Citrus Sinensis ID: 013861

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-----
MASSVFHAPCGAPSIKQLECQKYVGLRPSVTLRFNCVKTKTVTTRRLVVTASKSHDGTTKKLGISDAECEAAVVAGNIPEAPPVPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLCGEKR
ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccEEEEEEEEccccccccccccccccccccHHHHHHHHHHHccccEEEEccccccccccccccccccccccHHHHHHHHHHHcccEEEEEEccccccccccccccccccccEEcHHHHHHHHHHHHHHHHccccEEccccccccHHHHHHHHHHHccccccccHHHHHHHHcccccccHHHcccccccccccccccccccHHHHHHHHHHHHHccccEEEcccccccccccccHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHccccccHHHHHHHHHHHHHccccEEEHHcHHHHHHHHHcccc
ccccccccccccccEEEEcccccEccccccccccccccccccccEEEEEEccHccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccHHHHcccHHHHHHHccccccHHHEEEEEEEEccccccEcccccccEEEcHHHHHHHHHHHHHHccccEEEEEEcccHHHcEcccHHHHccccHHHHHHHHHHHHccccEEEEEEcccccEcccccccEcccccEcHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHccccccEEEEEEEEEccHHHHHHHHHHccHHHHcccccccEccccHHHHHHHHHHHHHccccEEEEEcccccEEccHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHccc
massvfhapcgapsikqlecqkyvglrpsvtlrfncvktktvtTRRLVVTaskshdgttkklgiSDAECEAAVvagnipeappvppkpaapagtpvvpslplsrrprrnrkspamrasfqetnlspanfvyplfihegeedtpigampgcyrlgwrhGLVQEVAKARdvgvnsvvlfpkvpdalksptgdeayndnglvprTIWLlkdrypdlviytdvaldpyssdghdgivredgvimnDETVHQLCKQAVSQAragadvvspsdmmdGRVGAIRAALDAEGFQHVSIMSYTAKYassfygpfrealdsnprfgdkktyqmnpANYREALVEAqadesegaDILLFSVLgsqvkpglpylDVIRLLRdkyplpiaayqvsgeysmikaggalkMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLCGEKR
massvfhapcgapsikqlecQKYVGlrpsvtlrfncvktktvttrrlvvtaskshdgttkklgiSDAECEAAVVAGNIPEAPPVPPKpaapagtpvvpslplsrrprrnrkspamrasfqetnlspaNFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFpkvpdalksptgdeayndngLVPRTIWLLKDRYPDLVIYTDvaldpyssdGHDGIVREDGVIMNDETVHQLCKQAVSQARAgadvvspsdmMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLCGEKR
MASSVFHAPCGAPSIKQLECQKYVGLRPSVTLRFNCvktktvttrrlvvtASKSHDGTTKKLGISDAECEAAVVAGNIpeappvppkpaapagtpvvpslplsrrprrNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLCGEKR
*******APCGAPSIKQLECQKYVGLRPSVTLRFNCVKTKTVTTRRLVVTA************I**AECEAAVV***************************************************PANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKV**********************IWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQA*************DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREAL********************************GADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLC****
********PCGAPSIKQLECQKYVGLR************************************************************************LPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLCG***
********PCGAPSIKQLECQKYVGLRPSVTLRFNCVKTKTVTTRRLVVTASKSHDGTTKKLGISDAECEAAVVAGNIPEAPPVP*********PVVPSLPLS*************ASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQ*********DVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLCGEKR
****VFHAPCGAPSIKQLECQKYVGLRPSVTLRFNCVKTKTVTTRRLVVTAS****************C*A*****N*******************VPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLCGE**
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASSVFHAPCGAPSIKQLECQKYVGLRPSVTLRFNCVKTKTVTTRRLVVTASKSHDGTTKKLGISDAECEAAVVAGNIPEAPPVPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLCGEKR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query435 2.2.26 [Sep-21-2011]
Q9SFH9430 Delta-aminolevulinic acid yes no 0.981 0.993 0.812 0.0
P43210412 Delta-aminolevulinic acid yes no 0.940 0.992 0.796 0.0
P24493433 Delta-aminolevulinic acid N/A no 0.974 0.979 0.759 0.0
P30124398 Delta-aminolevulinic acid N/A no 0.836 0.914 0.878 0.0
Q5Z8V9426 Delta-aminolevulinic acid yes no 0.974 0.995 0.718 1e-177
Q42836428 Delta-aminolevulinic acid N/A no 0.970 0.985 0.704 1e-173
P45623417 Delta-aminolevulinic acid N/A no 0.827 0.863 0.771 1e-161
Q43058430 Delta-aminolevulinic acid N/A no 0.822 0.832 0.760 1e-147
Q42682390 Delta-aminolevulinic acid N/A no 0.783 0.874 0.596 1e-117
Q8KCJ0328 Delta-aminolevulinic acid yes no 0.731 0.969 0.526 6e-87
>sp|Q9SFH9|HEM2_ARATH Delta-aminolevulinic acid dehydratase, chloroplastic OS=Arabidopsis thaliana GN=HEMB PE=1 SV=1 Back     alignment and function desciption
 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/438 (81%), Positives = 395/438 (90%), Gaps = 11/438 (2%)

Query: 1   MASS-VFHAPCGAPSIKQLECQKYVGLRPSVTLRFNCVKTKTVTTRR--LVVTASKSHDG 57
           MA++ +F+A C  PS + ++C+ Y+GLR +V+ + +   ++  T++R  LVV AS+S +G
Sbjct: 1   MATTPIFNASCSFPSTRGIDCKSYIGLRSNVS-KVSVASSRIATSQRRNLVVRASESGNG 59

Query: 58  TTKKLGISDAECEAAVVAGNIPEAPPVPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMRA 117
             KKLG+SDAECEAAV AGN+PEAPPVPPKPAAP GTP++  L LSRRPRRNR SP  RA
Sbjct: 60  HAKKLGMSDAECEAAVAAGNVPEAPPVPPKPAAPVGTPIIKPLNLSRRPRRNRASPVTRA 119

Query: 118 SFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLF 177
           +FQET++SPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKAR VGVNS+VLF
Sbjct: 120 AFQETDISPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARAVGVNSIVLF 179

Query: 178 PKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237
           PKVP+ALK+ TGDEAYNDNGLVPRTI LLKD+YPDL+IYTDVALDPYSSDGHDGIVREDG
Sbjct: 180 PKVPEALKNSTGDEAYNDNGLVPRTIRLLKDKYPDLIIYTDVALDPYSSDGHDGIVREDG 239

Query: 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKY 297
           VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIR+ALDAEGFQ+VSIMSYTAKY
Sbjct: 240 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRSALDAEGFQNVSIMSYTAKY 299

Query: 298 ASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVKP 357
           ASSFYGPFREALDSNPRFGDKKTYQMNPANYREAL+EA+ DE+EGADILL       VKP
Sbjct: 300 ASSFYGPFREALDSNPRFGDKKTYQMNPANYREALIEAREDEAEGADILL-------VKP 352

Query: 358 GLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADI 417
           GLPYLD+IRLLRDK PLPIAAYQVSGEYSMIKAGG LKMIDE++VMMESLMCLRRAGADI
Sbjct: 353 GLPYLDIIRLLRDKSPLPIAAYQVSGEYSMIKAGGVLKMIDEEKVMMESLMCLRRAGADI 412

Query: 418 ILTYFALQAARCLCGEKR 435
           ILTYFALQAA CLCGEKR
Sbjct: 413 ILTYFALQAATCLCGEKR 430
Catalyzes an early step in the biosynthesis of tetrapyrroles. Binds two molecules of 5-aminolevulinate per subunit, each at a distinct site, and catalyzes their condensation to form porphobilinogen.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 4
>sp|P43210|HEM2_SOYBN Delta-aminolevulinic acid dehydratase, chloroplastic OS=Glycine max GN=HEMB PE=2 SV=1 Back     alignment and function description
>sp|P24493|HEM2_SPIOL Delta-aminolevulinic acid dehydratase, chloroplastic OS=Spinacia oleracea GN=HEMB PE=1 SV=2 Back     alignment and function description
>sp|P30124|HEM2_PEA Delta-aminolevulinic acid dehydratase, chloroplastic (Fragment) OS=Pisum sativum GN=HEMB PE=1 SV=1 Back     alignment and function description
>sp|Q5Z8V9|HEM2_ORYSJ Delta-aminolevulinic acid dehydratase, chloroplastic OS=Oryza sativa subsp. japonica GN=HEMB PE=2 SV=1 Back     alignment and function description
>sp|Q42836|HEM2_HORVU Delta-aminolevulinic acid dehydratase, chloroplastic OS=Hordeum vulgare GN=HEMB PE=2 SV=1 Back     alignment and function description
>sp|P45623|HEM2_SELMA Delta-aminolevulinic acid dehydratase, chloroplastic OS=Selaginella martensii GN=HEMB PE=3 SV=1 Back     alignment and function description
>sp|Q43058|HEM2_PHYPA Delta-aminolevulinic acid dehydratase, chloroplastic OS=Physcomitrella patens subsp. patens GN=HEMB PE=2 SV=1 Back     alignment and function description
>sp|Q42682|HEM2_CHLRE Delta-aminolevulinic acid dehydratase, chloroplastic OS=Chlamydomonas reinhardtii GN=HEMB PE=2 SV=1 Back     alignment and function description
>sp|Q8KCJ0|HEM2_CHLTE Delta-aminolevulinic acid dehydratase OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=hemB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query435
255545372432 porphobilinogen synthase, putative [Rici 0.983 0.990 0.870 0.0
224063068430 predicted protein [Populus trichocarpa] 0.977 0.988 0.845 0.0
297838745430 hypothetical protein ARALYDRAFT_339208 [ 0.981 0.993 0.817 0.0
15222443430 delta-aminolevulinic acid dehydratase [A 0.981 0.993 0.812 0.0
449441790430 PREDICTED: delta-aminolevulinic acid deh 0.983 0.995 0.839 0.0
225459583430 PREDICTED: delta-aminolevulinic acid deh 0.983 0.995 0.832 0.0
13183730426 aminolevulinate dehydratase [Raphanus sa 0.977 0.997 0.816 0.0
1097877430 aminolevulinate dehydratase 0.970 0.981 0.811 0.0
351721201412 delta-aminolevulinic acid dehydratase, c 0.940 0.992 0.796 0.0
1170215433 RecName: Full=Delta-aminolevulinic acid 0.974 0.979 0.759 0.0
>gi|255545372|ref|XP_002513746.1| porphobilinogen synthase, putative [Ricinus communis] gi|223546832|gb|EEF48329.1| porphobilinogen synthase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/439 (87%), Positives = 404/439 (92%), Gaps = 11/439 (2%)

