Citrus Sinensis ID: 013825

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430------
MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQGKEEIHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESREMCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRLKIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVVTRKGGFFNHPTARLQ
cccccccccEEEEEEcccccccccccccEEEEEEEEEEcccEEEEEEEEccccccccccccccccccccccHHHHcccccHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHcccccccccccEEcHHHHHHHHccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccHHHcccccEEEEEccHHHHcccccccEEEEEcccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccc
ccccccccEEEEEEEEcccccccccccEEEEEEEEEEEccccEEEEEEEEEEcccccccccHHHEEEccccHHHHcccccHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHcccccccccccEcHHHHHHHHHccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHccccccccccccHHHcccccccccccccccHHcccccHHcccccccccccccccccccccccccccHEEEEEEcccccccccEEEEEEEccccEEEEccccEEEEEEcccccccccccEEEEEEcccHHHHHHHHHHHHHHHHccccccccccccEEEEEccccccccEEEcc
mgptqdrseiaffdvettvptrpgqrfailEFGAILvcpkkleelhnystlvrpadpeliSSLSVrcngitpdavvssptfadIADTVFDILHGRIWAGHNILRFDCARIREAFAeigrpapepkgtiDSLALLTQRFGRRAGDMKMASLATYFglgqqthrsLDDVRMNLEVLKYCATVLFlesslpdiftvnswvspnattrsrsnaksspegtsqnlstpsskfkfenasnasppdqgkeeihpifslvtqgtaevDSVLAVttadqpnpfdmsqlsnqmetqslqpddtmedksapesremcstasvsegssgyagfmepdevslssisdgvvplfpgsqiqkiKLLHNDVILQLCCSRLKirfgistkfvdqagrprlsFVVDISQSLCTVLDACEVIVRKLVedsgsssewrhvvtrkggffnhptarlq
mgptqdrseiaffdvettvptrpgqRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITpdavvssptfADIADTVFDILHGRIWAGHNILRFDCARIREAFAEigrpapepkgtidsLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFTVNSWVSPNAttrsrsnaksspegtsqnlstpsskfkfENASNASPPDQGKEEIHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESREMCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRLKIRFGISTkfvdqagrPRLSFVVDISQSLCTVLDACEVIVRKlvedsgsssewrhvvtrkggffnhptarlq
MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQGKEEIHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESREMCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRLKIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVVTRKGGFFNHPTARLQ
*********IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR*******TIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFTVNSWV*************************************************PIFSLVTQGTAEVDSVLAV******************************************************************ISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRLKIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVED*****EWRHVVTRKGGFF********
*****DRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIF******************************TP******************************************TTADQPNPFDMSQLSN***************K*APESREMCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRLKIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEV******************VTRKGGFFNHPTARL*
MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFTVNSWVSPN************************SKFKF************KEEIHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQ*********************************SGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRLKIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVE********RHVVTRKGGFFNHPTARLQ
*****DRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFTVNSW************************************************IHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPD***************************AGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRLKIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLV****SSSEWRHVVTRKGGFFNHPTARLQ
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQGKEEIHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESREMCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRLKIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVVTRKGGFFNHPTARLQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query436 2.2.26 [Sep-21-2011]
Q10384 645 Uncharacterized protein R yes no 0.311 0.210 0.318 8e-07
Q8XJR3 1449 DNA polymerase III PolC-t yes no 0.399 0.120 0.248 2e-05
O83649215 DNA polymerase III subuni yes no 0.362 0.734 0.281 7e-05
P03007243 DNA polymerase III subuni N/A no 0.282 0.506 0.297 0.0001
P0A1G9243 DNA polymerase III subuni yes no 0.282 0.506 0.297 0.0001
P0A1H0243 DNA polymerase III subuni N/A no 0.282 0.506 0.297 0.0001
Q8RA32 1401 DNA polymerase III PolC-t yes no 0.357 0.111 0.245 0.0004
>sp|Q10384|Y2191_MYCTU Uncharacterized protein Rv2191/MT2247 OS=Mycobacterium tuberculosis GN=Rv2191 PE=4 SV=1 Back     alignment and function desciption
 Score = 55.5 bits (132), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 18/154 (11%)

Query: 28  AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
           AI E GA+ VC   +  L  ++TLV P     I    VR  GIT   V ++PT   +   
Sbjct: 65  AITEIGAVKVCGGAV--LGEFATLVNPQ--HSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120

Query: 88  VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR------ 141
            F+     +   HN   FD   +R A        P+P+       L T R  RR      
Sbjct: 121 FFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQ------VLCTMRLARRVLSRDE 173

Query: 142 AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
           A  +++A+LA  F +    THR+LDD R  ++VL
Sbjct: 174 APSVRLAALARLFAVASNPTHRALDDARATVDVL 207

Mycobacterium tuberculosis (taxid: 1773)
>sp|Q8XJR3|DPO3_CLOPE DNA polymerase III PolC-type OS=Clostridium perfringens (strain 13 / Type A) GN=polC PE=3 SV=1 Back     alignment and function description
>sp|O83649|DPO3E_TREPA DNA polymerase III subunit epsilon OS=Treponema pallidum (strain Nichols) GN=dnaQ PE=3 SV=1 Back     alignment and function description
>sp|P03007|DPO3E_ECOLI DNA polymerase III subunit epsilon OS=Escherichia coli (strain K12) GN=dnaQ PE=1 SV=1 Back     alignment and function description
>sp|P0A1G9|DPO3E_SALTY DNA polymerase III subunit epsilon OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=dnaQ PE=3 SV=1 Back     alignment and function description
>sp|P0A1H0|DPO3E_SALTI DNA polymerase III subunit epsilon OS=Salmonella typhi GN=dnaQ PE=3 SV=1 Back     alignment and function description
>sp|Q8RA32|DPO3_THETN DNA polymerase III PolC-type OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=polC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query436
225457353497 PREDICTED: uncharacterized protein LOC10 0.961 0.843 0.685 1e-167
147817752535 hypothetical protein VITISV_031720 [Viti 0.963 0.785 0.681 1e-166
255547339501 exonuclease, putative [Ricinus communis] 0.965 0.840 0.671 1e-160
297733948447 unnamed protein product [Vitis vinifera] 0.846 0.825 0.634 1e-145
224124082470 predicted protein [Populus trichocarpa] 0.899 0.834 0.627 1e-143
356512002501 PREDICTED: uncharacterized protein LOC10 0.967 0.842 0.604 1e-143
449440810471 PREDICTED: uncharacterized protein LOC10 0.899 0.832 0.621 1e-142
356562862501 PREDICTED: uncharacterized protein LOC10 0.967 0.842 0.606 1e-142
15240840468 exonuclease family protein [Arabidopsis 0.889 0.829 0.584 1e-129
42568689487 exonuclease-like protein [Arabidopsis th 0.922 0.825 0.566 1e-129
>gi|225457353|ref|XP_002281793.1| PREDICTED: uncharacterized protein LOC100265514 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 298/435 (68%), Positives = 345/435 (79%), Gaps = 16/435 (3%)

Query: 1   MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI 60
           MGP ++RSEIAFFDVETTVPTR GQ FAILEFGAILVCP+KL EL +YSTLVRP D  L+
Sbjct: 1   MGPGEERSEIAFFDVETTVPTRVGQGFAILEFGAILVCPRKLVELESYSTLVRPHDLSLV 60

Query: 61  SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
           SSLSVRCNGIT DAVVS+P F DIAD V+DILHGRIWAGHNILRFDCARIREAFAEIGRP
Sbjct: 61  SSLSVRCNGITRDAVVSAPNFRDIADRVYDILHGRIWAGHNILRFDCARIREAFAEIGRP 120

Query: 121 APEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATV 180
           APEPKG+IDSLALLTQRFGRRAGDMKMA+LATYFGLGQQTHRSLDDVRMNLEVLKYCATV
Sbjct: 121 APEPKGSIDSLALLTQRFGRRAGDMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATV 180

Query: 181 LFLESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQ 240
           LFLESSLPDIFT NSWVSPNA TRSRSN K+SP G + N+STPSS  KFEN  ++     
Sbjct: 181 LFLESSLPDIFTTNSWVSPNAVTRSRSNGKASPVGMNLNMSTPSSSIKFEN--HSISSPS 238

Query: 241 GKEEIHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAP 300
               +  I +LV   T            +QP+PF++  LS+++E +SL+PD  +E+K   
Sbjct: 239 THSSMEGILNLVEPNT------------NQPDPFNLGALSSEIERESLKPDYALEEKPVT 286

Query: 301 ESREMCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLC 360
           ES EM ST + S+    YAGF++P EVS++SIS   VPL+ G+  +++++LHNDV L L 
Sbjct: 287 ESLEMLSTTTASQDCCDYAGFLDPAEVSVASISASFVPLYRGT--RRMQILHNDVKLLLH 344

Query: 361 CSRLKIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHV 420
           C++L++RFGIST+FVD AGRPRLSFVVD S SLC VLDAC+ +  KL  DSGSSSEWR V
Sbjct: 345 CTQLRVRFGISTRFVDPAGRPRLSFVVDGSPSLCQVLDACDQLAYKLSVDSGSSSEWRPV 404

Query: 421 VTRKGGFFNHPTARL 435
           V RK GF N PT RL
Sbjct: 405 VIRKTGFLNTPTIRL 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147817752|emb|CAN66660.1| hypothetical protein VITISV_031720 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255547339|ref|XP_002514727.1| exonuclease, putative [Ricinus communis] gi|223546331|gb|EEF47833.1| exonuclease, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297733948|emb|CBI15195.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224124082|ref|XP_002330100.1| predicted protein [Populus trichocarpa] gi|222871234|gb|EEF08365.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356512002|ref|XP_003524710.1| PREDICTED: uncharacterized protein LOC100788659 [Glycine max] Back     alignment and taxonomy information
>gi|449440810|ref|XP_004138177.1| PREDICTED: uncharacterized protein LOC101203629 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356562862|ref|XP_003549687.1| PREDICTED: uncharacterized protein LOC100818863 [Glycine max] Back     alignment and taxonomy information
>gi|15240840|ref|NP_196388.1| exonuclease family protein [Arabidopsis thaliana] gi|9759593|dbj|BAB11450.1| exonuclease-like protein [Arabidopsis thaliana] gi|332003813|gb|AED91196.1| exonuclease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42568689|ref|NP_200947.3| exonuclease-like protein [Arabidopsis thaliana] gi|111074224|gb|ABH04485.1| At5g61390 [Arabidopsis thaliana] gi|332010078|gb|AED97461.1| exonuclease-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query436
TAIR|locus:2160359468 AT5G07710 [Arabidopsis thalian 0.532 0.495 0.740 3.5e-122
TAIR|locus:2019100506 AT1G74390 [Arabidopsis thalian 0.958 0.826 0.555 3.9e-115
TAIR|locus:2163208487 AT5G61390 [Arabidopsis thalian 0.676 0.605 0.574 1.7e-82
TAIR|locus:2135302255 AT4G39810 [Arabidopsis thalian 0.550 0.941 0.549 2.5e-65
UNIPROTKB|Q10384 645 MT2247 "Uncharacterized protei 0.355 0.240 0.305 1.3e-06
TIGR_CMR|CJE_0502233 CJE_0502 "exonuclease, DNA pol 0.362 0.678 0.279 1.8e-06
UNIPROTKB|Q74DD3181 GSU1383 "3'-to-5' exonuclease, 0.348 0.839 0.278 2.8e-05
TIGR_CMR|GSU_1383181 GSU_1383 "exonuclease" [Geobac 0.348 0.839 0.278 2.8e-05
UNIPROTKB|Q9KPX9247 VC_2233 "DNA polymerase III, e 0.438 0.773 0.268 3.3e-05
TIGR_CMR|VC_2233247 VC_2233 "DNA polymerase III, e 0.438 0.773 0.268 3.3e-05
TAIR|locus:2160359 AT5G07710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 836 (299.3 bits), Expect = 3.5e-122, Sum P(2) = 3.5e-122
 Identities = 177/239 (74%), Positives = 192/239 (80%)

Query:     1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI 60
             M P +DRSEIAFFDVETTVP R GQRFAILEFG+ILVCPKKL EL +Y+TLV+PAD  LI
Sbjct:     1 MDP-EDRSEIAFFDVETTVPKR-GQRFAILEFGSILVCPKKLTELRSYTTLVQPADLSLI 58

Query:    61 SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
             SSLSVRCNGI  D VV +P FADIADTV+DILHGRIWAGHNILRFDCARIREAFAEIGR 
Sbjct:    59 SSLSVRCNGIKRDDVVLAPLFADIADTVYDILHGRIWAGHNILRFDCARIREAFAEIGRQ 118

Query:   121 APEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATV 180
              PEPKG IDSL LLTQ+FGRRAGDMKMA+LA YFGLG QTHRSLDDVRMNLEVLKYCATV
Sbjct:   119 PPEPKGAIDSLGLLTQKFGRRAGDMKMATLARYFGLGNQTHRSLDDVRMNLEVLKYCATV 178

Query:   181 LFLESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPD 239
             LFLESSLP     NS VSP  T  SR    +S EG   N  T S +    + ++A+ PD
Sbjct:   179 LFLESSLPYAHVDNS-VSPE-TISSRRRIDASREG---NTVTTSVRLPSISENSAAQPD 232
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004527 "exonuclease activity" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
TAIR|locus:2019100 AT1G74390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163208 AT5G61390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135302 AT4G39810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q10384 MT2247 "Uncharacterized protein Rv2191/MT2247" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0502 CJE_0502 "exonuclease, DNA polymerase III, epsilon subunit family" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
UNIPROTKB|Q74DD3 GSU1383 "3'-to-5' exonuclease, putative" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1383 GSU_1383 "exonuclease" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KPX9 VC_2233 "DNA polymerase III, epsilon subunit" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2233 VC_2233 "DNA polymerase III, epsilon subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.7LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.129.103.1
hypothetical protein (455 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query436
smart00479169 smart00479, EXOIII, exonuclease domain in DNA-poly 1e-30
cd06127159 cd06127, DEDDh, DEDDh 3'-5' exonuclease domain fam 1e-27
pfam00929161 pfam00929, RNase_T, Exonuclease 4e-21
COG0847243 COG0847, DnaQ, DNA polymerase III, epsilon subunit 4e-20
PRK07883 557 PRK07883, PRK07883, hypothetical protein; Validate 4e-16
PRK06063313 PRK06063, PRK06063, DNA polymerase III subunit eps 2e-13
cd06130156 cd06130, DNA_pol_III_epsilon_like, an uncharacteri 1e-12
TIGR00573217 TIGR00573, dnaq, exonuclease, DNA polymerase III, 2e-12
cd06133176 cd06133, ERI-1_3'hExo_like, DEDDh 3'-5' exonucleas 2e-10
cd06131167 cd06131, DNA_pol_III_epsilon_Ecoli_like, DEDDh 3'- 2e-09
PRK08074 928 PRK08074, PRK08074, bifunctional ATP-dependent DNA 9e-09
TIGR01407 850 TIGR01407, dinG_rel, DnaQ family exonuclease/DinG 1e-08
PRK08517257 PRK08517, PRK08517, DNA polymerase III subunit eps 5e-08
TIGR01405 1213 TIGR01405, polC_Gram_pos, DNA polymerase III, alph 1e-07
PRK06807313 PRK06807, PRK06807, DNA polymerase III subunit eps 2e-07
PRK05711240 PRK05711, PRK05711, DNA polymerase III subunit eps 9e-07
PRK00448 1437 PRK00448, polC, DNA polymerase III PolC; Validated 4e-06
PRK07740244 PRK07740, PRK07740, hypothetical protein; Provisio 1e-05
COG2176 1444 COG2176, PolC, DNA polymerase III, alpha subunit ( 2e-05
PRK06310250 PRK06310, PRK06310, DNA polymerase III subunit eps 4e-05
cd06138183 cd06138, ExoI_N, N-terminal DEDDh 3'-5' exonucleas 6e-05
PRK06309232 PRK06309, PRK06309, DNA polymerase III subunit eps 3e-04
TIGR01406225 TIGR01406, dnaQ_proteo, DNA polymerase III, epsilo 3e-04
cd06144152 cd06144, REX4_like, DEDDh 3'-5' exonuclease domain 0.003
>gnl|CDD|214685 smart00479, EXOIII, exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases Back     alignment and domain information 
 Score =  115 bits (291), Expect = 1e-30
 Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 9/176 (5%)

Query: 9   EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCN 68
            +   D ETT    PG+   I+E  A+ V   ++ E+  + T V+P  P  I+  +   +
Sbjct: 1   TLVVIDCETT-GLDPGK-DEIIEIAAVDVDGGEIIEV--FDTYVKPDRP--ITDYATEIH 54

Query: 69  GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
           GITP+ +  +PTF ++ + + + L GRI    N   FD   ++     +G   P     I
Sbjct: 55  GITPEMLDDAPTFEEVLEELLEFLRGRILVAGNSAHFDLRFLKLEHPRLGIKQPPKLPVI 114

Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQ--THRSLDDVRMNLEVLKYCATVLF 182
           D+L L             +  LA    L      HR+LDD R   ++ K     L 
Sbjct: 115 DTLKLARATNPGL-PKYSLKKLAKRLLLEVIQRAHRALDDARATAKLFKKLLERLE 169

Length = 169
>gnl|CDD|176648 cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family Back     alignment and domain information
>gnl|CDD|216200 pfam00929, RNase_T, Exonuclease Back     alignment and domain information
>gnl|CDD|223916 COG0847, DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|236123 PRK07883, PRK07883, hypothetical protein; Validated Back     alignment and domain information
>gnl|CDD|180377 PRK06063, PRK06063, DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>gnl|CDD|99834 cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III Back     alignment and domain information
>gnl|CDD|129663 TIGR00573, dnaq, exonuclease, DNA polymerase III, epsilon subunit family Back     alignment and domain information
>gnl|CDD|99836 cd06133, ERI-1_3'hExo_like, DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins Back     alignment and domain information
>gnl|CDD|99835 cd06131, DNA_pol_III_epsilon_Ecoli_like, DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins Back     alignment and domain information
>gnl|CDD|236148 PRK08074, PRK08074, bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>gnl|CDD|233398 TIGR01407, dinG_rel, DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>gnl|CDD|236281 PRK08517, PRK08517, DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>gnl|CDD|233397 TIGR01405, polC_Gram_pos, DNA polymerase III, alpha chain, Gram-positive type Back     alignment and domain information
>gnl|CDD|235864 PRK06807, PRK06807, DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>gnl|CDD|235574 PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated Back     alignment and domain information
>gnl|CDD|236085 PRK07740, PRK07740, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|180525 PRK06310, PRK06310, DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>gnl|CDD|99841 cd06138, ExoI_N, N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins Back     alignment and domain information
>gnl|CDD|180524 PRK06309, PRK06309, DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>gnl|CDD|130473 TIGR01406, dnaQ_proteo, DNA polymerase III, epsilon subunit, Proteobacterial Back     alignment and domain information
>gnl|CDD|99847 cd06144, REX4_like, DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 436
PRK09146239 DNA polymerase III subunit epsilon; Validated 100.0
PRK07883 557 hypothetical protein; Validated 100.0
PRK07942232 DNA polymerase III subunit epsilon; Provisional 100.0
PRK06807313 DNA polymerase III subunit epsilon; Validated 100.0
smart00479169 EXOIII exonuclease domain in DNA-polymerase alpha 100.0
PRK05711240 DNA polymerase III subunit epsilon; Provisional 100.0
TIGR01406225 dnaQ_proteo DNA polymerase III, epsilon subunit, P 99.98
cd06130156 DNA_pol_III_epsilon_like an uncharacterized bacter 99.98
PRK08517257 DNA polymerase III subunit epsilon; Provisional 99.98
TIGR00573217 dnaq exonuclease, DNA polymerase III, epsilon subu 99.98
PRK06195309 DNA polymerase III subunit epsilon; Validated 99.98
cd06131167 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl 99.98
PRK06310250 DNA polymerase III subunit epsilon; Validated 99.97
PRK07740244 hypothetical protein; Provisional 99.97
PRK06063313 DNA polymerase III subunit epsilon; Provisional 99.97
PRK07748207 sporulation inhibitor KapD; Provisional 99.97
cd06136177 TREX1_2 DEDDh 3'-5' exonuclease domain of three pr 99.97
PRK09145202 DNA polymerase III subunit epsilon; Validated 99.97
PRK06309232 DNA polymerase III subunit epsilon; Validated 99.97
PRK05168211 ribonuclease T; Provisional 99.97
TIGR01298200 RNaseT ribonuclease T. in gamma-subdivision Proteo 99.97
PRK07247195 DNA polymerase III subunit epsilon; Validated 99.97
cd06134189 RNaseT DEDDh 3'-5' exonuclease domain of RNase T. 99.97
PRK06722281 exonuclease; Provisional 99.97
COG2176 1444 PolC DNA polymerase III, alpha subunit (gram-posit 99.97
cd06133176 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain o 99.97
PRK07246 820 bifunctional ATP-dependent DNA helicase/DNA polyme 99.96
cd06138183 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain o 99.96
PRK08074 928 bifunctional ATP-dependent DNA helicase/DNA polyme 99.96
TIGR01405 1213 polC_Gram_pos DNA polymerase III, alpha chain, Gra 99.96
PRK05601377 DNA polymerase III subunit epsilon; Validated 99.96
cd06127159 DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh 99.96
TIGR01407 850 dinG_rel DnaQ family exonuclease/DinG family helic 99.95
PRK07983219 exodeoxyribonuclease X; Provisional 99.95
cd06137161 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the 99.95
COG0847243 DnaQ DNA polymerase III, epsilon subunit and relat 99.94
PRK09182294 DNA polymerase III subunit epsilon; Validated 99.94
cd06149157 ISG20 DEDDh 3'-5' exonuclease domain of Interferon 99.94
PTZ00315582 2'-phosphotransferase; Provisional 99.94
cd06144152 REX4_like DEDDh 3'-5' exonuclease domain of RNA ex 99.93
PF00929164 RNase_T: Exonuclease; InterPro: IPR013520 This ent 99.93
cd06135173 Orn DEDDh 3'-5' exonuclease domain of oligoribonuc 99.93
cd06145150 REX1_like DEDDh 3'-5' exonuclease domain of RNA ex 99.93
PRK11779476 sbcB exonuclease I; Provisional 99.93
PRK05359181 oligoribonuclease; Provisional 99.93
PRK00448 1437 polC DNA polymerase III PolC; Validated 99.92
KOG0542280 consensus Predicted exonuclease [Replication, reco 99.7
COG5018210 KapD Inhibitor of the KinA pathway to sporulation, 99.63
COG2925475 SbcB Exonuclease I [DNA replication, recombination 99.56
KOG2249280 consensus 3'-5' exonuclease [Replication, recombin 99.53
cd05160199 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain 99.43
cd06143174 PAN2_exo DEDDh 3'-5' exonuclease domain of the euk 99.33
COG1949184 Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA 99.23
cd0612596 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonucleas 99.14
KOG3242208 consensus Oligoribonuclease (3'->5' exoribonucleas 99.11
cd05780195 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease dom 98.88
COG3359278 Predicted exonuclease [DNA replication, recombinat 98.87
PHA02570220 dexA exonuclease; Provisional 98.85
PF13482164 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 98.81
cd05781188 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of 98.74
KOG2248380 consensus 3'-5' exonuclease [Replication, recombin 98.67
cd05779204 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domai 98.66
KOG4793318 consensus Three prime repair exonuclease [Replicat 98.62
cd05785207 DNA_polB_like2_exo Uncharacterized bacterial subgr 98.59
cd06139193 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease 98.58
cd05783204 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of 98.34
cd05777230 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain 98.3
PRK05755 880 DNA polymerase I; Provisional 98.23
cd05784193 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of 98.18
cd05782208 DNA_polB_like1_exo Uncharacterized bacterial subgr 98.07
PF10108209 DNA_pol_B_exo2: Predicted 3'-5' exonuclease relate 98.04
PF04857262 CAF1: CAF1 family ribonuclease; InterPro: IPR00694 98.02
PF01612176 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00 97.99
cd05778231 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease 97.84
smart00486471 POLBc DNA polymerase type-B family. DNA polymerase 97.7
PF03104325 DNA_pol_B_exo1: DNA polymerase family B, exonuclea 97.69
PTZ00166 1054 DNA polymerase delta catalytic subunit; Provisiona 97.64
PRK05762 786 DNA polymerase II; Reviewed 97.51
PHA02528 881 43 DNA polymerase; Provisional 97.45
cd05776234 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonucleas 97.13
TIGR03491457 RecB family nuclease, putative, TM0106 family. Mem 96.98
cd06146193 mut-7_like_exo DEDDy 3'-5' exonuclease domain of C 96.85
COG0349361 Rnd Ribonuclease D [Translation, ribosomal structu 96.79
KOG0304239 consensus mRNA deadenylase subunit [RNA processing 96.64
PHA02524498 43A DNA polymerase subunit A; Provisional 96.5
PRK10829373 ribonuclease D; Provisional 96.22
cd06141170 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and 95.97
cd06129161 RNaseD_like DEDDy 3'-5' exonuclease domain of RNas 95.94
cd00007155 35EXOc 3'-5' exonuclease. The 35EXOc domain is res 95.68
KOG12751118 consensus PAB-dependent poly(A) ribonuclease, subu 95.63
TIGR00592 1172 pol2 DNA polymerase (pol2). This family is based o 95.62
COG0417 792 PolB DNA polymerase elongation subunit (family B) 95.54
TIGR01388367 rnd ribonuclease D. This model describes ribonucle 95.26
PHA03036 1004 DNA polymerase; Provisional 95.09
KOG4793318 consensus Three prime repair exonuclease [Replicat 93.2
PRK05761 787 DNA polymerase I; Reviewed 93.19
cd06140178 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' 93.08
cd06148197 Egl_like_exo DEDDy 3'-5' exonuclease domain of Dro 92.72
smart00474172 35EXOc 3'-5' exonuclease. 3\' -5' exonuclease proo 91.45
COG0749 593 PolA DNA polymerase I - 3'-5' exonuclease and poly 90.01
KOG1798 2173 consensus DNA polymerase epsilon, catalytic subuni 88.44
PHA02563 630 DNA polymerase; Provisional 85.16
KOG0969 1066 consensus DNA polymerase delta, catalytic subunit 84.87
cd06142178 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribon 84.5
TIGR00593 887 pola DNA polymerase I. This family is based on the 81.19
>PRK09146 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information 
Probab=100.00  E-value=3.6e-32  Score=263.55  Aligned_cols=177  Identities=19%  Similarity=0.240  Sum_probs=155.4

Q ss_pred             CCCCCCCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCcceEeeeEEEEEcCCCCCCCChhhHHhcCCCHHHHhCCCCH
Q 013825            2 GPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTF   81 (436)
Q Consensus         2 ~~~~~~~~fV~fDLETTGl~p~g~~~~IIEIGAV~V~~~~levl~sfstLVrP~~~~~I~p~a~kltGIT~e~La~Ap~f   81 (436)
                      +++..+.+|++||+||||+++  ..++|||||+|.++++.....+.|+++|+|..  +|++.+.++||||.++|+++|+|
T Consensus        41 ~~~~~~~~~vviD~ETTGl~p--~~d~IieIg~v~v~~~~i~~~~~~~~li~P~~--~i~~~~~~IhGIt~e~l~~ap~~  116 (239)
T PRK09146         41 DTPLSEVPFVALDFETTGLDA--EQDAIVSIGLVPFTLQRIRCRQARHWVVKPRR--PLEEESVVIHGITHSELQDAPDL  116 (239)
T ss_pred             CCCcccCCEEEEEeECCCCCC--CCCcEEEEEEEEEECCeEeecceEEEEECCCC--CCChhhhhhcCCCHHHHhCCCCH
Confidence            457778899999999999997  67999999999999985544678999999998  79999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCEEEEEccccchHHHHHHHHHHcCCCCCCCCceeeHHHHHHHHhcCC------------CCCCCHHH
Q 013825           82 ADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR------------AGDMKMAS  149 (436)
Q Consensus        82 ~eVl~~f~efL~g~vLVaHNa~~FD~~fLr~a~~r~Gi~~p~~~~~IDTl~Larr~l~~~------------~~~~kL~~  149 (436)
                      .+++.+|.+++.+.++||||+ .||+.||++++.+++...+ ...+|||+.++++.+.+.            .++++|++
T Consensus       117 ~evl~~l~~~~~~~~lVaHna-~FD~~fL~~~l~~~~~~~~-~~~~iDTl~Lar~l~~~~~~~~~~~~~~~~~~~~~L~~  194 (239)
T PRK09146        117 ERILDELLEALAGKVVVVHYR-RIERDFLDQALRNRIGEGI-EFPVIDTMEIEARIQRKQAGGLWNRLKGKKPESIRLAD  194 (239)
T ss_pred             HHHHHHHHHHhCCCEEEEECH-HHHHHHHHHHHHHhcCCCC-CCceechHHHHHHHcccccccccchhccCCCCCCCHHH
Confidence            999999999999999999999 9999999999988644333 235899999988754321            26789999


Q ss_pred             HHHHhCCC-CCCCChHHHHHHHHHHHHHHHHHhhhh
Q 013825          150 LATYFGLG-QQTHRSLDDVRMNLEVLKYCATVLFLE  184 (436)
Q Consensus       150 LA~~fGI~-~~~HrALdDAraTa~VLk~L~~~l~le  184 (436)
                      ++++||++ ..+|+|++||++|++||.++.++.+.+
T Consensus       195 l~~~~gl~~~~~H~Al~DA~ata~l~~~~~~~~~~~  230 (239)
T PRK09146        195 SRLRYGLPAYSPHHALTDAIATAELLQAQIAHHFSP  230 (239)
T ss_pred             HHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999 579999999999999999999887643

>PRK07883 hypothetical protein; Validated Back     alignment and domain information
>PRK07942 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK06807 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases Back     alignment and domain information
>PRK05711 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial Back     alignment and domain information
>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III Back     alignment and domain information
>PRK08517 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family Back     alignment and domain information
>PRK06195 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins Back     alignment and domain information
>PRK06310 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK07740 hypothetical protein; Provisional Back     alignment and domain information
>PRK06063 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK07748 sporulation inhibitor KapD; Provisional Back     alignment and domain information
>cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins Back     alignment and domain information
>PRK09145 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK06309 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK05168 ribonuclease T; Provisional Back     alignment and domain information
>TIGR01298 RNaseT ribonuclease T Back     alignment and domain information
>PRK07247 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T Back     alignment and domain information
>PRK06722 exonuclease; Provisional Back     alignment and domain information
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] Back     alignment and domain information
>cd06133 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06138 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type Back     alignment and domain information
>PRK05601 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06127 DEDDh DEDDh 3'-5' exonuclease domain family Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PRK07983 exodeoxyribonuclease X; Provisional Back     alignment and domain information
>cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins Back     alignment and domain information
>COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK09182 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>PTZ00315 2'-phosphotransferase; Provisional Back     alignment and domain information
>cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>PF00929 RNase_T: Exonuclease; InterPro: IPR013520 This entry includes a variety of exonuclease proteins, such as ribonuclease T [] and the epsilon subunit of DNA polymerase III Back     alignment and domain information
>cd06135 Orn DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins Back     alignment and domain information
>cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins Back     alignment and domain information
>PRK11779 sbcB exonuclease I; Provisional Back     alignment and domain information
>PRK05359 oligoribonuclease; Provisional Back     alignment and domain information
>PRK00448 polC DNA polymerase III PolC; Validated Back     alignment and domain information
>KOG0542 consensus Predicted exonuclease [Replication, recombination and repair] Back     alignment and domain information
>COG5018 KapD Inhibitor of the KinA pathway to sporulation, predicted exonuclease [General function prediction only] Back     alignment and domain information
>COG2925 SbcB Exonuclease I [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2249 consensus 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2 Back     alignment and domain information
>COG1949 Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA processing and modification] Back     alignment and domain information
>cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily Back     alignment and domain information
>KOG3242 consensus Oligoribonuclease (3'->5' exoribonuclease) [RNA processing and modification] Back     alignment and domain information
>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>COG3359 Predicted exonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02570 dexA exonuclease; Provisional Back     alignment and domain information
>PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A Back     alignment and domain information
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>KOG2248 consensus 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase Back     alignment and domain information
>KOG4793 consensus Three prime repair exonuclease [Replication, recombination and repair] Back     alignment and domain information
>cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases Back     alignment and domain information
>cd05783 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase Back     alignment and domain information
>PRK05755 DNA polymerase I; Provisional Back     alignment and domain information
>cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases Back     alignment and domain information
>cd05782 DNA_polB_like1_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>PF10108 DNA_pol_B_exo2: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; InterPro: IPR019288 This entry represents various prokaryotic 3'-5' exonucleases and hypothetical proteins Back     alignment and domain information
>PF04857 CAF1: CAF1 family ribonuclease; InterPro: IPR006941 CAF1 is an RNase of the DEDD superfamily, and a subunit of the Ccr4-Not complex that mediates 3' to 5' mRNA deadenylation Back     alignment and domain information
>PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides Back     alignment and domain information
>cd05778 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta, a family-B DNA polymerase Back     alignment and domain information
>smart00486 POLBc DNA polymerase type-B family Back     alignment and domain information
>PF03104 DNA_pol_B_exo1: DNA polymerase family B, exonuclease domain Several related DNA polymerases were too dissimilar to be included Back     alignment and domain information
>PTZ00166 DNA polymerase delta catalytic subunit; Provisional Back     alignment and domain information
>PRK05762 DNA polymerase II; Reviewed Back     alignment and domain information
>PHA02528 43 DNA polymerase; Provisional Back     alignment and domain information
>cd05776 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase Back     alignment and domain information
>TIGR03491 RecB family nuclease, putative, TM0106 family Back     alignment and domain information
>cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins Back     alignment and domain information
>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0304 consensus mRNA deadenylase subunit [RNA processing and modification] Back     alignment and domain information
>PHA02524 43A DNA polymerase subunit A; Provisional Back     alignment and domain information
>PRK10829 ribonuclease D; Provisional Back     alignment and domain information
>cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins Back     alignment and domain information
>cd06129 RNaseD_like DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins Back     alignment and domain information
>cd00007 35EXOc 3'-5' exonuclease Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>TIGR00592 pol2 DNA polymerase (pol2) Back     alignment and domain information
>COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01388 rnd ribonuclease D Back     alignment and domain information
>PHA03036 DNA polymerase; Provisional Back     alignment and domain information
>KOG4793 consensus Three prime repair exonuclease [Replication, recombination and repair] Back     alignment and domain information
>PRK05761 DNA polymerase I; Reviewed Back     alignment and domain information
>cd06140 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' exonuclease domain of Bacillus stearothermophilus DNA polymerase I and similar family-A DNA polymerases Back     alignment and domain information
>cd06148 Egl_like_exo DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins Back     alignment and domain information
>smart00474 35EXOc 3'-5' exonuclease Back     alignment and domain information
>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1798 consensus DNA polymerase epsilon, catalytic subunit A [Replication, recombination and repair] Back     alignment and domain information
>PHA02563 DNA polymerase; Provisional Back     alignment and domain information
>KOG0969 consensus DNA polymerase delta, catalytic subunit [Replication, recombination and repair] Back     alignment and domain information
>cd06142 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins Back     alignment and domain information
>TIGR00593 pola DNA polymerase I Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query436
2gui_A194 Structure And Function Of Cyclized Versions Of The 9e-06
1j53_A186 Structure Of The N-Terminal Exonuclease Domain Of T 9e-06
>pdb|2GUI|A Chain A, Structure And Function Of Cyclized Versions Of The Proofread Exonuclease Subunit Of E. Coli Dna Polymerase Iii Length = 194 Back     alignment and structure 
Iteration: 1

 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 13  FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
            D ETT   + G  +    I+E GA+ V  ++L     H Y    R  DPE     +   
Sbjct: 14  LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPE-----AFGV 68
Query: 68  NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
           +GI  + ++  PTFA++AD   D + G     HN   FD   +   F+ + R  P+    
Sbjct: 69  HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNA-AFDIGFMDYEFSLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
               DSLA+  + F G+R
Sbjct: 128 CKVTDSLAVARKMFPGKR 145
>pdb|1J53|A Chain A, Structure Of The N-Terminal Exonuclease Domain Of The Epsilon Subunit Of E.Coli Dna Polymerase Iii At Ph 8.5 Length = 186 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query436
2p1j_A186 POLIII, DNA polymerase III POLC-type; structural g 2e-22
1w0h_A204 3'-5' exonuclease ERI1; nuclease domain, hydrolase 5e-21
1zbu_A349 ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; 7e-20
2xri_A224 ERI1 exoribonuclease 3; hydrolase, metal binding; 9e-20
1zbh_A299 3'-5' exonuclease ERI1; histone mRNA 3'-END-specif 2e-18
3mxm_B242 Three prime repair exonuclease 1; RNAse H-like fol 7e-18
3u3y_B314 Three prime repair exonuclease 1; RNAse H fold, 3' 3e-17
1y97_A238 Three prime repair exonuclease 2; TREX2, hydrolase 4e-16
3cg7_A308 CRN-4, cell death-related nuclease 4; hydrolase, a 7e-16
2f96_A224 Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolas 3e-14
3v9w_A235 Ribonuclease T; DEDD nucleases family, EXO-nucleas 3e-14
2igi_A180 Oligoribonuclease; RNAse, exoribonuclease, exonucl 3e-06
2gui_A194 DNA polymerase III epsilon subunit; DNA polymerase 5e-06
3tr8_A186 Oligoribonuclease; transcription, hydrolase; 2.50A 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
1wlj_A189 Interferon stimulated gene 20KDA; exoribonuclease, 8e-04
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} Length = 186 Back     alignment and structure
 Score = 93.0 bits (232), Expect = 2e-22
 Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 23/174 (13%)

Query: 11  AFFDVETTVPTRPGQRFA---ILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
              D ETT     G       I+E GA+ +  +  + +  Y TL++P+    IS  S   
Sbjct: 15  VVLDFETT-----GLDPQVDEIIEIGAVKI--QGGQIVDEYHTLIKPSRE--ISRKSSEI 65

Query: 68  NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
            GIT + + +  +  ++       L   I   HN   FD   +R    ++     E    
Sbjct: 66  TGITQEMLENKRSIEEVLPEFLGFLEDSIIVAHNA-NFDYRFLRLWIKKVMGLDWERP-Y 123

Query: 128 IDSLALLTQRFGRRAGDM---KMASLATYFGLG-QQTHRSLDDVRMNLEVLKYC 177
           ID+LAL      +    +    + S+    GLG  + HR+LDD R+  +V    
Sbjct: 124 IDTLAL-----AKSLLKLRSYSLDSVVEKLGLGPFRHHRALDDARVTAQVFLRF 172
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5 Length = 204 Back     alignment and structure
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens} Length = 349 Back     alignment and structure
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens} Length = 224 Back     alignment and structure
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} Length = 299 Back     alignment and structure
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A Length = 242 Back     alignment and structure
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B* Length = 314 Back     alignment and structure
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5 Length = 238 Back     alignment and structure
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A Length = 308 Back     alignment and structure
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5 Length = 224 Back     alignment and structure
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A Length = 235 Back     alignment and structure
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A Length = 180 Back     alignment and structure
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A* Length = 194 Back     alignment and structure
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii} Length = 186 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5 Length = 189 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query436
2p1j_A186 POLIII, DNA polymerase III POLC-type; structural g 100.0
1w0h_A204 3'-5' exonuclease ERI1; nuclease domain, hydrolase 100.0
1y97_A238 Three prime repair exonuclease 2; TREX2, hydrolase 100.0
2gui_A194 DNA polymerase III epsilon subunit; DNA polymerase 99.98
3mxm_B242 Three prime repair exonuclease 1; RNAse H-like fol 99.98
2f96_A224 Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolas 99.97
1zbh_A299 3'-5' exonuclease ERI1; histone mRNA 3'-END-specif 99.97
3u3y_B314 Three prime repair exonuclease 1; RNAse H fold, 3' 99.97
2xri_A224 ERI1 exoribonuclease 3; hydrolase, metal binding; 99.97
3v9w_A235 Ribonuclease T; DEDD nucleases family, EXO-nucleas 99.97
1zbu_A349 ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; 99.97
3cg7_A308 CRN-4, cell death-related nuclease 4; hydrolase, a 99.96
2igi_A180 Oligoribonuclease; RNAse, exoribonuclease, exonucl 99.96
3tr8_A186 Oligoribonuclease; transcription, hydrolase; 2.50A 99.95
2qxf_A482 Exodeoxyribonuclease I; alpha-beta domain, DNAQ su 99.95
2gbz_A194 Oligoribonuclease; ORN, deddh, structural genomics 99.95
1wlj_A189 Interferon stimulated gene 20KDA; exoribonuclease, 99.95
4hec_A190 Putative uncharacterized protein; ssgcid, structur 99.07
2kfn_A 605 Klenow fragment of DNA polymerase I; complex (poly 98.98
4gmj_B285 CCR4-NOT transcription complex subunit 7; mRNA dec 98.55
1x9m_A 698 DNA polymerase; DNA ploymerase, N-2-acetylaminoflu 98.55
1qht_A 775 Protein (DNA polymerase); archaea, hyperthermostab 98.4
1noy_A388 Protein (DNA polymerase (E.C.2.7.7.7)); exonucleas 98.26
3iay_A 919 DNA polymerase delta catalytic subunit; protein-DN 98.17
1s5j_A 847 DNA polymerase I; replication, disulfide bonds, tr 98.09
2d5r_A252 CCR4-NOT transcription complex subunit 7; poly(A) 98.03
1uoc_A289 POP2; hydrolase, DEDD nuclease, mRNA degradation, 97.93
2p51_A333 SPCC18.06C protein; DEDD nuclease fold, hydrolase, 97.9
2gv9_A 1193 DNA polymerase; polymerase alpha fold, transferase 97.73
4dfk_A 540 DNA polymerase I, thermostable; DNA polymerase, tr 97.71
3k59_A 786 POL II, DNA polymerase II; protein-DNA complex, DN 97.39
3qex_A 903 DNA polymerase, GP43; difluorotoluene nucleoside; 97.38
3saf_A428 Exosome component 10; exoribonuclease, RNA exosome 96.32
2a1r_A430 Poly(A)-specific ribonuclease PARN; DEDD, nuclease 96.23
3d45_A507 Poly(A)-specific ribonuclease PARN; CAP analogue, 96.1
3pv8_A 592 DNA polymerase I; DNA polymerase I, protein-DNA co 95.97
2e6m_A208 Werner syndrome ATP-dependent helicase homolog; AP 95.93
1yt3_A375 Ribonuclease D, RNAse D; exoribonuclease, exonucle 95.74
2hbj_A410 Exosome complex exonuclease RRP6; RNA metabolism, 95.68
1vk0_A206 Hypothetical protein; homohexamer, AT5G06450, stru 95.67
2py5_A 575 DNA polymerase; protein-DNA complex, replication, 95.41
3cym_A440 Uncharacterized protein BAD_0989; structural genom 94.84
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} Back     alignment and structure
Probab=100.00  E-value=1.1e-33  Score=259.99  Aligned_cols=170  Identities=26%  Similarity=0.350  Sum_probs=149.6

Q ss_pred             CCCCCCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCcceEeeeEEEEEcCCCCCCCChhhHHhcCCCHHHHhCCCCHH
Q 013825            3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFA   82 (436)
Q Consensus         3 ~~~~~~~fV~fDLETTGl~p~g~~~~IIEIGAV~V~~~~levl~sfstLVrP~~~~~I~p~a~kltGIT~e~La~Ap~f~   82 (436)
                      ++..+.+||+||+||||+++  ..++|||||+|.++.+  +++++|+++|+|..  +|+++++++||||.++++++|++.
T Consensus         7 ~~l~~~~~v~iD~ETTGl~~--~~~~IieIg~v~~~~g--~i~~~f~~lv~P~~--~i~~~~~~i~GIt~~~l~~~~~~~   80 (186)
T 2p1j_A            7 STFGDATFVVLDFETTGLDP--QVDEIIEIGAVKIQGG--QIVDEYHTLIKPSR--EISRKSSEITGITQEMLENKRSIE   80 (186)
T ss_dssp             ------CEEEEEEEESCSCT--TTCCEEEEEEEEEETT--EEEEEEEEECBCSS--CCCHHHHHHHCCCHHHHTTCCBHH
T ss_pred             CcCcCCCEEEEEEECCCCCC--CCCeEEEEEEEEEECC--EEEEEEEEEECcCC--CCCHHHhhhcCCCHHHHhcCCCHH
Confidence            44677899999999999987  5789999999999876  66789999999998  799999999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEEccccchHHHHHHHHHHcCCCCCCCCceeeHHHHHHHHhcCCCCCCCHHHHHHHhCCC-CCCC
Q 013825           83 DIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTH  161 (436)
Q Consensus        83 eVl~~f~efL~g~vLVaHNa~~FD~~fLr~a~~r~Gi~~p~~~~~IDTl~Larr~l~~~~~~~kL~~LA~~fGI~-~~~H  161 (436)
                      +++.+|.+|+++.++||||+ .||+.||++++.++|++++.+ .++||+.+++..+  ..++++|.+|+++||++ ..+|
T Consensus        81 ~v~~~~~~~l~~~~lv~hn~-~fD~~~L~~~~~~~g~~~~~~-~~iDt~~l~~~~~--~~~~~~L~~l~~~~gi~~~~~H  156 (186)
T 2p1j_A           81 EVLPEFLGFLEDSIIVAHNA-NFDYRFLRLWIKKVMGLDWER-PYIDTLALAKSLL--KLRSYSLDSVVEKLGLGPFRHH  156 (186)
T ss_dssp             HHHHHHHHHSSSCEEEETTH-HHHHHHHHHHHHHHHCCCCCC-CEEEHHHHHHHHT--CCSCCSHHHHHHHTTCCSTTCC
T ss_pred             HHHHHHHHHHCCCEEEEECc-HHHHHHHHHHHHHcCCCCCCC-CEEeHHHHHHHHh--hcCCCCHHHHHHHcCCCCCCCc
Confidence            99999999999999999999 999999999999999987543 5999999988765  56789999999999998 5789


Q ss_pred             ChHHHHHHHHHHHHHHHHHhh
Q 013825          162 RSLDDVRMNLEVLKYCATVLF  182 (436)
Q Consensus       162 rALdDAraTa~VLk~L~~~l~  182 (436)
                      +|++||++|+++|.++.++..
T Consensus       157 ~Al~Da~~t~~l~~~l~~~~~  177 (186)
T 2p1j_A          157 RALDDARVTAQVFLRFVEMMK  177 (186)
T ss_dssp             HHHHHHHHHHHHHHHHTTCC-
T ss_pred             CHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999776533
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A* Back     alignment and structure
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A Back     alignment and structure
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5 Back     alignment and structure
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} Back     alignment and structure
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B* Back     alignment and structure
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens} Back     alignment and structure
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A Back     alignment and structure
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens} Back     alignment and structure
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A Back     alignment and structure
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A Back     alignment and structure
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii} Back     alignment and structure
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A* Back     alignment and structure
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis} Back     alignment and structure
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A* Back     alignment and structure
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} Back     alignment and structure
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A* Back     alignment and structure
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A Back     alignment and structure
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A* Back     alignment and structure
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 Back     alignment and structure
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9 Back     alignment and structure
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9 Back     alignment and structure
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A Back     alignment and structure
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* Back     alignment and structure
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ... Back     alignment and structure
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* Back     alignment and structure
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ... Back     alignment and structure
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A Back     alignment and structure
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A Back     alignment and structure
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus} Back     alignment and structure
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ... Back     alignment and structure
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* Back     alignment and structure
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5 Back     alignment and structure
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A* Back     alignment and structure
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A Back     alignment and structure
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A* Back     alignment and structure
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 436
d1y97a1228 c.55.3.5 (A:1-228) Three prime repair exonuclease 2e-18
d1w0ha_200 c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapien 4e-18
d3b6oa1226 c.55.3.5 (A:9-234) Three prime repair exonuclease 3e-13
d2guia1174 c.55.3.5 (A:7-180) N-terminal exonuclease domain o 5e-11
d2qxfa1467 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli 7e-09
d2f96a1202 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas ae 1e-08
d2igia1180 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia 2e-07
d1wlja_173 c.55.3.5 (A:) Interferon-stimulated gene 20 kDa pr 1e-04
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]} Length = 228 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Three prime repair exonuclease 2, TREX2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.6 bits (200), Expect = 2e-18
 Identities = 37/232 (15%), Positives = 59/232 (25%), Gaps = 37/232 (15%)

Query: 1   MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEE--------------LH 46
           M          F D+E T    P     I E     V    LE               L 
Sbjct: 1   MSEAPRAETFVFLDLEAT--GLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLD 58

Query: 47  NYSTLVRPADPELISSLSVRCNGITPDAVVS--SPTFADIADTVFDILHGR-----IWAG 99
             +  + P  P   ++ +    G++ + +       F             R         
Sbjct: 59  KLTLCMCPERP--FTAKASEITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVA 116

Query: 100 HNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQ--------RFGRRAGDMKMASLA 151
           HN   +D   +      +G   P     +D+L  L             R      + SL 
Sbjct: 117 HNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLF 176

Query: 152 T-YFGL-GQQTHRSLDDVRMNLEVLKYCATVL--FLESSLPDIFTVNSWVSP 199
             YF       H +  DV   L +  + A  L  + +        +     P
Sbjct: 177 HRYFRAEPSAAHSAEGDVHTLLLIFLHRAAELLAWADEQARGWAHIEPMYLP 228
>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 200 Back     information, alignment and structure
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 226 Back     information, alignment and structure
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]} Length = 174 Back     information, alignment and structure
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]} Length = 467 Back     information, alignment and structure
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]} Length = 202 Back     information, alignment and structure
>d2igia1 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia coli [TaxId: 562]} Length = 180 Back     information, alignment and structure
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} Length = 173 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query436
d2guia1174 N-terminal exonuclease domain of the epsilon subun 99.97
d3b6oa1226 Three prime repair exonuclease 1, TREX1 {Mouse (Mu 99.96
d1w0ha_200 Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 960 99.96
d1y97a1228 Three prime repair exonuclease 2, TREX2 {Human (Ho 99.96
d1wlja_173 Interferon-stimulated gene 20 kDa protein, ISG20 { 99.95
d2qxfa1467 Exonuclease I {Escherichia coli K12 (Escherichia c 99.89
d2f96a1202 Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287 99.87
d2igia1180 Oligoribonuclease {Escherichia coli [TaxId: 562]} 99.79
d2d5ra1252 CCR4-NOT transcription complex subunit 7, CAF1 {Hu 98.64
d1x9ma1204 Exonuclease domain of T7 DNA polymerase {Bacteriop 98.45
d1tgoa1347 Exonuclease domain of family B DNA polymerases {Ar 98.2
d1uoca_286 Pop2 RNase D domain {Baker's yeast (Saccharomyces 97.97
d1kfsa1195 Exonuclease domain of prokaryotic DNA polymerase { 97.95
d2hhva1171 Exonuclease domain of prokaryotic DNA polymerase { 97.68
d1s5ja1410 Exonuclease domain of family B DNA polymerases {Su 97.57
d1yt3a3193 Ribonuclease D, catalytic domain {Escherichia coli 97.5
d1q8ia1388 Exonuclease domain of family B DNA polymerases {Es 97.41
d2hbka2292 Exosome complex exonuclease RRP6 {Baker's yeast (S 96.94
d1noya_372 Exonuclease domain of family B DNA polymerases {Ba 96.78
d1ih7a1375 Exonuclease domain of family B DNA polymerases {Ba 96.5
d1vk0a_206 Hypothetical protein AT5G06450 {Thale-cress (Arabi 96.19
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.3e-29  Score=222.26  Aligned_cols=164  Identities=25%  Similarity=0.385  Sum_probs=143.1

Q ss_pred             cEEEEEEecCCCCCCC---CCCcEEEEEEEEEeCCcceEeeeEEEEEcCCCCCCCChhhHHhcCCCHHHHhCCCCHHHHH
Q 013825            9 EIAFFDVETTVPTRPG---QRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIA   85 (436)
Q Consensus         9 ~fV~fDLETTGl~p~g---~~~~IIEIGAV~V~~~~levl~sfstLVrP~~~~~I~p~a~kltGIT~e~La~Ap~f~eVl   85 (436)
                      ++||||+||||+++.+   ..++|||||||+++++. .+.++|+.+|+|..  ++++.+.++||||.+++.+++++.+++
T Consensus         1 r~vv~D~ETTGl~~~~~~~~~d~IIeIg~v~~~~~~-~~~~~~~~~v~P~~--~i~~~~~~i~gIt~e~~~~~~~~~~~~   77 (174)
T d2guia1           1 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRR-LTGNNFHVYLKPDR--LVDPEAFGVHGIADEFLLDKPTFAEVA   77 (174)
T ss_dssp             EEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTE-ECSCCEEEECCCSS--CCCHHHHHHHCCCHHHHTTSCCHHHHH
T ss_pred             CEEEEEeeCCCCCcccccCCCCEEEEEEEEEEECCE-EeeeEEEEEeccCc--cchhhhhhccccchhhhhcchhHHHHH
Confidence            5899999999998742   35789999999998773 34578999999987  899999999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEEccccchHHHHHHHHHHcCCCCCCC---CceeeHHHHHHHHhcCCCCCCCHHHHHHHhCCCC---C
Q 013825           86 DTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP---KGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQ---Q  159 (436)
Q Consensus        86 ~~f~efL~g~vLVaHNa~~FD~~fLr~a~~r~Gi~~p~~---~~~IDTl~Larr~l~~~~~~~kL~~LA~~fGI~~---~  159 (436)
                      .+|.+|++++.+|+||. .||..++...+++++...+..   ..++|++.+++..+..  ..++|..++++||++.   .
T Consensus        78 ~~~~~~~~~~~~v~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~L~~l~~~~~~~~~~~~  154 (174)
T d2guia1          78 DEFMDYIRGAELVIHNA-AFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPG--KRNSLDALCARYEIDNSKRT  154 (174)
T ss_dssp             HHHHHHHTTSEEEETTH-HHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTT--SCCSHHHHHHHTTCCCTTCS
T ss_pred             HHHHHhcCCCeEEEeec-chhhHHHHHHHHHhCCCCCCcccccchhhHHHHHHHHcCC--CCCCHHHHHHHcCCCCCCCC
Confidence            99999999999999999 999999999999998776543   4578999998865433  3579999999999972   4


Q ss_pred             CCChHHHHHHHHHHHHHHH
Q 013825          160 THRSLDDVRMNLEVLKYCA  178 (436)
Q Consensus       160 ~HrALdDAraTa~VLk~L~  178 (436)
                      +|+|++||++|++||.+|.
T Consensus       155 ~H~Al~Da~~ta~v~~~l~  173 (174)
T d2guia1         155 LHGALLDAQILAEVYLAMT  173 (174)
T ss_dssp             SCCHHHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHHHHc
Confidence            7999999999999999864
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]} Back     information, alignment and structure
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2igia1 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d5ra1 c.55.3.9 (A:11-262) CCR4-NOT transcription complex subunit 7, CAF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Back     information, alignment and structure
>d1uoca_ c.55.3.9 (A:) Pop2 RNase D domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} Back     information, alignment and structure
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]} Back     information, alignment and structure
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure