aligned_cols=52  Identities=23%  Similarity=0.320  Sum_probs=42.4

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..|++++|.....+.+.+.+.....           ....+||+|+||||||++|++|.....
T Consensus       373 ~~~~~liG~S~~~~~~~~~~~~~a~-----------~~~pVLI~GE~GTGK~~lA~~ih~~s~  424 (686)
T PRK15429        373 SEFGEIIGRSEAMYSVLKQVEMVAQ-----------SDSTVLILGETGTGKELIARAIHNLSG  424 (686)
T ss_pred             ccccceeecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence            5789999999988888887774332           235799999999999999999987654

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=96.30  E-value=0.0032  Score=58.62  Aligned_cols=27  Identities=26%  Similarity=0.372  Sum_probs=24.1

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      +.-+++.|+||+|||++++.+|..++.
T Consensus         3 ~~~i~i~G~~G~GKst~a~~l~~~~~~   29 (197)
T PRK12339          3 STIHFIGGIPGVGKTSISGYIARHRAI   29 (197)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            346889999999999999999999983

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=96.30  E-value=0.0024  Score=60.37  Aligned_cols=27  Identities=33%  Similarity=0.544  Sum_probs=23.5

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHH
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      |++.+..+|+.||||||||+|+..++.
T Consensus        15 Gip~gs~~li~G~~GsGKT~l~~q~l~   41 (226)
T PF06745_consen   15 GIPKGSVVLISGPPGSGKTTLALQFLY   41 (226)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCcHHHHHHHHH
Confidence            677777899999999999999987664

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=96.30  E-value=0.0034  Score=62.31  Aligned_cols=26  Identities=27%  Similarity=0.560  Sum_probs=23.4

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++++|+.||+|+||||+++++++++.
T Consensus       132 ~~~ilI~G~tGSGKTTll~al~~~i~  157 (299)
T TIGR02782       132 RKNILVVGGTGSGKTTLANALLAEIA  157 (299)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            47899999999999999999998764

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.28  E-value=0.005  Score=61.58  Aligned_cols=26  Identities=27%  Similarity=0.353  Sum_probs=23.0

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.-++|.||||+||||++..+|..+.
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~~l~  139 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAHKYK  139 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            45688999999999999999998874

>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite

Probab=96.28  E-value=0.0014  Score=65.98  Aligned_cols=46  Identities=22%  Similarity=0.212  Sum_probs=29.3

Q ss_pred             EEEEEecCCcC-------------CCCccccCCCceeEEEEc-CCCCHHHHHHHHHHHhccc
Q 013823          310 RIIVFTTNHKE-------------RIDPALLRPGRMDVHINM-SYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       310 ~ivI~TTN~~~-------------~lD~AllRpGR~d~~I~~-~~p~~~~r~~i~~~~l~~~  357 (436)
                      .-|++++|...             .++++|+.  |||..+.+ ..|+.+.=..+.++.+...
T Consensus       165 ~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~  224 (331)
T PF00493_consen  165 CSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSH  224 (331)
T ss_dssp             -EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred             hhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEecc
Confidence            46888988665             47889999  99988765 6777776677777777654

; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=96.27  E-value=0.0038  Score=59.09  Aligned_cols=28  Identities=29%  Similarity=0.275  Sum_probs=24.1

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      |++....++++||||||||+++..++..
T Consensus        16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~   43 (229)
T TIGR03881        16 GIPRGFFVAVTGEPGTGKTIFCLHFAYK   43 (229)
T ss_pred             CCcCCeEEEEECCCCCChHHHHHHHHHH
Confidence            5677777999999999999999988754

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>TIGR00235 udk uridine kinase

Probab=96.26  E-value=0.0036  Score=58.44  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=21.5

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -+.+.||+|+|||||+++|++.++
T Consensus         8 vi~I~G~sGsGKSTl~~~l~~~l~   31 (207)
T TIGR00235         8 IIGIGGGSGSGKTTVARKIYEQLG   31 (207)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            366899999999999999999876

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PLN02674 adenylate kinase

Probab=96.25  E-value=0.0038  Score=60.01  Aligned_cols=27  Identities=26%  Similarity=0.612  Sum_probs=24.4

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      +..++|.||||+||+|.++.||..+++
T Consensus        31 ~~~i~l~G~PGsGKgT~a~~La~~~~~   57 (244)
T PLN02674         31 DKRLILIGPPGSGKGTQSPIIKDEYCL   57 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCC
Confidence            355899999999999999999999993

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=96.24  E-value=0.0029  Score=58.48  Aligned_cols=23  Identities=35%  Similarity=0.628  Sum_probs=21.5

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |.+.||||+||||+|+.|+..++
T Consensus         2 IgI~G~sgSGKTTla~~L~~~L~   24 (194)
T PF00485_consen    2 IGIAGPSGSGKTTLAKRLAQILN   24 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            56899999999999999999997

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK01184 hypothetical protein; Provisional

Probab=96.24  E-value=0.0033  Score=57.40  Aligned_cols=25  Identities=24%  Similarity=0.394  Sum_probs=21.3

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      -++|.||||+||||+++ ++.++|..
T Consensus         3 ~i~l~G~~GsGKsT~a~-~~~~~g~~   27 (184)
T PRK01184          3 IIGVVGMPGSGKGEFSK-IAREMGIP   27 (184)
T ss_pred             EEEEECCCCCCHHHHHH-HHHHcCCc
Confidence            47899999999999987 78888843

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.23  E-value=0.0056  Score=63.79  Aligned_cols=51  Identities=20%  Similarity=0.341  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          220 LKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       220 ~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.+.+.+.+...+.......... ..|.-++|+||||+|||+++..+|..+.
T Consensus        70 ~~~~v~~~L~~~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~  120 (437)
T PRK00771         70 VIKIVYEELVKLLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFK  120 (437)
T ss_pred             HHHHHHHHHHHHhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            34555555554443221111111 3467799999999999999999998775

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.23  E-value=0.0078  Score=58.89  Aligned_cols=27  Identities=37%  Similarity=0.447  Sum_probs=23.1

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .++-++|.||||+||||++..+|..+.
T Consensus        71 ~~~vi~l~G~~G~GKTTt~akLA~~l~   97 (272)
T TIGR00064        71 KPNVILFVGVNGVGKTTTIAKLANKLK   97 (272)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            356788899999999999999998774

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK04328 hypothetical protein; Provisional

Probab=96.21  E-value=0.0041  Score=59.97  Aligned_cols=28  Identities=36%  Similarity=0.386  Sum_probs=23.9

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      |++....+|++||||||||+|+..++.+
T Consensus        19 Gip~gs~ili~G~pGsGKT~l~~~fl~~   46 (249)
T PRK04328         19 GIPERNVVLLSGGPGTGKSIFSQQFLWN   46 (249)
T ss_pred             CCcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            5777778999999999999999877654

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=96.21  E-value=0.0048  Score=65.91  Aligned_cols=50  Identities=18%  Similarity=0.191  Sum_probs=40.9

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .+|++++|.....+.+.+.+..+-.           ....+||+|++||||+++|++|-+.
T Consensus       216 ~~f~~iiG~S~~m~~~~~~i~~~A~-----------s~~pVLI~GE~GTGKe~~A~~IH~~  265 (538)
T PRK15424        216 YVLGDLLGQSPQMEQVRQTILLYAR-----------SSAAVLIQGETGTGKELAAQAIHRE  265 (538)
T ss_pred             cchhheeeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCCCHHHHHHHHHHh
Confidence            4689999999888888777664332           2357999999999999999999876

>PRK00889 adenylylsulfate kinase; Provisional

Probab=96.21  E-value=0.0044  Score=56.13  Aligned_cols=26  Identities=27%  Similarity=0.391  Sum_probs=22.9

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.-+.|.|+||+|||++++++|..+.
T Consensus         4 g~~i~~~G~~GsGKST~a~~la~~l~   29 (175)
T PRK00889          4 GVTVWFTGLSGAGKTTIARALAEKLR   29 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34578999999999999999999884

>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species

Probab=96.21  E-value=0.0076  Score=61.00  Aligned_cols=30  Identities=37%  Similarity=0.706  Sum_probs=28.2

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |+|.+..+++||||.||||+++..+-+.++
T Consensus       258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~  287 (432)
T PF00519_consen  258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLK  287 (432)
T ss_dssp             TBTTSSEEEEESSCCCSHHHHHHHHHHHHT
T ss_pred             CCCcccEEEEECCCCCchhHHHHHHHHHhC
Confidence            678888999999999999999999999998

The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.

>TIGR02012 tigrfam_recA protein RecA

Probab=96.20  E-value=0.004  Score=62.17  Aligned_cols=29  Identities=28%  Similarity=0.384  Sum_probs=24.0

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++..+-+++|||||||||+|+..++...
T Consensus        51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~   79 (321)
T TIGR02012        51 GLPRGRIIEIYGPESSGKTTLALHAIAEA   79 (321)
T ss_pred             CCcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56767779999999999999988776554

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=96.20  E-value=0.0037  Score=57.08  Aligned_cols=27  Identities=33%  Similarity=0.587  Sum_probs=23.8

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      .-+.+.||+|+|||++++++++.++..
T Consensus         4 e~i~l~G~sGsGKSTl~~~la~~l~~~   30 (176)
T PRK09825          4 ESYILMGVSGSGKSLIGSKIAALFSAK   30 (176)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence            347899999999999999999998853

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=96.20  E-value=0.0051  Score=46.19  Aligned_cols=23  Identities=43%  Similarity=0.713  Sum_probs=20.4

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHh
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      ..+|+||.|+|||++..||.-.+
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            38999999999999999987655

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=96.20  E-value=0.0035  Score=56.81  Aligned_cols=22  Identities=36%  Similarity=0.794  Sum_probs=20.1

Q ss_pred             eeEeCCCCCChhHHHHHHHHHh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      ++|.|+||+||||+++.++.++
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            7899999999999999999998

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK14529 adenylate kinase; Provisional

Probab=96.17  E-value=0.0039  Score=59.17  Aligned_cols=26  Identities=27%  Similarity=0.517  Sum_probs=23.7

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      ++|.||||+||||+++.||..+++..
T Consensus         3 I~l~G~PGsGK~T~a~~La~~~~~~~   28 (223)
T PRK14529          3 ILIFGPNGSGKGTQGALVKKKYDLAH   28 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCC
Confidence            78999999999999999999999544

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.16  E-value=0.0037  Score=56.71  Aligned_cols=25  Identities=32%  Similarity=0.473  Sum_probs=22.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +-++|.||+|+|||++++.|++.+.
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCc
Confidence            3478999999999999999999765

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=96.16  E-value=0.006  Score=65.18  Aligned_cols=52  Identities=19%  Similarity=0.227  Sum_probs=39.1

Q ss_pred             CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      ..+|++++|.....+.+.+.+.....           ....+||+|++||||+++|+++-...
T Consensus       200 ~~~f~~~ig~s~~~~~~~~~~~~~A~-----------~~~pvlI~GE~GtGK~~lA~aiH~~s  251 (520)
T PRK10820        200 DSAFSQIVAVSPKMRQVVEQARKLAM-----------LDAPLLITGDTGTGKDLLAYACHLRS  251 (520)
T ss_pred             cccccceeECCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCccHHHHHHHHHHhC
Confidence            35789999988877777666653321           23569999999999999999985543

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=96.14  E-value=0.005  Score=58.67  Aligned_cols=28  Identities=32%  Similarity=0.223  Sum_probs=22.3

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      |++...-+++.||||||||+++..++..
T Consensus        20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~   47 (230)
T PRK08533         20 GIPAGSLILIEGDESTGKSILSQRLAYG   47 (230)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4666677999999999999997655543

>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]

Probab=96.12  E-value=0.0075  Score=63.29  Aligned_cols=56  Identities=25%  Similarity=0.312  Sum_probs=44.0

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ...+.+|++|+|......++++.+...-           +....+|++|.+||||..+|++|=+...
T Consensus       238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A-----------~tdstVLi~GESGTGKElfA~~IH~~S~  293 (560)
T COG3829         238 LKAKYTFDDIIGESPAMLRVLELAKRIA-----------KTDSTVLILGESGTGKELFARAIHNLSP  293 (560)
T ss_pred             cccccchhhhccCCHHHHHHHHHHHhhc-----------CCCCcEEEecCCCccHHHHHHHHHhcCc
Confidence            3455689999999888887777655322           3456799999999999999999987665

>PRK12338 hypothetical protein; Provisional

Probab=96.12  E-value=0.0042  Score=61.84  Aligned_cols=27  Identities=26%  Similarity=0.393  Sum_probs=24.5

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      |.-+++.|+||||||++|+++|..+|+
T Consensus         4 p~ii~i~G~sGsGKST~a~~la~~l~~   30 (319)
T PRK12338          4 PYVILIGSASGIGKSTIASELARTLNI   30 (319)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHCCC
Confidence            456889999999999999999999983

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=96.11  E-value=0.0068  Score=61.64  Aligned_cols=25  Identities=36%  Similarity=0.546  Sum_probs=22.3

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+++.||+|+||||+++++++++.
T Consensus       135 glilI~GpTGSGKTTtL~aLl~~i~  159 (358)
T TIGR02524       135 GIVFITGATGSGKSTLLAAIIRELA  159 (358)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4588999999999999999998874

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.11  E-value=0.0045  Score=65.54  Aligned_cols=27  Identities=30%  Similarity=0.404  Sum_probs=24.0

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHH
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      |++..+.+|+.||||||||+|+..++.
T Consensus        17 Glp~g~~~Li~G~pGsGKT~la~qfl~   43 (484)
T TIGR02655        17 GLPIGRSTLVSGTSGTGKTLFSIQFLY   43 (484)
T ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            678888899999999999999998753

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=96.10  E-value=0.0057  Score=65.27  Aligned_cols=53  Identities=19%  Similarity=0.211  Sum_probs=42.3

Q ss_pred             CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..+|++++|.....+.+.+.+..+-.           ....+||+|++||||+++|++|-+...
T Consensus       208 ~~~f~~iiG~S~~m~~~~~~i~~~A~-----------~~~pVLI~GE~GTGKe~lA~~IH~~S~  260 (526)
T TIGR02329       208 RYRLDDLLGASAPMEQVRALVRLYAR-----------SDATVLILGESGTGKELVAQAIHQLSG  260 (526)
T ss_pred             ccchhheeeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCcCHHHHHHHHHHhcC
Confidence            36799999999888888777764332           236799999999999999999987653

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=96.10  E-value=0.0047  Score=58.53  Aligned_cols=28  Identities=25%  Similarity=0.279  Sum_probs=23.8

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      |++...-+.|+||||||||+++..+|..
T Consensus        15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~   42 (235)
T cd01123          15 GIETGSITEIFGEFGSGKTQLCHQLAVT   42 (235)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5666666899999999999999999854

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.09  E-value=0.0044  Score=57.32  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=20.8

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.|.||+|+||||++++|++.++
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l~   24 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQLG   24 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            56899999999999999999873

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.08  E-value=0.0044  Score=57.61  Aligned_cols=24  Identities=46%  Similarity=0.803  Sum_probs=21.6

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -+++.||+|+||||++++++.++.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            378999999999999999998875

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK13975 thymidylate kinase; Provisional

Probab=96.07  E-value=0.0047  Score=56.83  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=23.3

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      .-+.|.||+|+||||+++.+|+.++.
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~~   28 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLNA   28 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            34789999999999999999999984

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=96.04  E-value=0.0053  Score=61.44  Aligned_cols=26  Identities=23%  Similarity=0.434  Sum_probs=23.3

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.++|+.||+|+||||++++++.++.
T Consensus       144 ~~nilI~G~tGSGKTTll~aL~~~i~  169 (323)
T PRK13833        144 RLNIVISGGTGSGKTTLANAVIAEIV  169 (323)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHh
Confidence            46899999999999999999998763

>PRK05973 replicative DNA helicase; Provisional

Probab=96.03  E-value=0.0057  Score=58.54  Aligned_cols=29  Identities=28%  Similarity=0.102  Sum_probs=24.3

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |+++..-+|+.|+||+|||+++..+|.+.
T Consensus        60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~   88 (237)
T PRK05973         60 QLKPGDLVLLGARPGHGKTLLGLELAVEA   88 (237)
T ss_pred             CCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56666779999999999999998887654

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.03  E-value=0.0055  Score=57.18  Aligned_cols=26  Identities=19%  Similarity=0.257  Sum_probs=22.9

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.-+.+.||+|||||||+++|+..++
T Consensus         6 ~~iI~I~G~sGsGKTTl~~~l~~~l~   31 (209)
T PRK05480          6 PIIIGIAGGSGSGKTTVASTIYEELG   31 (209)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34578999999999999999999983

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.03  E-value=0.0049  Score=57.65  Aligned_cols=25  Identities=28%  Similarity=0.437  Sum_probs=21.4

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHH
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .++-++|.||||+|||+++++++..
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            3456889999999999999999864

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.02  E-value=0.0081  Score=59.09  Aligned_cols=26  Identities=31%  Similarity=0.474  Sum_probs=22.5

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++.++|.||+|+||||++..+|..+.
T Consensus       194 ~~vi~~vGptGvGKTTt~~kLa~~~~  219 (282)
T TIGR03499       194 GGVIALVGPTGVGKTTTLAKLAARFV  219 (282)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34688999999999999999998763

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.02  E-value=0.0094  Score=62.23  Aligned_cols=51  Identities=27%  Similarity=0.412  Sum_probs=41.1

Q ss_pred             CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcce-eeEeCCCCCChhHHHHHHHHHhcch
Q 013823          208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg-~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      .-+|+++++.+...+.+...+.               .|.| +|+.||.|+|||+...++-++++..
T Consensus       234 ~l~l~~Lg~~~~~~~~~~~~~~---------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~  285 (500)
T COG2804         234 ILDLEKLGMSPFQLARLLRLLN---------------RPQGLILVTGPTGSGKTTTLYAALSELNTP  285 (500)
T ss_pred             cCCHHHhCCCHHHHHHHHHHHh---------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence            3478999999998888776554               3466 6678999999999999999998833

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=95.96  E-value=0.0061  Score=60.98  Aligned_cols=29  Identities=28%  Similarity=0.362  Sum_probs=24.0

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++..+-+++|||||||||+|+..+|.+.
T Consensus        51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~   79 (325)
T cd00983          51 GYPKGRIIEIYGPESSGKTTLALHAIAEA   79 (325)
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56666678999999999999999877544

RecA couples ATP hydrolysis to DNA strand exchange.

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=95.96  E-value=0.0064  Score=56.66  Aligned_cols=26  Identities=46%  Similarity=0.802  Sum_probs=23.6

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+.++|+||+|+|||+|++.+.+.+.
T Consensus        20 ~~~~~l~G~rg~GKTsLl~~~~~~~~   45 (234)
T PF01637_consen   20 SQHILLYGPRGSGKTSLLKEFINELK   45 (234)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred             CcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence            46799999999999999999999884

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=95.94  E-value=0.0066  Score=57.12  Aligned_cols=29  Identities=28%  Similarity=0.302  Sum_probs=24.8

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++...-+.|+||||||||+++..+|...
T Consensus        15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~   43 (226)
T cd01393          15 GIPTGRITEIFGEFGSGKTQLCLQLAVEA   43 (226)
T ss_pred             CCcCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence            56666779999999999999999998754

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>TIGR00376 DNA helicase, putative

Probab=95.91  E-value=0.011  Score=64.65  Aligned_cols=42  Identities=29%  Similarity=0.465  Sum_probs=29.0

Q ss_pred             cccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          214 LAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       214 i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      -.+++.+++.|...+.               ....+|++||||||||+++.++...+
T Consensus       156 ~~ln~~Q~~Av~~~l~---------------~~~~~lI~GpPGTGKT~t~~~ii~~~  197 (637)
T TIGR00376       156 PNLNESQKEAVSFALS---------------SKDLFLIHGPPGTGKTRTLVELIRQL  197 (637)
T ss_pred             CCCCHHHHHHHHHHhc---------------CCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence            3456777776644221               12358899999999999888877654

The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=95.90  E-value=0.006  Score=53.27  Aligned_cols=23  Identities=35%  Similarity=0.667  Sum_probs=20.8

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.|.||+|+|||++++.|+..+.
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCC
Confidence            57899999999999999999865

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=95.89  E-value=0.0069  Score=60.62  Aligned_cols=26  Identities=35%  Similarity=0.607  Sum_probs=23.1

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      .++.+++.||+|+|||+++++++.++
T Consensus       147 ~~~~ilI~G~tGSGKTTll~aL~~~~  172 (319)
T PRK13894        147 AHRNILVIGGTGSGKTTLVNAIINEM  172 (319)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            34789999999999999999999865

>PLN02459 probable adenylate kinase

Probab=95.88  E-value=0.0076  Score=58.38  Aligned_cols=26  Identities=27%  Similarity=0.634  Sum_probs=23.2

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      .++|.||||+|||++++.+|..+++.
T Consensus        31 ~ii~~G~PGsGK~T~a~~la~~~~~~   56 (261)
T PLN02459         31 NWVFLGCPGVGKGTYASRLSKLLGVP   56 (261)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            37889999999999999999999943

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.88  E-value=0.012  Score=60.17  Aligned_cols=50  Identities=26%  Similarity=0.456  Sum_probs=33.8

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          218 PELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       218 ~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .++++.+.+.+...+..+..+    ...++-++|.||+|+||||++..||..+.
T Consensus       217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~  266 (436)
T PRK11889        217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFH  266 (436)
T ss_pred             HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence            345666666655544432211    12346789999999999999999998764

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.85  E-value=0.012  Score=60.38  Aligned_cols=27  Identities=41%  Similarity=0.678  Sum_probs=23.4

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .++-++|+||+|+||||++.-+|..+.
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~  199 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYG  199 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            356789999999999999999998764

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=95.85  E-value=0.0052  Score=55.30  Aligned_cols=22  Identities=32%  Similarity=0.542  Sum_probs=19.9

Q ss_pred             eCCCCCChhHHHHHHHHHhcch
Q 013823          252 YGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       252 ~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      .||||||||++++++|+.++..
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~   22 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAA   22 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCe
Confidence            4999999999999999999843

>PF13479 AAA_24: AAA domain

Probab=95.84  E-value=0.0044  Score=58.30  Aligned_cols=20  Identities=50%  Similarity=1.042  Sum_probs=17.7

Q ss_pred             ceeeEeCCCCCChhHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAM  266 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~ai  266 (436)
                      --+|||||||+|||++|..+
T Consensus         4 ~~~lIyG~~G~GKTt~a~~~   23 (213)
T PF13479_consen    4 IKILIYGPPGSGKTTLAASL   23 (213)
T ss_pred             eEEEEECCCCCCHHHHHHhC
Confidence            35899999999999999876

>COG3378 Phage associated DNA primase [General function prediction only]

Probab=95.84  E-value=0.053  Score=57.49  Aligned_cols=53  Identities=34%  Similarity=0.631  Sum_probs=38.4

Q ss_pred             Cccccc-ChhHHHHHHHHHHHHHhhHHHHHHhC-CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          211 FDTLAM-DPELKQMILDDLDRFLRRKEFYRRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       211 ~~~i~g-~~~~k~~i~~~l~~~l~~~~~~~~~g-~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++++.+ ++++...+.+.+-..+        .| ..+...+.||||-|+|||+++..|.+.+|
T Consensus       201 L~~~~~~d~el~~ll~~i~g~~l--------~g~~~~~k~~~l~G~G~nGKstf~~li~~llG  255 (517)
T COG3378         201 LDRVAGGDPELRNLLQRIIGASL--------TGRVSEQKLFWLYGPGGNGKSTFVDLISNLLG  255 (517)
T ss_pred             HHHhhcCCHHHHHHHHHHHhhee--------cCcccceeEEEEEcCCCCChHHHHHHHHHHhc
Confidence            556655 6666665555443222        22 34667899999999999999999999999

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=95.83  E-value=0.006  Score=56.76  Aligned_cols=26  Identities=38%  Similarity=0.583  Sum_probs=23.4

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |+-++|.||+|+||||.+.-+|..+.
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~   26 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLK   26 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHh
Confidence            46689999999999999999998876

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=95.83  E-value=0.018  Score=59.98  Aligned_cols=28  Identities=36%  Similarity=0.417  Sum_probs=25.5

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      .|.-++++|+||||||+++..+|..+++
T Consensus       254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~  281 (475)
T PRK12337        254 RPLHVLIGGVSGVGKSVLASALAYRLGI  281 (475)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            4677999999999999999999999984

>PRK14974 cell division protein FtsY; Provisional

Probab=95.82  E-value=0.014  Score=58.78  Aligned_cols=26  Identities=38%  Similarity=0.543  Sum_probs=22.8

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++-++|.||||+||||++..+|..+.
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA~~l~  165 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLAYYLK  165 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            46689999999999999999998764

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=95.81  E-value=0.0061  Score=50.98  Aligned_cols=23  Identities=35%  Similarity=0.514  Sum_probs=20.3

Q ss_pred             CcceeeEeCCCCCChhHHHHHHH
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMA  267 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA  267 (436)
                      ....++|.||+|+|||+|++++.
T Consensus        14 ~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          14 GKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHhh
Confidence            34568999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=95.81  E-value=0.0072  Score=50.50  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=20.0

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      +++.|++|+|||+|++.+++....
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~~~   25 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGEFP   25 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS--
T ss_pred             EEEECcCCCCHHHHHHHHhcCCCc
Confidence            688999999999999999975543

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=95.80  E-value=0.0068  Score=54.66  Aligned_cols=26  Identities=35%  Similarity=0.549  Sum_probs=22.6

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +-.+++.||+|||||+|.+++|+...
T Consensus        29 Ge~iaitGPSG~GKStllk~va~Lis   54 (223)
T COG4619          29 GEFIAITGPSGCGKSTLLKIVASLIS   54 (223)
T ss_pred             CceEEEeCCCCccHHHHHHHHHhccC
Confidence            34589999999999999999998654

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=95.79  E-value=0.0073  Score=53.95  Aligned_cols=25  Identities=32%  Similarity=0.602  Sum_probs=22.8

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      --+.+.||||+|||+++.-+|+.+.
T Consensus         6 mki~ITG~PGvGKtTl~~ki~e~L~   30 (179)
T COG1618           6 MKIFITGRPGVGKTTLVLKIAEKLR   30 (179)
T ss_pred             eEEEEeCCCCccHHHHHHHHHHHHH
Confidence            4588999999999999999999886

>PLN02199 shikimate kinase

Probab=95.79  E-value=0.016  Score=57.03  Aligned_cols=31  Identities=29%  Similarity=0.393  Sum_probs=27.2

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcchhhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMKD  276 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~  276 (436)
                      .+.++|.|++|||||++++.+|+.+|..+.+
T Consensus       102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fID  132 (303)
T PLN02199        102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFD  132 (303)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence            4689999999999999999999999965543

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=95.77  E-value=0.0072  Score=55.29  Aligned_cols=23  Identities=30%  Similarity=0.592  Sum_probs=21.1

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.+.|+||||||++++.|+..++
T Consensus         2 i~i~G~sgsGKttla~~l~~~l~   24 (179)
T cd02028           2 VGIAGPSGSGKTTFAKKLSNQLR   24 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999974

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=95.76  E-value=0.012  Score=59.13  Aligned_cols=27  Identities=22%  Similarity=0.362  Sum_probs=24.1

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .++++|+.||+|+||||+++|+..++.
T Consensus       159 ~~~nili~G~tgSGKTTll~aL~~~ip  185 (332)
T PRK13900        159 SKKNIIISGGTSTGKTTFTNAALREIP  185 (332)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHhhCC
Confidence            347899999999999999999998775

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=95.75  E-value=0.0092  Score=56.32  Aligned_cols=28  Identities=21%  Similarity=0.224  Sum_probs=23.8

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      |++...-+++.||||+|||+++..+|.+
T Consensus        12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~   39 (224)
T TIGR03880        12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQ   39 (224)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5666777999999999999999888754

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=95.74  E-value=0.016  Score=57.28  Aligned_cols=29  Identities=24%  Similarity=0.306  Sum_probs=25.6

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      .|--+++.||+|||||++|..+|..++..
T Consensus        91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~  119 (301)
T PRK04220         91 EPIIILIGGASGVGTSTIAFELASRLGIR  119 (301)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            45568999999999999999999999844

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=95.73  E-value=0.0082  Score=59.72  Aligned_cols=29  Identities=21%  Similarity=0.296  Sum_probs=24.5

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++...-++++||||||||+++..+|...
T Consensus        91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~  119 (310)
T TIGR02236        91 GIETQAITEVFGEFGSGKTQICHQLAVNV  119 (310)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            56666678999999999999999988654

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=95.72  E-value=0.0042  Score=53.55  Aligned_cols=28  Identities=36%  Similarity=0.507  Sum_probs=23.5

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +...-+.+.||+|+|||+|+++|++...
T Consensus         9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen    9 KPGEIVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             cCCCEEEEEccCCCccccceeeeccccc
Confidence            3445688999999999999999988664

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=95.71  E-value=0.0055  Score=61.77  Aligned_cols=27  Identities=37%  Similarity=0.730  Sum_probs=22.4

Q ss_pred             Ccce--eeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRG--YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg--~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ...|  +.|-||+||||||+.++||+.-.
T Consensus        28 i~~Gef~~lLGPSGcGKTTlLR~IAGfe~   56 (352)
T COG3842          28 IKKGEFVTLLGPSGCGKTTLLRMIAGFEQ   56 (352)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3455  66999999999999999998654

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

Probab=95.71  E-value=0.0063  Score=66.17  Aligned_cols=24  Identities=42%  Similarity=0.580  Sum_probs=22.0

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+||.|-||||||.|.+.+++.+.
T Consensus       321 nILLvGDPgtaKSqlLk~v~~~aP  344 (682)
T COG1241         321 HILLVGDPGTAKSQLLKYVAKLAP  344 (682)
T ss_pred             eEEEcCCCchhHHHHHHHHHhhCC
Confidence            389999999999999999998776

>PRK06761 hypothetical protein; Provisional

Probab=95.69  E-value=0.008  Score=59.00  Aligned_cols=25  Identities=32%  Similarity=0.498  Sum_probs=23.0

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +-+++.||||+||||+++.++..+.
T Consensus         4 ~lIvI~G~~GsGKTTla~~L~~~L~   28 (282)
T PRK06761          4 KLIIIEGLPGFGKSTTAKMLNDILS   28 (282)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4588999999999999999999987

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.68  E-value=0.0092  Score=60.83  Aligned_cols=25  Identities=32%  Similarity=0.503  Sum_probs=22.1

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHh
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      +..++|.||+|+|||+++..||..+
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999999865

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=95.68  E-value=0.015  Score=59.43  Aligned_cols=25  Identities=32%  Similarity=0.389  Sum_probs=22.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..+|+.||+|+||||+++++..++.
T Consensus       150 GlilI~G~TGSGKTT~l~al~~~i~  174 (372)
T TIGR02525       150 GLGLICGETGSGKSTLAASIYQHCG  174 (372)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999998874

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=95.67  E-value=0.0098  Score=56.60  Aligned_cols=29  Identities=17%  Similarity=0.260  Sum_probs=25.0

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |+++..-++|.||||+|||+++..+|...
T Consensus         9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~   37 (242)
T cd00984           9 GLQPGDLIIIAARPSMGKTAFALNIAENI   37 (242)
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            67777779999999999999999887655

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=95.66  E-value=0.016  Score=61.42  Aligned_cols=49  Identities=31%  Similarity=0.468  Sum_probs=38.6

Q ss_pred             CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcce-eeEeCCCCCChhHHHHHHHHHhc
Q 013823          208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg-~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.+++++++.++..+.+...+.               .++| +|+.||+|+||||+..++.+++.
T Consensus       218 ~~~l~~Lg~~~~~~~~l~~~~~---------------~~~GlilitGptGSGKTTtL~a~L~~l~  267 (486)
T TIGR02533       218 RLDLETLGMSPELLSRFERLIR---------------RPHGIILVTGPTGSGKTTTLYAALSRLN  267 (486)
T ss_pred             CCCHHHcCCCHHHHHHHHHHHh---------------cCCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence            4588999988888877765433               2355 68999999999999998877775

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=95.65  E-value=0.0088  Score=53.09  Aligned_cols=24  Identities=38%  Similarity=0.594  Sum_probs=21.6

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHH
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .+|+||.||+|+|||+++.++...
T Consensus        14 g~gvLi~G~sG~GKStlal~L~~~   37 (149)
T cd01918          14 GIGVLITGPSGIGKSELALELIKR   37 (149)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            479999999999999999888775

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.64  E-value=0.021  Score=58.94  Aligned_cols=25  Identities=32%  Similarity=0.611  Sum_probs=21.8

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHh
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      ++-++|.||+|+||||++..+|..+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~  247 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKY  247 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4458899999999999999999765

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=95.63  E-value=0.0091  Score=53.88  Aligned_cols=23  Identities=43%  Similarity=0.634  Sum_probs=20.6

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +++.||||+|||+++..+|..+.
T Consensus         3 ~~~~G~~G~GKTt~~~~la~~~~   25 (173)
T cd03115           3 ILLVGLQGVGKTTTAAKLALYLK   25 (173)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999998764

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK10867 signal recognition particle protein; Provisional

Probab=95.63  E-value=0.014  Score=60.77  Aligned_cols=51  Identities=20%  Similarity=0.326  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHhhH-HHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          220 LKQMILDDLDRFLRRK-EFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       220 ~k~~i~~~l~~~l~~~-~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +++.+.+.+...+... ..+ ......|.-+++.||||+||||++.-+|..+.
T Consensus        74 ~~~~v~~el~~~l~~~~~~~-~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~  125 (433)
T PRK10867         74 VIKIVNDELVEILGGENSEL-NLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLK  125 (433)
T ss_pred             HHHHHHHHHHHHhCCCccee-eecCCCCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            4455555555444321 111 11223356789999999999998888887653

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=95.59  E-value=0.016  Score=61.88  Aligned_cols=51  Identities=16%  Similarity=0.168  Sum_probs=41.4

Q ss_pred             CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+++++|.....+.+.+.+...-           +....+||+|++||||+++|++|.....
T Consensus       185 ~~~~iig~s~~~~~~~~~i~~~a-----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~  235 (509)
T PRK05022        185 KEGEMIGQSPAMQQLKKEIEVVA-----------ASDLNVLILGETGVGKELVARAIHAASP  235 (509)
T ss_pred             cCCceeecCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence            57889999988888888776432           2346799999999999999999988654

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=95.59  E-value=0.0097  Score=54.92  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=20.9

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.+.|+||||||++|+.|+..++
T Consensus         2 i~i~G~sgsGKTtla~~l~~~~~   24 (187)
T cd02024           2 VGISGVTNSGKTTLAKLLQRILP   24 (187)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            56789999999999999999984

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK13808 adenylate kinase; Provisional

Probab=95.57  E-value=0.0094  Score=59.78  Aligned_cols=24  Identities=29%  Similarity=0.690  Sum_probs=22.8

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      ++|+||||+|||++++.||..+|+
T Consensus         3 Iiv~GpPGSGK~T~a~~LA~~ygl   26 (333)
T PRK13808          3 LILLGPPGAGKGTQAQRLVQQYGI   26 (333)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            789999999999999999999994

>PRK10536 hypothetical protein; Provisional

Probab=95.57  E-value=0.0095  Score=57.53  Aligned_cols=22  Identities=32%  Similarity=0.276  Sum_probs=20.2

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -+++.||+|||||+||.|+|.+
T Consensus        76 lV~i~G~aGTGKT~La~a~a~~   97 (262)
T PRK10536         76 LIFATGEAGCGKTWISAAKAAE   97 (262)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999984

>PTZ00301 uridine kinase; Provisional

Probab=95.57  E-value=0.0096  Score=55.99  Aligned_cols=22  Identities=36%  Similarity=0.496  Sum_probs=20.0

Q ss_pred             eeEeCCCCCChhHHHHHHHHHh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      +.+.||||+||||+|+.|+..+
T Consensus         6 IgIaG~SgSGKTTla~~l~~~l   27 (210)
T PTZ00301          6 IGISGASGSGKSSLSTNIVSEL   27 (210)
T ss_pred             EEEECCCcCCHHHHHHHHHHHH
Confidence            5689999999999999998876

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=95.55  E-value=0.029  Score=53.28  Aligned_cols=26  Identities=35%  Similarity=0.554  Sum_probs=22.9

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.-+.|.||+|+|||||++.|++.+.
T Consensus        33 ~~iigi~G~~GsGKTTl~~~L~~~l~   58 (229)
T PRK09270         33 RTIVGIAGPPGAGKSTLAEFLEALLQ   58 (229)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            44577899999999999999999876

>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]

Probab=95.55  E-value=0.16  Score=52.32  Aligned_cols=79  Identities=15%  Similarity=0.183  Sum_probs=48.6

Q ss_pred             CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCC-------------------CCcHHHHHhhhhcCCCCHHHH
Q 013823          321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKS-------------------HSLFGEIEGLIQSTDVTPAEV  381 (436)
Q Consensus       321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~-------------------~~~~~~i~~l~~~~~~tpaei  381 (436)
                      .|..||  |+|.-..|.++-++.+.-+......|......                   .....++...+..-+--.-|+
T Consensus       198 ~LskaL--Pn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDL  275 (431)
T PF10443_consen  198 PLSKAL--PNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDL  275 (431)
T ss_pred             hHHHhC--CCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHH
Confidence            455666  66888999999999998888777777653100                   123445555544433222233


Q ss_pred             HHHH---hccCCHHHHHHHHHHH
Q 013823          382 AEEL---MKADDADVALEGLVNF  401 (436)
Q Consensus       382 ~~~l---~~~~~~~~al~~l~~~  401 (436)
                      .-+.   ....+++.|++.+++.
T Consensus       276 e~lvrRiksGe~p~~Av~~iI~q  298 (431)
T PF10443_consen  276 EFLVRRIKSGESPEEAVEEIISQ  298 (431)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHH
Confidence            3222   2455888898888864

It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=95.55  E-value=0.0098  Score=54.52  Aligned_cols=25  Identities=32%  Similarity=0.644  Sum_probs=22.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      --+.+.||.|+|||||.+.||+.+.
T Consensus        29 e~~~i~G~NG~GKTtLLRilaGLl~   53 (209)
T COG4133          29 EALQITGPNGAGKTTLLRILAGLLR   53 (209)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcccC
Confidence            3477899999999999999998776

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=95.54  E-value=0.011  Score=50.77  Aligned_cols=31  Identities=26%  Similarity=0.382  Sum_probs=24.9

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      +...-++|+|+=|+|||++++++|..+|...
T Consensus        13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~   43 (123)
T PF02367_consen   13 KPGDVILLSGDLGAGKTTFVRGLARALGIDE   43 (123)
T ss_dssp             SS-EEEEEEESTTSSHHHHHHHHHHHTT--S
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCCC
Confidence            3445689999999999999999999998554

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=95.53  E-value=0.017  Score=56.62  Aligned_cols=47  Identities=34%  Similarity=0.674  Sum_probs=36.5

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcce-eeEeCCCCCChhHHHHHHHHHhc
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg-~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ....+|+.+..++-+++ +.                  ..++| +|+.||.|+||||...||-+++|
T Consensus       103 ~~i~~~e~LglP~i~~~-~~------------------~~~~GLILVTGpTGSGKSTTlAamId~iN  150 (353)
T COG2805         103 SKIPTLEELGLPPIVRE-LA------------------ESPRGLILVTGPTGSGKSTTLAAMIDYIN  150 (353)
T ss_pred             ccCCCHHHcCCCHHHHH-HH------------------hCCCceEEEeCCCCCcHHHHHHHHHHHHh
Confidence            34468999877776665 31                  23567 67789999999999999999998

>PRK07667 uridine kinase; Provisional

Probab=95.53  E-value=0.0098  Score=55.02  Aligned_cols=25  Identities=16%  Similarity=0.240  Sum_probs=22.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-|.+.|+||+|||++++.|+..++
T Consensus        18 ~iIgI~G~~gsGKStla~~L~~~l~   42 (193)
T PRK07667         18 FILGIDGLSRSGKTTFVANLKENMK   42 (193)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3467899999999999999999875

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=95.52  E-value=0.011  Score=49.60  Aligned_cols=25  Identities=32%  Similarity=0.316  Sum_probs=21.5

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++++++||+|+|||+++.+.+..+.
T Consensus         1 ~~~~i~~~~G~GKT~~~~~~~~~~~   25 (144)
T cd00046           1 RDVLLAAPTGSGKTLAALLPILELL   25 (144)
T ss_pred             CCEEEECCCCCchhHHHHHHHHHHH
Confidence            3689999999999999988887765

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=95.52  E-value=0.01  Score=60.62  Aligned_cols=23  Identities=35%  Similarity=0.647  Sum_probs=21.3

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .|++||||||||+|++.|++...
T Consensus       172 ~lIvgppGvGKTTLaK~Ian~I~  194 (416)
T PRK09376        172 GLIVAPPKAGKTVLLQNIANSIT  194 (416)
T ss_pred             EEEeCCCCCChhHHHHHHHHHHH
Confidence            88999999999999999998775

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=95.51  E-value=0.013  Score=51.98  Aligned_cols=34  Identities=26%  Similarity=0.437  Sum_probs=28.2

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR  277 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r  277 (436)
                      +.+-.+++-|+.||||||++++++.+++.++.+.
T Consensus        10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dg   43 (191)
T KOG3354|consen   10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDG   43 (191)
T ss_pred             CCceeEEEEecCCCChhhHHHHHHHHhCCccccc
Confidence            3444678899999999999999999999776544

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=95.51  E-value=0.01  Score=56.26  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=20.5

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +-+.||+|+||||+|+.|++.+.
T Consensus         2 igI~G~sGSGKTTla~~L~~~l~   24 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQALLS   24 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHh
Confidence            45789999999999999999884

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK09354 recA recombinase A; Provisional

Probab=95.49  E-value=0.012  Score=59.38  Aligned_cols=29  Identities=28%  Similarity=0.379  Sum_probs=23.5

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++..+-+++|||||||||+|+..++...
T Consensus        56 Gip~G~IteI~G~~GsGKTtLal~~~~~~   84 (349)
T PRK09354         56 GLPRGRIVEIYGPESSGKTTLALHAIAEA   84 (349)
T ss_pred             CCcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56666678999999999999998776443

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=95.48  E-value=0.011  Score=59.08  Aligned_cols=29  Identities=24%  Similarity=0.334  Sum_probs=24.6

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++.+.-++++||||||||+++..+|-..
T Consensus        98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~  126 (317)
T PRK04301         98 GIETQSITEFYGEFGSGKTQICHQLAVNV  126 (317)
T ss_pred             CccCCcEEEEECCCCCCHhHHHHHHHHHh
Confidence            56766778999999999999999988654

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=95.48  E-value=0.01  Score=54.52  Aligned_cols=25  Identities=20%  Similarity=0.280  Sum_probs=22.3

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      -|.|.|+||+||||+++.+++.++.
T Consensus         5 ~IvieG~~GsGKsT~~~~L~~~l~~   29 (195)
T TIGR00041         5 FIVIEGIDGAGKTTQANLLKKLLQE   29 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3678999999999999999999863

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=95.48  E-value=0.0086  Score=60.10  Aligned_cols=23  Identities=39%  Similarity=0.683  Sum_probs=20.9

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.|.||+||||||+.+.||+...
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe~   54 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLEE   54 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            78999999999999999998655

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=95.47  E-value=0.011  Score=53.93  Aligned_cols=23  Identities=35%  Similarity=0.566  Sum_probs=21.1

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.|.||+|+||||+++.|++.+.
T Consensus         3 I~ieG~~GsGKtT~~~~L~~~l~   25 (200)
T cd01672           3 IVFEGIDGAGKTTLIELLAERLE   25 (200)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            56889999999999999999984

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=95.47  E-value=0.018  Score=59.73  Aligned_cols=26  Identities=23%  Similarity=0.464  Sum_probs=23.0

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++-++|.||+|+||||++..+|..+.
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~  125 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQ  125 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45688999999999999999998774

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=95.46  E-value=0.011  Score=61.02  Aligned_cols=28  Identities=29%  Similarity=0.475  Sum_probs=25.0

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      .+-|.|.|++|||||||+++||..+|..
T Consensus       219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~  246 (399)
T PRK08099        219 VRTVAILGGESSGKSTLVNKLANIFNTT  246 (399)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence            4669999999999999999999998843

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.46  E-value=0.0091  Score=57.00  Aligned_cols=23  Identities=35%  Similarity=0.613  Sum_probs=21.3

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.+.||+|||||||.+.||+...
T Consensus        32 vsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            78999999999999999998765

>PRK08356 hypothetical protein; Provisional

Probab=95.46  E-value=0.011  Score=54.67  Aligned_cols=24  Identities=13%  Similarity=0.102  Sum_probs=20.7

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      -++|.||||+||||+|+.|+. .|.
T Consensus         7 ~i~~~G~~gsGK~t~a~~l~~-~g~   30 (195)
T PRK08356          7 IVGVVGKIAAGKTTVAKFFEE-KGF   30 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCC
Confidence            377899999999999999964 674

>PRK00023 cmk cytidylate kinase; Provisional

Probab=95.43  E-value=0.012  Score=55.81  Aligned_cols=29  Identities=24%  Similarity=0.381  Sum_probs=25.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVEMK  275 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~  275 (436)
                      .-+.+.||||||||++++.||+.+|+.+.
T Consensus         5 ~~i~i~g~~gsGksti~~~la~~~~~~~~   33 (225)
T PRK00023          5 IVIAIDGPAGSGKGTVAKILAKKLGFHYL   33 (225)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence            45788999999999999999999985544

>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]

Probab=95.42  E-value=0.025  Score=55.40  Aligned_cols=53  Identities=21%  Similarity=0.170  Sum_probs=40.8

Q ss_pred             ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .|.|+.-+++.|...+..++.++.      -..|--+-|||+|||||+..++.||+.+-
T Consensus        83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~  135 (344)
T KOG2170|consen   83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLY  135 (344)
T ss_pred             HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHH
Confidence            477888899999998887776541      11223345899999999999999999775

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=95.39  E-value=0.012  Score=53.35  Aligned_cols=24  Identities=25%  Similarity=0.259  Sum_probs=21.6

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -+|+.||||+|||++|..++..++
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~~   26 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQSG   26 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHcC
Confidence            378999999999999999998765

>PLN02165 adenylate isopentenyltransferase

Probab=95.39  E-value=0.014  Score=58.52  Aligned_cols=27  Identities=30%  Similarity=0.501  Sum_probs=24.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      .-++|.||+|+|||+|+..||..++.+
T Consensus        44 ~iivIiGPTGSGKStLA~~LA~~l~~e   70 (334)
T PLN02165         44 KVVVIMGATGSGKSRLSVDLATRFPSE   70 (334)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHcCCc
Confidence            458899999999999999999999843

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=95.37  E-value=0.031  Score=54.06  Aligned_cols=25  Identities=36%  Similarity=0.586  Sum_probs=22.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.+.||.|||||||.++|++.+.
T Consensus        29 ~i~~iiGpNG~GKSTLLk~l~g~l~   53 (258)
T COG1120          29 EITGILGPNGSGKSTLLKCLAGLLK   53 (258)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCC
Confidence            3477899999999999999999876

>PRK10436 hypothetical protein; Provisional

Probab=95.36  E-value=0.024  Score=59.55  Aligned_cols=49  Identities=27%  Similarity=0.437  Sum_probs=37.9

Q ss_pred             CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcce-eeEeCCCCCChhHHHHHHHHHhc
Q 013823          208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg-~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.+|+++++.+...+.+.+.+.               .+.| +|+.||.|+||||+..++-.+++
T Consensus       194 ~~~L~~LG~~~~~~~~l~~~~~---------------~~~GliLvtGpTGSGKTTtL~a~l~~~~  243 (462)
T PRK10436        194 ALDLETLGMTPAQLAQFRQALQ---------------QPQGLILVTGPTGSGKTVTLYSALQTLN  243 (462)
T ss_pred             CCCHHHcCcCHHHHHHHHHHHH---------------hcCCeEEEECCCCCChHHHHHHHHHhhC
Confidence            3588999998888777765443               2344 78899999999999988877775

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=95.36  E-value=0.0097  Score=49.83  Aligned_cols=20  Identities=40%  Similarity=0.682  Sum_probs=18.6

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|+||+|||||++++.+
T Consensus         2 V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            68999999999999999985

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=95.34  E-value=0.012  Score=55.09  Aligned_cols=28  Identities=39%  Similarity=0.629  Sum_probs=22.2

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVEMK  275 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~~~  275 (436)
                      -+++.||+|||||.++-++|+.+|.++.
T Consensus         3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI   30 (233)
T PF01745_consen    3 VYLIVGPTGTGKTALAIALAQKTGAPVI   30 (233)
T ss_dssp             EEEEE-STTSSHHHHHHHHHHHH--EEE
T ss_pred             EEEEECCCCCChhHHHHHHHHHhCCCEE
Confidence            3789999999999999999999995543

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=95.34  E-value=0.011  Score=55.40  Aligned_cols=27  Identities=26%  Similarity=0.389  Sum_probs=22.8

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ...-+.|.||+|+|||||+++|++.+.
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~   55 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence            334588999999999999999998764

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=95.33  E-value=0.013  Score=59.24  Aligned_cols=29  Identities=17%  Similarity=0.133  Sum_probs=23.6

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++...-..|+||||||||.|+..+|-..
T Consensus       122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~  150 (344)
T PLN03187        122 GIETRCITEAFGEFRSGKTQLAHTLCVTT  150 (344)
T ss_pred             CCCCCeEEEEecCCCCChhHHHHHHHHHH
Confidence            56666668899999999999999887543

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=95.32  E-value=0.014  Score=54.06  Aligned_cols=27  Identities=26%  Similarity=0.418  Sum_probs=22.6

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      ..|.-+++.||||+|||+++..+...+
T Consensus        13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~   39 (199)
T PF06414_consen   13 EKPTLIIIAGQPGSGKSTLARQLLEEF   39 (199)
T ss_dssp             SS-EEEEEES-TTSTTHHHHHHHHHHT
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHhhhhc
Confidence            456789999999999999999999987

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK11823 DNA repair protein RadA; Provisional

Probab=95.32  E-value=0.014  Score=61.10  Aligned_cols=29  Identities=38%  Similarity=0.472  Sum_probs=25.0

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++...-+||+||||+|||+|+..+|...
T Consensus        76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~  104 (446)
T PRK11823         76 GLVPGSVVLIGGDPGIGKSTLLLQVAARL  104 (446)
T ss_pred             CccCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            56666779999999999999999998765

>PRK12608 transcription termination factor Rho; Provisional

Probab=95.31  E-value=0.013  Score=59.47  Aligned_cols=23  Identities=30%  Similarity=0.566  Sum_probs=21.2

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .|+.||||||||+|++.+|+.+.
T Consensus       136 ~LIvG~pGtGKTTLl~~la~~i~  158 (380)
T PRK12608        136 GLIVAPPRAGKTVLLQQIAAAVA  158 (380)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            79999999999999999998774

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB

Probab=95.31  E-value=0.024  Score=61.16  Aligned_cols=48  Identities=29%  Similarity=0.572  Sum_probs=38.2

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcce-eeEeCCCCCChhHHHHHHHHHhc
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg-~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+++++++.++..+.+.+.+.               .++| +|+.||+|+||||+..++.++++
T Consensus       293 ~~l~~lg~~~~~~~~l~~~~~---------------~~~Glilv~G~tGSGKTTtl~a~l~~~~  341 (564)
T TIGR02538       293 LDIDKLGFEPDQKALFLEAIH---------------KPQGMVLVTGPTGSGKTVSLYTALNILN  341 (564)
T ss_pred             CCHHHcCCCHHHHHHHHHHHH---------------hcCCeEEEECCCCCCHHHHHHHHHHhhC
Confidence            578999999888887766443               2345 68999999999999988888876

This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.

>PTZ00202 tuzin; Provisional

Probab=95.30  E-value=0.033  Score=57.69  Aligned_cols=54  Identities=22%  Similarity=0.243  Sum_probs=40.6

Q ss_pred             CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |....+.+|-+....++...+.          ......++-+.|.||+|||||++++.++..++
T Consensus       258 Pa~~~~FVGReaEla~Lr~VL~----------~~d~~~privvLtG~~G~GKTTLlR~~~~~l~  311 (550)
T PTZ00202        258 PAVIRQFVSREAEESWVRQVLR----------RLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG  311 (550)
T ss_pred             CCCccCCCCcHHHHHHHHHHHh----------ccCCCCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4556778888888777766543          12233446678999999999999999998887

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=95.29  E-value=0.013  Score=58.51  Aligned_cols=28  Identities=18%  Similarity=0.131  Sum_probs=23.4

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      |++..+-++++||||||||.|+..+|-.
T Consensus        92 Gi~~G~iteI~G~~GsGKTql~lqla~~  119 (313)
T TIGR02238        92 GIESMSITEVFGEFRCGKTQLSHTLCVT  119 (313)
T ss_pred             CCcCCeEEEEECCCCCCcCHHHHHHHHH
Confidence            5666677899999999999999887753

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=95.29  E-value=0.019  Score=57.11  Aligned_cols=29  Identities=17%  Similarity=0.494  Sum_probs=24.8

Q ss_pred             CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          243 KAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       243 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +..+..+++.||+|+||||+++++++++.
T Consensus       141 v~~~~~ili~G~tGsGKTTll~al~~~~~  169 (308)
T TIGR02788       141 IASRKNIIISGGTGSGKTTFLKSLVDEIP  169 (308)
T ss_pred             hhCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence            34557899999999999999999998764

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>TIGR00017 cmk cytidylate kinase

Probab=95.28  E-value=0.014  Score=55.15  Aligned_cols=27  Identities=33%  Similarity=0.468  Sum_probs=23.5

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      -+.+.||+||||||+++.||..++...
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~~~~~~   30 (217)
T TIGR00017         4 IIAIDGPSGAGKSTVAKAVAEKLGYAY   30 (217)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCce
Confidence            467899999999999999999998443

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=95.27  E-value=0.012  Score=59.41  Aligned_cols=27  Identities=26%  Similarity=0.532  Sum_probs=24.2

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+..+|+.||+|+||||+++++++++.
T Consensus       161 ~~~nilI~G~tGSGKTTll~aLl~~i~  187 (344)
T PRK13851        161 GRLTMLLCGPTGSGKTTMSKTLISAIP  187 (344)
T ss_pred             cCCeEEEECCCCccHHHHHHHHHcccC
Confidence            457899999999999999999998775

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=95.27  E-value=0.015  Score=59.52  Aligned_cols=30  Identities=37%  Similarity=0.473  Sum_probs=25.1

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |+.+..-+||+||||+|||+|+..+|..+.
T Consensus        78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a  107 (372)
T cd01121          78 GLVPGSVILIGGDPGIGKSTLLLQVAARLA  107 (372)
T ss_pred             CccCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            466666799999999999999999987653

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=95.27  E-value=0.016  Score=53.71  Aligned_cols=26  Identities=27%  Similarity=0.325  Sum_probs=22.7

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      .+.-+.|.|+||+|||+++++|+..+
T Consensus        23 ~~~~i~i~G~~GsGKSTla~~l~~~l   48 (198)
T PRK03846         23 KGVVLWFTGLSGSGKSTVAGALEEAL   48 (198)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34567899999999999999999987

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=95.26  E-value=0.017  Score=52.68  Aligned_cols=27  Identities=30%  Similarity=0.357  Sum_probs=23.3

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+.-+.+.|+||+|||+++++++..+.
T Consensus        17 ~~~~i~i~G~~GsGKstla~~l~~~l~   43 (184)
T TIGR00455        17 RGVVIWLTGLSGSGKSTIANALEKKLE   43 (184)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            345578999999999999999999874

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=95.26  E-value=0.016  Score=56.04  Aligned_cols=26  Identities=31%  Similarity=0.603  Sum_probs=23.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      .-+++.||||||||+|++.+++.+..
T Consensus        17 qr~~I~G~~G~GKTTLlr~I~n~l~~   42 (249)
T cd01128          17 QRGLIVAPPKAGKTTLLQSIANAITK   42 (249)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccc
Confidence            44899999999999999999998764

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=95.26  E-value=0.014  Score=53.28  Aligned_cols=25  Identities=28%  Similarity=0.432  Sum_probs=21.8

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      +.|+|+||+|||++++.+++ +|...
T Consensus         2 i~itG~~gsGKst~~~~l~~-~g~~~   26 (179)
T cd02022           2 IGLTGGIGSGKSTVAKLLKE-LGIPV   26 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHH-CCCCE
Confidence            67999999999999999998 77433

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=95.25  E-value=0.011  Score=63.28  Aligned_cols=29  Identities=31%  Similarity=0.426  Sum_probs=24.3

Q ss_pred             CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          243 KAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       243 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++++..+|+.||+|||||+|.+|||+...
T Consensus       416 v~~G~~llI~G~SG~GKTsLlRaiaGLWP  444 (604)
T COG4178         416 VRPGERLLITGESGAGKTSLLRALAGLWP  444 (604)
T ss_pred             eCCCCEEEEECCCCCCHHHHHHHHhccCc
Confidence            34555699999999999999999998654

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=95.24  E-value=0.019  Score=55.79  Aligned_cols=44  Identities=23%  Similarity=0.182  Sum_probs=27.4

Q ss_pred             EEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          310 RIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       310 ~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      .-||+||....-.. .+   +.-+..++++..+.++-..++..+....
T Consensus       130 ~kilvTTR~~~v~~-~~---~~~~~~~~l~~L~~~ea~~L~~~~~~~~  173 (287)
T PF00931_consen  130 SKILVTTRDRSVAG-SL---GGTDKVIELEPLSEEEALELFKKRAGRK  173 (287)
T ss_dssp             -EEEEEESCGGGGT-TH---HSCEEEEECSS--HHHHHHHHHHHHTSH
T ss_pred             cccccccccccccc-cc---cccccccccccccccccccccccccccc
Confidence            45677776543221 11   1226789999999999999999887654

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=95.24  E-value=0.016  Score=51.81  Aligned_cols=25  Identities=32%  Similarity=0.365  Sum_probs=22.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.|.||+|||++|+++...|.
T Consensus         3 ~vIwltGlsGsGKtTlA~~L~~~L~   27 (156)
T PF01583_consen    3 FVIWLTGLSGSGKTTLARALERRLF   27 (156)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3478999999999999999999886

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK04132 replication factor C small subunit; Provisional

Probab=95.23  E-value=0.016  Score=64.91  Aligned_cols=45  Identities=22%  Similarity=0.371  Sum_probs=35.0

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHH
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSL  262 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~l  262 (436)
                      .-.|.+|+||+|++.+++.|...+..           |  ....+||+||||+||+..
T Consensus        12 k~RP~~f~dIiGqe~i~~~Lk~~i~~-----------~--~i~h~l~~g~~g~~~cl~   56 (846)
T PRK04132         12 KYRPQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKCLT   56 (846)
T ss_pred             hhCCCCHHHhcCcHHHHHHHHHHHHc-----------C--CCCeEEEECCCCCCcccc
Confidence            56789999999999999988776651           1  112378999999999753

>PRK05439 pantothenate kinase; Provisional

Probab=95.22  E-value=0.023  Score=56.61  Aligned_cols=25  Identities=24%  Similarity=0.157  Sum_probs=21.7

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-|.+.||||+||||+|+.|+..++
T Consensus        87 ~iIgIaG~~gsGKSTla~~L~~~l~  111 (311)
T PRK05439         87 FIIGIAGSVAVGKSTTARLLQALLS  111 (311)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3477899999999999999998765

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.20  E-value=0.026  Score=58.76  Aligned_cols=26  Identities=31%  Similarity=0.470  Sum_probs=22.0

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++.++|.||+|+||||++..||..+.
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~  246 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYA  246 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45688999999999999999987653

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=95.17  E-value=0.016  Score=58.18  Aligned_cols=28  Identities=25%  Similarity=0.413  Sum_probs=24.9

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      +.++|.|+||||||+|++++++.++...
T Consensus       163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~  190 (325)
T TIGR01526       163 KTVAILGGESTGKSTLVNKLAAVFNTTS  190 (325)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence            5789999999999999999999988443

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=95.14  E-value=0.016  Score=51.10  Aligned_cols=21  Identities=38%  Similarity=0.765  Sum_probs=19.0

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      -++|.||.|||||||+++|-+
T Consensus         3 rimliG~~g~GKTTL~q~L~~   23 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNG   23 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcC
Confidence            478999999999999999865

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR02688 conserved hypothetical protein TIGR02688

Probab=95.13  E-value=0.034  Score=57.35  Aligned_cols=24  Identities=33%  Similarity=0.618  Sum_probs=21.6

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHH
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      ..++++.||||||||.++.+++.+
T Consensus       209 ~~Nli~lGp~GTGKThla~~l~~~  232 (449)
T TIGR02688       209 NYNLIELGPKGTGKSYIYNNLSPY  232 (449)
T ss_pred             CCcEEEECCCCCCHHHHHHHHhHH
Confidence            367999999999999999998877

Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=95.13  E-value=0.018  Score=58.20  Aligned_cols=25  Identities=40%  Similarity=0.745  Sum_probs=22.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..+|+.||+|+||||+.+++.+++.
T Consensus       123 g~ili~G~tGSGKTT~l~al~~~i~  147 (343)
T TIGR01420       123 GLILVTGPTGSGKSTTLASMIDYIN  147 (343)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhC
Confidence            4578999999999999999998765

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=95.11  E-value=0.017  Score=53.00  Aligned_cols=26  Identities=35%  Similarity=0.503  Sum_probs=22.6

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      +.+.|++||||||+++.++++++...
T Consensus         2 I~ieG~~GsGKSTl~~~L~~~~~~~~   27 (193)
T cd01673           2 IVVEGNIGAGKSTLAKELAEHLGYEV   27 (193)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcc
Confidence            56899999999999999999877543

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>TIGR00959 ffh signal recognition particle protein

Probab=95.08  E-value=0.027  Score=58.53  Aligned_cols=26  Identities=31%  Similarity=0.439  Sum_probs=22.6

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      .|.-+++.||||+||||++..+|..+
T Consensus        98 ~p~vi~~vG~~GsGKTTtaakLA~~l  123 (428)
T TIGR00959        98 PPTVILMVGLQGSGKTTTCGKLAYYL  123 (428)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            35678999999999999999998875

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=95.07  E-value=0.015  Score=55.10  Aligned_cols=27  Identities=22%  Similarity=0.359  Sum_probs=23.1

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ...-+.|.||+|+|||||+++|++.+.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMGLLP   51 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            344589999999999999999998764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=95.07  E-value=0.016  Score=52.64  Aligned_cols=27  Identities=30%  Similarity=0.437  Sum_probs=23.0

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      ..+.-+.|.||+|+|||+|+++|++..
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          26 KQGEKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            344558899999999999999999865

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=95.07  E-value=0.014  Score=54.35  Aligned_cols=28  Identities=25%  Similarity=0.411  Sum_probs=23.4

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+..-+.|.||+|+|||+|.++||+.+.
T Consensus        24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03262          24 KKGEVVVIIGPSGSGKSTLLRCINLLEE   51 (213)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3445588999999999999999998653

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=95.06  E-value=0.015  Score=54.22  Aligned_cols=27  Identities=30%  Similarity=0.351  Sum_probs=22.7

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+.-+.|.||+|+|||||+++||+.+.
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   52 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEEL   52 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            334588999999999999999998653

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=95.06  E-value=0.017  Score=52.23  Aligned_cols=28  Identities=25%  Similarity=0.430  Sum_probs=23.6

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ....-+.|.||+|+|||+|.++|++.+.
T Consensus        26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~   53 (171)
T cd03228          26 KPGEKVAIVGPSGSGKSTLLKLLLRLYD   53 (171)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            3445588999999999999999998764

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=95.06  E-value=0.021  Score=52.12  Aligned_cols=26  Identities=35%  Similarity=0.649  Sum_probs=23.7

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +|-++|.||+|+|||+|++.|.....
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~   27 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFP   27 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence            47799999999999999999999875

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>smart00072 GuKc Guanylate kinase homologues

Probab=95.06  E-value=0.018  Score=52.77  Aligned_cols=25  Identities=36%  Similarity=0.719  Sum_probs=22.6

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHh
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      ++-++|.||+|+||+++++.++...
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~   26 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEI   26 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcC
Confidence            3568999999999999999999886

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=95.06  E-value=0.019  Score=60.81  Aligned_cols=29  Identities=28%  Similarity=0.292  Sum_probs=24.8

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++....+|+.||||||||+|+..++...
T Consensus       259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~  287 (484)
T TIGR02655       259 GFFKDSIILATGATGTGKTLLVSKFLENA  287 (484)
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            56777779999999999999998888754

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=95.06  E-value=0.015  Score=53.92  Aligned_cols=26  Identities=27%  Similarity=0.487  Sum_probs=22.3

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..-+.|.||+|+|||||+++||+.+.
T Consensus        24 Ge~~~i~G~nGsGKSTLl~~l~G~~~   49 (206)
T TIGR03608        24 GKMYAIIGESGSGKSTLLNIIGLLEK   49 (206)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34588999999999999999998653

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=95.04  E-value=0.016  Score=54.09  Aligned_cols=25  Identities=28%  Similarity=0.507  Sum_probs=21.8

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHh
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      +.-+.|.||.|+|||||+++||+.+
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          26 GEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3447899999999999999999865

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=95.04  E-value=0.018  Score=53.44  Aligned_cols=25  Identities=24%  Similarity=0.193  Sum_probs=22.4

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      -+.++||||+|||++++.+++.+|.
T Consensus         3 ~i~itG~~gsGKst~~~~l~~~~g~   27 (195)
T PRK14730          3 RIGLTGGIASGKSTVGNYLAQQKGI   27 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCC
Confidence            3779999999999999999998774

>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []

Probab=95.04  E-value=0.038  Score=55.55  Aligned_cols=30  Identities=33%  Similarity=0.499  Sum_probs=25.0

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++|.+|.+||-||--|||||+|.|+-+.+|
T Consensus       151 N~PKkRy~lFkGPvNsGKTTlAAAlLdL~g  180 (417)
T PF06431_consen  151 NIPKKRYWLFKGPVNSGKTTLAAALLDLCG  180 (417)
T ss_dssp             TBTTB-EEEEE-STTSSHHHHHHHHHHHH-
T ss_pred             CCCcceeEEEecCcCCchHHHHHHHHHhcC
Confidence            468889999999999999999999999887

Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=95.04  E-value=0.016  Score=54.99  Aligned_cols=28  Identities=25%  Similarity=0.343  Sum_probs=23.6

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ....-+.|.||+|+|||||+++||+.+.
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   56 (233)
T cd03258          29 PKGEIFGIIGRSGAGKSTLIRCINGLER   56 (233)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3445688999999999999999998764

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=95.02  E-value=0.016  Score=55.25  Aligned_cols=27  Identities=26%  Similarity=0.438  Sum_probs=22.7

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+.-+.|.||+|+|||||+++|++.+.
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   53 (243)
T TIGR02315        27 PGEFVAIIGPSGAGKSTLLRCINRLVE   53 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            344588999999999999999998653

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=94.99  E-value=0.02  Score=61.08  Aligned_cols=27  Identities=30%  Similarity=0.354  Sum_probs=23.4

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHH
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      |++..+-+|++|+||||||+|+..++.
T Consensus        27 G~p~Gs~~li~G~pGsGKT~l~~qf~~   53 (509)
T PRK09302         27 GLPKGRPTLVSGTAGTGKTLFALQFLV   53 (509)
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            577778899999999999999987764

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3

Probab=94.99  E-value=0.045  Score=48.91  Aligned_cols=27  Identities=33%  Similarity=0.452  Sum_probs=22.9

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..+.+||.+|+|+|||.++-.++.++.
T Consensus        24 ~~~~~ll~~~tGsGKT~~~~~~~~~l~   50 (184)
T PF04851_consen   24 EERRVLLNAPTGSGKTIIALALILELA   50 (184)
T ss_dssp             GCSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcChhhhhhhhccc
Confidence            357899999999999999998776665

1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....

>cd04159 Arl10_like Arl10-like subfamily

Probab=94.99  E-value=0.015  Score=50.28  Aligned_cols=21  Identities=29%  Similarity=0.444  Sum_probs=18.8

Q ss_pred             eeEeCCCCCChhHHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~  269 (436)
                      +.|.||+|+|||+|.+++.+.
T Consensus         2 i~i~G~~~~GKssl~~~l~~~   22 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG   22 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC
Confidence            678999999999999999764

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=94.97  E-value=0.017  Score=54.50  Aligned_cols=22  Identities=36%  Similarity=0.596  Sum_probs=19.8

Q ss_pred             eeEeCCCCCChhHHHHHHHHHh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      ++++|+||+|||++++.++...
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~~   22 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKDR   22 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHhc
Confidence            4689999999999999999983

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>PLN02796 D-glycerate 3-kinase

Probab=94.97  E-value=0.055  Score=54.48  Aligned_cols=23  Identities=26%  Similarity=0.496  Sum_probs=21.1

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +-+.||+||||||++++|+..+.
T Consensus       103 IGI~G~sGSGKSTLa~~L~~lL~  125 (347)
T PLN02796        103 IGISAPQGCGKTTLVFALVYLFN  125 (347)
T ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Confidence            66889999999999999999885

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=94.97  E-value=0.02  Score=61.51  Aligned_cols=30  Identities=20%  Similarity=0.350  Sum_probs=25.8

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcchhhcc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVEMKDR  277 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~~~~r  277 (436)
                      -+.|.|+||||||++++.+|+.++.++.+.
T Consensus         8 ~i~LiG~~GaGKttvg~~LA~~L~~~fiD~   37 (542)
T PRK14021          8 QAVIIGMMGAGKTRVGKEVAQMMRLPFADA   37 (542)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence            388999999999999999999999655443

>PRK13695 putative NTPase; Provisional

Probab=94.96  E-value=0.02  Score=51.79  Aligned_cols=22  Identities=41%  Similarity=0.792  Sum_probs=20.2

Q ss_pred             eeEeCCCCCChhHHHHHHHHHh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      ++|.|+||+|||++++.+++.+
T Consensus         3 i~ltG~~G~GKTTll~~i~~~l   24 (174)
T PRK13695          3 IGITGPPGVGKTTLVLKIAELL   24 (174)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999998875

>PTZ00035 Rad51 protein; Provisional

Probab=94.93  E-value=0.02  Score=57.76  Aligned_cols=29  Identities=24%  Similarity=0.178  Sum_probs=24.0

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++...-+.++||||||||+++..+|...
T Consensus       114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~  142 (337)
T PTZ00035        114 GIETGSITELFGEFRTGKTQLCHTLCVTC  142 (337)
T ss_pred             CCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence            56666668899999999999999887654

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=94.93  E-value=0.018  Score=60.89  Aligned_cols=29  Identities=28%  Similarity=0.517  Sum_probs=24.8

Q ss_pred             CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          243 KAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       243 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++.+..+|++||.|||||+|.+.+|+...
T Consensus       458 V~~g~~LLItG~sG~GKtSLlRvlggLWp  486 (659)
T KOG0060|consen  458 VPSGQNLLITGPSGCGKTSLLRVLGGLWP  486 (659)
T ss_pred             ecCCCeEEEECCCCCchhHHHHHHhcccc
Confidence            45567899999999999999999987653

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=94.93  E-value=0.018  Score=54.35  Aligned_cols=26  Identities=35%  Similarity=0.524  Sum_probs=22.4

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      .+.-+.|.||+|+|||||+++|++..
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (225)
T PRK10247         32 AGEFKLITGPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            34458899999999999999999865

>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]

Probab=94.93  E-value=0.51  Score=51.25  Aligned_cols=108  Identities=19%  Similarity=0.246  Sum_probs=61.6

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcchhhcccC---------------------------CCC---------------CCC
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN---------------------------DGA---------------SVG  285 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~---------------------------~~~---------------~~~  285 (436)
                      .+.+.|-||||||.+++.+-++|.........                           ...               ...
T Consensus       424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~  503 (767)
T KOG1514|consen  424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP  503 (767)
T ss_pred             eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence            46788999999999999999877611000000                           000               001


Q ss_pred             CCcceeecceeecccCcccC--------------CCCeEEEEEecCCcCCCCccccC--C-Ccee-EEEEcCCCCHHHHH
Q 013823          286 SNTKLTLSGILNFIDGLWSS--------------CGDERIIVFTTNHKERIDPALLR--P-GRMD-VHINMSYCTVHGFK  347 (436)
Q Consensus       286 ~~~~~~~s~LL~~ldg~~~~--------------~~~~~ivI~TTN~~~~lD~AllR--p-GR~d-~~I~~~~p~~~~r~  347 (436)
                      ...+.+.--|++++|-++..              .+...+||+..|.-+ |+.-++-  + .|++ ..|.|...+.++..
T Consensus       504 k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmd-lPEr~l~nrvsSRlg~tRi~F~pYth~qLq  582 (767)
T KOG1514|consen  504 KPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMD-LPERLLMNRVSSRLGLTRICFQPYTHEQLQ  582 (767)
T ss_pred             CCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccccc-CHHHHhccchhhhccceeeecCCCCHHHHH
Confidence            12222333456666655331              223456666677644 3333321  1 2554 56788888999999


Q ss_pred             HHHHHHhcc
Q 013823          348 VLASNYLGI  356 (436)
Q Consensus       348 ~i~~~~l~~  356 (436)
                      +|+..-|..
T Consensus       583 ~Ii~~RL~~  591 (767)
T KOG1514|consen  583 EIISARLKG  591 (767)
T ss_pred             HHHHHhhcc
Confidence            888877754

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.92  E-value=0.019  Score=53.14  Aligned_cols=29  Identities=28%  Similarity=0.540  Sum_probs=24.2

Q ss_pred             CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          243 KAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       243 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +...--+.+.||+|||||||.+.+|+...
T Consensus        28 ia~ge~vv~lGpSGcGKTTLLnl~AGf~~   56 (259)
T COG4525          28 IASGELVVVLGPSGCGKTTLLNLIAGFVT   56 (259)
T ss_pred             ecCCCEEEEEcCCCccHHHHHHHHhcCcC
Confidence            34445588899999999999999998776

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=94.91  E-value=0.016  Score=54.06  Aligned_cols=26  Identities=31%  Similarity=0.479  Sum_probs=22.3

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      ...-+.|.||+|+|||||+++|++.+
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33458899999999999999999865

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.90  E-value=0.019  Score=53.03  Aligned_cols=27  Identities=30%  Similarity=0.349  Sum_probs=23.1

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +..-+.|.||+|+|||+|+++||+.+.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGIMQ   51 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            345588999999999999999998764

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=94.90  E-value=0.028  Score=57.68  Aligned_cols=50  Identities=20%  Similarity=0.281  Sum_probs=40.0

Q ss_pred             CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHH
Q 013823          208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      ...+++++|....-+++++.+..       |.    +....+|++|++||||+.+|++|..
T Consensus        74 ~~~~~~LIG~~~~~~~~~eqik~-------~a----p~~~~vLi~GetGtGKel~A~~iH~  123 (403)
T COG1221          74 SEALDDLIGESPSLQELREQIKA-------YA----PSGLPVLIIGETGTGKELFARLIHA  123 (403)
T ss_pred             chhhhhhhccCHHHHHHHHHHHh-------hC----CCCCcEEEecCCCccHHHHHHHHHH
Confidence            35689999998888888777764       21    3346799999999999999999983

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=94.90  E-value=0.018  Score=54.78  Aligned_cols=27  Identities=30%  Similarity=0.458  Sum_probs=22.7

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ...-+.|.||+|+|||||+++||+.+.
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (241)
T cd03256          26 PGEFVALIGPSGAGKSTLLRCLNGLVE   52 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            334588999999999999999998653

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=94.90  E-value=0.017  Score=50.70  Aligned_cols=27  Identities=33%  Similarity=0.340  Sum_probs=22.9

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      .....+.|.||+|+|||+|+++|++.+
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          24 NPGDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            344568899999999999999998865

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=94.89  E-value=0.021  Score=55.44  Aligned_cols=29  Identities=24%  Similarity=0.260  Sum_probs=24.3

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |+....-++|.||||+|||+++..+|..+
T Consensus        26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~   54 (271)
T cd01122          26 GLRKGELIILTAGTGVGKTTFLREYALDL   54 (271)
T ss_pred             EEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45566678999999999999999988765

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=94.89  E-value=0.016  Score=54.00  Aligned_cols=24  Identities=38%  Similarity=0.654  Sum_probs=21.1

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -+.|.||+|+|||||+++|++.+.
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~~   50 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLTP   50 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999998653

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=94.88  E-value=0.018  Score=53.91  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=22.7

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ...-+.|.||+|+|||||+++|++.+.
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGIEK   54 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            334588999999999999999998653

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=94.87  E-value=0.022  Score=53.78  Aligned_cols=26  Identities=31%  Similarity=0.392  Sum_probs=22.6

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      .+.-+.|.||+|+|||||+++|++.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          25 KGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            33458899999999999999999876

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	436
2r62_A	268	Crystal Structure Of Helicobacter Pylori Atp Depend		6e-10
4b4t_L	437	Near-Atomic Resolution Structural Model Of The Yeas		4e-09
4b4t_K	428	Near-Atomic Resolution Structural Model Of The Yeas		9e-09
1lv7_A	257	Crystal Structure Of The Aaa Domain Of Ftsh Length		1e-07
4b4t_J	405	Near-Atomic Resolution Structural Model Of The Yeas		3e-07
2ce7_A	476	Edta Treated Length = 476		8e-07
4b4t_I	437	Near-Atomic Resolution Structural Model Of The Yeas		9e-07
3h4m_A	285	Aaa Atpase Domain Of The Proteasome- Activating Nuc		1e-06
4b4t_H	467	Near-Atomic Resolution Structural Model Of The Yeas		2e-06
2qz4_A	262	Human Paraplegin, Aaa Domain In Complex With Adp Le		2e-06
3kds_E	465	Apo-ftsh Crystal Structure Length = 465		4e-06
3cf1_A	806	Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len		7e-06
1r7r_A	816	The Crystal Structure Of Murine P97VCP AT 3.6A Leng		8e-06
4b4t_M	434	Near-Atomic Resolution Structural Model Of The Yeas		8e-06
1e32_A	458	Structure Of The N-Terminal Domain And The D1 Aaa D		9e-06
3hu2_A	489	Structure Of P97 N-D1 R86a Mutant In Complex With A		9e-06
3hu3_A	489	Structure Of P97 N-D1 R155h Mutant In Complex With		9e-06
3hu1_A	489	Structure Of P97 N-D1 R95g Mutant In Complex With A		1e-05
3cf0_A	301	Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH		3e-05
1ixz_A	254	Crystal Structure Of The Ftsh Atpase Domain From Th		3e-05
1iy2_A	278	Crystal Structure Of The Ftsh Atpase Domain From Th		4e-05
4eiw_A	508	Whole Cytosolic Region Of Atp-Dependent Metalloprot		4e-05
2dhr_A	499	Whole Cytosolic Region Of Atp-Dependent Metalloprot		4e-05
2x8a_A	274	Human Nuclear Valosin Containing Protein Like (Nvl)		1e-04

>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Length = 268

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 89/202 (44%), Gaps = 49/202 (24%)
Query: 203 INLEHPST-FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSS 261
           IN E P+  F  +A + E K+ +++ +D FL+  E Y  +G    +G LL GPPGTGK+ 
Sbjct: 1   INAEKPNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTL 59
Query: 262 LIAAMAN-----YLS------VEM---------------------------------KDR 277
           L  A+A      + S      +EM                                 K R
Sbjct: 60  LAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSR 119
Query: 278 QNDGASVGSNTK-LTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHI 336
              G   G++ +  TL+ +L  +DG  S      I++  TN  E +DPAL+RPGR D  +
Sbjct: 120 AAGGVVSGNDEREQTLNQLLAEMDGFGSENA-PVIVLAATNRPEILDPALMRPGRFDRQV 178
Query: 337 NMSYCTVHG-FKVLASNYLGIK 357
            +     +G  ++L  +  G+K
Sbjct: 179 LVDKPDFNGRVEILKVHIKGVK 200

>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 76/180 (42%), Gaps = 46/180 (25%)
Query: 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 269
           TFD +    E  + + + ++  L+  E ++RVG    +G LLYGPPGTGK+ L  A+A  
Sbjct: 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238
Query: 270 LSV-----------------------EM---------------------KDRQNDGASVG 285
           +                         EM                       R ++G S  
Sbjct: 239 IGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSAD 298
Query: 286 SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHG 345
              + TL  +L  +DG + + G  +II+  TN  + +DPALLRPGR+D  + +      G
Sbjct: 299 REIQRTLMELLTQMDG-FDNLGQTKIIM-ATNRPDTLDPALLRPGRLDRKVEIPLPNEAG 356

>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 428

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 46/160 (28%)
Query: 221 KQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLSVE-- 273
           KQ I + ++  L + + Y ++G    RG LLYGPPGTGK+ L+ A+AN     ++ V   
Sbjct: 181 KQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240
Query: 274 -------------MKD-----RQND-----------------GASVGSNTKL--TLSGIL 296
                        ++D     R+N                   A  GS+ ++   L  +L
Sbjct: 241 EFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELL 300
Query: 297 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHI 336
             +DG   S   +  ++  TN  + +DPALLRPGR+D  I
Sbjct: 301 TQMDGFDQSTNVK--VIMATNRADTLDPALLRPGRLDRKI 338

>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh Length = 257

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 49/182 (26%)
Query: 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 268
           +TF  +A   E K+ + + L  +LR    ++++G    +G L+ GPPGTGK+ L  A+A 
Sbjct: 9   TTFADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67
Query: 269 -----YLSVEMKD-----------RQND-------------------------GASVGSN 287
                + ++   D           R  D                         GA +G  
Sbjct: 68  EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG 127
Query: 288 ---TKLTLSGILNFIDGLWSSCGDERIIVF-TTNHKERIDPALLRPGRMDVHINMSYCTV 343
               + TL+ +L  +DG     G+E IIV   TN  + +DPALLRPGR D  + +    V
Sbjct: 128 HDEREQTLNQMLVEMDGFE---GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 184
Query: 344 HG 345
            G
Sbjct: 185 RG 186

>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 405

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 48/173 (27%)
Query: 209 STFDTLA-MDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMA 267
           ST+D +  +  ++K+ I + ++  ++  E +  +G A  +G +LYGPPGTGK+ L  A+A
Sbjct: 145 STYDMVGGLTKQIKE-IKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVA 203
Query: 268 NYLSVE-------------------------------------------MKDRQNDGASV 284
           ++   +                                           +   + +G+  
Sbjct: 204 HHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGG 263
Query: 285 G-SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHI 336
           G S  + T+  +LN +DG  +S   +  I+  TN  + +DPALLRPGR+D  I
Sbjct: 264 GDSEVQRTMLELLNQLDGFETSKNIK--IIMATNRLDILDPALLRPGRIDRKI 314

>pdb|2CE7|A Chain A, Edta Treated Length = 476

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 69/162 (42%), Gaps = 51/162 (31%)
Query: 219 ELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV------ 272
           ELK+++      FL+    + R+G    +G LL GPPGTGK+ L  A+A   +V      
Sbjct: 27  ELKEVV-----EFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHIS 81
Query: 273 --------------EMKD---------------------RQNDGASVGSN---TKLTLSG 294
                          ++D                      ++ GA +G      + TL+ 
Sbjct: 82  GSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQ 141
Query: 295 ILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHI 336
           +L  +DG  S  G   I++  TN  + +DPALLRPGR D  I
Sbjct: 142 LLVEMDGFDSKEG--IIVMAATNRPDILDPALLRPGRFDKKI 181

>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 66/159 (41%), Gaps = 46/159 (28%)
Query: 222 QMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE-------- 273
           Q I + ++  L   E Y  +G    +G +LYG PGTGK+ L  A+AN  S          
Sbjct: 192 QEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251
Query: 274 -MKDRQNDGASV--------GSNT---------------------------KLTLSGILN 297
            ++    DG  +        G N                            + T+  +LN
Sbjct: 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLN 311
Query: 298 FIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHI 336
            +DG +   GD ++I   TN  E +DPAL+RPGR+D  I
Sbjct: 312 QLDG-FDDRGDVKVI-MATNKIETLDPALIRPGRIDRKI 348

>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase Length = 285

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 46/146 (31%)
Query: 232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAM-----ANYLSVE----MKDRQNDGA 282
           L+  E + +VG    +G LLYGPPGTGK+ L  A+     A ++ V     +K    +GA
Sbjct: 37  LKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGA 96
Query: 283 SV---------------------------------GSNTKL--TLSGILNFIDGLWSSCG 307
           S+                                 G + ++  TL  +L  +DG + + G
Sbjct: 97  SLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG-FDARG 155
Query: 308 DERIIVFTTNHKERIDPALLRPGRMD 333
           D +II   TN  + +DPA+LRPGR D
Sbjct: 156 DVKII-GATNRPDILDPAILRPGRFD 180

>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 467

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 72/172 (41%), Gaps = 50/172 (29%)
Query: 236 EFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLSV------------------ 272
           E +  +G    +G LLYGPPGTGK+    A+AN     ++ V                  
Sbjct: 233 ERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVR 292
Query: 273 ---EMK------------------DRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERI 311
              EM                    R +DGA   +  + T+  ++  +DG +   G+ ++
Sbjct: 293 ELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDG-FDPRGNIKV 351
Query: 312 IVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSL 363
           + F TN    +DPALLRPGR+D  +  S   + G     +N   I  KS S+
Sbjct: 352 M-FATNRPNTLDPALLRPGRIDRKVEFSLPDLEG----RANIFRIHSKSMSV 398

>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp Length = 262

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 47/159 (29%)
Query: 231 FLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV------------------ 272
           +L+  E + ++G    +G LL GPPG GK+ L  A+A    V                  
Sbjct: 24  YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLG 83
Query: 273 ---------EMKDRQ------NDGASVGSNTKLTLSGILNF------------IDGLWSS 305
                    E + R       ++  +VG     T+SG  N             +DG+ ++
Sbjct: 84  AARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143
Query: 306 CGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVH 344
             D  I++ +TN  + +D AL+RPGR+D H+ +   T+ 
Sbjct: 144 --DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQ 180

>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 72/173 (41%), Gaps = 51/173 (29%)
Query: 219 ELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV------ 272
           ELK+++      FL+    + R+G    +G LL GPPGTG + L  A+A   +V      
Sbjct: 27  ELKEVV-----EFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEANVPFFHIS 81
Query: 273 --------------EMKD---------------------RQNDGASVGSN---TKLTLSG 294
                          ++D                      ++ GA +G      + TL+ 
Sbjct: 82  GSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQ 141
Query: 295 ILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFK 347
           +L  +DG  S  G   I++  TN  + +DPALLRPGR D  I +    + G K
Sbjct: 142 LLVEMDGFDSKEG--IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRK 192

>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 43/155 (27%)
Query: 232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY---------------------- 269
           LR    ++ +G    RG LLYGPPGTGK+ +  A+AN                       
Sbjct: 224 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283
Query: 270 --LSVEMKDRQNDGASV-----------------GSNTKLTLSGILNFIDGLWSSCGDER 310
             L    ++ + +  ++                 G   +  +S +L  +DGL        
Sbjct: 284 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA--HV 341
Query: 311 IIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHG 345
           I++  TN    IDPAL R GR D  +++      G
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376

>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 43/155 (27%)
Query: 232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY---------------------- 269
           LR    ++ +G    RG LLYGPPGTGK+ +  A+AN                       
Sbjct: 224 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283
Query: 270 --LSVEMKDRQNDGASV-----------------GSNTKLTLSGILNFIDGLWSSCGDER 310
             L    ++ + +  ++                 G   +  +S +L  +DGL        
Sbjct: 284 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA--HV 341
Query: 311 IIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHG 345
           I++  TN    IDPAL R GR D  +++      G
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376

>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 434

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 48/150 (32%)
Query: 232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLI---AAMANYLSVEMKDRQNDGASVGSNT 288
           ++R + ++ +G    +G L+YGPPGTGK+ L    AA  N   +++   Q     +G   
Sbjct: 201 MKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGA 260
Query: 289 KL-----------------------------------------TLSGILNFIDGLWSSCG 307
           KL                                         T+  +LN +DG  S   
Sbjct: 261 KLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS--- 317
Query: 308 DERI-IVFTTNHKERIDPALLRPGRMDVHI 336
           D+R+ ++  TN  + +DPALLR GR+D  I
Sbjct: 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKI 347

>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of Membrane Fusion Atpase P97 Length = 458

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 43/155 (27%)
Query: 232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY---------------------- 269
           LR    ++ +G    RG LLYGPPGTGK+ +  A+AN                       
Sbjct: 224 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283
Query: 270 --LSVEMKDRQNDGASV-----------------GSNTKLTLSGILNFIDGLWSSCGDER 310
             L    ++ + +  ++                 G   +  +S +L  +DGL        
Sbjct: 284 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA--HV 341
Query: 311 IIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHG 345
           I++  TN    IDPAL R GR D  +++      G
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376

>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 43/155 (27%)
Query: 232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY---------------------- 269
           LR    ++ +G    RG LLYGPPGTGK+ +  A+AN                       
Sbjct: 224 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283
Query: 270 --LSVEMKDRQNDGASV-----------------GSNTKLTLSGILNFIDGLWSSCGDER 310
             L    ++ + +  ++                 G   +  +S +L  +DGL        
Sbjct: 284 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA--HV 341
Query: 311 IIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHG 345
           I++  TN    IDPAL R GR D  +++      G
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376

>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 43/155 (27%)
Query: 232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY---------------------- 269
           LR    ++ +G    RG LLYGPPGTGK+ +  A+AN                       
Sbjct: 224 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283
Query: 270 --LSVEMKDRQNDGASV-----------------GSNTKLTLSGILNFIDGLWSSCGDER 310
             L    ++ + +  ++                 G   +  +S +L  +DGL        
Sbjct: 284 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA--HV 341
Query: 311 IIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHG 345
           I++  TN    IDPAL R GR D  +++      G
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376

>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 43/155 (27%)
Query: 232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY---------------------- 269
           LR    ++ +G    RG LLYGPPGTGK+ +  A+AN                       
Sbjct: 224 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283
Query: 270 --LSVEMKDRQNDGASV-----------------GSNTKLTLSGILNFIDGLWSSCGDER 310
             L    ++ + +  ++                 G   +  +S +L  +DGL        
Sbjct: 284 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA--HV 341
Query: 311 IIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHG 345
           I++  TN    IDPAL R GR D  +++      G
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376

>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP Length = 301

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 63/159 (39%), Gaps = 53/159 (33%)
Query: 219 ELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAM-----ANYLSV- 272
           EL Q  ++  D+FL+        G    +G L YGPPG GK+ L  A+     AN++S+ 
Sbjct: 29  ELVQYPVEHPDKFLK-------FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81
Query: 273 -----------------EMKDRQNDGASV---------------------GSNTKLTLSG 294
                            E+ D+    A                       G      ++ 
Sbjct: 82  GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQ 141
Query: 295 ILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMD 333
           IL  +DG+  S      I+  TN  + IDPA+LRPGR+D
Sbjct: 142 ILTEMDGM--STKKNVFIIGATNRPDIIDPAILRPGRLD 178

>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 254

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 62/160 (38%), Gaps = 48/160 (30%)
Query: 231 FLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLSVEMKD--------- 276
           FL+    +  +G    +G LL GPPG GK+ L  A+A      +++    D         
Sbjct: 34  FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 93
Query: 277 --RQND-------------------------GASVGSNT---KLTLSGILNFIDGLWSSC 306
             R  D                         G+ VG      + TL+ +L  +DG     
Sbjct: 94  AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-- 151
Query: 307 GDERIIVF-TTNHKERIDPALLRPGRMDVHINMSYCTVHG 345
            D  I+V   TN  + +DPALLRPGR D  I +    V G
Sbjct: 152 -DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190

>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 278

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 62/160 (38%), Gaps = 48/160 (30%)
Query: 231 FLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLSVEMKD--------- 276
           FL+    +  +G    +G LL GPPG GK+ L  A+A      +++    D         
Sbjct: 58  FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 277 --RQND-------------------------GASVGSNT---KLTLSGILNFIDGLWSSC 306
             R  D                         G+ VG      + TL+ +L  +DG     
Sbjct: 118 AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-- 175
Query: 307 GDERIIVF-TTNHKERIDPALLRPGRMDVHINMSYCTVHG 345
            D  I+V   TN  + +DPALLRPGR D  I +    V G
Sbjct: 176 -DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 214

>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 62/160 (38%), Gaps = 48/160 (30%)
Query: 231 FLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLSVEMKD--------- 276
           FL+    +  +G    +G LL GPPG GK+ L  A+A      +++    D         
Sbjct: 58  FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 277 --RQND-------------------------GASVGSNT---KLTLSGILNFIDGLWSSC 306
             R  D                         G+ VG      + TL+ +L  +DG     
Sbjct: 118 AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-- 175
Query: 307 GDERIIVF-TTNHKERIDPALLRPGRMDVHINMSYCTVHG 345
            D  I+V   TN  + +DPALLRPGR D  I +    V G
Sbjct: 176 -DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 214

>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 62/160 (38%), Gaps = 48/160 (30%)
Query: 231 FLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLSVEMKD--------- 276
           FL+    +  +G    +G LL GPPG GK+ L  A+A      +++    D         
Sbjct: 49  FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 108
Query: 277 --RQND-------------------------GASVGSNT---KLTLSGILNFIDGLWSSC 306
             R  D                         G+ VG      + TL+ +L  +DG     
Sbjct: 109 AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-- 166
Query: 307 GDERIIVF-TTNHKERIDPALLRPGRMDVHINMSYCTVHG 345
            D  I+V   TN  + +DPALLRPGR D  I +    V G
Sbjct: 167 -DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 205

>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C- Terminal Aaa-Atpase Domain Length = 274

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 53/148 (35%)
Query: 232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLSVE------------- 273
           +R  + ++ +G     G LL GPPG GK+ L  A+AN     ++SV+             
Sbjct: 30  VRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESE 89
Query: 274 -------------------------MKDRQND---GASVGSNTKLTLSGILNFIDGLWSS 305
                                    +  R++D   GASV       ++ +L  +DGL + 
Sbjct: 90  RAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASV-----RVVNQLLTEMDGLEAR 144
Query: 306 CGDERIIVFTTNHKERIDPALLRPGRMD 333
              +  I+  TN  + IDPA+LRPGR+D
Sbjct: 145 --QQVFIMAATNRPDIIDPAILRPGRLD 170

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	436
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	7e-14
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	2e-13
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	2e-13
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	3e-12
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	4e-12
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	2e-11
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	1e-10
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	6e-10
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	7e-10
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	1e-09
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	2e-09
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	2e-06
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	2e-06
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	3e-06
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	4e-06
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	4e-06
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	5e-06
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	8e-06
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	8e-06
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	2e-05
2qgz_A	308	Helicase loader, putative primosome component; str	3e-05
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	1e-04
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	1e-04
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	6e-04
2chq_A	319	Replication factor C small subunit; DNA-binding pr	8e-04

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 54/166 (32%)

Query: 219 ELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIA------AMANYLSV 272
           ++K+ + + +   +   + + + G    +G L YGPPG GK +L+A        AN++S+
Sbjct: 22  DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK-TLLAKAIANECQANFISI 80

Query: 273 ---EM-----------------KDRQN-------D---------GASVGSNTKLT---LS 293
              E+                 K RQ        D         G ++G         ++
Sbjct: 81  KGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVIN 140

Query: 294 GILNFIDGLWSSCGDERIIVF---TTNHKERIDPALLRPGRMDVHI 336
            IL  +DG+       +  VF    TN  + IDPA+LRPGR+D  I
Sbjct: 141 QILTEMDGM-----STKKNVFIIGATNRPDIIDPAILRPGRLDQLI 181

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285

 Score = 65.8 bits (161), Expect = 3e-12
 Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 46/149 (30%)

Query: 232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLSV-------------- 272
           L+  E + +VG    +G LLYGPPGTGK+ L  A+A      ++ V              
Sbjct: 37  LKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGA 96

Query: 273 ----EM----KD-----------------RQNDGASVGSNTKLTLSGILNFIDGLWSSCG 307
               ++    K+                 R +         + TL  +L  +DG   + G
Sbjct: 97  SLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF-DARG 155

Query: 308 DERIIVFTTNHKERIDPALLRPGRMDVHI 336
           D +II   TN  + +DPA+LRPGR D  I
Sbjct: 156 DVKIIG-ATNRPDILDPAILRPGRFDRII 183

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274

 Score = 65.3 bits (160), Expect = 4e-12
 Identities = 37/166 (22%), Positives = 64/166 (38%), Gaps = 57/166 (34%)

Query: 219 ELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIA------AMANYLSV 272
           ++++ +   +   +R  + ++ +G     G LL GPPG GK +L+A      +  N++SV
Sbjct: 17  DIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGK-TLLAKAVANESGLNFISV 75

Query: 273 -----------------------------------EM----KDRQNDGASVGSNTKLTLS 293
                                              E+      R +            ++
Sbjct: 76  KGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVR---VVN 132

Query: 294 GILNFIDGLWSSCGDERIIVF---TTNHKERIDPALLRPGRMDVHI 336
            +L  +DGL     + R  VF    TN  + IDPA+LRPGR+D  +
Sbjct: 133 QLLTEMDGL-----EARQQVFIMAATNRPDIIDPAILRPGRLDKTL 173

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 25/174 (14%), Positives = 48/174 (27%), Gaps = 62/174 (35%)

Query: 225 LDDLDRFLRR------KEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMA-----NYLSV- 272
                 F+ +      K F +           ++G  G GKS     +      N + + 
Sbjct: 9   FYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMS 68

Query: 273 --EMKD---------------------------------------RQNDGASVGSNTKL- 290
             E++                                        R         N ++ 
Sbjct: 69  AGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMV 128

Query: 291 --TLSGILNF-----IDGLWSSCGDERI-IVFTTNHKERIDPALLRPGRMDVHI 336
             TL  I +      + G+++   + R+ I+ T N    +   L+R GRM+   
Sbjct: 129 NATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFY 182

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 38/148 (25%), Positives = 55/148 (37%), Gaps = 43/148 (29%)

Query: 232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV------------------E 273
           LR    ++ +G    RG LLYGPPGTGK+ +  A+AN                      E
Sbjct: 224 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283

Query: 274 MKDRQ-----------------------NDGASVGSNTKLTLSGILNFIDGLWSSCGDER 310
              R+                           + G   +  +S +L  +DGL        
Sbjct: 284 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL--KQRAHV 341

Query: 311 IIVFTTNHKERIDPALLRPGRMDVHINM 338
           I++  TN    IDPAL R GR D  +++
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDI 369

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262

 Score = 58.8 bits (143), Expect = 6e-10
 Identities = 42/195 (21%), Positives = 73/195 (37%), Gaps = 66/195 (33%)

Query: 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN- 268
           +F  +A   E K  + + +D +L+  E + ++G    +G LL GPPG GK+ L  A+A  
Sbjct: 4   SFKDVAGMHEAKLEVREFVD-YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62

Query: 269 ----YLS------VEMKDRQNDGASVG----------SNTKLTLSGILNFID-------- 300
               +L+      VE+          G             +     I+ +ID        
Sbjct: 63  AQVPFLAMAGAEFVEV--------IGGLGAARVRSLFKEARARAPCIV-YIDEIDAVGKK 113

Query: 301 ---GLWSSCGDER--------------------IIVFTTNHKERIDPALLRPGRMDVHIN 337
               +      E                     I++ +TN  + +D AL+RPGR+D H+ 
Sbjct: 114 RSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVF 173

Query: 338 MSYCTVHG----FKV 348
           +   T+      F+ 
Sbjct: 174 IDLPTLQERREIFEQ 188

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 56/196 (28%)

Query: 193 GGGGGGMWG-------SINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAW 245
            G     +         +      TF  +A   E K+ + + ++ FL+    +  +G   
Sbjct: 14  AGPSDSAFSFTKSRARVLTEAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARI 72

Query: 246 KRGYLLYGPPGTGKSSLIAAMAN-----YLS------VEM---------KD--------- 276
            +G LL GPPG GK+ L  A+A      +++      VEM         +D         
Sbjct: 73  PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHA 132

Query: 277 -------------RQNDGASVGSNT---KLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 320
                        R+  G+ VG      + TL+ +L  +DG         +++  TN  +
Sbjct: 133 PCIVFIDEIDAVGRKR-GSGVGGGNDEREQTLNQLLVEMDGFEKDTA--IVVMAATNRPD 189

Query: 321 RIDPALLRPGRMDVHI 336
            +DPALLRPGR D  I
Sbjct: 190 ILDPALLRPGRFDRQI 205

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 49/172 (28%)

Query: 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN- 268
           TF  +A   E K+ + + ++ +LR    ++++G    +G L+ GPPGTGK+ L  A+A  
Sbjct: 10  TFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68

Query: 269 ----YLS------VEM---------KD----------------------RQNDGASVGSN 287
               + +      VEM         +D                      RQ  GA +G  
Sbjct: 69  AKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR-GAGLGGG 127

Query: 288 T---KLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHI 336
               + TL+ +L  +DG   + G   I++  TN  + +DPALLRPGR D  +
Sbjct: 128 HDEREQTLNQMLVEMDGFEGNEG--IIVIAATNRPDVLDPALLRPGRFDRQV 177

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 47/172 (27%), Positives = 72/172 (41%), Gaps = 49/172 (28%)

Query: 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN- 268
           TF  +A   E K+  L ++  FL+    +  +G    +G LL GPPG GK+ L  A+A  
Sbjct: 14  TFKDVAGAEEAKEE-LKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72

Query: 269 ----YLS------VEM---------KD----------------------RQNDGASVGSN 287
               +++      VEM         +D                      R+  G+ VG  
Sbjct: 73  ARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR-GSGVGGG 131

Query: 288 T---KLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHI 336
               + TL+ +L  +DG         +++  TN  + +DPALLRPGR D  I
Sbjct: 132 NDEREQTLNQLLVEMDGFEKDTA--IVVMAATNRPDILDPALLRPGRFDRQI 181

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 49/173 (28%)

Query: 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN- 268
            F  +A + E K+ +++ +D FL+  E Y  +G    +G LL GPPGTGK+ L  A+A  
Sbjct: 9   RFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67

Query: 269 ----YLS------VEM---------KD----------------------RQNDGASVGSN 287
               + S      +EM         +D                      +      V S 
Sbjct: 68  AHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSG 127

Query: 288 T---KLTLSGILNFIDGLWSSCGDERIIVF-TTNHKERIDPALLRPGRMDVHI 336
               + TL+ +L  +DG  S   +  +IV   TN  E +DPAL+RPGR D  +
Sbjct: 128 NDEREQTLNQLLAEMDGFGS--ENAPVIVLAATNRPEILDPALMRPGRFDRQV 178

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 5e-08
 Identities = 55/387 (14%), Positives = 111/387 (28%), Gaps = 109/387 (28%)

Query: 76  FDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGEEVTDSFQNV--QLQWKFVCKEP 133
           F+  E   + K     + L V + +   NF       ++V D  +++  + +   +    
Sbjct: 9   FETGEHQYQYK-----DILSVFEDAFVDNFDC-----KDVQDMPKSILSKEEIDHIIMSK 58

Query: 134 QNNHSGEKRYFELSFHKKHKQTVICY--------YLPHVVER-AKEIKQEEKVVKLYNRE 184
            +  SG  R F      K ++ V  +        Y   ++     E +Q   + ++Y   
Sbjct: 59  -DAVSGTLRLFWT-LLSKQEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMYI-- 113

Query: 185 CPYDDDDDGGGGGGMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA 244
                                      D L  D ++           + R + Y ++ +A
Sbjct: 114 ------------------------EQRDRLYNDNQVFA------KYNVSRLQPYLKLRQA 143

Query: 245 WKR-----GYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASVGSNTKLTLSGILNFI 299
                     L+ G  G+GK+ +   +    S +++ + +                  F 
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCL--SYKVQCKMDFKI---------------F- 185

Query: 300 DGLWSSCG----DERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 355
              W +       E ++        +IDP      R D   N+    +H  +      L 
Sbjct: 186 ---WLNLKNCNSPETVLEMLQKLLYQIDPNWTS--RSDHSSNIKL-RIHSIQAELRRLLK 239

Query: 356 IKGKSHSLFGEIEGLIQSTDVTPAEVAEE-------LMKADDADVALEGLVNFLKRKRIQ 408
            K   + L      L+   +V  A+           L+      V     ++      I 
Sbjct: 240 SKPYENCL------LVLL-NVQNAKAWNAFNLSCKILLTTRFKQVTD--FLSAATTTHIS 290

Query: 409 ADESKNNDVKGEEANEVEHEKAKQLKT 435
            D            +EV+    K L  
Sbjct: 291 LDHHS----MTLTPDEVKSLLLKYLDC 313

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 56/340 (16%), Positives = 102/340 (30%), Gaps = 91/340 (26%)

Query: 20  TLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNLTLV----------FDEWSG 69
           T      LL  + +   PQ L   + TT      NP    L+++          +D W  
Sbjct: 299 TPDEVKSLLLKYLD-CRPQDLPREVLTT------NPRR--LSIIAESIRDGLATWDNWKH 349

Query: 70  MSRNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGEEVTDSFQNVQLQWKFV 129
           ++ +++    E  L   + P   R            +V       +      + L W  V
Sbjct: 350 VNCDKLTTIIESSLN-VLEPAEYR------KMFDRLSV-FPPSAHIPT--ILLSLIWFDV 399

Query: 130 CKEPQNNHSGEKRYFELSFHKK------HKQTVICYYLPHV-----VERAKEIKQEEKVV 178
            K        +        HK        K++     +P +     V+   E      +V
Sbjct: 400 IKS-------DVMVVVNKLHKYSLVEKQPKEST--ISIPSIYLELKVKLENEYALHRSIV 450

Query: 179 KLYNRECPYDDDD------DGGGGGGMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFL 232
             YN    +D DD      D       + S    H    +        + + LD   RFL
Sbjct: 451 DHYNIPKTFDSDDLIPPYLD-----QYFYSHIGHHLKNIEHPERMTLFRMVFLD--FRFL 503

Query: 233 RRKEFYRRVGKAWK-RGYLLYGPPGTGKSSLIAAMANYLS-VEMKDRQNDGASVGSNTKL 290
            +K   R    AW   G +L         + +  +  Y   +   D + +          
Sbjct: 504 EQK--IRHDSTAWNASGSIL---------NTLQQLKFYKPYICDNDPKYER--------- 543

Query: 291 TLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPG 330
            ++ IL+F+        +  I    + + + +  AL+   
Sbjct: 544 LVNAILDFL----PKIEENLIC---SKYTDLLRIALMAED 576

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 25/178 (14%), Positives = 56/178 (31%), Gaps = 49/178 (27%)

Query: 202 SINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSS 261
             +         +     + + +LDD +  +++ +   R         LL GPP +GK++
Sbjct: 24  QEDYASYIMNGIIKWGDPVTR-VLDDGELLVQQTKNSDRTPL---VSVLLEGPPHSGKTA 79

Query: 262 LIAAMAN-----YLSV-----------EMK------------------------DRQNDG 281
           L A +A      ++ +             K                        +R  D 
Sbjct: 80  LAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDY 139

Query: 282 ASVGSN-TKLTLSGILNFIDGLWSSCGDERIIVF-TTNHKERIDPALLRPGRMDVHIN 337
             +G   + L L  +L  +          ++++  TT+ K+ +   +         I+
Sbjct: 140 VPIGPRFSNLVLQALLVLLKKAPPQ--GRKLLIIGTTSRKDVLQ-EMEMLNAFSTTIH 194

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 268
             R E +  +    K G LL+GPPG GK+ L  A+A 
Sbjct: 41  SVRPELFTGLRAPAK-GLLLFGPPGNGKTLLARAVAT 76

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Length = 202

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 269
           +   + ++ + +   +   +RF+   E  ++      +G  L+G  G GK+ L+AA+AN 
Sbjct: 23  SLSDVDLNDDGRIKAIRFAERFVAEYEPGKK-----MKGLYLHGSFGVGKTYLLAAIANE 77

Query: 270 L 270
           L
Sbjct: 78  L 78

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 268
           + R + +  +    K G LL+GPPGTGK+ +   +A+
Sbjct: 104 MLRPDIFTGLRGPPK-GILLFGPPGTGKTLIGKCIAS 139

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 268
             R E +  +    + G LL+GPPG GK+ L  A+A 
Sbjct: 135 SLRPELFTGLRAPAR-GLLLFGPPGNGKTMLAKAVAA 170

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 49/203 (24%), Positives = 71/203 (34%), Gaps = 76/203 (37%)

Query: 193 GGGGGGMWG-------SINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAW 245
            G     +         +      TF  +A   E K+  L ++  FL+    +  +G   
Sbjct: 5   AGPSDSAFSFTKSRARVLTEAPKVTFKDVAGAEEAKEE-LKEIVEFLKNPSRFHEMGARI 63

Query: 246 KRGYLLYGPPGTGKSSL---IAAMAN--YLS------VEMKDRQNDGASVG--------- 285
            +G LL GPPG GK+ L   +A  A   +++      VEM         VG         
Sbjct: 64  PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM--------FVGVGAARVRDL 115

Query: 286 -SNTKLTLSGILNFID-----------GLWSSCG---DER-------------------- 310
               K     I+ FID           G+    G   DER                    
Sbjct: 116 FETAKRHAPCIV-FIDEIDAVGRKRGSGV----GGGNDEREQTLNQLLVEMDGFEKDTAI 170

Query: 311 IIVFTTNHKERIDPALLRPGRMD 333
           +++  TN  + +DPALLRPGR D
Sbjct: 171 VVMAATNRPDILDPALLRPGRFD 193

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476

 Score = 46.8 bits (112), Expect = 8e-06
 Identities = 51/182 (28%), Positives = 69/182 (37%), Gaps = 69/182 (37%)

Query: 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSL---IAAM 266
           TF  +    E  +  L ++  FL+    + R+G    +G LL GPPGTGK+ L   +A  
Sbjct: 14  TFKDVGGAEEAIEE-LKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72

Query: 267 AN--YLS------VEMKDRQNDGASVG----------SNTKLTLSGILNFID-------- 300
           AN  +        VE+         VG          +  K     I+ FID        
Sbjct: 73  ANVPFFHISGSDFVEL--------FVGVGAARVRDLFAQAKAHAPCIV-FIDEIDAVGRH 123

Query: 301 ---GLWSSCG---DER--------------------IIVFTTNHKERIDPALLRPGRMDV 334
              GL    G   DER                    I++  TN  + +DPALLRPGR D 
Sbjct: 124 RGAGL----GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDK 179

Query: 335 HI 336
            I
Sbjct: 180 KI 181

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 268
           ++    +      W+ G LL+GPPGTGKS L  A+A 
Sbjct: 32  IKFPHLFTGKRTPWR-GILLFGPPGTGKSYLAKAVAT 67

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 268
           ++    ++   K    G LLYGPPGTGKS L  A+A 
Sbjct: 38  VKFPHLFKGNRKPTS-GILLYGPPGTGKSYLAKAVAT 73

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Length = 308

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 269
               + ++   +      +       +F  +   A ++G  LYG  G GKS L+AAMA+ 
Sbjct: 122 HLSDIDVNNASRMEAFSAI------LDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE 175

Query: 270 L 270
           L
Sbjct: 176 L 176

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Length = 180

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 6/62 (9%)

Query: 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 268
           +  DT       +   L  +      + F         +G    G PG GK+ L  A   
Sbjct: 7   ANLDTYHPKNVSQNRALLTI------RVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK 60

Query: 269 YL 270
            +
Sbjct: 61  AI 62

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 15/121 (12%)

Query: 208 PSTFDTLAMDPE----LKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLI 263
           P+    +  +      LK  + +  +      +   + G    R  +LYGPPG GK++  
Sbjct: 35  PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAA 94

Query: 264 AAMANYLS---VEM-------KDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIV 313
             +A  L    +E        K   N G     +   ++ G     +   +  G   +I+
Sbjct: 95  HLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNM-SVVGYFKHNEEAQNLNGKHFVII 153

Query: 314 F 314
            
Sbjct: 154 M 154

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 268
           ++    +      W+ G LL+GPPGTGKS L  A+A 
Sbjct: 154 IKFPHLFTGKRTPWR-GILLFGPPGTGKSYLAKAVAT 189

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 250 LLYGPPGTGKSSLIAAMANYL 270
           L  GPPGTGK++   A+A  L
Sbjct: 42  LFSGPPGTGKTATAIALARDL 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	436
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	100.0
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	100.0
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	100.0
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	100.0
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	100.0
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	100.0
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.95
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.94
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.93
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	99.92
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.88
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.88
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.88
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	99.88
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	99.87
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	99.87
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.86
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	99.85
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.85
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.85
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.84
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	99.84
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	99.81
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.81
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.81
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	99.81
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	99.8
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.74
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	99.73
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	99.69
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	99.58
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	99.54
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	99.51
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	99.48
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	99.39
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.37
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	99.34
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	99.33
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	99.32
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.32
2chq_A	319	Replication factor C small subunit; DNA-binding pr	99.3
3pvs_A	447	Replication-associated recombination protein A; ma	99.3
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	99.28
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	99.27
2r44_A	331	Uncharacterized protein; putative ATPase, structur	99.27
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	99.24
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	99.23
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	99.21
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	99.21
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	99.21
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	99.2
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	99.19
3bos_A	242	Putative DNA replication factor; P-loop containing	99.19
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.19
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	99.17
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.15
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	99.15
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	99.11
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.09
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	99.08
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	99.05
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	99.05
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.02
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.02
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	98.95
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.94
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	98.93
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	98.92
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	98.91
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	98.89
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	98.89
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	98.88
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.85
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	98.85
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	98.79
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.75
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	98.74
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.68
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	98.67
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	98.59
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.56
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	98.52
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.44
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	98.37
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.33
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.19
1tue_A	212	Replication protein E1; helicase, replication, E1E	98.14
3co5_A	143	Putative two-component system transcriptional RES	98.11
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	98.08
2qgz_A	308	Helicase loader, putative primosome component; str	98.06
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.84
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	97.52
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.47
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.29
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.26
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.23
3f8t_A	506	Predicted ATPase involved in replication control,	97.23
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.23
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.21
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.13
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	97.12
1via_A	175	Shikimate kinase; structural genomics, transferase	97.1
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.09
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.08
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.05
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.04
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.01
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.97
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.96
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.93
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.93
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.93
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.92
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.91
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.9
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.89
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.87
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.86
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.86
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.86
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.85
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.85
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.83
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.83
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.83
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.82
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.81
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.8
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.77
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.77
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.77
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.77
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.76
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.75
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.75
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.75
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.74
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.73
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.72
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.71
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.69
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.69
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	96.67
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.67
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.67
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.67
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.65
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.64
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.62
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.59
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.58
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.57
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.52
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	96.51
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.51
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.51
2fna_A	357	Conserved hypothetical protein; structural genomic	96.48
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.47
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.47
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.45
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.44
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	96.43
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.43
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.42
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.41
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.41
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	96.41
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.38
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.38
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.37
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.35
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.31
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.31
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.31
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.26
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.23
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.23
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.22
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.22
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.22
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.2
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.18
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.18
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.18
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.16
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.15
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.14
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.13
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.08
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.07
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.02
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.01
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.0
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.99
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	95.97
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.97
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	95.96
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.96
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.95
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.94
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.94
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	95.93
1u94_A	356	RECA protein, recombinase A; homologous recombinat	95.92
2og2_A	359	Putative signal recognition particle receptor; nuc	95.91
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.9
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.89
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.87
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	95.85
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	95.83
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	95.82
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	95.81
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	95.81
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.79
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.78
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.77
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.76
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.76
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.75
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	95.74
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.72
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.7
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	95.69
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.68
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	95.68
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.67
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.67
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.66
3kw6_A	78	26S protease regulatory subunit 8; structural geno	95.61
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	95.59
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.59
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	95.56
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	95.55
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	95.54
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.53
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.47
1xp8_A	366	RECA protein, recombinase A; recombination, radior	95.47
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	95.45
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.39
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.38
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	95.33
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	95.3
3io5_A	333	Recombination and repair protein; storage dimer, i	95.29
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.23
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.21
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	95.16
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	95.16
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.15
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	95.14
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.12
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	95.1
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	95.1
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.08
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.02
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.01
2ged_A	193	SR-beta, signal recognition particle receptor beta	94.98
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	94.95
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	94.94
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	94.92
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	94.89
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	94.87
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	94.85
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	94.84
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	94.83
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	94.77
2r6a_A	454	DNAB helicase, replicative helicase; replication,	94.75
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	94.73
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	94.67
1b0u_A	262	Histidine permease; ABC transporter, transport pro	94.63
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	94.62
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	94.61
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	94.6
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	94.52
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	94.52
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	94.5
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	94.49
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	94.49
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	94.48
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	94.47
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	94.46
1sgw_A	214	Putative ABC transporter; structural genomics, P p	94.45
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	94.45
1g6h_A	257	High-affinity branched-chain amino acid transport	94.45
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	94.44
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	94.44
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	94.42
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	94.42
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	94.4
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	94.4
2ghi_A	260	Transport protein; multidrug resistance protein, M	94.39
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	94.38
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	94.36
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	94.34
1nrj_B	218	SR-beta, signal recognition particle receptor beta	94.34
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	94.3
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	94.28
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	94.27
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	94.26
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	94.26
1ji0_A	240	ABC transporter; ATP binding protein, structural g	94.25
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	94.24
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	94.24
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	94.23
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	94.23
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	94.21
2wji_A	165	Ferrous iron transport protein B homolog; membrane	94.21
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	94.2
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.19
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	94.17
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	94.17
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	94.14
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	94.13
2xzl_A	802	ATP-dependent helicase NAM7; hydrolase-RNA complex	94.13
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	94.11
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	94.11
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	94.1
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	94.09
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	94.09
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	94.09
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	94.08
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	94.06
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	94.05
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	94.05
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	94.05
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	94.05
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	94.05
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	94.04
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	94.04
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.02
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	94.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	93.96
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	93.92
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	93.92
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	93.92
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	93.89
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	93.88
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	93.88
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	93.87
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	93.83
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	93.79
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	93.79
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	93.78
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	93.75
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	93.75
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	93.75
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	93.74
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	93.72
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	93.71
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	93.71
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	93.7
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	93.67
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	93.63
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	93.6
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	93.58
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	93.57
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	93.56
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	93.56
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	93.55
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	93.53
2krk_A	86	26S protease regulatory subunit 8; structural geno	93.5
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	93.5
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	93.49
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	93.47
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	93.47
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	93.46
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	93.46
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	93.46
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	93.45
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	93.44
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	93.44
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	93.43
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	93.42
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	93.41
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	93.37
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	93.36
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	93.35
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	93.33
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	93.32
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	93.31
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	93.28
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	93.27
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	93.27
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	93.26
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	93.25
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	93.22
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	93.2
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	93.19
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	93.15
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	93.14
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	93.14
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	93.14
2xxa_A	433	Signal recognition particle protein; protein trans	93.13
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	93.12
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	93.12
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	93.11
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	93.11
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	93.1
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	93.09
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	93.08
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	93.07
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	93.06
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	93.05
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	93.03
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	93.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	92.96
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	92.93
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	92.92
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	92.92
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	92.91
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	92.89
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	92.88
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	92.86
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	92.85
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	92.84
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	92.83
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	92.82
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	92.81
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	92.81
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	92.8
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	92.79
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	92.79
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	92.77
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	92.71
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	92.7
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	92.7
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	92.68
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	92.68
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	92.67
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	92.66
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	92.64
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	92.63
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	92.57
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	92.52
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	92.5
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	92.49
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	92.49
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	92.42
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	92.36
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	92.35
2hf9_A	226	Probable hydrogenase nickel incorporation protein	92.33
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	92.19
2fh5_B	214	SR-beta, signal recognition particle receptor beta	92.18
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	92.14
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	92.12
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	92.09
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	92.08
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	92.06
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	92.06
3ice_A	422	Transcription termination factor RHO; transcriptio	92.02
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	91.98
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	91.96
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	91.92
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	91.88
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	91.87
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	91.83
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	91.82
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	91.81
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	91.81
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	91.73
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	91.72
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	91.7
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	91.7
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	91.69
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	91.65
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	91.64
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	91.56
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	91.55
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	91.48
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	91.46
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	91.45
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	91.44
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	91.44
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	91.44
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	91.42
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	91.41
1qde_A	224	EIF4A, translation initiation factor 4A; DEAD box	91.36
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	91.3
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	91.24
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	91.18
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	91.15
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	91.1
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	91.09
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	91.09
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	91.08
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	90.99
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	90.98
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	90.96
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	90.94
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	90.94
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	90.92
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	90.91
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	90.89
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	90.78
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	90.73
1t6n_A	220	Probable ATP-dependent RNA helicase; RECA-like fol	90.59
3llu_A	196	RAS-related GTP-binding protein C; structural geno	90.49
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	90.49
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	90.43
3l0o_A	427	Transcription termination factor RHO; helicase, RH	90.43
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	90.42
3bor_A	237	Human initiation factor 4A-II; translation initiat	90.4

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-35  Score=299.32  Aligned_cols=177  Identities=25%  Similarity=0.322  Sum_probs=145.3

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccC------
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN------  279 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~------  279 (436)
                      .|..+|+||+|.+++|++|.+.+..|+.+|+.|.++|+++|+|+|||||||||||++|+|+|++++..+.....      
T Consensus       142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk  221 (405)
T 4b4t_J          142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK  221 (405)
T ss_dssp             SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS
T ss_pred             CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc
Confidence            45579999999999999999999999999999999999999999999999999999999999999933221110      


Q ss_pred             -------------------CCC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823          280 -------------------DGA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER  321 (436)
Q Consensus       280 -------------------~~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~  321 (436)
                                         .++                   ..+....++++.||+.|||+...  ++++||+|||+|+.
T Consensus       222 ~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~V~vIaATNrpd~  299 (405)
T 4b4t_J          222 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS--KNIKIIMATNRLDI  299 (405)
T ss_dssp             STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC--CCEEEEEEESCSSS
T ss_pred             ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC--CCeEEEeccCChhh
Confidence                               000                   01112345788999999999765  45999999999999


Q ss_pred             CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      ||||++||||||++|+||+|+.++|..||+.++....  .....++..++..+ +||+|||...|.
T Consensus       300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~--l~~dvdl~~lA~~t~G~SGADi~~l~~  363 (405)
T 4b4t_J          300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN--LTRGINLRKVAEKMNGCSGADVKGVCT  363 (405)
T ss_dssp             SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB--CCSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred             CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC--CCccCCHHHHHHHCCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999987653  22223455666554 599999998874

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-35  Score=298.05  Aligned_cols=180  Identities=25%  Similarity=0.340  Sum_probs=146.4

Q ss_pred             cccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc----
Q 013823          203 INLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ----  278 (436)
Q Consensus       203 ~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~----  278 (436)
                      +...+..+|+||+|.+++|++|.+.+..|+.+++.|.++|+++|+|||||||||||||++|+|+|++++..+....    
T Consensus       173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l  252 (437)
T 4b4t_I          173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL  252 (437)
T ss_dssp             EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred             eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence            3345667999999999999999999999999999999999999999999999999999999999999993322111    


Q ss_pred             ---------------------CC-------------------CCCCCCCcceeecceeecccCcccCCCCeEEEEEecCC
Q 013823          279 ---------------------ND-------------------GASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH  318 (436)
Q Consensus       279 ---------------------~~-------------------~~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~  318 (436)
                                           ..                   ....+.....+++.||+.|||+...  ++++||+|||+
T Consensus       253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~--~~ViVIaATNr  330 (437)
T 4b4t_I          253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR--GDVKVIMATNK  330 (437)
T ss_dssp             CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS--SSEEEEEEESC
T ss_pred             hhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC--CCEEEEEeCCC
Confidence                                 00                   0011122346788999999998765  45999999999


Q ss_pred             cCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          319 KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       319 ~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      |+.|||||+||||||++|+||+|+.++|..||+.++....  .....++..|+..+ +||+|||..+|.
T Consensus       331 pd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~--l~~dvdl~~LA~~T~GfSGADI~~l~~  397 (437)
T 4b4t_I          331 IETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN--LSEDVNLETLVTTKDDLSGADIQAMCT  397 (437)
T ss_dssp             STTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC--BCSCCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred             hhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC--CCCcCCHHHHHHhCCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999997642  11222455566544 599999998874

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-34  Score=296.84  Aligned_cols=178  Identities=26%  Similarity=0.364  Sum_probs=145.9

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccC-----
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN-----  279 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~-----  279 (436)
                      -.+..+|+||+|.+++|+.|.+.+..|+.+++.|.++|+++|+|+|||||||||||++|+|||++++.++.....     
T Consensus       174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s  253 (437)
T 4b4t_L          174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD  253 (437)
T ss_dssp             ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred             cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence            345579999999999999999999999999999999999999999999999999999999999999933221110     


Q ss_pred             ---------------------------------------CCCCCCCCcceeecceeecccCcccCCCCeEEEEEecCCcC
Q 013823          280 ---------------------------------------DGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE  320 (436)
Q Consensus       280 ---------------------------------------~~~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~  320 (436)
                                                             .+...+.....+++.||+.|||+.+.  ++++||+|||+|+
T Consensus       254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~vivI~ATNrp~  331 (437)
T 4b4t_L          254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL--GQTKIIMATNRPD  331 (437)
T ss_dssp             SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT--TSSEEEEEESSTT
T ss_pred             ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC--CCeEEEEecCCch
Confidence                                                   00011122345778899999999765  4599999999999


Q ss_pred             CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      .|||||+||||||.+|+||+|+.++|..||+.++....  .....++..++..+ +||+|||..+|.
T Consensus       332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~--~~~d~dl~~lA~~t~G~sGADi~~l~~  396 (437)
T 4b4t_L          332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVK--KTGEFDFEAAVKMSDGFNGADIRNCAT  396 (437)
T ss_dssp             SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSC--BCSCCCHHHHHHTCCSCCHHHHHHHHH
T ss_pred             hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCC--CCcccCHHHHHHhCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999987642  22223456666655 599999998874

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-34  Score=295.30  Aligned_cols=179  Identities=22%  Similarity=0.287  Sum_probs=145.7

Q ss_pred             ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCC---
Q 013823          204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQND---  280 (436)
Q Consensus       204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~---  280 (436)
                      .-.++.+|+||+|.+++|+.|.+.+..|+.+++.|.++|+++|+|+|||||||||||++|+|+|++++..+......   
T Consensus       173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~  252 (434)
T 4b4t_M          173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV  252 (434)
T ss_dssp             ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred             CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence            34566899999999999999999999999999999999999999999999999999999999999999332211110   


Q ss_pred             ----------------------CC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCc
Q 013823          281 ----------------------GA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK  319 (436)
Q Consensus       281 ----------------------~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~  319 (436)
                                            ++                   ........+++.||+.|||+.+.  ++++||+|||+|
T Consensus       253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~--~~ViVIaaTNrp  330 (434)
T 4b4t_M          253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD--DRVKVLAATNRV  330 (434)
T ss_dssp             SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS--CSSEEEEECSSC
T ss_pred             hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC--CCEEEEEeCCCc
Confidence                                  00                   00112345678899999999765  459999999999


Q ss_pred             CCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          320 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       320 ~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      +.||||++||||||++|+||+|+.++|..||+.++......  ...++..|+..+ +||+|||...|.
T Consensus       331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~--~dvdl~~lA~~t~G~sGADi~~l~~  396 (434)
T 4b4t_M          331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD--DDINWQELARSTDEFNGAQLKAVTV  396 (434)
T ss_dssp             CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC--SCCCHHHHHHHCSSCCHHHHHHHHH
T ss_pred             hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC--CcCCHHHHHHhCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999998754211  112345555544 599999998875

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-34  Score=293.07  Aligned_cols=178  Identities=25%  Similarity=0.381  Sum_probs=145.6

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ------  278 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~------  278 (436)
                      -.+..+|+||+|.+++|+.|.+.+..|+.+++.|.++|+++|+|+|||||||||||++|+|+|++++..+....      
T Consensus       165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~  244 (428)
T 4b4t_K          165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH  244 (428)
T ss_dssp             SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred             CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence            34557999999999999999999999999999999999999999999999999999999999999993222111      


Q ss_pred             --------------------------------------CCCCCCCCCcceeecceeecccCcccCCCCeEEEEEecCCcC
Q 013823          279 --------------------------------------NDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE  320 (436)
Q Consensus       279 --------------------------------------~~~~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~  320 (436)
                                                            ......+....+++++||+.|||+.+..  +++||+|||+|+
T Consensus       245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~--~v~vI~aTN~~~  322 (428)
T 4b4t_K          245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST--NVKVIMATNRAD  322 (428)
T ss_dssp             SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC--SEEEEEEESCSS
T ss_pred             cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC--CEEEEEecCChh
Confidence                                                  0011112234567899999999998764  499999999999


Q ss_pred             CCCccccCCCceeEEEEcC-CCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          321 RIDPALLRPGRMDVHINMS-YCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       321 ~lD~AllRpGR~d~~I~~~-~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      .||||++||||||++|+|| +|+.++|..||+.++....  .....++..++..+ +||+|||...|.
T Consensus       323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~--l~~~~dl~~lA~~t~G~sgadi~~l~~  388 (428)
T 4b4t_K          323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS--LAPEADLDSLIIRNDSLSGAVIAAIMQ  388 (428)
T ss_dssp             SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC--BCTTCCHHHHHHHTTTCCHHHHHHHHH
T ss_pred             hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC--CCcccCHHHHHHHCCCCCHHHHHHHHH
Confidence            9999999999999999996 8999999999999987542  11122355666544 699999998875

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-34  Score=293.48  Aligned_cols=177  Identities=23%  Similarity=0.274  Sum_probs=143.5

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccC------
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN------  279 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~------  279 (436)
                      .|..+|+||+|.+++|++|.+.+..++.+++.|.++|+++|+|+|||||||||||++|+|||++++..+.....      
T Consensus       203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk  282 (467)
T 4b4t_H          203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK  282 (467)
T ss_dssp             SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCC
T ss_pred             CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcc
Confidence            44579999999999999999999999999999999999999999999999999999999999999933221110      


Q ss_pred             -------------------CCC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823          280 -------------------DGA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER  321 (436)
Q Consensus       280 -------------------~~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~  321 (436)
                                         .++                   ........+++.||+.||++...  ++++||+|||+|+.
T Consensus       283 ~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~ViVIaATNrpd~  360 (467)
T 4b4t_H          283 YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR--GNIKVMFATNRPNT  360 (467)
T ss_dssp             SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT--TTEEEEEECSCTTS
T ss_pred             cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC--CcEEEEeCCCCccc
Confidence                               000                   00112345678899999998765  45999999999999


Q ss_pred             CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      ||||++||||||++|+||+|+.++|..||+.++....  .....+++.|+..+ +||+|||..+|.
T Consensus       361 LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~--l~~dvdl~~LA~~T~GfSGADI~~l~~  424 (467)
T 4b4t_H          361 LDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS--VERGIRWELISRLCPNSTGAELRSVCT  424 (467)
T ss_dssp             BCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC--BCSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred             CChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC--CCCCCCHHHHHHHCCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999987652  11112345555544 599999998874

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.95  E-value=1e-29  Score=277.32  Aligned_cols=177  Identities=24%  Similarity=0.334  Sum_probs=128.1

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc---------
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD---------  276 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~---------  276 (436)
                      .+..+|++|+|.+++|+.|.+.+..++.+++.|.+.|..+++|+|||||||||||++|+|+|++++..+..         
T Consensus       471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~  550 (806)
T 3cf2_A          471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM  550 (806)
T ss_dssp             CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred             CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence            34579999999999999999999999999999999999999999999999999999999999999922211         


Q ss_pred             ----------------ccCCCC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823          277 ----------------RQNDGA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER  321 (436)
Q Consensus       277 ----------------r~~~~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~  321 (436)
                                      +...++                   ..+....+++++||++|||+.+.  ++++||+|||+|+.
T Consensus       551 ~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~--~~V~vi~aTN~p~~  628 (806)
T 3cf2_A          551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDI  628 (806)
T ss_dssp             TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS--SSEEEECC-CCSSS
T ss_pred             ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC--CCEEEEEeCCCchh
Confidence                            111111                   11234567889999999999765  45999999999999


Q ss_pred             CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      ||||++||||||.+|+||+|+.++|..||+.++....  .....++..|+..+ +||+|||.++|.
T Consensus       629 lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~--~~~~~dl~~la~~t~g~SGadi~~l~~  692 (806)
T 3cf2_A          629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP--VAKDVDLEFLAKMTNGFSGADLTEICQ  692 (806)
T ss_dssp             SCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC----CCC----------------CHHHHHH
T ss_pred             CCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCC--CCCCCCHHHHHHhCCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999997652  22234566677665 499999999886

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.94  E-value=1.1e-27  Score=261.26  Aligned_cols=176  Identities=26%  Similarity=0.307  Sum_probs=144.6

Q ss_pred             CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc---------
Q 013823          207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR---------  277 (436)
Q Consensus       207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r---------  277 (436)
                      +..+|++|+|.+++|++|.+.+..++.+++.|..+|..+|+|+|||||||||||+||+++|++++..++..         
T Consensus       199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~  278 (806)
T 3cf2_A          199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL  278 (806)
T ss_dssp             SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC
T ss_pred             CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc
Confidence            34689999999999999999999999999999999999999999999999999999999999999222111         


Q ss_pred             ----------------cCCCC----------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCcc
Q 013823          278 ----------------QNDGA----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPA  325 (436)
Q Consensus       278 ----------------~~~~~----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~A  325 (436)
                                      ...++                ..+...++++++||..||++...  ..++||+|||+++.||||
T Consensus       279 ~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~--~~V~VIaaTN~~d~LD~A  356 (806)
T 3cf2_A          279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPA  356 (806)
T ss_dssp             TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG--GCEEEEEECSSTTTSCTT
T ss_pred             chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc--CCEEEEEecCChhhcCHH
Confidence                            00000                11234456788999999999765  459999999999999999


Q ss_pred             ccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          326 LLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       326 llRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      |+||||||+.|+|+.|+.++|..|++.++....  .....++..++..+ +|+++||...|.
T Consensus       357 LrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~--~~~dvdl~~lA~~T~GfsgaDL~~Lv~  416 (806)
T 3cf2_A          357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVANETHGHVGADLAALCS  416 (806)
T ss_dssp             TTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE--ECTTCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred             HhCCcccceEEecCCCCHHHHHHHHHHHhcCCC--CCcccCHHHHHHhcCCCCHHHHHHHHH
Confidence            999999999999999999999999999987542  22233456666654 599999988775

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.93  E-value=1.5e-25  Score=217.55  Aligned_cols=178  Identities=21%  Similarity=0.274  Sum_probs=130.9

Q ss_pred             CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccC-------
Q 013823          207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN-------  279 (436)
Q Consensus       207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~-------  279 (436)
                      +..+|++|+|.+++|+.|.+.+..++.+++.+..+|+..++|++|+||||||||+|+++||++++..+.....       
T Consensus         5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~   84 (274)
T 2x8a_A            5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY   84 (274)
T ss_dssp             -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence            4568999999999999999999999999999999999999999999999999999999999998722111100       


Q ss_pred             ------------------CCC-----C-----------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCcc
Q 013823          280 ------------------DGA-----S-----------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPA  325 (436)
Q Consensus       280 ------------------~~~-----~-----------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~A  325 (436)
                                        .++     +           .........+.++..|+|....  ..++++++||+|+.||+|
T Consensus        85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~--~~~i~ia~tn~p~~LD~a  162 (274)
T 2x8a_A           85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR--QQVFIMAATNRPDIIDPA  162 (274)
T ss_dssp             THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST--TCEEEEEEESCGGGSCHH
T ss_pred             hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc--CCEEEEeecCChhhCCHh
Confidence                              000     0           0001123445677778877543  448999999999999999


Q ss_pred             ccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCC-CCCcHHHHHhhhhc---CCCCHHHHHHHHh
Q 013823          326 LLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGK-SHSLFGEIEGLIQS---TDVTPAEVAEELM  386 (436)
Q Consensus       326 llRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~-~~~~~~~i~~l~~~---~~~tpaei~~~l~  386 (436)
                      ++||||||.+|++++|+.++|..|++.++..... ......+++.++..   .+||+|||...|.
T Consensus       163 l~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~  227 (274)
T 2x8a_A          163 ILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVR  227 (274)
T ss_dssp             HHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHH
T ss_pred             hcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHH
Confidence            9999999999999999999999999999854210 11112234455543   3799999998875

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=99.92  E-value=3.2e-24  Score=210.64  Aligned_cols=177  Identities=23%  Similarity=0.315  Sum_probs=139.1

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc-------
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ-------  278 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~-------  278 (436)
                      .++.+|++|+|.+++|+.|.+.+..++..++.|..+|+.+++++|||||||||||++|+++|++++..+....       
T Consensus         9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~   88 (301)
T 3cf0_A            9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM   88 (301)
T ss_dssp             CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred             CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence            4567899999999999999999999999999999999999999999999999999999999999882221100       


Q ss_pred             ------------------CCCC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823          279 ------------------NDGA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER  321 (436)
Q Consensus       279 ------------------~~~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~  321 (436)
                                        ..++                   ..+......++.||..||++...  .+++||+|||+++.
T Consensus        89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~--~~v~vi~atn~~~~  166 (301)
T 3cf0_A           89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDI  166 (301)
T ss_dssp             HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT--SSEEEEEEESCGGG
T ss_pred             hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC--CCEEEEEecCCccc
Confidence                              0000                   00112234567788899987643  45999999999999


Q ss_pred             CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhc-CCCCHHHHHHHHh
Q 013823          322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM  386 (436)
Q Consensus       322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~-~~~tpaei~~~l~  386 (436)
                      ||++++|||||+..|+++.|+.++|..|++.++...+..  ...++..++.. .+++++||...|.
T Consensus       167 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~--~~~~~~~la~~~~g~sg~dl~~l~~  230 (301)
T 3cf0_A          167 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA--KDVDLEFLAKMTNGFSGADLTEICQ  230 (301)
T ss_dssp             SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC--SSCCHHHHHHTCSSCCHHHHHHHHH
T ss_pred             cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC--ccchHHHHHHHcCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999765311  11223344433 4699999988774

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.88  E-value=1.3e-22  Score=193.46  Aligned_cols=176  Identities=26%  Similarity=0.346  Sum_probs=126.8

Q ss_pred             CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC-----
Q 013823          208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA-----  282 (436)
Q Consensus       208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~-----  282 (436)
                      +.+|++|+|.+++|+.|.+.+. ++..++.|...|...++++|||||||||||++|+++|++++..+........     
T Consensus         2 ~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~   80 (262)
T 2qz4_A            2 GVSFKDVAGMHEAKLEVREFVD-YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG   80 (262)
T ss_dssp             CCCTTSSCSCHHHHHHHHHHHH-HHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred             CCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence            5689999999999999988765 5778888999999999999999999999999999999998843322111100     


Q ss_pred             -------------------------CC---------------CCCcceeecceeecccCcccCCCCeEEEEEecCCcCCC
Q 013823          283 -------------------------SV---------------GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERI  322 (436)
Q Consensus       283 -------------------------~~---------------~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~l  322 (436)
                                               +.               .......+..|++.+++....  ..+++|+|||.++.+
T Consensus        81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~--~~~~vi~~tn~~~~l  158 (262)
T 2qz4_A           81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT--DHVIVLASTNRADIL  158 (262)
T ss_dssp             THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT--CCEEEEEEESCGGGG
T ss_pred             ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC--CCEEEEecCCChhhc
Confidence                                     00               011223345566666765432  458999999999999


Q ss_pred             CccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          323 DPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       323 D~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      |++++|||||+..++++.|+.++|..|+++++...+...........++... ++++++|...+.
T Consensus       159 d~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~  223 (262)
T 2qz4_A          159 DGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICN  223 (262)
T ss_dssp             GSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred             CHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999876532222222235555544 599999987764

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.88  E-value=2.6e-23  Score=215.93  Aligned_cols=175  Identities=27%  Similarity=0.346  Sum_probs=134.7

Q ss_pred             CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCC-----
Q 013823          207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDG-----  281 (436)
Q Consensus       207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~-----  281 (436)
                      ++.+|++|+|.++.|+++.+.+. ++..+..|.++|...++|+||+||||||||++|+++|++++.++.......     
T Consensus        11 ~~~~f~di~G~~~~~~~l~e~v~-~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~   89 (476)
T 2ce7_A           11 KRVTFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF   89 (476)
T ss_dssp             CCCCGGGCCSCHHHHHHHHHHHH-HHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred             CCCCHHHhCCcHHHHHHHHHHHH-HhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence            34689999999999999988765 677889999999999999999999999999999999999984332221110     


Q ss_pred             --------------------C-----C--------------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCC
Q 013823          282 --------------------A-----S--------------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERI  322 (436)
Q Consensus       282 --------------------~-----~--------------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~l  322 (436)
                                          +     +              .+.....+++.||..||++...  .+++||+|||+++.|
T Consensus        90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~--~~viVIaaTn~~~~L  167 (476)
T 2ce7_A           90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK--EGIIVMAATNRPDIL  167 (476)
T ss_dssp             TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG--GTEEEEEEESCGGGS
T ss_pred             hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC--CCEEEEEecCChhhh
Confidence                                0     0              0011124567788888877543  459999999999999


Q ss_pred             CccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          323 DPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       323 D~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      |++++||||||..|.++.|+.++|..|++.++......  ...++..++... +++++||...|.
T Consensus       168 d~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~--~~v~l~~la~~t~G~sgadL~~lv~  230 (476)
T 2ce7_A          168 DPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA--EDVNLEIIAKRTPGFVGADLENLVN  230 (476)
T ss_dssp             CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC--TTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred             chhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc--chhhHHHHHHhcCCCcHHHHHHHHH
Confidence            99999999999999999999999999999998754211  112244455544 589999988663

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.88  E-value=1e-22  Score=197.25  Aligned_cols=178  Identities=24%  Similarity=0.286  Sum_probs=136.3

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCC---
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDG---  281 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~---  281 (436)
                      ..++.+|++|+|.+++++.|.+.+..++..++.|...|...++++|||||||||||++|+++|+.++..+.......   
T Consensus        10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~   89 (285)
T 3h4m_A           10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK   89 (285)
T ss_dssp             SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred             CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence            45567899999999999999999999999999999999999999999999999999999999999983322111000   


Q ss_pred             ----------------------C-----C--------------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcC
Q 013823          282 ----------------------A-----S--------------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE  320 (436)
Q Consensus       282 ----------------------~-----~--------------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~  320 (436)
                                            +     +              ........+..+++.++++...  ..++||+|||.++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~--~~~~vI~ttn~~~  167 (285)
T 3h4m_A           90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR--GDVKIIGATNRPD  167 (285)
T ss_dssp             CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS--SSEEEEEECSCGG
T ss_pred             hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC--CCEEEEEeCCCch
Confidence                                  0     0              0011123444556666665443  4589999999999


Q ss_pred             CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      .+|++++|||||+..++++.|+.+++..|++.++....  .....++..++... ++++++|...+.
T Consensus       168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~--~~~~~~~~~l~~~~~g~~~~~i~~l~~  232 (285)
T 3h4m_A          168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN--LAEDVNLEEIAKMTEGCVGAELKAICT  232 (285)
T ss_dssp             GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHHCTTCCHHHHHHHHH
T ss_pred             hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCC--CCCcCCHHHHHHHcCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999987542  11222344454433 589999988664

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=99.88  E-value=7.8e-23  Score=202.82  Aligned_cols=176  Identities=19%  Similarity=0.206  Sum_probs=136.4

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh-cchhhcccCC----
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-SVEMKDRQND----  280 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~r~~~----  280 (436)
                      .++.+|++|+|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|+++ +..+......    
T Consensus         6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~   84 (322)
T 1xwi_A            6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS   84 (322)
T ss_dssp             CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred             CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence            34578999999999999999999999999988874 35667999999999999999999999998 5222111100    


Q ss_pred             ---------------------CC----------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCC
Q 013823          281 ---------------------GA----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERID  323 (436)
Q Consensus       281 ---------------------~~----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD  323 (436)
                                           .+                .........++.|+..+|++... ...++||+|||+++.||
T Consensus        85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~-~~~v~vI~atn~~~~ld  163 (322)
T 1xwi_A           85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWVLD  163 (322)
T ss_dssp             SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC-CTTEEEEEEESCTTTSC
T ss_pred             hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc-CCCEEEEEecCCcccCC
Confidence                                 00                00011223456678888887532 35699999999999999


Q ss_pred             ccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          324 PALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       324 ~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      ++++|  ||+..|+++.|+.++|..|++.++...+ ......++..++..+ ++++++|..+|.
T Consensus       164 ~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~-~~l~~~~l~~la~~t~G~sgadl~~l~~  224 (322)
T 1xwi_A          164 SAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQ-NSLTEADFRELGRKTDGYSGADISIIVR  224 (322)
T ss_dssp             HHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCC-BCCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred             HHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            99999  9999999999999999999999987652 222456777787765 599999998775

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=99.87  E-value=3.4e-22  Score=197.94  Aligned_cols=179  Identities=17%  Similarity=0.207  Sum_probs=139.0

Q ss_pred             cccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc----
Q 013823          203 INLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ----  278 (436)
Q Consensus       203 ~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~----  278 (436)
                      +...++.+|++|+|.+++|+.|.+.+..++..++.+.. +..+++|+|||||||||||++|+++|++++..+....    
T Consensus         9 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l   87 (322)
T 3eie_A            9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL   87 (322)
T ss_dssp             EEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred             eecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHH
Confidence            34566789999999999999999999999998888776 4566789999999999999999999999883221110    


Q ss_pred             ---------------------CCCC----------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823          279 ---------------------NDGA----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER  321 (436)
Q Consensus       279 ---------------------~~~~----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~  321 (436)
                                           ..++                ..........+.|+..++++... ...++||+|||+++.
T Consensus        88 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~atn~~~~  166 (322)
T 3eie_A           88 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIPWQ  166 (322)
T ss_dssp             HTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS-CCCEEEEEEESCGGG
T ss_pred             hhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc-CCceEEEEecCChhh
Confidence                                 0000                00112234456788888887532 346899999999999


Q ss_pred             CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      ||++++|  ||+..|+++.|+.++|..|++.++.... ......++..++..+ ++++++|..+|.
T Consensus       167 ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~-~~~~~~~l~~la~~t~g~sg~di~~l~~  229 (322)
T 3eie_A          167 LDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTP-CVLTKEDYRTLGAMTEGYSGSDIAVVVK  229 (322)
T ss_dssp             SCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCC-CCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred             CCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCC-CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            9999999  9999999999999999999999987652 223456777777765 499999988775

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=99.87  E-value=4.5e-22  Score=190.25  Aligned_cols=176  Identities=25%  Similarity=0.353  Sum_probs=126.2

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC---
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA---  282 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~---  282 (436)
                      .++.+|++|+|.+++|+.+.+.+. ++..++.|...|...++|+||+||||||||++|+++|++++.++........   
T Consensus         6 ~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~   84 (257)
T 1lv7_A            6 QIKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM   84 (257)
T ss_dssp             SSCCCGGGSCSCHHHHHHTHHHHH-HHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred             CCCCCHHHhcCcHHHHHHHHHHHH-HHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence            456789999999999999988665 5777888888899999999999999999999999999998833322211100   


Q ss_pred             ----------------------------------CC-------CCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823          283 ----------------------------------SV-------GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER  321 (436)
Q Consensus       283 ----------------------------------~~-------~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~  321 (436)
                                                        ..       .......++.++..+|++...  ..++||+|||+++.
T Consensus        85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~~vI~~tn~~~~  162 (257)
T 1lv7_A           85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN--EGIIVIAATNRPDV  162 (257)
T ss_dssp             CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS--SCEEEEEEESCTTT
T ss_pred             hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC--CCEEEEEeeCCchh
Confidence                                              00       000012345566677776543  45899999999999


Q ss_pred             CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      +|++++|||||+..|+++.|+.++|..|++.++....  .....++..++... +++++||...+.
T Consensus       163 l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~--l~~~~~~~~la~~~~G~~~~dl~~l~~  226 (257)
T 1lv7_A          163 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARGTPGFSGADLANLVN  226 (257)
T ss_dssp             SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred             CCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC--CCccccHHHHHHHcCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999986542  11112233344443 479999987664

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.86  E-value=1.1e-21  Score=188.45  Aligned_cols=177  Identities=27%  Similarity=0.376  Sum_probs=132.4

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCC----
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDG----  281 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~----  281 (436)
                      .++.+|++|+|.+++++.+.+.+. ++..++.|..+|...++|+|||||||||||++|+++|++++.++.......    
T Consensus         5 ~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~   83 (268)
T 2r62_A            5 KPNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM   83 (268)
T ss_dssp             CCCCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred             CCCCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence            345689999999999999988665 578889999999999999999999999999999999999884433221110    


Q ss_pred             ---------------------C-----CC---------------CCCcceeecceeecccCcccCCCCeEEEEEecCCcC
Q 013823          282 ---------------------A-----SV---------------GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE  320 (436)
Q Consensus       282 ---------------------~-----~~---------------~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~  320 (436)
                                           +     +.               .......++.|++.+++.... ...++||+|||.++
T Consensus        84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~ttn~~~  162 (268)
T 2r62_A           84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE-NAPVIVLAATNRPE  162 (268)
T ss_dssp             CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS-CSCCEEEECBSCCT
T ss_pred             hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC-CCCEEEEEecCCch
Confidence                                 0     00               001123456677777776432 34589999999999


Q ss_pred             CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      .+|++++|||||+..|+|+.|+.++|..+++.++.....  ....++..++... ++++++|...+.
T Consensus       163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~--~~~~~~~~la~~~~g~~g~dl~~l~~  227 (268)
T 2r62_A          163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKL--ANDVNLQEVAKLTAGLAGADLANIIN  227 (268)
T ss_dssp             TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCC--CSSCCTTTTTSSSCSSCHHHHHHHHH
T ss_pred             hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCC--CCccCHHHHHHHcCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999865421  1112234444433 488888877663

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=99.85  E-value=1.7e-21  Score=195.73  Aligned_cols=176  Identities=18%  Similarity=0.216  Sum_probs=134.2

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccC------
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN------  279 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~------  279 (436)
                      .++.+|++|+|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|++++..+.....      
T Consensus        45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~  123 (355)
T 2qp9_X           45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK  123 (355)
T ss_dssp             --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred             CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence            45678999999999999999999999998888876 56677899999999999999999999999833221100      


Q ss_pred             -------------------CCC-----CC-----------CCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc
Q 013823          280 -------------------DGA-----SV-----------GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP  324 (436)
Q Consensus       280 -------------------~~~-----~~-----------~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~  324 (436)
                                         ..+     +.           ........+.||..||++... ...++||+|||+++.||+
T Consensus       124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vI~atn~~~~ld~  202 (355)
T 2qp9_X          124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIPWQLDS  202 (355)
T ss_dssp             C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC----CCEEEEEEESCGGGSCH
T ss_pred             hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc-CCCeEEEeecCCcccCCH
Confidence                               000     00           011123456677778776432 345899999999999999


Q ss_pred             cccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          325 ALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       325 AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      +++|  ||+..|+++.|+.++|..|++.++...+ ......++..|+..+ ++++++|..+|.
T Consensus       203 al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~-~~~~~~~l~~la~~t~G~sg~dl~~l~~  262 (355)
T 2qp9_X          203 AIRR--RFERRIYIPLPDLAARTTMFEINVGDTP-SVLTKEDYRTLGAMTEGYSGSDIAVVVK  262 (355)
T ss_dssp             HHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSC-BCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            9999  9999999999999999999999997652 122355677777655 499999998775

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.85  E-value=5.3e-21  Score=182.46  Aligned_cols=176  Identities=26%  Similarity=0.361  Sum_probs=128.1

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc--------
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR--------  277 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r--------  277 (436)
                      .++.+|++++|.++.+..+.+.+. .+..+..+..++...++|++|+||||||||+|+++||+.++......        
T Consensus        10 ~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~   88 (254)
T 1ixz_A           10 APKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM   88 (254)
T ss_dssp             CCSCCGGGCCSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred             CCCCCHHHhCCcHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence            445699999999999999987655 45677889999999999999999999999999999999876211100        


Q ss_pred             ---------------c--CCCC-----CC--------------CCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823          278 ---------------Q--NDGA-----SV--------------GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER  321 (436)
Q Consensus       278 ---------------~--~~~~-----~~--------------~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~  321 (436)
                                     .  ...+     +.              .......++.+++.++|....  ..++++++||+|+.
T Consensus        89 ~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~--~~~i~~a~t~~p~~  166 (254)
T 1ixz_A           89 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD--TAIVVMAATNRPDI  166 (254)
T ss_dssp             CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT--CCEEEEEEESCGGG
T ss_pred             HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC--CCEEEEEccCCchh
Confidence                           0  0000     00              000112345667777766542  34788999999999


Q ss_pred             CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      ||++++||||||..|+++.|+.++|..|++.+.....  .....++..++... +++++||...+.
T Consensus       167 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~--~~~~~~~~~la~~~~G~~~~dl~~~~~  230 (254)
T 1ixz_A          167 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP--LAEDVDLALLAKRTPGFVGADLENLLN  230 (254)
T ss_dssp             SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred             CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCC--CCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence            9999999999999999999999999999998875431  11122244455544 588889887664

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.85  E-value=2.4e-21  Score=200.26  Aligned_cols=177  Identities=19%  Similarity=0.202  Sum_probs=135.6

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh-cchhhcccCC---
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-SVEMKDRQND---  280 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~r~~~---  280 (436)
                      ..++.+|++|+|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|+++ +..+......   
T Consensus       127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~  205 (444)
T 2zan_A          127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV  205 (444)
T ss_dssp             CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred             cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence            345679999999999999999999999988887764 34567999999999999999999999998 5222111100   


Q ss_pred             ----------------------CC-----C-----------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCC
Q 013823          281 ----------------------GA-----S-----------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERI  322 (436)
Q Consensus       281 ----------------------~~-----~-----------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~l  322 (436)
                                            .+     +           .........+.||..||++... ...++||+|||+++.|
T Consensus       206 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-~~~v~vI~atn~~~~l  284 (444)
T 2zan_A          206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWVL  284 (444)
T ss_dssp             ------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCC-CSSCEEEEEESCGGGS
T ss_pred             hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccC-CCCEEEEecCCCcccc
Confidence                                  00     0           0011234556788888887532 3569999999999999


Q ss_pred             CccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          323 DPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       323 D~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      |++++|  ||+..|+++.|+.++|..|++.++...+ ......++..|+..+ ++++++|..+|.
T Consensus       285 d~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~-~~l~~~~l~~la~~t~G~sgadl~~l~~  346 (444)
T 2zan_A          285 DSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQ-NSLTEADFQELGRKTDGYSGADISIIVR  346 (444)
T ss_dssp             CHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSC-EECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             CHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            999999  9999999999999999999999987642 122346677777655 599999998775

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.84  E-value=4.8e-21  Score=199.95  Aligned_cols=175  Identities=26%  Similarity=0.362  Sum_probs=131.6

Q ss_pred             CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccC-------
Q 013823          207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN-------  279 (436)
Q Consensus       207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~-------  279 (436)
                      ++.+|++|+|.++.|+.+.+.+. ++..+..|..+|...++|+||+||||||||+|+++||++++..+.....       
T Consensus        26 ~~~~f~dv~G~~~~k~~l~~lv~-~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~  104 (499)
T 2dhr_A           26 PKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF  104 (499)
T ss_dssp             CCCCTTSSCSCHHHHHHHHHHHH-HHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred             CCCCHHHcCCcHHHHHHHHHHHH-HhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence            56799999999999999988655 6777888999999999999999999999999999999998722211100       


Q ss_pred             ------------------CCC-----CC--------------CCCcceeecceeecccCcccCCCCeEEEEEecCCcCCC
Q 013823          280 ------------------DGA-----SV--------------GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERI  322 (436)
Q Consensus       280 ------------------~~~-----~~--------------~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~l  322 (436)
                                        .++     +.              ......+++.||..|||....  ..++++++||+|+.|
T Consensus       105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~--~~viviAatn~p~~L  182 (499)
T 2dhr_A          105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD--TAIVVMAATNRPDIL  182 (499)
T ss_dssp             TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS--CCCEEEECCSCGGGS
T ss_pred             hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC--ccEEEEEecCChhhc
Confidence                              000     00              000123456778888877543  448999999999999


Q ss_pred             CccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          323 DPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       323 D~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      |++++||||||.+|+++.|+.++|..|++.++....  .....++..++... +++++||.+.+.
T Consensus       183 D~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~--l~~dv~l~~lA~~t~G~~gadL~~lv~  245 (499)
T 2dhr_A          183 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP--LAEDVDLALLAKRTPGFVGADLENLLN  245 (499)
T ss_dssp             CTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSC--CCCSSTTHHHHTTSCSCCHHHHHHHHH
T ss_pred             CcccccccccceEEecCCCCHHHHHHHHHHHHhcCC--CChHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            999999999999999999999999999998875431  11122234445443 589999988763

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=99.84  E-value=6e-21  Score=199.27  Aligned_cols=176  Identities=24%  Similarity=0.294  Sum_probs=137.6

Q ss_pred             CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccC-------
Q 013823          207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN-------  279 (436)
Q Consensus       207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~-------  279 (436)
                      .+.+|++|+|.+..++.|.+.+..++..++.|..+|.+.++++|||||||||||++|+++|++++..+.....       
T Consensus       199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~  278 (489)
T 3hu3_A          199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL  278 (489)
T ss_dssp             TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred             CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence            4568999999999999999999999999999999999999999999999999999999999998833221110       


Q ss_pred             ------------------CCC----------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCcc
Q 013823          280 ------------------DGA----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPA  325 (436)
Q Consensus       280 ------------------~~~----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~A  325 (436)
                                        .++                ..+.......+.||..|+++...  ..++||+|||+++.||++
T Consensus       279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~--~~v~vIaaTn~~~~Ld~a  356 (489)
T 3hu3_A          279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPA  356 (489)
T ss_dssp             TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTT--SCEEEEEEESCGGGBCGG
T ss_pred             cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccC--CceEEEEecCCccccCHH
Confidence                              000                00111224556678888876543  459999999999999999


Q ss_pred             ccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhc-CCCCHHHHHHHHh
Q 013823          326 LLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM  386 (436)
Q Consensus       326 llRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~-~~~tpaei~~~l~  386 (436)
                      ++|||||+..|+++.|+.++|..|++.++....  .....++..++.. .+++++++...+.
T Consensus       357 l~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~--l~~~~~l~~la~~t~g~s~~dL~~L~~  416 (489)
T 3hu3_A          357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVANETHGHVGADLAALCS  416 (489)
T ss_dssp             GGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred             HhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC--CcchhhHHHHHHHccCCcHHHHHHHHH
Confidence            999999999999999999999999999986542  1122234455544 3599999987664

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=99.81  E-value=4.1e-20  Score=187.62  Aligned_cols=180  Identities=23%  Similarity=0.264  Sum_probs=134.3

Q ss_pred             cccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC
Q 013823          203 INLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA  282 (436)
Q Consensus       203 ~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~  282 (436)
                      +...+|.+|++|+|.+.+++.|.+.+..++..++.|...+ ..++++|||||||||||++|++||++++..+........
T Consensus       106 ~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l  184 (389)
T 3vfd_A          106 VDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASL  184 (389)
T ss_dssp             BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC
T ss_pred             hccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHh
Confidence            4456788999999999999999999999988888887776 346899999999999999999999999855443322211


Q ss_pred             CC-----------------------------------------CCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823          283 SV-----------------------------------------GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER  321 (436)
Q Consensus       283 ~~-----------------------------------------~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~  321 (436)
                      ..                                         ..........|+..++++.......++||+|||+++.
T Consensus       185 ~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~  264 (389)
T 3vfd_A          185 TSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQE  264 (389)
T ss_dssp             -------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGG
T ss_pred             hccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchh
Confidence            00                                         0011223334555556554433456899999999999


Q ss_pred             CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      ||++++|  ||+.+|+++.|+.++|..|+..++...+ .......+..++... ++++++|..++.
T Consensus       265 l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~-~~l~~~~~~~la~~~~g~~~~~l~~L~~  327 (389)
T 3vfd_A          265 LDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQG-SPLTQKELAQLARMTDGYSGSDLTALAK  327 (389)
T ss_dssp             CCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSC-CCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             cCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            9999999  9999999999999999999999987653 233445666776654 589988877663

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.81  E-value=1e-19  Score=176.12  Aligned_cols=177  Identities=26%  Similarity=0.357  Sum_probs=127.5

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc-------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR-------  277 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r-------  277 (436)
                      ..++.+|++++|.+++++.+.+.+. .+..+..+..++...++|++|+||||||||+|+++||+.++......       
T Consensus        33 ~~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~  111 (278)
T 1iy2_A           33 EAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE  111 (278)
T ss_dssp             CCCCCCGGGSSSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             CCCCCCHHHhCChHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence            3466799999999999999987655 55677889999999999999999999999999999999876111100       


Q ss_pred             ------------------cCCCC-----CC--------------CCCcceeecceeecccCcccCCCCeEEEEEecCCcC
Q 013823          278 ------------------QNDGA-----SV--------------GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE  320 (436)
Q Consensus       278 ------------------~~~~~-----~~--------------~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~  320 (436)
                                        .....     +.              .......+..+++.+++....  ..++++++||+|+
T Consensus       112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~--~~~i~~a~t~~p~  189 (278)
T 1iy2_A          112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD--TAIVVMAATNRPD  189 (278)
T ss_dssp             STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT--CCEEEEEEESCTT
T ss_pred             HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC--CCEEEEEecCCch
Confidence                              00000     00              000122344566667765432  3478899999999


Q ss_pred             CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      .||++++|||||+.+|+|+.|+.++|..|++.++....  .....++..++... +++++||...+.
T Consensus       190 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~--~~~~~~~~~la~~~~G~~~~dl~~l~~  254 (278)
T 1iy2_A          190 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP--LAEDVDLALLAKRTPGFVGADLENLLN  254 (278)
T ss_dssp             SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred             hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCC--CCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence            99999999999999999999999999999998875431  11112234444443 588888877664

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=99.81  E-value=4e-20  Score=185.73  Aligned_cols=177  Identities=20%  Similarity=0.245  Sum_probs=132.9

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC---
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA---  282 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~---  282 (436)
                      .++.+|++|+|.+++++.|.+.+..++..++.|...+ ..++++||+||||||||++|+++|++++..+........   
T Consensus        78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~  156 (357)
T 3d8b_A           78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK  156 (357)
T ss_dssp             SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred             CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence            3567899999999999999999998888888777665 567899999999999999999999999843322111100   


Q ss_pred             --------------------------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc
Q 013823          283 --------------------------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP  324 (436)
Q Consensus       283 --------------------------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~  324 (436)
                                                            ..........+.||..+++........++||+|||.++.||+
T Consensus       157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~  236 (357)
T 3d8b_A          157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDE  236 (357)
T ss_dssp             STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCH
T ss_pred             ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCH
Confidence                                                  000112233456777777775444566899999999999999


Q ss_pred             cccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          325 ALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       325 AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      +++|  ||+..++++.|+.++|..++..++...+ .......+..++..+ ++++++|...|.
T Consensus       237 ~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~-~~l~~~~l~~la~~t~G~s~~dl~~l~~  296 (357)
T 3d8b_A          237 AARR--RLVKRLYIPLPEASARKQIVINLMSKEQ-CCLSEEEIEQIVQQSDAFSGADMTQLCR  296 (357)
T ss_dssp             HHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSC-BCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcC-CCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            9999  9999999999999999999999886542 223345667777655 589999988764

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=99.80  E-value=7.3e-20  Score=178.28  Aligned_cols=177  Identities=23%  Similarity=0.266  Sum_probs=129.4

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCC--
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGAS--  283 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~--  283 (436)
                      .++.+|++|+|.+++++.|.+.+..++..++.|...+ .+++++||+||||||||++|+++|++++..+.........  
T Consensus        15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~   93 (297)
T 3b9p_A           15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK   93 (297)
T ss_dssp             SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred             CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence            4577999999999999999999998888888777665 4568999999999999999999999998443322211100  


Q ss_pred             ----------------------------C-----------CCCcceeecceeecccCcccC-CCCeEEEEEecCCcCCCC
Q 013823          284 ----------------------------V-----------GSNTKLTLSGILNFIDGLWSS-CGDERIIVFTTNHKERID  323 (436)
Q Consensus       284 ----------------------------~-----------~~~~~~~~s~LL~~ldg~~~~-~~~~~ivI~TTN~~~~lD  323 (436)
                                                  .           ........+.|+..+|+.... .+..++||+|||+++.+|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~  173 (297)
T 3b9p_A           94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELD  173 (297)
T ss_dssp             SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBC
T ss_pred             ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCC
Confidence                                        0           000112233455566655432 124589999999999999


Q ss_pred             ccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          324 PALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       324 ~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      ++++|  ||+..++++.|+.++|..|++.++...+ .......+..++..+ +++++++...+.
T Consensus       174 ~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~-~~~~~~~~~~la~~~~g~~~~~l~~l~~  234 (297)
T 3b9p_A          174 EAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQG-SPLDTEALRRLAKITDGYSGSDLTALAK  234 (297)
T ss_dssp             HHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGS-CCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            99999  9999999999999999999999987653 223345566666544 589999877664

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=99.73  E-value=3e-18  Score=167.57  Aligned_cols=128  Identities=14%  Similarity=0.126  Sum_probs=88.2

Q ss_pred             HhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc-----------------------------cCCCC-----CC-
Q 013823          240 RVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR-----------------------------QNDGA-----SV-  284 (436)
Q Consensus       240 ~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r-----------------------------~~~~~-----~~-  284 (436)
                      ..+..+|+|+|||||||||||++|++||++++..+...                             ...++     +. 
T Consensus        30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD  109 (293)
T 3t15_A           30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD  109 (293)
T ss_dssp             CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred             cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence            34677889999999999999999999999998322111                             00111     00 


Q ss_pred             ------CC------CcceeecceeecccCccc---------CCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCH
Q 013823          285 ------GS------NTKLTLSGILNFIDGLWS---------SCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTV  343 (436)
Q Consensus       285 ------~~------~~~~~~s~LL~~ldg~~~---------~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~  343 (436)
                            ++      ..+...+.|++.||+...         ....+++||+|||+++.||+|++||||||.+|++  |+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~~  187 (293)
T 3t15_A          110 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR  187 (293)
T ss_dssp             --------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CCH
T ss_pred             hhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cCH
Confidence                  00      111344778888875431         1224589999999999999999999999999984  699


Q ss_pred             HHHHHHHHHHhcccCCCCCcHHHHHhhhh
Q 013823          344 HGFKVLASNYLGIKGKSHSLFGEIEGLIQ  372 (436)
Q Consensus       344 ~~r~~i~~~~l~~~~~~~~~~~~i~~l~~  372 (436)
                      ++|..|++.++...   ......++.+..
T Consensus       188 ~~r~~Il~~~~~~~---~~~~~~l~~~~~  213 (293)
T 3t15_A          188 EDRIGVCTGIFRTD---NVPAEDVVKIVD  213 (293)
T ss_dssp             HHHHHHHHHHHGGG---CCCHHHHHHHHH
T ss_pred             HHHHHHHHHhccCC---CCCHHHHHHHhC
Confidence            99999999988643   233555555554

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=99.69  E-value=1.1e-17  Score=171.78  Aligned_cols=134  Identities=13%  Similarity=0.151  Sum_probs=51.5

Q ss_pred             ccccChhHHHHHHHHHHHHHhhHHHHHHhCC-CCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCC----------
Q 013823          213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGK-AWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDG----------  281 (436)
Q Consensus       213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~-~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~----------  281 (436)
                      +|+|+++.|+.|...+..+..+...+...+. .+++++||+||||||||++|+++|+.++..+.......          
T Consensus        16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d   95 (444)
T 1g41_A           16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE   95 (444)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred             HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence            6899999999998888776655544444333 35689999999999999999999999995443221100          


Q ss_pred             C--------------------------CCCCCcceeecceeecccCcccCCCCeEEEEEe-cCCcCCCCccccCCCceeE
Q 013823          282 A--------------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFT-TNHKERIDPALLRPGRMDV  334 (436)
Q Consensus       282 ~--------------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~T-TN~~~~lD~AllRpGR~d~  334 (436)
                      .                          ..+....++++.||+.|||+.+..   .+ +++ ||+++.||+||+||||||+
T Consensus        96 ~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~---~v-~a~~TN~~~~ld~aL~rggr~D~  171 (444)
T 1g41_A           96 VDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEV---EN-HDSHSSTRQAFRKKLREGQLDDK  171 (444)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHSCC-------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhcccccc---cc-ccccccCHHHHHHHHHcCCCcce
Confidence            0                          112245678899999999997542   22 454 9999999999999999999


Q ss_pred             EEEcCCCCHH-HHHHHH
Q 013823          335 HINMSYCTVH-GFKVLA  350 (436)
Q Consensus       335 ~I~~~~p~~~-~r~~i~  350 (436)
                      +|+++.|+.. .+..|+
T Consensus       172 ~i~i~lP~~~~~~~ei~  188 (444)
T 1g41_A          172 EIEIDVSAGVSMGVEIM  188 (444)
T ss_dssp             -----------------
T ss_pred             EEEEcCCCCccchhhhh
Confidence            9999999987 555554

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=99.58  E-value=8.4e-16  Score=159.17  Aligned_cols=130  Identities=19%  Similarity=0.186  Sum_probs=86.2

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc--chhhcccCCCC-
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS--VEMKDRQNDGA-  282 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~--~~~~~r~~~~~-  282 (436)
                      .+...|++++|.+++|+.+...+...        ..|..+++++|||||||||||++|+++|++++  ..+........ 
T Consensus        31 ~~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~  102 (456)
T 2c9o_A           31 LAKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY  102 (456)
T ss_dssp             CBCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred             ChhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence            33456899999999999988766532        23666779999999999999999999999998  32221110000 


Q ss_pred             ----------------------------------------------CCCCCcceeecceee------------cccCcc-
Q 013823          283 ----------------------------------------------SVGSNTKLTLSGILN------------FIDGLW-  303 (436)
Q Consensus       283 ----------------------------------------------~~~~~~~~~~s~LL~------------~ldg~~-  303 (436)
                                                                    ..+......+.+|+.            .+|++. 
T Consensus       103 ~~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~  182 (456)
T 2c9o_A          103 STEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK  182 (456)
T ss_dssp             CSSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred             HHhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence                                                          000111222333333            444332 


Q ss_pred             --cCCCCeEEEEEecCCcCCCCccccCCCceeE--EEEcCCCCH
Q 013823          304 --SSCGDERIIVFTTNHKERIDPALLRPGRMDV--HINMSYCTV  343 (436)
Q Consensus       304 --~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~--~I~~~~p~~  343 (436)
                        ...++.++|++|||+++.+|+++.||||||.  .+.+|.|+.
T Consensus       183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~  226 (456)
T 2c9o_A          183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKG  226 (456)
T ss_dssp             TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred             ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCch
Confidence              1234456666899999999999999999999  566677754

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=99.54  E-value=2.5e-14  Score=141.57  Aligned_cols=174  Identities=11%  Similarity=0.093  Sum_probs=111.4

Q ss_pred             CccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc
Q 013823          199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ  278 (436)
Q Consensus       199 ~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~  278 (436)
                      .|..  .-.|.+|++++|.+..++.+...+.....        +.....++||+||||||||++|+++|+.++..+....
T Consensus        18 ~~~~--~~~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~   87 (338)
T 3pfi_A           18 TYET--SLRPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTA   87 (338)
T ss_dssp             -------CCCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             hhhh--ccCCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence            4553  45677999999999999999887764332        1234568999999999999999999999985443222


Q ss_pred             CCCC----------------------CCCCCcceeecceeecccCccc--------------CCCCeEEEEEecCCcCCC
Q 013823          279 NDGA----------------------SVGSNTKLTLSGILNFIDGLWS--------------SCGDERIIVFTTNHKERI  322 (436)
Q Consensus       279 ~~~~----------------------~~~~~~~~~~s~LL~~ldg~~~--------------~~~~~~ivI~TTN~~~~l  322 (436)
                      ....                      +.+.........|+..++...-              ..-..+++|++||+...+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l  167 (338)
T 3pfi_A           88 APMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGML  167 (338)
T ss_dssp             GGGCCSHHHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGS
T ss_pred             chhccchhHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCcccc
Confidence            1111                      0001111122223333332210              000137899999999999


Q ss_pred             CccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHHHHHHH
Q 013823          323 DPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEEL  385 (436)
Q Consensus       323 D~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpaei~~~l  385 (436)
                      +++|++  ||+..|+|+.|+.+++..++..++...+ .....+.+..++....-.+.++.+.+
T Consensus       168 ~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l  227 (338)
T 3pfi_A          168 SNPLRD--RFGMQFRLEFYKDSELALILQKAALKLN-KTCEEKAALEIAKRSRSTPRIALRLL  227 (338)
T ss_dssp             CHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTT-CEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred             CHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence            999999  9999999999999999999998876542 12223344555554445555554433

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=99.51  E-value=1.8e-14  Score=140.58  Aligned_cols=140  Identities=19%  Similarity=0.282  Sum_probs=97.7

Q ss_pred             Cc-ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCc---ceeeEeCCCCCChhHHHHHHHHHhcc-------hhhcccC
Q 013823          211 FD-TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWK---RGYLLYGPPGTGKSSLIAAMANYLSV-------EMKDRQN  279 (436)
Q Consensus       211 ~~-~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~---rg~LL~GPpGtGKT~la~aiA~~l~~-------~~~~r~~  279 (436)
                      ++ +|+|.+++|+.|.+.+..+. .+..+.+.|+..+   .++||+||||||||++|+++|+.++.       .+.....
T Consensus        29 l~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~  107 (309)
T 3syl_A           29 LDRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR  107 (309)
T ss_dssp             HHHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred             HHHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence            55 79999999999999887655 4666777776554   35999999999999999999999852       1111110


Q ss_pred             CCC---CCC---------------------------------CCcceeecceeecccCcccCCCCeEEEEEecCCcC---
Q 013823          280 DGA---SVG---------------------------------SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE---  320 (436)
Q Consensus       280 ~~~---~~~---------------------------------~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~---  320 (436)
                      ...   ..+                                 .......+.|++.++..    ..++++|+|||.++   
T Consensus       108 ~~l~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~----~~~~~~i~~~~~~~~~~  183 (309)
T 3syl_A          108 DDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN----RDDLVVILAGYADRMEN  183 (309)
T ss_dssp             GGTCCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC----TTTCEEEEEECHHHHHH
T ss_pred             HHhhhhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC----CCCEEEEEeCChHHHHH
Confidence            000   000                                 00112223344444332    23478889998654   


Q ss_pred             --CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          321 --RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       321 --~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                        .++|+|++  ||+.+|+|+.|+.+++..|+.+++...
T Consensus       184 ~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~  220 (309)
T 3syl_A          184 FFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQ  220 (309)
T ss_dssp             HHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred             HHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHc
Confidence              36899999  999999999999999999999998754

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=99.48  E-value=2.5e-13  Score=133.15  Aligned_cols=169  Identities=18%  Similarity=0.170  Sum_probs=110.8

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC---
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA---  282 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~---  282 (436)
                      -.|.+|++++|.+..++.+.+.+......        ...+.++||+||||||||++|+++|+.++..+........   
T Consensus         6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~   77 (324)
T 1hqc_A            6 LRPKTLDEYIGQERLKQKLRVYLEAAKAR--------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP   77 (324)
T ss_dssp             CCCCSTTTCCSCHHHHHHHHHHHHHHHHH--------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH
T ss_pred             cCcccHHHhhCHHHHHHHHHHHHHHHHcc--------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh
Confidence            45678999999999999888776643211        1245789999999999999999999998844322211110   


Q ss_pred             --------------------CCCCCcceeecceeecccCcc-----cC---------CCCeEEEEEecCCcCCCCccccC
Q 013823          283 --------------------SVGSNTKLTLSGILNFIDGLW-----SS---------CGDERIIVFTTNHKERIDPALLR  328 (436)
Q Consensus       283 --------------------~~~~~~~~~~s~LL~~ldg~~-----~~---------~~~~~ivI~TTN~~~~lD~AllR  328 (436)
                                          +.+.........|+..++...     ..         ....+++|+|||.+..+++++.+
T Consensus        78 ~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~  157 (324)
T 1hqc_A           78 GDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS  157 (324)
T ss_dssp             HHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT
T ss_pred             HHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh
Confidence                                000011111122333332211     00         00236899999999999999999


Q ss_pred             CCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHHHHHHH
Q 013823          329 PGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEEL  385 (436)
Q Consensus       329 pGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpaei~~~l  385 (436)
                        ||+.++.++.|+.+++..++..++...+ .....+.+..++....-.|.++.+.+
T Consensus       158 --R~~~~i~l~~~~~~e~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l  211 (324)
T 1hqc_A          158 --RFGIVEHLEYYTPEELAQGVMRDARLLG-VRITEEAALEIGRRSRGTMRVAKRLF  211 (324)
T ss_dssp             --TCSCEEECCCCCHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHSCSCHHHHHHHH
T ss_pred             --cccEEEecCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHccCCHHHHHHHH
Confidence              9999999999999999999999886543 22334445555555555666666554

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=99.39  E-value=4.2e-13  Score=131.99  Aligned_cols=139  Identities=17%  Similarity=0.115  Sum_probs=93.7

Q ss_pred             CccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc
Q 013823          199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ  278 (436)
Q Consensus       199 ~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~  278 (436)
                      .|..  ...|.+|++++|.++.++.+.+.+.            ....+..+|++||||||||++|+++|++++.++....
T Consensus        15 ~~~~--k~rP~~~~~ivg~~~~~~~l~~~l~------------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~   80 (324)
T 3u61_B           15 ILEQ--KYRPSTIDECILPAFDKETFKSITS------------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN   80 (324)
T ss_dssp             SHHH--HSCCCSTTTSCCCHHHHHHHHHHHH------------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred             hHHH--hhCCCCHHHHhCcHHHHHHHHHHHH------------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence            4543  5678999999999999988877655            1234567899999999999999999999985444332


Q ss_pred             CCCCCCC-------------CCcceeecceeecccCcc-c-----------CCCCeEEEEEecCCcCCCCccccCCCcee
Q 013823          279 NDGASVG-------------SNTKLTLSGILNFIDGLW-S-----------SCGDERIIVFTTNHKERIDPALLRPGRMD  333 (436)
Q Consensus       279 ~~~~~~~-------------~~~~~~~s~LL~~ldg~~-~-----------~~~~~~ivI~TTN~~~~lD~AllRpGR~d  333 (436)
                      .......             .......--+++.+|.+. .           .....+.+|+|||.+..+++++.+  |+.
T Consensus        81 ~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s--R~~  158 (324)
T 3u61_B           81 GSDCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS--RCR  158 (324)
T ss_dssp             TTTCCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH--HSE
T ss_pred             ccccCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh--hCc
Confidence            2211000             000000011233333332 0           001347889999999999999999  995


Q ss_pred             EEEEcCCCCHHHHHHHHHHHh
Q 013823          334 VHINMSYCTVHGFKVLASNYL  354 (436)
Q Consensus       334 ~~I~~~~p~~~~r~~i~~~~l  354 (436)
                       .++|+.|+.+++..++..++
T Consensus       159 -~i~~~~~~~~e~~~il~~~~  178 (324)
T 3u61_B          159 -VITFGQPTDEDKIEMMKQMI  178 (324)
T ss_dssp             -EEECCCCCHHHHHHHHHHHH
T ss_pred             -EEEeCCCCHHHHHHHHHHHH
Confidence             69999999999877766654

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.37  E-value=1.7e-12  Score=118.68  Aligned_cols=137  Identities=19%  Similarity=0.141  Sum_probs=88.8

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch-----hhcccC
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE-----MKDRQN  279 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~-----~~~r~~  279 (436)
                      ...|..|++++|.++.++.+.+.+..             ....++||+||||||||++++++++.+...     +.....
T Consensus        10 ~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~   76 (226)
T 2chg_A           10 KYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA   76 (226)
T ss_dssp             HTSCSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET
T ss_pred             hcCCCCHHHHcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc
Confidence            45678999999999998888776541             122359999999999999999999986311     111111


Q ss_pred             CCCCC---------------CCCcceeecceeecccCcc-----------cCCCCeEEEEEecCCcCCCCccccCCCcee
Q 013823          280 DGASV---------------GSNTKLTLSGILNFIDGLW-----------SSCGDERIIVFTTNHKERIDPALLRPGRMD  333 (436)
Q Consensus       280 ~~~~~---------------~~~~~~~~s~LL~~ldg~~-----------~~~~~~~ivI~TTN~~~~lD~AllRpGR~d  333 (436)
                      .....               ........--+++.++.+.           ........+|+|||.++.+++++.+  |+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~--r~~  154 (226)
T 2chg_A           77 SDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS--RCA  154 (226)
T ss_dssp             TCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT--TSE
T ss_pred             ccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHH--hCc
Confidence            00000               0000000001122222110           1112347889999999999999999  997


Q ss_pred             EEEEcCCCCHHHHHHHHHHHhccc
Q 013823          334 VHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       334 ~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                       .++++.|+.++...++..++...
T Consensus       155 -~i~~~~~~~~~~~~~l~~~~~~~  177 (226)
T 2chg_A          155 -VFRFKPVPKEAMKKRLLEICEKE  177 (226)
T ss_dssp             -EEECCCCCHHHHHHHHHHHHHHH
T ss_pred             -eeecCCCCHHHHHHHHHHHHHHc
Confidence             89999999999999988877543

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=99.34  E-value=1.8e-12  Score=137.02  Aligned_cols=133  Identities=23%  Similarity=0.189  Sum_probs=89.3

Q ss_pred             CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCC-CcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC-------
Q 013823          211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA-WKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA-------  282 (436)
Q Consensus       211 ~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~-~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~-------  282 (436)
                      .++++|.+++++.+.+.+....        +... .+..+||+||||||||++|++||+.++..+......+.       
T Consensus        80 ~~di~G~~~vk~~i~~~~~l~~--------~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~  151 (543)
T 3m6a_A           80 DEEHHGLEKVKERILEYLAVQK--------LTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR  151 (543)
T ss_dssp             HHHCSSCHHHHHHHHHHHHHHH--------HSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------
T ss_pred             HHHhccHHHHHHHHHHHHHHHH--------hcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhh
Confidence            4568999999999877554221        1111 34579999999999999999999998733221111000       


Q ss_pred             -------------------------------CCCC----CcceeecceeecccCcccC-----------CCCeEEEEEec
Q 013823          283 -------------------------------SVGS----NTKLTLSGILNFIDGLWSS-----------CGDERIIVFTT  316 (436)
Q Consensus       283 -------------------------------~~~~----~~~~~~s~LL~~ldg~~~~-----------~~~~~ivI~TT  316 (436)
                                                     +.+.    ......+.||..||.....           .-.+++||+||
T Consensus       152 g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~tt  231 (543)
T 3m6a_A          152 GHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATA  231 (543)
T ss_dssp             ------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEEC
T ss_pred             hHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEecc
Confidence                                           0000    0011335566666543210           00357899999


Q ss_pred             CCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHh
Q 013823          317 NHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL  354 (436)
Q Consensus       317 N~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l  354 (436)
                      |.++.+||+|++  ||+ .|+|+.|+.+++..|+..++
T Consensus       232 N~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l  266 (543)
T 3m6a_A          232 NNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL  266 (543)
T ss_dssp             SSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred             CccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence            999999999999  996 68999999999999999887

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=99.33  E-value=2.1e-12  Score=128.90  Aligned_cols=55  Identities=27%  Similarity=0.340  Sum_probs=44.1

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+|++++|.+..++.+...+...        ..|..+++++||+||||||||++|+++|+.++
T Consensus        41 ~~~~~ivG~~~~~~~l~~l~~~~--------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           41 QASQGMVGQLAARRAAGVVLEMI--------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             SEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             cchhhccChHHHHHHHHHHHHHH--------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            44999999999998875544322        12445568999999999999999999999987

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=99.32  E-value=9.4e-12  Score=120.74  Aligned_cols=139  Identities=14%  Similarity=0.250  Sum_probs=87.5

Q ss_pred             ccccChhHHHHHHHHHHHHHhhHHHHHHh-CCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCC----C--
Q 013823          213 TLAMDPELKQMILDDLDRFLRRKEFYRRV-GKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASV----G--  285 (436)
Q Consensus       213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~-g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~----~--  285 (436)
                      +|+|.++.++.|...+............. +...+.++||+||||||||++|+++|+.++..+..........    +  
T Consensus        16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~   95 (310)
T 1ofh_A           16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE   95 (310)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred             hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence            58999999999988776543221111000 1134578999999999999999999999984332211110000    0  


Q ss_pred             -------------------------------CCcce------------eecceeecccCccc------CCCCeEEEEEe-
Q 013823          286 -------------------------------SNTKL------------TLSGILNFIDGLWS------SCGDERIIVFT-  315 (436)
Q Consensus       286 -------------------------------~~~~~------------~~s~LL~~ldg~~~------~~~~~~ivI~T-  315 (436)
                                                     .....            ..+.|+..+++...      .....+++|+| 
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~  175 (310)
T 1ofh_A           96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG  175 (310)
T ss_dssp             TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE
T ss_pred             HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcC
Confidence                                           00000            01223333333210      00124677887 


Q ss_pred             ---cCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHH
Q 013823          316 ---TNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNY  353 (436)
Q Consensus       316 ---TN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~  353 (436)
                         ++.+..+++++++  ||+.+|+|+.|+.+++..|+++.
T Consensus       176 ~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~  214 (310)
T 1ofh_A          176 AFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEP  214 (310)
T ss_dssp             CCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSS
T ss_pred             CcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhh
Confidence               5688899999998  99999999999999999999853

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.32  E-value=5.9e-12  Score=116.30  Aligned_cols=138  Identities=16%  Similarity=0.224  Sum_probs=89.9

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh---------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK---------  275 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~---------  275 (436)
                      ...|..|++++|.++.++.|.+.+..           + ..++.++|+||||||||++++++++.++....         
T Consensus        16 ~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~   83 (250)
T 1njg_A           16 KWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC   83 (250)
T ss_dssp             HTCCCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCS
T ss_pred             ccCCccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence            45678899999999999888776541           1 22357999999999999999999998753110         


Q ss_pred             ---------------cccCCCC-----------CCC--CCcceeecceeecccCcc-----------cCCCCeEEEEEec
Q 013823          276 ---------------DRQNDGA-----------SVG--SNTKLTLSGILNFIDGLW-----------SSCGDERIIVFTT  316 (436)
Q Consensus       276 ---------------~r~~~~~-----------~~~--~~~~~~~s~LL~~ldg~~-----------~~~~~~~ivI~TT  316 (436)
                                     .......           ...  .......--+++.+|.+.           ......+.+|+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t  163 (250)
T 1njg_A           84 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT  163 (250)
T ss_dssp             HHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEE
T ss_pred             HHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEe
Confidence                           0000000           000  000000001122222110           1112458899999


Q ss_pred             CCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          317 NHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       317 N~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      |.+..+++++.+  |+ ..|+++.++.++...++..++...
T Consensus       164 ~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~  201 (250)
T 1njg_A          164 TDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEE  201 (250)
T ss_dssp             SCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHT
T ss_pred             CChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhc
Confidence            999999999998  76 789999999999999999887543

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=99.30  E-value=1e-11  Score=120.80  Aligned_cols=133  Identities=17%  Similarity=0.174  Sum_probs=89.6

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc-----chhhcccC
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS-----VEMKDRQN  279 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~-----~~~~~r~~  279 (436)
                      ...|.+|++++|.++.++.+...+..           |  ...++|||||||||||++|+++|+.+.     ..+.....
T Consensus        10 k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~   76 (319)
T 2chq_A           10 KYRPRTLDEVVGQDEVIQRLKGYVER-----------K--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA   76 (319)
T ss_dssp             TTSCSSGGGSCSCHHHHHHHHTTTTT-----------T--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred             hcCCCCHHHHhCCHHHHHHHHHHHhC-----------C--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence            56788999999999998887665431           1  112499999999999999999999862     11111111


Q ss_pred             CCC-CCC-----------------C------------CcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCC
Q 013823          280 DGA-SVG-----------------S------------NTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRP  329 (436)
Q Consensus       280 ~~~-~~~-----------------~------------~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRp  329 (436)
                      ... ...                 .            ......+.|+..++.    ....+++|++||.+..+++++.+ 
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~----~~~~~~~i~~~~~~~~l~~~l~s-  151 (319)
T 2chq_A           77 SDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM----YSKSCRFILSCNYVSRIIEPIQS-  151 (319)
T ss_dssp             TSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS----SSSSEEEEEEESCGGGSCHHHHT-
T ss_pred             ccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh----cCCCCeEEEEeCChhhcchHHHh-
Confidence            000 000                 0            000111223333332    23457889999999999999999 


Q ss_pred             CceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          330 GRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       330 GR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                       |+. .+.|+.|+.++...++...+...
T Consensus       152 -r~~-~i~~~~~~~~~~~~~l~~~~~~~  177 (319)
T 2chq_A          152 -RCA-VFRFKPVPKEAMKKRLLEICEKE  177 (319)
T ss_dssp             -TCE-EEECCCCCHHHHHHHHHHHHHTT
T ss_pred             -hCe-EEEecCCCHHHHHHHHHHHHHHc
Confidence             886 89999999999999998877654

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=99.30  E-value=7.4e-12  Score=129.19  Aligned_cols=130  Identities=18%  Similarity=0.278  Sum_probs=86.7

Q ss_pred             cCCCCCCcccccChhHH---HHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCC
Q 013823          205 LEHPSTFDTLAMDPELK---QMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDG  281 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k---~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~  281 (436)
                      .-.|.+|++++|++.++   +.+...+..           |  ...++||+||||||||++|++||+.++..+.......
T Consensus        19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-----------~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~   85 (447)
T 3pvs_A           19 RMRPENLAQYIGQQHLLAAGKPLPRAIEA-----------G--HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT   85 (447)
T ss_dssp             HTCCCSTTTCCSCHHHHSTTSHHHHHHHH-----------T--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred             HhCCCCHHHhCCcHHHHhchHHHHHHHHc-----------C--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence            45689999999999988   555554431           1  1268999999999999999999999984443322211


Q ss_pred             CC---------------------------CCCCcceeecceeecccCcccCCCCeEEEEEec--CCcCCCCccccCCCce
Q 013823          282 AS---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTT--NHKERIDPALLRPGRM  332 (436)
Q Consensus       282 ~~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TT--N~~~~lD~AllRpGR~  332 (436)
                      ..                           .+.........||..++.      ..+++|++|  |....+++++++  |+
T Consensus        86 ~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~------~~v~lI~att~n~~~~l~~aL~s--R~  157 (447)
T 3pvs_A           86 SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED------GTITFIGATTENPSFELNSALLS--RA  157 (447)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT------TSCEEEEEESSCGGGSSCHHHHT--TE
T ss_pred             CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc------CceEEEecCCCCcccccCHHHhC--ce
Confidence            10                           011111222334444433      125555554  555689999999  98


Q ss_pred             eEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          333 DVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       333 d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                      . .+.|+.|+.+++..++.+++..
T Consensus       158 ~-v~~l~~l~~edi~~il~~~l~~  180 (447)
T 3pvs_A          158 R-VYLLKSLSTEDIEQVLTQAMED  180 (447)
T ss_dssp             E-EEECCCCCHHHHHHHHHHHHHC
T ss_pred             e-EEeeCCcCHHHHHHHHHHHHHH
Confidence            6 6779999999999999998865

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=99.28  E-value=4e-11  Score=124.44  Aligned_cols=135  Identities=20%  Similarity=0.236  Sum_probs=87.9

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh----------cchhh
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------SVEMK  275 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~  275 (436)
                      -.|..|+.|+|.++..+.+.+.+.             ...+.++||+||||||||++|+++|..+          +..+.
T Consensus       174 ~r~~~ld~iiGr~~~i~~l~~~l~-------------r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~  240 (468)
T 3pxg_A          174 AKEDSLDPVIGRSKEIQRVIEVLS-------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM  240 (468)
T ss_dssp             TTSSCSCCCCCCHHHHHHHHHHHH-------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred             HhcCCCCCccCcHHHHHHHHHHHh-------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence            456789999999998888776553             1335689999999999999999999997          22222


Q ss_pred             cccCCCCCCCCCc---ceee------cceeecccCcccC--------CCCeEEEEEecCCcC-----CCCccccCCCcee
Q 013823          276 DRQNDGASVGSNT---KLTL------SGILNFIDGLWSS--------CGDERIIVFTTNHKE-----RIDPALLRPGRMD  333 (436)
Q Consensus       276 ~r~~~~~~~~~~~---~~~~------s~LL~~ldg~~~~--------~~~~~ivI~TTN~~~-----~lD~AllRpGR~d  333 (436)
                      .........+...   +..+      ...+-++|+-...        ....+.+|++||.++     .+|+++.|  ||.
T Consensus       241 ~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~  318 (468)
T 3pxg_A          241 TLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFIDAAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALER--RFQ  318 (468)
T ss_dssp             CC----------CTTHHHHHHHHHTCCCCEEEECC--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHH--SEE
T ss_pred             EeeCCccccchHHHHHHHHHHHHHhcCCeEEEEeCchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHH--hCc
Confidence            2111100000000   0000      0111122211000        123478999999887     69999999  998


Q ss_pred             EEEEcCCCCHHHHHHHHHHHhcc
Q 013823          334 VHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       334 ~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                      . |.|+.|+.+++..|++.++..
T Consensus       319 ~-i~v~~p~~e~~~~iL~~~~~~  340 (468)
T 3pxg_A          319 P-IQVDQPSVDESIQILQGLRDR  340 (468)
T ss_dssp             E-EECCCCCHHHHHHHHHHTTTT
T ss_pred             c-ceeCCCCHHHHHHHHHHHHHH
Confidence            4 999999999999999988765

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=99.27  E-value=1.9e-11  Score=117.31  Aligned_cols=134  Identities=17%  Similarity=0.198  Sum_probs=80.4

Q ss_pred             cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC---------
Q 013823          212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA---------  282 (436)
Q Consensus       212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~---------  282 (436)
                      +.+++.....+.+........   ......+...++++||+||||||||++|+++|+.++..+........         
T Consensus        33 ~~~i~~~~~~~~i~~~~~~l~---~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~  109 (272)
T 1d2n_A           33 NGIIKWGDPVTRVLDDGELLV---QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK  109 (272)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHH---HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred             cCCCCccHHHHHHHHHHHHHH---HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence            346666666566655422221   22333445677899999999999999999999998844332211100         


Q ss_pred             ----------------------C----------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc-cccCC
Q 013823          283 ----------------------S----------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP-ALLRP  329 (436)
Q Consensus       283 ----------------------~----------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~-AllRp  329 (436)
                                            +          ........+..|+..+++... .+..++||+|||.++.+|+ .+.+ 
T Consensus       110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~-~~~~~~ii~ttn~~~~l~~~~l~~-  187 (272)
T 1d2n_A          110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPP-QGRKLLIIGTTSRKDVLQEMEMLN-  187 (272)
T ss_dssp             HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCS-TTCEEEEEEEESCHHHHHHTTCTT-
T ss_pred             HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccC-CCCCEEEEEecCChhhcchhhhhc-
Confidence                                  0          000011122223333343321 2456889999999999998 5555 


Q ss_pred             CceeEEEEcCCCCH-HHHHHHHH
Q 013823          330 GRMDVHINMSYCTV-HGFKVLAS  351 (436)
Q Consensus       330 GR~d~~I~~~~p~~-~~r~~i~~  351 (436)
                       ||+..|++|.++. ++...++.
T Consensus       188 -rf~~~i~~p~l~~r~~i~~i~~  209 (272)
T 1d2n_A          188 -AFSTTIHVPNIATGEQLLEALE  209 (272)
T ss_dssp             -TSSEEEECCCEEEHHHHHHHHH
T ss_pred             -ccceEEcCCCccHHHHHHHHHH
Confidence             9999999987765 44444443

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=99.27  E-value=4e-12  Score=125.43  Aligned_cols=131  Identities=12%  Similarity=0.089  Sum_probs=85.2

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC------
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA------  282 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~------  282 (436)
                      ..+++++|.+++++.+...+..               ++++||+||||||||++|+++|+.++..+........      
T Consensus        24 ~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l   88 (331)
T 2r44_A           24 EVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDL   88 (331)
T ss_dssp             HHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHH
T ss_pred             HhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhc
Confidence            3467889999888877665431               2689999999999999999999998844322211100      


Q ss_pred             ------CCCCCcceeec-------ceeecccCcc----------------------cCCCCeEEEEEecCCcC-----CC
Q 013823          283 ------SVGSNTKLTLS-------GILNFIDGLW----------------------SSCGDERIIVFTTNHKE-----RI  322 (436)
Q Consensus       283 ------~~~~~~~~~~s-------~LL~~ldg~~----------------------~~~~~~~ivI~TTN~~~-----~l  322 (436)
                            ......-....       -++++++.+.                      ...+...++|+|+|..+     .+
T Consensus        89 ~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l  168 (331)
T 2r44_A           89 IGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPL  168 (331)
T ss_dssp             HEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCC
T ss_pred             CCceeecCCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccC
Confidence                  00000000000       0222222111                      01123467788888543     38


Q ss_pred             CccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          323 DPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       323 D~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                      ++++++  ||+.++++++|+.+++..|++.....
T Consensus       169 ~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~  200 (331)
T 2r44_A          169 PEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM  200 (331)
T ss_dssp             CHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred             CHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence            999999  99999999999999999999998764

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=99.24  E-value=3e-11  Score=120.41  Aligned_cols=138  Identities=16%  Similarity=0.230  Sum_probs=90.4

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh----------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM----------  274 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~----------  274 (436)
                      ...|.+|++++|.++.++.+...+..           | ..+..+||+||||||||++++++|+.++...          
T Consensus         9 k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~   76 (373)
T 1jr3_A            9 KWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC   76 (373)
T ss_dssp             HTCCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSS
T ss_pred             hhCCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence            45678999999999999888776541           1 2345799999999999999999999886321          


Q ss_pred             --------------hcccCCC-CCCCC------------CcceeecceeecccCc-----------ccCCCCeEEEEEec
Q 013823          275 --------------KDRQNDG-ASVGS------------NTKLTLSGILNFIDGL-----------WSSCGDERIIVFTT  316 (436)
Q Consensus       275 --------------~~r~~~~-~~~~~------------~~~~~~s~LL~~ldg~-----------~~~~~~~~ivI~TT  316 (436)
                                    ....... .....            ......--++..+|.+           .......+++|++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~  156 (373)
T 1jr3_A           77 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT  156 (373)
T ss_dssp             HHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEE
T ss_pred             HHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEe
Confidence                          0000000 00000            0000000012222211           01123458889999


Q ss_pred             CCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          317 NHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       317 N~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      |.+..+++++.+  |+ ..++|+.|+.++...++..++...
T Consensus       157 ~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~  194 (373)
T 1jr3_A          157 TDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEE  194 (373)
T ss_dssp             SCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred             CChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHc
Confidence            999999999998  87 789999999999999998877543

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.23  E-value=7.3e-11  Score=123.92  Aligned_cols=154  Identities=16%  Similarity=0.241  Sum_probs=92.4

Q ss_pred             CCccccccCCCCCCcccccChhHHHHHHHHHHHHHhh-HHHHHHhCC---CCcceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          198 GMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRR-KEFYRRVGK---AWKRGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       198 ~~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~-~~~~~~~g~---~~~rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      ..|..  ...|.+|++|+|.++.++.|.+.+...... +..+...|.   +.++++||+||||||||++|+++|++++..
T Consensus        27 ~lW~e--kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~  104 (516)
T 1sxj_A           27 KLWTV--KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD  104 (516)
T ss_dssp             CCHHH--HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred             CCccc--ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            35653  567889999999999999998887754322 122333333   356899999999999999999999999844


Q ss_pred             hhcccCCCCCC-----------------CC----------CcceeecceeecccCcccCC--------------CCeEEE
Q 013823          274 MKDRQNDGASV-----------------GS----------NTKLTLSGILNFIDGLWSSC--------------GDERII  312 (436)
Q Consensus       274 ~~~r~~~~~~~-----------------~~----------~~~~~~s~LL~~ldg~~~~~--------------~~~~iv  312 (436)
                      +..........                 ..          ......--+++++|.+....              +..+|+
T Consensus       105 ~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIl  184 (516)
T 1sxj_A          105 ILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLIL  184 (516)
T ss_dssp             EEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEE
T ss_pred             EEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEE
Confidence            43322211100                 00          00000111344444442211              112333


Q ss_pred             EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      |+++.....++ .+.   |+...|.|+.|+.+++..++...+...
T Consensus       185 i~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~  225 (516)
T 1sxj_A          185 ICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIRE  225 (516)
T ss_dssp             EESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred             EEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHc
Confidence            33333334454 344   445689999999999988888776543

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.21  E-value=2.5e-11  Score=120.03  Aligned_cols=141  Identities=17%  Similarity=0.165  Sum_probs=89.8

Q ss_pred             CccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch-----
Q 013823          199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE-----  273 (436)
Q Consensus       199 ~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~-----  273 (436)
                      .|..  ...|.+|++++|.+++++.+...+.    .       |  ...++||+||||||||++|+++|+.++..     
T Consensus        26 ~~~~--k~~p~~~~~i~g~~~~~~~l~~~l~----~-------~--~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~   90 (353)
T 1sxj_D           26 PWVE--KYRPKNLDEVTAQDHAVTVLKKTLK----S-------A--NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS   90 (353)
T ss_dssp             CHHH--HTCCSSTTTCCSCCTTHHHHHHHTT----C-------T--TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHH--hcCCCCHHHhhCCHHHHHHHHHHHh----c-------C--CCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc
Confidence            4553  4578899999999999988766543    1       1  12349999999999999999999987521     


Q ss_pred             -hhcccCCCC-CCC---C----C-----------------cceeecceeecccCccc-----------CCCCeEEEEEec
Q 013823          274 -MKDRQNDGA-SVG---S----N-----------------TKLTLSGILNFIDGLWS-----------SCGDERIIVFTT  316 (436)
Q Consensus       274 -~~~r~~~~~-~~~---~----~-----------------~~~~~s~LL~~ldg~~~-----------~~~~~~ivI~TT  316 (436)
                       +........ ...   .    .                 .....--+++++|.+..           .......+|++|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~  170 (353)
T 1sxj_D           91 RILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLIC  170 (353)
T ss_dssp             SEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred             ceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEe
Confidence             111111110 000   0    0                 00000012223332211           111235677889


Q ss_pred             CCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          317 NHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       317 N~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      |+++.+++++.+  |+. .+.|+.|+.++...++...+...
T Consensus       171 ~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~  208 (353)
T 1sxj_D          171 NYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQE  208 (353)
T ss_dssp             SCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTT
T ss_pred             CchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHh
Confidence            999999999999  986 88999999999888888876543

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=99.21  E-value=2.6e-11  Score=118.40  Aligned_cols=137  Identities=14%  Similarity=0.145  Sum_probs=90.6

Q ss_pred             CccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch-----
Q 013823          199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE-----  273 (436)
Q Consensus       199 ~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~-----  273 (436)
                      .|..  ...|.+|++++|.++.++.+...+..           |  ...++||+||||||||++|+++|+.+...     
T Consensus        14 ~~~~--k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~   78 (327)
T 1iqp_A           14 PWVE--KYRPQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHN   78 (327)
T ss_dssp             CHHH--HTCCCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHH
T ss_pred             chhh--ccCCCCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCc
Confidence            4543  56788999999999999988765541           1  12359999999999999999999986411     


Q ss_pred             hhcccCCCC------------------CC-C-----------CCcceeecceeecccCcccCCCCeEEEEEecCCcCCCC
Q 013823          274 MKDRQNDGA------------------SV-G-----------SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERID  323 (436)
Q Consensus       274 ~~~r~~~~~------------------~~-~-----------~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD  323 (436)
                      +........                  .. +           .......+.|+..++.    ....+.+|+|||.++.++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~----~~~~~~~i~~~~~~~~l~  154 (327)
T 1iqp_A           79 FLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEM----FSSNVRFILSCNYSSKII  154 (327)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHH----TTTTEEEEEEESCGGGSC
T ss_pred             eEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHh----cCCCCeEEEEeCCccccC
Confidence            111110000                  00 0           0000111122222222    123478888999999999


Q ss_pred             ccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          324 PALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       324 ~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      +++.+  |+. .+.|+.++.++...++...+...
T Consensus       155 ~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~  185 (327)
T 1iqp_A          155 EPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENE  185 (327)
T ss_dssp             HHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhc
Confidence            99998  886 78999999999988888876543

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=99.21  E-value=5.9e-12  Score=112.34  Aligned_cols=128  Identities=17%  Similarity=0.199  Sum_probs=80.2

Q ss_pred             CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc----------hhhc
Q 013823          207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV----------EMKD  276 (436)
Q Consensus       207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~----------~~~~  276 (436)
                      .|..|++++|.++..+.+.+.+.             ...++++||+||||||||++++++|+.+..          .+..
T Consensus        17 ~~~~~~~~~g~~~~~~~l~~~l~-------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~   83 (195)
T 1jbk_A           17 EQGKLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA   83 (195)
T ss_dssp             HTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred             hhccccccccchHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence            46789999999988887766543             134578999999999999999999998731          1110


Q ss_pred             cc-----CCCCCCCC-------------CcceeecceeecccCcccC-----------------CCCeEEEEEecCCcC-
Q 013823          277 RQ-----NDGASVGS-------------NTKLTLSGILNFIDGLWSS-----------------CGDERIIVFTTNHKE-  320 (436)
Q Consensus       277 r~-----~~~~~~~~-------------~~~~~~s~LL~~ldg~~~~-----------------~~~~~ivI~TTN~~~-  320 (436)
                      ..     ......+.             ......--+++.+|.+...                 ...++.+|+|||.++ 
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~  163 (195)
T 1jbk_A           84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEY  163 (195)
T ss_dssp             ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHH
T ss_pred             eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHHH
Confidence            00     00000000             0000000122222222100                 012467888998876 


Q ss_pred             ----CCCccccCCCceeEEEEcCCCCHHHHHHHH
Q 013823          321 ----RIDPALLRPGRMDVHINMSYCTVHGFKVLA  350 (436)
Q Consensus       321 ----~lD~AllRpGR~d~~I~~~~p~~~~r~~i~  350 (436)
                          .+|+++++  ||+ .|+++.|+.+++..|+
T Consensus       164 ~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il  194 (195)
T 1jbk_A          164 RQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             HHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred             HHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence                78999999  998 6999999999987664

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=99.20  E-value=3.7e-11  Score=118.80  Aligned_cols=45  Identities=18%  Similarity=0.173  Sum_probs=37.3

Q ss_pred             eEEEEEecCCcC-CCCccccCCCceeEEEEcCCC-CHHHHHHHHHHHhc
Q 013823          309 ERIIVFTTNHKE-RIDPALLRPGRMDVHINMSYC-TVHGFKVLASNYLG  355 (436)
Q Consensus       309 ~~ivI~TTN~~~-~lD~AllRpGR~d~~I~~~~p-~~~~r~~i~~~~l~  355 (436)
                      .+++|+|||..+ .++++|++  ||+.+++++.| +.+.+..|+.+.+.
T Consensus       187 ~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~~  233 (350)
T 1g8p_A          187 RFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRDT  233 (350)
T ss_dssp             CEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHHh
Confidence            478899999755 89999999  99999999999 56777788877543

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=99.19  E-value=1.4e-11  Score=123.43  Aligned_cols=58  Identities=24%  Similarity=0.308  Sum_probs=42.8

Q ss_pred             cccChhHHHHHHHHHHHHHhhHHHHHH-hCC-CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          214 LAMDPELKQMILDDLDRFLRRKEFYRR-VGK-AWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       214 i~g~~~~k~~i~~~l~~~l~~~~~~~~-~g~-~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |+|++..++.|...+............ .+. ..++++||+||||||||++|++||+.++
T Consensus        17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~   76 (363)
T 3hws_A           17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD   76 (363)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            689999999998888644432211000 111 2467899999999999999999999987

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=99.19  E-value=1.6e-10  Score=107.36  Aligned_cols=139  Identities=12%  Similarity=0.105  Sum_probs=77.8

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch---hhcccCCC
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE---MKDRQNDG  281 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~---~~~r~~~~  281 (436)
                      +.++.+|+++++.+..+ .+.+.+..+...         +.+++++|+||||||||++++++|+++...   +.......
T Consensus        21 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~   90 (242)
T 3bos_A           21 LPDDETFTSYYPAAGND-ELIGALKSAASG---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI   90 (242)
T ss_dssp             CCTTCSTTTSCC--CCH-HHHHHHHHHHHT---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             CCCCCChhhccCCCCCH-HHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence            44557899998733212 222333322221         245789999999999999999999987621   00000000


Q ss_pred             C--------------------CCCCCccee--ecceeecccCcccCCCCeEEEEEecC-CcC---CCCccccCCCcee--
Q 013823          282 A--------------------SVGSNTKLT--LSGILNFIDGLWSSCGDERIIVFTTN-HKE---RIDPALLRPGRMD--  333 (436)
Q Consensus       282 ~--------------------~~~~~~~~~--~s~LL~~ldg~~~~~~~~~ivI~TTN-~~~---~lD~AllRpGR~d--  333 (436)
                      .                    +.+......  ...|+..++.....  ....+|+||| .+.   .+++++.+  ||+  
T Consensus        91 ~~~~~~~~~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~--~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~  166 (242)
T 3bos_A           91 HASISTALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQ--KRGSLIVSASASPMEAGFVLPDLVS--RMHWG  166 (242)
T ss_dssp             GGGSCGGGGTTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHH--CSCEEEEEESSCTTTTTCCCHHHHH--HHHHS
T ss_pred             HHHHHHHHHHhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHc--CCCeEEEEcCCCHHHHHHhhhhhhh--HhhcC
Confidence            0                    000000000  11223333322211  1122445544 444   45688888  886  


Q ss_pred             EEEEcCCCCHHHHHHHHHHHhccc
Q 013823          334 VHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       334 ~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      ..++++.|+.+++..++..++...
T Consensus       167 ~~i~l~~~~~~~~~~~l~~~~~~~  190 (242)
T 3bos_A          167 LTYQLQPMMDDEKLAALQRRAAMR  190 (242)
T ss_dssp             EEEECCCCCGGGHHHHHHHHHHHT
T ss_pred             ceEEeCCCCHHHHHHHHHHHHHHc
Confidence            899999999999999999887643

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.19  E-value=1.8e-10  Score=126.36  Aligned_cols=135  Identities=20%  Similarity=0.229  Sum_probs=88.3

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh----------cchhh
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------SVEMK  275 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~  275 (436)
                      -.|..|+.|+|.++.++.+.+.+.             ...+.++||+||||||||++|+++|+.+          +..+.
T Consensus       174 ~~~~~ld~iiG~~~~i~~l~~~l~-------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~  240 (758)
T 3pxi_A          174 AKEDSLDPVIGRSKEIQRVIEVLS-------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM  240 (758)
T ss_dssp             TTSSCSCCCCCCHHHHHHHHHHHH-------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred             HhhCCCCCccCchHHHHHHHHHHh-------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence            456789999999999998876543             1345689999999999999999999997          32222


Q ss_pred             cccCCCCCCCCCc---ceee------cceeecccCccc--------CCCCeEEEEEecCCcC-----CCCccccCCCcee
Q 013823          276 DRQNDGASVGSNT---KLTL------SGILNFIDGLWS--------SCGDERIIVFTTNHKE-----RIDPALLRPGRMD  333 (436)
Q Consensus       276 ~r~~~~~~~~~~~---~~~~------s~LL~~ldg~~~--------~~~~~~ivI~TTN~~~-----~lD~AllRpGR~d  333 (436)
                      ..+......+...   +..+      ...+-++|+-..        -...++.+|+|||..+     .+|+++.|  ||.
T Consensus       241 ~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~r--Rf~  318 (758)
T 3pxi_A          241 TLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFIDAAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALER--RFQ  318 (758)
T ss_dssp             CC----------CTTHHHHHHHHHTCCCCEEEECC--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHH--SEE
T ss_pred             EecccccccchHHHHHHHHHHHHHhcCCEEEEEcCchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHh--hCc
Confidence            1111000000000   0000      001112221100        0023578999999888     79999999  995


Q ss_pred             EEEEcCCCCHHHHHHHHHHHhcc
Q 013823          334 VHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       334 ~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                       .|.|+.|+.+++..|++.+...
T Consensus       319 -~i~v~~p~~~~~~~il~~~~~~  340 (758)
T 3pxi_A          319 -PIQVDQPSVDESIQILQGLRDR  340 (758)
T ss_dssp             -EEECCCCCHHHHHHHHHHTTTT
T ss_pred             -EEEeCCCCHHHHHHHHHHHHHH
Confidence             5999999999999999987765

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.17  E-value=7.9e-11  Score=114.70  Aligned_cols=140  Identities=14%  Similarity=0.136  Sum_probs=89.7

Q ss_pred             CccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc-----h
Q 013823          199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV-----E  273 (436)
Q Consensus       199 ~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~-----~  273 (436)
                      .|..  ...|.+|++++|.++.++.+.+.+..           | ..+. +|||||||||||++|+++|+.+..     .
T Consensus        10 ~~~~--~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~   74 (323)
T 1sxj_B           10 PWVE--KYRPQVLSDIVGNKETIDRLQQIAKD-----------G-NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADG   74 (323)
T ss_dssp             CHHH--HTCCSSGGGCCSCTHHHHHHHHHHHS-----------C-CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHH
T ss_pred             cHHH--hcCCCCHHHHHCCHHHHHHHHHHHHc-----------C-CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCC
Confidence            4543  46788999999999999988776531           2 2233 999999999999999999998631     1


Q ss_pred             hhcccCCCC-C--------------CCCC-cceeecceeecccCcc-----------cCCCCeEEEEEecCCcCCCCccc
Q 013823          274 MKDRQNDGA-S--------------VGSN-TKLTLSGILNFIDGLW-----------SSCGDERIIVFTTNHKERIDPAL  326 (436)
Q Consensus       274 ~~~r~~~~~-~--------------~~~~-~~~~~s~LL~~ldg~~-----------~~~~~~~ivI~TTN~~~~lD~Al  326 (436)
                      +........ .              .... .....--+++.+|.+.           ........+|++||.+..+++++
T Consensus        75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l  154 (323)
T 1sxj_B           75 VLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPL  154 (323)
T ss_dssp             EEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred             EEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHH
Confidence            111111110 0              0000 0000001222222210           11123477888999999999999


Q ss_pred             cCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          327 LRPGRMDVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       327 lRpGR~d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                      .+  |+. .++|+.|+.++...++...+..
T Consensus       155 ~s--r~~-~i~~~~~~~~~~~~~l~~~~~~  181 (323)
T 1sxj_B          155 QS--QCA-ILRYSKLSDEDVLKRLLQIIKL  181 (323)
T ss_dssp             HT--TSE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred             Hh--hce-EEeecCCCHHHHHHHHHHHHHH
Confidence            98  875 8999999999999998887654

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.15  E-value=1.9e-10  Score=114.00  Aligned_cols=170  Identities=16%  Similarity=0.170  Sum_probs=102.5

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC--
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA--  282 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~--  282 (436)
                      .-.|.+|++++|.+.+++.+...+..-.       ..| ..+..++|+||||||||+|+++||++++..+........  
T Consensus        18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~-------~~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~   89 (334)
T 1in4_A           18 FLRPKSLDEFIGQENVKKKLSLALEAAK-------MRG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK   89 (334)
T ss_dssp             TTSCSSGGGCCSCHHHHHHHHHHHHHHH-------HHT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS
T ss_pred             HcCCccHHHccCcHHHHHHHHHHHHHHH-------hcC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC
Confidence            3567799999999888777655543211       112 234679999999999999999999999643221111000  


Q ss_pred             --------------------CCCCCcceeecceeecccCcc------cCC--------CCeEEEEEecCCcCCCCccccC
Q 013823          283 --------------------SVGSNTKLTLSGILNFIDGLW------SSC--------GDERIIVFTTNHKERIDPALLR  328 (436)
Q Consensus       283 --------------------~~~~~~~~~~s~LL~~ldg~~------~~~--------~~~~ivI~TTN~~~~lD~AllR  328 (436)
                                          +.+.........|+..++...      ...        -..+.++.+||++..|++++++
T Consensus        90 ~~~l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s  169 (334)
T 1in4_A           90 QGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS  169 (334)
T ss_dssp             HHHHHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT
T ss_pred             HHHHHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH
Confidence                                000000000111111111110      000        0125667799999999999999


Q ss_pred             CCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHHHHHHH
Q 013823          329 PGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEEL  385 (436)
Q Consensus       329 pGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpaei~~~l  385 (436)
                        ||...+.+++++.+++..++++.....+ .....+.+..++....-+|..+...|
T Consensus       170 --R~~l~~~Ld~~~~~~l~~iL~~~~~~~~-~~~~~~~~~~ia~~~~G~~R~a~~ll  223 (334)
T 1in4_A          170 --RFGIILELDFYTVKELKEIIKRAASLMD-VEIEDAAAEMIAKRSRGTPRIAIRLT  223 (334)
T ss_dssp             --TCSEEEECCCCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             --hcCceeeCCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHhcCCChHHHHHHH
Confidence              9999999999999999999988765432 12233445555555555665554443

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=99.15  E-value=4.5e-11  Score=116.33  Aligned_cols=139  Identities=18%  Similarity=0.233  Sum_probs=85.7

Q ss_pred             cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc---hhhcccCCCC------
Q 013823          212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV---EMKDRQNDGA------  282 (436)
Q Consensus       212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~---~~~~r~~~~~------  282 (436)
                      ++++|.+..++.|...+......-   .. ...+...+||+||||||||++|+++|+.+..   .+........      
T Consensus        17 ~~i~G~~~~~~~l~~~i~~~~~~~---~~-~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~   92 (311)
T 4fcw_A           17 KRVVGQDEAIRAVADAIRRARAGL---KD-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV   92 (311)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTC---SC-TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred             hhcCCHHHHHHHHHHHHHHHhcCC---CC-CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence            357889999998888776432110   00 0112246999999999999999999998741   1110000000      


Q ss_pred             ---------CCC-------------------------CCcceeecceeecccCcccCCC-------CeEEEEEecCC---
Q 013823          283 ---------SVG-------------------------SNTKLTLSGILNFIDGLWSSCG-------DERIIVFTTNH---  318 (436)
Q Consensus       283 ---------~~~-------------------------~~~~~~~s~LL~~ldg~~~~~~-------~~~ivI~TTN~---  318 (436)
                               ..+                         .......+.|+..|+.-....+       .++++|+|||.   
T Consensus        93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~  172 (311)
T 4fcw_A           93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSP  172 (311)
T ss_dssp             HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHH
T ss_pred             HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHH
Confidence                     000                         0001111222233322110000       24779999998   


Q ss_pred             -----------------------cCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          319 -----------------------KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       319 -----------------------~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                                             ...++|+|+.  ||+..+.|++|+.+++..|+.+++..
T Consensus       173 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~  231 (311)
T 4fcw_A          173 LILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSY  231 (311)
T ss_dssp             HHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHH
T ss_pred             HHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence                                   5578899998  99999999999999999999998854

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=99.11  E-value=5e-11  Score=106.16  Aligned_cols=52  Identities=19%  Similarity=0.330  Sum_probs=42.3

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      ..|.+|++++|.++..+.+.+.+.             ...++++||+||||||||++|+++|+.+
T Consensus        16 ~~~~~~~~~~g~~~~~~~l~~~l~-------------~~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           16 ARAGKLDPVIGRDTEIRRAIQILS-------------RRTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             HHTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HhccccchhhcchHHHHHHHHHHh-------------CCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            346789999999988777766442             1335789999999999999999999987

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.09  E-value=9.5e-11  Score=128.54  Aligned_cols=135  Identities=16%  Similarity=0.184  Sum_probs=86.5

Q ss_pred             cccccChhHHHHHHHHHHHHHhhHHHHHHhCCC---Ccc-eeeEeCCCCCChhHHHHHHHHHhc---chhhcccCCCC--
Q 013823          212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA---WKR-GYLLYGPPGTGKSSLIAAMANYLS---VEMKDRQNDGA--  282 (436)
Q Consensus       212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~---~~r-g~LL~GPpGtGKT~la~aiA~~l~---~~~~~r~~~~~--  282 (436)
                      +.|+|.++.++.|.+.+....        .|..   .|. ++||+||||||||++|+++|+.+.   ..+........  
T Consensus       491 ~~viGq~~a~~~l~~~i~~~~--------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~  562 (758)
T 3pxi_A          491 SRVIGQDEAVVAVAKAVRRAR--------AGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME  562 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHT--------TTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred             CcCcChHHHHHHHHHHHHHHH--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence            468899999988888776432        2222   222 599999999999999999999973   11111100000  


Q ss_pred             ------------------------CCCCCcceeecceeecccCcccC-------CCCeEEEEEecCCcCC----------
Q 013823          283 ------------------------SVGSNTKLTLSGILNFIDGLWSS-------CGDERIIVFTTNHKER----------  321 (436)
Q Consensus       283 ------------------------~~~~~~~~~~s~LL~~ldg~~~~-------~~~~~ivI~TTN~~~~----------  321 (436)
                                              +.+.......+.|++.||.-.-.       ...+++||+|||.+..          
T Consensus       563 ~~~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~  642 (758)
T 3pxi_A          563 KHSTSGGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELK  642 (758)
T ss_dssp             SCCCC---CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHH
T ss_pred             ccccccchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHH
Confidence                                    00111222334455555531100       1124689999997554          


Q ss_pred             --CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          322 --IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       322 --lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                        ++|+|+.  |||..|.|+.|+.+++..|+..++..
T Consensus       643 ~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~  677 (758)
T 3pxi_A          643 RAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQ  677 (758)
T ss_dssp             HHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHH
T ss_pred             hhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHH
Confidence              7788888  99999999999999999999998754

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=99.08  E-value=1.8e-10  Score=113.23  Aligned_cols=161  Identities=16%  Similarity=0.186  Sum_probs=89.2

Q ss_pred             cCCCCCCcccc-cChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh---cchhhcccCC
Q 013823          205 LEHPSTFDTLA-MDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---SVEMKDRQND  280 (436)
Q Consensus       205 ~~~~~~~~~i~-g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~r~~~  280 (436)
                      +.+..+|++++ |.... ..+ ..+......+       ...+.+++||||||||||++++++++++   +..+......
T Consensus         4 l~~~~~f~~fv~g~~~~-~a~-~~~~~~~~~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~   74 (324)
T 1l8q_A            4 LNPKYTLENFIVGEGNR-LAY-EVVKEALENL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD   74 (324)
T ss_dssp             CCTTCCSSSCCCCTTTH-HHH-HHHHHHHHTT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             CCCCCCcccCCCCCcHH-HHH-HHHHHHHhCc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence            44556899987 44332 211 2233222221       1234689999999999999999999988   4111100000


Q ss_pred             ------------------------CC-----CCCCCcc--eeecceeecccCcccCCCCeEEEEEecCCcC---CCCccc
Q 013823          281 ------------------------GA-----SVGSNTK--LTLSGILNFIDGLWSSCGDERIIVFTTNHKE---RIDPAL  326 (436)
Q Consensus       281 ------------------------~~-----~~~~~~~--~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~---~lD~Al  326 (436)
                                              ..     +.+....  .....++..++.....  +..+|+.++|.+.   .+++++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~--~~~iii~~~~~~~~l~~l~~~L  152 (324)
T 1l8q_A           75 DFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLL--EKQIILASDRHPQKLDGVSDRL  152 (324)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHT--TCEEEEEESSCGGGCTTSCHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHC--CCeEEEEecCChHHHHHhhhHh
Confidence                                    00     0000000  1112223333322221  2356667777776   688999


Q ss_pred             cCCCcee--EEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHHH
Q 013823          327 LRPGRMD--VHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEV  381 (436)
Q Consensus       327 lRpGR~d--~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpaei  381 (436)
                      .+  ||+  ..++++. +.+++..++..++...+ .....+.+..++... -...++
T Consensus       153 ~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~-~~l~~~~l~~l~~~~-g~~r~l  204 (324)
T 1l8q_A          153 VS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFN-LELRKEVIDYLLENT-KNVREI  204 (324)
T ss_dssp             HH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHC-SSHHHH
T ss_pred             hh--cccCceEEEeCC-CHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHhC-CCHHHH
Confidence            98  996  7899999 99999999999886542 222233344444433 344443

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.05  E-value=4.7e-10  Score=111.16  Aligned_cols=139  Identities=22%  Similarity=0.269  Sum_probs=86.3

Q ss_pred             CccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch-----
Q 013823          199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE-----  273 (436)
Q Consensus       199 ~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~-----  273 (436)
                      .|..  ...|.+|++++|++++++.|...+.           -| ..+ .+|||||||||||++++++|+.+...     
T Consensus        14 ~~~~--k~rp~~~~~~~g~~~~~~~L~~~i~-----------~g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~   78 (340)
T 1sxj_C           14 PWVE--KYRPETLDEVYGQNEVITTVRKFVD-----------EG-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNM   78 (340)
T ss_dssp             CHHH--HTCCSSGGGCCSCHHHHHHHHHHHH-----------TT-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHH
T ss_pred             chHH--HhCCCcHHHhcCcHHHHHHHHHHHh-----------cC-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccce
Confidence            4644  5678999999999988887766554           12 122 39999999999999999999987411     


Q ss_pred             hhcccCCCC-CC-------------C-CCcceeecceeecccCcc-----------cCCCCeEEEEEecCCcCCCCcccc
Q 013823          274 MKDRQNDGA-SV-------------G-SNTKLTLSGILNFIDGLW-----------SSCGDERIIVFTTNHKERIDPALL  327 (436)
Q Consensus       274 ~~~r~~~~~-~~-------------~-~~~~~~~s~LL~~ldg~~-----------~~~~~~~ivI~TTN~~~~lD~All  327 (436)
                      +........ ..             . .......--++..+|.+.           ........+|++||.+..+.+++.
T Consensus        79 ~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~  158 (340)
T 1sxj_C           79 VLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALL  158 (340)
T ss_dssp             EEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred             EEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHH
Confidence            111111000 00             0 000000000122222211           011233677888999999999999


Q ss_pred             CCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823          328 RPGRMDVHINMSYCTVHGFKVLASNYLG  355 (436)
Q Consensus       328 RpGR~d~~I~~~~p~~~~r~~i~~~~l~  355 (436)
                      +  |+. .+.|+.++.++....+...+.
T Consensus       159 s--R~~-~~~~~~l~~~~~~~~l~~~~~  183 (340)
T 1sxj_C          159 S--QCT-RFRFQPLPQEAIERRIANVLV  183 (340)
T ss_dssp             T--TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred             h--hce-eEeccCCCHHHHHHHHHHHHH
Confidence            9  885 789999998888777777663

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=99.05  E-value=4.7e-10  Score=112.71  Aligned_cols=59  Identities=22%  Similarity=0.339  Sum_probs=43.7

Q ss_pred             ccccChhHHHHHHHHHHHHHhhHHH------------------HHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          213 TLAMDPELKQMILDDLDRFLRRKEF------------------YRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       213 ~i~g~~~~k~~i~~~l~~~l~~~~~------------------~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      .|+|+++.|+.|...+.........                  +.. ....+.++||+||||||||++|+++|+.++.
T Consensus        22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~-~~~~~~~ill~Gp~GtGKT~la~~la~~l~~   98 (376)
T 1um8_A           22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEE-VELSKSNILLIGPTGSGKTLMAQTLAKHLDI   98 (376)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH-TTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccc-cccCCCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4899999999998877544332221                  111 1234568999999999999999999999983

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.02  E-value=3e-10  Score=112.64  Aligned_cols=138  Identities=15%  Similarity=0.185  Sum_probs=86.5

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc-hh---------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV-EM---------  274 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~-~~---------  274 (436)
                      ..+|.+|++++|.+++++.+...+.   .       .| ..+. +||+||||||||++++++|+++.. ..         
T Consensus         7 kyrP~~~~~~vg~~~~~~~l~~~~~---~-------~~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~   74 (354)
T 1sxj_E            7 KYRPKSLNALSHNEELTNFLKSLSD---Q-------PR-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ   74 (354)
T ss_dssp             TTCCCSGGGCCSCHHHHHHHHTTTT---C-------TT-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------
T ss_pred             ccCCCCHHHhcCCHHHHHHHHHHHh---h-------CC-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee
Confidence            4678999999999998887765431   1       11 2233 999999999999999999996521 00         


Q ss_pred             -------------------hcccCCCCCCCC--Ccce---------ee------c--------ceeecccCccc------
Q 013823          275 -------------------KDRQNDGASVGS--NTKL---------TL------S--------GILNFIDGLWS------  304 (436)
Q Consensus       275 -------------------~~r~~~~~~~~~--~~~~---------~~------s--------~LL~~ldg~~~------  304 (436)
                                         ............  ....         .+      +        -++++.+.+..      
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L  154 (354)
T 1sxj_E           75 FVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAAL  154 (354)
T ss_dssp             -----------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHH
T ss_pred             ecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHH
Confidence                               000000000000  0000         00      0        02222222110      


Q ss_pred             -----CCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          305 -----SCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       305 -----~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                           ....+..+|++||.++.+.+++.+  |+ ..+.|+.|+.++...++...+...
T Consensus       155 ~~~le~~~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~  209 (354)
T 1sxj_E          155 RRTMEKYSKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNE  209 (354)
T ss_dssp             HHHHHHSTTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHc
Confidence                 012347888999999999999998  88 789999999999999998877544

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.02  E-value=2.8e-10  Score=124.66  Aligned_cols=135  Identities=16%  Similarity=0.217  Sum_probs=86.4

Q ss_pred             cccccChhHHHHHHHHHHHHHhhHHHHHHhCCC----CcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC-----
Q 013823          212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA-----  282 (436)
Q Consensus       212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~----~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~-----  282 (436)
                      +.|+|.++.++.|...+..        .+.|..    +..++||+||||||||++|+++|+.++..+........     
T Consensus       458 ~~v~g~~~~~~~l~~~i~~--------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~  529 (758)
T 1r6b_X          458 MLVFGQDKAIEALTEAIKM--------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHT  529 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHH--------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSC
T ss_pred             hhccCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhh
Confidence            3477888888877765542        233432    22369999999999999999999999833321111000     


Q ss_pred             ----------C-------------------------CCCCcceeecceeecccCcc-c-CCC-----CeEEEEEecCCcC
Q 013823          283 ----------S-------------------------VGSNTKLTLSGILNFIDGLW-S-SCG-----DERIIVFTTNHKE  320 (436)
Q Consensus       283 ----------~-------------------------~~~~~~~~~s~LL~~ldg~~-~-~~~-----~~~ivI~TTN~~~  320 (436)
                                .                         .+.......+.|++.||.-. . ..+     .+++||+|||...
T Consensus       530 ~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~  609 (758)
T 1r6b_X          530 VSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGV  609 (758)
T ss_dssp             CSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSC
T ss_pred             HhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcch
Confidence                      0                         00011112223333333211 0 000     2478999999754


Q ss_pred             -------------------------CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          321 -------------------------RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       321 -------------------------~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                                               .++|+|+.  |||.+|.|+.|+.+++..|+..++..
T Consensus       610 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~  668 (758)
T 1r6b_X          610 RETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVE  668 (758)
T ss_dssp             C-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             hhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHH
Confidence                                     67888888  99999999999999999999998853

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=98.95  E-value=1.2e-09  Score=108.84  Aligned_cols=137  Identities=19%  Similarity=0.093  Sum_probs=85.7

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh---------cchhhcccC
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---------SVEMKDRQN  279 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---------~~~~~~r~~  279 (436)
                      ...++++|.++..+.+...+...+.         ...+++++|+||||||||++++++++.+         +..+.....
T Consensus        16 ~~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~   86 (387)
T 2v1u_A           16 YVPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA   86 (387)
T ss_dssp             CCCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence            3458899999998888776542211         1345789999999999999999999988         422211110


Q ss_pred             CCC-------------------CCCC--------------CcceeecceeecccCccc-----------------CC-CC
Q 013823          280 DGA-------------------SVGS--------------NTKLTLSGILNFIDGLWS-----------------SC-GD  308 (436)
Q Consensus       280 ~~~-------------------~~~~--------------~~~~~~s~LL~~ldg~~~-----------------~~-~~  308 (436)
                      ...                   ..+.              ......--++++++.+..                 .. +.
T Consensus        87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~  166 (387)
T 2v1u_A           87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRV  166 (387)
T ss_dssp             TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC----
T ss_pred             CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCc
Confidence            000                   0000              000000011222221110                 00 23


Q ss_pred             eEEEEEecCCc---CCCCccccCCCceeE-EEEcCCCCHHHHHHHHHHHhcc
Q 013823          309 ERIIVFTTNHK---ERIDPALLRPGRMDV-HINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       309 ~~ivI~TTN~~---~~lD~AllRpGR~d~-~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                      .+.+|+|||.+   +.+++++.+  ||.. .|+|+.++.++...++...+..
T Consensus       167 ~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~  216 (387)
T 2v1u_A          167 WVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEE  216 (387)
T ss_dssp             -CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHH
T ss_pred             eEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHh
Confidence            57899999988   788999998  8875 8999999999999999988753

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.94  E-value=1.1e-09  Score=112.58  Aligned_cols=139  Identities=16%  Similarity=0.233  Sum_probs=79.4

Q ss_pred             cCCCCCCcccc-cChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh-----cchhhccc
Q 013823          205 LEHPSTFDTLA-MDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----SVEMKDRQ  278 (436)
Q Consensus       205 ~~~~~~~~~i~-g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~r~  278 (436)
                      +.+..+|++++ |.....  ....+......+      + . +.+++||||||||||+|+++||+++     +..+....
T Consensus        98 l~~~~tfd~fv~g~~n~~--a~~~~~~~a~~~------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~  167 (440)
T 2z4s_A           98 LNPDYTFENFVVGPGNSF--AYHAALEVAKHP------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT  167 (440)
T ss_dssp             CCTTCSGGGCCCCTTTHH--HHHHHHHHHHST------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred             CCCCCChhhcCCCCchHH--HHHHHHHHHhCC------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence            44445899987 544332  122222222221      1 1 5789999999999999999999988     31110000


Q ss_pred             ------------------------C-CCC-----CCCCCcc--eeecceeecccCcccCCCCeEEEEEecCCcCC---CC
Q 013823          279 ------------------------N-DGA-----SVGSNTK--LTLSGILNFIDGLWSSCGDERIIVFTTNHKER---ID  323 (436)
Q Consensus       279 ------------------------~-~~~-----~~~~~~~--~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~---lD  323 (436)
                                              . ...     +.+....  .....|+..++.+...  +..+||.|.+.+..   ++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~--~~~iIitt~~~~~~l~~l~  245 (440)
T 2z4s_A          168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDS--GKQIVICSDREPQKLSEFQ  245 (440)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTT--TCEEEEEESSCGGGCSSCC
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHC--CCeEEEEECCCHHHHHHHH
Confidence                                    0 000     0000000  1112233333332221  22455555555554   88


Q ss_pred             ccccCCCcee--EEEEcCCCCHHHHHHHHHHHhccc
Q 013823          324 PALLRPGRMD--VHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       324 ~AllRpGR~d--~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      +++++  ||+  ..+.++.|+.+++..++...+...
T Consensus       246 ~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~  279 (440)
T 2z4s_A          246 DRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIE  279 (440)
T ss_dssp             HHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHc
Confidence            99999  996  789999999999999999887543

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=98.93  E-value=1.9e-09  Score=118.18  Aligned_cols=134  Identities=16%  Similarity=0.156  Sum_probs=84.7

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc----------chhh
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS----------VEMK  275 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~----------~~~~  275 (436)
                      -.|..|++++|.++..+.+.+.+.             ...+.++||+||||||||++|+++|+.+.          ..+.
T Consensus       180 ~~~~~~d~~iGr~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~  246 (758)
T 1r6b_X          180 ARVGGIDPLIGREKELERAIQVLC-------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY  246 (758)
T ss_dssp             HHTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred             HhcCCCCCccCCHHHHHHHHHHHh-------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEE
Confidence            346789999999988887766443             23457899999999999999999999873          1111


Q ss_pred             cccCCC-----CCCCCCc------------ceeecceeecccCcccC------------------CCCeEEEEEecCCcC
Q 013823          276 DRQNDG-----ASVGSNT------------KLTLSGILNFIDGLWSS------------------CGDERIIVFTTNHKE  320 (436)
Q Consensus       276 ~r~~~~-----~~~~~~~------------~~~~s~LL~~ldg~~~~------------------~~~~~ivI~TTN~~~  320 (436)
                      ......     ...+...            ....--+++.++.+...                  ...++.+|++||.++
T Consensus       247 ~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~  326 (758)
T 1r6b_X          247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQE  326 (758)
T ss_dssp             ECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHH
T ss_pred             EEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchH
Confidence            110000     0000000            00000122222222000                  013467888888653


Q ss_pred             -----CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823          321 -----RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG  355 (436)
Q Consensus       321 -----~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~  355 (436)
                           .+|++|.|  ||+ .|.|+.|+.+++..++..+..
T Consensus       327 ~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~  363 (758)
T 1r6b_X          327 FSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP  363 (758)
T ss_dssp             HHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred             HhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHH
Confidence                 57899999  998 699999999999999987654

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=98.92  E-value=2.8e-10  Score=121.37  Aligned_cols=107  Identities=18%  Similarity=0.235  Sum_probs=69.1

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcchhhcccC----CCC-------------------------------CCCCCcceee
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN----DGA-------------------------------SVGSNTKLTL  292 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~----~~~-------------------------------~~~~~~~~~~  292 (436)
                      ++||+||||||||++|+++|+.++........    .+.                               +.+.......
T Consensus       329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q  408 (595)
T 3f9v_A          329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDR  408 (595)
T ss_dssp             CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHH
T ss_pred             ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHhHh
Confidence            69999999999999999999988622111000    000                               0001111122


Q ss_pred             cceeecccCc---------ccCCCCeEEEEEecCCcC-------------CCCccccCCCcee-EEEEcCCCCHHHHHHH
Q 013823          293 SGILNFIDGL---------WSSCGDERIIVFTTNHKE-------------RIDPALLRPGRMD-VHINMSYCTVHGFKVL  349 (436)
Q Consensus       293 s~LL~~ldg~---------~~~~~~~~ivI~TTN~~~-------------~lD~AllRpGR~d-~~I~~~~p~~~~r~~i  349 (436)
                      +.|+..|+.-         .......+.||+|||.+.             .|++|+++  ||| ..+..++|+.+ ...|
T Consensus       409 ~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i  485 (595)
T 3f9v_A          409 VAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DREL  485 (595)
T ss_dssp             HHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHH
T ss_pred             hhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHH
Confidence            3344444321         111123467999999887             89999999  998 56677888888 8888


Q ss_pred             HHHHhccc
Q 013823          350 ASNYLGIK  357 (436)
Q Consensus       350 ~~~~l~~~  357 (436)
                      +++.+...
T Consensus       486 ~~~il~~~  493 (595)
T 3f9v_A          486 ANYILDVH  493 (595)
T ss_dssp             HHHHHTTT
T ss_pred             HHHHHHHh
Confidence            88888754

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=98.91  E-value=4.2e-09  Score=116.97  Aligned_cols=133  Identities=18%  Similarity=0.196  Sum_probs=83.7

Q ss_pred             CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh----------cchhhc
Q 013823          207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------SVEMKD  276 (436)
Q Consensus       207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~  276 (436)
                      .|..|++++|.++..+.+.+.+.             ...++++||+||||||||++|+++|+.+          +..+..
T Consensus       165 r~~~ld~viGr~~~i~~l~~~l~-------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~  231 (854)
T 1qvr_A          165 AEGKLDPVIGRDEEIRRVIQILL-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS  231 (854)
T ss_dssp             HTTCSCCCCSCHHHHHHHHHHHH-------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred             hcCCCcccCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence            46789999999988877766442             1345689999999999999999999987          322221


Q ss_pred             ccCCCCC-----CCCC-------------cceeecceeecccCcccC-----------------CCCeEEEEEecCCcC-
Q 013823          277 RQNDGAS-----VGSN-------------TKLTLSGILNFIDGLWSS-----------------CGDERIIVFTTNHKE-  320 (436)
Q Consensus       277 r~~~~~~-----~~~~-------------~~~~~s~LL~~ldg~~~~-----------------~~~~~ivI~TTN~~~-  320 (436)
                      .......     .+..             .....--+++.++.+...                 ...++.+|++||.++ 
T Consensus       232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~  311 (854)
T 1qvr_A          232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEY  311 (854)
T ss_dssp             ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHH
T ss_pred             eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHH
Confidence            1111000     0000             000000112222222100                 012467888888775 


Q ss_pred             ---CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823          321 ---RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG  355 (436)
Q Consensus       321 ---~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~  355 (436)
                         .+|++|.|  ||+. |.++.|+.+++..|++.++.
T Consensus       312 ~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~  346 (854)
T 1qvr_A          312 REIEKDPALER--RFQP-VYVDEPTVEETISILRGLKE  346 (854)
T ss_dssp             HHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHH
T ss_pred             hhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhh
Confidence               48999999  9986 99999999999999987664

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=98.89  E-value=7.7e-09  Score=101.77  Aligned_cols=164  Identities=10%  Similarity=0.022  Sum_probs=95.6

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhcc----------hhhcccCCC-----------------C--CCCC--------
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLSV----------EMKDRQNDG-----------------A--SVGS--------  286 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~----------~~~~r~~~~-----------------~--~~~~--------  286 (436)
                      ..+.+++||||||||||++++++++++..          .........                 .  ..+.        
T Consensus        43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~  122 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY  122 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence            45678999999999999999999999841          111111000                 0  0000        


Q ss_pred             ------CcceeecceeecccCcc------------cCCCCeEEEEEecCCcCC----CCccccCCCcee-EEEEcCCCCH
Q 013823          287 ------NTKLTLSGILNFIDGLW------------SSCGDERIIVFTTNHKER----IDPALLRPGRMD-VHINMSYCTV  343 (436)
Q Consensus       287 ------~~~~~~s~LL~~ldg~~------------~~~~~~~ivI~TTN~~~~----lD~AllRpGR~d-~~I~~~~p~~  343 (436)
                            ......--++.++|.+.            ......++||+++|..+.    |++++.+  ||+ ..|.|+.++.
T Consensus       123 f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~  200 (318)
T 3te6_A          123 ITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDK  200 (318)
T ss_dssp             HHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCH
T ss_pred             HHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCH
Confidence                  01111222455555542            011235789999998865    4556666  886 6899999999


Q ss_pred             HHHHHHHHHHhcccCCC-------CC-----------cHHHHH-hhhh-cCCCCHHHHHHHHh----ccCCHHHHHHHHH
Q 013823          344 HGFKVLASNYLGIKGKS-------HS-----------LFGEIE-GLIQ-STDVTPAEVAEELM----KADDADVALEGLV  399 (436)
Q Consensus       344 ~~r~~i~~~~l~~~~~~-------~~-----------~~~~i~-~l~~-~~~~tpaei~~~l~----~~~~~~~al~~l~  399 (436)
                      ++...|+++-+......       +.           ..+... .+.. ...++++-|.-+..    .++|+..|++-+.
T Consensus       201 ~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr  280 (318)
T 3te6_A          201 NELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICE  280 (318)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHH
Confidence            99999998877543100       00           000000 0000 01256665543333    3689999999988


Q ss_pred             HHHHHHHHHh
Q 013823          400 NFLKRKRIQA  409 (436)
Q Consensus       400 ~~l~~~~~~~  409 (436)
                      .+++....+.
T Consensus       281 ~A~~~ae~e~  290 (318)
T 3te6_A          281 AAVEISKKDF  290 (318)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8777665543

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.89  E-value=2e-09  Score=107.52  Aligned_cols=132  Identities=16%  Similarity=0.203  Sum_probs=87.3

Q ss_pred             cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh-----------cchhhcccC-
Q 013823          212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----------SVEMKDRQN-  279 (436)
Q Consensus       212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----------~~~~~~r~~-  279 (436)
                      ++++|.++..+.+.+.+...+..         ..+++++|+||||||||++++++++.+           +..+..... 
T Consensus        20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~   90 (384)
T 2qby_B           20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR   90 (384)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence            78999999999998877654431         335689999999999999999999987           421111100 


Q ss_pred             -------------------CCC-CCCCC-------------cceeecceeecccCcccC------------CCCeEEEEE
Q 013823          280 -------------------DGA-SVGSN-------------TKLTLSGILNFIDGLWSS------------CGDERIIVF  314 (436)
Q Consensus       280 -------------------~~~-~~~~~-------------~~~~~s~LL~~ldg~~~~------------~~~~~ivI~  314 (436)
                                         ... ..+..             .... --+++.+|.+...            ...++.+|+
T Consensus        91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~  169 (384)
T 2qby_B           91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIM  169 (384)
T ss_dssp             HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEE
T ss_pred             cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCCCceeHHHHhcCCcceEEEE
Confidence                               000 00000             0000 0122222222110            003578999


Q ss_pred             ecCCc---CCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823          315 TTNHK---ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG  355 (436)
Q Consensus       315 TTN~~---~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~  355 (436)
                      |||.+   +.+++++.+  ||...|+|+.++.++...++...+.
T Consensus       170 ~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~  211 (384)
T 2qby_B          170 ISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAE  211 (384)
T ss_dssp             ECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred             EECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHH
Confidence            99987   688999998  9878999999999999999998875

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=98.88  E-value=7.5e-09  Score=102.49  Aligned_cols=44  Identities=16%  Similarity=0.020  Sum_probs=38.0

Q ss_pred             CeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHh
Q 013823          308 DERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL  354 (436)
Q Consensus       308 ~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l  354 (436)
                      ...++|++||.++.++|++++  |+ ..++|+.|+.++...++....
T Consensus       137 ~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~  180 (334)
T 1a5t_A          137 AETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV  180 (334)
T ss_dssp             TTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC
T ss_pred             CCeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc
Confidence            458889999999999999999  88 479999999999888877765

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.85  E-value=5.5e-09  Score=104.25  Aligned_cols=138  Identities=17%  Similarity=0.062  Sum_probs=86.0

Q ss_pred             CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh----cchhhcccCCCCC--
Q 013823          210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----SVEMKDRQNDGAS--  283 (436)
Q Consensus       210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~r~~~~~~--  283 (436)
                      .+++++|.++..+.|.+.+...+..       +.+..+.++|+||||||||++++++++.+    +..+.........  
T Consensus        15 ~p~~l~gr~~~~~~l~~~l~~~~~~-------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~   87 (389)
T 1fnn_A           15 VPKRLPHREQQLQQLDILLGNWLRN-------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF   87 (389)
T ss_dssp             CCSCCTTCHHHHHHHHHHHHHHHHS-------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred             CCCCCCChHHHHHHHHHHHHHHHcC-------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence            3478999999999998877654432       11112379999999999999999999988    3211111100000  


Q ss_pred             -----------------CCCCc--------------ceeecceeecccCc-----------ccC-CC---CeEEEEEecC
Q 013823          284 -----------------VGSNT--------------KLTLSGILNFIDGL-----------WSS-CG---DERIIVFTTN  317 (436)
Q Consensus       284 -----------------~~~~~--------------~~~~s~LL~~ldg~-----------~~~-~~---~~~ivI~TTN  317 (436)
                                       .+...              ....--++++++.+           ... ..   .++.+|++||
T Consensus        88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~  167 (389)
T 1fnn_A           88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGH  167 (389)
T ss_dssp             HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEES
T ss_pred             HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEEC
Confidence                             00000              00000122222221           000 01   2578889999


Q ss_pred             Cc---CCCCccccCCCceeE-EEEcCCCCHHHHHHHHHHHhcc
Q 013823          318 HK---ERIDPALLRPGRMDV-HINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       318 ~~---~~lD~AllRpGR~d~-~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                      .+   +.+++.+.+  ||.. .|+|+.++.++...++...+..
T Consensus       168 ~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~  208 (389)
T 1fnn_A          168 NDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKA  208 (389)
T ss_dssp             STHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHH
T ss_pred             CchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHh
Confidence            88   678888888  8875 8999999999999998887753

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=98.85  E-value=3.8e-09  Score=110.23  Aligned_cols=44  Identities=18%  Similarity=0.234  Sum_probs=33.6

Q ss_pred             EEEEEecCCcCC---CCccccCCCceeEEEEcCCCCH-HHHHHHHHHHhc
Q 013823          310 RIIVFTTNHKER---IDPALLRPGRMDVHINMSYCTV-HGFKVLASNYLG  355 (436)
Q Consensus       310 ~ivI~TTN~~~~---lD~AllRpGR~d~~I~~~~p~~-~~r~~i~~~~l~  355 (436)
                      .++|+|||.+..   +.+|+++  ||..+|++|+|+. +++..|+.....
T Consensus       150 ~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~  197 (500)
T 3nbx_X          150 RLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQD  197 (500)
T ss_dssp             CEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred             hhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccc
Confidence            367888886322   3459999  9999999999998 678888877653

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=98.79  E-value=3e-09  Score=101.37  Aligned_cols=52  Identities=19%  Similarity=0.261  Sum_probs=37.1

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+|++++|.....+.+.+.+....           ..+.++||+||||||||++|+++++.+.
T Consensus         3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A            3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            478999999998888877666432           2347899999999999999999999875

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.75  E-value=4.7e-09  Score=104.25  Aligned_cols=134  Identities=13%  Similarity=0.131  Sum_probs=83.3

Q ss_pred             CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh------cchhhcccC--
Q 013823          208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL------SVEMKDRQN--  279 (436)
Q Consensus       208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l------~~~~~~r~~--  279 (436)
                      ...+++++|.++..+.+.+.+...+.         ...++.++|+||||||||++++++++.+      +........  
T Consensus        16 ~~~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~   86 (386)
T 2qby_A           16 DYIPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ   86 (386)
T ss_dssp             SCCCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred             ccCCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence            34558899999988888775542221         1345689999999999999999999987      411110000  


Q ss_pred             -------------------CCCCCC-------------CC------------------cceeecceeecccCcccCCCCe
Q 013823          280 -------------------DGASVG-------------SN------------------TKLTLSGILNFIDGLWSSCGDE  309 (436)
Q Consensus       280 -------------------~~~~~~-------------~~------------------~~~~~s~LL~~ldg~~~~~~~~  309 (436)
                                         ......             ..                  ....+..|+..++..   .+.+
T Consensus        87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~---~~~~  163 (386)
T 2qby_A           87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV---NKSK  163 (386)
T ss_dssp             HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC---CC--
T ss_pred             CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc---CCCe
Confidence                               000000             00                  000111111112111   1335


Q ss_pred             EEEEEecCCc---CCCCccccCCCcee-EEEEcCCCCHHHHHHHHHHHhc
Q 013823          310 RIIVFTTNHK---ERIDPALLRPGRMD-VHINMSYCTVHGFKVLASNYLG  355 (436)
Q Consensus       310 ~ivI~TTN~~---~~lD~AllRpGR~d-~~I~~~~p~~~~r~~i~~~~l~  355 (436)
                      +.+|++||.+   +.+++++.+  ||. ..|+++.++.++...++...+.
T Consensus       164 ~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~  211 (386)
T 2qby_A          164 ISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQ  211 (386)
T ss_dssp             EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred             EEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence            7888999977   468888888  775 5899999999999999988765

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=98.74  E-value=8.4e-09  Score=114.54  Aligned_cols=135  Identities=19%  Similarity=0.242  Sum_probs=84.9

Q ss_pred             cccccChhHHHHHHHHHHHHHhhHHHHHHhCCC----CcceeeEeCCCCCChhHHHHHHHHHh---cchhhcccCCCCC-
Q 013823          212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYL---SVEMKDRQNDGAS-  283 (436)
Q Consensus       212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~----~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~r~~~~~~-  283 (436)
                      +.|+|.++.++.|...+....        .|..    +..++||+||||||||++|++||+.+   +..+......... 
T Consensus       558 ~~viG~~~a~~~l~~~i~~~~--------~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~  629 (854)
T 1qvr_A          558 KRVVGQDEAIRAVADAIRRAR--------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME  629 (854)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHG--------GGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCS
T ss_pred             cccCCcHHHHHHHHHHHHHHh--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccc
Confidence            567888888888877765322        2221    12479999999999999999999988   3222211111000 


Q ss_pred             ---------------------------------------CCCCcceeecceeecccCcccC--C-----CCeEEEEEecC
Q 013823          284 ---------------------------------------VGSNTKLTLSGILNFIDGLWSS--C-----GDERIIVFTTN  317 (436)
Q Consensus       284 ---------------------------------------~~~~~~~~~s~LL~~ldg~~~~--~-----~~~~ivI~TTN  317 (436)
                                                             .+.......+.|+..||.-.-.  .     -.+.+||+|||
T Consensus       630 ~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn  709 (854)
T 1qvr_A          630 KHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSN  709 (854)
T ss_dssp             SGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECC
T ss_pred             hhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecC
Confidence                                                   0001111223344444422100  0     02478999999


Q ss_pred             C--------------------------cCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          318 H--------------------------KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       318 ~--------------------------~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                      .                          ...+.|+|+.  |||..+.|++|+.+++..|+..++..
T Consensus       710 ~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~  772 (854)
T 1qvr_A          710 LGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSY  772 (854)
T ss_dssp             TTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred             cChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHH
Confidence            7                          2345677776  99999999999999999999998853

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.68  E-value=1.2e-08  Score=102.81  Aligned_cols=92  Identities=18%  Similarity=0.263  Sum_probs=61.2

Q ss_pred             hCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCC------------------CC--CC-c------c--ee
Q 013823          241 VGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGAS------------------VG--SN-T------K--LT  291 (436)
Q Consensus       241 ~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~------------------~~--~~-~------~--~~  291 (436)
                      ++++.++.++|+|||||||||+++++|+.++............                  ..  .. .      .  ..
T Consensus       164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~~~r~l~~~~~~~~  243 (377)
T 1svm_A          164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINN  243 (377)
T ss_dssp             HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHH
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHHHHhhccccCcchH
Confidence            4778888999999999999999999999876322211100000                  00  00 0      0  01


Q ss_pred             ecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCC
Q 013823          292 LSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSY  340 (436)
Q Consensus       292 ~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~  340 (436)
                      .+.+.+.+||.       +.|+++|||++.+ ++++||||++..+...+
T Consensus       244 ~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~  284 (377)
T 1svm_A          244 LDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP  284 (377)
T ss_dssp             HHTTHHHHHCS-------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred             HHHHHHHhcCC-------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence            12344444442       4578899999999 79999999999888766

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=98.67  E-value=1.6e-08  Score=99.03  Aligned_cols=100  Identities=13%  Similarity=0.189  Sum_probs=66.8

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc------chhhcccCCC--CC----------------CC-----------CCcce
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS------VEMKDRQNDG--AS----------------VG-----------SNTKL  290 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~------~~~~~r~~~~--~~----------------~~-----------~~~~~  290 (436)
                      ...||||||||||||++|+++|+.++      .++......+  ..                .+           .....
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~   97 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ   97 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHH
Confidence            35799999999999999999998642      1221111111  00                00           00111


Q ss_pred             eecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHh
Q 013823          291 TLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL  354 (436)
Q Consensus       291 ~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l  354 (436)
                      ..+.||..|+.-    .+..++|++||.++.+.|++++  |   .++|+.|+.++....+...+
T Consensus        98 a~naLLk~LEep----~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~  152 (305)
T 2gno_A           98 AANAFLKALEEP----PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI  152 (305)
T ss_dssp             HHHHTHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC----CCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence            223355555442    3457888888999999999999  8   88999999999888877765

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=98.59  E-value=6.4e-08  Score=94.61  Aligned_cols=48  Identities=19%  Similarity=0.241  Sum_probs=37.8

Q ss_pred             ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +++|.....+.+.+.+....           ..+.++||+||||||||++|++|++...
T Consensus         3 ~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~   50 (304)
T 1ojl_A            3 HMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSA   50 (304)
T ss_dssp             CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred             CcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence            57788777787777665432           2356899999999999999999999763

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.56  E-value=8.8e-08  Score=116.10  Aligned_cols=45  Identities=13%  Similarity=0.130  Sum_probs=40.0

Q ss_pred             eEEEEEecCCcC-----CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          309 ERIIVFTTNHKE-----RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       309 ~~ivI~TTN~~~-----~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                      ++.+|+|||+|.     .|||+|+|  || ..|.++.|+.+++..|+..++..
T Consensus      1384 ~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A         1384 RIHIVGACNPPTDPGRIPMSERFTR--HA-AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp             SEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEECCCCTTTHHHHHHHHHHHH
T ss_pred             CEEEEEecCCCccCCCccCChhhhh--ee-eEEEeCCCCHHHHHHHHHHHHHH
Confidence            368999999995     89999999  99 78999999999999999888753

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=98.52  E-value=1.9e-08  Score=87.30  Aligned_cols=47  Identities=21%  Similarity=0.261  Sum_probs=35.6

Q ss_pred             ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      +++|.....+.+.+.+....           .....+||+||||||||++|++|++..
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a-----------~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLS-----------ETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHT-----------TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            46777777777777665332           234679999999999999999999986

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.44  E-value=2.1e-07  Score=83.15  Aligned_cols=59  Identities=20%  Similarity=0.287  Sum_probs=42.4

Q ss_pred             CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+.+|++++......+.+.+.+..+..      .+..+.+++++|+||||||||+|++++|+.+.
T Consensus         5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A            5 WNANLDTYHPKNVSQNRALLTIRVFVH------NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             TTCCSSSCCCCSHHHHHHHHHHHHHHH------SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             hhCccccccCCCHHHHHHHHHHHHHHH------hccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            356899988754444445455554442      33344568899999999999999999999873

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=98.37  E-value=3.8e-07  Score=87.26  Aligned_cols=28  Identities=29%  Similarity=0.542  Sum_probs=24.8

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +++++++||||||||||++|.|||+.++
T Consensus       102 ~~~n~~~l~GppgtGKt~~a~ala~~~~  129 (267)
T 1u0j_A          102 GKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence            4567899999999999999999999754

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.33  E-value=1.8e-07  Score=99.98  Aligned_cols=53  Identities=34%  Similarity=0.340  Sum_probs=43.4

Q ss_pred             ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ...+|..|++++|.+.+++.|...+.               ....++|+||||||||++|++||+.+.
T Consensus        33 ~~~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           33 IEVPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             SCCCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             ccccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            34567889999999988877755443               235899999999999999999999875

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.19  E-value=2e-06  Score=78.07  Aligned_cols=58  Identities=24%  Similarity=0.374  Sum_probs=40.7

Q ss_pred             CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCC-CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA-WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~-~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.+|+++++.....+.+.+.+..++...      ... .+++++|+||||||||++++++++++.
T Consensus        21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           21 RASLSDVDLNDDGRIKAIRFAERFVAEY------EPGKKMKGLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             CCCTTSSCCSSHHHHHHHHHHHHHHHHC------CSSCCCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cCCHhhccCCChhHHHHHHHHHHHHHHh------hhccCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            5689999886644444445555444321      111 237899999999999999999999874

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=98.14  E-value=1.7e-06  Score=79.47  Aligned_cols=30  Identities=27%  Similarity=0.488  Sum_probs=27.3

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++|.++++|+|||||||||++|.++|+.+.
T Consensus        54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             cCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            467778899999999999999999999986

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=98.11  E-value=6.6e-07  Score=77.25  Aligned_cols=48  Identities=8%  Similarity=0.014  Sum_probs=36.5

Q ss_pred             ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +++|.....+.+.+.+..+.           ....++||+||||||||++|+++++..+
T Consensus         5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~   52 (143)
T 3co5_A            5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT   52 (143)
T ss_dssp             ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred             CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence            46778788888877776443           2346799999999999999999998876

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=98.08  E-value=4.9e-06  Score=83.44  Aligned_cols=53  Identities=17%  Similarity=0.202  Sum_probs=40.1

Q ss_pred             CCcccccChhHHHHHHHHH-HHHHhhHHHHHHhCC-CCcceeeE--eCCCCCChhHHHHHHHHHh
Q 013823          210 TFDTLAMDPELKQMILDDL-DRFLRRKEFYRRVGK-AWKRGYLL--YGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       210 ~~~~i~g~~~~k~~i~~~l-~~~l~~~~~~~~~g~-~~~rg~LL--~GPpGtGKT~la~aiA~~l  270 (436)
                      ..+.++|-++..+.|.+.+ .....        |. ..++.++|  +||||||||++++++++.+
T Consensus        20 ~p~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           20 IPPELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CCSSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            3477899998888887776 53322        10 23467899  9999999999999999876

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=98.06  E-value=5.2e-06  Score=81.16  Aligned_cols=58  Identities=29%  Similarity=0.424  Sum_probs=40.8

Q ss_pred             CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.+|+++.+....+..+.+.+..++..      .+.....+++||||||||||+||.+||+++.
T Consensus       120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~------~~~~~~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          120 HIHLSDIDVNNASRMEAFSAILDFVEQ------YPSAEQKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             SCCGGGSCCCSHHHHHHHHHHHHHHHH------CSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             hCCHhhCcCCChHHHHHHHHHHHHHHh------ccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            468999987654444444444444432      2212357999999999999999999999775

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.84  E-value=7.6e-06  Score=95.59  Aligned_cols=63  Identities=22%  Similarity=0.204  Sum_probs=44.2

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhh----------HHHHHH------hC------------CCCcceeeEeCCCCCChh
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRR----------KEFYRR------VG------------KAWKRGYLLYGPPGTGKS  260 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~----------~~~~~~------~g------------~~~~rg~LL~GPpGtGKT  260 (436)
                      .+|++|.|.++.|+.+.+.+..++..          ++.++.      .|            .|..|.+|||||||||||
T Consensus      1017 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT 1096 (1706)
T 3cmw_A         1017 SSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 1096 (1706)
T ss_dssp             -------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHH
T ss_pred             ceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChH
Confidence            68999999999999999999999854          445554      22            333444999999999999


Q ss_pred             HHHHHHHHHhc
Q 013823          261 SLIAAMANYLS  271 (436)
Q Consensus       261 ~la~aiA~~l~  271 (436)
                      +||+++|.+..
T Consensus      1097 ~la~~~~~~~~ 1107 (1706)
T 3cmw_A         1097 TLTLQVIAAAQ 1107 (1706)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999998653

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=97.52  E-value=0.00011  Score=89.52  Aligned_cols=104  Identities=17%  Similarity=0.182  Sum_probs=64.7

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC-----------------------CCCCCcceeeccee------
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA-----------------------SVGSNTKLTLSGIL------  296 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~-----------------------~~~~~~~~~~s~LL------  296 (436)
                      ..|.+++||||||||++++++|+.+|..+..-...+.                       +.+.....+++.+-      
T Consensus       645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~evLs~l~~~l~~i  724 (2695)
T 4akg_A          645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDEKVLSAVSANIQQI  724 (2695)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHH
T ss_pred             CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcChHHHHHHHHHHHHH
Confidence            4789999999999999999999999954433322211                       01111112222221      


Q ss_pred             -ecc---------cCcccCCCCeEEEEEecC----CcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHH
Q 013823          297 -NFI---------DGLWSSCGDERIIVFTTN----HKERIDPALLRPGRMDVHINMSYCTVHGFKVLASN  352 (436)
Q Consensus       297 -~~l---------dg~~~~~~~~~ivI~TTN----~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~  352 (436)
                       +.+         +|-.-.......|++|.|    ....|++++.+  || +.|.|..|+.+...++.-.
T Consensus       725 ~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~ei~l~  791 (2695)
T 4akg_A          725 QNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAEMILQ  791 (2695)
T ss_dssp             HHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHHHHHH
T ss_pred             HHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHHHHHH
Confidence             111         111001112345788888    45579999999  99 7899999999887766533

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.47  E-value=0.0003  Score=86.47  Aligned_cols=44  Identities=9%  Similarity=0.160  Sum_probs=36.5

Q ss_pred             eEEEEEecCCc-----CCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823          309 ERIIVFTTNHK-----ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG  355 (436)
Q Consensus       309 ~~ivI~TTN~~-----~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~  355 (436)
                      ++.+|+|.|.|     ..|+++|+|  ||.. |.+++|+.++...|+..++.
T Consensus      1422 d~~~vaamnPp~~gGr~~l~~Rf~r--~F~v-i~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A         1422 KIQFVGACNPPTDAGRVQLTHRFLR--HAPI-LLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp             SEEEEEEECCTTSTTCCCCCHHHHT--TCCE-EECCCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCCCCccCCHHHHh--hceE-EEeCCCCHHHHHHHHHHHHH
Confidence            35688999988     369999999  9964 89999999999888776653

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.29  E-value=0.00012  Score=65.15  Aligned_cols=30  Identities=23%  Similarity=0.249  Sum_probs=26.2

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMK  275 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~  275 (436)
                      ++.++|.|||||||||+++.+|..++..+.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i   34 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILY   34 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            457899999999999999999999995544

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.26  E-value=0.00013  Score=64.95  Aligned_cols=31  Identities=29%  Similarity=0.339  Sum_probs=26.3

Q ss_pred             CCCcceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          243 KAWKRGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       243 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      ...+.-++|.||||+||||+++.++..++..
T Consensus         2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~   32 (193)
T 2rhm_A            2 MQTPALIIVTGHPATGKTTLSQALATGLRLP   32 (193)
T ss_dssp             CSCCEEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence            3445678999999999999999999998843

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.23  E-value=0.00017  Score=63.63  Aligned_cols=26  Identities=27%  Similarity=0.455  Sum_probs=23.7

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      +-++|.||||+||||+++++|..++.
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l~~   29 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVLPE   29 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            56899999999999999999999873

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=97.23  E-value=9.9e-05  Score=75.75  Aligned_cols=35  Identities=14%  Similarity=0.058  Sum_probs=23.5

Q ss_pred             eEEEEEecCCcC-----------CCCccccCCCceeEEE-EcCCCCHHH
Q 013823          309 ERIIVFTTNHKE-----------RIDPALLRPGRMDVHI-NMSYCTVHG  345 (436)
Q Consensus       309 ~~ivI~TTN~~~-----------~lD~AllRpGR~d~~I-~~~~p~~~~  345 (436)
                      ...||+|+|..+           .|+++++.  |||..+ .+++|+.+.
T Consensus       339 rf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~  385 (506)
T 3f8t_A          339 RCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGE  385 (506)
T ss_dssp             CCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC------
T ss_pred             CeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhH
Confidence            468999999865           78899999  998754 467777654

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.23  E-value=0.00017  Score=65.26  Aligned_cols=31  Identities=32%  Similarity=0.297  Sum_probs=26.4

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLSVEMK  275 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~  275 (436)
                      ..+.++|.|||||||||+++++|..++..+.
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i   54 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFI   54 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence            3457999999999999999999999985443

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.21  E-value=0.00016  Score=62.79  Aligned_cols=26  Identities=27%  Similarity=0.374  Sum_probs=23.6

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      ....++|+||+|+|||+|++++++.+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            34679999999999999999999987

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.13  E-value=0.00024  Score=62.29  Aligned_cols=28  Identities=39%  Similarity=0.657  Sum_probs=24.7

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      .-+.|.|||||||||+++.+|+.++..+
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~   32 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQLNMEF   32 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            4588999999999999999999988443

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=97.12  E-value=0.00062  Score=62.11  Aligned_cols=35  Identities=14%  Similarity=0.030  Sum_probs=28.9

Q ss_pred             EEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHH
Q 013823          310 RIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGF  346 (436)
Q Consensus       310 ~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r  346 (436)
                      .-||++|+.++.||.+++.  |++.+++++.|....+
T Consensus       124 ~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~~~~  158 (199)
T 2r2a_A          124 IDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKMGMR  158 (199)
T ss_dssp             CEEEEEESCGGGBCHHHHT--TEEEEEEEEECSSCCE
T ss_pred             eEEEEECCCHHHHhHHHHH--HhheEEEEcCcccCcc
Confidence            4578888889999999888  9999999988765443

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.10  E-value=0.00022  Score=62.93  Aligned_cols=28  Identities=32%  Similarity=0.440  Sum_probs=24.6

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVEMK  275 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~~~  275 (436)
                      .++|.|||||||||++++||..++..+.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~~~~   33 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDLVFL   33 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence            4889999999999999999999985443

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.09  E-value=0.00024  Score=61.90  Aligned_cols=28  Identities=25%  Similarity=0.235  Sum_probs=24.4

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVEMK  275 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~~~  275 (436)
                      -++|.||||+||||+++.+|..++..+.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i   30 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELKYPII   30 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHCCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeee
Confidence            4789999999999999999999985543

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.08  E-value=0.00056  Score=65.92  Aligned_cols=26  Identities=38%  Similarity=0.556  Sum_probs=23.2

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      .+.-++|.||||+||||+++.++..+
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34568899999999999999999987

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.05  E-value=0.00034  Score=61.89  Aligned_cols=29  Identities=31%  Similarity=0.469  Sum_probs=25.3

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      ++.++|.||||+|||++++++|..++...
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~   39 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASKSGLKY   39 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHhCCeE
Confidence            35699999999999999999999998443

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.04  E-value=0.00029  Score=61.90  Aligned_cols=26  Identities=31%  Similarity=0.392  Sum_probs=22.9

Q ss_pred             cceeeEeCCCCCChhHHHHHHHH-Hhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMAN-YLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~-~l~  271 (436)
                      |.-++|.||||+||||+++.++. .++
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~   28 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPG   28 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCC
Confidence            34688999999999999999999 566

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.01  E-value=0.00031  Score=62.33  Aligned_cols=27  Identities=37%  Similarity=0.564  Sum_probs=24.2

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      -++|.|+||+|||++++.+|..+|..+
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg~~~   30 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKALGVGL   30 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCCE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence            488999999999999999999999544

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.97  E-value=0.00029  Score=62.79  Aligned_cols=29  Identities=38%  Similarity=0.487  Sum_probs=24.4

Q ss_pred             CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          243 KAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       243 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +..+.-+.|.||||+||||++++||+.++
T Consensus         6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~   34 (191)
T 1zp6_A            6 DLGGNILLLSGHPGSGKSTIAEALANLPG   34 (191)
T ss_dssp             CCTTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHhccC
Confidence            34455688999999999999999999764

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.96  E-value=0.00042  Score=61.82  Aligned_cols=28  Identities=32%  Similarity=0.470  Sum_probs=24.3

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHH-hcch
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANY-LSVE  273 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~-l~~~  273 (436)
                      +..++|.|+|||||||+++.+|.. +|..
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~   38 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAELDGFQ   38 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHHSTTEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence            345899999999999999999999 6743

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.93  E-value=0.00028  Score=69.15  Aligned_cols=30  Identities=20%  Similarity=0.288  Sum_probs=25.0

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |++.++.+||+||||||||+||.++|...+
T Consensus       119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G  148 (331)
T 2vhj_A          119 HRYASGMVIVTGKGNSGKTPLVHALGEALG  148 (331)
T ss_dssp             EEEESEEEEEECSCSSSHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHHHHhCC
Confidence            455566789999999999999999998643

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.93  E-value=0.00043  Score=61.39  Aligned_cols=25  Identities=20%  Similarity=0.356  Sum_probs=23.0

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-++|.||||+||||+++.+|..++
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4588999999999999999999887

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.93  E-value=0.0005  Score=63.62  Aligned_cols=29  Identities=21%  Similarity=0.389  Sum_probs=25.7

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      ..++-++|.||||+||+|.|+.||..+|+
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~   55 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHF   55 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence            44567889999999999999999999994

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.92  E-value=0.00039  Score=60.80  Aligned_cols=29  Identities=34%  Similarity=0.438  Sum_probs=25.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVEMK  275 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~  275 (436)
                      ..++|.|+|||||||+++.+|..+|.++.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg~~~i   36 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALKLEVL   36 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            46899999999999999999999995543

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.91  E-value=0.00056  Score=64.40  Aligned_cols=27  Identities=22%  Similarity=0.283  Sum_probs=24.1

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+.-++|.||||+||||+++.++..++
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            345689999999999999999999986

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.90  E-value=0.00046  Score=61.16  Aligned_cols=27  Identities=30%  Similarity=0.660  Sum_probs=23.8

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      .-++|.|||||||||+++.+|..++..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~~l~~~   31 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQELGFK   31 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            358899999999999999999988843

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.89  E-value=0.00049  Score=61.12  Aligned_cols=27  Identities=22%  Similarity=0.346  Sum_probs=24.1

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      +.-++|.|+|||||||+++.+|..++.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~   29 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKYGY   29 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            345889999999999999999999884

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.87  E-value=0.00058  Score=61.56  Aligned_cols=28  Identities=36%  Similarity=0.622  Sum_probs=24.4

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      .-++|.||||+||||+++.+|..++...
T Consensus        21 ~~I~l~G~~GsGKST~a~~La~~l~~~~   48 (201)
T 2cdn_A           21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQ   48 (201)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence            3588999999999999999999998543

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.86  E-value=0.00038  Score=61.71  Aligned_cols=24  Identities=33%  Similarity=0.534  Sum_probs=22.3

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -++|.||||+||||+++.++..++
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            378999999999999999999887

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.86  E-value=0.00059  Score=61.66  Aligned_cols=29  Identities=24%  Similarity=0.496  Sum_probs=24.9

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      +.-+.|.||||+||||++++|++.+|...
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~   57 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVADETGLEF   57 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHCCEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCeE
Confidence            45588999999999999999999988443

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.86  E-value=0.00049  Score=64.98  Aligned_cols=28  Identities=25%  Similarity=0.399  Sum_probs=24.3

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVEMK  275 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~~~  275 (436)
                      -++|.|||||||||++++||..++..+.
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~~~~i   30 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETGWPVV   30 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCCEE
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCCCeEE
Confidence            4789999999999999999999985443

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.85  E-value=0.00052  Score=59.51  Aligned_cols=25  Identities=28%  Similarity=0.441  Sum_probs=22.0

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      -++|.||||+||||+++.+ ..+|..
T Consensus         3 ~I~l~G~~GsGKsT~a~~L-~~~g~~   27 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL-KERGAK   27 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH-HHTTCE
T ss_pred             EEEEECCCCCCHHHHHHHH-HHCCCc
Confidence            4789999999999999999 888843

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.85  E-value=0.00061  Score=61.48  Aligned_cols=30  Identities=27%  Similarity=0.325  Sum_probs=25.7

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMK  275 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~  275 (436)
                      +.-++|.||||+||||+++.|+..+|....
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i   47 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFI   47 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHTCCEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCEEE
Confidence            346899999999999999999999985443

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.83  E-value=0.0005  Score=60.69  Aligned_cols=29  Identities=21%  Similarity=0.263  Sum_probs=21.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVEMK  275 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~  275 (436)
                      .-++|.|+||+||||+++.+|..++..+.
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i   34 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHERLPGSFV   34 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence            45889999999999999999999985543

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.83  E-value=0.00061  Score=63.67  Aligned_cols=27  Identities=26%  Similarity=0.581  Sum_probs=23.9

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      +.-+.|.||||+||||++++||..+|.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg~   53 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFGL   53 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            456889999999999999999988873

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.83  E-value=0.00095  Score=82.16  Aligned_cols=107  Identities=20%  Similarity=0.136  Sum_probs=63.8

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC-----------------------CCCCCcceeecceeecc---
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA-----------------------SVGSNTKLTLSGILNFI---  299 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~-----------------------~~~~~~~~~~s~LL~~l---  299 (436)
                      ..|..+.||+|||||.+++.+|+.+|.....-.....                       +.+.....+++.+...|   
T Consensus       604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~~vLSvv~~qi~~I  683 (3245)
T 3vkg_A          604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTI  683 (3245)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCHHHHHHHHHHHHHH
Confidence            3567899999999999999999999943322211111                       00111111222211111   


Q ss_pred             -------------c-CcccCCCCeEEEEEecC----CcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823          300 -------------D-GLWSSCGDERIIVFTTN----HKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG  355 (436)
Q Consensus       300 -------------d-g~~~~~~~~~ivI~TTN----~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~  355 (436)
                                   + |-.-.-....-|++|.|    ....|+++|..  || +.|.|+.||.+...++.-.-.|
T Consensus       684 ~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~ei~L~s~G  754 (3245)
T 3vkg_A          684 QVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIAQVMLYSQG  754 (3245)
T ss_dssp             HHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHHHHHHHTTT
T ss_pred             HHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHHHHHHHHcc
Confidence                         1 21001112356788888    34589999999  88 7799999999887766544333

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.82  E-value=0.00058  Score=59.67  Aligned_cols=28  Identities=21%  Similarity=0.366  Sum_probs=24.5

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      +-++|.|+||+|||++++.+|..++..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~   30 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEF   30 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence            3588999999999999999999998543

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.81  E-value=0.00061  Score=60.36  Aligned_cols=29  Identities=21%  Similarity=0.294  Sum_probs=25.1

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      .+.-++|.|||||||||+++.+|..++..
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~   33 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDFGWV   33 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            34568899999999999999999998843

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.80  E-value=0.00071  Score=59.45  Aligned_cols=28  Identities=32%  Similarity=0.560  Sum_probs=24.3

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      .-++|.||||+||||+++.++..+|...
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~   36 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAHQLHAAF   36 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhhCcEE
Confidence            4588999999999999999999888443

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.77  E-value=0.00062  Score=62.04  Aligned_cols=24  Identities=25%  Similarity=0.481  Sum_probs=22.4

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      ++|.||||+||||+++.+|..++.
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~~~   26 (216)
T 3dl0_A            3 LVLMGLPGAGKGTQGERIVEKYGI   26 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            789999999999999999999984

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.77  E-value=0.00066  Score=60.50  Aligned_cols=28  Identities=18%  Similarity=0.330  Sum_probs=24.6

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      +.-++|.|||||||||+++.+|..++..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~   36 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQKYGYT   36 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            3568899999999999999999999843

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.77  E-value=0.0006  Score=62.86  Aligned_cols=27  Identities=19%  Similarity=0.459  Sum_probs=24.3

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      +.-++|.||||+||||+++.||..++.
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~l~~   33 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTHFEL   33 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            356899999999999999999999984

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.77  E-value=0.00063  Score=62.44  Aligned_cols=27  Identities=15%  Similarity=0.316  Sum_probs=24.3

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      +.-++|.||||+||||+++.||..++.
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~l~~   31 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTKYQL   31 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            356899999999999999999999984

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.76  E-value=0.00058  Score=62.60  Aligned_cols=27  Identities=22%  Similarity=0.480  Sum_probs=24.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      .-++|.||||+||||+++.||..++..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l~~~   32 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEYGLA   32 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCce
Confidence            458899999999999999999999843

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.75  E-value=0.00066  Score=61.79  Aligned_cols=25  Identities=24%  Similarity=0.486  Sum_probs=22.8

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcch
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      ++|.||||+||||+++.+|..++..
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~~~~   27 (216)
T 3fb4_A            3 IVLMGLPGAGKGTQAEQIIEKYEIP   27 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCc
Confidence            6889999999999999999999843

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.75  E-value=0.0021  Score=62.23  Aligned_cols=48  Identities=25%  Similarity=0.211  Sum_probs=37.3

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..-+.++|-++..+.|.+.+..           |    +.++++||+|+|||+|++.+++..+
T Consensus         9 ~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~   56 (350)
T 2qen_A            9 TRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP   56 (350)
T ss_dssp             CSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC
Confidence            3446678888877777665431           2    6799999999999999999998764

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.75  E-value=0.00078  Score=61.69  Aligned_cols=27  Identities=26%  Similarity=0.536  Sum_probs=24.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      .-++|.||||+||||+++.+|..++..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~~l~~~   31 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQERFHAA   31 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCce
Confidence            458899999999999999999999843

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.74  E-value=0.00071  Score=60.98  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=23.5

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      .-++|.||||+||||+++.+|..++.
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            45789999999999999999999875

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.73  E-value=0.00068  Score=60.58  Aligned_cols=28  Identities=18%  Similarity=0.361  Sum_probs=24.7

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      +.-++|.||||+||||+++.+|..++..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~   39 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYGFT   39 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHTCE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            3568899999999999999999999843

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.72  E-value=0.00075  Score=60.32  Aligned_cols=25  Identities=28%  Similarity=0.630  Sum_probs=22.7

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcch
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      +.|.||+|+|||||++.|++.+++.
T Consensus         3 i~l~G~nGsGKTTLl~~l~g~l~i~   27 (178)
T 1ye8_A            3 IIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCc
Confidence            6789999999999999999999743

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.71  E-value=0.00065  Score=67.40  Aligned_cols=28  Identities=25%  Similarity=0.535  Sum_probs=25.4

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      ..++|.||||+|||+++++||+.++..+
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            3589999999999999999999999665

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.69  E-value=0.00082  Score=60.72  Aligned_cols=27  Identities=30%  Similarity=0.321  Sum_probs=23.6

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+.-+.|.||+||||||++++||..++
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            345688999999999999999999984

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.69  E-value=0.001  Score=60.34  Aligned_cols=29  Identities=28%  Similarity=0.449  Sum_probs=25.2

Q ss_pred             CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          243 KAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       243 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ...++-++|.||||+||||+++.++..++
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            45566789999999999999999999874

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=96.67  E-value=0.0016  Score=66.85  Aligned_cols=55  Identities=24%  Similarity=0.269  Sum_probs=35.4

Q ss_pred             ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ....|.+|+++  .+++++.+...+. ++..          ..+.+++.||||||||+++.+++..+.
T Consensus        16 ~~~~p~~~~~L--n~~Q~~av~~~~~-~i~~----------~~~~~li~G~aGTGKT~ll~~~~~~l~   70 (459)
T 3upu_A           16 PRGSHMTFDDL--TEGQKNAFNIVMK-AIKE----------KKHHVTINGPAGTGATTLTKFIIEALI   70 (459)
T ss_dssp             -----CCSSCC--CHHHHHHHHHHHH-HHHS----------SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             cccCCCccccC--CHHHHHHHHHHHH-HHhc----------CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            35667788876  6666666544332 2221          123789999999999999999998774

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.67  E-value=0.00078  Score=61.43  Aligned_cols=29  Identities=28%  Similarity=0.201  Sum_probs=24.4

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++.+.-++|+||||+|||+|++.+|..+
T Consensus        19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45555668999999999999999999765

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.67  E-value=0.00088  Score=59.97  Aligned_cols=26  Identities=31%  Similarity=0.599  Sum_probs=23.5

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      +.|.|+|||||||+++.+|+.++..+
T Consensus         3 I~i~G~~GsGKsT~~~~L~~~l~~~~   28 (205)
T 2jaq_A            3 IAIFGTVGAGKSTISAEISKKLGYEI   28 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHCCEE
T ss_pred             EEEECCCccCHHHHHHHHHHhcCCcE
Confidence            67999999999999999999998543

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.67  E-value=0.00089  Score=58.23  Aligned_cols=26  Identities=23%  Similarity=0.317  Sum_probs=23.5

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      ++|.|+||+||||+++.++..++..+
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~l~~~~   28 (168)
T 2pt5_A            3 IYLIGFMCSGKSTVGSLLSRSLNIPF   28 (168)
T ss_dssp             EEEESCTTSCHHHHHHHHHHHHTCCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            78999999999999999999998544

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.65  E-value=0.001  Score=61.59  Aligned_cols=27  Identities=33%  Similarity=0.567  Sum_probs=24.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      ..++|.|||||||||+++.||..++..
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~l~~~   43 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKNFCVC   43 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            458999999999999999999999843

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.64  E-value=0.00089  Score=61.38  Aligned_cols=24  Identities=29%  Similarity=0.595  Sum_probs=22.4

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      ++|.||||+||+|.|+.||..+|+
T Consensus         3 Iil~GpPGsGKgTqa~~La~~~g~   26 (206)
T 3sr0_A            3 LVFLGPPGAGKGTQAKRLAKEKGF   26 (206)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCC
Confidence            678999999999999999999994

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.62  E-value=0.0011  Score=59.74  Aligned_cols=26  Identities=23%  Similarity=0.401  Sum_probs=23.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      .-++|.|||||||||+++.+|..++.
T Consensus        16 ~~I~l~G~~GsGKsT~~~~L~~~~g~   41 (203)
T 1ukz_A           16 SVIFVLGGPGAGKGTQCEKLVKDYSF   41 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence            45889999999999999999999984

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.59  E-value=0.0012  Score=58.61  Aligned_cols=26  Identities=15%  Similarity=0.402  Sum_probs=22.6

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++-+.|.||+|+|||||+++|++.+.
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            35588999999999999999998764

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.58  E-value=0.0012  Score=61.84  Aligned_cols=29  Identities=21%  Similarity=0.356  Sum_probs=25.2

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      .+.-++|.||||+||||+++.++..++..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~   56 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYC   56 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            44568999999999999999999998843

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.57  E-value=0.0012  Score=59.90  Aligned_cols=27  Identities=30%  Similarity=0.297  Sum_probs=23.7

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHH
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      |++.+.-++|+||||+|||+++..+|.
T Consensus        16 gi~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           16 GFAPGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            456666789999999999999999998

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.52  E-value=0.0013  Score=59.13  Aligned_cols=26  Identities=23%  Similarity=0.249  Sum_probs=22.9

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      .+.-+.|.||||+||||+++.|++.+
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            34558899999999999999999987

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=96.51  E-value=0.0031  Score=67.60  Aligned_cols=46  Identities=30%  Similarity=0.467  Sum_probs=30.3

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      ..|-+-.+++.+++.|...+.    .           +.-.|+.||||||||+++..+...
T Consensus       183 ~~~~~~~LN~~Q~~AV~~al~----~-----------~~~~lI~GPPGTGKT~ti~~~I~~  228 (646)
T 4b3f_X          183 LTFFNTCLDTSQKEAVLFALS----Q-----------KELAIIHGPPGTGKTTTVVEIILQ  228 (646)
T ss_dssp             CCCSSTTCCHHHHHHHHHHHH----C-----------SSEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ccccCCCCCHHHHHHHHHHhc----C-----------CCceEEECCCCCCHHHHHHHHHHH
Confidence            344444578888888866543    0           123689999999999866555443

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.51  E-value=0.0012  Score=59.65  Aligned_cols=27  Identities=22%  Similarity=0.284  Sum_probs=23.7

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      +.-+.|.|+|||||||+++.++..++.
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~l~~   36 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEYLKN   36 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            345889999999999999999998874

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.51  E-value=0.0013  Score=60.68  Aligned_cols=25  Identities=28%  Similarity=0.561  Sum_probs=22.8

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcch
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      ++|.||||+||||+++.+|..++..
T Consensus         3 I~l~G~~GsGKsT~a~~La~~lg~~   27 (223)
T 2xb4_A            3 ILIFGPNGSGKGTQGNLVKDKYSLA   27 (223)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCe
Confidence            7899999999999999999998843

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=96.48  E-value=0.0017  Score=63.10  Aligned_cols=45  Identities=24%  Similarity=0.143  Sum_probs=34.4

Q ss_pred             CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.++|-++..+.|.+ +.    .            +.++++||+|+|||+|++.+++.++
T Consensus        11 ~~~~~~gR~~el~~L~~-l~----~------------~~v~i~G~~G~GKT~L~~~~~~~~~   55 (357)
T 2fna_A           11 NRKDFFDREKEIEKLKG-LR----A------------PITLVLGLRRTGKSSIIKIGINELN   55 (357)
T ss_dssp             SGGGSCCCHHHHHHHHH-TC----S------------SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CHHHhcChHHHHHHHHH-hc----C------------CcEEEECCCCCCHHHHHHHHHHhcC
Confidence            44567887776666644 32    1            4799999999999999999998764

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.47  E-value=0.0013  Score=60.07  Aligned_cols=25  Identities=40%  Similarity=0.558  Sum_probs=22.9

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.|||||||||+++.+++.+|
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~g   30 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEALQ   30 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3578999999999999999999987

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.47  E-value=0.0011  Score=60.37  Aligned_cols=25  Identities=20%  Similarity=0.379  Sum_probs=22.9

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcch
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      ++|.||||+||||+++.+|..++..
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~g~~   27 (214)
T 1e4v_A            3 IILLGAPVAGKGTQAQFIMEKYGIP   27 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCe
Confidence            7899999999999999999999843

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.45  E-value=0.0013  Score=60.69  Aligned_cols=28  Identities=21%  Similarity=0.196  Sum_probs=24.2

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      |++...-++|+||||+|||+|+..+|..
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4566667899999999999999999985

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.44  E-value=0.0011  Score=60.49  Aligned_cols=30  Identities=23%  Similarity=0.327  Sum_probs=24.9

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |++...-+.|.||+|+|||||++.||..+-
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~   50 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ   50 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            455556689999999999999999998653

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=96.43  E-value=0.0037  Score=62.75  Aligned_cols=49  Identities=14%  Similarity=0.269  Sum_probs=33.9

Q ss_pred             cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.++|.....+.+.+.+....           +....+|++|++||||+++|++|.....
T Consensus       137 ~~~ig~s~~m~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~  185 (387)
T 1ny5_A          137 EEYVFESPKMKEILEKIKKIS-----------CAECPVLITGESGVGKEVVARLIHKLSD  185 (387)
T ss_dssp             CCCCCCSHHHHHHHHHHHHHT-----------TCCSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred             hhhhhccHHhhHHHHHHHHhc-----------CCCCCeEEecCCCcCHHHHHHHHHHhcC
Confidence            345565555555555554311           2235689999999999999999998764

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.43  E-value=0.0015  Score=58.17  Aligned_cols=24  Identities=38%  Similarity=0.639  Sum_probs=21.3

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -+.|.||||+||||+++.|++.++
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~~~~   27 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAAQLD   27 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcccC
Confidence            478999999999999999998664

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.42  E-value=0.0017  Score=57.71  Aligned_cols=26  Identities=31%  Similarity=0.512  Sum_probs=23.0

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.-++|.|+||+||||+++.+|..++
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            34578999999999999999999886

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.41  E-value=0.0014  Score=59.29  Aligned_cols=26  Identities=23%  Similarity=0.192  Sum_probs=23.1

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.-++|.|+|||||||+++.++..++
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34588999999999999999999876

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.41  E-value=0.003  Score=57.40  Aligned_cols=26  Identities=42%  Similarity=0.600  Sum_probs=22.6

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.-+.|.||+|+|||||+++|++.+.
T Consensus        22 g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           22 RQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            34577999999999999999999875

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=96.41  E-value=0.0029  Score=61.96  Aligned_cols=106  Identities=12%  Similarity=0.047  Sum_probs=61.6

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhcch------hhcccCCCC-----------------------CCCC-Ccceeecc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLSVE------MKDRQNDGA-----------------------SVGS-NTKLTLSG  294 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~------~~~r~~~~~-----------------------~~~~-~~~~~~s~  294 (436)
                      .+..||||||+|+||++.++++++.+...      .........                       ..+. ..+...+.
T Consensus        17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~a   96 (343)
T 1jr3_D           17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQ   96 (343)
T ss_dssp             CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHH
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHH
Confidence            44689999999999999999999866311      011111000                       0000 11122233


Q ss_pred             eeecccCcccCCCCeEEEEEecCCcC------CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          295 ILNFIDGLWSSCGDERIIVFTTNHKE------RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       295 LL~~ldg~~~~~~~~~ivI~TTN~~~------~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      |+..++...    +..++|++|+.++      .+-+++..  |. ..++|..++..+....+...+...
T Consensus        97 Ll~~le~p~----~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l~~~~~~~  158 (343)
T 1jr3_D           97 LLTLTGLLH----DDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRWVAARAKQL  158 (343)
T ss_dssp             HHHHHTTCB----TTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHHHHHHHHHT
T ss_pred             HHHHHhcCC----CCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHHHHHHHHc
Confidence            444444332    3355666555533      45567776  66 578899898888877777766443

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.38  E-value=0.0018  Score=58.94  Aligned_cols=26  Identities=27%  Similarity=0.327  Sum_probs=22.9

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++-+.|.||+|+||||+++.|+..+.
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            44588999999999999999999875

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.37  E-value=0.0017  Score=57.48  Aligned_cols=27  Identities=22%  Similarity=0.357  Sum_probs=23.4

Q ss_pred             eeEeCCCCCChhHHHHHHHHHh---cchhh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYL---SVEMK  275 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l---~~~~~  275 (436)
                      +.|.|+||+||||+++.++..+   |....
T Consensus         3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i   32 (195)
T 2pbr_A            3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVS   32 (195)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence            6799999999999999999988   65443

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.31  E-value=0.0021  Score=56.65  Aligned_cols=25  Identities=32%  Similarity=0.505  Sum_probs=22.3

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHh
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      +.-+.|.|++|+||||+++.++..+
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3457899999999999999999987

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.31  E-value=0.0023  Score=57.44  Aligned_cols=25  Identities=32%  Similarity=0.659  Sum_probs=22.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||+|+||||+++.|++.+.
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhCC
Confidence            4577999999999999999999864

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.31  E-value=0.002  Score=63.06  Aligned_cols=29  Identities=34%  Similarity=0.600  Sum_probs=25.4

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      ++.++|.||+|||||+++..+|..++..+
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~~~i   33 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALPCEL   33 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence            45789999999999999999999998443

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.26  E-value=0.0016  Score=59.96  Aligned_cols=29  Identities=31%  Similarity=0.314  Sum_probs=24.0

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++.+.-++|+||||+|||+++..+|...
T Consensus        19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~   47 (247)
T 2dr3_A           19 GIPERNVVLLSGGPGTGKTIFSQQFLWNG   47 (247)
T ss_dssp             SEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45666678999999999999998887654

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.23  E-value=0.0024  Score=58.13  Aligned_cols=27  Identities=26%  Similarity=0.292  Sum_probs=23.7

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+.-++|.|+||+||||+++.++..++
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            345688999999999999999999886

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.23  E-value=0.0022  Score=60.59  Aligned_cols=30  Identities=30%  Similarity=0.358  Sum_probs=25.8

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMK  275 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~  275 (436)
                      ...+.|.||||+||||+++.+|..+|..+.
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~   77 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFF   77 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence            356999999999999999999999985443

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.22  E-value=0.0025  Score=59.58  Aligned_cols=26  Identities=38%  Similarity=0.471  Sum_probs=23.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      .-+.|.|||||||||+++.||..++.
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~~lg~   35 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLARALGA   35 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            45889999999999999999999883

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.22  E-value=0.0021  Score=57.76  Aligned_cols=26  Identities=35%  Similarity=0.418  Sum_probs=23.5

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      -+.|.||||+||||+++.+|..+|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~   29 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVP   29 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCc
Confidence            57899999999999999999999843

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.22  E-value=0.0019  Score=58.16  Aligned_cols=24  Identities=29%  Similarity=0.351  Sum_probs=21.6

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      -+.|.||+||||||+++.+|+ +|+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~g~   26 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-LGA   26 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-TTC
T ss_pred             EEEEECCCCcCHHHHHHHHHH-CCC
Confidence            378999999999999999999 873

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.20  E-value=0.0017  Score=64.64  Aligned_cols=29  Identities=21%  Similarity=0.259  Sum_probs=24.6

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++..+-++|+||||+|||+|+..+|..+
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45555668999999999999999999875

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.18  E-value=0.0021  Score=57.95  Aligned_cols=25  Identities=28%  Similarity=0.369  Sum_probs=21.9

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      -+.|.|||||||||+++.+|+ +|..
T Consensus         4 ~i~l~G~~GsGKST~~~~La~-lg~~   28 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD-LGVP   28 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT-TTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCc
Confidence            467999999999999999998 7743

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.18  E-value=0.0032  Score=61.12  Aligned_cols=54  Identities=19%  Similarity=0.272  Sum_probs=34.3

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHhC--CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          218 PELKQMILDDLDRFLRRKEFYRRVG--KAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       218 ~~~k~~i~~~l~~~l~~~~~~~~~g--~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.+++.+.+.+...+........+.  ...+.-+.|.||+|+||||+++.||+.+.
T Consensus        70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~  125 (302)
T 3b9q_A           70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK  125 (302)
T ss_dssp             HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3456666666665554321001122  23344588999999999999999999875

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.18  E-value=0.0024  Score=60.28  Aligned_cols=23  Identities=35%  Similarity=0.507  Sum_probs=21.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .-++|.|+||+||||+++.++..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHH
Confidence            45889999999999999999998

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.15  E-value=0.0026  Score=56.96  Aligned_cols=29  Identities=14%  Similarity=0.193  Sum_probs=24.4

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHh-cchhh
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYL-SVEMK  275 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l-~~~~~  275 (436)
                      .-+.|.||||+||||+++.+|..+ |....
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~   34 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMESIPANTIK   34 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTSCGGGEE
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHCCCceE
Confidence            457899999999999999999998 45443

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.14  E-value=0.0027  Score=57.39  Aligned_cols=26  Identities=38%  Similarity=0.583  Sum_probs=22.5

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++-+.|.||+|+|||||++.|++.+.
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            45688999999999999999998763

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.13  E-value=0.002  Score=61.29  Aligned_cols=29  Identities=28%  Similarity=0.239  Sum_probs=24.1

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++...-++|+||||+|||+|+..+|..+
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34455668999999999999999999854

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.08  E-value=0.0035  Score=60.95  Aligned_cols=30  Identities=37%  Similarity=0.607  Sum_probs=25.8

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .++.+.-+.|.||+|+|||||+++|++.+.
T Consensus       122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~  151 (305)
T 2v9p_A          122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLG  151 (305)
T ss_dssp             TCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred             EecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence            456666799999999999999999999863

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.07  E-value=0.0042  Score=54.37  Aligned_cols=27  Identities=26%  Similarity=0.263  Sum_probs=23.4

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      +...-+.|.||.|+|||||+++|++.+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            444458899999999999999999987

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.02  E-value=0.0047  Score=59.56  Aligned_cols=26  Identities=31%  Similarity=0.323  Sum_probs=22.7

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.-+.+.||+|+||||+++.|+..++
T Consensus        31 ~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           31 PLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            34577999999999999999998876

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.01  E-value=0.0037  Score=56.71  Aligned_cols=27  Identities=26%  Similarity=0.475  Sum_probs=23.2

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+.-+.|.||+|+|||||+++|++.+.
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            334578999999999999999999874

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.00  E-value=0.0025  Score=63.19  Aligned_cols=29  Identities=24%  Similarity=0.398  Sum_probs=24.6

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++..+-++|+||||+|||+|+..+|...
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~   85 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANA   85 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45666679999999999999999998755

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.99  E-value=0.0031  Score=60.46  Aligned_cols=31  Identities=19%  Similarity=0.225  Sum_probs=26.0

Q ss_pred             hCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          241 VGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       241 ~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .|++...-++|.||||+|||+|++.||..+.
T Consensus        30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~   60 (296)
T 1cr0_A           30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWG   60 (296)
T ss_dssp             CSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3556666789999999999999999998764

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=95.97  E-value=0.0042  Score=58.38  Aligned_cols=26  Identities=35%  Similarity=0.484  Sum_probs=23.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      .-+.|.||+||||||+++.||..+|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La~~Lg~   53 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALAESLNW   53 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            35789999999999999999988883

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.97  E-value=0.0034  Score=57.26  Aligned_cols=26  Identities=27%  Similarity=0.336  Sum_probs=23.7

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .++++|.||+|+|||+||..++...+
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g~   59 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRGH   59 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence            47899999999999999999998876

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=95.96  E-value=0.0035  Score=58.76  Aligned_cols=28  Identities=25%  Similarity=0.212  Sum_probs=24.6

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      +.-+.|.|||||||||+++.|+..++..
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~   49 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQLLGQN   49 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence            3458899999999999999999998854

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.96  E-value=0.0034  Score=57.89  Aligned_cols=28  Identities=32%  Similarity=0.354  Sum_probs=23.1

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      |++...-++++|+||+|||++|..+|..
T Consensus        26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~   53 (251)
T 2zts_A           26 GFPEGTTVLLTGGTGTGKTTFAAQFIYK   53 (251)
T ss_dssp             SEETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            4566667999999999999999887653

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.95  E-value=0.0039  Score=57.27  Aligned_cols=26  Identities=31%  Similarity=0.511  Sum_probs=22.7

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      .+.-+.|.||+|+|||||++.|++.+
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34458899999999999999999977

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.94  E-value=0.0029  Score=75.10  Aligned_cols=30  Identities=27%  Similarity=0.416  Sum_probs=26.3

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |++.+++++||||||||||+||.++|.+..
T Consensus      1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~ 1452 (2050)
T 3cmu_A         1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 1452 (2050)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            377788999999999999999999987653

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.94  E-value=0.0037  Score=59.83  Aligned_cols=25  Identities=28%  Similarity=0.347  Sum_probs=22.3

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHh-c
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYL-S  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l-~  271 (436)
                      .-++|.||||+||||+++.++..+ +
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~~~   28 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKNPG   28 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhCCC
Confidence            458899999999999999999864 6

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=95.93  E-value=0.0034  Score=56.74  Aligned_cols=25  Identities=28%  Similarity=0.299  Sum_probs=22.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||+|+||||+++.|++.++
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4477999999999999999999877

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=95.92  E-value=0.0033  Score=62.43  Aligned_cols=29  Identities=28%  Similarity=0.428  Sum_probs=25.1

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++..+-++|+||||+|||+||..+|..+
T Consensus        59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~   87 (356)
T 1u94_A           59 GLPMGRIVEIYGPESSGKTTLTLQVIAAA   87 (356)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46666779999999999999999998765

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.91  E-value=0.0044  Score=61.61  Aligned_cols=53  Identities=19%  Similarity=0.275  Sum_probs=33.6

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHhC--CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          219 ELKQMILDDLDRFLRRKEFYRRVG--KAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       219 ~~k~~i~~~l~~~l~~~~~~~~~g--~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+++.+.+.+...+........+.  ...+.-++|.||+|+||||+++.||+.+.
T Consensus       128 ~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~  182 (359)
T 2og2_A          128 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK  182 (359)
T ss_dssp             HHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence            445556666655554321001122  23344588999999999999999999875

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.90  E-value=0.0036  Score=56.59  Aligned_cols=26  Identities=27%  Similarity=0.289  Sum_probs=23.0

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      -+.|.|++||||||+++.++..+|+.
T Consensus        14 iIgltG~~GSGKSTva~~L~~~lg~~   39 (192)
T 2grj_A           14 VIGVTGKIGTGKSTVCEILKNKYGAH   39 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCE
Confidence            47799999999999999999998843

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.89  E-value=0.0042  Score=55.99  Aligned_cols=25  Identities=36%  Similarity=0.616  Sum_probs=22.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |-++|.||+|+|||||++.+.....
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~~   26 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCC
Confidence            5689999999999999999987753

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.87  E-value=0.0046  Score=63.96  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=22.6

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.-++|.||+|+||||+++.||+.+.
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAgll~  318 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLARQFE  318 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHHHhh
Confidence            33478999999999999999999875

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=95.85  E-value=0.0085  Score=54.05  Aligned_cols=25  Identities=20%  Similarity=0.271  Sum_probs=21.9

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHh
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      +.-+.|.||+|+||||+++.++..+
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~~~   46 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQTL   46 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3447799999999999999999876

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=95.83  E-value=0.0088  Score=59.56  Aligned_cols=48  Identities=19%  Similarity=0.184  Sum_probs=34.1

Q ss_pred             ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .++|.......+.+.+....           +....+|++|++||||+.+|+++....+
T Consensus       130 ~~ig~s~~~~~~~~~~~~~a-----------~~~~~vli~GesGtGKe~lAr~ih~~s~  177 (368)
T 3dzd_A          130 EFVGEHPKILEIKRLIPKIA-----------KSKAPVLITGESGTGKEIVARLIHRYSG  177 (368)
T ss_dssp             CCCCCSHHHHHHHHHHHHHH-----------TSCSCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             cccccchHHHHHHhhhhhhh-----------ccchhheEEeCCCchHHHHHHHHHHhcc
Confidence            45666666666655444221           1235699999999999999999998765

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=95.82  E-value=0.0038  Score=55.78  Aligned_cols=25  Identities=24%  Similarity=0.299  Sum_probs=22.4

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      .-+.|.|++||||||+++.+|.. |.
T Consensus         9 ~~I~i~G~~GsGKST~~~~La~~-g~   33 (203)
T 1uf9_A            9 IIIGITGNIGSGKSTVAALLRSW-GY   33 (203)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT-TC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHC-CC
Confidence            45889999999999999999998 73

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=95.81  E-value=0.0058  Score=55.54  Aligned_cols=26  Identities=23%  Similarity=0.457  Sum_probs=22.6

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++-+.|.||+|+|||||+++|++...
T Consensus        19 g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            34578999999999999999998765

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=95.81  E-value=0.0036  Score=56.56  Aligned_cols=25  Identities=20%  Similarity=0.219  Sum_probs=22.3

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHh-c
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYL-S  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l-~  271 (436)
                      .-+.|.||||+||||+++.+++.+ +
T Consensus        22 ~~i~i~G~~GsGKSTl~~~L~~~~~~   47 (207)
T 2qt1_A           22 FIIGISGVTNSGKTTLAKNLQKHLPN   47 (207)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTTSTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            347799999999999999999987 5

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.79  E-value=0.0074  Score=59.95  Aligned_cols=24  Identities=50%  Similarity=0.814  Sum_probs=22.0

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -+++.||+|+||||+.+++++.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhccc
Confidence            488999999999999999999875

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.78  E-value=0.0035  Score=62.09  Aligned_cols=29  Identities=24%  Similarity=0.336  Sum_probs=24.9

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++...-+.|+||||+|||+|++.+|...
T Consensus       127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          127 GIETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45556668999999999999999999875

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.77  E-value=0.01  Score=60.21  Aligned_cols=49  Identities=24%  Similarity=0.325  Sum_probs=34.4

Q ss_pred             CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcce-eeEeCCCCCChhHHHHHHHHHhc
Q 013823          208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg-~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.+++++....+.+..+...    +           ..+.+ +++.||+|+||||+.+++++.+.
T Consensus       143 ~~~l~~Lg~~~~~~~~L~~l----~-----------~~~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          143 RLDLHSLGMTAHNHDNFRRL----I-----------KRPHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             CCCGGGSCCCHHHHHHHHHH----H-----------TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             CCCHHHcCCCHHHHHHHHHH----H-----------HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            34677777766554433321    1           12344 78999999999999999999886

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.76  E-value=0.0051  Score=59.80  Aligned_cols=51  Identities=16%  Similarity=0.111  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          220 LKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       220 ~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +++.+.+.+...+.....+ .+....++-+++.||+|+||||++..+|..+.
T Consensus        79 ~~~~~~~~l~~~l~~~~~~-~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~  129 (306)
T 1vma_A           79 ALESLKEIILEILNFDTKL-NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV  129 (306)
T ss_dssp             HHHHHHHHHHHHTCSCCCC-CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCC-cccCCCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence            4555555555555322100 01122345688999999999999999998874

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.76  E-value=0.0037  Score=61.03  Aligned_cols=29  Identities=21%  Similarity=0.327  Sum_probs=24.8

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++...-++|+||||+|||+++..+|...
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            56666679999999999999999998754

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.75  E-value=0.0053  Score=60.55  Aligned_cols=29  Identities=21%  Similarity=0.108  Sum_probs=24.4

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++...-++|+||||+|||+|+..+|...
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~  146 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVTA  146 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45655668999999999999999998753

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=95.74  E-value=0.048  Score=61.79  Aligned_cols=53  Identities=23%  Similarity=0.210  Sum_probs=39.7

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      ..|.....++|-++..++|.+.+...           -...+-+.|+|++|.|||+||+.+++.
T Consensus       118 ~~p~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~  170 (1249)
T 3sfz_A          118 GVPQRPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRD  170 (1249)
T ss_dssp             TCCCCCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred             CCCCCCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence            34556677899999888887765310           122456889999999999999998875

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.72  E-value=0.0051  Score=55.90  Aligned_cols=27  Identities=33%  Similarity=0.429  Sum_probs=23.9

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      .-+.|.||||||||++++.+|..+|..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~g~~   30 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASELSMI   30 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCc
Confidence            358899999999999999999999833

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.70  E-value=0.0049  Score=54.24  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=18.3

Q ss_pred             cceeeEeCCCCCChhHHHHHHH
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMA  267 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA  267 (436)
                      +.-+.|.||+|+|||||++++.
T Consensus         9 gei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHS
T ss_pred             CEEEEEECCCCCCHHHHHHHHc
Confidence            3448899999999999999643

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=95.69  E-value=0.0062  Score=56.21  Aligned_cols=29  Identities=38%  Similarity=0.489  Sum_probs=23.6

Q ss_pred             CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          243 KAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       243 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+.+.-+.|.||+|+|||||+++|++.+.
T Consensus        13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            34455688999999999999999999875

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.68  E-value=0.0049  Score=62.46  Aligned_cols=31  Identities=23%  Similarity=0.223  Sum_probs=26.1

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcchhhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMKD  276 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~  276 (436)
                      +.-++|.||||+||||+++.++..++....+
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~  288 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN  288 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence            4558899999999999999999998865544

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=95.68  E-value=0.006  Score=56.84  Aligned_cols=25  Identities=20%  Similarity=0.227  Sum_probs=22.4

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      -+-|.||+|+||||+++.|++.+|.
T Consensus        27 iigI~G~~GsGKSTl~k~L~~~lG~   51 (245)
T 2jeo_A           27 LIGVSGGTASGKSTVCEKIMELLGQ   51 (245)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhch
Confidence            3678999999999999999998874

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.67  E-value=0.0067  Score=56.24  Aligned_cols=25  Identities=28%  Similarity=0.446  Sum_probs=22.4

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||||+||||+++.+++.++
T Consensus        27 ~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           27 AFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            3477899999999999999999986

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.67  E-value=0.0065  Score=56.21  Aligned_cols=26  Identities=23%  Similarity=0.383  Sum_probs=23.3

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      .-+.|.||||||||++++.+|..+|+
T Consensus        17 ~~i~i~G~~gsGKst~~~~l~~~lg~   42 (236)
T 1q3t_A           17 IQIAIDGPASSGKSTVAKIIAKDFGF   42 (236)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            34789999999999999999999883

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.66  E-value=0.007  Score=57.39  Aligned_cols=28  Identities=39%  Similarity=0.615  Sum_probs=23.6

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ....-++|.||+|+||||+++++++.+.
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~   50 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYIN   50 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence            3344588999999999999999999775

>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}

Probab=95.61  E-value=0.0076  Score=46.01  Aligned_cols=46  Identities=7%  Similarity=-0.200  Sum_probs=34.6

Q ss_pred             CCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          339 SYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       339 ~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      |+|+.++|..||+.++....  .....++..|+..+ +||+|||...|.
T Consensus         1 plPd~~~R~~Il~~~l~~~~--~~~~~dl~~la~~t~G~SGADi~~l~~   47 (78)
T 3kw6_A            1 PPPNEEARLDILKIHSRKMN--LTRGINLRKIAELMPGASGAEVKGVCT   47 (78)
T ss_dssp             CCCCHHHHHHHHHHHHTTSE--ECTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHhcCCC--CCCccCHHHHHHHcCCCCHHHHHHHHH
Confidence            78999999999999997653  11223456666655 599999998875

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=95.59  E-value=0.0062  Score=54.90  Aligned_cols=24  Identities=42%  Similarity=0.749  Sum_probs=21.7

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -+.|.||+|+||||+++.||+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhcc
Confidence            377999999999999999999873

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.59  E-value=0.0061  Score=55.45  Aligned_cols=26  Identities=35%  Similarity=0.452  Sum_probs=22.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      .-+.|.|++|+||||+++.++. +|..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~-lg~~   30 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD-LGIN   30 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH-TTCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-cCCE
Confidence            4578999999999999999998 7744

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=95.56  E-value=0.0022  Score=58.00  Aligned_cols=23  Identities=22%  Similarity=0.453  Sum_probs=21.5

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.|.||||+||||+++.|+..++
T Consensus         3 I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            3 IAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999999886

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=95.55  E-value=0.0092  Score=63.04  Aligned_cols=25  Identities=44%  Similarity=0.582  Sum_probs=22.0

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +-+++.||||||||+++.+++..+.
T Consensus       205 ~~~~I~G~pGTGKTt~i~~l~~~l~  229 (574)
T 3e1s_A          205 RLVVLTGGPGTGKSTTTKAVADLAE  229 (574)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            5688999999999999999988654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=95.54  E-value=0.014  Score=57.31  Aligned_cols=27  Identities=33%  Similarity=0.476  Sum_probs=23.5

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+.-+.|.||+|+||||+++.||+.+.
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~  154 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLK  154 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            345588999999999999999999775

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.53  E-value=0.0059  Score=60.13  Aligned_cols=30  Identities=33%  Similarity=0.502  Sum_probs=25.8

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcchhhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVEMKD  276 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~  276 (436)
                      +-++|.||+|+|||+|+..||..++.++.+
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs   70 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHFPLEVIN   70 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTSCEEEEE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHCCCcEEc
Confidence            458899999999999999999999955443

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.47  E-value=0.0051  Score=59.82  Aligned_cols=29  Identities=21%  Similarity=0.217  Sum_probs=24.3

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++...-++|+||||+|||+++..+|...
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~  122 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCVNL  122 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45656668999999999999999998753

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=95.47  E-value=0.0054  Score=61.16  Aligned_cols=29  Identities=31%  Similarity=0.436  Sum_probs=24.6

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++..+-++|+||||+|||+||..+|...
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~~~   98 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVAQA   98 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence            45666779999999999999999988764

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=95.45  E-value=0.0073  Score=61.51  Aligned_cols=26  Identities=23%  Similarity=0.376  Sum_probs=23.0

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++-+++.||||+||||++..+|..+.
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~  122 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYK  122 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45688999999999999999998775

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.39  E-value=0.01  Score=59.26  Aligned_cols=28  Identities=39%  Similarity=0.615  Sum_probs=24.0

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..+.-+++.||+|+||||++++|++.+.
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            4445588999999999999999999775

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.38  E-value=0.0089  Score=58.15  Aligned_cols=30  Identities=30%  Similarity=0.607  Sum_probs=25.8

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      .++-+++.||+|+|||+|+..+|..++.++
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~~~i   38 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILPVEL   38 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEEE
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCCCcE
Confidence            345688999999999999999999998544

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=95.33  E-value=0.0049  Score=56.77  Aligned_cols=26  Identities=19%  Similarity=0.301  Sum_probs=15.6

Q ss_pred             cceeeEeCCCCCChhHHHHHHH-HHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMA-NYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA-~~l~  271 (436)
                      +.-+.|.||+|+||||+++.|+ +.+.
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~   53 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQKN   53 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC----
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            3447899999999999999999 8763

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=95.30  E-value=0.014  Score=62.24  Aligned_cols=24  Identities=42%  Similarity=0.584  Sum_probs=19.8

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHh
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      ...++.||||||||+++..++..+
T Consensus       196 ~~~li~GppGTGKT~~~~~~i~~l  219 (624)
T 2gk6_A          196 PLSLIQGPPGTGKTVTSATIVYHL  219 (624)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHHH
Confidence            357899999999999888777654

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=95.29  E-value=0.0075  Score=58.89  Aligned_cols=28  Identities=25%  Similarity=0.206  Sum_probs=21.9

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++.. -++++||||+|||+|+..++...
T Consensus        25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~   52 (333)
T 3io5_A           25 GMQSG-LLILAGPSKSFKSNFGLTMVSSY   52 (333)
T ss_dssp             CBCSE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             CCcCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence            35554 47899999999999988776654

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.23  E-value=0.011  Score=57.59  Aligned_cols=29  Identities=21%  Similarity=0.305  Sum_probs=25.0

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |+++..-++|.|+||+|||+++..+|...
T Consensus        64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           64 GYKRRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             SBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56666679999999999999999998754

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.21  E-value=0.012  Score=52.33  Aligned_cols=27  Identities=22%  Similarity=0.212  Sum_probs=23.0

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ...-+.+.||+|+||||+++.++..+.
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            345688999999999999999998754

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=95.16  E-value=0.022  Score=55.65  Aligned_cols=24  Identities=25%  Similarity=0.209  Sum_probs=21.6

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -+.|.||+||||||++++|+..++
T Consensus        94 iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            467899999999999999999875

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=95.16  E-value=0.0084  Score=54.44  Aligned_cols=30  Identities=10%  Similarity=0.056  Sum_probs=26.3

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcchhhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVEMKD  276 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~  276 (436)
                      .-+.|.||+|||||++++.+|..+|.++.+
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D   36 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS   36 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence            357899999999999999999999966654

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.15  E-value=0.007  Score=61.06  Aligned_cols=28  Identities=32%  Similarity=0.238  Sum_probs=22.7

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      |++...-++|+||||||||+|+..+|-.
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~  201 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVT  201 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence            4555566899999999999999977643

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=95.14  E-value=0.01  Score=57.94  Aligned_cols=27  Identities=41%  Similarity=0.628  Sum_probs=23.5

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .++-+++.||+|+||||++..+|..+.
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~  130 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYYA  130 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            345688999999999999999998875

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.12  E-value=0.01  Score=58.45  Aligned_cols=28  Identities=25%  Similarity=0.392  Sum_probs=24.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      .-+++.||+|+|||+++..||..++..+
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~i   35 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEI   35 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEE
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCce
Confidence            4688999999999999999999998443

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=95.10  E-value=0.012  Score=57.02  Aligned_cols=26  Identities=35%  Similarity=0.558  Sum_probs=22.9

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.-+.|.||+|+||||+++.||..+.
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagll~  127 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRYYQ  127 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            44588999999999999999999875

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=95.10  E-value=0.012  Score=57.23  Aligned_cols=25  Identities=20%  Similarity=0.146  Sum_probs=21.9

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||+|+|||||++.|++.+.
T Consensus        91 ~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           91 FIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCchHHHHHHHHHhhcc
Confidence            3477899999999999999999764

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.08  E-value=0.01  Score=60.50  Aligned_cols=52  Identities=23%  Similarity=0.450  Sum_probs=33.1

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          219 ELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       219 ~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+++.|.+.+...+......... ...+.-+++.||||+||||++..+|..+.
T Consensus        74 ~v~~~l~~eL~~~L~~~~~~~~~-~~~p~vIlivG~~G~GKTTt~~kLA~~l~  125 (443)
T 3dm5_A           74 HIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQ  125 (443)
T ss_dssp             HHHHHHHHHHHHHTTSSCCCCCC-CSSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCccccccc-CCCCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence            34555666665555431100000 12356689999999999999999998775

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.02  E-value=0.011  Score=52.08  Aligned_cols=24  Identities=29%  Similarity=0.311  Sum_probs=21.7

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -.+|+||.|+|||++++||+..++
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            457999999999999999998876

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.01  E-value=0.01  Score=52.89  Aligned_cols=24  Identities=38%  Similarity=0.502  Sum_probs=21.8

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHH
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .+|+||.||+|+|||++|.++...
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            479999999999999999998874

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=94.98  E-value=0.024  Score=49.82  Aligned_cols=26  Identities=23%  Similarity=0.544  Sum_probs=21.9

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      ...-+++.|++|+|||+|+.++++..
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34469999999999999999998743

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=94.95  E-value=0.011  Score=56.37  Aligned_cols=26  Identities=31%  Similarity=0.287  Sum_probs=22.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      .-+.|.|+|||||||+++.++ .+|..
T Consensus        76 ~iI~I~G~~GSGKSTva~~La-~lg~~  101 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLK-NLGAY  101 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH-HHTCE
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCCc
Confidence            348899999999999999999 57743

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=94.94  E-value=0.024  Score=59.49  Aligned_cols=50  Identities=22%  Similarity=0.136  Sum_probs=36.1

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      ..-..++|-++..+.|.+.+..           +....+-++++||+|+|||+||..+++.
T Consensus       121 ~~~~~~vGR~~~l~~L~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~  170 (591)
T 1z6t_A          121 QRPVVFVTRKKLVNAIQQKLSK-----------LKGEPGWVTIHGMAGCGKSVLAAEAVRD  170 (591)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHTT-----------STTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CCCCeecccHHHHHHHHHHHhc-----------ccCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence            3345678888888887665431           0122456899999999999999998753

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=94.92  E-value=0.012  Score=54.78  Aligned_cols=25  Identities=24%  Similarity=0.549  Sum_probs=22.3

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcch
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      +-|.||||+||||+++.||..+++.
T Consensus        11 ~~~~G~pGsGKsT~a~~L~~~~g~~   35 (230)
T 3gmt_A           11 LILLGAPGAGKGTQANFIKEKFGIP   35 (230)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred             eeeECCCCCCHHHHHHHHHHHhCCC
Confidence            5588999999999999999999843

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=94.89  E-value=0.012  Score=53.71  Aligned_cols=23  Identities=35%  Similarity=0.375  Sum_probs=20.9

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .-+.|.||.|+|||||+++|++.
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            44789999999999999999987

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=94.87  E-value=0.014  Score=56.95  Aligned_cols=27  Identities=26%  Similarity=0.367  Sum_probs=23.7

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      +-+++.||+|+|||+|+..+|..++..
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~~~~   30 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRLNGE   30 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTTEE
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhCccc
Confidence            357889999999999999999999843

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=94.85  E-value=0.013  Score=61.13  Aligned_cols=26  Identities=23%  Similarity=0.474  Sum_probs=23.4

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.-++|.|+||+|||++++.+|..++
T Consensus        35 ~~lIvlvGlpGSGKSTia~~La~~L~   60 (520)
T 2axn_A           35 PTVIVMVGLPARGKTYISKKLTRYLN   60 (520)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            34588999999999999999999985

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=94.84  E-value=0.0095  Score=55.48  Aligned_cols=26  Identities=23%  Similarity=0.405  Sum_probs=22.2

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..-+.|.||.|+|||||.++|++.+.
T Consensus        31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           31 GEFVSIMGPSGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            34588999999999999999987654

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=94.83  E-value=0.0096  Score=55.54  Aligned_cols=27  Identities=30%  Similarity=0.311  Sum_probs=22.6

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ...-+.|.||.|+|||||+++|++.+.
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAEMD   56 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            344588999999999999999988653

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=94.77  E-value=0.023  Score=62.28  Aligned_cols=24  Identities=42%  Similarity=0.584  Sum_probs=19.7

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHh
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      .-+++.||||||||+++..++..+
T Consensus       372 ~~~lI~GppGTGKT~ti~~~i~~l  395 (800)
T 2wjy_A          372 PLSLIQGPPGTGKTVTSATIVYHL  395 (800)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHH
Confidence            357899999999999888777654

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=94.75  E-value=0.017  Score=59.12  Aligned_cols=30  Identities=17%  Similarity=0.284  Sum_probs=25.1

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |++.+.-++|.||||+|||+|+..+|..+.
T Consensus       199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~  228 (454)
T 2r6a_A          199 GFQRSDLIIVAARPSVGKTAFALNIAQNVA  228 (454)
T ss_dssp             SBCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            556666689999999999999999997653

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=94.73  E-value=0.012  Score=55.02  Aligned_cols=25  Identities=32%  Similarity=0.582  Sum_probs=22.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||.|+|||||.++|++.+.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCC
Confidence            5577999999999999999998764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=94.67  E-value=0.0087  Score=55.31  Aligned_cols=25  Identities=24%  Similarity=0.324  Sum_probs=21.4

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||.|+|||||.++|++.+.
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4478999999999999999987653

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=94.63  E-value=0.012  Score=55.85  Aligned_cols=25  Identities=20%  Similarity=0.345  Sum_probs=21.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||.|+|||||+++|++.+.
T Consensus        33 e~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           33 DVISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4478999999999999999988654

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=94.62  E-value=0.015  Score=52.05  Aligned_cols=24  Identities=17%  Similarity=0.321  Sum_probs=19.3

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHh
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      .-++++||||+|||+++..++..+
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            347899999999999986666544

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=94.61  E-value=0.016  Score=51.58  Aligned_cols=22  Identities=32%  Similarity=0.563  Sum_probs=20.0

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -++|.||+|+|||+|++++++.
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4789999999999999999874

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=94.60  E-value=0.017  Score=55.87  Aligned_cols=25  Identities=24%  Similarity=0.223  Sum_probs=22.0

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||+|+||||+++.|++.++
T Consensus        81 ~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3477899999999999999999765

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=94.52  E-value=0.013  Score=60.98  Aligned_cols=26  Identities=19%  Similarity=0.439  Sum_probs=23.6

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.++++.||+|+||||+++++++.+.
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            45699999999999999999999886

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=94.52  E-value=0.011  Score=56.81  Aligned_cols=24  Identities=17%  Similarity=0.282  Sum_probs=18.9

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -+.|.||+|+||||+++.++..++
T Consensus         7 iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            7 IISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            477999999999999999999876

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=94.50  E-value=0.015  Score=57.61  Aligned_cols=27  Identities=22%  Similarity=0.399  Sum_probs=23.7

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      ..-+.|.||+|+|||||+++|++.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            345889999999999999999998864

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=94.49  E-value=0.013  Score=54.82  Aligned_cols=27  Identities=22%  Similarity=0.429  Sum_probs=22.8

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ...-+.|.||.|+|||||+++|++.+.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            334588999999999999999998764

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=94.49  E-value=0.012  Score=54.58  Aligned_cols=26  Identities=27%  Similarity=0.402  Sum_probs=22.1

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..-+.|.||.|+|||||.++|++.+.
T Consensus        34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           34 GQLLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            34588999999999999999988653

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=94.48  E-value=0.02  Score=58.43  Aligned_cols=29  Identities=14%  Similarity=0.137  Sum_probs=24.8

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++++.-++|.|+||+|||+++..+|...
T Consensus       196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~  224 (444)
T 2q6t_A          196 TLGPGSLNIIAARPAMGKTAFALTIAQNA  224 (444)
T ss_dssp             CCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56666668999999999999999998765

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=94.47  E-value=0.02  Score=48.44  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=19.8

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -+++.|++|+|||+|++++++.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999864

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=94.46  E-value=0.016  Score=51.44  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=20.2

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHh
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      -+.|.||+|+|||||++.+++..
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            37899999999999999998753

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=94.45  E-value=0.012  Score=54.13  Aligned_cols=25  Identities=32%  Similarity=0.638  Sum_probs=21.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||.|+|||||.++|++.+.
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4478999999999999999988653

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=94.45  E-value=0.018  Score=53.37  Aligned_cols=25  Identities=20%  Similarity=0.335  Sum_probs=22.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.+.|++|+||||+++.++..++
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            4478999999999999999999984

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=94.45  E-value=0.012  Score=55.57  Aligned_cols=25  Identities=40%  Similarity=0.747  Sum_probs=21.7

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||.|+|||||.++|++.+.
T Consensus        34 e~~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           34 DVTLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3478999999999999999988664

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=94.44  E-value=0.073  Score=52.44  Aligned_cols=23  Identities=43%  Similarity=0.704  Sum_probs=20.8

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHh
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      -+.|.||||+|||||.+++++.+
T Consensus        76 ~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           76 RVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            47799999999999999999865

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=94.44  E-value=0.018  Score=58.67  Aligned_cols=26  Identities=35%  Similarity=0.585  Sum_probs=23.0

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++.+++.||||+||||++..+|..+.
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35688999999999999999999774

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=94.42  E-value=0.021  Score=50.49  Aligned_cols=25  Identities=16%  Similarity=0.222  Sum_probs=22.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.+.|++|+|||+++..++..+.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhH
Confidence            4578999999999999999998874

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=94.42  E-value=0.014  Score=55.41  Aligned_cols=26  Identities=23%  Similarity=0.461  Sum_probs=22.0

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..-+.|.||.|+|||||+++|++.+.
T Consensus        50 Gei~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           50 GEVVVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence            34478999999999999999988653

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=94.40  E-value=0.02  Score=55.27  Aligned_cols=26  Identities=27%  Similarity=0.517  Sum_probs=22.8

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++-++|.||+|+||||++..+|..+.
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45688999999999999999998764

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=94.40  E-value=0.014  Score=55.61  Aligned_cols=27  Identities=33%  Similarity=0.455  Sum_probs=22.8

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ...-+.|.||.|+|||||+++|++.+.
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            334588999999999999999998764

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=94.39  E-value=0.014  Score=55.21  Aligned_cols=27  Identities=22%  Similarity=0.364  Sum_probs=22.6

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      +.+.-+.|.||.|+|||||+++|++.+
T Consensus        44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           44 PSGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            334458899999999999999998865

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=94.38  E-value=0.017  Score=55.03  Aligned_cols=24  Identities=25%  Similarity=0.459  Sum_probs=21.7

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+.|.||+|+|||||+++|++...
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~   27 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQV   27 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            477999999999999999999775

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=94.36  E-value=0.019  Score=54.55  Aligned_cols=25  Identities=36%  Similarity=0.485  Sum_probs=21.6

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHh
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      ..-+.|.||.|+|||||+++|++.+
T Consensus        46 Ge~~~l~G~NGsGKSTLlk~l~Gl~   70 (267)
T 2zu0_C           46 GEVHAIMGPNGSGKSTLSATLAGRE   70 (267)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3448899999999999999999863

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=94.34  E-value=0.02  Score=52.53  Aligned_cols=24  Identities=38%  Similarity=0.394  Sum_probs=21.7

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -+.|.||+|+||||+++.++..+.
T Consensus         8 ~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            8 FVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            467889999999999999999886

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.34  E-value=0.02  Score=51.49  Aligned_cols=24  Identities=25%  Similarity=0.512  Sum_probs=21.3

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHh
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      ..++|.|+||+|||+|+.++++..
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            458999999999999999998754

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=94.30  E-value=0.013  Score=54.92  Aligned_cols=26  Identities=23%  Similarity=0.360  Sum_probs=22.2

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..-+.|.||.|+|||||+++|++.+.
T Consensus        35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           35 GEVIGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34478999999999999999988654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=94.28  E-value=0.014  Score=55.83  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=21.8

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||.|+|||||+++|++.+.
T Consensus        35 e~~~iiGpnGsGKSTLl~~l~Gl~~   59 (275)
T 3gfo_A           35 EVTAILGGNGVGKSTLFQNFNGILK   59 (275)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCC
Confidence            3478999999999999999998664

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=94.27  E-value=0.023  Score=48.08  Aligned_cols=21  Identities=29%  Similarity=0.509  Sum_probs=19.2

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      -+++.|+||+|||+|+.++.+
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999999876

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=94.26  E-value=0.014  Score=54.89  Aligned_cols=25  Identities=48%  Similarity=0.631  Sum_probs=21.8

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||.|+|||||.++|++.+.
T Consensus        27 e~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3478999999999999999998764

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=94.26  E-value=0.042  Score=53.91  Aligned_cols=24  Identities=38%  Similarity=0.522  Sum_probs=21.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHh
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      .-+.|.||||+|||||++++++.+
T Consensus        56 ~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           56 IRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhh
Confidence            347799999999999999999876

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.25  E-value=0.014  Score=54.48  Aligned_cols=25  Identities=28%  Similarity=0.478  Sum_probs=21.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||.|+|||||.++|++.+.
T Consensus        33 e~~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           33 QIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3478999999999999999988654

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=94.24  E-value=0.019  Score=53.26  Aligned_cols=25  Identities=20%  Similarity=0.232  Sum_probs=19.0

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      -+.|.||+|+||||+++.++..+..
T Consensus        27 ~I~~eG~~GsGKsT~~~~l~~~l~~   51 (227)
T 3v9p_A           27 FITFEGIDGAGKTTHLQWFCDRLQE   51 (227)
T ss_dssp             EEEEECCC---CHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3678899999999999999998853

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=94.24  E-value=0.019  Score=53.14  Aligned_cols=30  Identities=17%  Similarity=0.118  Sum_probs=25.8

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcchhhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVEMKD  276 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~  276 (436)
                      .-+.+.|++|||||++++.+|..+|..+.+
T Consensus        15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d   44 (223)
T 3hdt_A           15 LIITIEREYGSGGRIVGKKLAEELGIHFYD   44 (223)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence            357899999999999999999999965544

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=94.23  E-value=0.016  Score=57.63  Aligned_cols=25  Identities=24%  Similarity=0.547  Sum_probs=21.9

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||+|||||||.++||+...
T Consensus        31 e~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCchHHHHHHHHhcCCC
Confidence            3477999999999999999998764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=94.23  E-value=0.018  Score=54.03  Aligned_cols=23  Identities=39%  Similarity=0.473  Sum_probs=20.7

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .-+.|.||.|+|||||+++|++.
T Consensus        30 e~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           30 EVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            44789999999999999999986

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=94.21  E-value=0.024  Score=48.20  Aligned_cols=23  Identities=26%  Similarity=0.301  Sum_probs=20.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      --+++.|++|+|||+|++++.+.
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            35899999999999999999863

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=94.21  E-value=0.02  Score=49.38  Aligned_cols=22  Identities=32%  Similarity=0.528  Sum_probs=19.6

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -+.|.|+||+|||+|++++++.
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999763

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.20  E-value=0.017  Score=54.64  Aligned_cols=26  Identities=23%  Similarity=0.503  Sum_probs=22.0

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.-+.|.||.|+|||||.++|++.+.
T Consensus        41 Gei~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           41 GEIFGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34478999999999999999988653

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.19  E-value=0.021  Score=57.47  Aligned_cols=28  Identities=29%  Similarity=0.436  Sum_probs=24.3

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      .-+++.||+|+|||+|+..+|..++..+
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~~i   30 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNGEV   30 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTEEE
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCCeE
Confidence            4578999999999999999999998543

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=94.17  E-value=0.012  Score=55.42  Aligned_cols=25  Identities=16%  Similarity=0.300  Sum_probs=22.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-|.|.|++|+||||+++.|+..+.
T Consensus        25 ~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           25 KKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3477899999999999999999983

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=94.17  E-value=0.02  Score=57.00  Aligned_cols=25  Identities=36%  Similarity=0.586  Sum_probs=21.8

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||+|||||||.++||+.+.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A           30 EFMALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCchHHHHHHHHhcCCC
Confidence            3477999999999999999998764

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=94.14  E-value=0.02  Score=57.31  Aligned_cols=25  Identities=32%  Similarity=0.541  Sum_probs=21.9

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||+|||||||.++||+...
T Consensus        30 e~~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEEcCCCchHHHHHHHHHcCCC
Confidence            3477999999999999999998764

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=94.13  E-value=0.023  Score=58.29  Aligned_cols=26  Identities=23%  Similarity=0.460  Sum_probs=23.4

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.-++|.|+||+|||++++.+|..++
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~l~   64 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRYLN   64 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            34689999999999999999999876

>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=94.13  E-value=0.033  Score=61.10  Aligned_cols=23  Identities=43%  Similarity=0.622  Sum_probs=18.6

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHh
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      -+|+.||||||||+++..++..+
T Consensus       377 ~~lI~GppGTGKT~~i~~~i~~l  399 (802)
T 2xzl_A          377 LSLIQGPPGTGKTVTSATIVYHL  399 (802)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999877766543

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=94.11  E-value=0.015  Score=55.20  Aligned_cols=26  Identities=38%  Similarity=0.672  Sum_probs=22.2

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..-+.|.||.|+|||||+++|++.+.
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            34478999999999999999998664

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=94.11  E-value=0.025  Score=52.43  Aligned_cols=24  Identities=25%  Similarity=0.295  Sum_probs=21.4

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+++.|+||+|||+++-.+|..+.
T Consensus         8 ~I~~~~kgGvGKTt~a~~la~~l~   31 (228)
T 2r8r_A            8 KVFLGAAPGVGKTYAMLQAAHAQL   31 (228)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHH
Confidence            488999999999999999998764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=94.10  E-value=0.018  Score=54.70  Aligned_cols=26  Identities=31%  Similarity=0.533  Sum_probs=22.0

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.-+.|.||.|+|||||.++|++.+.
T Consensus        33 Ge~~~liG~nGsGKSTLl~~i~Gl~~   58 (266)
T 2yz2_A           33 GECLLVAGNTGSGKSTLLQIVAGLIE   58 (266)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            34478999999999999999988653

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.09  E-value=0.026  Score=48.01  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=19.6

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .+++.|++|+|||+|++++.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999998753

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=94.09  E-value=0.016  Score=55.50  Aligned_cols=25  Identities=32%  Similarity=0.720  Sum_probs=21.8

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||.|+|||||.++|++.+.
T Consensus        48 e~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           48 DKWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3478999999999999999998764

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=94.09  E-value=0.026  Score=60.03  Aligned_cols=24  Identities=38%  Similarity=0.589  Sum_probs=20.5

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHh
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      +-+++.||||||||+++.++...+
T Consensus       165 ~~~vi~G~pGTGKTt~l~~ll~~l  188 (608)
T 1w36_D          165 RISVISGGPGTGKTTTVAKLLAAL  188 (608)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHHHH
Confidence            568999999999999988877654

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=94.08  E-value=0.021  Score=57.02  Aligned_cols=25  Identities=28%  Similarity=0.499  Sum_probs=21.9

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||+|||||||.++||+.+.
T Consensus        38 e~~~llGpnGsGKSTLLr~iaGl~~   62 (372)
T 1v43_A           38 EFLVLLGPSGCGKTTTLRMIAGLEE   62 (372)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCC
Confidence            3477999999999999999998764

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=94.06  E-value=0.022  Score=56.50  Aligned_cols=25  Identities=28%  Similarity=0.468  Sum_probs=21.8

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||+|||||||.++||+...
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~   54 (359)
T 2yyz_A           30 EFVALLGPSGCGKTTTLLMLAGIYK   54 (359)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEEcCCCchHHHHHHHHHCCCC
Confidence            3477999999999999999998764

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=94.05  E-value=0.016  Score=54.58  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=21.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||.|+|||||.++|++.+.
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4478999999999999999988653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=94.05  E-value=0.022  Score=48.84  Aligned_cols=21  Identities=43%  Similarity=0.711  Sum_probs=19.2

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      -+++.|+||+|||+|++++.+
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCccHHHHHHHHhc
Confidence            589999999999999999875

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=94.05  E-value=0.027  Score=47.95  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=19.7

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -+++.|++|+|||+|++++.+.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999998764

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=94.05  E-value=0.019  Score=56.99  Aligned_cols=25  Identities=28%  Similarity=0.494  Sum_probs=21.7

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||+|||||||.++||+.+.
T Consensus        42 e~~~llGpnGsGKSTLLr~iaGl~~   66 (355)
T 1z47_A           42 EMVGLLGPSGSGKTTILRLIAGLER   66 (355)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3477999999999999999998664

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=94.05  E-value=0.027  Score=48.50  Aligned_cols=21  Identities=38%  Similarity=0.567  Sum_probs=19.3

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      .+++.|+||+|||+|++++.+
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~   29 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVT   29 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999999875

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=94.04  E-value=0.027  Score=47.70  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .-+++.|++|+|||+|++++.+.
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            45899999999999999998863

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=94.04  E-value=0.018  Score=50.55  Aligned_cols=22  Identities=23%  Similarity=0.569  Sum_probs=19.6

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -++|.|+||+|||+|++.+++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999999864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.02  E-value=0.021  Score=59.51  Aligned_cols=29  Identities=28%  Similarity=0.305  Sum_probs=24.8

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++...-++|.||||+|||+|++.+|...
T Consensus       277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          277 GFFKDSIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45556668999999999999999999865

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=94.00  E-value=0.029  Score=47.89  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=20.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      --+++.|++|+|||+|++++.+.
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            35899999999999999998864

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=93.96  E-value=0.024  Score=47.85  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=19.7

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -+++.|++|+|||+|++++++.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4889999999999999999864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=93.92  E-value=0.016  Score=57.55  Aligned_cols=27  Identities=26%  Similarity=0.513  Sum_probs=23.5

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+..++|.||+|+|||||+++|++.+.
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            345689999999999999999998765

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=93.92  E-value=0.022  Score=59.37  Aligned_cols=29  Identities=28%  Similarity=0.410  Sum_probs=23.1

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHH--HHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAA--MANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~a--iA~~l  270 (436)
                      +++...-++|.||+|||||||+++  +++..
T Consensus        35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~   65 (525)
T 1tf7_A           35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGII   65 (525)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            345566799999999999999999  45543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=93.92  E-value=0.029  Score=48.32  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.3

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .-+++.|++|+|||+|++++.+.
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            45899999999999999998763

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=93.89  E-value=0.027  Score=58.53  Aligned_cols=26  Identities=12%  Similarity=0.028  Sum_probs=23.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      ..+.|.|++||||||+++++|..|+.
T Consensus       396 ~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          396 FSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             eEEEecccCCCCHHHHHHHHHHHHHH
Confidence            35789999999999999999999985

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=93.88  E-value=0.027  Score=47.96  Aligned_cols=21  Identities=33%  Similarity=0.596  Sum_probs=19.2

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      -+++.|++|+|||+|++++.+
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            488999999999999999875

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=93.88  E-value=0.021  Score=57.00  Aligned_cols=25  Identities=28%  Similarity=0.510  Sum_probs=21.7

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||+|||||||.++||+.+.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           30 EFMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCC
Confidence            3477999999999999999998654

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=93.87  E-value=0.031  Score=51.71  Aligned_cols=24  Identities=21%  Similarity=0.205  Sum_probs=20.1

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -++++||||+|||+++..++..+.
T Consensus        14 i~litG~mGsGKTT~ll~~~~r~~   37 (223)
T 2b8t_A           14 IEFITGPMFAGKTAELIRRLHRLE   37 (223)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHH
Confidence            367889999999999988887663

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=93.83  E-value=0.031  Score=47.49  Aligned_cols=21  Identities=33%  Similarity=0.536  Sum_probs=19.3

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      -+++.|++|+|||+|+.++.+
T Consensus         8 ~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999999876

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=93.79  E-value=0.028  Score=49.09  Aligned_cols=22  Identities=32%  Similarity=0.528  Sum_probs=19.9

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -++|.|++|+|||+|++++++.
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999863

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=93.79  E-value=0.027  Score=48.02  Aligned_cols=21  Identities=38%  Similarity=0.626  Sum_probs=19.3

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      -+++.|+||+|||+|+.++.+
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            589999999999999999875

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=93.78  E-value=0.028  Score=51.72  Aligned_cols=26  Identities=23%  Similarity=0.226  Sum_probs=23.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      .-+.|.||+|+||||+++.++..++.
T Consensus         6 ~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            6 KLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            34778899999999999999999984

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=93.75  E-value=0.033  Score=47.28  Aligned_cols=21  Identities=29%  Similarity=0.529  Sum_probs=19.3

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      -+++.|+||+|||+|++++.+
T Consensus         5 ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            488999999999999999986

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=93.75  E-value=0.032  Score=54.87  Aligned_cols=30  Identities=23%  Similarity=0.185  Sum_probs=25.1

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |+.+..-++|.|+||+|||+|+..+|....
T Consensus        42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a   71 (338)
T 4a1f_A           42 GFNKGSLVIIGARPSMGKTSLMMNMVLSAL   71 (338)
T ss_dssp             SBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            556666699999999999999999987653

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=93.75  E-value=0.031  Score=48.11  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=19.8

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -+++.|+||+|||+|++++.+.
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4899999999999999999864

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=93.74  E-value=0.027  Score=48.06  Aligned_cols=20  Identities=35%  Similarity=0.634  Sum_probs=18.4

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      +++.|+||+|||+|+.++.+
T Consensus         5 i~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            5 VMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999999864

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=93.72  E-value=0.021  Score=55.93  Aligned_cols=26  Identities=19%  Similarity=0.599  Sum_probs=23.0

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +..+++.||+|+|||||+++|++.+.
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            35689999999999999999998765

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=93.71  E-value=0.033  Score=48.52  Aligned_cols=22  Identities=27%  Similarity=0.540  Sum_probs=19.9

Q ss_pred             ceeeEeCCCCCChhHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      --++|.|++|+|||+|++++.+
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4589999999999999999986

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=93.71  E-value=0.034  Score=47.20  Aligned_cols=21  Identities=19%  Similarity=0.333  Sum_probs=19.0

Q ss_pred             eeEeCCCCCChhHHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~  269 (436)
                      +++.|++|+|||+|+.++.+.
T Consensus         3 i~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999999763

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=93.70  E-value=0.05  Score=55.23  Aligned_cols=27  Identities=30%  Similarity=0.463  Sum_probs=23.3

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .++.+++.||+|+||||++..+|..+.
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~  123 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYK  123 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            345688889999999999999998875

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=93.67  E-value=0.031  Score=58.03  Aligned_cols=26  Identities=23%  Similarity=0.470  Sum_probs=22.4

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++.+++.|+||+||||++..+|..+.
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA~~l~  126 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLAYYYQ  126 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45688999999999999999997764

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=93.63  E-value=0.02  Score=56.61  Aligned_cols=25  Identities=24%  Similarity=0.639  Sum_probs=21.8

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||+|||||||.++||+...
T Consensus        27 e~~~llGpnGsGKSTLLr~iaGl~~   51 (348)
T 3d31_A           27 EYFVILGPTGAGKTLFLELIAGFHV   51 (348)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCccHHHHHHHHHcCCC
Confidence            3477999999999999999998664

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=93.60  E-value=0.024  Score=53.70  Aligned_cols=25  Identities=32%  Similarity=0.713  Sum_probs=21.6

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHh
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      ..-+.|.||.|+|||||.++|++.+
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            3447899999999999999998865

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=93.58  E-value=0.033  Score=51.94  Aligned_cols=25  Identities=28%  Similarity=0.412  Sum_probs=22.3

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||+|+||||+++.++..+.
T Consensus        28 ~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           28 KFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             CEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4477899999999999999999886

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=93.57  E-value=0.036  Score=48.50  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=20.5

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      --+++.|++|+|||+|+.++.+.
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999999875

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=93.56  E-value=0.044  Score=55.88  Aligned_cols=24  Identities=38%  Similarity=0.560  Sum_probs=22.1

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -+.|.||+|||||+|++.||+...
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcccC
Confidence            378999999999999999999876

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=93.56  E-value=0.037  Score=48.08  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.7

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -+++.|++|+|||+|+.++.+.
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999753

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=93.55  E-value=0.038  Score=47.52  Aligned_cols=22  Identities=45%  Similarity=0.614  Sum_probs=19.9

Q ss_pred             eeEeCCCCCChhHHHHHHHHHh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      .+++||.|+|||++..||.-.+
T Consensus        26 ~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999998765

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=93.53  E-value=0.035  Score=51.36  Aligned_cols=25  Identities=32%  Similarity=0.389  Sum_probs=22.2

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      -+.|.|++|+||||+++.+++.++.
T Consensus        23 ~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           23 FITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3678899999999999999998765

>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}

Probab=93.50  E-value=0.077  Score=41.32  Aligned_cols=48  Identities=8%  Similarity=-0.175  Sum_probs=34.7

Q ss_pred             EcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          337 NMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       337 ~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      +-.+|+.++|..|++.++.....  ....++..|+..+ +||+|||.++|.
T Consensus         7 ~~~~Pd~~~R~~IL~~~l~~~~l--~~dvdl~~LA~~T~G~SGADL~~l~~   55 (86)
T 2krk_A            7 HHSHPNEEARLDILKIHSRKMNL--TRGINLRKIAELMPGASGAEVKGVCT   55 (86)
T ss_dssp             CCCCCCHHHHHHHHHHHTTTSEE--CTTCCCHHHHHTCSSCCHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHcCCCC--CcccCHHHHHHHcCCCCHHHHHHHHH
Confidence            34789999999999999976521  1122345555554 699999999885

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=93.50  E-value=0.038  Score=47.46  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.4

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .-+++.|++|+|||+|++++.+.
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999999864

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=93.49  E-value=0.044  Score=47.13  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=20.2

Q ss_pred             cceeeEeCCCCCChhHHHHHHHH
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      ..-+++.|++|+|||+|+.++.+
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            34589999999999999999875

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=93.47  E-value=0.032  Score=47.92  Aligned_cols=21  Identities=29%  Similarity=0.477  Sum_probs=19.2

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      -+++.|++|+|||+|+.++.+
T Consensus        16 ~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999999875

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=93.47  E-value=0.036  Score=56.54  Aligned_cols=30  Identities=23%  Similarity=0.319  Sum_probs=24.8

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |+.++.-+++.|+||+|||+++..+|....
T Consensus       193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a  222 (444)
T 3bgw_A          193 GYKRRNFVLIAARPSMGKTAFALKQAKNMS  222 (444)
T ss_dssp             SBCSSCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCChHHHHHHHHHHHH
Confidence            555555699999999999999999987653

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=93.46  E-value=0.032  Score=65.56  Aligned_cols=30  Identities=27%  Similarity=0.416  Sum_probs=25.8

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |++++..++|+||||+|||+|+..+|..+.
T Consensus       728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa  757 (1706)
T 3cmw_A          728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ  757 (1706)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence            466777899999999999999999987654

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=93.46  E-value=0.017  Score=51.18  Aligned_cols=26  Identities=27%  Similarity=0.338  Sum_probs=22.7

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      ..+.|.||+|+|||||++.|+..+..
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~   28 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRE   28 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            35789999999999999999998753

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=93.46  E-value=0.019  Score=60.35  Aligned_cols=25  Identities=36%  Similarity=0.438  Sum_probs=22.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..+.|.||+||||||++++||+.++
T Consensus       370 ~iI~LiG~sGSGKSTLar~La~~L~  394 (552)
T 3cr8_A          370 FTVFFTGLSGAGKSTLARALAARLM  394 (552)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCChHHHHHHHHHHhhc
Confidence            3478999999999999999999985

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=93.45  E-value=0.041  Score=47.53  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=20.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .-+++.|++|+|||+|++++.+.
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            35899999999999999998753

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=93.44  E-value=0.038  Score=48.57  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=20.3

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      --+++.|++|+|||+|++++.+.
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            35899999999999999998863

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=93.44  E-value=0.039  Score=53.24  Aligned_cols=26  Identities=27%  Similarity=0.422  Sum_probs=22.5

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++-+++.||+|+||||++..+|..+.
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~  123 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYK  123 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            44577899999999999999998774

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=93.43  E-value=0.049  Score=46.44  Aligned_cols=22  Identities=23%  Similarity=0.459  Sum_probs=19.8

Q ss_pred             ceeeEeCCCCCChhHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      .-+++.|++|+|||+|+.++.+
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            4589999999999999999965

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=93.42  E-value=0.023  Score=54.69  Aligned_cols=26  Identities=27%  Similarity=0.402  Sum_probs=22.4

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.-+.|.||.|+|||||.++|++.+.
T Consensus        64 Ge~~~i~G~NGsGKSTLlk~l~Gl~~   89 (290)
T 2bbs_A           64 GQLLAVAGSTGAGKTSLLMMIMGELE   89 (290)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            34488999999999999999998764

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=93.41  E-value=0.044  Score=58.31  Aligned_cols=25  Identities=32%  Similarity=0.505  Sum_probs=22.6

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHh
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      +.-++|.|+||+||||++++++..+
T Consensus        52 g~lIvLtGlsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           52 GCTVWLTGLSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3458899999999999999999998

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=93.37  E-value=0.027  Score=56.52  Aligned_cols=27  Identities=33%  Similarity=0.448  Sum_probs=22.6

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ...-+.|.||+|||||||.++||+.+.
T Consensus        46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~   72 (390)
T 3gd7_A           46 PGQRVGLLGRTGSGKSTLLSAFLRLLN   72 (390)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence            334588999999999999999998653

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=93.36  E-value=0.041  Score=48.16  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=19.9

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -+++.|++|+|||+|+.++++.
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4899999999999999999864

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=93.35  E-value=0.041  Score=47.60  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.3

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .-+++.|++|+|||+|++++++.
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            45899999999999999999863

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=93.33  E-value=0.044  Score=54.07  Aligned_cols=24  Identities=29%  Similarity=0.440  Sum_probs=22.2

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -+.|.||+|+|||||++.|++...
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            388999999999999999999876

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=93.32  E-value=0.018  Score=57.14  Aligned_cols=25  Identities=24%  Similarity=0.546  Sum_probs=21.8

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||+|||||||.++||+...
T Consensus        32 e~~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           32 ERFGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3477999999999999999998664

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=93.31  E-value=0.068  Score=51.38  Aligned_cols=26  Identities=31%  Similarity=0.547  Sum_probs=22.5

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++-+.+.||+|+||||++..+|..+.
T Consensus        98 ~~~i~i~g~~G~GKTT~~~~la~~~~  123 (295)
T 1ls1_A           98 RNLWFLVGLQGSGKTTTAAKLALYYK  123 (295)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            44577889999999999999998775

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=93.28  E-value=0.033  Score=47.42  Aligned_cols=21  Identities=43%  Similarity=0.703  Sum_probs=18.5

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      -+++.|+||+|||+|++++.+
T Consensus         4 ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            378999999999999998853

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=93.27  E-value=0.039  Score=49.75  Aligned_cols=25  Identities=24%  Similarity=0.360  Sum_probs=22.3

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+++.|+||+|||||+..++..+.
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            4688999999999999999998864

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=93.27  E-value=0.11  Score=54.28  Aligned_cols=43  Identities=19%  Similarity=0.210  Sum_probs=33.0

Q ss_pred             cChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHH
Q 013823          216 MDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       216 g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      |-++.++.|.+.+..-          +....+.+.++|++|.|||+||+.+++
T Consensus       132 GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          132 IREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             CCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence            8888888887766321          112246688999999999999999997

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=93.26  E-value=0.033  Score=48.50  Aligned_cols=22  Identities=41%  Similarity=0.628  Sum_probs=19.8

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -++|.|+||+|||+|++++++.
T Consensus         6 ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            6 KVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999999864

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=93.25  E-value=0.041  Score=47.36  Aligned_cols=22  Identities=41%  Similarity=0.608  Sum_probs=19.3

Q ss_pred             ceeeEeCCCCCChhHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      --+++.|+||+|||+|++++.+
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            3589999999999999999864

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=93.22  E-value=0.038  Score=47.55  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.5

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .-+++.|++|+|||+|++++.+.
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999999875

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=93.20  E-value=0.048  Score=55.35  Aligned_cols=22  Identities=36%  Similarity=0.498  Sum_probs=20.1

Q ss_pred             eeEeCCCCCChhHHHHHHHHHh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      +.|.||+|+|||||+++|++..
T Consensus        45 vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           45 ILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             EEEECSTTSSSHHHHHHHHTSC
T ss_pred             EEEECCCCCCHHHHHHHHhCcc
Confidence            7799999999999999999863

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=93.19  E-value=0.038  Score=58.30  Aligned_cols=25  Identities=24%  Similarity=0.277  Sum_probs=22.5

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-++|.|+||+||||++++++..++
T Consensus       397 ~~I~l~GlsGSGKSTiA~~La~~L~  421 (573)
T 1m8p_A          397 FTIFLTGYMNSGKDAIARALQVTLN  421 (573)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEeecCCCCCHHHHHHHHHHHhc
Confidence            3478999999999999999999976

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=93.15  E-value=0.046  Score=47.11  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      --+++.|++|+|||+|+.++.+.
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            35899999999999999998763

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=93.14  E-value=0.039  Score=47.98  Aligned_cols=23  Identities=35%  Similarity=0.559  Sum_probs=20.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      --+++.|++|+|||+|++++.+.
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999998753

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=93.14  E-value=0.046  Score=47.91  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=20.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .-+++.|++|+|||+|+.++.+.
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999998763

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=93.14  E-value=0.04  Score=56.53  Aligned_cols=29  Identities=24%  Similarity=0.288  Sum_probs=24.0

Q ss_pred             CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          243 KAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       243 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +....-+.|.||.|+|||||++.|++.+.
T Consensus       135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~  163 (460)
T 2npi_A          135 NFEGPRVVIVGGSQTGKTSLSRTLCSYAL  163 (460)
T ss_dssp             SSSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred             eCCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence            33444588999999999999999999763

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=93.13  E-value=0.04  Score=56.09  Aligned_cols=27  Identities=22%  Similarity=0.399  Sum_probs=23.4

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .++.+++.|++|+||||++..+|..+.
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~  125 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLR  125 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            356788999999999999999998774

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=93.12  E-value=0.031  Score=57.82  Aligned_cols=30  Identities=13%  Similarity=0.052  Sum_probs=24.8

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |++...-++|.|+||+|||+++..+|....
T Consensus       238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a  267 (503)
T 1q57_A          238 GARGGEVIMVTSGSGMVMSTFVRQQALQWG  267 (503)
T ss_dssp             CCCTTCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred             ccCCCeEEEEeecCCCCchHHHHHHHHHHH
Confidence            455556689999999999999999987654

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=93.12  E-value=0.039  Score=48.23  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=20.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      --+++.|+||+|||+|++++++.
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999998863

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=93.11  E-value=0.045  Score=47.80  Aligned_cols=23  Identities=22%  Similarity=0.392  Sum_probs=20.1

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHh
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      -++|.|+||+|||+|++.+.+..
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            48999999999999998887654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=93.11  E-value=0.047  Score=47.34  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=19.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      --+++.|++|+|||+|++++.+
T Consensus        19 ~ki~v~G~~~~GKSsl~~~l~~   40 (183)
T 3kkq_A           19 YKLVVVGDGGVGKSALTIQFFQ   40 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3589999999999999999885

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=93.10  E-value=0.042  Score=50.33  Aligned_cols=24  Identities=21%  Similarity=0.308  Sum_probs=21.7

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -+.|.||+|+||||.++.++..+.
T Consensus         5 ~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            5 YIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            467889999999999999999885

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=93.09  E-value=0.065  Score=54.16  Aligned_cols=24  Identities=29%  Similarity=0.434  Sum_probs=20.9

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -+.|.||+|+|||||+++|++...
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl~~   94 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGIGN   94 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            467999999999999999998554

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=93.08  E-value=0.015  Score=53.96  Aligned_cols=23  Identities=39%  Similarity=0.463  Sum_probs=20.5

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.|.||.|+|||||.++|+..+.
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~~   52 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTALI   52 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcccc
Confidence            34789999999999999999876

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=93.07  E-value=0.019  Score=51.32  Aligned_cols=25  Identities=24%  Similarity=0.266  Sum_probs=20.2

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHh
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      ..-+.|.||+|+|||||++++++..
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3448899999999999999987543

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=93.06  E-value=0.049  Score=47.16  Aligned_cols=21  Identities=19%  Similarity=0.400  Sum_probs=19.2

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      -+++.|+||+|||+|+.++.+
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999999875

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=93.05  E-value=0.034  Score=48.86  Aligned_cols=23  Identities=35%  Similarity=0.432  Sum_probs=20.3

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .-+++.|++|+|||+|+.++.+.
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            45899999999999999999753

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=93.03  E-value=0.04  Score=54.78  Aligned_cols=26  Identities=31%  Similarity=0.406  Sum_probs=22.2

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..-+.|.||+|+|||||+++|++.+.
T Consensus        54 Gei~~IiGpnGaGKSTLlr~i~GL~~   79 (366)
T 3tui_C           54 GQIYGVIGASGAGKSTLIRCVNLLER   79 (366)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEEcCCCchHHHHHHHHhcCCC
Confidence            34478999999999999999998664

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=93.00  E-value=0.05  Score=47.71  Aligned_cols=22  Identities=41%  Similarity=0.594  Sum_probs=19.8

Q ss_pred             ceeeEeCCCCCChhHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      --+++.|++|+|||+|++++.+
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~   38 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFAD   38 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHc
Confidence            3589999999999999999875

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.96  E-value=0.056  Score=47.72  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=20.5

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      --+++.|++|+|||+|++++.+.
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45899999999999999998863

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=92.93  E-value=0.052  Score=47.46  Aligned_cols=23  Identities=35%  Similarity=0.522  Sum_probs=20.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      --+++.|+||+|||+|+.++.+.
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999999763

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=92.92  E-value=0.039  Score=54.75  Aligned_cols=25  Identities=36%  Similarity=0.517  Sum_probs=21.7

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||||+|||||+++|+....
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CEEEEECCCCccHHHHHHHHhcccc
Confidence            4578999999999999999997654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=92.92  E-value=0.034  Score=48.41  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=19.3

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -+++.|++|+|||+|+.++.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            3789999999999999998753

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=92.91  E-value=0.053  Score=46.83  Aligned_cols=23  Identities=17%  Similarity=0.271  Sum_probs=20.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      --+++.|++|+|||+|+.++.+.
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            45899999999999999998753

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=92.89  E-value=0.038  Score=52.14  Aligned_cols=23  Identities=26%  Similarity=0.557  Sum_probs=20.5

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      ..+.|.|+||+|||||++++.+.
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            45889999999999999999864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=92.88  E-value=0.054  Score=47.64  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=19.7

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -+++.|++|+|||+|++.+.+.
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            4899999999999999998763

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=92.86  E-value=0.054  Score=47.43  Aligned_cols=22  Identities=18%  Similarity=0.295  Sum_probs=19.7

Q ss_pred             ceeeEeCCCCCChhHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      .-+++.|++|+|||+|+.++.+
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            3589999999999999999875

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=92.85  E-value=0.056  Score=47.53  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=19.0

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      -++|.|++|+|||+|++.+.+
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999988775

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=92.84  E-value=0.041  Score=47.50  Aligned_cols=22  Identities=32%  Similarity=0.317  Sum_probs=19.8

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -+++.|+||+|||+|++.+++.
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999998863

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=92.83  E-value=0.054  Score=47.53  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=19.7

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -+++.|++|+|||+|++++.+.
T Consensus        24 ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999763

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=92.82  E-value=0.054  Score=47.87  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .-+++.|++|+|||+|+.++.+.
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999998753

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=92.81  E-value=0.046  Score=65.10  Aligned_cols=30  Identities=27%  Similarity=0.416  Sum_probs=25.9

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |+++++.++|+||||+|||+|+..+|....
T Consensus       379 Gl~~G~lilI~G~pGsGKTtLaLqia~~~a  408 (2050)
T 3cmu_A          379 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ  408 (2050)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            377778899999999999999999987653

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=92.81  E-value=0.024  Score=55.01  Aligned_cols=28  Identities=25%  Similarity=0.487  Sum_probs=23.6

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +...-+.|.||.|+|||||+++|++.+.
T Consensus        78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           78 MPGQTLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence            3445588999999999999999998764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=92.80  E-value=0.046  Score=48.29  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=19.9

Q ss_pred             ceeeEeCCCCCChhHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      .-+++.|+||+|||+|++++++
T Consensus        24 ~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           24 GKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3589999999999999999986

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=92.79  E-value=0.051  Score=49.18  Aligned_cols=25  Identities=40%  Similarity=0.421  Sum_probs=21.9

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      -.+|+||.|+|||++..||.-.++-
T Consensus        25 ~~~I~G~NgsGKStil~ai~~~l~g   49 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAILVGLYW   49 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            4679999999999999999877764

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=92.79  E-value=0.056  Score=47.90  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.3

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .-+++.|++|+|||+|++++.+.
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            45899999999999999998764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=92.77  E-value=0.05  Score=48.22  Aligned_cols=22  Identities=27%  Similarity=0.416  Sum_probs=19.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      --++|.|++|+|||+|+.++.+
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~   30 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYAD   30 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4589999999999999999875

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.71  E-value=0.057  Score=48.07  Aligned_cols=22  Identities=36%  Similarity=0.572  Sum_probs=19.8

Q ss_pred             ceeeEeCCCCCChhHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      .-+++.|+||+|||+|+.++.+
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4589999999999999999875

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=92.70  E-value=0.057  Score=47.47  Aligned_cols=22  Identities=32%  Similarity=0.667  Sum_probs=19.7

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -+++.|++|+|||+|++++.+.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4899999999999999998763

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=92.70  E-value=0.056  Score=53.27  Aligned_cols=24  Identities=38%  Similarity=0.495  Sum_probs=21.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHh
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      .-+.|.|+||+||||++.+++..+
T Consensus        80 ~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           80 HRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            358899999999999999999876

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=92.68  E-value=0.05  Score=47.97  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=20.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      --+++.|++|+|||+|+.++.+.
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            35899999999999999999763

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=92.68  E-value=0.057  Score=47.87  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.4

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .-+++.|++|+|||+|+.++.+.
T Consensus        29 ~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           29 YKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            45899999999999999999763

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=92.67  E-value=0.059  Score=47.44  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=20.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      --+++.|+||+|||+|++++.+.
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            35899999999999999998763

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=92.66  E-value=0.048  Score=48.72  Aligned_cols=21  Identities=29%  Similarity=0.321  Sum_probs=19.4

Q ss_pred             eeEeCCCCCChhHHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~  269 (436)
                      +|++|++|+|||++|..+|..
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            689999999999999999866

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.64  E-value=0.05  Score=47.85  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=19.9

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -++|.|++|+|||+|++++.+.
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            4899999999999999999864

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=92.63  E-value=0.042  Score=48.00  Aligned_cols=23  Identities=35%  Similarity=0.420  Sum_probs=20.0

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .-+++.|++|+|||+|+.++.+.
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999998653

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=92.57  E-value=0.046  Score=47.62  Aligned_cols=23  Identities=17%  Similarity=0.417  Sum_probs=20.1

Q ss_pred             cceeeEeCCCCCChhHHHHHHHH
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      ..-+++.|+||+|||+|++++.+
T Consensus        18 ~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           18 ELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Confidence            34689999999999999999875

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=92.52  E-value=0.056  Score=49.74  Aligned_cols=23  Identities=26%  Similarity=0.322  Sum_probs=20.4

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .-++|.|++|+|||+|++++.+.
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHcCC
Confidence            45899999999999999999863

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=92.50  E-value=0.054  Score=46.88  Aligned_cols=22  Identities=32%  Similarity=0.406  Sum_probs=19.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      .-++|.|+||+|||+|+.++.+
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            3589999999999999999874

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=92.49  E-value=0.043  Score=52.89  Aligned_cols=25  Identities=36%  Similarity=0.420  Sum_probs=21.5

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||+|+|||||+++|++...
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             CeEEEECCCCCcHHHHHHHhccccc
Confidence            3477999999999999999987654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=92.49  E-value=0.071  Score=47.42  Aligned_cols=21  Identities=19%  Similarity=0.477  Sum_probs=18.9

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      -+++.|+||+|||+|++++++
T Consensus        27 ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           27 KLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             EEEEEEETTSSHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999999864

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=92.42  E-value=0.055  Score=48.13  Aligned_cols=23  Identities=35%  Similarity=0.507  Sum_probs=20.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .-++|.|++|+|||+|+.++.+.
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999998763

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=92.36  E-value=0.041  Score=47.73  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=9.7

Q ss_pred             ceeeEeCCCCCChhHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      .-+++.|+||+|||+|+.++.+
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEEECCCCC-----------
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4589999999999999999875

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=92.35  E-value=0.057  Score=47.96  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=19.9

Q ss_pred             ceeeEeCCCCCChhHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      .-++|.|++|+|||+|++++.+
T Consensus        25 ~ki~vvG~~~~GKSsli~~l~~   46 (201)
T 3oes_A           25 RKVVILGYRCVGKTSLAHQFVE   46 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3589999999999999999886

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=92.33  E-value=0.06  Score=48.71  Aligned_cols=25  Identities=28%  Similarity=0.501  Sum_probs=21.7

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+++.|++|+|||+|+..++..+.
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            4578889999999999999998753

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.19  E-value=0.062  Score=47.17  Aligned_cols=22  Identities=32%  Similarity=0.587  Sum_probs=19.9

Q ss_pred             ceeeEeCCCCCChhHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      --+++.|++|+|||+|+.++.+
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHc
Confidence            3589999999999999999976

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=92.18  E-value=0.073  Score=47.62  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=20.5

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .-+++.|++|+|||+|+.++.+.
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            45899999999999999999864

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=92.14  E-value=0.055  Score=52.56  Aligned_cols=23  Identities=39%  Similarity=0.505  Sum_probs=20.7

Q ss_pred             cceeeEeCCCCCChhHHHHHHHH
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      .+|+||.||+|+|||++|.++..
T Consensus       147 g~gvli~G~sG~GKStlal~l~~  169 (312)
T 1knx_A          147 GVGVLLTGRSGIGKSECALDLIN  169 (312)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            57899999999999999988765

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=92.12  E-value=0.062  Score=48.26  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=20.4

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .-+++.|++|+|||+|++.+++.
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999863

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=92.09  E-value=0.071  Score=55.88  Aligned_cols=25  Identities=32%  Similarity=0.401  Sum_probs=22.5

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-++|.|+||+||||+++.++..++
T Consensus       373 ~~I~l~G~~GsGKSTia~~La~~L~  397 (546)
T 2gks_A          373 FCVWLTGLPCAGKSTIAEILATMLQ  397 (546)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEccCCCCCCHHHHHHHHHHHhh
Confidence            4478899999999999999999876

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=92.08  E-value=0.055  Score=49.70  Aligned_cols=22  Identities=27%  Similarity=0.573  Sum_probs=20.0

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -+.|.||.|+||||+++.|++.
T Consensus        22 ~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           22 TVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             EEEEECSTTSCHHHHHHTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            3678999999999999999987

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=92.06  E-value=0.11  Score=51.39  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=19.6

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -+.|.|+||+|||||.+++++.
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~  202 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGL  202 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            3779999999999999999864

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.06  E-value=0.071  Score=46.11  Aligned_cols=22  Identities=23%  Similarity=0.502  Sum_probs=19.4

Q ss_pred             cceeeEeCCCCCChhHHHHHHH
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMA  267 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA  267 (436)
                      ..-+++.|+||+|||+|+.++.
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHh
Confidence            4569999999999999998876

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=92.02  E-value=0.086  Score=52.83  Aligned_cols=25  Identities=28%  Similarity=0.550  Sum_probs=22.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+++.||||||||+|++.||+..+
T Consensus       175 Qr~~IvG~sG~GKTtLl~~Iar~i~  199 (422)
T 3ice_A          175 QRGLIVAPPKAGKTMLLQNIAQSIA  199 (422)
T ss_dssp             CEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred             cEEEEecCCCCChhHHHHHHHHHHh
Confidence            4489999999999999999998764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=91.98  E-value=0.084  Score=46.76  Aligned_cols=22  Identities=36%  Similarity=0.522  Sum_probs=19.7

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -++|.|+||+|||+|+..+++.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4889999999999999998864

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.96  E-value=0.067  Score=47.94  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=20.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .-++|.|++|+|||+|++++.+.
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            35899999999999999998763

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.92  E-value=0.062  Score=46.98  Aligned_cols=23  Identities=13%  Similarity=0.367  Sum_probs=20.4

Q ss_pred             cceeeEeCCCCCChhHHHHHHHH
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      ..-+++.|++|+|||+|++++.+
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            34689999999999999999985

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=91.88  E-value=0.074  Score=51.26  Aligned_cols=24  Identities=33%  Similarity=0.483  Sum_probs=20.7

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||+|+|||||+++|+ .+.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            457899999999999999999 554

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=91.87  E-value=0.07  Score=47.15  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=19.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      --+++.|++|+|||+|+.++.+.
T Consensus        21 ~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC-
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999998753

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=91.83  E-value=0.064  Score=46.87  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=20.0

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .-+++.|+||+|||+|++++++.
T Consensus        17 ~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           17 VRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999998753

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=91.82  E-value=0.071  Score=47.81  Aligned_cols=22  Identities=23%  Similarity=0.449  Sum_probs=19.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      --++|.|++|+|||+|++++.+
T Consensus        26 ~ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           26 IKLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHhc
Confidence            3589999999999999999875

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=91.81  E-value=0.087  Score=51.63  Aligned_cols=25  Identities=32%  Similarity=0.514  Sum_probs=21.7

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHh
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      ..-+.+.||||+||||++.+++..+
T Consensus        56 ~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           56 TLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3457889999999999999999876

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=91.81  E-value=0.079  Score=55.39  Aligned_cols=27  Identities=33%  Similarity=0.353  Sum_probs=23.0

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ...-+.|.||.|+|||||+++|++.+.
T Consensus        46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~~   72 (538)
T 1yqt_A           46 EGMVVGIVGPNGTGKSTAVKILAGQLI   72 (538)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            334588999999999999999998764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=91.73  E-value=0.076  Score=46.61  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=20.0

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -+++.|++|+|||+|++++.+.
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.72  E-value=0.075  Score=47.44  Aligned_cols=22  Identities=18%  Similarity=0.446  Sum_probs=19.9

Q ss_pred             ceeeEeCCCCCChhHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      .-+++.|++|+|||+|+.++.+
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~   47 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSK   47 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHhc
Confidence            3589999999999999999886

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=91.70  E-value=0.073  Score=50.56  Aligned_cols=22  Identities=32%  Similarity=0.517  Sum_probs=19.8

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -+.|.|+||+|||+|.+++++.
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4789999999999999999864

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=91.70  E-value=0.058  Score=46.97  Aligned_cols=22  Identities=14%  Similarity=0.335  Sum_probs=19.8

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -+++.|++|+|||+|++++.+.
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999863

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=91.69  E-value=0.1  Score=53.71  Aligned_cols=25  Identities=32%  Similarity=0.328  Sum_probs=22.5

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||.|+|||||.++|++.+.
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~   54 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALI   54 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCC
Confidence            5677999999999999999999875

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=91.65  E-value=0.064  Score=47.71  Aligned_cols=22  Identities=36%  Similarity=0.635  Sum_probs=19.7

Q ss_pred             ceeeEeCCCCCChhHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      --+++.|++|+|||+|++++.+
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           26 FKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHh
Confidence            4589999999999999999874

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=91.64  E-value=0.077  Score=49.87  Aligned_cols=22  Identities=36%  Similarity=0.490  Sum_probs=19.7

Q ss_pred             ceeeEeCCCCCChhHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      .-++|.|+||+|||+|+.++.+
T Consensus         6 ~kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            6 VKVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHC
Confidence            3488999999999999999976

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=91.56  E-value=0.07  Score=48.57  Aligned_cols=23  Identities=30%  Similarity=0.567  Sum_probs=20.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .-++|.|++|+|||+|+.++.+.
T Consensus        30 ~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           30 KTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999998753

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=91.55  E-value=0.079  Score=51.51  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=21.9

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHH
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .+|+||.|++|+|||++|.++...
T Consensus       144 g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          144 GVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHhc
Confidence            478999999999999999999874

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=91.48  E-value=0.073  Score=47.29  Aligned_cols=21  Identities=33%  Similarity=0.586  Sum_probs=18.7

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      -++|.|+||+|||+|++.+++
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999998754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=91.46  E-value=0.082  Score=46.95  Aligned_cols=23  Identities=17%  Similarity=0.401  Sum_probs=20.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .-+++.|++|+|||+|+.++.+.
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           26 KKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999998863

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=91.45  E-value=0.097  Score=47.36  Aligned_cols=23  Identities=30%  Similarity=0.505  Sum_probs=20.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      --++|.|++|+|||+|+.++.+.
T Consensus        14 ~ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           14 FKIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            35899999999999999998763

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=91.44  E-value=0.081  Score=46.73  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=19.3

Q ss_pred             ceeeEeCCCCCChhHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      --+++.|+||+|||+|+.++.+
T Consensus        30 ~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           30 MRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCS
T ss_pred             cEEEEECCCCCCHHHHHHHHHh
Confidence            3599999999999999998853

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=91.44  E-value=0.089  Score=46.35  Aligned_cols=21  Identities=29%  Similarity=0.624  Sum_probs=19.0

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      -+++.|++|+|||+|++++.+
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999999864

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=91.44  E-value=0.084  Score=46.99  Aligned_cols=23  Identities=17%  Similarity=0.294  Sum_probs=20.0

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .-++|.|++|+|||+|+..+.+.
T Consensus        30 ~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           30 FKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhhC
Confidence            35899999999999999998753

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=91.42  E-value=0.11  Score=47.20  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=21.0

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |.|-|+.|+||||.++.++..+.
T Consensus         5 I~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            5 ITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHHHHH
Confidence            66889999999999999999884

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=91.41  E-value=0.093  Score=46.01  Aligned_cols=22  Identities=18%  Similarity=0.375  Sum_probs=19.4

Q ss_pred             ceeeEeCCCCCChhHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      .-++|.|++|+|||+|+.++.+
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            4589999999999999998864

>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A

Probab=91.36  E-value=0.14  Score=46.29  Aligned_cols=59  Identities=17%  Similarity=0.180  Sum_probs=34.9

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhC---CCCcceeeEeCCCCCChhHH-HHHHHHHh
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVG---KAWKRGYLLYGPPGTGKSSL-IAAMANYL  270 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g---~~~~rg~LL~GPpGtGKT~l-a~aiA~~l  270 (436)
                      .+|+++...+.+.+.+.+.-   ...+..++...   +-..+.+++.+|+|+|||.. +-.+...+
T Consensus        14 ~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l   76 (224)
T 1qde_A           14 YKFDDMELDENLLRGVFGYG---FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI   76 (224)
T ss_dssp             CCGGGGTCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CChhhcCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence            57999988888887775421   11111111111   01235799999999999976 33444433

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=91.30  E-value=0.11  Score=48.17  Aligned_cols=25  Identities=28%  Similarity=0.555  Sum_probs=21.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+++.|.+|+||||++..+|..+.
T Consensus        15 ~i~~~~GkgGvGKTTl~~~La~~l~   39 (262)
T 1yrb_A           15 MIVVFVGTAGSGKTTLTGEFGRYLE   39 (262)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            3477899999999999999998764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=91.24  E-value=0.075  Score=47.84  Aligned_cols=22  Identities=36%  Similarity=0.558  Sum_probs=19.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      --+++.|++|+|||+|+.++.+
T Consensus        35 ~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           35 VKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            3589999999999999999875

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=91.18  E-value=0.085  Score=49.52  Aligned_cols=22  Identities=41%  Similarity=0.634  Sum_probs=19.7

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -++|.|+||+|||||..++.+.
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4789999999999999999764

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=91.15  E-value=0.092  Score=46.86  Aligned_cols=22  Identities=14%  Similarity=0.292  Sum_probs=19.6

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -+++.|+||+|||+|+..+.+.
T Consensus        11 ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999998753

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=91.10  E-value=0.095  Score=55.24  Aligned_cols=28  Identities=21%  Similarity=0.418  Sum_probs=23.6

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +++.-+.|.||.|+|||||++.+++.+.
T Consensus       367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~  394 (582)
T 3b5x_A          367 PQGKTVALVGRSGSGKSTIANLFTRFYD  394 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3445588999999999999999998764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=91.09  E-value=0.053  Score=47.56  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=19.5

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -+++.|++|+|||+|++++.+.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           23 HVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             EEEEEECTTSSHHHHHHHTSCG
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999998654

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=91.09  E-value=0.081  Score=47.03  Aligned_cols=51  Identities=16%  Similarity=0.203  Sum_probs=28.4

Q ss_pred             CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCC---CCcceeeEeCCCCCChhHHH
Q 013823          210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGK---AWKRGYLLYGPPGTGKSSLI  263 (436)
Q Consensus       210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~---~~~rg~LL~GPpGtGKT~la  263 (436)
                      +|+++...+++.+.+.+.-   ...+..++...+   -..+.+++.+|+|+|||..+
T Consensus         2 ~f~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~   55 (207)
T 2gxq_A            2 EFKDFPLKPEILEALHGRG---LTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAF   55 (207)
T ss_dssp             CGGGSCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred             ChhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHH
Confidence            4677767776666654410   111111111110   11367999999999999863

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=91.08  E-value=0.11  Score=46.80  Aligned_cols=21  Identities=24%  Similarity=0.479  Sum_probs=19.4

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      -++|.|++|+|||+|+..+.+
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~   49 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAK   49 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            489999999999999999876

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=90.99  E-value=0.067  Score=51.53  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=19.1

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .++|.||+|+|||||+++|++.
T Consensus        20 ~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999998864

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=90.98  E-value=0.11  Score=51.35  Aligned_cols=23  Identities=43%  Similarity=0.564  Sum_probs=20.1

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHh
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      -.+|+||.|+||||+..||+-.+
T Consensus        25 ~~~i~G~NGaGKTTll~ai~~al   47 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLFEAISFAL   47 (365)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999999654

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=90.96  E-value=0.084  Score=53.44  Aligned_cols=22  Identities=32%  Similarity=0.443  Sum_probs=20.0

Q ss_pred             eeEeCCCCCChhHHHHHHHHHh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      +.|.||+|+|||||++++++..
T Consensus        34 I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTCC
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            6899999999999999998754

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=90.94  E-value=0.099  Score=46.65  Aligned_cols=22  Identities=18%  Similarity=0.345  Sum_probs=19.7

Q ss_pred             ceeeEeCCCCCChhHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      --+++.|++|+|||+|+.++.+
T Consensus        31 ~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           31 IKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHHh
Confidence            4589999999999999998875

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=90.94  E-value=0.052  Score=47.97  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=4.3

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -+++.|++|+|||+|+.++.+.
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999998764

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=90.92  E-value=0.12  Score=47.22  Aligned_cols=26  Identities=23%  Similarity=0.326  Sum_probs=22.4

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      .+-|+|.+|||||++++.++. +|+++
T Consensus        11 ~iglTGgigsGKStv~~~l~~-~g~~v   36 (210)
T 4i1u_A           11 AIGLTGGIGSGKTTVADLFAA-RGASL   36 (210)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH-TTCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCcE
Confidence            467999999999999999998 88443

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=90.91  E-value=0.2  Score=49.26  Aligned_cols=24  Identities=29%  Similarity=0.483  Sum_probs=20.6

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHH
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      ..-+++.|+||+|||||++++++.
T Consensus       167 ~~~v~lvG~~gvGKSTLin~L~~~  190 (357)
T 2e87_A          167 IPTVVIAGHPNVGKSTLLKALTTA  190 (357)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHCSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            345889999999999999998764

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=90.89  E-value=0.2  Score=53.14  Aligned_cols=22  Identities=27%  Similarity=0.456  Sum_probs=20.5

Q ss_pred             eeEeCCCCCChhHHHHHHHHHh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      +.|.||+|+|||||.++|++.+
T Consensus        48 iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           48 IAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             EECCCCTTSCHHHHHHHHHSCC
T ss_pred             EEEECCCCChHHHHHHHHhCCC
Confidence            8899999999999999999865

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=90.73  E-value=0.11  Score=50.06  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=19.8

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -+.|.|+||+|||||++++.+.
T Consensus        10 ~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A           10 FIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            3789999999999999999875

>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19

Probab=90.59  E-value=0.11  Score=46.93  Aligned_cols=60  Identities=20%  Similarity=0.218  Sum_probs=34.5

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCC---CCcceeeEeCCCCCChhHHHHHHHH
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGK---AWKRGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~---~~~rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      .+..+|+++...+++.+.+.+.-   +..+..++...+   -..+.+++.+|+|+|||..+-..+-
T Consensus        11 ~~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~   73 (220)
T 1t6n_A           11 IHSSGFRDFLLKPELLRAIVDCG---FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL   73 (220)
T ss_dssp             ---CCSTTSCCCHHHHHHHHHTT---CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred             ccCCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHH
Confidence            34457899988888888775521   111111221111   1135699999999999986654443

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=90.49  E-value=0.099  Score=46.22  Aligned_cols=23  Identities=30%  Similarity=0.325  Sum_probs=19.8

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      --++|.|++|+|||+|++.+.+.
T Consensus        21 ~ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           21 PRILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            34999999999999999987664

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=90.49  E-value=0.11  Score=55.04  Aligned_cols=29  Identities=21%  Similarity=0.461  Sum_probs=24.2

Q ss_pred             CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          243 KAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       243 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++++.-+.+.||+|+|||||+++|++.+.
T Consensus       378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~  406 (598)
T 3qf4_B          378 IKPGQKVALVGPTGSGKTTIVNLLMRFYD  406 (598)
T ss_dssp             CCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            34455688999999999999999998764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=90.43  E-value=0.12  Score=49.71  Aligned_cols=25  Identities=32%  Similarity=0.534  Sum_probs=20.4

Q ss_pred             Ccce-eeEeCCCCCChhHHHHHHHHH
Q 013823          245 WKRG-YLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       245 ~~rg-~LL~GPpGtGKT~la~aiA~~  269 (436)
                      ++.| +.+.|+||+|||||+.++.+.
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            3344 779999999999999998753

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=90.43  E-value=0.13  Score=51.54  Aligned_cols=28  Identities=25%  Similarity=0.584  Sum_probs=23.0

Q ss_pred             CCcce--eeEeCCCCCChhHHHHHHHHHhc
Q 013823          244 AWKRG--YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       244 ~~~rg--~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |..+|  .++.||||||||+|+..||+...
T Consensus       171 PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~  200 (427)
T 3l0o_A          171 PIGKGQRGMIVAPPKAGKTTILKEIANGIA  200 (427)
T ss_dssp             CCBTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             cccCCceEEEecCCCCChhHHHHHHHHHHh
Confidence            34444  89999999999999999998653

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=90.42  E-value=0.26  Score=46.27  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=19.9

Q ss_pred             ceeeEeCCCCCChhHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      .-+++.|++|+|||+|+.++.+
T Consensus        40 ~~I~vvG~~g~GKSSLin~l~~   61 (270)
T 1h65_A           40 LTILVMGKGGVGKSSTVNSIIG   61 (270)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhC
Confidence            4689999999999999999985

>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*

Probab=90.40  E-value=0.082  Score=48.58  Aligned_cols=54  Identities=15%  Similarity=0.158  Sum_probs=32.9

Q ss_pred             CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCC---CCcceeeEeCCCCCChhHHH
Q 013823          207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGK---AWKRGYLLYGPPGTGKSSLI  263 (436)
Q Consensus       207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~---~~~rg~LL~GPpGtGKT~la  263 (436)
                      ...+|+++...+.+.+.+.+.-   +..+..++...+   -..+.+++.+|+|+|||..+
T Consensus        28 ~~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~   84 (237)
T 3bor_A           28 IVDNFDDMNLKESLLRGIYAYG---FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATF   84 (237)
T ss_dssp             CCCSGGGSCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHH
T ss_pred             ccCChhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence            3467999988888887765421   111111221111   11356999999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	436
d1ixza_	247	c.37.1.20 (A:) AAA domain of cell division protein	2e-22
d1r7ra3	265	c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p	8e-22
d1lv7a_	256	c.37.1.20 (A:) AAA domain of cell division protein	2e-21
d1e32a2	258	c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p	1e-11
d1svma_	362	c.37.1.20 (A:) Papillomavirus large T antigen heli	2e-11
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	7e-11
d1w44a_	321	c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta	1e-07
d1sxja2	253	c.37.1.20 (A:295-547) Replication factor C1 {Baker	6e-07
d1d2na_	246	c.37.1.20 (A:) Hexamerization domain of N-ethylmal	6e-07
d1ixsb2	239	c.37.1.20 (B:4-242) Holliday junction helicase Ruv	2e-05
d2fnaa2	283	c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo	1e-04
d1w5sa2	287	c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t	0.001
d1sxje2	252	c.37.1.20 (E:4-255) Replication factor C5 {Baker's	0.002
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.004

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

 Score = 93.8 bits (233), Expect = 2e-22
 Identities = 48/223 (21%), Positives = 82/223 (36%), Gaps = 51/223 (22%)

Query: 206 EHPS-TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIA 264
           E P  TF  +A   E K+ + + ++ FL+    +  +G    +G LL GPPG GK+ L  
Sbjct: 2   EAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 60

Query: 265 AMANYLSVE--------------------------------------------MKDRQND 280
           A+A    V                                              + R + 
Sbjct: 61  AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 120

Query: 281 GASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSY 340
                   + TL+ +L  +DG         +++  TN  + +DPALLRPGR D  I +  
Sbjct: 121 VGGGNDEREQTLNQLLVEMDGFEKDTA--IVVMAATNRPDILDPALLRPGRFDRQIAIDA 178

Query: 341 CTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTD-VTPAEVA 382
             V G + +   +   K  +  +  ++  L + T     A++ 
Sbjct: 179 PDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFVGADLE 219

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.2 bits (228), Expect = 8e-22
 Identities = 47/263 (17%), Positives = 87/263 (33%), Gaps = 56/263 (21%)

Query: 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 269
           T++ +    ++K+ + + +   +   + + + G    +G L YGPPG GK+ L  A+AN 
Sbjct: 5   TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 64

Query: 270 LSV--------------------------------------------EMKDRQNDGASVG 285
                                                            K R  +    G
Sbjct: 65  CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG 124

Query: 286 SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHG 345
                 ++ IL  +DG+ +       I+  TN  + IDPA+LRPGR+D  I +       
Sbjct: 125 GAADRVINQILTEMDGMSTKKN--VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 182

Query: 346 FKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEELMKADDADVALEGLVNFLKRK 405
              +    L  +    +   ++E L + T+            AD  ++        ++  
Sbjct: 183 RVAILKANL--RKSPVAKDVDLEFLAKMTN--------GFSGADLTEICQRACKLAIRES 232

Query: 406 RIQADESKNNDVKGEEANEVEHE 428
                  +        A EVE +
Sbjct: 233 IESEIRRERERQTNPSAMEVEED 255

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

 Score = 90.7 bits (225), Expect = 2e-21
 Identities = 42/180 (23%), Positives = 70/180 (38%), Gaps = 47/180 (26%)

Query: 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 269
           TF  +A   E K+ + + ++ +LR    ++++G    +G L+ GPPGTGK+ L  A+A  
Sbjct: 10  TFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68

Query: 270 LSVE--------------------------------------------MKDRQNDGASVG 285
             V                                              + R        
Sbjct: 69  AKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGH 128

Query: 286 SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHG 345
              + TL+ +L  +DG   +  +  I++  TN  + +DPALLRPGR D  + +    V G
Sbjct: 129 DEREQTLNQMLVEMDGFEGN--EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 186

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.4 bits (150), Expect = 1e-11
 Identities = 39/179 (21%), Positives = 62/179 (34%), Gaps = 43/179 (24%)

Query: 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 269
            +D +    +    I + ++  LR    ++ +G    RG LLYGPPGTGK+ +  A+AN 
Sbjct: 2   GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 61

Query: 270 LS------------------VEMKDRQ-----------------------NDGASVGSNT 288
                                E   R+                           + G   
Sbjct: 62  TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE 121

Query: 289 KLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFK 347
           +  +S +L  +D          I++  TN    IDPAL R GR D  +++      G  
Sbjct: 122 RRIVSQLLTLMD--GLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 178

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

 Score = 62.8 bits (152), Expect = 2e-11
 Identities = 38/319 (11%), Positives = 72/319 (22%), Gaps = 86/319 (26%)

Query: 130 CKEPQNNHSGEKRYFELSFHKKHKQTVICYYLPHVVERAKEIKQEEKVVKLYNR------ 183
            K  +       +Y E  +           +      +    +Q    V    R      
Sbjct: 38  LKCIKKEQPSHYKYHEKHYANAA------IFADSK-NQKTICQQAVDTVLAKKRVDSLQL 90

Query: 184 ---------------ECPYDDDDDGGGGGGMWGSINLEHPSTFDTLAMDPELKQMILDDL 228
                                   G      W +        +    +  ++  ++ D L
Sbjct: 91  TREQMLTNRFNDLLDRMDIMFGSTGSADIEEWMAG-----VAWLHCLLP-KMDSVVYDFL 144

Query: 229 DRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----------SVEMKDR 277
              +             KR +L  GP  +GK++L AA+                    + 
Sbjct: 145 KCMVY--------NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFEL 196

Query: 278 QN------------DGASVGSNTKLT------LSGILNFIDGLWSSCGDE---------- 309
                          G    S    +      L  + +++DG      ++          
Sbjct: 197 GVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIF 256

Query: 310 RIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEG 369
              + T N             R    I+          +  S +L  K    S    +  
Sbjct: 257 PPGIVTMN---EYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLM 313

Query: 370 LIQSTDVTPAEVAEELMKA 388
           LI       AE A+ +   
Sbjct: 314 LIWYR--PVAEFAQSIQSR 330

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 60.4 bits (145), Expect = 7e-11
 Identities = 34/266 (12%), Positives = 69/266 (25%), Gaps = 59/266 (22%)

Query: 217 DPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK- 275
           D + +  + D+L+  ++ K+            +LL G PG+GK+SL +A+       +  
Sbjct: 8   DKQFENRLNDNLEELIQGKK-----AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIV 62

Query: 276 ----------------------------------------------------DRQNDGAS 283
                                                               +       
Sbjct: 63  IDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTD 122

Query: 284 VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTV 343
           V   T   L            +       + T    E +        R            
Sbjct: 123 VPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVK 182

Query: 344 HGFKVLASNYL-GIKGKSHSLFGEIEGLIQSTDVTPAEVAEELMKADDADVALEGLVNFL 402
           +    L + +  G+         E   L  S +       E L K  +  V+ + +   L
Sbjct: 183 NLPTNLETLHKTGLFSDIRLYNREGVKLYSSLETPSISPKETLEKELNRKVSGKEIQPTL 242

Query: 403 KRKRIQADESKNNDVKGEEANEVEHE 428
           +R   +   +K+ +    +A + + E
Sbjct: 243 ERIEQKMVLNKHQETPEFKAIQQKLE 268

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

 Score = 50.8 bits (121), Expect = 1e-07
 Identities = 23/191 (12%), Positives = 53/191 (27%), Gaps = 49/191 (25%)

Query: 219 ELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMA-------NYLS 271
                +  +L              +      ++ G   +GK+ L+ A+         Y +
Sbjct: 97  GWLVDLTGELVGCSPVV-AEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYAT 155

Query: 272 VEMKD-----------------------------------RQNDGASVGSNTKLTLSGIL 296
           V   +                                       G +           +L
Sbjct: 156 VRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLL 215

Query: 297 NFIDGLWSSCGDERIIVFTTNHKE---RIDPALLRPGRMDVHINMSYCTVHG-FKVLASN 352
           + I  + +S G   +++ + N      +I   +    R +    +    V G ++VL   
Sbjct: 216 SDIGAMAASRG--CVVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRT 273

Query: 353 YLGIKGKSHSL 363
             G++  +H+L
Sbjct: 274 GEGLQRLTHTL 284

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.2 bits (113), Expect = 6e-07
 Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 208 PSTFDTLAMDPELKQMILDDLDRFLRRKE----FYRRVGKAWKRGYLLYGPPGTGKSSLI 263
           P+    +  +      + + L  +   K+       + G    R  +LYGPPG GK++  
Sbjct: 10  PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAA 69

Query: 264 AAMANYLSVEMKDRQN 279
             +A  L  ++ ++  
Sbjct: 70  HLVAQELGYDILEQNA 85

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 48.0 bits (113), Expect = 6e-07
 Identities = 21/163 (12%), Positives = 50/163 (30%), Gaps = 47/163 (28%)

Query: 217 DPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV---- 272
              + + +LDD +  +   +  +   +      LL GPP +GK++L A +A   +     
Sbjct: 15  GDPVTR-VLDDGELLV---QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIK 70

Query: 273 -------------------------------------EMKDRQNDGASVGSNTKLTLSGI 295
                                                +++   +        + L L  +
Sbjct: 71  ICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQAL 130

Query: 296 LNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINM 338
           L  +         + +I+ TT+ K+ +    +        I++
Sbjct: 131 LVLLKKAPPQG-RKLLIIGTTSRKDVLQEMEML-NAFSTTIHV 171

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 38/241 (15%), Positives = 75/241 (31%), Gaps = 39/241 (16%)

Query: 214 LAMDPE-LKQMI-LDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271
           LA+ P+ L + I  + L + LR      +  K      LL+GPPG GK++L   +A+ L 
Sbjct: 1   LALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG 60

Query: 272 VEMK--------------DRQNDGASVGSNTKL-------------TLSGILNFIDGLWS 304
           V ++                  +    G    +                 + +F+  +  
Sbjct: 61  VNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVI 120

Query: 305 SCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLF 364
             G     +     +  +  A  RPG +   +   +  V   +           +     
Sbjct: 121 GQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEE---LAQGVMRD 177

Query: 365 GEIEGLIQSTDVTPAEVAEELMKADDADVALEGLVNFLKRKRIQADESKNNDVKGEEANE 424
             + G+  + +      A E+ +       +       +R R  A  +    +  E A E
Sbjct: 178 ARLLGVRITEE-----AALEIGRRSRGT--MRVAKRLFRRVRDFAQVAGEEVITRERALE 230

Query: 425 V 425
            
Sbjct: 231 A 231

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 226 DDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE 273
           D+   F  R++   ++        L+ G   TGKSS+I    N L++ 
Sbjct: 9   DNRKDFFDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLP 56

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 8/46 (17%), Positives = 13/46 (28%)

Query: 225 LDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 270
            + L R    +             Y   G  G GK++L       +
Sbjct: 25  AEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 70

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 30/144 (20%), Positives = 46/144 (31%), Gaps = 17/144 (11%)

Query: 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMA 267
           P + + L+ + EL       L     +     R         LLYGP GTGK +   A+ 
Sbjct: 7   PKSLNALSHNEELTNF----LKSLSDQP----RDLPH----LLLYGPNGTGKKTRCMALL 54

Query: 268 NYL---SVEMKDRQNDGASVGSNTKLTLSGILN--FIDGLWSSCGDERIIVFTTNHKERI 322
             +    V             SN KL L+ + +   ++   S  G+   IV     KE  
Sbjct: 55  ESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVA 114

Query: 323 DPALLRPGRMDVHINMSYCTVHGF 346
               +        +   Y  V   
Sbjct: 115 QMEQVDFQDSKDGLAHRYKCVIIN 138

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 35.7 bits (81), Expect = 0.004
 Identities = 20/160 (12%), Positives = 49/160 (30%), Gaps = 7/160 (4%)

Query: 253 GPPGTGKSSLIAAMANYLS---VEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDE 309
              GTGK++L+  +   L    +     ++    +  +     S  L       +    +
Sbjct: 9   AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIVASQ 68

Query: 310 RIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI----KGKSHSLFG 365
           +     T   +  +  L           +    V GFK      + +     G       
Sbjct: 69  QRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPEELV 128

Query: 366 EIEGLIQSTDVTPAEVAEELMKADDADVALEGLVNFLKRK 405
               +I      P  +   L+  +D +   + +V +++++
Sbjct: 129 IDRHVIAVASDVPLNLDVALLDINDVEGLADFVVEWMQKQ 168

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	436
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.97
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	99.97
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	99.97
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.96
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	99.74
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.7
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	99.69
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	99.64
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	99.62
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	99.56
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	99.51
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	99.49
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	99.49
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	99.48
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	99.46
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	99.41
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	99.35
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.09
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	99.09
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	99.07
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	99.01
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.88
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.71
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.69
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.62
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.62
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	98.61
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	98.42
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.26
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	98.21
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	98.21
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.2
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.98
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.89
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.78
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.72
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.72
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.66
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.65
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.64
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.63
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.59
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.59
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.5
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.48
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.45
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.45
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.39
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.37
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.37
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.35
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.34
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	97.32
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.29
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	97.24
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.22
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.22
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.22
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.22
d1tuea_	205	Replication protein E1 helicase domain {Human papi	97.19
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.18
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.17
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.14
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.14
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.1
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.07
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.06
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.03
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.92
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.9
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.82
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.76
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	96.75
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.73
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.7
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.68
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.61
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.46
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.43
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.22
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.17
d1okkd2	207	GTPase domain of the signal recognition particle r	96.12
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.07
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.91
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.9
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.87
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	95.86
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.72
d1vmaa2	213	GTPase domain of the signal recognition particle r	95.65
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.65
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.63
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.61
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.5
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.39
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.32
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.29
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.25
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.22
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.21
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.15
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.13
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.09
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.09
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.06
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.03
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	94.95
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.8
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.79
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.74
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	94.68
d1nrjb_	209	Signal recognition particle receptor beta-subunit	94.62
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.58
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	94.54
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	94.51
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	94.49
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.47
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.46
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	94.42
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	94.4
d2awna2	232	Maltose transport protein MalK, N-terminal domain	94.38
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	94.35
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.34
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	94.33
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.32
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	94.29
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	94.24
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	94.17
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	94.16
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	94.12
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	94.09
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	94.08
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	94.07
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	94.03
d1g2912	240	Maltose transport protein MalK, N-terminal domain	94.02
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	94.02
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.01
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	94.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	93.98
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	93.97
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	93.91
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	93.91
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	93.81
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	93.79
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	93.76
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	93.72
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	93.7
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	93.69
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	93.69
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	93.67
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	93.66
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	93.64
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	93.64
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	93.64
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	93.64
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.59
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.57
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	93.52
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	93.48
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	93.48
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	93.48
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.43
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	93.4
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	93.3
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.27
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	93.22
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	93.21
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	93.11
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	93.11
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	93.1
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	93.08
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	93.07
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	93.0
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	92.92
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	92.89
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	92.88
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	92.85
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	92.83
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	92.78
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	92.78
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	92.77
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	92.73
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.72
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	92.71
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	92.68
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	92.64
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	92.6
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	92.57
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	92.57
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	92.49
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	92.47
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	92.45
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	92.38
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	92.33
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	92.31
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	92.19
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	92.15
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	92.15
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	92.06
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	91.98
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	91.96
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	91.94
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	91.91
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	91.88
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	91.74
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	91.67
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	91.59
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	91.56
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	91.53
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	91.39
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	91.33
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	91.32
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	91.16
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	91.1
d1xpua3	289	Transcription termination factor Rho, ATPase domai	90.62
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	90.57
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	90.27
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	89.44
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	89.42
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	89.11
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	88.96
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	88.42
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	88.14
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	87.55
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	87.4
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	87.25
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	87.03
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	87.01
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	86.3
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	86.0
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	85.21
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	85.08
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	84.78
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	84.62
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	84.43
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	84.38
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	83.95
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	83.5
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	83.32
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	82.95
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	82.54
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	82.53
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	82.29
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	82.14
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	81.76
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	80.95
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	80.62
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	80.15
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	80.09

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.7e-31  Score=254.88  Aligned_cols=174  Identities=26%  Similarity=0.306  Sum_probs=140.7

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc----------
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ----------  278 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~----------  278 (436)
                      .+|+||+|.++.|++|.+.+..++.+++.|.+.|.++++|+|||||||||||++++++|++++.++....          
T Consensus         1 ~~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g   80 (258)
T d1e32a2           1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG   80 (258)
T ss_dssp             CCGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTT
T ss_pred             CChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhcccccc
Confidence            3799999999999999999999999999999999999999999999999999999999999993322111          


Q ss_pred             ---------------CCCC----------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCcccc
Q 013823          279 ---------------NDGA----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALL  327 (436)
Q Consensus       279 ---------------~~~~----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~All  327 (436)
                                     ..++                ..++.....++.+++.+++....  ++++||+|||+|+.+|||++
T Consensus        81 ~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~vlvi~tTn~~~~ld~al~  158 (258)
T d1e32a2          81 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALR  158 (258)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCS--SCEEEEEEESCGGGSCGGGT
T ss_pred             cHHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhcccccccccc--CCccEEEeCCCccccchhhh
Confidence                           1110                11223344567778888887654  45999999999999999999


Q ss_pred             CCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          328 RPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       328 RpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      ||||||.+|+|++|+.++|..|++.+++...  .....++..++..+ ++|++||...+.
T Consensus       159 r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~--~~~~~~~~~la~~t~G~s~adl~~lv~  216 (258)
T d1e32a2         159 RFGRFDREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVANETHGHVGADLAALCS  216 (258)
T ss_dssp             STTSSCEEEECCCCCHHHHHHHHHHTTTTSC--BCTTCCHHHHHHHCTTCCHHHHHHHHH
T ss_pred             hcccccceeECCCCCHHHHHHHhhhhccCcc--cccccchhhhhhcccCCCHHHHHHHHH
Confidence            9999999999999999999999999997642  22223456666654 599999988764

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=2.2e-31  Score=252.49  Aligned_cols=176  Identities=26%  Similarity=0.339  Sum_probs=138.7

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc--------
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR--------  277 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r--------  277 (436)
                      .|+.+|+||+|.+++|++|.+. ..++.+++.|.++|..+++|+|||||||||||++|++||++++.++...        
T Consensus         3 ~p~~~~~di~G~~~~k~~l~~~-i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~   81 (247)
T d1ixza_           3 APKVTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM   81 (247)
T ss_dssp             CCSCCGGGCCSCHHHHHHHHHH-HHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred             CCCCcHHHHccHHHHHHHHHHH-HHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhhc
Confidence            3456999999999999999775 4578899999999999999999999999999999999999999322111        


Q ss_pred             -----------------cCCCC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823          278 -----------------QNDGA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER  321 (436)
Q Consensus       278 -----------------~~~~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~  321 (436)
                                       ...++                   .........++.||++||++...  ..++||+|||+|+.
T Consensus        82 ~~g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~--~~vivi~tTn~~~~  159 (247)
T d1ixza_          82 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD--TAIVVMAATNRPDI  159 (247)
T ss_dssp             CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT--CCEEEEEEESCGGG
T ss_pred             cccHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCC--CCEEEEEeCCCccc
Confidence                             11111                   00111234677899999998654  45899999999999


Q ss_pred             CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      ||++++||||||.+|+|+.|+.++|..||+.++....  .....++..++..+ ++|+++|...+.
T Consensus       160 ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~--~~~~~~~~~la~~t~g~s~~di~~lv~  223 (247)
T d1ixza_         160 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP--LAEDVDLALLAKRTPGFVGADLENLLN  223 (247)
T ss_dssp             SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred             cCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccC--CccccCHHHHHHHCCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999997653  22223355566554 599999988663

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=4.4e-31  Score=251.59  Aligned_cols=175  Identities=25%  Similarity=0.347  Sum_probs=135.0

Q ss_pred             CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCC------
Q 013823          207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQND------  280 (436)
Q Consensus       207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~------  280 (436)
                      .+.+|+||+|.+++|++|.+.+ .++.+++.|+++|..+++|+|||||||||||++|+++|++++.++......      
T Consensus         7 ~~~t~~Di~Gl~~~k~~l~e~v-~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~~~   85 (256)
T d1lv7a_           7 IKTTFADVAGCDEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF   85 (256)
T ss_dssp             SCCCGGGSCSCHHHHHHTHHHH-HHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSC
T ss_pred             CCCCHHHHhchHHHHHHHHHHH-HHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhhcc
Confidence            4579999999999999998866 478889999999999999999999999999999999999999333221111      


Q ss_pred             -------------------CC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCC
Q 013823          281 -------------------GA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERI  322 (436)
Q Consensus       281 -------------------~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~l  322 (436)
                                         ++                   ........+++.||+.||++...  ++++||+|||+|+.|
T Consensus        86 ~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~--~~v~vIatTn~~~~l  163 (256)
T d1lv7a_          86 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN--EGIIVIAATNRPDVL  163 (256)
T ss_dssp             CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS--SCEEEEEEESCTTTS
T ss_pred             hhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCC--CCEEEEEeCCCcccC
Confidence                               00                   00112234567899999998654  459999999999999


Q ss_pred             CccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823          323 DPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM  386 (436)
Q Consensus       323 D~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~  386 (436)
                      |||++||||||.+|+|+.|+.++|..|++.++....  .....++..++..+ ++|++||...+.
T Consensus       164 d~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~--~~~~~~~~~la~~t~G~s~adi~~l~~  226 (256)
T d1lv7a_         164 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARGTPGFSGADLANLVN  226 (256)
T ss_dssp             CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred             CHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCC--cCcccCHHHHHHhCCCCCHHHHHHHHH
Confidence            999999999999999999999999999999997653  22233455666654 599999987764

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.2e-30  Score=250.08  Aligned_cols=175  Identities=23%  Similarity=0.343  Sum_probs=134.3

Q ss_pred             CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc---------
Q 013823          208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ---------  278 (436)
Q Consensus       208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~---------  278 (436)
                      ..+|++|+|.+++|++|.+.+..++.+++.|...|.++++|+|||||||||||++|+++|++++.+++...         
T Consensus         3 ~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~~~   82 (265)
T d1r7ra3           3 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF   82 (265)
T ss_dssp             CCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTSCT
T ss_pred             CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhccc
Confidence            45999999999999999999999999999999999999999999999999999999999999993322111         


Q ss_pred             ----------------CCCC----------------CCC---CCcceeecceeecccCcccCCCCeEEEEEecCCcCCCC
Q 013823          279 ----------------NDGA----------------SVG---SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERID  323 (436)
Q Consensus       279 ----------------~~~~----------------~~~---~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD  323 (436)
                                      ..++                ...   ....++++.|++.||++...  ++++||+|||+++.||
T Consensus        83 ~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~v~vi~ttn~~~~ld  160 (265)
T d1r7ra3          83 GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDIID  160 (265)
T ss_dssp             TTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC--------CCEEEECCBSCTTTS
T ss_pred             cchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCC--CCEEEEEeCCCchhCC
Confidence                            0000                000   11233568899999998764  3499999999999999


Q ss_pred             ccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhc-CCCCHHHHHHHHh
Q 013823          324 PALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM  386 (436)
Q Consensus       324 ~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~-~~~tpaei~~~l~  386 (436)
                      ||++||||||.+|+|+.|+.++|..||+.++.......  ..+++.++.. .++|++||...+.
T Consensus       161 ~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~~~--~~~l~~la~~t~g~s~~di~~lv~  222 (265)
T d1r7ra3         161 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK--DVDLEFLAKMTNGFSGADLTEICQ  222 (265)
T ss_dssp             CGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC------CCCCHHHHHHHCSSCCHHHHHHHH
T ss_pred             HHHhCCCCccEEEEecchHHHHHHHHHHHHhccCCchh--hhhHHHHHhcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999987542111  1123444443 3599999987764

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=5.4e-18  Score=157.58  Aligned_cols=142  Identities=18%  Similarity=0.190  Sum_probs=97.6

Q ss_pred             CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCC-
Q 013823          206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASV-  284 (436)
Q Consensus       206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~-  284 (436)
                      -+|.+|++++|++++++.|...+......        .....++|||||||||||++|+++|++++.+....+...... 
T Consensus         3 ~RP~~~~divGqe~~~~~l~~~i~~~~~~--------~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~~~~~~~   74 (238)
T d1in4a2           3 LRPKSLDEFIGQENVKKKLSLALEAAKMR--------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ   74 (238)
T ss_dssp             TSCSSGGGCCSCHHHHHHHHHHHHHHHHH--------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH
T ss_pred             CCCCcHHHcCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCcHHHHHHHHHhccCCCcccccCcccccH
Confidence            35889999999999999998887643321        234468999999999999999999999995543222111100 


Q ss_pred             ---------------------CCCcceeecceeecccCcc--------------cCCCCeEEEEEecCCcCCCCccccCC
Q 013823          285 ---------------------GSNTKLTLSGILNFIDGLW--------------SSCGDERIIVFTTNHKERIDPALLRP  329 (436)
Q Consensus       285 ---------------------~~~~~~~~s~LL~~ldg~~--------------~~~~~~~ivI~TTN~~~~lD~AllRp  329 (436)
                                           +...+.....++..++...              ......+++|++||++..+++++++ 
T Consensus        75 ~~~~~~~~~~~~~~~~~ide~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~at~~~~~~~~~~~~-  153 (238)
T d1in4a2          75 GDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS-  153 (238)
T ss_dssp             HHHHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT-
T ss_pred             HHHHHHHHhhccCCchHHHHHHHhhhHHHhhcccceeeeeeeeeecCcccccccccCCCCeEEEEecCCCcccccccee-
Confidence                                 0000000001111111000              0011357899999999999999999 


Q ss_pred             CceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          330 GRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       330 GR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                       ||+..+.++.|+.+++..++..+....
T Consensus       154 -r~~~~~~~~~~~~~~~~~~l~~~~~~~  180 (238)
T d1in4a2         154 -RFGIILELDFYTVKELKEIIKRAASLM  180 (238)
T ss_dssp             -TCSEEEECCCCCHHHHHHHHHHHHHHT
T ss_pred             -eeeEEEEecCCCHHHHHHHHHHhhhhc
Confidence             999999999999999999999887765

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.70  E-value=2.5e-18  Score=161.76  Aligned_cols=131  Identities=18%  Similarity=0.190  Sum_probs=87.9

Q ss_pred             cccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCC------------
Q 013823          214 LAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDG------------  281 (436)
Q Consensus       214 i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~------------  281 (436)
                      +++..+-.+.|.+.+..+.....   .....+++|+|||||||||||++|++||++++.++......+            
T Consensus        11 ~i~~~~~i~~i~~~~~~~~~~~~---~~~~~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g~~~~~~~~   87 (246)
T d1d2na_          11 IIKWGDPVTRVLDDGELLVQQTK---NSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQ   87 (246)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHH---HCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHH
T ss_pred             CcCcCHHHHHHHHHHHHHHHHHh---ccCCCCCeEEEEECcCCCCHHHHHHHHhhcccccccccccccccccccccchhh
Confidence            45544556666677776665432   222345789999999999999999999999994433221110            


Q ss_pred             --------------C---------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCce
Q 013823          282 --------------A---------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRM  332 (436)
Q Consensus       282 --------------~---------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~  332 (436)
                                    +               ......+..++.|+..+|+.... +.+++||+|||+++.||++.++ +||
T Consensus        88 ~i~~if~~A~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~tTn~~~~ld~~~~~-~rF  165 (246)
T d1d2na_          88 AMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQ-GRKLLIIGTTSRKDVLQEMEML-NAF  165 (246)
T ss_dssp             HHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCST-TCEEEEEEEESCHHHHHHTTCT-TTS
T ss_pred             hhhhhhhhhhhcccceeehhhhhhHhhhcccccchhHHHHHHHHHHhcCCCcc-ccceeeeeccCChhhccchhhc-Ccc
Confidence                          0               00122345566788888887543 5678999999999999976554 599


Q ss_pred             eEEEEcCCCCHHHHHHHHH
Q 013823          333 DVHINMSYCTVHGFKVLAS  351 (436)
Q Consensus       333 d~~I~~~~p~~~~r~~i~~  351 (436)
                      +.+|++|.+  .+|.++++
T Consensus       166 ~~~i~~P~~--~~r~~il~  182 (246)
T d1d2na_         166 STTIHVPNI--ATGEQLLE  182 (246)
T ss_dssp             SEEEECCCE--EEHHHHHH
T ss_pred             ceEEecCCc--hhHHHHHH
Confidence            999998544  34444544

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=6.7e-17  Score=150.27  Aligned_cols=141  Identities=19%  Similarity=0.208  Sum_probs=96.2

Q ss_pred             CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCC--
Q 013823          207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASV--  284 (436)
Q Consensus       207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~--  284 (436)
                      +|.+|++++|++++++.+...+.....        +...+.++|||||||||||++|+++|++++.++...+......  
T Consensus         4 RP~~~ddivGq~~~~~~L~~~i~~~~~--------~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~~~~~   75 (239)
T d1ixsb2           4 RPKTLDEYIGQERLKQKLRVYLEAAKA--------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPG   75 (239)
T ss_dssp             CCCSGGGSCSCHHHHHHHHHHHHHHTT--------SSSCCCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTCCSHH
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCccccch
Confidence            688999999999999999887753321        2334578999999999999999999999995544333222100  


Q ss_pred             ---------------------CCCcceeecceeecccCc--------------ccCCCCeEEEEEecCCcCCCCccccCC
Q 013823          285 ---------------------GSNTKLTLSGILNFIDGL--------------WSSCGDERIIVFTTNHKERIDPALLRP  329 (436)
Q Consensus       285 ---------------------~~~~~~~~s~LL~~ldg~--------------~~~~~~~~ivI~TTN~~~~lD~AllRp  329 (436)
                                           +...+.....++..++..              .......+++|++||++...+++.+| 
T Consensus        76 ~~~~~~~~~~~~~~i~~iDe~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-  154 (239)
T d1ixsb2          76 DLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS-  154 (239)
T ss_dssp             HHHHHHHTTCCTTCEEEEETGGGCCHHHHHHHHHHHHHSEEEEECSCTTCCCEEEEECCCCEEEEEESCCSSCSCGGGG-
T ss_pred             hhHHHHHhhccCCCeeeeecccccchhHHHhhhhhhhhhhhhhhhccchhhhhcccCCCCEEEEeeccCcccccchhhc-
Confidence                                 000000001111111100              00011236788899999999999999 


Q ss_pred             CceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          330 GRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       330 GR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                       |+...+.+..|+.+++..++...+...
T Consensus       155 -~~~~~~~~~~~~~~~~~~i~~~~~~~~  181 (239)
T d1ixsb2         155 -RFGIVEHLEYYTPEELAQGVMRDARLL  181 (239)
T ss_dssp             -GCSEEEECCCCCHHHHHHHHHHHHGGG
T ss_pred             -ccceeeEeeccChhhhhHHHHHHHHHh
Confidence             888899999999999999988877654

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=99.64  E-value=1.6e-19  Score=175.36  Aligned_cols=116  Identities=15%  Similarity=0.148  Sum_probs=83.6

Q ss_pred             HHHHhCCCCcceeeE-eCCCCCChhHHHHHHHHHhc--chhhccc-----------------------------------
Q 013823          237 FYRRVGKAWKRGYLL-YGPPGTGKSSLIAAMANYLS--VEMKDRQ-----------------------------------  278 (436)
Q Consensus       237 ~~~~~g~~~~rg~LL-~GPpGtGKT~la~aiA~~l~--~~~~~r~-----------------------------------  278 (436)
                      .++.+|...++|+|| |||||||||++|+++|++++  ..+....                                   
T Consensus       113 ~~~~~~~~~~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~~~ilf~DEid  192 (321)
T d1w44a_         113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLK  192 (321)
T ss_dssp             EEEETTEEEESEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCT
T ss_pred             HHHHhhcccCCceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHHHhhccEEEeehhh
Confidence            345556667788665 89999999999999999986  1111110                                   


Q ss_pred             -----CCCCCCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCC----CCccccCCCceeEEEEcCCCCHHHHHHH
Q 013823          279 -----NDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER----IDPALLRPGRMDVHINMSYCTVHGFKVL  349 (436)
Q Consensus       279 -----~~~~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~----lD~AllRpGR~d~~I~~~~p~~~~r~~i  349 (436)
                           ...........+++++||..|||+....  +++||+|||+ +.    ||++++||||||++|++++|+.++|.+|
T Consensus       193 ~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~--~v~viaatN~-~~~~~~i~~~~~r~~Rf~~~v~v~~pd~~~r~~i  269 (321)
T d1w44a_         193 NVIGAAGGNTTSGGISRGAFDLLSDIGAMAASR--GCVVIASLNP-TSNDDKIVELVKEASRSNSTSLVISTDVDGEWQV  269 (321)
T ss_dssp             TTC-----------CCHHHHHHHHHHHHHHHHH--TCEEEEECCC-CCCCHHHHHHHHHHHHHSCSEEEEECSSTTEEEE
T ss_pred             hhccccccCCCCCcchhhhhhhhhhccccccCC--CeEEEEeCCC-cccccchhhhhhccCcccceeecCCCChHHHHHH
Confidence                 0000112334568899999999998753  4999999994 44    5566689999999999999999999888


Q ss_pred             HHHHhc
Q 013823          350 ASNYLG  355 (436)
Q Consensus       350 ~~~~l~  355 (436)
                      +..+..
T Consensus       270 l~~~~~  275 (321)
T d1w44a_         270 LTRTGE  275 (321)
T ss_dssp             EEECBT
T ss_pred             HHHhcc
Confidence            876643

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=5.5e-16  Score=144.74  Aligned_cols=149  Identities=15%  Similarity=0.225  Sum_probs=93.8

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHH----HHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCC
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKE----FYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQND  280 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~----~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~  280 (436)
                      ...|.+|++|+|+++.+++|.+.+..+.....    .+...+..+.+++|||||||||||++|+++|++++.+.......
T Consensus         7 ky~P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~~~~   86 (253)
T d1sxja2           7 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS   86 (253)
T ss_dssp             HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred             CcCCCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhhhhccccc
Confidence            46789999999999999999998876554322    11233456667899999999999999999999998443222111


Q ss_pred             CC--------------CC-------------CCCcceeecceeecccCcc--------------cCCCCeEEEEEecCCc
Q 013823          281 GA--------------SV-------------GSNTKLTLSGILNFIDGLW--------------SSCGDERIIVFTTNHK  319 (436)
Q Consensus       281 ~~--------------~~-------------~~~~~~~~s~LL~~ldg~~--------------~~~~~~~ivI~TTN~~  319 (436)
                      ..              ..             ........--++...|.+.              ......++++.+++..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~~~~~~  166 (253)
T d1sxja2          87 DVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNL  166 (253)
T ss_dssp             SCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCTTS
T ss_pred             cchhhHHHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccchhhhhHHHhhhhcccccccccccccccc
Confidence            10              00             0000000011222222221              1111234555555665


Q ss_pred             CCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          320 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       320 ~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      ..+++  +|  |+...|+|+.|+.+++..+++..+...
T Consensus       167 ~~~~~--l~--~~~~~i~f~~~~~~~i~~~l~~i~~~e  200 (253)
T d1sxja2         167 PKMRP--FD--RVCLDIQFRRPDANSIKSRLMTIAIRE  200 (253)
T ss_dssp             STTGG--GT--TTSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred             ccccc--cc--ceeeeeeccccchhHHHHHHHHHHHHh
Confidence            66664  44  566899999999999999999887543

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.56  E-value=5.5e-16  Score=150.30  Aligned_cols=139  Identities=14%  Similarity=0.235  Sum_probs=89.9

Q ss_pred             cccChhHHHHHHHHHHHHHhhHHHHHHh-CCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCC-----------
Q 013823          214 LAMDPELKQMILDDLDRFLRRKEFYRRV-GKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDG-----------  281 (436)
Q Consensus       214 i~g~~~~k~~i~~~l~~~l~~~~~~~~~-g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~-----------  281 (436)
                      |+|+++.|+.|...+..+++........ ...+++|+||+||||||||+||++||++++..+.......           
T Consensus        16 ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~~~~~~~~~   95 (309)
T d1ofha_          16 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEV   95 (309)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGST
T ss_pred             ccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccccchhcccccccccceeEeeec
Confidence            7899999999988775544322111111 0125689999999999999999999999983321111000           


Q ss_pred             ---------------------C-----C-------CC-CC----cceeecceeecccCcccCCCC------eEEEEEe--
Q 013823          282 ---------------------A-----S-------VG-SN----TKLTLSGILNFIDGLWSSCGD------ERIIVFT--  315 (436)
Q Consensus       282 ---------------------~-----~-------~~-~~----~~~~~s~LL~~ldg~~~~~~~------~~ivI~T--  315 (436)
                                           +     +       .. ..    ....++.||..+||...+.+.      ++++|+|  
T Consensus        96 ~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv~~~LL~~~dg~~~~~~~~~i~~s~ilfi~~ga  175 (309)
T d1ofha_          96 DSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGA  175 (309)
T ss_dssp             THHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEEC
T ss_pred             cccccccchhhhcccccccCCceEEehhhhhhhhhccCcccchhhhHHHHHhhHHhcCCEEecCCeEEEccceeEEeccc
Confidence                                 0     0       00 00    011345577777775322221      2445555  


Q ss_pred             --cCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHh
Q 013823          316 --TNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL  354 (436)
Q Consensus       316 --TN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l  354 (436)
                        +|.++.++|+++.  |||.++.|+.|+..++.+|+..+.
T Consensus       176 ~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~~~~~Il~~~~  214 (309)
T d1ofha_         176 FQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPH  214 (309)
T ss_dssp             CSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSST
T ss_pred             hhhcCcccchhhhhh--hhheeeeccCCCHHHHHHHHHHHH
Confidence              5677888888875  999999999999999999987553

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.51  E-value=1.1e-14  Score=134.22  Aligned_cols=139  Identities=16%  Similarity=0.168  Sum_probs=93.3

Q ss_pred             CccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh----
Q 013823          199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM----  274 (436)
Q Consensus       199 ~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~----  274 (436)
                      .|.  ....|.+|++|+|++++++.|...+..           +  ....+|||||||||||++|+++|++++...    
T Consensus        13 ~w~--~ky~P~~~~diig~~~~~~~l~~~i~~-----------~--~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~   77 (231)
T d1iqpa2          13 PWV--EKYRPQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHN   77 (231)
T ss_dssp             CHH--HHTCCCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHH
T ss_pred             hHH--HHhCCCCHHHccCcHHHHHHHHHHHHc-----------C--CCCeEEEECCCCCcHHHHHHHHHHHHHhcccCCC
Confidence            563  467789999999999999988776641           1  124699999999999999999999876211    


Q ss_pred             -hcccCCCC-----------------CCCCCcceeecceeecccCcc-----------cCCCCeEEEEEecCCcCCCCcc
Q 013823          275 -KDRQNDGA-----------------SVGSNTKLTLSGILNFIDGLW-----------SSCGDERIIVFTTNHKERIDPA  325 (436)
Q Consensus       275 -~~r~~~~~-----------------~~~~~~~~~~s~LL~~ldg~~-----------~~~~~~~ivI~TTN~~~~lD~A  325 (436)
                       ........                 ........  --++..+|.+.           ......+++|++||++..++++
T Consensus        78 ~~e~n~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~  155 (231)
T d1iqpa2          78 FLELNASDERGINVIREKVKEFARTKPIGGASFK--IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEP  155 (231)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCE--EEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred             eeEEecCcccchhHHHHHHHHHHhhhhccCCCce--EEeehhhhhcchhHHHHHhhhcccCCcceEEEeccCChhhchHh
Confidence             11110000                 00000000  01222222221           0112347889999999999999


Q ss_pred             ccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          326 LLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       326 llRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      +.+  |+ ..|.++.|+..+...+++..+...
T Consensus       156 l~s--R~-~~i~~~~~~~~~~~~~l~~~~~~e  184 (231)
T d1iqpa2         156 IQS--RC-AIFRFRPLRDEDIAKRLRYIAENE  184 (231)
T ss_dssp             HHH--TE-EEEECCCCCHHHHHHHHHHHHHTT
T ss_pred             HhC--cc-ccccccccchhhHHHHHHHHHHHh
Confidence            998  88 469999999999999998887654

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=3.1e-14  Score=132.34  Aligned_cols=137  Identities=16%  Similarity=0.142  Sum_probs=88.6

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc-------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR-------  277 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r-------  277 (436)
                      ...|.+|++++|.+++++.|...+.    .       + ....++|||||||||||++|+++|+++.......       
T Consensus         4 ky~P~~~~diig~~~~~~~L~~~~~----~-------~-~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~   71 (252)
T d1sxje2           4 KYRPKSLNALSHNEELTNFLKSLSD----Q-------P-RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ   71 (252)
T ss_dssp             TTCCCSGGGCCSCHHHHHHHHTTTT----C-------T-TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC-------
T ss_pred             ccCCCCHHHccCcHHHHHHHHHHHH----c-------C-CCCCeEEEECCCCCCHHHHHHHHHHhhcCcccccccccccc
Confidence            4568999999999998888765432    1       1 1123699999999999999999999873100000       


Q ss_pred             ----------------------cCCCC----------------C---------CCCCcceeecceeecccCcc-------
Q 013823          278 ----------------------QNDGA----------------S---------VGSNTKLTLSGILNFIDGLW-------  303 (436)
Q Consensus       278 ----------------------~~~~~----------------~---------~~~~~~~~~s~LL~~ldg~~-------  303 (436)
                                            .....                .         .........--+++.+|.+.       
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~~~~~~l  151 (252)
T d1sxje2          72 FVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAAL  151 (252)
T ss_dssp             -----------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHH
T ss_pred             ccccccchhhhhhccCCccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEeccccccccccchhh
Confidence                                  00000                0         00000001111333344331       


Q ss_pred             ----cCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          304 ----SSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       304 ----~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                          ......+.+|+|||+++.+++++++  |+ ..|+|+.|+.++...++...+..
T Consensus       152 ~~~~e~~~~~~~~Il~tn~~~~i~~~l~s--R~-~~i~~~~~~~~~~~~~l~~i~~~  205 (252)
T d1sxje2         152 RRTMEKYSKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTN  205 (252)
T ss_dssp             HHHHHHSTTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred             hcccccccccccceeeeccccchhhhhhc--ch-heeeecccchhhHHHHHHHHHHH
Confidence                1123457789999999999999998  98 58999999999999888877654

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=5.8e-14  Score=130.59  Aligned_cols=138  Identities=14%  Similarity=0.197  Sum_probs=92.5

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh---------
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK---------  275 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~---------  275 (436)
                      ...|.+|++++|++++++.+...+..            ...+.++|||||||||||++|+++|++++....         
T Consensus         5 KyrP~~~~dlig~~~~~~~L~~~i~~------------~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~   72 (239)
T d1njfa_           5 KWRPQTFADVVGQEHVLTALANGLSL------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC   72 (239)
T ss_dssp             HTCCSSGGGSCSCHHHHHHHHHHHHT------------TCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCS
T ss_pred             hhCCCCHHHccChHHHHHHHHHHHHc------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccc
Confidence            34688999999999999988776541            134578999999999999999999998862210         


Q ss_pred             ---------------cccCCCC-------------CCCCCcceeecceeecccCcc-----------cCCCCeEEEEEec
Q 013823          276 ---------------DRQNDGA-------------SVGSNTKLTLSGILNFIDGLW-----------SSCGDERIIVFTT  316 (436)
Q Consensus       276 ---------------~r~~~~~-------------~~~~~~~~~~s~LL~~ldg~~-----------~~~~~~~ivI~TT  316 (436)
                                     .....+.             ..........--+++.+|.+.           ...+....+|++|
T Consensus        73 ~~~~~i~~~~~~~~~~~~~~~~~~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~t  152 (239)
T d1njfa_          73 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT  152 (239)
T ss_dssp             HHHHHHHHTCCTTEEEEETTCSSSHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEE
T ss_pred             hHHHHHHcCCCCeEEEecchhcCCHHHHHHHHHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEc
Confidence                           0000000             000000000011344444431           1123457899999


Q ss_pred             CCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          317 NHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       317 N~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      |.++.+.+++.+  |+ ..|.|+.|+.++...++.+.....
T Consensus       153 n~~~~i~~~i~S--Rc-~~i~~~~~~~~~i~~~l~~i~~~e  190 (239)
T d1njfa_         153 TDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEE  190 (239)
T ss_dssp             SCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred             CCccccChhHhh--hh-cccccccCcHHHhhhHHHHHHhhh
Confidence            999999999999  88 688999999999888777776544

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=4.8e-14  Score=129.43  Aligned_cols=133  Identities=22%  Similarity=0.287  Sum_probs=91.6

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh-----hcccC
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM-----KDRQN  279 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~-----~~r~~  279 (436)
                      ...|.+|++++|++++++.|...+..           +.  ..++|||||||||||++|+++|++++..-     .....
T Consensus         7 kyrP~~~~divg~~~~~~~L~~~i~~-----------~~--~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~   73 (227)
T d1sxjc2           7 KYRPETLDEVYGQNEVITTVRKFVDE-----------GK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA   73 (227)
T ss_dssp             HTCCSSGGGCCSCHHHHHHHHHHHHT-----------TC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred             hhCCCCHHHccCcHHHHHHHHHHHHc-----------CC--CCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecc
Confidence            56789999999999999988776541           11  12599999999999999999999876110     00000


Q ss_pred             CCC------------------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCC
Q 013823          280 DGA------------------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRP  329 (436)
Q Consensus       280 ~~~------------------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRp  329 (436)
                      ...                              +.+.......+.|+..|+..    ....+++++||.+..+++++++ 
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~----~~~~~~~~~~~~~~~i~~~i~s-  148 (227)
T d1sxjc2          74 SDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERY----TKNTRFCVLANYAHKLTPALLS-  148 (227)
T ss_dssp             TSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHT-
T ss_pred             cccCCeeeeecchhhccccccccCCCeEEEEEeccccchhhHHHHHHHHhhhc----ccceeeccccCcHHHhHHHHHH-
Confidence            000                              00011111223344444332    2347899999999999999998 


Q ss_pred             CceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          330 GRMDVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       330 GR~d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                       |+ ..+.|+.|+.++...++.+.+...
T Consensus       149 -r~-~~i~~~~~~~~~i~~~l~~I~~~e  174 (227)
T d1sxjc2         149 -QC-TRFRFQPLPQEAIERRIANVLVHE  174 (227)
T ss_dssp             -TS-EEEECCCCCHHHHHHHHHHHHHTT
T ss_pred             -HH-hhhccccccccccccccccccccc
Confidence             87 678999999999988888877554

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=8e-14  Score=127.97  Aligned_cols=167  Identities=13%  Similarity=0.130  Sum_probs=108.4

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh-----cccC
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK-----DRQN  279 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~-----~r~~  279 (436)
                      ...|.+|++++|++++++.|...+..           +  ....+|||||||||||++|+++|++++....     ....
T Consensus         8 KyrP~~~~d~ig~~~~~~~L~~~~~~-----------~--~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~   74 (224)
T d1sxjb2           8 KYRPQVLSDIVGNKETIDRLQQIAKD-----------G--NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA   74 (224)
T ss_dssp             HTCCSSGGGCCSCTHHHHHHHHHHHS-----------C--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred             HhCCCCHHHhcCCHHHHHHHHHHHHc-----------C--CCCeEEEECCCCCCchhhHHHHHHHHhccccccccccccc
Confidence            57899999999999999988776541           1  1135999999999999999999999873211     1111


Q ss_pred             CCCC----------------CCCCcceeecceeecccCccc-----------CCCCeEEEEEecCCcCCCCccccCCCce
Q 013823          280 DGAS----------------VGSNTKLTLSGILNFIDGLWS-----------SCGDERIIVFTTNHKERIDPALLRPGRM  332 (436)
Q Consensus       280 ~~~~----------------~~~~~~~~~s~LL~~ldg~~~-----------~~~~~~ivI~TTN~~~~lD~AllRpGR~  332 (436)
                      .+..                .........--++..+|.+..           ......+++++||..+.+.+++++  |+
T Consensus        75 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~s--r~  152 (224)
T d1sxjb2          75 SDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQS--QC  152 (224)
T ss_dssp             TSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHT--TS
T ss_pred             cccCCceehhhHHHHHHHhhccCCCcceEEEEEecccccchhHHHHHhhhccccccceeeeeccCchhhhhhHHHH--HH
Confidence            1000                000000001112333333311           112347888999999999999999  88


Q ss_pred             eEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHHHHHHHhc-cCCHHHHHHHHHHHH
Q 013823          333 DVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEELMK-ADDADVALEGLVNFL  402 (436)
Q Consensus       333 d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpaei~~~l~~-~~~~~~al~~l~~~l  402 (436)
                       ..|.|+.|+.++...++...+..+               ...+++..+...+.. .+|+..|+..|..++
T Consensus       153 -~~i~~~~~~~~~i~~~l~~i~~~e---------------~~~i~~~~l~~I~~~s~Gd~R~ai~~Lq~~~  207 (224)
T d1sxjb2         153 -AILRYSKLSDEDVLKRLLQIIKLE---------------DVKYTNDGLEAIIFTAEGDMRQAINNLQSTV  207 (224)
T ss_dssp             -EEEECCCCCHHHHHHHHHHHHHHH---------------TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -HHhhhcccchhhhHHHHHHHHHhc---------------ccCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence             579999999999988888877543               223555555444433 458877777776544

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=99.41  E-value=7.9e-14  Score=137.56  Aligned_cols=120  Identities=19%  Similarity=0.137  Sum_probs=75.2

Q ss_pred             ChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCC-------------
Q 013823          217 DPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGAS-------------  283 (436)
Q Consensus       217 ~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~-------------  283 (436)
                      .++++..+.+.+..+        ..|.|.++++|||||||||||++|+++|++++..+...+.++..             
T Consensus       133 ~~~~~~~i~~~l~~~--------~~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs~~~l~~~~~~~~  204 (362)
T d1svma_         133 LPKMDSVVYDFLKCM--------VYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFL  204 (362)
T ss_dssp             STTHHHHHHHHHHHH--------HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSC
T ss_pred             ccchHHHHHHHHHHH--------HhCCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEECcchhhHHHHHhHHHHHH
Confidence            344566665555433        24788999999999999999999999999999554433221110             


Q ss_pred             -----C----CCCcceeecceeecccCc-------ccCCCC----------eEEEEEecCCcCCCCccccCCCceeEEEE
Q 013823          284 -----V----GSNTKLTLSGILNFIDGL-------WSSCGD----------ERIIVFTTNHKERIDPALLRPGRMDVHIN  337 (436)
Q Consensus       284 -----~----~~~~~~~~s~LL~~ldg~-------~~~~~~----------~~ivI~TTN~~~~lD~AllRpGR~d~~I~  337 (436)
                           .    ......-.-.++.++|++       ...+.+          ...+|+|||+   ++.+++||||||..|.
T Consensus       205 ~l~d~~~~~~~~~~~~~~~~~~DeiD~l~~~~dg~~~~~~~~~~~~~~~~~~~p~i~ttN~---~~~~~~r~~Rf~~~i~  281 (362)
T d1svma_         205 VVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNE---YSVPKTLQARFVKQID  281 (362)
T ss_dssp             EEETTCCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECS---CCCCHHHHTTEEEEEE
T ss_pred             HHHHHHHHhhhhccCCCCeEEEehHhhcccccCCcchhhhhhhhhchhhhccCCceeeccc---ccccccccccCceEEe
Confidence                 0    000000011123444433       211111          0137889995   6788899999999999


Q ss_pred             cCCCCHHHHH
Q 013823          338 MSYCTVHGFK  347 (436)
Q Consensus       338 ~~~p~~~~r~  347 (436)
                      +..|+...+.
T Consensus       282 ~~~~~~~~~~  291 (362)
T d1svma_         282 FRPKDYLKHC  291 (362)
T ss_dssp             CCCCHHHHHH
T ss_pred             ecCCCcHHHH
Confidence            9999877664

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=9e-13  Score=121.12  Aligned_cols=167  Identities=17%  Similarity=0.098  Sum_probs=104.2

Q ss_pred             cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh------hccc
Q 013823          205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM------KDRQ  278 (436)
Q Consensus       205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~------~~r~  278 (436)
                      ...|.+|++++|++++++.|...+.    ..         ....+|||||||||||++++++|+++.-..      ....
T Consensus         5 ky~P~~~~diig~~~~~~~l~~~i~----~~---------~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~   71 (237)
T d1sxjd2           5 KYRPKNLDEVTAQDHAVTVLKKTLK----SA---------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN   71 (237)
T ss_dssp             HTCCSSTTTCCSCCTTHHHHHHHTT----CT---------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred             hhCCCCHHHccCcHHHHHHHHHHHH----cC---------CCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhhee
Confidence            4679999999999999988766443    11         123599999999999999999999874110      0000


Q ss_pred             CCCC------------------C-CC------CCcceeecceeecccCccc-----------CCCCeEEEEEecCCcCCC
Q 013823          279 NDGA------------------S-VG------SNTKLTLSGILNFIDGLWS-----------SCGDERIIVFTTNHKERI  322 (436)
Q Consensus       279 ~~~~------------------~-~~------~~~~~~~s~LL~~ldg~~~-----------~~~~~~ivI~TTN~~~~l  322 (436)
                      ....                  . ..      .......--++.++|.+..           ......++|+++|..+.+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~  151 (237)
T d1sxjd2          72 ASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRI  151 (237)
T ss_dssp             SSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred             ccccccchHHHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCHHHHHHHhhccccccccccccccccccccc
Confidence            0000                  0 00      0000000124444444421           112346788899999999


Q ss_pred             CccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHHHHHHHhc-cCCHHHHHHHHHHH
Q 013823          323 DPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEELMK-ADDADVALEGLVNF  401 (436)
Q Consensus       323 D~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpaei~~~l~~-~~~~~~al~~l~~~  401 (436)
                      .+++.+  |+ .+|.|+.|+.++...+++..+...+               ..+++..+...... .+|...|+..|..+
T Consensus       152 ~~~l~s--r~-~~i~f~~~~~~~~~~~L~~i~~~e~---------------i~i~~~~l~~ia~~s~gd~R~ai~~L~~~  213 (237)
T d1sxjd2         152 IDPLAS--QC-SKFRFKALDASNAIDRLRFISEQEN---------------VKCDDGVLERILDISAGDLRRGITLLQSA  213 (237)
T ss_dssp             CHHHHH--HS-EEEECCCCCHHHHHHHHHHHHHTTT---------------CCCCHHHHHHHHHHTSSCHHHHHHHHHHT
T ss_pred             cccccc--hh-hhhccccccccccchhhhhhhhhhc---------------CcCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            999998  88 6899999999999888887765431               23455444333332 35777777665544


Q ss_pred             H
Q 013823          402 L  402 (436)
Q Consensus       402 l  402 (436)
                      .
T Consensus       214 ~  214 (237)
T d1sxjd2         214 S  214 (237)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.09  E-value=6.4e-11  Score=109.74  Aligned_cols=138  Identities=17%  Similarity=0.080  Sum_probs=84.5

Q ss_pred             CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh----cc--------
Q 013823          210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK----DR--------  277 (436)
Q Consensus       210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~----~r--------  277 (436)
                      ..+.++|-+...+.|.+.+...+.++      | ..++++|||||||||||++++++|+.+.-...    ..        
T Consensus        14 ~p~~l~~Re~ei~~l~~~l~~~l~~~------~-~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~   86 (276)
T d1fnna2          14 VPKRLPHREQQLQQLDILLGNWLRNP------G-HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF   86 (276)
T ss_dssp             CCSCCTTCHHHHHHHHHHHHHHHHST------T-SSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCC------C-CCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhhhhh
Confidence            34678899999999988877555433      1 35678999999999999999999998851100    00        


Q ss_pred             -----------cCCCCCCCC--------------CcceeecceeecccCc---------------ccCCCCeEEEEEecC
Q 013823          278 -----------QNDGASVGS--------------NTKLTLSGILNFIDGL---------------WSSCGDERIIVFTTN  317 (436)
Q Consensus       278 -----------~~~~~~~~~--------------~~~~~~s~LL~~ldg~---------------~~~~~~~~ivI~TTN  317 (436)
                                 .........              ........++..+|.+               .......+++|+++|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  166 (276)
T d1fnna2          87 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGH  166 (276)
T ss_dssp             HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEES
T ss_pred             hhhhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhhhhhhhhHHHHHhccccccccceEEeecCC
Confidence                       000000000              0000111112222221               111123467788888


Q ss_pred             Cc---CCCCccccCCCce-eEEEEcCCCCHHHHHHHHHHHhcc
Q 013823          318 HK---ERIDPALLRPGRM-DVHINMSYCTVHGFKVLASNYLGI  356 (436)
Q Consensus       318 ~~---~~lD~AllRpGR~-d~~I~~~~p~~~~r~~i~~~~l~~  356 (436)
                      ..   +.+++++.+  |+ ...|.|+.|+.++...|+.+.+..
T Consensus       167 ~~~~~~~~~~~~~~--r~~~~~i~~~~~~~~e~~~il~~r~~~  207 (276)
T d1fnna2         167 NDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKA  207 (276)
T ss_dssp             STHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHH
T ss_pred             chhhhhhcchhhhh--hhcchhccccchhHHHHHHHHHHHHHH
Confidence            64   567888876  54 356899999999999998887654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.09  E-value=8.3e-11  Score=109.58  Aligned_cols=54  Identities=19%  Similarity=0.092  Sum_probs=40.0

Q ss_pred             CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCc---ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWK---RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       211 ~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~---rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+.+.+-++..+.|.+.+..++.+       |..++   ..++||||||||||++++++|+.+.
T Consensus        15 P~~~~~Re~e~~~l~~~l~~~~~~-------~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          15 PPELRVRRGEAEALARIYLNRLLS-------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             CSSCSSSCHHHHHHHHHHHHHHHT-------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHc-------CCCCCCcceEEEeECCCCCCHHHHHHHHHHHHH
Confidence            467788888888888877655432       22222   2467899999999999999999875

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=2.9e-10  Score=103.02  Aligned_cols=103  Identities=17%  Similarity=0.155  Sum_probs=68.9

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhcchhh------------------------ccc--CCCC---------------
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK------------------------DRQ--NDGA---------------  282 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~------------------------~r~--~~~~---------------  282 (436)
                      ..+.++||+||||+|||++|+++|+++...-.                        ...  ....               
T Consensus        22 ~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~ir~l~~~~~  101 (207)
T d1a5ta2          22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLN  101 (207)
T ss_dssp             CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTT
T ss_pred             CcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccccccchhhhhhcccccccchhhHHhhhhh
Confidence            34678999999999999999999998741100                        000  0000               


Q ss_pred             --------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHH
Q 013823          283 --------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKV  348 (436)
Q Consensus       283 --------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~  348 (436)
                                    +.+.......+.||..|+.-    ...+++|++||+++.|.|++++  |+ ..|.|+.|+.++...
T Consensus       102 ~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep----~~~~~fIl~t~~~~~ll~tI~S--Rc-~~i~~~~~~~~~~~~  174 (207)
T d1a5ta2         102 EHARLGGAKVVWVTDAALLTDAAANALLKTLEEP----PAETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVT  174 (207)
T ss_dssp             SCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSC----CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHH
T ss_pred             hccccCccceEEechhhhhhhhhhHHHHHHHHhh----cccceeeeeecChhhhhhhhcc--ee-EEEecCCCCHHHHHH
Confidence                          00001111223344444443    3458999999999999999999  98 899999999988777


Q ss_pred             HHHHH
Q 013823          349 LASNY  353 (436)
Q Consensus       349 i~~~~  353 (436)
                      +++.-
T Consensus       175 ~L~~~  179 (207)
T d1a5ta2         175 WLSRE  179 (207)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            66543

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.01  E-value=1.3e-10  Score=112.69  Aligned_cols=49  Identities=29%  Similarity=0.408  Sum_probs=38.7

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      -.|.+|+|++.+|..|.-.+..             +...++||+||||||||++|+++|.-|
T Consensus         4 ~~f~~I~Gq~~~kral~laa~~-------------~~~h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_           4 FPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             CChhhccCcHHHHHHHHHHHhc-------------cCCCeEEEECCCCccHHHHHHHHHHhC
Confidence            3699999999999876433320             112479999999999999999999876

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=2e-09  Score=103.61  Aligned_cols=135  Identities=14%  Similarity=0.184  Sum_probs=83.5

Q ss_pred             ccccChhHHHHHHHHHHHHHhhHHHHHHhC-CCCcc-eeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC--------
Q 013823          213 TLAMDPELKQMILDDLDRFLRRKEFYRRVG-KAWKR-GYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA--------  282 (436)
Q Consensus       213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g-~~~~r-g~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~--------  282 (436)
                      .|+|+++.++.|.+.+.....      .+. ...|. .+||+||||||||.||++||..++.++...+...-        
T Consensus        23 ~viGQ~~a~~~v~~~v~~~~~------~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~~~~~~~~~   96 (315)
T d1r6bx3          23 LVFGQDKAIEALTEAIKMARA------GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSR   96 (315)
T ss_dssp             TSCSCHHHHHHHHHHHHHHHT------TCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSS
T ss_pred             eecChHHHHHHHHHHHHHHHc------cCCCCCCCceEEEEECCCcchhHHHHHHHHhhccCCeeEeccccccchhhhhh
Confidence            578999999999887753321      111 12234 58899999999999999999999854432211100        


Q ss_pred             -------C-------------------------CCCCcceeecceeecccCcc--cC-----CCCeEEEEEecCCcC---
Q 013823          283 -------S-------------------------VGSNTKLTLSGILNFIDGLW--SS-----CGDERIIVFTTNHKE---  320 (436)
Q Consensus       283 -------~-------------------------~~~~~~~~~s~LL~~ldg~~--~~-----~~~~~ivI~TTN~~~---  320 (436)
                             .                         .+.......+.||+.+|.-.  ..     .-.+.|+|+|||--.   
T Consensus        97 l~g~~~gy~g~~~~~~l~~~~~~~~~~vvl~DeieKa~~~V~~~lLqild~G~ltd~~Gr~vdf~n~iiI~Tsnig~~~i  176 (315)
T d1r6bx3          97 LIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRET  176 (315)
T ss_dssp             SCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC--
T ss_pred             hcccCCCccccccCChhhHHHHhCccchhhhcccccccchHhhhhHHhhccceecCCCCCccCccceEEEeccchhhHHH
Confidence                   0                         00001112222333332110  00     113478999999321   


Q ss_pred             ----------------------CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823          321 ----------------------RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG  355 (436)
Q Consensus       321 ----------------------~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~  355 (436)
                                            .+.|.|+-  |+|..|.|...+.++...|+..++.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~l~~~f~pEfln--Rid~ii~f~~l~~~~~~~I~~~~l~  231 (315)
T d1r6bx3         177 ERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV  231 (315)
T ss_dssp             ---------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred             HhhhccchhhhhhHhHHHHHHHhcCHHHHh--hhhhhhcccchhhhHHHHHHHHHHH
Confidence                                  24555665  9999999999999999999888774

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.71  E-value=3.8e-09  Score=97.90  Aligned_cols=51  Identities=25%  Similarity=0.432  Sum_probs=37.3

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          219 ELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       219 ~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      ++++.+.+.+..+....     .+...|+|||||||||||||++|++||++++..+
T Consensus        10 ~~~~~~~~~~~~~~~~~-----~~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~   60 (273)
T d1gvnb_          10 QFENRLNDNLEELIQGK-----KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNV   60 (273)
T ss_dssp             HHHHHHHHHHHHHHTTC-----CCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHHhcc-----cCCCCCEEEEEECCCCCCHHHHHHHHHHHhhcce
Confidence            34555555555444322     2566789999999999999999999999998444

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=1.4e-07  Score=88.23  Aligned_cols=169  Identities=18%  Similarity=0.157  Sum_probs=95.1

Q ss_pred             CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc----------hhhccc-
Q 013823          210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV----------EMKDRQ-  278 (436)
Q Consensus       210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~----------~~~~r~-  278 (436)
                      .++.++|-++..+++.+.+.             ...+.++||.||||+|||++++.+|..+..          .+...+ 
T Consensus        16 ~ld~~igRd~Ei~~l~~iL~-------------r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~   82 (268)
T d1r6bx2          16 GIDPLIGREKELERAIQVLC-------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI   82 (268)
T ss_dssp             CSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred             CCCcccChHHHHHHHHHHHh-------------cCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeee
Confidence            46778888777776655442             234578999999999999999999986541          000000 


Q ss_pred             ----CCCCCCCCCcce---------eecceeecccCc-----------------------ccCCCCeEEEEEecCC----
Q 013823          279 ----NDGASVGSNTKL---------TLSGILNFIDGL-----------------------WSSCGDERIIVFTTNH----  318 (436)
Q Consensus       279 ----~~~~~~~~~~~~---------~~s~LL~~ldg~-----------------------~~~~~~~~ivI~TTN~----  318 (436)
                          ......+....+         .....+-++|.+                       -+.  +++-+|+||..    
T Consensus        83 ~~liag~~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~r--g~i~vIgatT~eey~  160 (268)
T d1r6bx2          83 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFS  160 (268)
T ss_dssp             C---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEEEECHHHHH
T ss_pred             chHhccCccchhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhC--CCCeEEEeCCHHHHH
Confidence                000000100000         000111122221                       111  24566666652    


Q ss_pred             -cCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHHHHHHH------hc-cCC
Q 013823          319 -KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEEL------MK-ADD  390 (436)
Q Consensus       319 -~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpaei~~~l------~~-~~~  390 (436)
                       ...-|+||.|  || .+|.+..|+.++-..|+..+.....           .-....+++.-+...+      +. ..-
T Consensus       161 ~~~e~d~al~r--rF-~~I~V~Eps~e~t~~IL~~~~~~~e-----------~~h~v~~~~~al~~~v~ls~ryi~~~~~  226 (268)
T d1r6bx2         161 NIFEKDRALAR--RF-QKIDITEPSIEETVQIINGLKPKYE-----------AHHDVRYTAKAVRAAVELAVKYINDRHL  226 (268)
T ss_dssp             CCCCCTTSSGG--GE-EEEECCCCCHHHHHHHHHHHHHHHH-----------HHHTCCCCHHHHHHHHHHHHHHCTTSCT
T ss_pred             HHHhhcHHHHh--hh-cccccCCCCHHHHHHHHHHhhHHHh-----------ccCCEEeChHHHHHHHHHHHhhccCCCC
Confidence             2356899999  99 5789999999998888765432210           0012335554443333      23 346


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 013823          391 ADVALEGLVNFLKRKRI  407 (436)
Q Consensus       391 ~~~al~~l~~~l~~~~~  407 (436)
                      |+.|+.-+-+.+...+.
T Consensus       227 PdKAIdllDea~a~~~~  243 (268)
T d1r6bx2         227 PDKAIDVIDEAGARARL  243 (268)
T ss_dssp             THHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHh
Confidence            88998877666555544

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.62  E-value=3.7e-08  Score=89.26  Aligned_cols=106  Identities=19%  Similarity=0.296  Sum_probs=61.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcch-----------hhcc------c-----------CCCC----CCC--CCcceee
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVE-----------MKDR------Q-----------NDGA----SVG--SNTKLTL  292 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~-----------~~~r------~-----------~~~~----~~~--~~~~~~~  292 (436)
                      ..++||||||||||.|++|+|+++...           +...      .           ..+.    +.+  ......-
T Consensus        37 n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~iDDi~~i~~~~~~~  116 (213)
T d1l8qa2          37 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQ  116 (213)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHHH
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHHHHHHHccchhhHHHHHhhccchhhhhhhhhcCchHHH
Confidence            458999999999999999999987611           0000      0           0000    000  0011111


Q ss_pred             cceeecccCcccCCCCeEEEEEecCCcCCCC---ccccCCCce--eEEEEcCCCCHHHHHHHHHHHhccc
Q 013823          293 SGILNFIDGLWSSCGDERIIVFTTNHKERID---PALLRPGRM--DVHINMSYCTVHGFKVLASNYLGIK  357 (436)
Q Consensus       293 s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD---~AllRpGR~--d~~I~~~~p~~~~r~~i~~~~l~~~  357 (436)
                      ..|...++.+...  +..+||.+...|..++   +.|.+  |+  ...+.++ |+.+.+..+++.+....
T Consensus       117 ~~lf~lin~~~~~--~~~iiits~~~p~~l~~~~~dL~S--RL~~g~~~~i~-p~d~~~~~iL~~~a~~r  181 (213)
T d1l8qa2         117 IEFFHIFNTLYLL--EKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIE-LDNKTRFKIIKEKLKEF  181 (213)
T ss_dssp             HHHHHHHHHHHHT--TCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECC-CCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhc--cceEEEecCCcchhccccchHHHH--HhhCceEEEEC-CCcHHHHHHHHHHHHHc
Confidence            2233444444332  2356666666776664   55655  65  3567776 66788888998887654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.62  E-value=2.8e-08  Score=95.46  Aligned_cols=135  Identities=20%  Similarity=0.260  Sum_probs=82.3

Q ss_pred             ccccChhHHHHHHHHHHHHHhhHHHHHHhC-CCCcc-eeeEeCCCCCChhHHHHHHHHHh---cchhhcccCC-------
Q 013823          213 TLAMDPELKQMILDDLDRFLRRKEFYRRVG-KAWKR-GYLLYGPPGTGKSSLIAAMANYL---SVEMKDRQND-------  280 (436)
Q Consensus       213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g-~~~~r-g~LL~GPpGtGKT~la~aiA~~l---~~~~~~r~~~-------  280 (436)
                      .|+|+++.++.|.+.+......      +. ...|. .+||+||||||||.+|+++|..+   +..+......       
T Consensus        24 ~v~GQ~~ai~~v~~~i~~~~~~------l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~~~~   97 (315)
T d1qvra3          24 RVVGQDEAIRAVADAIRRARAG------LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA   97 (315)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGG------CSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGG
T ss_pred             eEeCHHHHHHHHHHHHHHHhcC------CCCCCCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccccchh
Confidence            4789999999998877643221      11 12234 47889999999999999999987   2111111000       


Q ss_pred             --------CCCCCC-------------------------CcceeecceeecccCcc-c-C-----CCCeEEEEEecCC--
Q 013823          281 --------GASVGS-------------------------NTKLTLSGILNFIDGLW-S-S-----CGDERIIVFTTNH--  318 (436)
Q Consensus       281 --------~~~~~~-------------------------~~~~~~s~LL~~ldg~~-~-~-----~~~~~ivI~TTN~--  318 (436)
                              ....+.                         ......+.|+..+|.-. . .     .-.+.++|+|||-  
T Consensus        98 ~~~L~g~~~gyvG~~~~~~l~~~~~~~p~~Vvl~DEieK~~~~v~~~ll~~l~~g~~~~~~gr~v~~~~~i~i~tsnlG~  177 (315)
T d1qvra3          98 VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGS  177 (315)
T ss_dssp             GGGC--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTH
T ss_pred             hhhhcCCCCCCcCcccCChHHHHHHhCCCcEEEEehHhhcCHHHHHHHHHHhccCceeCCCCcEecCcceEEEEecccCh
Confidence                    000000                         01111122233332211 0 0     0134799999994  


Q ss_pred             ------------------------cCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823          319 ------------------------KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG  355 (436)
Q Consensus       319 ------------------------~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~  355 (436)
                                              .+.+.|.|+.  |||..|.|...+.++..+|+...+.
T Consensus       178 ~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEfln--Rid~Ii~F~~L~~~~~~~I~~~~l~  236 (315)
T d1qvra3         178 PLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLS  236 (315)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred             HHHhhhcccccchhhhhHHHHHHHHhhcCHHHHh--cCCeeeeccchhhhhhHHHHHHHHH
Confidence                                    3457788888  9999999999999998888887764

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=98.61  E-value=7.7e-08  Score=94.05  Aligned_cols=58  Identities=22%  Similarity=0.307  Sum_probs=42.4

Q ss_pred             ccccChhHHHHHHHHHHHHHhhHH---H---------------HHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          213 TLAMDPELKQMILDDLDRFLRRKE---F---------------YRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       213 ~i~g~~~~k~~i~~~l~~~l~~~~---~---------------~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .|+|+++.|+.|...+....++..   .               .... -.++.++||.||+|||||.+|+++|..++
T Consensus        18 ~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~-~~p~~niLfiGPTGvGKTElAk~LA~~~~   93 (364)
T d1um8a_          18 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEV-ELSKSNILLIGPTGSGKTLMAQTLAKHLD   93 (364)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHT-TCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccc-cCCCcceeeeCCCCccHHHHHHHHHhhcc
Confidence            489999999999877753322111   0               1111 23567899999999999999999999887

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.42  E-value=8.6e-08  Score=85.76  Aligned_cols=92  Identities=12%  Similarity=0.167  Sum_probs=61.7

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhcc------hhhcccCCCC-----------------------------CCCCCcc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLSV------EMKDRQNDGA-----------------------------SVGSNTK  289 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~------~~~~r~~~~~-----------------------------~~~~~~~  289 (436)
                      .+..+|||||||||||++|..+|++...      ++......+.                             ..+....
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~~I~Id~IR~i~~~~~~~~~~~~~KviIId~ad~l~~   93 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ   93 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcCCCCHHHHHHHHHHHhhCcccCCCEEEEEeCccccch
Confidence            3568999999999999999999998751      1211111110                             0011122


Q ss_pred             eeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCH
Q 013823          290 LTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTV  343 (436)
Q Consensus       290 ~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~  343 (436)
                      ...+.||..|+.-    +...++|++||+++.|.|++++  |+ .+|.|+.|..
T Consensus        94 ~aqNaLLK~LEEP----p~~t~fiLit~~~~~ll~TI~S--RC-~~i~~~~p~~  140 (198)
T d2gnoa2          94 QAANAFLKALEEP----PEYAVIVLNTRRWHYLLPTIKS--RV-FRVVVNVPKE  140 (198)
T ss_dssp             HHHHHTHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCHH
T ss_pred             hhhhHHHHHHhCC----CCCceeeeccCChhhCHHHHhc--ce-EEEeCCCchH
Confidence            2334455555543    3458899999999999999999  98 7888887753

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.26  E-value=5.7e-06  Score=75.40  Aligned_cols=69  Identities=9%  Similarity=0.049  Sum_probs=42.8

Q ss_pred             CceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHHHHHHH---hccCCHHHHHHHHHHH
Q 013823          330 GRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEEL---MKADDADVALEGLVNF  401 (436)
Q Consensus       330 GR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpaei~~~l---~~~~~~~~al~~l~~~  401 (436)
                      ||....|.++..+.++...++.+.+...+...   ++++.+...++=.|.-+...+   ....+.+.+++.+++.
T Consensus       197 ~~~~~~i~L~~l~~~e~~~~l~~~~~~~~~~~---~~~~~i~~~~~G~P~~L~~~~~~~~~~~~~~~~~~~~~~~  268 (283)
T d2fnaa2         197 GRAFSTVELKPFSREEAIEFLRRGFQEADIDF---KDYEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEY  268 (283)
T ss_dssp             TCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC---CCHHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             ccceeEEeeCCCCHHHHHHHHHhhhhhcCCCH---HHHHHHHHHhCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            46678899999999998888888765432122   234445544455676555443   2345666666665553

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=4.5e-07  Score=80.51  Aligned_cols=49  Identities=22%  Similarity=0.380  Sum_probs=37.4

Q ss_pred             CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+|.++|-++..+++.+.+.             ...+.+++|.||||+|||++++.+|..+-
T Consensus        20 ~ld~~igRd~Ei~~l~~iL~-------------r~~k~n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          20 KLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             CSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCcCcHHHHHHHHHHHh-------------ccCCCCeEEEecCCcccHHHHHHHHHHHH
Confidence            45677888777776655433             23457899999999999999999998664

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.21  E-value=4.6e-07  Score=90.59  Aligned_cols=62  Identities=18%  Similarity=0.306  Sum_probs=44.2

Q ss_pred             cccChhHHHHHHHHHHHHHhhHHHHHHh-CCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823          214 LAMDPELKQMILDDLDRFLRRKEFYRRV-GKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK  275 (436)
Q Consensus       214 i~g~~~~k~~i~~~l~~~l~~~~~~~~~-g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~  275 (436)
                      |+|+++.|+.|.-.+....++-..-... .--.|+++||.||||||||.||++||+.+++++.
T Consensus        16 VvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~VPFv   78 (443)
T d1g41a_          16 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFI   78 (443)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             ccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            8999999999977775443211100000 0123679999999999999999999999995553

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.20  E-value=2.3e-06  Score=83.87  Aligned_cols=49  Identities=22%  Similarity=0.371  Sum_probs=37.7

Q ss_pred             CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+|-++|-++-.+++.+.+.             ...+.++||.||||+|||+++..+|..+-
T Consensus        20 ~ld~~~gr~~ei~~~~~~L~-------------r~~k~n~llvG~~GvGKtaiv~~la~~i~   68 (387)
T d1qvra2          20 KLDPVIGRDEEIRRVIQILL-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIV   68 (387)
T ss_dssp             CSCCCCSCHHHHHHHHHHHH-------------CSSCCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCcCcHHHHHHHHHHHh-------------cCCCCCCeEECCCCCCHHHHHHHHHHHHH
Confidence            36678888877777766554             23456799999999999999999997653

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=1.3e-06  Score=73.15  Aligned_cols=30  Identities=40%  Similarity=0.626  Sum_probs=26.4

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMK  275 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~  275 (436)
                      ++.++|.|||||||||+|++||..|+..+.
T Consensus         2 ~k~I~l~G~~GsGKSTvak~La~~L~~~~i   31 (169)
T d1kaga_           2 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY   31 (169)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence            467999999999999999999999995543

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.89  E-value=2e-06  Score=73.63  Aligned_cols=29  Identities=21%  Similarity=0.354  Sum_probs=26.1

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      .+-|++.|||||||||||++||+.++...
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~   35 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFNTTS   35 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            47799999999999999999999999543

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=4.7e-06  Score=71.13  Aligned_cols=25  Identities=44%  Similarity=0.781  Sum_probs=23.4

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |.++|+||||||||+|+++++..+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHH
Confidence            6799999999999999999999885

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.72  E-value=6.5e-06  Score=69.80  Aligned_cols=27  Identities=33%  Similarity=0.509  Sum_probs=24.1

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVEMK  275 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~~~  275 (436)
                      ++|.|||||||||+|++||..+|..+.
T Consensus         7 I~i~G~pGsGKTTia~~La~~l~~~~i   33 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKSGLKYI   33 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCcEE
Confidence            779999999999999999999995543

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.72  E-value=6.6e-06  Score=69.54  Aligned_cols=26  Identities=38%  Similarity=0.666  Sum_probs=23.7

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++-++|.|||||||||+|+.||..++
T Consensus         2 ~klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           2 KKLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            35689999999999999999999987

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.66  E-value=1.2e-05  Score=68.42  Aligned_cols=28  Identities=36%  Similarity=0.507  Sum_probs=24.5

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |.+-.++|.||||+||||+++.||..++
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            3344599999999999999999999987

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.65  E-value=1e-05  Score=68.73  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=22.2

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      |+|.|+||+||||+|++||..|+.
T Consensus         9 I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           9 IFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhh
Confidence            778999999999999999999973

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.64  E-value=1.1e-05  Score=68.33  Aligned_cols=27  Identities=26%  Similarity=0.439  Sum_probs=24.5

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      ++-|+|.||||+||||+|++||..++.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~   29 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPE   29 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            367899999999999999999999983

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.63  E-value=1.1e-05  Score=68.88  Aligned_cols=30  Identities=33%  Similarity=0.493  Sum_probs=26.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcchhhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVEMKD  276 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~  276 (436)
                      +.++|.||||+||||+++++|..+|.++.+
T Consensus         1 k~I~liG~~GsGKsTi~k~La~~l~~~~~d   30 (161)
T d1viaa_           1 KNIVFIGFMGSGKSTLARALAKDLDLVFLD   30 (161)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence            358889999999999999999999966554

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=1.4e-05  Score=67.69  Aligned_cols=29  Identities=31%  Similarity=0.548  Sum_probs=24.9

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSVEM  274 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~  274 (436)
                      ++-++|.|||||||||++++||+.++...
T Consensus         6 ~~iivl~G~~GsGKsT~a~~La~~l~~~~   34 (171)
T d1knqa_           6 HHIYVLMGVSGSGKSAVASEVAHQLHAAF   34 (171)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            35578999999999999999999998433

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.59  E-value=1.4e-05  Score=68.62  Aligned_cols=30  Identities=23%  Similarity=0.375  Sum_probs=26.4

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcchhhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVEMKD  276 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~  276 (436)
                      +.++|.|||||||||+++.+|+.+|.++.+
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id   32 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGYEFVD   32 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence            568899999999999999999999966553

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.50  E-value=1.4e-05  Score=67.85  Aligned_cols=29  Identities=41%  Similarity=0.551  Sum_probs=25.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVEMK  275 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~  275 (436)
                      +-++|.|||||||||+|+++|+.+|....
T Consensus         5 ~iI~l~G~~GsGKSTia~~La~~lg~~~~   33 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIAEALANLPGVPKV   33 (176)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTCSSSCEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            45889999999999999999999985543

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.48  E-value=2.3e-05  Score=66.85  Aligned_cols=28  Identities=39%  Similarity=0.587  Sum_probs=24.2

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcchhhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVEMKD  276 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~~~~  276 (436)
                      ++|.|||||||||+++.+|..+|.++.+
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~~fiD   31 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGVGLLD   31 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence            5566999999999999999999976654

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.45  E-value=2.6e-05  Score=66.56  Aligned_cols=25  Identities=28%  Similarity=0.630  Sum_probs=22.9

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcch
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      ++|.||||||||||+++|++.+...
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCC
Confidence            7899999999999999999998743

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.45  E-value=2.6e-05  Score=68.03  Aligned_cols=29  Identities=21%  Similarity=0.328  Sum_probs=25.7

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      ..|.-++|.||||+||||+|+.||..+|.
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g~   32 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDFGW   32 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence            34567899999999999999999999994

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.39  E-value=3.4e-05  Score=67.09  Aligned_cols=27  Identities=15%  Similarity=0.324  Sum_probs=24.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      --++|.|||||||||+|+.||..+|..
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~~~~~   30 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTKYQLA   30 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence            358899999999999999999999943

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.37  E-value=4.1e-05  Score=63.58  Aligned_cols=25  Identities=32%  Similarity=0.384  Sum_probs=21.1

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHh
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      ++-++|+||||+||||+|+.++...
T Consensus         2 kklIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           2 KKIILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            3457899999999999999987654

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.37  E-value=3.7e-05  Score=65.97  Aligned_cols=25  Identities=24%  Similarity=0.490  Sum_probs=23.1

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcch
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      ++|.||||+||||+|+.||..+|..
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~~~~   27 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAYGIP   27 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCc
Confidence            7899999999999999999999943

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=1.9e-05  Score=68.37  Aligned_cols=24  Identities=33%  Similarity=0.558  Sum_probs=22.1

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -++|+|+||+||||+|++||..++
T Consensus        21 vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          21 TVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             EEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            466899999999999999999987

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.34  E-value=5.2e-05  Score=65.89  Aligned_cols=25  Identities=36%  Similarity=0.679  Sum_probs=22.6

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      -++|.|||||||||+|+.||..+|+
T Consensus         5 riil~G~pGSGKsT~a~~La~~~g~   29 (190)
T d1ak2a1           5 RAVLLGPPGAGKGTQAPKLAKNFCV   29 (190)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3678899999999999999999993

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.32  E-value=0.0019  Score=59.46  Aligned_cols=47  Identities=17%  Similarity=0.136  Sum_probs=33.8

Q ss_pred             cccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          214 LAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       214 i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      +.|-+.-.+.|.+.+...          +-...+-+.|||++|.|||+||+.+++..
T Consensus        22 ~~gR~~~~~~i~~~L~~~----------~~~~~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          22 CYIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             SCCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             eeCcHHHHHHHHHHHHhc----------cCCCceEEEEECCCCCCHHHHHHHHHHhh
Confidence            557777777777766421          11223457799999999999999998763

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.29  E-value=5.3e-05  Score=65.28  Aligned_cols=24  Identities=42%  Similarity=0.783  Sum_probs=22.5

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      ++|.|||||||||+|+.||+.+|.
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~g~   26 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKLGI   26 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCC
Confidence            688999999999999999999994

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=97.24  E-value=9e-05  Score=68.62  Aligned_cols=29  Identities=28%  Similarity=0.486  Sum_probs=26.3

Q ss_pred             CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          243 KAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       243 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+....+.|+|||+||||+++.+|+..+|
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            46667899999999999999999999998

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=7e-05  Score=64.59  Aligned_cols=24  Identities=29%  Similarity=0.650  Sum_probs=22.3

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      ++|.||||+||||+|+.||..+|.
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~g~   28 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERFHA   28 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            678899999999999999999993

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=7.7e-05  Score=65.06  Aligned_cols=26  Identities=23%  Similarity=0.401  Sum_probs=23.5

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      .-++|.||||+||||+|+.||+.+|.
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~~~g~   34 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVKDYSF   34 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            35788999999999999999999994

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.22  E-value=6.7e-05  Score=65.48  Aligned_cols=27  Identities=19%  Similarity=0.373  Sum_probs=24.5

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      ++-++|.||||+||||+|+.||..+|.
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~~~g~   34 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQKYGY   34 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHTCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            456889999999999999999999994

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.22  E-value=7e-05  Score=64.59  Aligned_cols=24  Identities=25%  Similarity=0.476  Sum_probs=22.6

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      ++|.||||+||||+|+.||..+|.
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~g~   26 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKYGT   26 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCC
Confidence            678999999999999999999994

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=97.19  E-value=0.00015  Score=63.94  Aligned_cols=30  Identities=27%  Similarity=0.488  Sum_probs=28.0

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |.|.++.++|||||+||||+++.+|++.++
T Consensus        49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            678888999999999999999999999987

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.18  E-value=8e-05  Score=64.16  Aligned_cols=29  Identities=24%  Similarity=0.232  Sum_probs=24.7

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      +.|.-++|.|+|||||||+|+.++..++.
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~~~   40 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSAGY   40 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGGTC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            45667899999999999999999887763

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.17  E-value=8.5e-05  Score=64.92  Aligned_cols=24  Identities=21%  Similarity=0.552  Sum_probs=22.4

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      ++|.||||+||||+|+.||..+|.
T Consensus         9 IiliG~PGSGKtT~a~~La~~~g~   32 (189)
T d2ak3a1           9 AAIMGAPGSGKGTVSSRITKHFEL   32 (189)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHBCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCC
Confidence            778899999999999999999993

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.14  E-value=9.3e-05  Score=62.89  Aligned_cols=25  Identities=20%  Similarity=0.356  Sum_probs=22.9

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +-+++.|||||||||+++.|+..++
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4588999999999999999999886

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=9.9e-05  Score=64.09  Aligned_cols=26  Identities=23%  Similarity=0.394  Sum_probs=23.5

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      -++|.||||+||||.|+.||+.+|..
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~g~~   28 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKYGYT   28 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            47899999999999999999999943

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00011  Score=64.76  Aligned_cols=26  Identities=38%  Similarity=0.520  Sum_probs=23.3

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      -|.+.|||||||+|+|+.||+.+|+.
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~   30 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWH   30 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            46788999999999999999999943

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.07  E-value=0.00011  Score=64.03  Aligned_cols=26  Identities=23%  Similarity=0.460  Sum_probs=23.2

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |--++|.|+||+||||+|++||.+++
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34478999999999999999999887

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.0001  Score=63.24  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=22.4

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      ++|.||||+||||.|+.||+.++.
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~~~   26 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKYGI   26 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            678999999999999999999994

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00014  Score=60.99  Aligned_cols=24  Identities=25%  Similarity=0.293  Sum_probs=21.6

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -+.+.|+||||||||++.|++++.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            367999999999999999998875

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00019  Score=61.93  Aligned_cols=30  Identities=20%  Similarity=0.169  Sum_probs=25.7

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |+++.+-++++||||+|||+++..+|....
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCcCCEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            567777899999999999999999987553

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.90  E-value=0.0002  Score=63.23  Aligned_cols=25  Identities=24%  Similarity=0.442  Sum_probs=22.1

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcch
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      +.+-||||+||||.|+.||.++|..
T Consensus         6 IaIdGp~GsGKgT~ak~La~~lg~~   30 (223)
T d1q3ta_           6 IAIDGPASSGKSTVAKIIAKDFGFT   30 (223)
T ss_dssp             EEEECSSCSSHHHHHHHHHHHHCCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCc
Confidence            4567999999999999999999944

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.82  E-value=0.00016  Score=64.32  Aligned_cols=28  Identities=32%  Similarity=0.238  Sum_probs=24.1

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      |++..+-++|+||||||||+++..+|..
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            5777788999999999999999887653

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00035  Score=62.43  Aligned_cols=29  Identities=21%  Similarity=0.108  Sum_probs=25.4

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++..+-++++||||||||+++..+|...
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            67777789999999999999999998753

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.75  E-value=0.00058  Score=62.14  Aligned_cols=47  Identities=15%  Similarity=0.262  Sum_probs=33.6

Q ss_pred             cccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          214 LAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       214 i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+|.....+.+.+.+....           .....+||+||||||||.+|++|.....
T Consensus         2 ~v~~S~~~~~~~~~~~~~a-----------~~~~pvlI~Ge~GtGK~~~A~~ih~~s~   48 (247)
T d1ny5a2           2 YVFESPKMKEILEKIKKIS-----------CAECPVLITGESGVGKEVVARLIHKLSD   48 (247)
T ss_dssp             CCCCSHHHHHHHHHHHHHT-----------TCCSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred             eEecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence            3566666666666555332           1235699999999999999999987654

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.73  E-value=0.00026  Score=60.26  Aligned_cols=24  Identities=33%  Similarity=0.534  Sum_probs=22.0

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -+++.|+||+||||+++.||..++
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            367899999999999999999987

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.70  E-value=0.00029  Score=63.02  Aligned_cols=29  Identities=28%  Similarity=0.305  Sum_probs=25.4

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++.+.-++++||||||||+++..+|...
T Consensus        22 Gi~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          22 GFFKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            46777779999999999999999998874

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.68  E-value=0.00029  Score=63.08  Aligned_cols=29  Identities=24%  Similarity=0.336  Sum_probs=24.8

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++..+-++++||||||||+++..+|...
T Consensus        32 Glp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          32 GIETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            46777779999999999999999888754

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.61  E-value=0.00074  Score=57.77  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=21.2

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |-+.||+|+||||+|+.|+..++
T Consensus        25 IgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          25 LGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Confidence            55899999999999999999887

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.46  E-value=0.0007  Score=58.82  Aligned_cols=25  Identities=40%  Similarity=0.614  Sum_probs=22.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |.+.|.||+|+|||++++.++..++
T Consensus         1 rpIvl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           1 RPVVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCC
Confidence            3488999999999999999999876

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.43  E-value=0.00074  Score=58.37  Aligned_cols=25  Identities=36%  Similarity=0.616  Sum_probs=22.8

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |.++|.||+|+|||+|++.+++...
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCC
Confidence            5689999999999999999999875

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.22  E-value=0.0015  Score=57.67  Aligned_cols=26  Identities=27%  Similarity=0.323  Sum_probs=22.5

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.-++|+|+||+||||+|++++..+.
T Consensus        24 g~vIwltGlsGsGKTTia~~L~~~l~   49 (208)
T d1m7ga_          24 GLTIWLTGLSASGKSTLAVELEHQLV   49 (208)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34588999999999999999998763

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.17  E-value=0.00092  Score=58.71  Aligned_cols=27  Identities=30%  Similarity=0.404  Sum_probs=22.9

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHH
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      |++++.-++|+||||+|||+++..+|.
T Consensus        22 Gi~~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          22 GLPIGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            567777799999999999999977654

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.12  E-value=0.0015  Score=57.72  Aligned_cols=27  Identities=33%  Similarity=0.495  Sum_probs=23.0

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .++-++|.||+|+||||.+.-||..+.
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~   31 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ   31 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            356689999999999999999998764

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.07  E-value=0.001  Score=58.63  Aligned_cols=29  Identities=21%  Similarity=0.217  Sum_probs=24.9

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++...-++|+||||+|||+++..+|..+
T Consensus        30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          30 GLESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            46666679999999999999999998765

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.91  E-value=0.002  Score=55.10  Aligned_cols=25  Identities=28%  Similarity=0.562  Sum_probs=22.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +-++|.||+|+||||+++.++....
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4578999999999999999998764

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.90  E-value=0.002  Score=54.02  Aligned_cols=24  Identities=17%  Similarity=0.227  Sum_probs=21.5

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -+-+.|+||+|||||+..++.+|.
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            356899999999999999999886

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.002  Score=56.42  Aligned_cols=24  Identities=29%  Similarity=0.349  Sum_probs=21.8

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      +-+.||+|+||||+++.|+..++.
T Consensus         5 IgI~G~~gSGKSTla~~L~~~l~~   28 (213)
T d1uj2a_           5 IGVSGGTASGKSSVCAKIVQLLGQ   28 (213)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTTG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhch
Confidence            568999999999999999999873

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.0034  Score=60.07  Aligned_cols=23  Identities=35%  Similarity=0.557  Sum_probs=18.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      +-.+|.||||||||+++..+...
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~l~~  186 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKLLAA  186 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHHHHHH
Confidence            45889999999999988655443

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.72  E-value=0.0025  Score=52.29  Aligned_cols=21  Identities=19%  Similarity=0.333  Sum_probs=18.8

Q ss_pred             eeEeCCCCCChhHHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~  269 (436)
                      ++|.|+||+|||+|++.+++.
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            689999999999999998753

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=95.65  E-value=0.0031  Score=55.92  Aligned_cols=27  Identities=22%  Similarity=0.251  Sum_probs=22.7

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .|.-++|.||+|+||||.+.-||..+.
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~~~   36 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKMFV   36 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            345688999999999999999997763

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.65  E-value=0.0027  Score=56.18  Aligned_cols=26  Identities=27%  Similarity=0.416  Sum_probs=18.3

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |.-++|.||+|+||||.+.-||..+.
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA~~~~   37 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLAYFYK   37 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45588999999999999999997764

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.63  E-value=0.0064  Score=58.94  Aligned_cols=48  Identities=25%  Similarity=0.344  Sum_probs=38.6

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcce-eeEeCCCCCChhHHHHHHHHHhc
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg-~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .++++++..++..+.+.+.+.               .++| +|+.||.|+||||+..++-++++
T Consensus       135 ~~l~~LG~~~~~~~~l~~l~~---------------~~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         135 LDLHSLGMTAHNHDNFRRLIK---------------RPHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             CCGGGSCCCHHHHHHHHHHHT---------------SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhhhhhcccHHHHHHHHHHHh---------------hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            468899999888887765432               3455 77899999999999999999886

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.61  E-value=0.0034  Score=55.34  Aligned_cols=25  Identities=32%  Similarity=0.533  Sum_probs=21.5

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +-++|.||+|+||||.+.-||..+.
T Consensus        11 ~vi~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2          11 NLWFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3478899999999999999998775

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.50  E-value=0.0037  Score=55.27  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=22.5

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |.-++|.||+|+||||.+.-+|..+.
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~   34 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFE   34 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45688999999999999999997764

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.0034  Score=57.42  Aligned_cols=30  Identities=27%  Similarity=0.416  Sum_probs=24.7

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |++..+-.+|+||||||||+++-.+|....
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q   79 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ   79 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence            556666789999999999999988887653

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.32  E-value=0.004  Score=50.84  Aligned_cols=20  Identities=30%  Similarity=0.582  Sum_probs=18.7

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|+||+|||+|+..+.+
T Consensus         3 I~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999876

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.29  E-value=0.014  Score=49.03  Aligned_cols=27  Identities=26%  Similarity=0.313  Sum_probs=24.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      .-++|.|+=|+|||++++++++.+|+.
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             eEEEEecCCCccHHHHHHHHHhhcccc
Confidence            348899999999999999999999954

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.0036  Score=55.04  Aligned_cols=25  Identities=36%  Similarity=0.440  Sum_probs=21.2

Q ss_pred             ceee--EeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYL--LYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~L--L~GPpGtGKT~la~aiA~~l~  271 (436)
                      ||.|  |.||.|+||||+++.|++.|.
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5644  559999999999999999875

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.22  E-value=0.0055  Score=57.67  Aligned_cols=26  Identities=19%  Similarity=0.599  Sum_probs=23.4

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++++|+.||+|+|||++.+|++++..
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCCEEEEeeccccchHHHHHHhhhcc
Confidence            46899999999999999999988775

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.21  E-value=0.0046  Score=53.61  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=20.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      |.|+|.|+||+|||+|.+++.+
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHc
Confidence            5799999999999999999876

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.15  E-value=0.0047  Score=50.79  Aligned_cols=20  Identities=25%  Similarity=0.549  Sum_probs=18.6

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|+||+|||||++++.+
T Consensus         8 I~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999875

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.13  E-value=0.0052  Score=52.67  Aligned_cols=24  Identities=29%  Similarity=0.428  Sum_probs=21.6

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHH
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .+|+||.||+|+|||++|.++...
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            478999999999999999988765

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.0061  Score=52.10  Aligned_cols=26  Identities=15%  Similarity=0.402  Sum_probs=22.6

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++.++|.||+|+|||+|++.+.....
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhCC
Confidence            46789999999999999999987653

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.09  E-value=0.0052  Score=54.17  Aligned_cols=23  Identities=30%  Similarity=0.693  Sum_probs=20.6

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +++.||||+|||||+.++...+.
T Consensus         3 i~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Confidence            67899999999999999987664

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.06  E-value=0.0058  Score=51.07  Aligned_cols=20  Identities=20%  Similarity=0.519  Sum_probs=18.2

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|+||+|||||..++..
T Consensus        16 I~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          16 LVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             EEEEEETTSSHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999998754

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.03  E-value=0.0043  Score=56.12  Aligned_cols=26  Identities=31%  Similarity=0.277  Sum_probs=21.6

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      +..-.+|+||||+|||+|+..+|..+
T Consensus        28 pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          28 AGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34557899999999999999988654

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.95  E-value=0.0036  Score=54.86  Aligned_cols=25  Identities=32%  Similarity=0.638  Sum_probs=21.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||.|+|||||.++|++.+.
T Consensus        28 ei~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          28 NVVNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCChHHHHHHHHhcccc
Confidence            3477999999999999999988664

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.80  E-value=0.0073  Score=55.10  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=16.5

Q ss_pred             ceeeEeCCCCCChhHHH-HHHHH
Q 013823          247 RGYLLYGPPGTGKSSLI-AAMAN  268 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la-~aiA~  268 (436)
                      ..+|+.||||||||+++ ..++.
T Consensus        15 ~~~lI~g~aGTGKTt~l~~rv~~   37 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVITNKIAH   37 (306)
T ss_dssp             SEEEECCCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEeeCCccHHHHHHHHHHH
Confidence            45899999999999754 44444

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=94.79  E-value=0.0051  Score=51.15  Aligned_cols=20  Identities=20%  Similarity=0.512  Sum_probs=18.3

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      +++.|+||+|||+|++.+.+
T Consensus         5 i~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHcC
Confidence            88999999999999998854

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.74  E-value=0.019  Score=52.89  Aligned_cols=22  Identities=36%  Similarity=0.523  Sum_probs=19.1

Q ss_pred             eeEeCCCCCChhHHHHHHHHHh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      +-|.||+||||||++..|...+
T Consensus        30 IGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          30 IFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHH
Confidence            4478999999999999988765

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.0073  Score=50.77  Aligned_cols=20  Identities=35%  Similarity=0.786  Sum_probs=18.2

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      +++.|+||||||+|++.+.+
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78899999999999998765

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.62  E-value=0.0077  Score=51.79  Aligned_cols=22  Identities=27%  Similarity=0.604  Sum_probs=20.0

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .++|.|+||+|||||..++.+.
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999863

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.58  E-value=0.0063  Score=52.19  Aligned_cols=24  Identities=38%  Similarity=0.455  Sum_probs=21.2

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHH
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .+|+||.||+|+|||++|.++...
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            478999999999999999888754

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.54  E-value=0.0071  Score=50.61  Aligned_cols=22  Identities=32%  Similarity=0.555  Sum_probs=19.0

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .+.|.|+||+|||||++++.+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999754

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=94.51  E-value=0.016  Score=54.03  Aligned_cols=24  Identities=25%  Similarity=0.257  Sum_probs=21.4

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -+-+.||+|+||||+|+.|+..+.
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHh
Confidence            466899999999999999999874

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.49  E-value=0.0092  Score=52.23  Aligned_cols=25  Identities=40%  Similarity=0.604  Sum_probs=21.5

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +-++|.||+|+|||+|++.+.....
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3478999999999999999998754

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.47  E-value=0.0087  Score=55.15  Aligned_cols=24  Identities=21%  Similarity=0.397  Sum_probs=17.6

Q ss_pred             ceeeEeCCCCCChhHH-HHHHHHHh
Q 013823          247 RGYLLYGPPGTGKSSL-IAAMANYL  270 (436)
Q Consensus       247 rg~LL~GPpGtGKT~l-a~aiA~~l  270 (436)
                      ..+|+.||||||||+. +..+|..+
T Consensus        25 g~~lV~g~aGSGKTt~l~~ri~~ll   49 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVLTHRIAYLM   49 (318)
T ss_dssp             SCEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCccHHHHHHHHHHHHH
Confidence            4589999999999974 44455443

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=94.46  E-value=0.0067  Score=50.68  Aligned_cols=21  Identities=14%  Similarity=0.373  Sum_probs=19.2

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      -++|.|.||+|||+|+.++.+
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999999875

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.42  E-value=0.0075  Score=54.25  Aligned_cols=23  Identities=35%  Similarity=0.694  Sum_probs=20.3

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +.|.||.|||||||.++|++.+.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~~   49 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCChHHHHHHHHHcCCC
Confidence            34789999999999999999775

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.40  E-value=0.0062  Score=51.34  Aligned_cols=21  Identities=29%  Similarity=0.474  Sum_probs=19.2

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      .|+|.|+||+|||||+++|.+
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999975

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.38  E-value=0.0089  Score=53.48  Aligned_cols=25  Identities=32%  Similarity=0.541  Sum_probs=21.9

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||.|||||||.++|++.+.
T Consensus        27 ei~~liGpsGsGKSTLl~~i~Gl~~   51 (232)
T d2awna2          27 EFVVFVGPSGCGKSTLLRMIAGLET   51 (232)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCC
Confidence            3477999999999999999998765

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.35  E-value=0.0075  Score=53.93  Aligned_cols=25  Identities=24%  Similarity=0.436  Sum_probs=21.4

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      --+-|.||+|||||||.++|++...
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~gl~~   56 (230)
T d1l2ta_          32 EFVSIMGPSGSGKSTMLNIIGCLDK   56 (230)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCcchhhHhccCCCC
Confidence            4478999999999999999988653

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.34  E-value=0.0087  Score=50.89  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=21.3

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHH
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .+|+||.||+|.|||+++.++...
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            479999999999999999887765

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.33  E-value=0.012  Score=53.84  Aligned_cols=29  Identities=24%  Similarity=0.398  Sum_probs=24.2

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++..+-..|+||||||||++|..+|...
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~   84 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANA   84 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHH
Confidence            67777779999999999999997776543

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=94.32  E-value=0.01  Score=49.31  Aligned_cols=20  Identities=25%  Similarity=0.446  Sum_probs=18.3

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|+||+|||+|+..+.+
T Consensus         5 i~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            78899999999999999865

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.29  E-value=0.0091  Score=53.66  Aligned_cols=25  Identities=28%  Similarity=0.499  Sum_probs=21.9

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+-|.||.|||||||.++|++.+.
T Consensus        33 e~~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          33 EFLVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCC
Confidence            3477999999999999999998765

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.24  E-value=0.011  Score=49.13  Aligned_cols=20  Identities=30%  Similarity=0.471  Sum_probs=18.3

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|+||+|||+|+..+.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998775

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.17  E-value=0.011  Score=49.10  Aligned_cols=20  Identities=35%  Similarity=0.730  Sum_probs=18.3

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|+||+|||+|++.+.+
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999999875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.16  E-value=0.012  Score=49.01  Aligned_cols=20  Identities=30%  Similarity=0.552  Sum_probs=18.5

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|+||+|||+|++.+.+
T Consensus         6 i~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999875

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.12  E-value=0.0078  Score=54.61  Aligned_cols=28  Identities=21%  Similarity=0.434  Sum_probs=23.3

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +...-+.|.||+|||||||+++|++.+.
T Consensus        39 ~~Ge~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          39 PAGKTVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcccC
Confidence            3445588999999999999999987664

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.09  E-value=0.0085  Score=55.20  Aligned_cols=26  Identities=27%  Similarity=0.415  Sum_probs=22.6

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..-+.|.||.|+|||||+++|++.+.
T Consensus        62 Ge~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          62 GEMLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCCc
Confidence            34488999999999999999998775

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.08  E-value=0.012  Score=49.12  Aligned_cols=20  Identities=30%  Similarity=0.529  Sum_probs=18.5

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      +++.|+||+|||+|++.+.+
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999999875

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.07  E-value=0.0099  Score=54.35  Aligned_cols=29  Identities=31%  Similarity=0.436  Sum_probs=24.2

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |++..+-..+|||||||||++|..+|...
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~a   81 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQA   81 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHHH
Confidence            45666668899999999999999888754

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.03  E-value=0.0078  Score=51.50  Aligned_cols=24  Identities=25%  Similarity=0.509  Sum_probs=21.7

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -|.+-|+.|+||||+++.|++.++
T Consensus        11 ~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1          11 TVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             EEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            467889999999999999999886

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=94.02  E-value=0.011  Score=53.18  Aligned_cols=25  Identities=28%  Similarity=0.510  Sum_probs=21.4

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+-|.||.|||||||+++|++.+.
T Consensus        30 e~~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          30 EFMILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCC
Confidence            3477999999999999999998654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.013  Score=48.96  Aligned_cols=20  Identities=30%  Similarity=0.665  Sum_probs=18.5

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|++|+|||+|++.+.+
T Consensus         5 i~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999998876

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.01  E-value=0.015  Score=52.54  Aligned_cols=29  Identities=21%  Similarity=0.216  Sum_probs=23.5

Q ss_pred             CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823          242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      |+.+..-++|.|+||+|||+++..+|..+
T Consensus        31 G~~~G~l~vi~G~~G~GKT~~~~~la~~~   59 (277)
T d1cr2a_          31 GARGGEVIMVTSGSGMGKSTFVRQQALQW   59 (277)
T ss_dssp             SBCTTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHhh
Confidence            55555668999999999999998888543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=94.00  E-value=0.0088  Score=53.86  Aligned_cols=28  Identities=21%  Similarity=0.412  Sum_probs=23.2

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++..-+.+.||.|+|||||+++|++.+.
T Consensus        26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~   53 (242)
T d1mv5a_          26 QPNSIIAFAGPSGGGKSTIFSLLERFYQ   53 (242)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence            3344588999999999999999988764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.98  E-value=0.011  Score=50.21  Aligned_cols=20  Identities=25%  Similarity=0.552  Sum_probs=18.1

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|+||+|||+|++.+.+
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999998864

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.97  E-value=0.011  Score=49.48  Aligned_cols=20  Identities=30%  Similarity=0.620  Sum_probs=18.6

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|+||+|||+|++.+++
T Consensus         8 i~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999875

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.91  E-value=0.012  Score=51.07  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=20.8

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |.+-|++|+||||+++.+++.+.
T Consensus         5 IviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            66789999999999999999875

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.91  E-value=0.013  Score=49.16  Aligned_cols=20  Identities=35%  Similarity=0.660  Sum_probs=18.3

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      +++.|+||+|||+|++.+.+
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998865

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.81  E-value=0.015  Score=48.61  Aligned_cols=20  Identities=35%  Similarity=0.662  Sum_probs=18.3

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|+||+|||+|+..+.+
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998765

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.79  E-value=0.011  Score=53.62  Aligned_cols=28  Identities=32%  Similarity=0.405  Sum_probs=23.2

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ++..-+.|.||.|||||||+++|++.+.
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcccC
Confidence            3344588999999999999999988664

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=93.76  E-value=0.0093  Score=53.68  Aligned_cols=27  Identities=22%  Similarity=0.314  Sum_probs=22.9

Q ss_pred             CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          245 WKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       245 ~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+.-+.+.||+|+|||||+++|++.+.
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            344588999999999999999988764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=93.72  E-value=0.012  Score=48.44  Aligned_cols=20  Identities=45%  Similarity=0.738  Sum_probs=18.5

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|+||+|||||++++.+
T Consensus         4 I~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999975

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=93.70  E-value=0.01  Score=53.34  Aligned_cols=25  Identities=32%  Similarity=0.437  Sum_probs=21.4

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+-|.||+|||||||+++|++...
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~Gl~~   56 (240)
T d3dhwc1          32 QIYGVIGASGAGKSTLIRCVNLLER   56 (240)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCcc
Confidence            3477999999999999999988654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=93.69  E-value=0.011  Score=50.58  Aligned_cols=20  Identities=40%  Similarity=0.554  Sum_probs=18.9

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      +.|.|+||+|||||+++|.+
T Consensus        26 I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          26 IALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             EEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHhcC
Confidence            88999999999999999975

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.69  E-value=0.016  Score=49.76  Aligned_cols=23  Identities=22%  Similarity=0.453  Sum_probs=20.5

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |.+.|+.|+||||+++.|++.+.
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            45789999999999999999874

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=93.67  E-value=0.009  Score=53.34  Aligned_cols=24  Identities=25%  Similarity=0.660  Sum_probs=21.4

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -+.|.||.|||||||.++|++.+.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Confidence            478999999999999999998664

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.013  Score=48.62  Aligned_cols=20  Identities=30%  Similarity=0.544  Sum_probs=18.5

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|+||+|||+|+..+.+
T Consensus         6 i~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999999876

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.016  Score=48.28  Aligned_cols=20  Identities=35%  Similarity=0.581  Sum_probs=18.5

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      +++.|.||+|||+|+..+.+
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.64  E-value=0.016  Score=48.93  Aligned_cols=20  Identities=35%  Similarity=0.677  Sum_probs=18.4

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|.||||||+|+..+.+
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=93.64  E-value=0.047  Score=51.07  Aligned_cols=23  Identities=35%  Similarity=0.577  Sum_probs=20.5

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +-+.||||+|||||+.+++..+.
T Consensus        57 IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          57 LGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHH
Confidence            66899999999999999997654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.017  Score=48.01  Aligned_cols=20  Identities=30%  Similarity=0.454  Sum_probs=18.3

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|.||+|||+|++.+.+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.59  E-value=0.014  Score=48.70  Aligned_cols=20  Identities=30%  Similarity=0.493  Sum_probs=18.6

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|.||+|||+|++.+.+
T Consensus         8 i~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            89999999999999998875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.57  E-value=0.016  Score=48.34  Aligned_cols=20  Identities=35%  Similarity=0.642  Sum_probs=18.0

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      +++.|.||+|||+|++.+.+
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999998765

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.52  E-value=0.015  Score=48.30  Aligned_cols=21  Identities=38%  Similarity=0.599  Sum_probs=18.8

Q ss_pred             eeEeCCCCCChhHHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~  269 (436)
                      +++.|+||+|||+|++.+.+.
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999998763

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.48  E-value=0.05  Score=50.79  Aligned_cols=22  Identities=41%  Similarity=0.620  Sum_probs=19.9

Q ss_pred             eeEeCCCCCChhHHHHHHHHHh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      +=+.||||+|||||+.+++..+
T Consensus        54 igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          54 VGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EeeeCCCCCCHHHHHHHHHHHH
Confidence            5689999999999999999865

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.48  E-value=0.018  Score=48.41  Aligned_cols=20  Identities=40%  Similarity=0.702  Sum_probs=18.6

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      +++.|+||+|||+|++.+.+
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999999875

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.48  E-value=0.019  Score=47.48  Aligned_cols=20  Identities=20%  Similarity=0.396  Sum_probs=18.3

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|++|+|||+|++.+.+
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998865

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=93.43  E-value=0.014  Score=48.81  Aligned_cols=21  Identities=33%  Similarity=0.572  Sum_probs=18.5

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      -+++.|+||+|||+|++.+.+
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999998743

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=93.40  E-value=0.017  Score=49.19  Aligned_cols=23  Identities=26%  Similarity=0.315  Sum_probs=19.2

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      +-++|++|+||||+|+.+. ++|.
T Consensus         6 IgitG~~gSGKstva~~l~-~~g~   28 (191)
T d1uf9a_           6 IGITGNIGSGKSTVAALLR-SWGY   28 (191)
T ss_dssp             EEEEECTTSCHHHHHHHHH-HTTC
T ss_pred             EEEECCCCCCHHHHHHHHH-HCCC
Confidence            4589999999999999985 5663

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.30  E-value=0.02  Score=47.69  Aligned_cols=20  Identities=30%  Similarity=0.644  Sum_probs=18.2

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      +++.|+||+|||+|++.+.+
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998765

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.018  Score=50.67  Aligned_cols=26  Identities=19%  Similarity=0.314  Sum_probs=23.6

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |+=+.+-|+-|+||||+++.|+++++
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHh
Confidence            45688999999999999999999987

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.22  E-value=0.019  Score=48.29  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=19.6

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -|.|.|.||+|||||++++.+.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999999763

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.21  E-value=0.021  Score=47.71  Aligned_cols=20  Identities=40%  Similarity=0.614  Sum_probs=18.4

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|+||+|||+|+..+.+
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            88999999999999988875

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.019  Score=48.13  Aligned_cols=20  Identities=30%  Similarity=0.493  Sum_probs=18.4

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|.||+|||+|++.+.+
T Consensus         9 v~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           9 LVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998765

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.019  Score=47.68  Aligned_cols=21  Identities=29%  Similarity=0.351  Sum_probs=18.9

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      -++|.|++|+|||+|++.+.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999999875

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.10  E-value=0.02  Score=47.65  Aligned_cols=20  Identities=45%  Similarity=0.757  Sum_probs=17.9

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|++|+|||+|++.+.+
T Consensus         4 i~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhC
Confidence            68899999999999998764

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.08  E-value=0.017  Score=52.36  Aligned_cols=25  Identities=20%  Similarity=0.345  Sum_probs=21.2

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+-|.||.|+|||||+++|++.+.
T Consensus        29 Ei~~iiG~sGsGKSTLl~~i~Gl~~   53 (258)
T d1b0ua_          29 DVISIIGSSGSGKSTFLRCINFLEK   53 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCcc
Confidence            3477999999999999999987553

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.07  E-value=0.01  Score=53.33  Aligned_cols=25  Identities=24%  Similarity=0.546  Sum_probs=21.5

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+.|.||.|||||||+++|++...
T Consensus        32 e~~~iiG~sGsGKSTll~~i~gl~~   56 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAGLDV   56 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCcC
Confidence            3478999999999999999998653

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=93.00  E-value=0.015  Score=52.12  Aligned_cols=25  Identities=24%  Similarity=0.538  Sum_probs=21.6

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+-|.||.|+|||||.++|++.+.
T Consensus        29 ei~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          29 EIFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3466999999999999999998764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.92  E-value=0.0091  Score=49.07  Aligned_cols=21  Identities=33%  Similarity=0.626  Sum_probs=19.2

Q ss_pred             eeEeCCCCCChhHHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~  269 (436)
                      +.|.|.||+|||||++++.+.
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            679999999999999999865

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.021  Score=47.72  Aligned_cols=20  Identities=40%  Similarity=0.748  Sum_probs=18.2

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|.||+|||+|++.+..
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=92.88  E-value=0.025  Score=47.11  Aligned_cols=20  Identities=30%  Similarity=0.501  Sum_probs=18.4

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|.+|+|||+|++.+.+
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.85  E-value=0.026  Score=46.79  Aligned_cols=20  Identities=35%  Similarity=0.532  Sum_probs=18.4

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|.+|+|||+|++.+.+
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999875

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=92.83  E-value=0.011  Score=49.66  Aligned_cols=21  Identities=19%  Similarity=0.398  Sum_probs=18.6

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      -+++.|+||+|||+|++.+.+
T Consensus        14 kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999998753

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.78  E-value=0.022  Score=46.97  Aligned_cols=20  Identities=30%  Similarity=0.519  Sum_probs=18.2

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      +++.|.+|+|||+|++.+.+
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68899999999999999865

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=92.78  E-value=0.024  Score=44.81  Aligned_cols=18  Identities=28%  Similarity=0.290  Sum_probs=15.5

Q ss_pred             cceeeEeCCCCCChhHHH
Q 013823          246 KRGYLLYGPPGTGKSSLI  263 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la  263 (436)
                      .+.++|++|||+|||..+
T Consensus         7 ~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           7 GMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TCEEEECCCTTSSTTTTH
T ss_pred             CCcEEEEcCCCCChhHHH
Confidence            467899999999999665

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=92.77  E-value=0.016  Score=51.93  Aligned_cols=25  Identities=28%  Similarity=0.478  Sum_probs=21.7

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .-+-|.||.|+|||||.++|++.+.
T Consensus        33 ei~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          33 QIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3477999999999999999988764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.73  E-value=0.027  Score=46.66  Aligned_cols=20  Identities=30%  Similarity=0.574  Sum_probs=18.4

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|.+|+|||+|++.+..
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            78999999999999999875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.71  E-value=0.023  Score=47.67  Aligned_cols=21  Identities=19%  Similarity=0.381  Sum_probs=18.6

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      =+++.|++|+|||+|+..+.+
T Consensus         4 KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378899999999999998875

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.68  E-value=0.024  Score=47.19  Aligned_cols=20  Identities=30%  Similarity=0.586  Sum_probs=18.7

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      |+|.|.||+|||||++++.+
T Consensus         8 I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           8 IAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEECSSSSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999975

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.64  E-value=0.028  Score=46.63  Aligned_cols=20  Identities=30%  Similarity=0.561  Sum_probs=17.8

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      +++.|++|+|||+|++.+.+
T Consensus         6 i~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999998754

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.60  E-value=0.012  Score=53.28  Aligned_cols=28  Identities=25%  Similarity=0.383  Sum_probs=22.8

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +...-+.+.||+|+|||||++.|++.+.
T Consensus        42 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          42 EKGETVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHhcCC
Confidence            3445588999999999999998877554

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.57  E-value=0.049  Score=49.00  Aligned_cols=24  Identities=29%  Similarity=0.403  Sum_probs=20.9

Q ss_pred             cceeeEeCCCCCChhHHHHHHHHH
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      +-.++|.|.||+||||++.+|.+.
T Consensus        32 ~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          32 SLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCC
Confidence            346999999999999999999763

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.57  E-value=0.018  Score=48.26  Aligned_cols=20  Identities=30%  Similarity=0.615  Sum_probs=8.4

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|.||||||+|++++.+
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999998864

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.49  E-value=0.015  Score=51.04  Aligned_cols=25  Identities=16%  Similarity=0.300  Sum_probs=22.3

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +-|.+-||-|+||||+++.|++.+.
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3477899999999999999999885

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.47  E-value=0.03  Score=46.84  Aligned_cols=20  Identities=40%  Similarity=0.609  Sum_probs=18.0

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|++|+|||+|++.+..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.45  E-value=0.032  Score=46.51  Aligned_cols=20  Identities=30%  Similarity=0.483  Sum_probs=18.3

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|++|+|||+|++.+++
T Consensus         7 i~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999998876

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=92.38  E-value=0.028  Score=47.20  Aligned_cols=21  Identities=38%  Similarity=0.583  Sum_probs=19.0

Q ss_pred             eeEeCCCCCChhHHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~  269 (436)
                      +.+.|.||+|||||+.++.+.
T Consensus        11 V~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          11 VAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHHCC
Confidence            788999999999999999764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.33  E-value=0.034  Score=46.86  Aligned_cols=21  Identities=19%  Similarity=0.400  Sum_probs=19.0

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      -++|.|.+|+|||+|++.+.+
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999998865

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.31  E-value=0.032  Score=48.75  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=21.1

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |.+-|+-|+||||+++.+++.+.
T Consensus         6 I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCcHHHHHHHHHHHHH
Confidence            56789999999999999999986

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=92.19  E-value=0.012  Score=49.36  Aligned_cols=23  Identities=39%  Similarity=0.463  Sum_probs=20.7

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+|+||.|+|||++..||.-.++
T Consensus        27 tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Confidence            56899999999999999998775

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.15  E-value=0.029  Score=47.88  Aligned_cols=20  Identities=40%  Similarity=0.700  Sum_probs=18.2

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      +++.|+||+|||+|+..+.+
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            78899999999999998865

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=92.15  E-value=0.037  Score=48.71  Aligned_cols=25  Identities=20%  Similarity=0.227  Sum_probs=22.2

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcch
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      +-|+|+.||||||+|+.+++.+|..
T Consensus         4 IgiTG~igSGKsTva~~l~e~~g~~   28 (241)
T d1deka_           4 IFLSGVKRSGKDTTADFIMSNYSAV   28 (241)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHSCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCe
Confidence            5689999999999999999988843

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=92.06  E-value=0.019  Score=48.30  Aligned_cols=24  Identities=21%  Similarity=0.408  Sum_probs=19.6

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHH
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMA  267 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA  267 (436)
                      ...--++|.|+||+|||+|++.+.
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHh
Confidence            333458999999999999998864

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.96  E-value=0.016  Score=48.42  Aligned_cols=20  Identities=30%  Similarity=0.551  Sum_probs=17.2

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      +++.|+||+|||+|+..+++
T Consensus         6 i~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC-
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999987654

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.94  E-value=0.022  Score=51.48  Aligned_cols=24  Identities=42%  Similarity=0.782  Sum_probs=21.4

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -+-|.||.|+|||||+++|++.+.
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHCCCc
Confidence            377999999999999999998765

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.91  E-value=0.038  Score=48.91  Aligned_cols=26  Identities=35%  Similarity=0.427  Sum_probs=21.8

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      +...|.|++|+|||||+.++......
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~  121 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKL  121 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhh
Confidence            56789999999999999999765543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.88  E-value=0.027  Score=47.42  Aligned_cols=20  Identities=35%  Similarity=0.556  Sum_probs=17.8

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      |-|.|+||+|||||++++.+
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            67899999999999999854

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=91.74  E-value=0.037  Score=47.78  Aligned_cols=23  Identities=30%  Similarity=0.401  Sum_probs=19.2

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      +-++|++||||||+++.+. ++|.
T Consensus         5 IgITG~igSGKStv~~~l~-~~G~   27 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLFT-DLGV   27 (205)
T ss_dssp             EEEECSTTSCHHHHHHHHH-TTTC
T ss_pred             EEEECCCCCCHHHHHHHHH-HCCC
Confidence            4479999999999999886 5674

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.67  E-value=0.036  Score=46.84  Aligned_cols=20  Identities=30%  Similarity=0.524  Sum_probs=18.3

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|.+|+|||+|++.+.+
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            78999999999999998865

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=91.59  E-value=0.034  Score=49.45  Aligned_cols=23  Identities=48%  Similarity=0.673  Sum_probs=19.9

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      .-+-|.||.|+|||||.++|++.
T Consensus        26 ei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          26 EILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             CEEECBCCTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            34778999999999999999873

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.56  E-value=0.038  Score=46.58  Aligned_cols=20  Identities=25%  Similarity=0.499  Sum_probs=18.3

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|.+|+|||+|++.+.+
T Consensus         5 ivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=91.53  E-value=0.02  Score=47.70  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=18.5

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      -|.|.|+|++|||||.++|.+
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999988744

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=91.39  E-value=0.051  Score=47.05  Aligned_cols=23  Identities=39%  Similarity=0.517  Sum_probs=19.6

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhcc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLSV  272 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~~  272 (436)
                      +-|+|++|+||||+++.+. .+|.
T Consensus         6 IgitG~igSGKStv~~~l~-~~G~   28 (208)
T d1vhta_           6 VALTGGIGSGKSTVANAFA-DLGI   28 (208)
T ss_dssp             EEEECCTTSCHHHHHHHHH-HTTC
T ss_pred             EEEECCCcCCHHHHHHHHH-HCCC
Confidence            4589999999999999886 6674

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.33  E-value=0.041  Score=46.73  Aligned_cols=20  Identities=20%  Similarity=0.438  Sum_probs=18.0

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++|.|++|+|||+|+..+.+
T Consensus         6 vvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999988765

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.16  E-value=0.035  Score=46.50  Aligned_cols=20  Identities=55%  Similarity=0.675  Sum_probs=18.1

Q ss_pred             eeEeCCCCCChhHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~  268 (436)
                      +.|.|.||+|||||++++.+
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            77899999999999999864

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.10  E-value=0.033  Score=51.16  Aligned_cols=23  Identities=17%  Similarity=0.359  Sum_probs=18.2

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +-+.|++|+||||+++++++.++
T Consensus         7 IgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           7 ISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             EEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHHh
Confidence            66899999999999999999876

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=90.62  E-value=0.06  Score=49.39  Aligned_cols=28  Identities=32%  Similarity=0.589  Sum_probs=23.3

Q ss_pred             CCcce--eeEeCCCCCChhHHHHHHHHHhc
Q 013823          244 AWKRG--YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       244 ~~~rg--~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |..+|  +++.||+|||||+|+..|++...
T Consensus        39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             CCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             cccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence            44455  99999999999999999998654

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.57  E-value=0.055  Score=49.10  Aligned_cols=23  Identities=35%  Similarity=0.603  Sum_probs=20.5

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -+|+||.|+|||++..||+-.++
T Consensus        27 nvlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHHHTSC
T ss_pred             EEEECCCCCcHHHHHHHHHHHhC
Confidence            47999999999999999987665

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=90.27  E-value=0.064  Score=42.73  Aligned_cols=25  Identities=28%  Similarity=0.306  Sum_probs=19.8

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      +..+|.+|.|+|||.++-.++...+
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~~~~~   33 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAYAAQG   33 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHHHTTT
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHcC
Confidence            5679999999999998866655554

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.44  E-value=0.093  Score=43.98  Aligned_cols=22  Identities=32%  Similarity=0.317  Sum_probs=19.1

Q ss_pred             eeeEeCCCCCChhHHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~  269 (436)
                      -+++.|++|+|||+|+..+.+.
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4889999999999999987653

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.42  E-value=0.079  Score=44.61  Aligned_cols=18  Identities=39%  Similarity=0.654  Sum_probs=17.1

Q ss_pred             eeEeCCCCCChhHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAM  266 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~ai  266 (436)
                      ++|.|.+|+|||+|+..+
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999988

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.11  E-value=0.22  Score=42.72  Aligned_cols=23  Identities=35%  Similarity=0.395  Sum_probs=19.9

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      .+|.+|+|+|||.++-+++.+++
T Consensus        88 ~ll~~~tG~GKT~~a~~~~~~~~  110 (206)
T d2fz4a1          88 GCIVLPTGSGKTHVAMAAINELS  110 (206)
T ss_dssp             EEEEESSSTTHHHHHHHHHHHSC
T ss_pred             cEEEeCCCCCceehHHhHHHHhc
Confidence            46788999999999988888776

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.96  E-value=0.094  Score=49.40  Aligned_cols=23  Identities=35%  Similarity=0.632  Sum_probs=20.3

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -+++||.|+|||++..||+-.||
T Consensus        28 ~~i~G~NGsGKS~ileAi~~~lg   50 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAISFVLG   50 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            37899999999999999987665

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=88.42  E-value=0.14  Score=45.93  Aligned_cols=28  Identities=29%  Similarity=0.301  Sum_probs=24.6

Q ss_pred             CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823          244 AWKRGYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      ..||-+++.|--|+||||++.++|..+.
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA   33 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLA   33 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHH
Confidence            4578889999999999999999998774

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=88.14  E-value=0.04  Score=49.00  Aligned_cols=27  Identities=33%  Similarity=0.549  Sum_probs=19.3

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYLSVE  273 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l~~~  273 (436)
                      +..+|.|++|+|||||++++.......
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~~~~  124 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPELGLR  124 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-----
T ss_pred             ceEEEECCCCccHHHHHHhhccHhHhh
Confidence            446788999999999999998765543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=87.55  E-value=0.12  Score=48.26  Aligned_cols=24  Identities=38%  Similarity=0.290  Sum_probs=21.5

Q ss_pred             eeeEeCCCCCChhHHHHHHHHHhc
Q 013823          248 GYLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      -|.|-|+-|+||||+++.++++++
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEEECCccCCHHHHHHHHHHHhc
Confidence            366789999999999999999886

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.40  E-value=0.13  Score=44.81  Aligned_cols=21  Identities=33%  Similarity=0.520  Sum_probs=18.6

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      -+||.|++|+|||+|++.+..
T Consensus         8 KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999998853

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=87.25  E-value=0.13  Score=49.12  Aligned_cols=24  Identities=42%  Similarity=0.535  Sum_probs=20.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHHh
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      +++++.|++|+|||++++.+...+
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~   74 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTG   74 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHH
Confidence            679999999999999987766443

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.03  E-value=0.18  Score=44.56  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=20.9

Q ss_pred             cceeeEeCCCCCChhHHHHHHHH
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      .+.++|+||..+|||++.+++|-
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHH
Confidence            46789999999999999999985

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.01  E-value=0.12  Score=45.15  Aligned_cols=21  Identities=38%  Similarity=0.517  Sum_probs=19.0

Q ss_pred             eeEeCCCCCChhHHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~  269 (436)
                      +++.|..|+|||||++.+...
T Consensus         6 ~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEeeCCCCCHHHHHHHHHhc
Confidence            789999999999999998774

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.30  E-value=0.15  Score=42.53  Aligned_cols=21  Identities=38%  Similarity=0.523  Sum_probs=18.8

Q ss_pred             eeEeCCCCCChhHHHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~  269 (436)
                      ++|.|.+|+|||+|+..+...
T Consensus         5 iv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999998654

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.00  E-value=0.22  Score=41.90  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=18.1

Q ss_pred             ceeeEeCCCCCChhHHHHHHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIAAMANY  269 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~aiA~~  269 (436)
                      +..|+.+|.|+|||.++-.++..
T Consensus        24 ~n~lv~~pTGsGKT~i~~~~~~~   46 (200)
T d1wp9a1          24 TNCLIVLPTGLGKTLIAMMIAEY   46 (200)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEeCCCCcHHHHHHHHHHH
Confidence            45789999999999876666543

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=85.21  E-value=0.38  Score=42.40  Aligned_cols=26  Identities=23%  Similarity=0.270  Sum_probs=20.3

Q ss_pred             CCCcceeeEeCCCCCChhHHHHHHHH
Q 013823          243 KAWKRGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       243 ~~~~rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      .+.+...||+|..|+|||.++-..+.
T Consensus        73 ~~~~~~~LL~GdvGsGKT~V~~~a~~   98 (233)
T d2eyqa3          73 QPLAMDRLVCGDVGFGKTEVAMRAAF   98 (233)
T ss_dssp             SSSCCEEEEECCCCTTTHHHHHHHHH
T ss_pred             ccCccCeEEEcCCCCCcHHHHHHHHH
Confidence            34556789999999999998755553

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.08  E-value=0.18  Score=45.77  Aligned_cols=22  Identities=36%  Similarity=0.602  Sum_probs=19.9

Q ss_pred             eeEeCCCCCChhHHHHHHHHHh
Q 013823          249 YLLYGPPGTGKSSLIAAMANYL  270 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l  270 (436)
                      +++.|++|||||+|+.-++...
T Consensus        71 ~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          71 IGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEeeCCCCCCHHHHHHHHHHHH
Confidence            8999999999999999998763

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=84.78  E-value=0.19  Score=46.92  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=21.1

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |.+-|+-|+||||+++.++++++
T Consensus         8 I~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           8 IYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEESSSSCTTHHHHHHHHTTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHh
Confidence            56789999999999999999886

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.62  E-value=0.29  Score=45.14  Aligned_cols=50  Identities=14%  Similarity=0.364  Sum_probs=32.7

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHH
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLI  263 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la  263 (436)
                      -+||.|.+.+...++|-+.+..++-.. .+    ......++-||+.|+|||...
T Consensus        44 f~FD~vf~~~~~q~~vf~~~~~~lv~~-~l----~G~n~~i~aYGqtgSGKTyT~   93 (323)
T d1bg2a_          44 YAFDRVFQSSTSQEQVYNDCAKKIVKD-VL----EGYNGTIFAYGQTSSGKTHTM   93 (323)
T ss_dssp             EECSEEECTTCCHHHHHHHHTHHHHHH-HH----TTCCEEEEEECSTTSSHHHHH
T ss_pred             eECCEEECCCCCHHHHHHHHHHHHHHH-HH----cCCCcceeeecccCCCCceec
Confidence            357777777666666666555444221 11    123456889999999999986

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.43  E-value=0.14  Score=43.64  Aligned_cols=17  Identities=35%  Similarity=0.522  Sum_probs=15.2

Q ss_pred             ceeeEeCCCCCChhHHH
Q 013823          247 RGYLLYGPPGTGKSSLI  263 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la  263 (436)
                      +.+++.+|+|+|||..+
T Consensus        41 ~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             SCEEEECSSHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHH
Confidence            56899999999999876

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=84.38  E-value=0.34  Score=45.25  Aligned_cols=49  Identities=22%  Similarity=0.220  Sum_probs=30.9

Q ss_pred             CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHH
Q 013823          210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLI  263 (436)
Q Consensus       210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la  263 (436)
                      +||.+.+.+...++|-+.+..++-.     .+--.....++-||+.|+|||...
T Consensus        49 ~FD~vf~~~~~q~~vy~~~~~plv~-----~~l~G~n~ti~aYG~tgSGKT~Tm   97 (354)
T d1goja_          49 TFDRVFDMSCKQSDIFDFSIKPTVD-----DILNGYNGTVFAYGQTGAGKSYTM   97 (354)
T ss_dssp             ECSEEECTTCCHHHHHHHHTHHHHH-----HHTTTCCEEEEEECSTTSSHHHHH
T ss_pred             ECCeEcCCCCCHHHHHHHHHHHHHH-----HhhccCceeEEecccCCCCcceee
Confidence            5777776666666666555444422     111123345888999999999775

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.95  E-value=0.15  Score=43.96  Aligned_cols=50  Identities=20%  Similarity=0.280  Sum_probs=31.4

Q ss_pred             CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCC---CcceeeEeCCCCCChhHH
Q 013823          210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA---WKRGYLLYGPPGTGKSSL  262 (436)
Q Consensus       210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~---~~rg~LL~GPpGtGKT~l  262 (436)
                      +|+++..++++.+.|.+. .  +..+...+...++   .++.+++..|+|||||..
T Consensus         2 ~F~dl~L~~~l~~~l~~~-g--~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla   54 (207)
T d1t6na_           2 GFRDFLLKPELLRAIVDC-G--FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAV   54 (207)
T ss_dssp             CSTTSCCCHHHHHHHHHT-T--CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred             CccccCcCHHHHHHHHHC-C--CCCCCHHHHHHHHHHHcCCCeEEEeccccccccc
Confidence            688998888888877642 1  1112112221111   247799999999999854

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.50  E-value=0.4  Score=45.62  Aligned_cols=23  Identities=30%  Similarity=0.457  Sum_probs=20.4

Q ss_pred             cceeeEeCCCCCChhHHHHHHHH
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      +-.|.+.|.||+|||||+++|.+
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            34689999999999999999975

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.32  E-value=0.19  Score=43.56  Aligned_cols=52  Identities=17%  Similarity=0.243  Sum_probs=32.7

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCC---CcceeeEeCCCCCChhHHH
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA---WKRGYLLYGPPGTGKSSLI  263 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~---~~rg~LL~GPpGtGKT~la  263 (436)
                      .+|+++..++++.+.|.+. .  ...+...+...++   .++.+++..|+|||||...
T Consensus        10 ~sF~~l~l~~~l~~~L~~~-g--~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~   64 (212)
T d1qdea_          10 YKFDDMELDENLLRGVFGY-G--FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF   64 (212)
T ss_dssp             CCGGGGTCCHHHHHHHHHH-T--CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred             cChhhCCCCHHHHHHHHHC-C--CCCCCHHHHHHHHHHHcCCCEEeecccccchhhhh
Confidence            4799998888888887542 1  1122112221111   2467999999999999743

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.95  E-value=0.26  Score=42.79  Aligned_cols=52  Identities=15%  Similarity=0.222  Sum_probs=33.8

Q ss_pred             CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCC---CcceeeEeCCCCCChhHHH
Q 013823          209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA---WKRGYLLYGPPGTGKSSLI  263 (436)
Q Consensus       209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~---~~rg~LL~GPpGtGKT~la  263 (436)
                      .+|+++.+++.+.+.|.+. .  +..+...+...++   .++.+++..|+|||||...
T Consensus        12 ~sF~~l~L~~~l~~~L~~~-g--~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlay   66 (218)
T d2g9na1          12 DSFDDMNLSESLLRGIYAY-G--FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATF   66 (218)
T ss_dssp             CCGGGSCCCHHHHHHHHHH-T--CCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHH
T ss_pred             CCHHHCCCCHHHHHHHHHC-C--CCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhhh
Confidence            4899999999988888542 1  2222222222211   2367999999999999754

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=82.54  E-value=0.26  Score=41.07  Aligned_cols=21  Identities=19%  Similarity=0.408  Sum_probs=18.9

Q ss_pred             eeeEeCCCCCChhHHHHHHHH
Q 013823          248 GYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       248 g~LL~GPpGtGKT~la~aiA~  268 (436)
                      .+-+.|.|++|||||..++.+
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            477999999999999999975

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.53  E-value=0.16  Score=43.56  Aligned_cols=50  Identities=22%  Similarity=0.278  Sum_probs=31.0

Q ss_pred             CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCC---CcceeeEeCCCCCChhHH
Q 013823          210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA---WKRGYLLYGPPGTGKSSL  262 (436)
Q Consensus       210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~---~~rg~LL~GPpGtGKT~l  262 (436)
                      +|+++...+++.+.|.+.  . +..+...+...++   .++.+++.+|+|||||..
T Consensus         2 sF~~l~L~~~l~~~L~~~--g-~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTla   54 (206)
T d1s2ma1           2 TFEDFYLKRELLMGIFEA--G-FEKPSPIQEEAIPVAITGRDILARAKNGTGKTAA   54 (206)
T ss_dssp             CGGGGCCCHHHHHHHHHT--T-CCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHH
T ss_pred             ChHHcCCCHHHHHHHHHC--C-CCCCCHHHHHHHHHHHcCCCEEEecCCcchhhhh
Confidence            789998888888887653  0 1111111111111   136799999999999953

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.29  E-value=0.31  Score=40.29  Aligned_cols=19  Identities=37%  Similarity=0.644  Sum_probs=17.3

Q ss_pred             eeEeCCCCCChhHHHHHHH
Q 013823          249 YLLYGPPGTGKSSLIAAMA  267 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA  267 (436)
                      ++|.|..|+|||+|++.+.
T Consensus         5 ivllG~~~vGKTsl~~r~~   23 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMK   23 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7899999999999998764

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=82.14  E-value=0.2  Score=46.31  Aligned_cols=18  Identities=33%  Similarity=0.602  Sum_probs=15.3

Q ss_pred             ceeeEeCCCCCChhHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIA  264 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~  264 (436)
                      ...||+|.+|||||||..
T Consensus        15 ~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          15 DVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             CEEEEEECTTSCHHHHTC
T ss_pred             CEEEEEccCCCCcccccc
Confidence            347999999999999764

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.76  E-value=0.32  Score=42.34  Aligned_cols=23  Identities=35%  Similarity=0.496  Sum_probs=18.1

Q ss_pred             cceeeEeCCCCCChhHHHHHHHH
Q 013823          246 KRGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       246 ~rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      ++.+++.+|+|+|||..+-..+-
T Consensus        58 g~~~~i~apTGsGKT~~~~~~~~   80 (237)
T d1gkub1          58 KESFAATAPTGVGKTSFGLAMSL   80 (237)
T ss_dssp             TCCEECCCCBTSCSHHHHHHHHH
T ss_pred             CCCEEEEecCCChHHHHHHHHHH
Confidence            36799999999999986655443

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=80.95  E-value=0.26  Score=45.83  Aligned_cols=23  Identities=26%  Similarity=0.405  Sum_probs=18.6

Q ss_pred             eeEeCCCCCChhHHHHHHHHHhc
Q 013823          249 YLLYGPPGTGKSSLIAAMANYLS  271 (436)
Q Consensus       249 ~LL~GPpGtGKT~la~aiA~~l~  271 (436)
                      |.|-|+-|+||||+++.+++.++
T Consensus         7 I~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           7 VYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEECCcCCCHHHHHHHHHHHhC
Confidence            56789999999999999998875

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=80.62  E-value=0.39  Score=40.49  Aligned_cols=25  Identities=20%  Similarity=0.356  Sum_probs=21.2

Q ss_pred             ceeeEeCC-CCCChhHHHHHHHHHhc
Q 013823          247 RGYLLYGP-PGTGKSSLIAAMANYLS  271 (436)
Q Consensus       247 rg~LL~GP-pGtGKT~la~aiA~~l~  271 (436)
                      +-|++.|- +|+|||+++-.||..+.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa   27 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAK   27 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHH
Confidence            45788888 69999999999998875

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=80.15  E-value=0.43  Score=40.83  Aligned_cols=56  Identities=13%  Similarity=0.126  Sum_probs=33.0

Q ss_pred             CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCC----CCcceeeEeCCCCCChhHHHHHHHH
Q 013823          210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGK----AWKRGYLLYGPPGTGKSSLIAAMAN  268 (436)
Q Consensus       210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~----~~~rg~LL~GPpGtGKT~la~aiA~  268 (436)
                      +|+++..++++.+.+.+. .  +..+...+...+    ..++.+++..|.|+|||...-..+.
T Consensus         5 sf~~l~l~~~l~~~l~~~-g--~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~   64 (208)
T d1hv8a1           5 NFNELNLSDNILNAIRNK-G--FEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI   64 (208)
T ss_dssp             CGGGSSCCHHHHHHHHHH-T--CCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHH
T ss_pred             CHHHcCCCHHHHHHHHHC-C--CCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeecccc
Confidence            688888888887776542 1  111111111111    1134789999999999986654443

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=80.09  E-value=0.29  Score=44.95  Aligned_cols=18  Identities=33%  Similarity=0.602  Sum_probs=15.2

Q ss_pred             ceeeEeCCCCCChhHHHH
Q 013823          247 RGYLLYGPPGTGKSSLIA  264 (436)
Q Consensus       247 rg~LL~GPpGtGKT~la~  264 (436)
                      ...||+|.+|||||||..
T Consensus        15 ~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          15 DVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             CEEEEECSTTSSHHHHHC
T ss_pred             CEEEEEccCCCCccccee
Confidence            346899999999999873