Query: 1   MASSVFH-APCGAPSIKQLECQKYVGLRPSV-TLRFNC--VKTKTVTTRRLVVTASKSHD 56
           MAS++F+ A C  P+ K L+C+ YV L+P+V +LRFNC     K    R L+V AS+ HD
Sbjct: 1   MASTIFNNAACTVPARKGLDCKNYVALKPTVHSLRFNCGTNSVKVCPKRVLMVRASERHD 60

Query: 57  GTTKKLGISDAECEAAVVAGNIPEAPPVPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMR 116
           G  KKLG++DAECEAAVV+GN+PEAPPVPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMR
Sbjct: 61  GPIKKLGLTDAECEAAVVSGNVPEAPPVPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMR 120

Query: 117 ASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVL 176
           ASFQETN+SP+NFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLV+EVAKARDVGVNSVVL
Sbjct: 121 ASFQETNISPSNFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVEEVAKARDVGVNSVVL 180

Query: 177 FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236
           FPKVPDALKSPTGDEAYNDNGLVPRTI LLKD+YPDLVIYTDVALDPYSSDGHDGIVRED
Sbjct: 181 FPKVPDALKSPTGDEAYNDNGLVPRTIRLLKDKYPDLVIYTDVALDPYSSDGHDGIVRED 240

Query: 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAK 296
           GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAK
Sbjct: 241 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAK 300

Query: 297 YASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLFSVLGSQVK 356
           YASSFYGPFREALDSNPRFGDKKTYQMNPANYREAL+EA  DESEGADILL       VK
Sbjct: 301 YASSFYGPFREALDSNPRFGDKKTYQMNPANYREALIEAHEDESEGADILL-------VK 353

Query: 357 PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGAD 416
           PGLPYLD+IRLLRDK PLPIAAYQVSGEYSMIKAGG LKMIDE+RVMMESLMCLRRAGAD
Sbjct: 354 PGLPYLDIIRLLRDKSPLPIAAYQVSGEYSMIKAGGVLKMIDEERVMMESLMCLRRAGAD 413

Query: 417 IILTYFALQAARCLCGEKR 435
           IILTYFALQAARCLCGEKR
Sbjct: 414 IILTYFALQAARCLCGEKR 432

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224063068|ref|XP_002300981.1| predicted protein [Populus trichocarpa] gi|222842707|gb|EEE80254.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297838745|ref|XP_002887254.1| hypothetical protein ARALYDRAFT_339208 [Arabidopsis lyrata subsp. lyrata] gi|297333095|gb|EFH63513.1| hypothetical protein ARALYDRAFT_339208 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15222443|ref|NP_177132.1| delta-aminolevulinic acid dehydratase [Arabidopsis thaliana] gi|145327197|ref|NP_001077800.1| delta-aminolevulinic acid dehydratase [Arabidopsis thaliana] gi|12229846|sp|Q9SFH9.1|HEM2_ARATH RecName: Full=Delta-aminolevulinic acid dehydratase, chloroplastic; Short=ALADH; AltName: Full=Porphobilinogen synthase; Flags: Precursor gi|11935205|gb|AAG42018.1|AF327428_1 putative aminolevulinate dehydratase [Arabidopsis thaliana] gi|12325198|gb|AAG52549.1|AC013289_16 putative aminolevulinate dehydratase; 38705-36189 [Arabidopsis thaliana] gi|13605645|gb|AAK32816.1|AF361803_1 At1g69740/T6C23_6 [Arabidopsis thaliana] gi|16323332|gb|AAL15379.1| At1g69740/T6C23_6 [Arabidopsis thaliana] gi|19698815|gb|AAL91143.1| putative aminolevulinate dehydratase [Arabidopsis thaliana] gi|21280939|gb|AAM44989.1| putative aminolevulinate dehydratase [Arabidopsis thaliana] gi|21539421|gb|AAM53263.1| putative aminolevulinate dehydratase [Arabidopsis thaliana] gi|22136066|gb|AAM91111.1| putative aminolevulinate dehydratase [Arabidopsis thaliana] gi|332196848|gb|AEE34969.1| delta-aminolevulinic acid dehydratase [Arabidopsis thaliana] gi|332196849|gb|AEE34970.1| delta-aminolevulinic acid dehydratase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449441790|ref|XP_004138665.1| PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225459583|ref|XP_002285863.1| PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic [Vitis vinifera] gi|147778245|emb|CAN65137.1| hypothetical protein VITISV_011727 [Vitis vinifera] gi|302141802|emb|CBI19005.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|13183730|gb|AAK15323.1|AF332195_1 aminolevulinate dehydratase [Raphanus sativus] Back     alignment and taxonomy information
>gi|1097877|prf||2114378A aminolevulinate dehydratase Back     alignment and taxonomy information
>gi|351721201|ref|NP_001238737.1| delta-aminolevulinic acid dehydratase, chloroplastic [Glycine max] gi|1170214|sp|P43210.1|HEM2_SOYBN RecName: Full=Delta-aminolevulinic acid dehydratase, chloroplastic; Short=ALADH; AltName: Full=Porphobilinogen synthase; Flags: Precursor gi|468000|gb|AAA18342.1| delta-aminolevulinic acid dehydratase [Glycine max] Back     alignment and taxonomy information
>gi|1170215|sp|P24493.2|HEM2_SPIOL RecName: Full=Delta-aminolevulinic acid dehydratase, chloroplastic; Short=ALAD; Short=ALADH; AltName: Full=Porphobilinogen synthase; Flags: Precursor gi|805062|emb|CAA40974.1| porphobilinogen synthase [Spinacia oleracea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query435
TAIR|locus:2205035430 HEMB1 [Arabidopsis thaliana (t 0.735 0.744 0.899 1.1e-170
TAIR|locus:2823624406 hemb2 [Arabidopsis thaliana (t 0.721 0.773 0.721 7e-128
TIGR_CMR|GSU_0135325 GSU_0135 "delta-aminolevulinic 0.712 0.953 0.493 3.4e-77
TIGR_CMR|BA_4694329 BA_4694 "delta-aminolevulinic 0.710 0.939 0.492 1.3e-75
TIGR_CMR|SPO_2076332 SPO_2076 "porphobilinogen synt 0.721 0.945 0.48 9.6e-73
TIGR_CMR|CHY_1210325 CHY_1210 "porphobilinogen synt 0.712 0.953 0.459 2.5e-72
UNIPROTKB|Q9KVN6347 VC_0105 "Delta-aminolevulinic 0.719 0.902 0.475 6.1e-71
TIGR_CMR|VC_0105347 VC_0105 "delta-aminolevulinic 0.719 0.902 0.475 6.1e-71
TIGR_CMR|SO_4208336 SO_4208 "delta-aminolevulinic 0.719 0.931 0.466 3e-69
UNIPROTKB|P0ACB2324 hemB [Escherichia coli K-12 (t 0.703 0.944 0.476 1.3e-68
TAIR|locus:2205035 HEMB1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1527 (542.6 bits), Expect = 1.1e-170, Sum P(2) = 1.1e-170
 Identities = 294/327 (89%), Positives = 310/327 (94%)

Query:   109 NRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARD 168
             NR SP  RA+FQET++SPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKAR 
Sbjct:   111 NRASPVTRAAFQETDISPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARA 170

Query:   169 VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDG 228
             VGVNS+VLFPKVP+ALK+ TGDEAYNDNGLVPRTI LLKD+YPDL+IYTDVALDPYSSDG
Sbjct:   171 VGVNSIVLFPKVPEALKNSTGDEAYNDNGLVPRTIRLLKDKYPDLIIYTDVALDPYSSDG 230

Query:   229 HDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHV 288
             HDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIR+ALDAEGFQ+V
Sbjct:   231 HDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRSALDAEGFQNV 290

Query:   289 SIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEGADILLF 348
             SIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREAL+EA+ DE+EGADILL 
Sbjct:   291 SIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALIEAREDEAEGADILL- 349

Query:   349 SVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLM 408
                   VKPGLPYLD+IRLLRDK PLPIAAYQVSGEYSMIKAGG LKMIDE++VMMESLM
Sbjct:   350 ------VKPGLPYLDIIRLLRDKSPLPIAAYQVSGEYSMIKAGGVLKMIDEEKVMMESLM 403

Query:   409 CLRRAGADIILTYFALQAARCLCGEKR 435
             CLRRAGADIILTYFALQAA CLCGEKR
Sbjct:   404 CLRRAGADIILTYFALQAATCLCGEKR 430
GO:0003824 "catalytic activity" evidence=IEA
GO:0004655 "porphobilinogen synthase activity" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0033014 "tetrapyrrole biosynthetic process" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006364 "rRNA processing" evidence=RCA
GO:0015995 "chlorophyll biosynthetic process" evidence=RCA
GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=TAS
TAIR|locus:2823624 hemb2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0135 GSU_0135 "delta-aminolevulinic acid dehydratase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4694 BA_4694 "delta-aminolevulinic acid dehydratase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2076 SPO_2076 "porphobilinogen synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1210 CHY_1210 "porphobilinogen synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KVN6 VC_0105 "Delta-aminolevulinic acid dehydratase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0105 VC_0105 "delta-aminolevulinic acid dehydratase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|SO_4208 SO_4208 "delta-aminolevulinic acid dehydratase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P0ACB2 hemB [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P30124HEM2_PEA4, ., 2, ., 1, ., 2, 40.87870.83670.9145N/Ano
Q42836HEM2_HORVU4, ., 2, ., 1, ., 2, 40.70430.97010.9859N/Ano
P45623HEM2_SELMA4, ., 2, ., 1, ., 2, 40.77110.82750.8633N/Ano
P43210HEM2_SOYBN4, ., 2, ., 1, ., 2, 40.79680.94020.9927yesno
P24493HEM2_SPIOL4, ., 2, ., 1, ., 2, 40.75960.97470.9792N/Ano
Q5Z8V9HEM2_ORYSJ4, ., 2, ., 1, ., 2, 40.71880.97470.9953yesno
Q8KCJ0HEM2_CHLTE4, ., 2, ., 1, ., 2, 40.52690.73100.9695yesno
Q59334HEM2_CHLP84, ., 2, ., 1, ., 2, 40.52100.73560.9756yesno
Q43058HEM2_PHYPA4, ., 2, ., 1, ., 2, 40.76020.82290.8325N/Ano
Q9SFH9HEM2_ARATH4, ., 2, ., 1, ., 2, 40.81270.98160.9930yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.10.998
4th Layer4.2.1.240.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query435
cd04823320 cd04823, ALAD_PBGS_aspartate_rich, Porphobilinogen 0.0
smart01004321 smart01004, ALAD, Delta-aminolevulinic acid dehydr 0.0
pfam00490322 pfam00490, ALAD, Delta-aminolevulinic acid dehydra 0.0
PRK09283323 PRK09283, PRK09283, delta-aminolevulinic acid dehy 0.0
COG0113330 COG0113, HemB, Delta-aminolevulinic acid dehydrata 0.0
cd00384314 cd00384, ALAD_PBGS, Porphobilinogen synthase (PBGS 1e-167
PRK13384322 PRK13384, PRK13384, delta-aminolevulinic acid dehy 1e-118
cd04824320 cd04824, eu_ALAD_PBGS_cysteine_rich, Porphobilinog 1e-100
>gnl|CDD|240127 cd04823, ALAD_PBGS_aspartate_rich, Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll Back     alignment and domain information 
 Score =  592 bits (1530), Expect = 0.0
 Identities = 194/329 (58%), Positives = 244/329 (74%), Gaps = 10/329 (3%)

Query: 104 RRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQE 162
            RPRRNR++ A+R   +ET LSP + + PLF+HEGE    PI +MPG +RL     L++E
Sbjct: 1   TRPRRNRRTDALRRLVRETTLSPDDLILPLFVHEGENQREPIPSMPGVFRLSIDE-LLKE 59

Query: 163 VAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALD 222
             +A D+G+ +V LFP  P  LKS  G EAYN + LV R I  +K+ +P+L I TDVALD
Sbjct: 60  AEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVALD 119

Query: 223 PYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDA 282
           PY+S GHDGIVR DG I+NDETV  LCKQA+ QA AGAD+V+PSDMMDGR+GAIR ALDA
Sbjct: 120 PYTSHGHDGIVR-DGGILNDETVEVLCKQALVQAEAGADIVAPSDMMDGRIGAIREALDA 178

Query: 283 EGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEG 342
           EGF +VSI+SY AKYAS+FYGPFR+AL S PR GDKKTYQM+PAN REAL E   D +EG
Sbjct: 179 EGFTNVSILSYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPANSREALREVALDIAEG 238

Query: 343 ADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRV 402
           AD+++       VKPG+PYLD+IR ++D++ +P  AYQVSGEY+M+KA      +DE +V
Sbjct: 239 ADMVM-------VKPGMPYLDIIRRVKDEFGVPTFAYQVSGEYAMLKAAAQNGWLDEDKV 291

Query: 403 MMESLMCLRRAGADIILTYFALQAARCLC 431
           M+ESL+  +RAGAD ILTYFA +AA  L 
Sbjct: 292 MLESLLAFKRAGADGILTYFAKEAAEWLR 320

This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesium binding sequence RX~164DX~65EXXXD and are activated by magnesium and/or potassium, but not by zinc. PBGSs_aspartate_rich are found in some bacterial species and photosynthetic organisms such as vascular plants, mosses and algae, but not in archaea. Length = 320
>gnl|CDD|214968 smart01004, ALAD, Delta-aminolevulinic acid dehydratase Back     alignment and domain information
>gnl|CDD|215945 pfam00490, ALAD, Delta-aminolevulinic acid dehydratase Back     alignment and domain information
>gnl|CDD|236450 PRK09283, PRK09283, delta-aminolevulinic acid dehydratase; Validated Back     alignment and domain information
>gnl|CDD|223191 COG0113, HemB, Delta-aminolevulinic acid dehydratase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|238226 cd00384, ALAD_PBGS, Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll Back     alignment and domain information
>gnl|CDD|172020 PRK13384, PRK13384, delta-aminolevulinic acid dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|240128 cd04824, eu_ALAD_PBGS_cysteine_rich, Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 435
COG0113330 HemB Delta-aminolevulinic acid dehydratase [Coenzy 100.0
cd04823320 ALAD_PBGS_aspartate_rich Porphobilinogen synthase 100.0
PF00490324 ALAD: Delta-aminolevulinic acid dehydratase; Inter 100.0
PRK09283323 delta-aminolevulinic acid dehydratase; Validated 100.0
cd00384314 ALAD_PBGS Porphobilinogen synthase (PBGS), which i 100.0
PRK13384322 delta-aminolevulinic acid dehydratase; Provisional 100.0
cd04824320 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthas 100.0
KOG2794340 consensus Delta-aminolevulinic acid dehydratase [C 100.0
TIGR03128206 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the 96.9
PRK07028 430 bifunctional hexulose-6-phosphate synthase/ribonuc 96.77
cd08210364 RLP_RrRLP Ribulose bisphosphate carboxylase like p 96.43
cd00377243 ICL_PEPM Members of the ICL/PEPM enzyme family cat 96.34
cd06556240 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup 96.28
cd08205367 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l 96.27
cd00945201 Aldolase_Class_I Class I aldolases. The class I al 95.86
cd04726202 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl 95.3
cd00945201 Aldolase_Class_I Class I aldolases. The class I al 95.11
PLN02489335 homocysteine S-methyltransferase 95.11
cd00452190 KDPG_aldolase KDPG and KHG aldolase. This family b 95.03
PRK08645 612 bifunctional homocysteine S-methyltransferase/5,10 94.9
PRK05718212 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 94.51
PRK13307391 bifunctional formaldehyde-activating enzyme/3-hexu 94.24
cd04729219 NanE N-acetylmannosamine-6-phosphate epimerase (Na 93.87
cd02803327 OYE_like_FMN_family Old yellow enzyme (OYE)-like F 93.62
PRK07807479 inosine 5-monophosphate dehydrogenase; Validated 93.09
cd04727283 pdxS PdxS is a subunit of the pyridoxal 5'-phospha 93.02
PRK14040 593 oxaloacetate decarboxylase; Provisional 92.62
PF03437254 BtpA: BtpA family; InterPro: IPR005137 Photosystem 92.47
TIGR00259257 thylakoid_BtpA membrane complex biogenesis protein 92.37
PRK09485304 mmuM homocysteine methyltransferase; Provisional 91.9
PF02574305 S-methyl_trans: Homocysteine S-methyltransferase; 91.7
PRK15063428 isocitrate lyase; Provisional 91.67
PRK04147 293 N-acetylneuraminate lyase; Provisional 91.48
PRK01130221 N-acetylmannosamine-6-phosphate 2-epimerase; Provi 91.39
TIGR00343287 pyridoxal 5'-phosphate synthase, synthase subunit 91.26
PTZ00170228 D-ribulose-5-phosphate 3-epimerase; Provisional 91.02
PRK07534336 methionine synthase I; Validated 90.53
TIGR02319294 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos 90.53
PRK11320292 prpB 2-methylisocitrate lyase; Provisional 90.31
TIGR01949258 AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep 90.18
PRK00311264 panB 3-methyl-2-oxobutanoate hydroxymethyltransfer 90.07
PRK00043212 thiE thiamine-phosphate pyrophosphorylase; Reviewe 90.03
PRK07188352 nicotinate phosphoribosyltransferase; Provisional 89.81
PRK11613 282 folP dihydropteroate synthase; Provisional 89.61
TIGR00262256 trpA tryptophan synthase, alpha subunit. Tryptopha 89.56
PRK07226267 fructose-bisphosphate aldolase; Provisional 89.54
cd06557254 KPHMT-like Ketopantoate hydroxymethyltransferase ( 89.54
cd08601256 GDPD_SaGlpQ_like Glycerophosphodiester phosphodies 88.77
cd00739 257 DHPS DHPS subgroup of Pterin binding enzymes. DHPS 88.71
cd00408281 DHDPS-like Dihydrodipicolinate synthase family. A 88.69
PF04131192 NanE: Putative N-acetylmannosamine-6-phosphate epi 88.66
cd00954288 NAL N-Acetylneuraminic acid aldolase, also called 88.52
PRK07259301 dihydroorotate dehydrogenase 1B; Reviewed 88.36
PRK08444353 hypothetical protein; Provisional 87.93
PRK00311264 panB 3-methyl-2-oxobutanoate hydroxymethyltransfer 87.93
TIGR03572232 WbuZ glycosyl amidation-associated protein WbuZ. T 87.83
cd00958235 DhnA Class I fructose-1,6-bisphosphate (FBP) aldol 87.64
cd06557254 KPHMT-like Ketopantoate hydroxymethyltransferase ( 87.52
cd04740296 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c 87.26
PRK12331 448 oxaloacetate decarboxylase; Provisional 86.7
TIGR03249 296 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh 86.52
PRK04180293 pyridoxal biosynthesis lyase PdxS; Provisional 86.21
PRK14041 467 oxaloacetate decarboxylase; Provisional 86.1
cd00950284 DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke 85.98
PRK07565 334 dihydroorotate dehydrogenase 2; Reviewed 85.98
TIGR00674285 dapA dihydrodipicolinate synthase. Dihydrodipicoli 85.81
PRK14042 596 pyruvate carboxylase subunit B; Provisional 85.49
cd02930353 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin 85.44
COG1060370 ThiH Thiamine biosynthesis enzyme ThiH and related 85.25
PF02581180 TMP-TENI: Thiamine monophosphate synthase/TENI; In 84.94
cd04733338 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN 84.93
TIGR03551 343 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav 84.74
cd00377243 ICL_PEPM Members of the ICL/PEPM enzyme family cat 84.73
TIGR03551343 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav 84.71
PRK07695201 transcriptional regulator TenI; Provisional 84.64
TIGR02082 1178 metH 5-methyltetrahydrofolate--homocysteine methyl 84.32
PRK12344 524 putative alpha-isopropylmalate/homocitrate synthas 84.18
TIGR02317285 prpB methylisocitrate lyase. Members of this famil 84.11
PRK12999 1146 pyruvate carboxylase; Reviewed 84.01
PRK05927350 hypothetical protein; Provisional 83.86
TIGR00222263 panB 3-methyl-2-oxobutanoate hydroxymethyltransfer 83.75
TIGR01163210 rpe ribulose-phosphate 3-epimerase. This family co 83.55
cd04732234 HisA HisA. Phosphoribosylformimino-5-aminoimidazol 83.44
PRK09613469 thiH thiamine biosynthesis protein ThiH; Reviewed 82.68
TIGR01303475 IMP_DH_rel_1 IMP dehydrogenase family protein. Thi 82.17
cd00429211 RPE Ribulose-5-phosphate 3-epimerase (RPE). This e 81.94
cd02933338 OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind 81.49
PRK00865261 glutamate racemase; Provisional 81.41
TIGR02320285 PEP_mutase phosphoenolpyruvate phosphomutase. A cl 81.25
TIGR00875213 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/ 81.07
PF01177216 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro 81.0
PRK09490 1229 metH B12-dependent methionine synthase; Provisiona 80.8
PF13714238 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB 80.64
PRK09282 592 pyruvate carboxylase subunit B; Validated 80.45
cd00564196 TMP_TenI Thiamine monophosphate synthase (TMP synt 80.44
PRK06512221 thiamine-phosphate pyrophosphorylase; Provisional 80.29
PRK12331448 oxaloacetate decarboxylase; Provisional 80.1
TIGR03332407 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosp 80.07
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism] Back     alignment and domain information 
Probab=100.00  E-value=6.9e-155  Score=1131.68  Aligned_cols=325  Identities=55%  Similarity=0.906  Sum_probs=317.8

Q ss_pred             CCCCCCCCCCCCChHHHhhhhcCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEee
Q 013861          100 LPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFP  178 (435)
Q Consensus       100 l~~~~R~RRlR~~~~~R~l~~Et~L~~~~LI~PlFV~eg~~-~~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFg  178 (435)
                      +.+.+|+||+|+|+++|+|++||+|+++||||||||.||++ ++||+|||||||||++ .|++++++++++||++|+|||
T Consensus         4 ~~~~~R~RRlRk~~~~R~lv~Et~L~~~dLI~PiFV~eg~~~~~~I~SMPgv~r~s~d-~l~~~~~~~~~lGi~av~LFg   82 (330)
T COG0113           4 TFPFRRPRRLRKSPALRRLVRETRLTPNDLIYPIFVVEGENIKEEIPSMPGVYRYSLD-RLVEEAEELVDLGIPAVILFG   82 (330)
T ss_pred             cchhhhhhhccCCHHHHHHHHhcCCCHHHeeEeEEEecCCCCccccCCCCCceeccHH-HHHHHHHHHHhcCCCEEEEeC
Confidence            34578999999999999999999999999999999999986 7899999999999997 699999999999999999999


Q ss_pred             cCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHc
Q 013861          179 KVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARA  258 (435)
Q Consensus       179 vi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~A  258 (435)
                      +++++.||++||+|||+||+||||+|.||+.||||+|||||||||||+||||||++++|+|+||+||++|+||||+||+|
T Consensus        83 vp~~~~Kd~~gs~A~~~~givqravr~ik~~~p~l~iitDvcLceyT~HGHcGil~~~~~V~ND~Tle~l~k~Avs~AeA  162 (330)
T COG0113          83 VPDDSKKDETGSEAYDPDGIVQRAVRAIKEAFPELVVITDVCLCEYTDHGHCGILDDGGYVDNDETLEILAKQAVSQAEA  162 (330)
T ss_pred             CCcccccCcccccccCCCChHHHHHHHHHHhCCCeEEEeeecccCCcCCCccccccCCCeecchHHHHHHHHHHHHHHHc
Confidence            86567899999999999999999999999999999999999999999999999998777999999999999999999999


Q ss_pred             CCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhc
Q 013861          259 GADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQAD  338 (435)
Q Consensus       259 GADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D  338 (435)
                      |||||||||||||||++||++||++||+||+|||||+||||+||||||||++|+|+|||||||||||+|++|||||+++|
T Consensus       163 GAdivAPSdMMDGrV~aIR~aLd~ag~~~v~IMsYsaKyASafYGPFRdAa~Sap~~gdrktYQmDpaN~~EAlrE~~lD  242 (330)
T COG0113         163 GADIVAPSDMMDGRVGAIREALDEAGFIDVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREIELD  242 (330)
T ss_pred             CCCeecccccccchHHHHHHHHHHcCCCcceeeehhHHHhhhccccHHHHhhcccccCCcceeccCCcCHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEe
Q 013861          339 ESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADII  418 (435)
Q Consensus       339 ~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~I  418 (435)
                      ++|||||||       ||||++|||||+++|++|++|++||||||||||||||+++||||++++++|||++|||||||+|
T Consensus       243 ~~EGAD~lM-------VKPal~YLDIi~~vk~~~~lP~~AYqVSGEYaMikAAa~nGwide~~~vlEsL~~~kRAGAd~I  315 (330)
T COG0113         243 IEEGADILM-------VKPALPYLDIIRRVKEEFNLPVAAYQVSGEYAMIKAAAQNGWIDEEKVVLESLTSIKRAGADLI  315 (330)
T ss_pred             HhcCCcEEE-------EcCCchHHHHHHHHHHhcCCCeEEEecchHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCEE
Confidence            999999999       9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ehhcHHHHHHHHhc
Q 013861          419 LTYFALQAARCLCG  432 (435)
Q Consensus       419 iTYfA~~~a~~L~~  432 (435)
                      |||||+|+|+||++
T Consensus       316 iTYfA~e~a~~L~~  329 (330)
T COG0113         316 ITYFAKEVAEWLKE  329 (330)
T ss_pred             EeecHHHHHHHhhc
Confidence            99999999999975

>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll Back     alignment and domain information
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway [] Back     alignment and domain information
>PRK09283 delta-aminolevulinic acid dehydratase; Validated Back     alignment and domain information
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll Back     alignment and domain information
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional Back     alignment and domain information
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll Back     alignment and domain information
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism] Back     alignment and domain information
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase Back     alignment and domain information
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated Back     alignment and domain information
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R Back     alignment and domain information
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage Back     alignment and domain information
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds Back     alignment and domain information
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV Back     alignment and domain information
>cd00945 Aldolase_Class_I Class I aldolases Back     alignment and domain information
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) Back     alignment and domain information
>cd00945 Aldolase_Class_I Class I aldolases Back     alignment and domain information
>PLN02489 homocysteine S-methyltransferase Back     alignment and domain information
>cd00452 KDPG_aldolase KDPG and KHG aldolase Back     alignment and domain information
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed Back     alignment and domain information
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional Back     alignment and domain information
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate Back     alignment and domain information
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain Back     alignment and domain information
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa Back     alignment and domain information
>PRK14040 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane Back     alignment and domain information
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family Back     alignment and domain information
>PRK09485 mmuM homocysteine methyltransferase; Provisional Back     alignment and domain information
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2 Back     alignment and domain information
>PRK15063 isocitrate lyase; Provisional Back     alignment and domain information
>PRK04147 N-acetylneuraminate lyase; Provisional Back     alignment and domain information
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional Back     alignment and domain information
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 Back     alignment and domain information
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional Back     alignment and domain information
>PRK07534 methionine synthase I; Validated Back     alignment and domain information
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase Back     alignment and domain information
>PRK11320 prpB 2-methylisocitrate lyase; Provisional Back     alignment and domain information
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase Back     alignment and domain information
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed Back     alignment and domain information
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed Back     alignment and domain information
>PRK07188 nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK11613 folP dihydropteroate synthase; Provisional Back     alignment and domain information
>TIGR00262 trpA tryptophan synthase, alpha subunit Back     alignment and domain information
>PRK07226 fructose-bisphosphate aldolase; Provisional Back     alignment and domain information
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway Back     alignment and domain information
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins Back     alignment and domain information
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes Back     alignment and domain information
>cd00408 DHDPS-like Dihydrodipicolinate synthase family Back     alignment and domain information
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [] Back     alignment and domain information
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) Back     alignment and domain information
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed Back     alignment and domain information
>PRK08444 hypothetical protein; Provisional Back     alignment and domain information
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed Back     alignment and domain information
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ Back     alignment and domain information
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea Back     alignment and domain information
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway Back     alignment and domain information
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain Back     alignment and domain information
>PRK12331 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase Back     alignment and domain information
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional Back     alignment and domain information
>PRK14041 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis Back     alignment and domain information
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>TIGR00674 dapA dihydrodipicolinate synthase Back     alignment and domain information
>PRK14042 pyruvate carboxylase subunit B; Provisional Back     alignment and domain information
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain Back     alignment and domain information
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] Back     alignment and domain information
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 Back     alignment and domain information
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 Back     alignment and domain information
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit Back     alignment and domain information
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage Back     alignment and domain information
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit Back     alignment and domain information
>PRK07695 transcriptional regulator TenI; Provisional Back     alignment and domain information
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase Back     alignment and domain information
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional Back     alignment and domain information
>TIGR02317 prpB methylisocitrate lyase Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>PRK05927 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase Back     alignment and domain information
>TIGR01163 rpe ribulose-phosphate 3-epimerase Back     alignment and domain information
>cd04732 HisA HisA Back     alignment and domain information
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed Back     alignment and domain information
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein Back     alignment and domain information
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) Back     alignment and domain information
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain Back     alignment and domain information
>PRK00865 glutamate racemase; Provisional Back     alignment and domain information
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase Back     alignment and domain information
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family Back     alignment and domain information
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase Back     alignment and domain information
>PRK09490 metH B12-dependent methionine synthase; Provisional Back     alignment and domain information
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B Back     alignment and domain information
>PRK09282 pyruvate carboxylase subunit B; Validated Back     alignment and domain information
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI Back     alignment and domain information
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional Back     alignment and domain information
>PRK12331 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query435
3obk_A356 Crystal Structure Of Delta-Aminolevulinic Acid Dehy 4e-90
1w1z_A328 Structure Of The Plant Like 5-Amino Laevulinic Acid 4e-87
1b4e_A323 X-Ray Structure Of 5-Aminolevulinic Acid Dehydratas 2e-72
1b4k_A337 High Resolution Crystal Structure Of A Mg2-Dependen 2e-72
1l6s_A323 Crystal Structure Of Porphobilinogen Synthase Compl 5e-72
1i8j_A323 Crystal Structure Of Porphobilinogen Synthase Compl 7e-72
1gzg_A337 Complex Of A Mg2-Dependent Porphobilinogen Synthase 8e-72
2c15_A337 5-(4-Carboxy-2-Oxo-Butoxy)-4-Oxo-Pentanoic Acid Aci 1e-71
1w54_A337 Stepwise Introduction Of A Zinc Binding Site Into P 4e-71
1w56_A337 Stepwise Introduction Of Zinc Binding Site Into Por 2e-70
1w5m_A337 Stepwise Introduction Of Zinc Binding Site Into Por 2e-70
1w5n_A337 Stepwise Introduction Of Zinc Binding Site Into Por 7e-70
1w5o_A337 Stepwise Introduction Of Zinc Binding Site Into Por 2e-69
1w5p_A337 Stepwise Introduction Of Zinc Binding Site Into Por 2e-68
1w5q_A337 Stepwise Introduction Of Zinc Binding Site Into Por 5e-68
2c14_A337 5-(4-Carboxy-2-Oxo-Butylamino)-4-Oxo-Pentanoic Acid 3e-66
2c13_A337 5-Hydroxy-Levulinic Acid Bound To Porphobilinogen S 2e-65
2z1b_A330 Crystal Structure Of 5-Aminolevulinic Acid Dehydrat 7e-63
1pv8_A330 Crystal Structure Of A Low Activity F12l Mutant Of 9e-61
1e51_A330 Crystal Structure Of Native Human Erythrocyte 5- Am 1e-60
2z0i_A330 Crystal Structure Of 5-Aminolevulinic Acid Dehydrat 1e-58
1ylv_A342 Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid 5e-48
1eb3_A340 Yeast 5-Aminolaevulinic Acid Dehydratase 4,7-Dioxos 2e-47
1qnv_A342 Yeast 5-Aminolaevulinic Acid Dehydratase Lead (Pb) 2e-47
1h7o_A341 Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid 2e-47
1aw5_A340 5-Aminolevulinate Dehydratase From Saccharomyces Ce 2e-45
>pdb|3OBK|A Chain A, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase (Porphobilinogen Synthase) From Toxoplasma Gondii Me49 In Complex With The Reaction Product Porphobilinogen Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  328 bits (840), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 179/329 (54%), Positives = 235/329 (71%), Gaps = 10/329 (3%)
Query: 109 NRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARD 168
           NRK+ A+R   QE  + P++ +YPLF+H+ E   PI +MPG  RL     L++EV +AR 
Sbjct: 26  NRKNRAVRQLVQENLVKPSSLIYPLFVHDEETSVPIPSMPGQSRLSM-EDLLKEVGEARS 84
Query: 169 VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDG 228
            G+ + +LFPKV D LKS   +E+YN +GL+PR I  LK+ +PD+++  DVALDPYSS G
Sbjct: 85  YGIKAFMLFPKVDDELKSVMAEESYNPDGLLPRAIMALKEAFPDVLLLADVALDPYSSMG 144
Query: 229 HDGIVRED-GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQH 287
           HDG+V E  G I+ND TVHQLCKQA++ ARAGAD+V PSDMMDGRV AIR +LD EG   
Sbjct: 145 HDGVVDEQSGKIVNDLTVHQLCKQAITLARAGADMVCPSDMMDGRVSAIRESLDMEGCTD 204
Query: 288 VSIMSYTAKYASSFYGPFREALDSNPRFG-DKKTYQMNPANYREALVEAQADESEGADIL 346
            SI++Y+ KYASSFYGPFR+ALDS+   G DKKTYQM+P+N REA  EA+AD SEGAD+L
Sbjct: 205 TSILAYSCKYASSFYGPFRDALDSHMVGGTDKKTYQMDPSNSREAEREAEADASEGADML 264
Query: 347 LFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMES 406
           +       VKPGLPYLDV+  +R+K  LP+ AY VSGEY+M+KA      I E+  ++E 
Sbjct: 265 M-------VKPGLPYLDVLAKIREKSKLPMVAYHVSGEYAMLKAAAEKGYISEKDTVLEV 317
Query: 407 LMCLRRAGADIILTYFALQAARCLCGEKR 435
           L   RRAGAD + TY+A +AA+ +  + +
Sbjct: 318 LKSFRRAGADAVATYYAKEAAKWMVEDMK 346
>pdb|1W1Z|A Chain A, Structure Of The Plant Like 5-Amino Laevulinic Acid Dehydratase From Chlorobium Vibrioforme Length = 328 Back     alignment and structure
>pdb|1B4E|A Chain A, X-Ray Structure Of 5-Aminolevulinic Acid Dehydratase Complexed With The Inhibitor Levulinic Acid Length = 323 Back     alignment and structure
>pdb|1B4K|A Chain A, High Resolution Crystal Structure Of A Mg2-Dependent 5-Aminolevulinic Acid Dehydratase Length = 337 Back     alignment and structure
>pdb|1L6S|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed With The Inhibitor 4,7-Dioxosebacic Acid Length = 323 Back     alignment and structure
>pdb|1I8J|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed With The Inhibitor 4,7-Dioxosebacic Acid Length = 323 Back     alignment and structure
>pdb|1GZG|A Chain A, Complex Of A Mg2-Dependent Porphobilinogen Synthase From Pseudomonas Aeruginosa (Mutant D139n) With 5-Fluorolevulinic Acid Length = 337 Back     alignment and structure
>pdb|2C15|A Chain A, 5-(4-Carboxy-2-Oxo-Butoxy)-4-Oxo-Pentanoic Acid Acid Bound To Porphobilinogen Synthase From Pseudomonas Aeruginosa Length = 337 Back     alignment and structure
>pdb|1W54|A Chain A, Stepwise Introduction Of A Zinc Binding Site Into Porphobilinogen Synthase From Pseudomonas Aeruginosa (mutation D139c) Length = 337 Back     alignment and structure
>pdb|1W56|A Chain A, Stepwise Introduction Of Zinc Binding Site Into Porphobilinogen Synthase Of Pseudomonas Aeruginosa (Mutations A129c And D131c) Length = 337 Back     alignment and structure
>pdb|1W5M|A Chain A, Stepwise Introduction Of Zinc Binding Site Into Porphobilinogen Synthase Of Pseudomonas Aeruginosa (Mutations A129c And D139c) Length = 337 Back     alignment and structure
>pdb|1W5N|A Chain A, Stepwise Introduction Of Zinc Binding Site Into Porphobilinogen Synthase Of Pseudomonas Aeruginosa (Mutations D131c And D139c) Length = 337 Back     alignment and structure
>pdb|1W5O|A Chain A, Stepwise Introduction Of Zinc Binding Site Into Porphobilinogen Synthase Of Pseudomonas Aeruginosa (Mutations A129c, D131c And D139c) Length = 337 Back     alignment and structure
>pdb|1W5P|A Chain A, Stepwise Introduction Of Zinc Binding Site Into Porphobilinogen Synthase Of Pseudomonas Aeruginosa (Mutations A129c, D131c, D139c, P132e) Length = 337 Back     alignment and structure
>pdb|1W5Q|A Chain A, Stepwise Introduction Of Zinc Binding Site Into Porphobilinogen Synthase Of Pseudomonas Aeruginosa (Mutations A129c, D131c, D139c, P132e, K229r) Length = 337 Back     alignment and structure
>pdb|2C14|A Chain A, 5-(4-Carboxy-2-Oxo-Butylamino)-4-Oxo-Pentanoic Acid Acid Bound To Porphobilinogen Synthase From Pseudomonas Aeruginosa Length = 337 Back     alignment and structure
>pdb|2C13|A Chain A, 5-Hydroxy-Levulinic Acid Bound To Porphobilinogen Synthase From Pseudomonas Aeruginosa Length = 337 Back     alignment and structure
>pdb|2Z1B|A Chain A, Crystal Structure Of 5-Aminolevulinic Acid Dehydratase (Alad) From Mus Musculs Length = 330 Back     alignment and structure
>pdb|1PV8|A Chain A, Crystal Structure Of A Low Activity F12l Mutant Of Human Porphobilinogen Synthase Length = 330 Back     alignment and structure
>pdb|1E51|A Chain A, Crystal Structure Of Native Human Erythrocyte 5- Aminolaevulinic Acid Dehydratase Length = 330 Back     alignment and structure
>pdb|2Z0I|A Chain A, Crystal Structure Of 5-Aminolevulinic Acid Dehydratase (Alad) From Mus Musculus Length = 330 Back     alignment and structure
>pdb|1YLV|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid Dehydratase With Laevulinic Acid Length = 342 Back     alignment and structure
>pdb|1EB3|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratase 4,7-Dioxosebacic Acid Complex Length = 340 Back     alignment and structure
>pdb|1QNV|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratase Lead (Pb) Complex Length = 342 Back     alignment and structure
>pdb|1H7O|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid Dehydratase With 5-Aminolaevulinic Acid At 1.7 A Resolution Length = 341 Back     alignment and structure
>pdb|1AW5|A Chain A, 5-Aminolevulinate Dehydratase From Saccharomyces Cerevisiae Length = 340 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query435
3obk_A356 Delta-aminolevulinic acid dehydratase; ssgcid, str 0.0
1w1z_A328 Delta-aminolevulinic acid dehydratase; synthase, t 0.0
1w5q_A337 Delta-aminolevulinic acid dehydratase; synthase, e 0.0
1l6s_A323 Porphobilinogen synthase; dehydratase, lyase; HET: 0.0
1pv8_A330 Delta-aminolevulinic acid dehydratase; porphobilin 0.0
1h7n_A342 5-aminolaevulinic acid dehydratase; lyase, aldolas 1e-180
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49} Length = 356 Back     alignment and structure
 Score =  578 bits (1492), Expect = 0.0
 Identities = 185/354 (52%), Positives = 245/354 (69%), Gaps = 10/354 (2%)

Query: 84  VPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTP 143
           + P+            LP+  RPRRNRK+ A+R   QE  + P++ +YPLF+H+ E   P
Sbjct: 1   MTPRGPLDNNNYGEVWLPIQARPRRNRKNRAVRQLVQENLVKPSSLIYPLFVHDEETSVP 60

Query: 144 IGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTI 203
           I +MPG  RL     L++EV +AR  G+ + +LFPKV D LKS   +E+YN +GL+PR I
Sbjct: 61  IPSMPGQSRLSMED-LLKEVGEARSYGIKAFMLFPKVDDELKSVMAEESYNPDGLLPRAI 119

Query: 204 WLLKDRYPDLVIYTDVALDPYSSDGHDGIVR-EDGVIMNDETVHQLCKQAVSQARAGADV 262
             LK+ +PD+++  DVALDPYSS GHDG+V  + G I+ND TVHQLCKQA++ ARAGAD+
Sbjct: 120 MALKEAFPDVLLLADVALDPYSSMGHDGVVDEQSGKIVNDLTVHQLCKQAITLARAGADM 179

Query: 263 VSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG-DKKTY 321
           V PSDMMDGRV AIR +LD EG    SI++Y+ KYASSFYGPFR+ALDS+   G DKKTY
Sbjct: 180 VCPSDMMDGRVSAIRESLDMEGCTDTSILAYSCKYASSFYGPFRDALDSHMVGGTDKKTY 239

Query: 322 QMNPANYREALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQV 381
           QM+P+N REA  EA+AD SEGAD+L+       VKPGLPYLDV+  +R+K  LP+ AY V
Sbjct: 240 QMDPSNSREAEREAEADASEGADMLM-------VKPGLPYLDVLAKIREKSKLPMVAYHV 292

Query: 382 SGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLCGEKR 435
           SGEY+M+KA      I E+  ++E L   RRAGAD + TY+A +AA+ +  + +
Sbjct: 293 SGEYAMLKAAAEKGYISEKDTVLEVLKSFRRAGADAVATYYAKEAAKWMVEDMK 346
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A* Length = 328 Back     alignment and structure
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A* Length = 337 Back     alignment and structure
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A Length = 323 Back     alignment and structure
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A Length = 330 Back     alignment and structure
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A Length = 342 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query435
1w5q_A337 Delta-aminolevulinic acid dehydratase; synthase, e 100.0
1w1z_A328 Delta-aminolevulinic acid dehydratase; synthase, t 100.0
3obk_A356 Delta-aminolevulinic acid dehydratase; ssgcid, str 100.0
1l6s_A323 Porphobilinogen synthase; dehydratase, lyase; HET: 100.0
1h7n_A342 5-aminolaevulinic acid dehydratase; lyase, aldolas 100.0
1pv8_A330 Delta-aminolevulinic acid dehydratase; porphobilin 100.0
3ajx_A207 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf 96.5
1rd5_A262 Tryptophan synthase alpha chain, chloroplast; hydr 96.48
1qop_A268 Tryptophan synthase alpha chain; lyase, carbon-oxy 96.36
1vhc_A224 Putative KHG/KDPG aldolase; structural genomics, u 95.64
3nav_A271 Tryptophan synthase alpha chain; alpha subunit, st 95.6
1y0e_A223 Putative N-acetylmannosamine-6-phosphate 2-epimer; 95.55
1wbh_A214 KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} 95.43
1mxs_A225 KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a 95.18
3vnd_A267 TSA, tryptophan synthase alpha chain; psychrophili 94.75
2ekc_A262 AQ_1548, tryptophan synthase alpha chain; structur 94.74
3f4w_A211 Putative hexulose 6 phosphate synthase; humps, mal 94.61
1wa3_A205 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, 94.53
3eol_A433 Isocitrate lyase; seattle structural center for in 94.32
2yw3_A207 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox 93.97
4e38_A232 Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho 93.32
3lg3_A435 Isocitrate lyase; conserved, CD, proteomics eviden 93.23
3lye_A307 Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre 92.57
1zlp_A318 PSR132, petal death protein; TIM-barrel, helix swa 92.1
3igs_A232 N-acetylmannosamine-6-phosphate 2-epimerase 2; ene 91.97
3q58_A229 N-acetylmannosamine-6-phosphate 2-epimerase; TIM b 91.93
1geq_A248 Tryptophan synthase alpha-subunit; hyperthermophIl 91.72
1vzw_A 244 Phosphoribosyl isomerase A; histidine biosynthesis 91.54
3fa4_A302 2,3-dimethylmalate lyase; alpha/beta barrel, helix 91.38
1f8m_A429 Isocitrate lyase, ICL; alpha-beta barrel, helix-sw 91.32
2w6r_A266 Imidazole glycerol phosphate synthase subunit HISF 91.26
2qiw_A255 PEP phosphonomutase; structural genomics, joint ce 91.19
1o66_A275 3-methyl-2-oxobutanoate hydroxymethyltransferase; 91.04
2ze3_A275 DFA0005; organic waste LEFT-OVER decomposition, al 90.8
3i4e_A439 Isocitrate lyase; structural genomics, seattle str 90.68
1to3_A304 Putative aldolase YIHT; beta-alpha barrel, structu 90.21
2yzr_A330 Pyridoxal biosynthesis lyase PDXS; redox protein, 90.14
1s2w_A295 Phosphoenolpyruvate phosphomutase; phosphonopyruva 89.53
1lt8_A406 Betaine-homocysteine methyltransferase; homocystei 89.51
1kbi_A 511 Cytochrome B2, L-LCR; flavocytochrome B2, electron 89.27
2hjp_A290 Phosphonopyruvate hydrolase; phosporus-Ca cleavage 88.65
3lab_A217 Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) 88.35
2v82_A212 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l 88.32
1vzw_A244 Phosphoribosyl isomerase A; histidine biosynthesis 88.2
1ujp_A271 Tryptophan synthase alpha chain; riken structural 88.07
3na8_A 315 Putative dihydrodipicolinate synthetase; lyase; HE 88.05
3si9_A 315 DHDPS, dihydrodipicolinate synthase; structural ge 87.7
3eoo_A298 Methylisocitrate lyase; seattle structural genomic 86.76
3tr9_A 314 Dihydropteroate synthase; biosynthesis of cofactor 86.7
3tak_A 291 DHDPS, dihydrodipicolinate synthase; TIM barrel, l 86.62
3s1x_A223 Probable transaldolase; alpha-beta barrel, conform 86.45
1q7z_A 566 5-methyltetrahydrofolate S-homocysteine methyltran 86.42
3cpr_A304 Dihydrodipicolinate synthetase; (beta/alpha)8-barr 86.28
3flu_A 297 DHDPS, dihydrodipicolinate synthase; TIM barrel, b 86.23
2v9d_A 343 YAGE; dihydrodipicolinic acid synthase, N-acetyl n 85.92
2y88_A 244 Phosphoribosyl isomerase A; aromatic amino acid bi 85.82
3l21_A 304 DHDPS, dihydrodipicolinate synthase; DAPA, dimer, 85.43
1xg4_A295 Probable methylisocitrate lyase; 2-methylisocitrat 85.15
1oy0_A281 Ketopantoate hydroxymethyltransferase; domain swap 84.94
2y88_A244 Phosphoribosyl isomerase A; aromatic amino acid bi 84.88
3ih1_A305 Methylisocitrate lyase; alpha-beta structure, TIM- 84.61
1yxy_A234 Putative N-acetylmannosamine-6-phosphate 2-epimer; 84.32
1m3u_A264 3-methyl-2-oxobutanoate hydroxymethyltransferase; 84.11
1o66_A275 3-methyl-2-oxobutanoate hydroxymethyltransferase; 83.76
1thf_D 253 HISF protein; thermophIle, TIM-barrel, histidine b 83.41
2dgd_A223 223AA long hypothetical arylmalonate decarboxylas; 82.92
2wkj_A 303 N-acetylneuraminate lyase; directed evolution, sia 82.81
3r8r_A212 Transaldolase; pentose phosphate pathway, schiff b 82.79
1oy0_A281 Ketopantoate hydroxymethyltransferase; domain swap 82.63
3b8i_A287 PA4872 oxaloacetate decarboxylase; alpha/beta barr 82.48
3bg3_A 718 Pyruvate carboxylase, mitochondrial; TIM barrel, A 82.17
3ovp_A228 Ribulose-phosphate 3-epimerase; iron binding, isom 82.1
3vav_A275 3-methyl-2-oxobutanoate hydroxymethyltransferase; 82.01
2vp8_A 318 Dihydropteroate synthase 2; RV1207 transferase, fo 82.0
3jr2_A218 Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon 81.8
1q7z_A 566 5-methyltetrahydrofolate S-homocysteine methyltran 81.78
3eul_A152 Possible nitrate/nitrite response transcriptional 81.63
3ctl_A 231 D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p 81.4
3ih1_A305 Methylisocitrate lyase; alpha-beta structure, TIM- 81.28
1ujp_A 271 Tryptophan synthase alpha chain; riken structural 81.1
1yad_A221 Regulatory protein TENI; TIM barrel, transcription 80.71
3vav_A275 3-methyl-2-oxobutanoate hydroxymethyltransferase; 80.2
1vqt_A213 Orotidine 5'-phosphate decarboxylase; TM0332, stru 80.2
1f76_A336 Dihydroorotate dehydrogenase; monomer, alpha-beta- 80.06
1h1y_A228 D-ribulose-5-phosphate 3-epimerase; oxidative pent 80.01
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A* Back     alignment and structure
Probab=100.00  E-value=9.5e-158  Score=1159.62  Aligned_cols=331  Identities=44%  Similarity=0.739  Sum_probs=313.6

Q ss_pred             CCCCcccCCCCCCCCCCCCCChHHHhhhhcCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcC
Q 013861           92 AGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVG  170 (435)
Q Consensus        92 ~g~p~~~~l~~~~R~RRlR~~~~~R~l~~Et~L~~~~LI~PlFV~eg~~-~~~I~sMPGv~r~s~~~~l~~~v~~~~~~G  170 (435)
                      .|||...|++. +||||||+|+++|+|++||+|+++||||||||+||++ ++||+|||||||||++ .|++++++++++|
T Consensus         2 ~~tp~~~~~p~-~R~RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid-~l~~~~~~~~~lG   79 (337)
T 1w5q_A            2 SFTPANRAYPY-TRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSID-QLLIEAEEWVALG   79 (337)
T ss_dssp             ----CCCCTTT-CCTTTTTSSHHHHHHHCCCCCCGGGEEEEEEEESSSSCEEECTTSTTCEEEEHH-HHHHHHHHHHHTT
T ss_pred             CCCccCCCCCC-CCCCcCCCChHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHH-HHHHHHHHHHHCC
Confidence            58999999996 7999999999999999999999999999999999996 6899999999999997 6999999999999


Q ss_pred             CCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHH
Q 013861          171 VNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCK  250 (435)
Q Consensus       171 I~sv~LFgvi~~~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak  250 (435)
                      |++|+|||++|+.+||+.||+|||+||++|||||.||++||||+|||||||||||+||||||++++|+|+||+||++|++
T Consensus        80 i~~v~LFgv~~~~~KD~~gs~A~~~~g~v~rair~iK~~~pdl~vitDvcLc~YT~HGHcGil~~~g~V~ND~Tl~~L~k  159 (337)
T 1w5q_A           80 IPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVCLCEFTTHGQCGILDDDGYVLNDVSIDVLVR  159 (337)
T ss_dssp             CCEEEEEECCCGGGCBSSCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBTTCCSSCBCTTSCBCHHHHHHHHHH
T ss_pred             CCEEEEecCCCcccCCcccCccCCCCChHHHHHHHHHHHCCCeEEEEeeecccCCCCCcceeeCCCCcCccHHHHHHHHH
Confidence            99999999878767999999999999999999999999999999999999999999999999976899999999999999


Q ss_pred             HHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCC--CCccccCCCCCCH
Q 013861          251 QAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRF--GDKKTYQMNPANY  328 (435)
Q Consensus       251 ~Avs~A~AGADiVAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~f--gDRktYQmdp~N~  328 (435)
                      |||+||+||||||||||||||||++||++||++||+||+|||||+||||+||||||||++|+|+|  ||||||||||+|+
T Consensus       160 ~Als~A~AGADiVAPSdMMDGrV~aIR~aLd~~G~~~v~ImsYsaKyASafYGPFRdAa~Sap~f~~GDrktYQmdpaN~  239 (337)
T 1w5q_A          160 QALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTNVRVMAYSAKYASAYYGPFRDAVGSASNLGKGNRATYQMDPANS  239 (337)
T ss_dssp             HHHHHHHTTCSEEEECSCCTTHHHHHHHHHHHTTCTTCEEEEEEEEBCCGGGHHHHHC----------CGGGTSBCTTCS
T ss_pred             HHHHHHHcCCCeEecccccccHHHHHHHHHHHCCCCCceeehhHHHHHHHHHHHHHHHhcCCcccCCCCccccCCCCCCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999  9999999999999


Q ss_pred             HHHHHHHHhcccccccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHH
Q 013861          329 REALVEAQADESEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLM  408 (435)
Q Consensus       329 ~EAlre~~~D~~EGADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~  408 (435)
                      +|||||+++|++|||||||       |||||+|||||+++|++|++||+||||||||||||||+++||+| +++++|+|+
T Consensus       240 ~EAlrE~~~Di~EGAD~vM-------VKPal~YLDIir~vk~~~~~PvaaYqVSGEYAMikaAa~~GwiD-~~~v~Esl~  311 (337)
T 1w5q_A          240 DEALHEVAADLAEGADMVM-------VKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAMHMGAIQNGWLA-ESVILESLT  311 (337)
T ss_dssp             HHHHHHHHHHHHTTCSEEE-------EESCGGGHHHHHHHHHHHCSCEEEEECHHHHHHHHHHHHTTSSC-TTHHHHHHH
T ss_pred             HHHHHHHHhhHHhCCCEEE-------EcCCCchHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHHcCCcc-HHHHHHHHH
Confidence            9999999999999999999       99999999999999999999999999999999999999999999 999999999


Q ss_pred             HHHHhcccEeehhcHHHHHHHHhc
Q 013861          409 CLRRAGADIILTYFALQAARCLCG  432 (435)
Q Consensus       409 ~ikRAGAd~IiTYfA~~~a~~L~~  432 (435)
                      +|||||||+||||||+|+|+||++
T Consensus       312 ~~kRAGAd~IiTYfA~~~a~~L~~  335 (337)
T 1w5q_A          312 AFKRAGADGILTYFAKQAAEQLRR  335 (337)
T ss_dssp             HHHHHTCSEEEETTHHHHHHHHHC
T ss_pred             HHHhcCCCEEeeecHHHHHHHHhc
Confidence            999999999999999999999985
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A* Back     alignment and structure
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49} Back     alignment and structure
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A Back     alignment and structure
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A Back     alignment and structure
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} Back     alignment and structure
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A Back     alignment and structure
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... Back     alignment and structure
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 Back     alignment and structure
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 Back     alignment and structure
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Back     alignment and structure
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* Back     alignment and structure
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 Back     alignment and structure
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} Back     alignment and structure
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} Back     alignment and structure
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 Back     alignment and structure
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A Back     alignment and structure
>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A* Back     alignment and structure
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A Back     alignment and structure
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} Back     alignment and structure
>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A Back     alignment and structure
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A Back     alignment and structure
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} Back     alignment and structure
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 Back     alignment and structure
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Back     alignment and structure
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A Back     alignment and structure
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A Back     alignment and structure
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A Back     alignment and structure
>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A Back     alignment and structure
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} Back     alignment and structure
>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* Back     alignment and structure
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} Back     alignment and structure
>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei} Back     alignment and structure
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 Back     alignment and structure
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} Back     alignment and structure
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A Back     alignment and structure
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A Back     alignment and structure
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Back     alignment and structure
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A Back     alignment and structure
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* Back     alignment and structure
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A Back     alignment and structure
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* Back     alignment and structure
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} Back     alignment and structure
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} Back     alignment and structure
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 Back     alignment and structure
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} Back     alignment and structure
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A Back     alignment and structure
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A* Back     alignment and structure
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Back     alignment and structure
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} Back     alignment and structure
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 Back     alignment and structure
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* Back     alignment and structure
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* Back     alignment and structure
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A Back     alignment and structure
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A Back     alignment and structure
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 Back     alignment and structure
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* Back     alignment and structure
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 Back     alignment and structure
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 Back     alignment and structure
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* Back     alignment and structure
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A Back     alignment and structure
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii} Back     alignment and structure
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A Back     alignment and structure
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis} Back     alignment and structure
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 Back     alignment and structure
>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} Back     alignment and structure
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Back     alignment and structure
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A Back     alignment and structure
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A Back     alignment and structure
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} Back     alignment and structure
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* Back     alignment and structure
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Back     alignment and structure
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* Back     alignment and structure
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* Back     alignment and structure
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* Back     alignment and structure
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A Back     alignment and structure
>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3 Back     alignment and structure
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 Back     alignment and structure
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 435
d1gzga_329 c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD 1e-122
d2c1ha1319 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase 1e-122
d1l6sa_323 c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD 1e-120
d1pv8a_320 c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD 1e-114
d1h7na_340 c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD 1e-108
>d1gzga_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Pseudomonas aeruginosa [TaxId: 287]} Length = 329 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  357 bits (917), Expect = e-122
 Identities = 150/331 (45%), Positives = 213/331 (64%), Gaps = 12/331 (3%)

Query: 103 SRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGE-EDTPIGAMPGCYRLGWRHGLVQ 161
             R RRNR+    R   +E  L+  + + P+F+ +G  +   I +MPG  RL     L+ 
Sbjct: 6   YTRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQ-LLI 64

Query: 162 EVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVAL 221
           E  +   +G+ ++ LFP  P   KS    EAYN  G+  R    L++R+P+L I TDVAL
Sbjct: 65  EAEEWVALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVAL 124

Query: 222 DPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALD 281
           DP+++ G +GI+ +DG ++ND ++  L +QA+S A AGA VV+PSDMMDGR+GAIR AL+
Sbjct: 125 DPFTTHGQNGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALE 184

Query: 282 AEGFQHVSIMSYTAKYASSFYGPFREALDS--NPRFGDKKTYQMNPANYREALVEAQADE 339
           + G  +V +M+Y+AKYAS++YGPFR+A+ S  N   G+K TYQM+PAN  EAL E  AD 
Sbjct: 185 SAGHTNVRVMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQMDPANSDEALHEVAADL 244

Query: 340 SEGADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDE 399
           +EGAD+++       VKPG+PYLD++R ++D++  P   YQVSGEY+M         + E
Sbjct: 245 AEGADMVM-------VKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAMHMGAIQNGWLAE 297

Query: 400 QRVMMESLMCLRRAGADIILTYFALQAARCL 430
             V++ESL   +RAGAD ILTYFA QAA  L
Sbjct: 298 -SVILESLTAFKRAGADGILTYFAKQAAEQL 327
>d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Prosthecochloris vibrioformis [TaxId: 1098]} Length = 319 Back     information, alignment and structure
>d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Escherichia coli [TaxId: 562]} Length = 323 Back     information, alignment and structure
>d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Human (Homo sapiens) [TaxId: 9606]} Length = 320 Back     information, alignment and structure
>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query435
d2c1ha1319 5-aminolaevulinate dehydratase, ALAD (porphobilino 100.0
d1gzga_329 5-aminolaevulinate dehydratase, ALAD (porphobilino 100.0
d1l6sa_323 5-aminolaevulinate dehydratase, ALAD (porphobilino 100.0
d1h7na_340 5-aminolaevulinate dehydratase, ALAD (porphobilino 100.0
d1pv8a_320 5-aminolaevulinate dehydratase, ALAD (porphobilino 100.0
d3bofa2300 Cobalamin-dependent methionine synthase MetH, N-te 90.91
d2pjua1186 Propionate catabolism operon regulatory protein Pr 90.86
d1xkya1 292 Dihydrodipicolinate synthase {Bacillus anthracis [ 90.55
d1xxxa1 296 Dihydrodipicolinate synthase {Mycobacterium tuberc 90.01
d1oy0a_262 Ketopantoate hydroxymethyltransferase PanB {Mycoba 89.59
d1y0ea_222 Putative N-acetylmannosamine-6-phosphate 2-epimera 89.03
d1s2wa_275 Phosphoenolpyruvate mutase {Blue mussel (Mytilus e 88.88
d1ykwa1283 Ribulose 1,5-bisphosphate carboxylase-oxygenase {C 86.77
d1muma_289 2-methylisocitrate lyase {Escherichia coli [TaxId: 85.27
d2a6na1 292 Dihydrodipicolinate synthase {Escherichia coli [Ta 85.14
d1ps9a1330 2,4-dienoyl-CoA reductase, N-terminal domain {Esch 83.52
d1xi3a_206 Thiamin phosphate synthase {Archaeon (Pyrococcus f 82.53
d1wdda1 325 Ribulose 1,5-bisphosphate carboxylase-oxygenase {R 82.49
d2d69a1291 Ribulose 1,5-bisphosphate carboxylase-oxygenase {A 81.71
d1km4a_ 212 Orotidine 5'-monophosphate decarboxylase (OMP deca 81.6
d1m3ua_262 Ketopantoate hydroxymethyltransferase PanB {Escher 80.62
>d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Prosthecochloris vibrioformis [TaxId: 1098]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
species: Prosthecochloris vibrioformis [TaxId: 1098]

Probab=100.00  E-value=1.7e-150  Score=1105.78  Aligned_cols=317  Identities=54%  Similarity=0.907  Sum_probs=310.6

Q ss_pred             CCCCCCCCChHHHhhhhcCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCC
Q 013861          104 RRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPD  182 (435)
Q Consensus       104 ~R~RRlR~~~~~R~l~~Et~L~~~~LI~PlFV~eg~~-~~~I~sMPGv~r~s~~~~l~~~v~~~~~~GI~sv~LFgvi~~  182 (435)
                      .||||||+|+++|+|++||+|+++||||||||+||++ ++||+|||||||||++ .|++++++++++||++|+|||+ |+
T Consensus         2 ~R~RRlR~~~~iR~Lv~Et~Ls~~dLI~PiFV~eg~~~~~~I~SMPGi~R~Sid-~L~~~ie~~~~lGI~av~LFpv-~~   79 (319)
T d2c1ha1           2 HRPRRLRRTAALRNLVQENTLTVNDLVFPLFVMPGTNAVEEVSSMPGSFRFTID-RAVEECKELYDLGIQGIDLFGI-PE   79 (319)
T ss_dssp             CCGGGGSSCHHHHHHHCCCCCCGGGEEEEEEECSSSSCEEECTTSTTCEEECHH-HHHHHHHHHHHTTCCEEEEEEC-CS
T ss_pred             CCcccCCCCHHHHHHHhhCCCCHHHceeeeEEeeCCCCceecCCCCCcceeCHH-HHHHHHHHHHhccCcEEEEEec-cc
Confidence            6999999999999999999999999999999999986 6899999999999997 6999999999999999999996 54


Q ss_pred             CCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCe
Q 013861          183 ALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADV  262 (435)
Q Consensus       183 ~~Kd~~Gs~A~~~~g~v~raIr~iK~~~Pdl~IitDVcLc~YTshGHcGIv~e~g~IdND~Tv~~Lak~Avs~A~AGADi  262 (435)
                       .||+.|++|||+||++|||||.||++||||+|||||||||||+||||||+ ++|+||||+||+.|++||++||+|||||
T Consensus        80 -~K~k~gseA~n~dglv~rAir~iK~~fpdl~Ii~DVcLcpYT~hGHcGi~-~~g~IdND~Tl~~L~k~Al~~A~AGaDi  157 (319)
T d2c1ha1          80 -QKTEDGSEAYNDNGILQQAIRAIKKAVPELCIMTDVALDPFTPFGHDGLV-KDGIILNDETVEVLQKMAVSHAEAGADF  157 (319)
T ss_dssp             -CCCTTCGGGGCTTCHHHHHHHHHHHHCTTSEEEEECCSGGGSTTCCSSCB-SSSCBCSHHHHHHHHHHHHHHHHHTCSE
T ss_pred             -ccccCchhhcccccHHHHHHHHHHhhhcCeEEEeecccchhhhhccccee-cCCCcchHHHHHHHHHHHHHHHhcCCCc
Confidence             69999999999999999999999999999999999999999999999999 5899999999999999999999999999


Q ss_pred             ecCCCCCCchHHHHHHHHHHCCCCCceeechhhhhcccccccchhhhcCCCCCCCccccCCCCCCHHHHHHHHHhccccc
Q 013861          263 VSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVEAQADESEG  342 (435)
Q Consensus       263 VAPSDMMDGrVgAIR~aLD~~Gf~~v~IMSYSaKyASafYGPFRdA~~Sap~fgDRktYQmdp~N~~EAlre~~~D~~EG  342 (435)
                      |||||||||||++||++||++||++|+|||||+||||+||||||||++|+|+||||+||||||+|++||++|+.+|++||
T Consensus       158 VAPSdMMDGrV~aIR~~Ld~~g~~~v~ImSYsaKfaS~fYGPFRda~~S~p~~gdr~~YQmd~~n~~eA~~e~~~D~~EG  237 (319)
T d2c1ha1         158 VSPSDMMDGRIGAIREALDETDHSDVGILSYAAKYASSFYGPFRDALHSAPQFGDKSTYQMNPANTEEAMKEVELDIVEG  237 (319)
T ss_dssp             EECCSCCTTHHHHHHHHHHHTTCTTSEEEEEEEEBCCSCCHHHHHHSCCCCCCSCSTTTSBCTTCSHHHHHHHHHHHHHT
T ss_pred             ccccccchhHHHHHHHHHHhcCcccceeeeHHHHHhHHhhHHHHHHHhchhhcCCcceeecCCCChHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEecccCCCcccCCCchHHHHHHHHhhCCCCeEEEEechHHHHHHHHHHCCCCchhhHHHHHHHHHHHhcccEeehhc
Q 013861          343 ADILLFSVLGSQVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYF  422 (435)
Q Consensus       343 ADilM~~~~~~~VKPal~YLDIIr~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ide~~~v~Esl~~ikRAGAd~IiTYf  422 (435)
                      |||||       ||||++|||||+++|++|++||+||||||||+|||+|+++||+|++++++|+|++|||||||+|||||
T Consensus       238 AD~lM-------VKPa~~yLDii~~~k~~~~~Pv~aYqVSGEYamik~a~~~g~~d~~~~~~Esl~~~kRAGAd~IitY~  310 (319)
T d2c1ha1         238 ADIVM-------VKPGLAYLDIVWRTKERFDVPVAIYHVSGEYAMVKAAAAKGWIDEDRVMMESLLCMKRAGADIIFTYY  310 (319)
T ss_dssp             CSEEE-------EESCGGGHHHHHHHHHHHCSCEEEEECHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSEEEETT
T ss_pred             CCeEE-------ecchhHHHHHHHHHHhccCCCEEEEEcchHHHHHHHHHHCCCCcHHHHHHHHHHHHHHcCCCEEEEcc
Confidence            99999       99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 013861          423 ALQAARCLC  431 (435)
Q Consensus       423 A~~~a~~L~  431 (435)
                      |+|+|+||+
T Consensus       311 A~~~a~~Lk  319 (319)
T d2c1ha1         311 AKEAAKKLR  319 (319)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHhhC
Confidence            999999995
>d1gzga_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure
>d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} Back     information, alignment and structure
>d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure